Citrus Sinensis ID: 026087

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMSL
Secondary Structure (PSIPRED)
ccccccEEEEEHHHHcccccccEEEEEEEccccccEEEEEEEEEEcccccHHHHccccccccccEEccccccEEEEEEcccccccccccEEEEcccccccccccccccccccccccccccccccccccccccEEEccEEEEEEEccccccccEEEEccEEEEccccccccEEEEEccccccccHHEEEEcccccccEEEEEcccHHHHHHHHHHHHcccccEEEEccccccHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEEcccccccEEEEEEEccccccEEEEEEEEEEEcHHHHHHHHcccccccccEccccEEEEEEEEEcccccccccccEEEEcccccccccHHHHccccccccccHHHHHcccccccccccEEEccEEEEccccccccEcEEEEEHHHEEEcccccccccHHHHHcHHHHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MSTEGQVITCKAavawepnkplviedvqvappqagEVRIKILFTALChtdaytwsgkdpeglfpcilgheAAGIVesvgegvtevqpgdhvipcyqaecreckfcksgktnlcgkvrgatgagvmmndrksrfsingkpiyhfmgtstfsQYTVVHdvsvakidpqapldkvcllgcgvptglgavwntakvepgsivAVFGLGTVGLAVAEGAKaagasrvigididpkKFDRVLNALAMSL
Flexible Loop (DISEMBL)
mstegqvitckaavawepnkpLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFcksgktnlcgkvrgatgagvmmndRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAkaagasrvigididpKKFDRVLNALAMSL
Low Complexity Region (SEG)
MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVglavaegakaagaSRVIGIDIDPKKFDRVLNALAMSL
Disordered region (IsUnstruct)
******VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA*****
Disordered Region (DISOPRED)
**TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMSL
Disordered Region (DISEMBL)
MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMSL
Disordered Region (DISPRO)
****GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM*L
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	243	2.2.26 [Sep-21-2011]
A2XAZ3	381	Alcohol dehydrogenase cla	N/A	no	0.971	0.619	0.923	1e-127
Q0DWH1	381	Alcohol dehydrogenase cla	yes	no	0.971	0.619	0.919	1e-127
Q96533	379	Alcohol dehydrogenase cla	yes	no	0.958	0.614	0.927	1e-126
P93629	381	Alcohol dehydrogenase cla	N/A	no	0.967	0.616	0.927	1e-126
P80572	378	Alcohol dehydrogenase cla	N/A	no	0.971	0.624	0.877	1e-119
P79896	376	Alcohol dehydrogenase cla	N/A	no	0.954	0.617	0.673	2e-88
P12711	374	Alcohol dehydrogenase cla	yes	no	0.938	0.609	0.711	2e-87
P81600	375	Alcohol dehydrogenase cla	N/A	no	0.954	0.618	0.669	2e-87
P00333	379	Alcohol dehydrogenase 1 O	N/A	no	0.962	0.617	0.662	2e-87
P06525	379	Alcohol dehydrogenase cla	no	no	0.962	0.617	0.653	2e-87

>sp|A2XAZ3|ADHX_ORYSI Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. indica GN=ADHIII PE=3 SV=1

 Score =  454 bits (1168), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/236 (92%), Positives = 225/236 (95%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST+GQVITCKAAVAWE NKP+ IEDVQVAPPQAGEVR+KILFTALCHTD YTWSGKDPEG
Sbjct: 4   STQGQVITCKAAVAWEANKPMTIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDPEG 63

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR ATG
Sbjct: 64  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATG 123

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI+PQAPLDKVCLLGCGV T
Sbjct: 124 VGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVST 183

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237
           GLGAVWNTAKVE GSIVA+FGLGTVGLAVAEGAK+AGASR+IGIDID KKFD   N
Sbjct: 184 GLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFDVAKN 239

Oryza sativa subsp. indica (taxid: 39946)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 8EC: 4

>sp|Q0DWH1|ADHX_ORYSJ Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. japonica GN=Os02g0815500 PE=2 SV=1

 Score =  453 bits (1166), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/236 (91%), Positives = 225/236 (95%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST+GQVITCKAAVAWE N+P+ IEDVQVAPPQAGEVR+KILFTALCHTD YTWSGKDPEG
Sbjct: 4   STQGQVITCKAAVAWEANRPMTIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDPEG 63

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR ATG
Sbjct: 64  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATG 123

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI+PQAPLDKVCLLGCGV T
Sbjct: 124 VGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVST 183

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237
           GLGAVWNTAKVE GSIVA+FGLGTVGLAVAEGAK+AGASR+IGIDID KKFD   N
Sbjct: 184 GLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFDVAKN 239

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|Q96533|ADHX_ARATH Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2

 Score =  452 bits (1163), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/233 (92%), Positives = 226/233 (96%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M+T+GQVITCKAAVA+EPNKPLVIEDVQVAPPQAGEVRIKIL+TALCHTDAYTWSGKDPE
Sbjct: 1   MATQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPE 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
           GLFPCILGHEAAGIVESVGEGVTEVQ GDHVIPCYQAECRECKFCKSGKTNLCGKVR AT
Sbjct: 61  GLFPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSAT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
           G G+MMNDRKSRFS+NGKPIYHFMGTSTFSQYTVVHDVSVAKIDP APLDKVCLLGCGVP
Sbjct: 121 GVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVP 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           TGLGAVWNTAKVEPGS VA+FGLGTVGLAVAEGAK AGASR+IGIDID KK++
Sbjct: 181 TGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYE 233

Plays a central role in formaldehyde detoxification.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P93629|ADHX_MAIZE Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH PE=2 SV=1

 Score =  451 bits (1160), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/235 (92%), Positives = 226/235 (96%)

Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
           T+GQVITCKAAVA+EPNKPLVIEDVQVAPPQAGEVR+KILFTALCHTD YTWSGKDPEGL
Sbjct: 5   TQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDPEGL 64

Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
           FPCILGHEAAGIVESVGEGVT+VQPGDHVIPCYQAEC+ECKFCKSGKTNLCGKVR ATG 
Sbjct: 65  FPCILGHEAAGIVESVGEGVTDVQPGDHVIPCYQAECKECKFCKSGKTNLCGKVRSATGV 124

Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG 182
           GVMMND KSRFS+NGKPIYHFMGTSTFSQYTVVHDVSVAKI+PQAPLDKVCLLGCGVPTG
Sbjct: 125 GVMMNDMKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVPTG 184

Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237
           LGAVWNTAKVE GS+VAVFGLGTVGLAVAEGAKAAGASRVIGIDID KKFD   N
Sbjct: 185 LGAVWNTAKVESGSVVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDNKKFDVAKN 239

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P80572|ADHX_PEA Alcohol dehydrogenase class-3 OS=Pisum sativum PE=1 SV=1

 Score =  427 bits (1099), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/236 (87%), Positives = 218/236 (92%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           +T+GQVITCKAAVAWEPNKPL IEDV+VAPPQA EVRI+ILFTALCHTDAYT  GKDPEG
Sbjct: 1   ATQGQVITCKAAVAWEPNKPLTIEDVEVAPPQANEVRIQILFTALCHTDAYTLGGKDPEG 60

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           LFPCILGHEAAGIVESVGEGVT+V+PGDHVIP YQAEC ECKFCKS KTNLCGKVR ATG
Sbjct: 61  LFPCILGHEAAGIVESVGEGVTDVKPGDHVIPSYQAECGECKFCKSPKTNLCGKVRAATG 120

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            GVMM DRKSRFS+ GKPIYHFMGTSTFSQYTVVHDVSVAKI P APLDKVCLLGCGVPT
Sbjct: 121 VGVMMADRKSRFSVKGKPIYHFMGTSTFSQYTVVHDVSVAKIHPDAPLDKVCLLGCGVPT 180

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237
           GLGAVWNTAKVEPGSIVA+FGLGTVGLAVAEGAK+AGASR+IGIDID  K+D   N
Sbjct: 181 GLGAVWNTAKVEPGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSNKYDTAKN 236

Class-III ADH is remarkably ineffective in oxidizing ethanol, but it readily catalyzes the oxidation of long-chain primary alcohols and the oxidation of S-(hydroxymethyl) glutathione.

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P79896|ADHX_SPAAU Alcohol dehydrogenase class-3 OS=Sparus aurata PE=2 SV=1

 Score =  325 bits (832), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 157/233 (67%), Positives = 186/233 (79%), Gaps = 1/233 (0%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M T G+VI CKAAVAWEP KPL IE+V+VAPP A EVRIK+  T +CHTDAYT SG DPE
Sbjct: 1   METAGKVIKCKAAVAWEPGKPLSIEEVEVAPPNAHEVRIKLFATGVCHTDAYTLSGSDPE 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
           GLFP ILGHE AG VESVGEGVT+ +PGD VIP Y  +C ECKFCK+ KTNLC K+R   
Sbjct: 61  GLFPVILGHEGAGTVESVGEGVTKFKPGDTVIPLYVPQCGECKFCKNPKTNLCQKIRITQ 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
           G G ++ D+ SRF+  GK ++HFMGTSTFS+YTVV D+S+AK++ +AP+DKVCLLGCG+ 
Sbjct: 121 GQG-LLPDKTSRFTCKGKQVFHFMGTSTFSEYTVVADISLAKVNEKAPMDKVCLLGCGIS 179

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           TG GA  NTAKVEPGS  AVFGLG VGLAV  G K AGA+R+IGID++P KF+
Sbjct: 180 TGYGAALNTAKVEPGSTCAVFGLGAVGLAVIMGCKVAGATRIIGIDLNPAKFE 232

Class-III ADH is remarkably ineffective in oxidizing ethanol, but it readily catalyzes the oxidation of long-chain primary alcohols and the oxidation of S-(hydroxymethyl) glutathione.

Sparus aurata (taxid: 8175)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P12711|ADHX_RAT Alcohol dehydrogenase class-3 OS=Rattus norvegicus GN=Adh5 PE=1 SV=2

 Score =  322 bits (825), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 163/229 (71%), Positives = 182/229 (79%), Gaps = 1/229 (0%)

Query: 6   QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
           QVI CKAAVAWE  KPL IE+++VAPPQA EVRIKI+ TA+CHTDAYT SG DPEG FP 
Sbjct: 4   QVIRCKAAVAWEAGKPLSIEEIEVAPPQAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 63

Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
           ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +
Sbjct: 64  ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 122

Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
           M D  SRF+  GKPI HFMGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct: 123 MPDGTSRFTCKGKPILHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGA 182

Query: 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
             NTAKVEPGS  AVFGLG VGLAV  G K AGASR+IGIDI+  KF +
Sbjct: 183 AVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDINKDKFAK 231

Class-III ADH is remarkably ineffective in oxidizing ethanol, but it readily catalyzes the oxidation of long-chain primary alcohols and the oxidation of S-(hydroxymethyl) glutathione.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P81600|ADHH_GADMO Alcohol dehydrogenase class-3 chain H OS=Gadus morhua PE=1 SV=1

 Score =  322 bits (824), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 156/233 (66%), Positives = 186/233 (79%), Gaps = 1/233 (0%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           +T GQVI CKAAVAWE  KPL +E+V+VAPP+AGEVRIK++ T +CHTDAYT SG DPEG
Sbjct: 1   ATAGQVIKCKAAVAWEAGKPLSLEEVEVAPPRAGEVRIKVVATGVCHTDAYTLSGSDPEG 60

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
            FP ILGHE AG+VESVGEGVT+ + GD VIP Y  +C ECKFCK+ KTNLC K+R   G
Sbjct: 61  AFPVILGHEGAGLVESVGEGVTKFKAGDTVIPLYVPQCGECKFCKNPKTNLCQKIRVTQG 120

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G +M D  SRF+  GK ++HFMGTSTFS+YTVV D+S+A +DP+APLDKVCLLGCG+ T
Sbjct: 121 RG-LMPDNTSRFTCKGKQLFHFMGTSTFSEYTVVADISLANVDPKAPLDKVCLLGCGIST 179

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           G GA  NTAKVEPGS  AVFGLG VGLA   G K AGA+R+IG+DI+P+KF +
Sbjct: 180 GYGAALNTAKVEPGSTCAVFGLGAVGLAAIMGCKVAGATRIIGVDINPEKFGK 232

Class-III ADH is remarkably ineffective in oxidizing ethanol, but it readily catalyzes the oxidation of long-chain primary alcohols and the oxidation of S-(hydroxymethyl) glutathione.

Gadus morhua (taxid: 8049)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P00333|ADH1_MAIZE Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 SV=1

 Score =  322 bits (824), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 155/234 (66%), Positives = 184/234 (78%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M+T G+VI CKAAVAWE  KPL IE+V+VAPPQA EVR+KILFT+LCHTD Y W  K   
Sbjct: 1   MATAGKVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILFTSLCHTDVYFWEAKGQT 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
            +FP I GHEA GI+ESVGEGVT+V PGDHV+P +  EC+EC  CKS ++N+C  +R  T
Sbjct: 61  PVFPRIFGHEAGGIIESVGEGVTDVAPGDHVLPVFTGECKECAHCKSAESNMCDLLRINT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
             GVM+ D KSRFSINGKPIYHF+GTSTFS+YTV+H   VAKI+PQAPLDKVC+L CG  
Sbjct: 121 DRGVMIADGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPQAPLDKVCVLSCGYS 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           TGLGA  N AK   GS VAVFGLG VGLA AEGA+ AGASR+IG+D++P +F+ 
Sbjct: 181 TGLGASINVAKPPKGSTVAVFGLGAVGLAAAEGARIAGASRIIGVDLNPSRFEE 234

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P06525|ADH1_ARATH Alcohol dehydrogenase class-P OS=Arabidopsis thaliana GN=ADH1 PE=1 SV=2

 Score =  322 bits (824), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 153/234 (65%), Positives = 183/234 (78%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           MST GQ+I CKAAVAWE  KPLVIE+V+VAPPQ  EVRIKILFT+LCHTD Y W  K   
Sbjct: 1   MSTTGQIIRCKAAVAWEAGKPLVIEEVEVAPPQKHEVRIKILFTSLCHTDVYFWEAKGQT 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
            LFP I GHEA GIVESVGEGVT++QPGDHV+P +  EC EC+ C S ++N+C  +R  T
Sbjct: 61  PLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPIFTGECGECRHCHSEESNMCDLLRINT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
             G M++D +SRFSINGKPIYHF+GTSTFS+YTVVH   VAKI+P APLDKVC++ CG+ 
Sbjct: 121 ERGGMIHDGESRFSINGKPIYHFLGTSTFSEYTVVHSGQVAKINPDAPLDKVCIVSCGLS 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           TGLGA  N AK + G  VA+FGLG VGL  AEGA+ AGASR+IG+D + K+FD+
Sbjct: 181 TGLGATLNVAKPKKGQSVAIFGLGAVGLGAAEGARIAGASRIIGVDFNSKRFDQ 234

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
353703786	379	alcohol dehydrogenase class III [Solanum	0.975	0.625	0.940	1e-129
433286663	396	Chain A, Crystal Structure Of S-nitrosog	0.971	0.595	0.940	1e-129
449487339	349	PREDICTED: alcohol dehydrogenase class-3	0.958	0.667	0.944	1e-127
449445644	379	PREDICTED: alcohol dehydrogenase class-3	0.958	0.614	0.944	1e-127
429840534	378	alcohol dehydrogenase 2 [Diospyros kaki]	0.975	0.626	0.928	1e-126
255585914	379	alcohol dehydrogenase, putative [Ricinus	0.962	0.617	0.935	1e-126
82400134	379	alcohol dehydrogenase class III-like pro	0.975	0.625	0.919	1e-126
224065517	379	glutathione-dependent formaldehyde dehyd	0.962	0.617	0.931	1e-126
148886774	381	RecName: Full=Alcohol dehydrogenase clas	0.971	0.619	0.923	1e-125
242063486	381	hypothetical protein SORBIDRAFT_04g03705	0.971	0.619	0.927	1e-125

>gi|353703786|ref|NP_001238796.1| alcohol dehydrogenase class III [Solanum lycopersicum] gi|283825505|gb|ADB43258.1| alcohol dehydrogenase class III [Solanum lycopersicum] gi|322719690|gb|ADX07743.1| alcohol dehydrogenase class III [Solanum habrochaites] gi|322719692|gb|ADX07744.1| alcohol dehydrogenase class III [Solanum chmielewskii]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/237 (94%), Positives = 231/237 (97%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M+T+GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVR+K+L+TALCHTDAYTWSGKDPE
Sbjct: 1   MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKVLYTALCHTDAYTWSGKDPE 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
           GLFPC+LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR AT
Sbjct: 61  GLFPCVLGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAAT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
           G GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP APL+KVCLLGCGVP
Sbjct: 121 GVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLEKVCLLGCGVP 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237
           TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASR+IGIDID KKFDR  N
Sbjct: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDRAKN 237

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|433286663|pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ gi|433286664|pdb|4DL9|B Chain B, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ gi|433286665|pdb|4DLA|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase Apoenzyme From Tomato (solanum Lycopersicum) gi|433286666|pdb|4DLA|B Chain B, Crystal Structure Of S-nitrosoglutathione Reductase Apoenzyme From Tomato (solanum Lycopersicum) gi|433286667|pdb|4DLB|A Chain A, Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) Crystallized In Presence Of Nadh And Glutathione gi|433286668|pdb|4DLB|B Chain B, Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) Crystallized In Presence Of Nadh And Glutathione

 Score =  465 bits (1196), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/236 (94%), Positives = 230/236 (97%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           +T+GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVR+K+L+TALCHTDAYTWSGKDPEG
Sbjct: 19  ATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKVLYTALCHTDAYTWSGKDPEG 78

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           LFPC+LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR ATG
Sbjct: 79  LFPCVLGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATG 138

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP APL+KVCLLGCGVPT
Sbjct: 139 VGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLEKVCLLGCGVPT 198

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237
           GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASR+IGIDID KKFDR  N
Sbjct: 199 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDRAKN 254

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487339|ref|XP_004157577.1| PREDICTED: alcohol dehydrogenase class-3-like [Cucumis sativus]

 Score =  458 bits (1179), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 220/233 (94%), Positives = 229/233 (98%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M+T+GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVR+KIL+TALCHTDAYTWSGKDPE
Sbjct: 1   MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGKDPE 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
           GLFPCILGHEAAGIVESVGEGVT+VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT
Sbjct: 61  GLFPCILGHEAAGIVESVGEGVTDVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
           G GVMM+DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP APLDKVCLLGCGVP
Sbjct: 121 GVGVMMSDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVP 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           TGLGAVWNTAKVEPGS VA+FGLGTVGLAVAEGAKAAGASR+IGIDID KKF+
Sbjct: 181 TGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKAAGASRIIGIDIDNKKFE 233

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445644|ref|XP_004140582.1| PREDICTED: alcohol dehydrogenase class-3-like [Cucumis sativus]

 Score =  458 bits (1179), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 220/233 (94%), Positives = 229/233 (98%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M+T+GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVR+KIL+TALCHTDAYTWSGKDPE
Sbjct: 1   MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGKDPE 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
           GLFPCILGHEAAGIVESVGEGVT+VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT
Sbjct: 61  GLFPCILGHEAAGIVESVGEGVTDVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
           G GVMM+DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP APLDKVCLLGCGVP
Sbjct: 121 GVGVMMSDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVP 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           TGLGAVWNTAKVEPGS VA+FGLGTVGLAVAEGAKAAGASR+IGIDID KKF+
Sbjct: 181 TGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKAAGASRIIGIDIDNKKFE 233

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|429840534|gb|AGA15794.1| alcohol dehydrogenase 2 [Diospyros kaki]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/237 (92%), Positives = 227/237 (95%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M+T+GQVITCKAAVAWEPNKPL IEDVQVAPPQAGEVRI+ILFTALCHTDAYTWSGKDPE
Sbjct: 1   MATQGQVITCKAAVAWEPNKPLAIEDVQVAPPQAGEVRIQILFTALCHTDAYTWSGKDPE 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
           GLFPCILGHEAAGIVESVGEGVTEV PGDHVIPCYQAECRECKFCKSGKTNLCGKVR AT
Sbjct: 61  GLFPCILGHEAAGIVESVGEGVTEVHPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAAT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
           G GVMMNDRKSRFSING PIYHFMGTSTFSQYTVVHDVSVAKIDP APL+KVCLLGCGVP
Sbjct: 121 GVGVMMNDRKSRFSINGTPIYHFMGTSTFSQYTVVHDVSVAKIDPIAPLEKVCLLGCGVP 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237
           TGLGAVWNTAKVEPGSIVA+FGLGTVGLAVAEGAK+AGASR+IGIDID KKFD   N
Sbjct: 181 TGLGAVWNTAKVEPGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFDTAKN 237

Source: Diospyros kaki

Species: Diospyros kaki

Genus: Diospyros

Family: Ebenaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585914|ref|XP_002533630.1| alcohol dehydrogenase, putative [Ricinus communis] gi|223526488|gb|EEF28759.1| alcohol dehydrogenase, putative [Ricinus communis]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/234 (93%), Positives = 229/234 (97%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M+T+GQVI CKAAVA+EPNKPLVIEDVQVAPPQAGEVR++ILFTALCHTDAYTWSGKDPE
Sbjct: 1   MATQGQVIICKAAVAYEPNKPLVIEDVQVAPPQAGEVRVQILFTALCHTDAYTWSGKDPE 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
           GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECR+CKFCKSGKTNLCGKVR AT
Sbjct: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRDCKFCKSGKTNLCGKVRAAT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
           G GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP+APL+KVCLLGCGVP
Sbjct: 121 GVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPKAPLEKVCLLGCGVP 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           TGLGAVWNTAKVE GSIVAVFGLGTVGLAVAEGAKAAGASR+IGIDID KK+DR
Sbjct: 181 TGLGAVWNTAKVEAGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKYDR 234

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|82400134|gb|ABB72806.1| alcohol dehydrogenase class III-like protein [Solanum tuberosum]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/237 (91%), Positives = 228/237 (96%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M+T+GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVR+K+L+TALCHTDAYTWSGKDPE
Sbjct: 1   MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKVLYTALCHTDAYTWSGKDPE 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
           GLFP +LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR AT
Sbjct: 61  GLFPSVLGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAAT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
           G GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD SVA+IDP APL+KVCLLGC VP
Sbjct: 121 GVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDGSVARIDPAAPLEKVCLLGCWVP 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237
           TGLGAVWNTAKVEPGSIVA+FGLGTVGLAVAEGAKAAGASR+IGIDID KKFDR  N
Sbjct: 181 TGLGAVWNTAKVEPGSIVAIFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDRAKN 237

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065517|ref|XP_002301836.1| glutathione-dependent formaldehyde dehydrogenase [Populus trichocarpa] gi|222843562|gb|EEE81109.1| glutathione-dependent formaldehyde dehydrogenase [Populus trichocarpa]

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/234 (93%), Positives = 227/234 (97%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M+T+GQVITC+AAVAWE NKPLVIE+VQVAPPQAGEVR+KILF ALCHTDAYTWSGKDPE
Sbjct: 1   MATQGQVITCRAAVAWEANKPLVIEEVQVAPPQAGEVRVKILFAALCHTDAYTWSGKDPE 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
           GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR AT
Sbjct: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRTAT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
           G GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP+APL+KVCLLGCGVP
Sbjct: 121 GVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPKAPLEKVCLLGCGVP 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           TGLGAVWNTAKVE GSIVA+FGLGTVGLAVAEGAK AGASR+IGIDID KKFDR
Sbjct: 181 TGLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKFDR 234

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148886774|sp|A2XAZ3.1|ADHX_ORYSI RecName: Full=Alcohol dehydrogenase class-3; AltName: Full=Alcohol dehydrogenase class-III; AltName: Full=Glutathione-dependent formaldehyde dehydrogenase; Short=FALDH; Short=FDH; Short=GSH-FDH; AltName: Full=S-(hydroxymethyl)glutathione dehydrogenase gi|125541608|gb|EAY88003.1| hypothetical protein OsI_09425 [Oryza sativa Indica Group]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/236 (92%), Positives = 225/236 (95%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST+GQVITCKAAVAWE NKP+ IEDVQVAPPQAGEVR+KILFTALCHTD YTWSGKDPEG
Sbjct: 4   STQGQVITCKAAVAWEANKPMTIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDPEG 63

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR ATG
Sbjct: 64  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATG 123

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI+PQAPLDKVCLLGCGV T
Sbjct: 124 VGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVST 183

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237
           GLGAVWNTAKVE GSIVA+FGLGTVGLAVAEGAK+AGASR+IGIDID KKFD   N
Sbjct: 184 GLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFDVAKN 239

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242063486|ref|XP_002453032.1| hypothetical protein SORBIDRAFT_04g037050 [Sorghum bicolor] gi|241932863|gb|EES06008.1| hypothetical protein SORBIDRAFT_04g037050 [Sorghum bicolor]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/236 (92%), Positives = 227/236 (96%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST+GQVITCKAAVA+EPNKPLVIEDVQVAPPQAGEVR+KILFTALCHTD YTWSGKDPEG
Sbjct: 4   STQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDPEG 63

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           LFPCILGHEAAG+VESVGEGVTEVQPGDHVIPCYQAEC+ECKFCKSGKTNLCGKVR ATG
Sbjct: 64  LFPCILGHEAAGVVESVGEGVTEVQPGDHVIPCYQAECKECKFCKSGKTNLCGKVRSATG 123

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            GVMMND KSRFS+NGKPIYHFMGTSTFSQYTVVHDVSVAKI+PQAPLDKVCLLGCGVPT
Sbjct: 124 VGVMMNDMKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVPT 183

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237
           GLGAVWNTAKVE GSIVAVFGLGTVGLAVAEGAKAAGASR+IGIDID KKFD   N
Sbjct: 184 GLGAVWNTAKVEAGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDNKKFDVAKN 239

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
RGD|2292706	374	Adh5 "alcohol dehydrogenase 5	0.930	0.604	0.678	6.2e-78
UNIPROTKB|P12711	374	Adh5 "Alcohol dehydrogenase cl	0.930	0.604	0.678	6.2e-78
ZFIN|ZDB-GENE-011003-1	376	adh5 "alcohol dehydrogenase 5"	0.954	0.617	0.635	1.6e-77
MGI|MGI:87929	374	Adh5 "alcohol dehydrogenase 5	0.930	0.604	0.669	3.4e-77
DICTYBASE|DDB_G0281865	379	adh5 "alcohol dehydrogenase, c	0.950	0.609	0.637	4.3e-77
UNIPROTKB|F1NI89	370	ADH5 "Uncharacterized protein"	0.925	0.608	0.672	4.3e-77
UNIPROTKB|F1NKS5	374	ADH5 "Uncharacterized protein"	0.925	0.601	0.672	4.3e-77
UNIPROTKB|F1NKS6	362	ADH5 "Uncharacterized protein"	0.925	0.621	0.672	4.3e-77
UNIPROTKB|F1PLM5	376	F1PLM5 "Uncharacterized protei	0.938	0.606	0.663	9e-77
UNIPROTKB|J9PA83	374	ADH5 "Uncharacterized protein"	0.938	0.609	0.663	9e-77

RGD|2292706 Adh5 "alcohol dehydrogenase 5 (class III), chi polypeptide" [Rattus norvegicus (taxid:10116)]

 Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
 Identities = 154/227 (67%), Positives = 172/227 (75%)

Query:     6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
             QVI CKAAVAWE  KPL IE+++VAPPQA EVRIKI+ TA+CHTDAYT SG DPEG FP 
Sbjct:     4 QVIRCKAAVAWEAGKPLSIEEIEVAPPQAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 63

Query:    66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
             ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +
Sbjct:    64 ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 122

Query:   126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
             M D  SRF+  GKPI HFMGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct:   123 MPDGTSRFTCKGKPILHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGA 182

Query:   186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKF 232
               NTAKVEPGS  AVFGLG V             SR+IGIDI+  KF
Sbjct:   183 AVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDINKDKF 229

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001523 "retinoid metabolic process" evidence=IEA;ISO

GO:0003016 "respiratory system process" evidence=IEA;ISO

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=IEA;ISO;IDA

GO:0005504 "fatty acid binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006068 "ethanol catabolic process" evidence=IDA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0007568 "aging" evidence=IEP

GO:0008270 "zinc ion binding" evidence=IEA;ISO

GO:0018119 "peptidyl-cysteine S-nitrosylation" evidence=IEA;ISO

GO:0018467 "formaldehyde dehydrogenase activity" evidence=IEA;ISO

GO:0032496 "response to lipopolysaccharide" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0045777 "positive regulation of blood pressure" evidence=IEA;ISO

GO:0046294 "formaldehyde catabolic process" evidence=IEA;ISO

GO:0051409 "response to nitrosative stress" evidence=IEA;ISO

GO:0051775 "response to redox state" evidence=IEA;ISO

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA;ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|P12711 Adh5 "Alcohol dehydrogenase class-3" [Rattus norvegicus (taxid:10116)]

 Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
 Identities = 154/227 (67%), Positives = 172/227 (75%)

Query:     6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
             QVI CKAAVAWE  KPL IE+++VAPPQA EVRIKI+ TA+CHTDAYT SG DPEG FP 
Sbjct:     4 QVIRCKAAVAWEAGKPLSIEEIEVAPPQAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 63

Query:    66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
             ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +
Sbjct:    64 ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 122

Query:   126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
             M D  SRF+  GKPI HFMGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct:   123 MPDGTSRFTCKGKPILHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGA 182

Query:   186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKF 232
               NTAKVEPGS  AVFGLG V             SR+IGIDI+  KF
Sbjct:   183 AVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDINKDKF 229

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001523 "retinoid metabolic process" evidence=IEA

GO:0003016 "respiratory system process" evidence=IEA

GO:0005504 "fatty acid binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0018119 "peptidyl-cysteine S-nitrosylation" evidence=IEA

GO:0018467 "formaldehyde dehydrogenase activity" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0045777 "positive regulation of blood pressure" evidence=IEA

GO:0046294 "formaldehyde catabolic process" evidence=IEA

GO:0051409 "response to nitrosative stress" evidence=IEA

GO:0051775 "response to redox state" evidence=IEA

ZFIN|ZDB-GENE-011003-1 adh5 "alcohol dehydrogenase 5" [Danio rerio (taxid:7955)]

 Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
 Identities = 148/233 (63%), Positives = 174/233 (74%)

Query:     1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
             M T G+VI CKAAVAWE  KPL IE+V+VAPP+A EVR+KI  T +CHTDAYT SG DPE
Sbjct:     1 MDTTGKVIKCKAAVAWEAGKPLTIEEVEVAPPKAHEVRVKIHATGVCHTDAYTLSGSDPE 60

Query:    61 GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
             GLFP ILGHE AG VESVGEGVT+ +PGD VIP Y  +C ECKFCK+ KTNLC K+R   
Sbjct:    61 GLFPVILGHEGAGTVESVGEGVTKFKPGDTVIPLYVPQCGECKFCKNPKTNLCQKIRVTQ 120

Query:   121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
             G G +M D  SRF+  GK ++HFMGTSTFS+YTVV ++S+AK+D  APLDKVCLLGCG+ 
Sbjct:   121 GQG-LMPDNTSRFTCKGKQLFHFMGTSTFSEYTVVAEISLAKVDEHAPLDKVCLLGCGIS 179

Query:   181 TGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFD 233
             TG GA  NTAKVE GS  AVFGLG V             +R+IGID++P KF+
Sbjct:   180 TGYGAAINTAKVEAGSTCAVFGLGAVGLAVVMGCKSAGATRIIGIDVNPDKFE 232

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:87929 Adh5 "alcohol dehydrogenase 5 (class III), chi polypeptide" [Mus musculus (taxid:10090)]

 Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
 Identities = 152/227 (66%), Positives = 172/227 (75%)

Query:     6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
             QVI CKAAVAWE  KPL IE+++VAPP+A EVRIKIL TA+CHTDAYT SG DPEG FP 
Sbjct:     4 QVIRCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKILATAVCHTDAYTLSGADPEGCFPV 63

Query:    66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
             ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +
Sbjct:    64 ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 122

Query:   126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
             M D  SRF+  GK ++HFMGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct:   123 MPDGTSRFTCKGKSVFHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGA 182

Query:   186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKF 232
               NTAKVEPGS  AVFGLG V             SR+IGIDI+  KF
Sbjct:   183 AVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDINKDKF 229

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001523 "retinoid metabolic process" evidence=IMP

GO:0003016 "respiratory system process" evidence=IMP

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=ISO;IDA

GO:0005504 "fatty acid binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0006068 "ethanol catabolic process" evidence=ISO

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0018119 "peptidyl-cysteine S-nitrosylation" evidence=IMP

GO:0018467 "formaldehyde dehydrogenase activity" evidence=ISO

GO:0032496 "response to lipopolysaccharide" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0045777 "positive regulation of blood pressure" evidence=IMP

GO:0046294 "formaldehyde catabolic process" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0051409 "response to nitrosative stress" evidence=IMP

GO:0051775 "response to redox state" evidence=ISO

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IMP

GO:0055114 "oxidation-reduction process" evidence=ISO;IMP;IDA

DICTYBASE|DDB_G0281865 adh5 "alcohol dehydrogenase, class 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 148/232 (63%), Positives = 168/232 (72%)

Query:     1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
             MSTEG+VITCKAAVAWE  KPLVIED++V PPQ GEVRIKIL+T +CHTD+YT SG DPE
Sbjct:     1 MSTEGKVITCKAAVAWEAKKPLVIEDIEVQPPQKGEVRIKILYTGVCHTDSYTLSGSDPE 60

Query:    61 GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
             G+FPCILGHE  GIVES+GEGVT V+ GDHVIP Y  EC  CKFC S KTNLC K+R   
Sbjct:    61 GIFPCILGHEGGGIVESIGEGVTSVKVGDHVIPLYIPECGTCKFCTSNKTNLCSKIRITQ 120

Query:   121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
             G G  M D  +RF   GK I+HFMGTSTFSQYTV+ ++S   +   APLDKVCLLGCG+ 
Sbjct:   121 GKG-QMPDGTTRFKCKGKEIFHFMGTSTFSQYTVLPEISCCVVREDAPLDKVCLLGCGIT 179

Query:   181 TGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKF 232
             TG GA   TAKVE GS VA+FGLG V              R+IGID +  KF
Sbjct:   180 TGFGAAKITAKVEEGSTVAIFGLGAVGLSVAQGAVDCGAKRIIGIDNNETKF 231

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1NI89 ADH5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 152/226 (67%), Positives = 170/226 (75%)

Query:     7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCI 66
             VI CKAAVAWE  KPL IE+V+VAPP+A EVRIKI+ TALCHTDAYT SG DPEG FP I
Sbjct:     1 VIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIVATALCHTDAYTLSGADPEGCFPVI 60

Query:    67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
             LGHE AGIVESVGEGVT+V+PGD VIP Y  +C ECK+CK+ KTNLC K+R   G G +M
Sbjct:    61 LGHEGAGIVESVGEGVTKVKPGDTVIPLYIPQCGECKYCKNPKTNLCQKIRFTQGKG-LM 119

Query:   127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
              D   RF+  GK IYHFMGTSTFS+YTVV D+SVAKIDP AP DKVCLLGCG+ TG GA 
Sbjct:   120 PDGTIRFTCKGKQIYHFMGTSTFSEYTVVADISVAKIDPAAPFDKVCLLGCGISTGYGAA 179

Query:   187 WNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKF 232
              NTAKVEPGS  AVFGLG V             SR+IGIDI+   +
Sbjct:   180 VNTAKVEPGSTCAVFGLGGVGLATVMGCKAAGASRIIGIDINKNTY 225

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

UNIPROTKB|F1NKS5 ADH5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 152/226 (67%), Positives = 170/226 (75%)

Query:     7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCI 66
             VI CKAAVAWE  KPL IE+V+VAPP+A EVRIKI+ TALCHTDAYT SG DPEG FP I
Sbjct:     5 VIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIVATALCHTDAYTLSGADPEGCFPVI 64

Query:    67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
             LGHE AGIVESVGEGVT+V+PGD VIP Y  +C ECK+CK+ KTNLC K+R   G G +M
Sbjct:    65 LGHEGAGIVESVGEGVTKVKPGDTVIPLYIPQCGECKYCKNPKTNLCQKIRVTQGKG-LM 123

Query:   127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
              D   RF+  GK IYHFMGTSTFS+YTVV D+SVAKIDP AP DKVCLLGCG+ TG GA 
Sbjct:   124 PDGTIRFTCKGKQIYHFMGTSTFSEYTVVADISVAKIDPAAPFDKVCLLGCGISTGYGAA 183

Query:   187 WNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKF 232
              NTAKVEPGS  AVFGLG V             SR+IGIDI+   +
Sbjct:   184 VNTAKVEPGSTCAVFGLGGVGLATVMGCKAAGASRIIGIDINKNTY 229

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001523 "retinoid metabolic process" evidence=IEA

GO:0003016 "respiratory system process" evidence=IEA

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=IEA

GO:0005504 "fatty acid binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0018119 "peptidyl-cysteine S-nitrosylation" evidence=IEA

GO:0018467 "formaldehyde dehydrogenase activity" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0045777 "positive regulation of blood pressure" evidence=IEA

GO:0046294 "formaldehyde catabolic process" evidence=IEA

GO:0051409 "response to nitrosative stress" evidence=IEA

GO:0051775 "response to redox state" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

UNIPROTKB|F1NKS6 ADH5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 152/226 (67%), Positives = 170/226 (75%)

Query:     7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCI 66
             VI CKAAVAWE  KPL IE+V+VAPP+A EVRIKI+ TALCHTDAYT SG DPEG FP I
Sbjct:     1 VIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIVATALCHTDAYTLSGADPEGCFPVI 60

Query:    67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
             LGHE AGIVESVGEGVT+V+PGD VIP Y  +C ECK+CK+ KTNLC K+R   G G +M
Sbjct:    61 LGHEGAGIVESVGEGVTKVKPGDTVIPLYIPQCGECKYCKNPKTNLCQKIRFTQGKG-LM 119

Query:   127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
              D   RF+  GK IYHFMGTSTFS+YTVV D+SVAKIDP AP DKVCLLGCG+ TG GA 
Sbjct:   120 PDGTIRFTCKGKQIYHFMGTSTFSEYTVVADISVAKIDPAAPFDKVCLLGCGISTGYGAA 179

Query:   187 WNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKF 232
              NTAKVEPGS  AVFGLG V             SR+IGIDI+   +
Sbjct:   180 VNTAKVEPGSTCAVFGLGGVGLATVMGCKAAGASRIIGIDINKNTY 225

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

UNIPROTKB|F1PLM5 F1PLM5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
 Identities = 152/229 (66%), Positives = 172/229 (75%)

Query:     6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
             QVI CKAAVAWE  KPL IE+V+VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP 
Sbjct:     6 QVIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGSFPV 65

Query:    66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
             ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +
Sbjct:    66 ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 124

Query:   126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
             M D  SRF+  GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct:   125 MPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 184

Query:   186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
               NTAKVEPGS  AVFGLG V             SR+IG+DI+  KF R
Sbjct:   185 ALNTAKVEPGSTCAVFGLGGVGLATIMGCKVAGASRIIGVDINKDKFSR 233

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|J9PA83 ADH5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
 Identities = 152/229 (66%), Positives = 172/229 (75%)

Query:     6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
             QVI CKAAVAWE  KPL IE+V+VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP 
Sbjct:     4 QVIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGSFPV 63

Query:    66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
             ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +
Sbjct:    64 ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 122

Query:   126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
             M D  SRF+  GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct:   123 MPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 182

Query:   186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
               NTAKVEPGS  AVFGLG V             SR+IG+DI+  KF R
Sbjct:   183 ALNTAKVEPGSTCAVFGLGGVGLATIMGCKVAGASRIIGVDINKDKFSR 231

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96533	ADHX_ARATH	1, ., 1, ., 1, ., 2, 8, 4	0.9270	0.9588	0.6147	yes	no
P19854	ADHX_HORSE	1, ., 1, ., 1, ., 2, 8, 4	0.6855	0.9382	0.6096	yes	no
A2XAZ3	ADHX_ORYSI	1, ., 1, ., 1, ., 2, 8, 4	0.9237	0.9711	0.6194	N/A	no
P12711	ADHX_RAT	1, ., 1, ., 1, ., 2, 8, 4	0.7117	0.9382	0.6096	yes	no
O74685	FADH_PICPA	1, ., 1, ., 1, ., -	0.6017	0.9465	0.6068	yes	no
P78870	FADH1_SCHPO	1, ., 1, ., 1, ., -	0.6406	0.9465	0.6084	yes	no
P93629	ADHX_MAIZE	1, ., 1, ., 1, ., 2, 8, 4	0.9276	0.9670	0.6167	N/A	no
Q0DWH1	ADHX_ORYSJ	1, ., 1, ., 1, ., 2, 8, 4	0.9194	0.9711	0.6194	yes	no
P80572	ADHX_PEA	1, ., 1, ., 1, ., 2, 8, 4	0.8771	0.9711	0.6243	N/A	no
O19053	ADHX_RABIT	1, ., 1, ., 1, ., 2, 8, 4	0.6899	0.9382	0.6096	yes	no
Q17335	ADHX_CAEEL	1, ., 1, ., 1, ., 2, 8, 4	0.6508	0.9506	0.6015	yes	no
Q3ZC42	ADHX_BOVIN	1, ., 1, ., 1, ., 2, 8, 4	0.6899	0.9382	0.6096	yes	no
P46415	ADHX_DROME	1, ., 1, ., 1, ., 2, 8, 4	0.6724	0.9506	0.6094	yes	no
P11766	ADHX_HUMAN	1, ., 1, ., 1, ., 2, 8, 4	0.6899	0.9382	0.6096	yes	no
P28474	ADHX_MOUSE	1, ., 1, ., 1, ., 2, 8, 4	0.7030	0.9382	0.6096	yes	no
Q54TC2	ADHX_DICDI	1, ., 1, ., 1, ., 2, 8, 4	0.6724	0.9506	0.6094	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.963
4th Layer	1.1.1.1	0.946

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSH-FDH1	glutathione-dependent formaldehyde dehydrogenase (380 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XI.3391.1	pyruvate decarboxylase (EC-4.1.1.1) (574 aa)						•			0.899
	gw1.V.2645.1	hypothetical protein (479 aa)						•			0.899
	gw1.III.2325.1	SubName- Full=Putative uncharacterized protein; (514 aa)						•			0.899
	gw1.4555.2.1	annotation not avaliable (88 aa)						•			0.899
	gw1.134.62.1	hypothetical protein (453 aa)						•			0.899
	grail3.0005008802	aldehyde dehydrogenase (NAD+) (EC-1.2.1.3) (543 aa)						•			0.899
	fgenesh4_pg.C_LG_II000742	hypothetical protein (480 aa)						•			0.899
	eugene3.01840014	pyruvate decarboxylase (549 aa)						•			0.899
	eugene3.00060891	pyruvate decarboxylase (EC-4.1.1.1) (606 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_XVI0442	pyruvate decarboxylase (EC-4.1.1.1) (606 aa)						•			0.899

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	243
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	1e-171
cd08301	369	cd08301, alcohol_DH_plants, Plant alcohol dehydrog	1e-148
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	1e-128
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	1e-124
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	1e-121
TIGR02818	368	TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat	1e-120
PLN02740	381	PLN02740, PLN02740, Alcohol dehydrogenase-like	1e-116
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	1e-108
PLN02827	378	PLN02827, PLN02827, Alcohol dehydrogenase-like	2e-98
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	2e-95
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	1e-72
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	2e-72
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	4e-68
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	2e-52
TIGR03451	358	TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi	3e-52
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	1e-51
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	2e-42
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	1e-39
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	9e-38
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	8e-37
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	2e-36
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	8e-35
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	2e-34
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	5e-34
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	9e-32
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	1e-31
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	1e-31
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	2e-31
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	1e-30
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	1e-30
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	3e-30
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	6e-30
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	1e-29
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	1e-28
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	1e-27
pfam08240	108	pfam08240, ADH_N, Alcohol dehydrogenase GroES-like	3e-27
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	5e-27
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	1e-26
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	2e-26
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	9e-26
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	2e-25
cd05281	341	cd05281, TDH, Threonine dehydrogenase	9e-25
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	1e-24
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	1e-24
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	4e-22
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	3e-21
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	1e-20
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	2e-20
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	5e-19
PRK10309	347	PRK10309, PRK10309, galactitol-1-phosphate dehydro	5e-19
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	9e-19
cd08265	384	cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD	2e-18
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	5e-18
cd08287	345	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase	2e-17
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	3e-17
TIGR03201	349	TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1	3e-17
PRK10083	339	PRK10083, PRK10083, putative oxidoreductase; Provi	9e-17
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	2e-16
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	3e-15
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	4e-15
PLN02586	360	PLN02586, PLN02586, probable cinnamyl alcohol dehy	9e-15
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	3e-14
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	6e-14
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	8e-14
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	2e-13
TIGR02819	393	TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenas	3e-13
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	1e-12
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	4e-12
PLN02702	364	PLN02702, PLN02702, L-idonate 5-dehydrogenase	4e-12
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	8e-12
cd08230	355	cd08230, glucose_DH, Glucose dehydrogenase	2e-11
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	2e-11
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	2e-11
cd08262	341	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD	4e-11
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	8e-11
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	2e-10
cd08292	324	cd08292, ETR_like_2, 2-enoyl thioester reductase (	1e-09
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	2e-09
PLN02178	375	PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase	3e-09
cd08242	319	cd08242, MDR_like, Medium chain dehydrogenases/red	3e-09
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	7e-09
TIGR03366	280	TIGR03366, HpnZ_proposed, putative phosphonate cat	8e-09
PRK10754	327	PRK10754, PRK10754, quinone oxidoreductase, NADPH-	2e-08
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	5e-08
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	8e-08
PRK09880	343	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro	1e-07
cd08252	336	cd08252, AL_MDR, Arginate lyase and other MDR fami	3e-07
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	3e-07
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	6e-07
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	7e-07
TIGR02822	329	TIGR02822, adh_fam_2, zinc-binding alcohol dehydro	7e-07
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	1e-06
cd08251	303	cd08251, polyketide_synthase, polyketide synthase	4e-06
cd08246	393	cd08246, crotonyl_coA_red, crotonyl-CoA reductase	4e-06
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	2e-05
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	2e-05
smart00829	287	smart00829, PKS_ER, Enoylreductase	5e-05
TIGR01751	398	TIGR01751, crot-CoA-red, crotonyl-CoA reductase	5e-05
TIGR02817	336	TIGR02817, adh_fam_1, zinc-binding alcohol dehydro	8e-05
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	2e-04
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	3e-04
TIGR03026	409	TIGR03026, NDP-sugDHase, nucleotide sugar dehydrog	8e-04
COG0677	436	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate de	0.001
cd05288	329	cd05288, PGDH, Prostaglandin dehydrogenases	0.001
cd08291	324	cd08291, ETR_like_1, 2-enoyl thioester reductase (	0.002
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	0.003
cd05280	325	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putativ	0.004

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score =  476 bits (1228), Expect = e-171
 Identities = 177/226 (78%), Positives = 193/226 (85%), Gaps = 1/226 (0%)

Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           ITCKAAVAWE  KPL IE+V+VAPP+AGEVRIKIL T +CHTDAYT SG DPEGLFP IL
Sbjct: 1   ITCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVIL 60

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           GHE AGIVESVGEGVT V+PGDHVIP Y  EC ECKFCKSGKTNLC K+R   G G +M 
Sbjct: 61  GHEGAGIVESVGEGVTSVKPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKG-LMP 119

Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
           D  SRFS  GKPIYHFMGTSTFS+YTVV ++SVAKI+P+APLDKVCLLGCGV TG GAV 
Sbjct: 120 DGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEAPLDKVCLLGCGVTTGYGAVL 179

Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           NTAKVEPGS VAVFGLG VGLAV +GAKAAGASR+IGIDI+P KF+
Sbjct: 180 NTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFE 225

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase

 Score =  417 bits (1075), Expect = e-148
 Identities = 162/227 (71%), Positives = 189/227 (83%)

Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           ITCKAAVAWE  KPLVIE+V+VAPPQA EVRIKIL T+LCHTD Y W  K    LFP IL
Sbjct: 1   ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRIL 60

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           GHEAAGIVESVGEGVT+++PGDHV+P +  EC+EC+ CKS K+N+C  +R  T  GVM+N
Sbjct: 61  GHEAAGIVESVGEGVTDLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMIN 120

Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
           D KSRFSINGKPIYHF+GTSTFS+YTVVH   VAKI+P+APLDKVCLL CGV TGLGA W
Sbjct: 121 DGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAW 180

Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           N AKV+ GS VA+FGLG VGLAVAEGA+  GASR+IG+D++P KF++
Sbjct: 181 NVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQ 227

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score =  365 bits (940), Expect = e-128
 Identities = 149/227 (65%), Positives = 173/227 (76%), Gaps = 3/227 (1%)

Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           I CKAAVAWE  KPLVIE+++VAPP+A EVRIK+L T++CHTD     G     LFP IL
Sbjct: 1   IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGF-KATLFPVIL 59

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           GHE AGIVESVGEGVT ++PGD VIP +  +C EC  C+SGKTNLC K R A  +G +M 
Sbjct: 60  GHEGAGIVESVGEGVTNLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYR-ANESG-LMP 117

Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
           D  SRF+  GK IYHF+GTSTFSQYTVV +  VAKIDP APL+ VCLLGCG  TG GA W
Sbjct: 118 DGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAW 177

Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           NTAKVEPGS VAVFGLG VGL+   GAK AGASR+IG+DI+  KF++
Sbjct: 178 NTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEK 224

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score =  355 bits (913), Expect = e-124
 Identities = 141/226 (62%), Positives = 173/226 (76%), Gaps = 2/226 (0%)

Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           +  +AAVA E  KPL IE+V + PP+AGEV ++I  T +CHTDA+T SG DPEG FP +L
Sbjct: 1   MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEG-FPAVL 59

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           GHE AGIVE+VGEGVT V+PGDHVI  +  EC +CKFC SGK NLC  +R   G G M  
Sbjct: 60  GHEGAGIVEAVGEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMP- 118

Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
           D  +R S NG P+YH++G STF++YTVVH++S+ KIDP APL+K CLLGCGV TG+GAV 
Sbjct: 119 DGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVV 178

Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           NTAKVEPG  VAVFGLG VGLA  +GAKAAGA R+I +DI+P+K +
Sbjct: 179 NTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLE 224

Length = 366

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score =  349 bits (898), Expect = e-121
 Identities = 138/230 (60%), Positives = 169/230 (73%), Gaps = 2/230 (0%)

Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
           T G+VI CKAAV WEP KP  IE+++VAPP+A EVRIKI+ T +C +D +  SGK     
Sbjct: 1   TAGKVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV-TP 59

Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
           FP ILGHEAAGIVESVGEGVT V+PGD VIP +  +C +C+ C + ++NLC K       
Sbjct: 60  FPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQ 119

Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG 182
           G+M  D  SRF+  GKPI+HF+GTSTFS+YTVV +++VAKID  APL+KVCL+GCG  TG
Sbjct: 120 GLMQ-DGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTG 178

Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF 232
            GA  NTAKV PGS  AVFGLG VGL+   G KAAGASR+I +DI+  KF
Sbjct: 179 YGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKF 228

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

 Score =  346 bits (889), Expect = e-120
 Identities = 147/223 (65%), Positives = 177/223 (79%), Gaps = 1/223 (0%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           +AAVAW   +PL IE+V V  PQ GEV ++I+ T +CHTDA+T SG DPEG+FP ILGHE
Sbjct: 3   RAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHE 62

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
            AGIVE+VGEGVT V+ GDHVIP Y AEC ECKFC SGKTNLC  VR   G G+ M D  
Sbjct: 63  GAGIVEAVGEGVTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGL-MPDGT 121

Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA 190
           SRFS +G+PIYH+MG STFS+YTVV ++S+AKI+P APL++VCLLGCGV TG+GAV NTA
Sbjct: 122 SRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTA 181

Query: 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           KVE G  VAVFGLG +GL+V +GA+ A ASR+I IDI+P KF+
Sbjct: 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFE 224

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368

>gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like

 Score =  338 bits (868), Expect = e-116
 Identities = 142/237 (59%), Positives = 183/237 (77%), Gaps = 3/237 (1%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DP 59
             T+G+VITCKAAVAW P +PLV+E+++V PPQ  EVRIKIL+T++CHTD   W G+ + 
Sbjct: 2   SETQGKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEA 61

Query: 60  EGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGA 119
           +  +P ILGHEAAGIVESVGEGV +++ GDHVIP +  EC +C++CK  KTNLC   R  
Sbjct: 62  QRAYPRILGHEAAGIVESVGEGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVD 121

Query: 120 TGAGVMMNDRKSRFSI--NGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGC 177
               VM+ND K+RFS   +G+PIYHF+ TSTF++YTV+    V KIDP APL K+ LL C
Sbjct: 122 PFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVVKIDPNAPLKKMSLLSC 181

Query: 178 GVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           GV TG+GA WNTA V+ GS VA+FGLG VGLAVAEGA+A GAS++IG+DI+P+KF++
Sbjct: 182 GVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEK 238

Length = 381

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score =  315 bits (808), Expect = e-108
 Identities = 136/225 (60%), Positives = 169/225 (75%), Gaps = 2/225 (0%)

Query: 10  CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH 69
           CKAAV WE  KPL IE+++VAPP+AGEVRIK++ T +CHTD +   GK P    P ILGH
Sbjct: 1   CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP-TPLPVILGH 59

Query: 70  EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
           E AGIVES+G GVT ++PGD VIP +  +C +CK C + + NLC K RG  G G+M  D 
Sbjct: 60  EGAGIVESIGPGVTTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMS-DG 118

Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT 189
            SRF+  GKPI+HF+GTSTF++YTVV ++S+AKIDP APL+KVCL+GCG  TG GA  NT
Sbjct: 119 TSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNT 178

Query: 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           AKV PGS  AVFGLG VGL+V  G KAAGASR+I +DI+  KF++
Sbjct: 179 AKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEK 223

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|215442 PLN02827, PLN02827, Alcohol dehydrogenase-like

 Score =  291 bits (747), Expect = 2e-98
 Identities = 128/229 (55%), Positives = 168/229 (73%), Gaps = 4/229 (1%)

Query: 6   QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
            VITC+AAVAW   + LV+E+V+V+PPQ  E+RIK++ T+LC +D   W  +    LFP 
Sbjct: 9   NVITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQ---ALFPR 65

Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
           I GHEA+GIVES+GEGVTE + GDHV+  +  EC  C+ C SGK+N+C +V G    GVM
Sbjct: 66  IFGHEASGIVESIGEGVTEFEKGDHVLTVFTGECGSCRHCISGKSNMC-QVLGLERKGVM 124

Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
            +D+K+RFSI GKP+YH+   S+FS+YTVVH     K+DP APL K+CLL CGV  GLGA
Sbjct: 125 HSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGA 184

Query: 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
            WN A V  GS V +FGLGTVGL+VA+GAK  GAS++IG+DI+P+K ++
Sbjct: 185 AWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEK 233

Length = 378

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score =  283 bits (726), Expect = 2e-95
 Identities = 108/223 (48%), Positives = 142/223 (63%), Gaps = 3/223 (1%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           +AAV  E  KPL IE+V++  P  GEV ++I    LCH+D +  +G  P  L P +LGHE
Sbjct: 2   RAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLPAPL-PAVLGHE 60

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
            AG+VE VG GVT V+PGDHV+  +   C  C++C  G+ NLC    GA   G  + D  
Sbjct: 61  GAGVVEEVGPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCD--LGAGILGGQLPDGT 118

Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA 190
            RF+ +G+P+    G  TF++YTVV + SV KID   PLD+  LLGCGV TG+GAV NTA
Sbjct: 119 RRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTA 178

Query: 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           +V PG  VAV G G VGL   +GA+ AGASR+I +D  P+K +
Sbjct: 179 RVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLE 221

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score =  225 bits (575), Expect = 1e-72
 Identities = 99/227 (43%), Positives = 138/227 (60%), Gaps = 3/227 (1%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KAAV W P +P  +E++++  P+AGEV +K++ + LCH+D +  +G  P   +P + GHE
Sbjct: 3   KAAVLWGPGQPWEVEEIELDDPKAGEVLVKLVASGLCHSDEHLVTGDLPMPRYPILGGHE 62

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG-AGVMMNDR 129
            AG+V  VG GVT V+PGDHV+  +   C  C++C +G  NLC    GA    G  ++D 
Sbjct: 63  GAGVVTKVGPGVTGVKPGDHVVLSFIPACGRCRWCSTGLQNLCD--LGAALLTGSQISDG 120

Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT 189
             RF  +G+ +       TFS+YTVV + SV KID   PLDK CL+GCGVPTG G+  N 
Sbjct: 121 TYRFHADGQDVGQMCLLGTFSEYTVVPEASVVKIDDDIPLDKACLVGCGVPTGWGSAVNI 180

Query: 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL 236
           A V PG  V V G+G VG+   +GA  AGA +VI +D    K ++ L
Sbjct: 181 ADVRPGDTVVVMGIGGVGINAVQGAAVAGARKVIAVDPVEFKREQAL 227

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score =  224 bits (574), Expect = 2e-72
 Identities = 97/237 (40%), Positives = 131/237 (55%), Gaps = 8/237 (3%)

Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           +   AAV  EP  P V+EDV++  P+  EV ++I+ T +CHTD     G  P    P +L
Sbjct: 1   MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP-TPLPAVL 59

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           GHE AG+VE+VG  VT ++PGDHV+  + A C EC  C SG    C        +G   +
Sbjct: 60  GHEGAGVVEAVGSAVTGLKPGDHVVLSF-ASCGECANCLSGHPAYCENFFPLNFSGRRPD 118

Query: 128 DRKSRFSINGKPIY-HFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
                   +G P++ HF G S+F+ Y VVH+ +V K+D   PL+ +  LGCG+ TG GAV
Sbjct: 119 GSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGAGAV 178

Query: 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMSL 243
            N  K  PGS +AVFG G VGLA    AK AG + +I +DI   +       LA  L
Sbjct: 179 LNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRL-----ELAKEL 230

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score =  214 bits (546), Expect = 4e-68
 Identities = 104/224 (46%), Positives = 135/224 (60%), Gaps = 7/224 (3%)

Query: 20  KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVG 79
           +PLVIE+V++ PP  GEV +KI    LCH+D    +G  P  L P  LGHEAAG+V  VG
Sbjct: 19  RPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPRPL-PMALGHEAAGVVVEVG 77

Query: 80  EGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKP 139
           EGVT+++ GDHV+  +   C  C+ C  G+  LC     A GAG +++  + R  + G  
Sbjct: 78  EGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGR-RLRLRGGE 136

Query: 140 IYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVA 199
           I H +G S F++Y VV   SV KID   PL+   L GC V TG+GAV NTA V PG  VA
Sbjct: 137 INHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVA 196

Query: 200 VFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMSL 243
           V GLG VGL+   GA AAGAS+V+ +D++  K      ALA  L
Sbjct: 197 VVGLGGVGLSALLGAVAAGASQVVAVDLNEDKL-----ALAREL 235

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score =  172 bits (438), Expect = 2e-52
 Identities = 79/225 (35%), Positives = 105/225 (46%), Gaps = 25/225 (11%)

Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           +T KAAV  +  +PL IE+V V  P  GEV IK+    +CHTD +   G  P    P I 
Sbjct: 2   MTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIP 61

Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE  G V  VGEGVT ++ GD V +      C EC++C+SG  NLC   +         
Sbjct: 62  GHEIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITG------ 115

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
                 ++ +G           +++Y VV    V KI     L +   L C   T   A+
Sbjct: 116 ------YTTDG----------GYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRAL 159

Query: 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
              A V+PG  VAV G G +G    + AKA GA  VI I    +K
Sbjct: 160 -KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEK 202

Length = 339

>gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase

 Score =  172 bits (438), Expect = 3e-52
 Identities = 91/227 (40%), Positives = 124/227 (54%), Gaps = 12/227 (5%)

Query: 9   TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTD-AYTWSGKDPEGLFPCIL 67
           T +  +A     P+ +E + V  P  GEV + I    +CHTD  Y   G + E  FP +L
Sbjct: 1   TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGINDE--FPFLL 58

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           GHEAAG+VE+VGEGVT+V PGD+V+  ++A C +C+ CK G+   C     AT    + +
Sbjct: 59  GHEAAGVVEAVGEGVTDVAPGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTD 118

Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
                    G  +   +G   F++ T+VH     K+DP A      LLGCGV  GLGA  
Sbjct: 119 ---------GTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAV 169

Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           NT  V+ G  VAV G G VG A   GA  AGAS++I +DID +K + 
Sbjct: 170 NTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEW 216

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score =  171 bits (434), Expect = 1e-51
 Identities = 77/225 (34%), Positives = 117/225 (52%), Gaps = 6/225 (2%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KAAV   PN PL IE++ V  P+ GE+ I++    +CH+D +   G+ P    P +LGHE
Sbjct: 2   KAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELP-FPPPFVLGHE 60

Query: 71  AAGIVESVGEGVT---EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
            +G V  VG  V     +  GD V+  +   C +C++C  GK NLC            + 
Sbjct: 61  ISGEVVEVGPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLY 120

Query: 128 DRKSR-FSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
           D  +R F ++G P+Y +      ++Y VV   ++A +       +  +LGC   T  GA+
Sbjct: 121 DGTTRLFRLDGGPVYMYSM-GGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGAL 179

Query: 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
            + A V PG  VAV G+G VG +  + AKA GAS +I +D+  +K
Sbjct: 180 KHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEK 224

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  145 bits (367), Expect = 2e-42
 Identities = 60/202 (29%), Positives = 83/202 (41%), Gaps = 28/202 (13%)

Query: 36  EVRIKILFTALCHTDAYTWSGKDPEGL-FPCILGHEAAGIVESVGEGVTEVQPGDHVIPC 94
           EV +++    LC TD +   G  P     P ILGHE AG+V  VG GVT V+ GD V+  
Sbjct: 1   EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVL 60

Query: 95  YQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTV 154
               C  C+ C+                                 I        F++Y V
Sbjct: 61  PNLGCGTCELCRELCPGGG--------------------------ILGEGLDGGFAEYVV 94

Query: 155 VHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGA 214
           V   ++  +     L++  LL   + T   A+     ++PG  V V G G VGL  A+ A
Sbjct: 95  VPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLA 154

Query: 215 KAAGASRVIGIDIDPKKFDRVL 236
           KAAGA RVI  D   +K +   
Sbjct: 155 KAAGA-RVIVTDRSDEKLELAK 175

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score =  139 bits (352), Expect = 1e-39
 Identities = 80/226 (35%), Positives = 106/226 (46%), Gaps = 25/226 (11%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KAA+  +PNKPL IE+V    P  GEV IK+    +C+ D   W G  P G +P ILGHE
Sbjct: 2   KAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHE 61

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
             G VE VGEGV   +PGD VI  Y   C +C++C SG+ NLC                 
Sbjct: 62  IVGTVEEVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLCRNRA------------- 108

Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA 190
                     Y       F++Y  V + S+ K+      +   L  C V T + A+   A
Sbjct: 109 ---------EYGEEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHAL-KRA 158

Query: 191 KVEPGSIVAV-FGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV 235
            V+ G  V V    G VG+   + AKA GA RVI +   P+K   +
Sbjct: 159 GVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKIL 203

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score =  134 bits (340), Expect = 9e-38
 Identities = 64/232 (27%), Positives = 95/232 (40%), Gaps = 19/232 (8%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFP-CILGH 69
           KAAV +     + +E+     P  G+V I++  T +C +D + + G +P       ILGH
Sbjct: 2   KAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGH 61

Query: 70  EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
           E  G V  VG  V   + GD V+      C  C++C++G+ NLC        AG+     
Sbjct: 62  EFVGEVVEVGV-VRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGG-- 118

Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT 189
                I+G           F++Y  V         P    ++   L   + T        
Sbjct: 119 -----IDG----------GFAEYVRVPADFNLAKLPDGIDEEAAALTEPLATAYHGHAER 163

Query: 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241
           A V PG  V V G G +GL     AK  GAS VI +D  P++ +    A   
Sbjct: 164 AAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA 215

Length = 350

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score =  131 bits (333), Expect = 8e-37
 Identities = 70/226 (30%), Positives = 104/226 (46%), Gaps = 25/226 (11%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           +AAV  E  +PL I +V    P    V +++    +C +D + W G DP+   P + GHE
Sbjct: 2   RAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHE 61

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
            AG+V  VGE V+  + GD V   +   C  C +C++G +N+C                 
Sbjct: 62  FAGVVVEVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQV------------- 108

Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
                       F    +F++Y  V   DV++ ++           LGC   T   A+ +
Sbjct: 109 ---------QPGFTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRALVH 159

Query: 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
            A+V+PG  VAV G G VGL+    A A GA RVI +DID  K + 
Sbjct: 160 QARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLEL 204

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score =  131 bits (332), Expect = 2e-36
 Identities = 63/228 (27%), Positives = 94/228 (41%), Gaps = 24/228 (10%)

Query: 10  CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH 69
            +AAV   P KPL I +V +   + G V +++    +C +D +T +G+ P    P ILGH
Sbjct: 1   ARAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGH 60

Query: 70  EAAGIVESVGEGVTE------VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAG 123
           E  G V ++G GVT       ++ GD V     A C  C  C  G    C   +      
Sbjct: 61  EGVGRVVALGGGVTTDVAGEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKK----- 115

Query: 124 VMMNDRKSRFSIN-GKPIYHFMGTSTFSQYTVVH-DVSVAKIDPQAPLDKVCLLGCGVPT 181
                    +         H  G   ++++  +    ++ ++    P +      C + T
Sbjct: 116 ---------YGHEASCDDPHLSG--GYAEHIYLPPGTAIVRVPDNVPDEVAAPANCALAT 164

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229
            L A+     V  G  V V G G +GL     AK AGA RVI ID  P
Sbjct: 165 VLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSP 212

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score =  126 bits (319), Expect = 8e-35
 Identities = 70/218 (32%), Positives = 96/218 (44%), Gaps = 24/218 (11%)

Query: 20  KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESV 78
             LV+E+V V  P  GEV +K+    +CH+D +   G  P     P  LGHE AG V  V
Sbjct: 12  GLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEV 71

Query: 79  GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGK 138
           G GVT  + GD V       C  C  C+ G+ NLC            +N       I+G 
Sbjct: 72  GAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLC------------LNQGMPGLGIDG- 118

Query: 139 PIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIV 198
                     F++Y VV   ++  +    P  +  +    V T   AV    +V+PG  V
Sbjct: 119 ---------GFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETV 169

Query: 199 AVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL 236
            V GLG +GL   + AKA GA  VI +DI  +K +   
Sbjct: 170 LVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAK 206

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score =  125 bits (315), Expect = 2e-34
 Identities = 71/234 (30%), Positives = 95/234 (40%), Gaps = 30/234 (12%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KAAV      PL  E+V V  P  GEV IKI    +CHTD +   G      +P + GHE
Sbjct: 1   KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHE 60

Query: 71  AAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
             G V  VG GV   + GD V +      C  C++C+ G  NLC K    TG        
Sbjct: 61  IVGEVVEVGAGVEGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVN-TG-------- 111

Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT 189
              ++  G           +++Y V        +    PL +   L C   T   A+   
Sbjct: 112 ---YTTQG----------GYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSAL-RD 157

Query: 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMSL 243
           A   PG  VAV G+G +G    + A+A G    + I   P K +     LA  L
Sbjct: 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRE-----LARKL 205

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score =  124 bits (314), Expect = 5e-34
 Identities = 69/235 (29%), Positives = 99/235 (42%), Gaps = 28/235 (11%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KA V   P K  + E          +  +++  T++C +D + + G  P      ILGHE
Sbjct: 2   KALVYLGPGKIGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHE 61

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
             G V  VG  V  ++PGD V       C  C+FC+ G    C                 
Sbjct: 62  FVGEVVEVGSDVKRLKPGDRVSVPCITFCGRCRFCRRGYHAHCE---------------- 105

Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVH----DVSVAKIDPQAPLDKVCLLGCGVPTGL-GA 185
                NG   +         Q   V     D+++AKI    P +   +L   +PTG  GA
Sbjct: 106 -----NGLWGWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTGFHGA 160

Query: 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA 240
               A ++PGS VAV G G VGL    GA+  GA+R+I +D +P++ D    A A
Sbjct: 161 E--LAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGA 213

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  118 bits (298), Expect = 9e-32
 Identities = 72/227 (31%), Positives = 108/227 (47%), Gaps = 30/227 (13%)

Query: 10  CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCIL 67
            KAAV  E   KP  ++DV V  P  GEV +K+  + +CHTD +   G  P +   P I 
Sbjct: 1   MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIG 60

Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE AG+V +VG GV+ ++ GD V +      C +C++C++G   LC        +G   
Sbjct: 61  GHEGAGVVVAVGPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLCPN---QKNSG--- 114

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
                 ++++G          TF++Y +     V  I      ++   L C   T   A+
Sbjct: 115 ------YTVDG----------TFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKAL 158

Query: 187 WNTAKVEPGSIVAVFGL-GTVG-LAVAEGAKAAGASRVIGIDIDPKK 231
              A ++PG  V + G  G +G L V   AKA G  RVI ID+  +K
Sbjct: 159 -KKAGLKPGDWVVISGAGGGLGHLGVQY-AKAMGL-RVIAIDVGDEK 202

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score =  118 bits (298), Expect = 1e-31
 Identities = 74/234 (31%), Positives = 109/234 (46%), Gaps = 33/234 (14%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KA V  +P + L + D+    P AGEV +++    +C +D + + G++P   +P ILGHE
Sbjct: 2   KALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHE 60

Query: 71  AAGIVESVGEGVTEVQPGDHV--IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
            +G V  VGEGV  ++ GD V   P     C EC  C+ G+ N C  ++      V+   
Sbjct: 61  LSGEVVEVGEGVAGLKVGDRVVVDPYI--SCGECYACRKGRPNCCENLQ------VLGVH 112

Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA-VW 187
           R      +G           F++Y VV       +     LD+  L+    P  +GA   
Sbjct: 113 R------DG----------GFAEYIVV-PADALLVPEGLSLDQAALVE---PLAIGAHAV 152

Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241
             A V  G  V V G G +GL V + AKA GA RVI +DID ++ +      A 
Sbjct: 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGAD 205

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score =  118 bits (298), Expect = 1e-31
 Identities = 68/233 (29%), Positives = 100/233 (42%), Gaps = 46/233 (19%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KA V   P   L  ED+    P  GEV +K+    +C +D   + G       P +LGHE
Sbjct: 2   KALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGAYH-PPLVLGHE 59

Query: 71  AAGIVESVGEGVTEVQPGDHV-----IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
            +G VE VG GV ++  GD V     +PC      +C++CK G+ +LC            
Sbjct: 60  FSGTVEEVGSGVDDLAVGDRVAVNPLLPCG-----KCEYCKKGEYSLCSN---------- 104

Query: 126 MNDRKSRFSINGKPIYHFMGTS---TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP-- 180
                          Y ++G+     F++Y  V   ++ KI      ++  ++    P  
Sbjct: 105 ---------------YDYIGSRRDGAFAEYVSVPARNLIKIPDHVDYEEAAMIE---PAA 146

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
             L AV   A +  G  V V G GT+GL   +  K  GA RVI +DID +K  
Sbjct: 147 VALHAVRL-AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLA 198

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score =  118 bits (297), Expect = 2e-31
 Identities = 74/231 (32%), Positives = 103/231 (44%), Gaps = 46/231 (19%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KA V +E    L +E+V V  P   EV IK+    +C TD + + G+      P + GHE
Sbjct: 2   KALV-YEGPGELEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGAA-PPLVPGHE 59

Query: 71  AAGIVESVGEGVTEVQPGDHV-----IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
            AG+V +VG  VT  + GD V     I C      EC +C+ G+ NLC  +   T  GV 
Sbjct: 60  FAGVVVAVGSKVTGFKVGDRVAVDPNIYCG-----ECFYCRRGRPNLCENL---TAVGVT 111

Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTG 182
            N         G           F++Y VV    V KI      ++  L   L C     
Sbjct: 112 RN--------GG-----------FAEYVVVPAKQVYKIPDNLSFEEAALAEPLSC----- 147

Query: 183 LGAVW--NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
             AV   +   ++PG  V VFG G +GL +A+  K  GASRV   + + +K
Sbjct: 148 --AVHGLDLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEK 196

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score =  115 bits (291), Expect = 1e-30
 Identities = 78/247 (31%), Positives = 109/247 (44%), Gaps = 75/247 (30%)

Query: 12  AAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDPEGLF----PCI 66
           AAV   P   L +E+  +  P  GEV +++    +C +D + +  G+   G F    P +
Sbjct: 1   AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRI--GDFVVKEPMV 57

Query: 67  LGHEAAGIVESVGEGVTEVQPGDHV-----IPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           LGHE+AG V +VG GVT ++ GD V     +P     CR C+FCKSG+ NLC  +R    
Sbjct: 58  LGHESAGTVVAVGSGVTHLKVGDRVAIEPGVP-----CRTCEFCKSGRYNLCPDMR---- 108

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTS----TFSQYTVVHD----------VSV---AKID 164
                                F  T     T  +Y V H           VS+   A ++
Sbjct: 109 ---------------------FAATPPVDGTLCRY-VNHPADFCHKLPDNVSLEEGALVE 146

Query: 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIG 224
           P +    V +  C            A V PG  V VFG G +GL  A  AKA GA++V+ 
Sbjct: 147 PLS----VGVHAC----------RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVV 192

Query: 225 IDIDPKK 231
            DIDP +
Sbjct: 193 TDIDPSR 199

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score =  115 bits (290), Expect = 1e-30
 Identities = 66/222 (29%), Positives = 94/222 (42%), Gaps = 25/222 (11%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KA +     +   IE+V    P   EV IK+ +  LC+ D     G  P   +P ILGHE
Sbjct: 2   KAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHE 61

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
             G VE VGE V   +PGD V     A    C++C+SG+   C                K
Sbjct: 62  VVGTVEEVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYC----------------K 105

Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA 190
           +R    G+ +  F     F++Y  V   S+ K+ P    +   ++ C        +   A
Sbjct: 106 NRLGY-GEELDGF-----FAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGL-RRA 158

Query: 191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK 231
            V+ G  V V G  G VG+   + AKA GA +VI +     K
Sbjct: 159 GVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESK 199

Length = 334

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score =  114 bits (288), Expect = 3e-30
 Identities = 69/243 (28%), Positives = 100/243 (41%), Gaps = 46/243 (18%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KAAV   PN  + +E+V V  P  GEV +K+    +C TD     G   +   P ILGHE
Sbjct: 2   KAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHE 60

Query: 71  AAGIVESVGEGVTEVQPGD-----HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
            AG +  VG+GVT  + GD       +PC      EC +C  G  N+C   +        
Sbjct: 61  IAGEIVEVGDGVTGFKVGDRVFVAPHVPCG-----ECHYCLRGNENMCPNYKKFG----- 110

Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA-----KIDPQAPLDKVCL---LGC 177
                            + G   F++Y  V   +V      K+      ++  L   L C
Sbjct: 111 ---------------NLYDG--GFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALVEPLAC 153

Query: 178 GVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237
            +          A ++PG  V V G G +GL  A  AKA+GA +VI  D++  + +    
Sbjct: 154 CI-----NAQRKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKK 208

Query: 238 ALA 240
             A
Sbjct: 209 LGA 211

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score =  113 bits (285), Expect = 6e-30
 Identities = 56/214 (26%), Positives = 91/214 (42%), Gaps = 23/214 (10%)

Query: 19  NKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTW-SGKDPEGLFPCILGHEAAGIVES 77
           ++ + + +  V  P  GEV +++  + LC +D + +  G         I GHE AG+V +
Sbjct: 9   DRTVELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVA 68

Query: 78  VGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSING 137
           VG GVT  + GD V+  +   C  C+ C+ G   LC                      + 
Sbjct: 69  VGPGVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLC---------------------TSK 107

Query: 138 KPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSI 197
           +  Y +      ++Y +V + ++  +          LL CG+ T   A+     V     
Sbjct: 108 RAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHAL-RRVGVSGRDT 166

Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
           V V G G VGL     A+A GA  VIG+D  P++
Sbjct: 167 VLVVGAGPVGLGALMLARALGAEDVIGVDPSPER 200

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score =  113 bits (284), Expect = 1e-29
 Identities = 70/255 (27%), Positives = 104/255 (40%), Gaps = 52/255 (20%)

Query: 13  AVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTD--AYTWSG-----KDPEGL--- 62
           A  +   K + +E+V   P + GEV+IK+ +  +C +D   Y   G      +       
Sbjct: 3   AARYHGRKDIRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYL-DGPIFIPTEGHPHLTG 61

Query: 63  --FPCILGHEAAGIVESVGEGVTEVQPGDHVI--PCYQAECRECKFCKSGKTNLCGKVRG 118
              P  LGHE +G+V  VG GVT  + GD V+  P  +  C  C  CK G  NLC  + G
Sbjct: 62  ETAPVTLGHEFSGVVVEVGSGVTGFKVGDRVVVEPTIK--CGTCGACKRGLYNLCDSL-G 118

Query: 119 ATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 178
             G G             G           F++Y VV    V K+    PL++  L+   
Sbjct: 119 FIGLGGG----------GG----------GFAEYVVVPAYHVHKLPDNVPLEEAALVE-- 156

Query: 179 VPT--GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP------K 230
            P      AV   +  +PG    V G G +GL      KAAGAS++I  +         +
Sbjct: 157 -PLAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAE 214

Query: 231 KF--DRVLNALAMSL 243
           +     VL+   + +
Sbjct: 215 ELGATIVLDPTEVDV 229

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score =  111 bits (279), Expect = 1e-28
 Identities = 71/224 (31%), Positives = 98/224 (43%), Gaps = 14/224 (6%)

Query: 13  AVAWEPNKPLVIEDVQVAPP---QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH 69
           A+ W     + +E+V    P      +  +++  TA+C +D + + G  P      ILGH
Sbjct: 3   ALVWHGKGDVRVEEV--PDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKKGDILGH 60

Query: 70  EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
           E  G+VE VG  V  ++ GD V+  +   C EC +CK G  + C     +     +    
Sbjct: 61  EFMGVVEEVGPEVRNLKVGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHA 120

Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVH----DVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
            +   I G    H  G     Q   V     DV   KI      +K   L   +PTG  A
Sbjct: 121 GA--GIFGYS--HLTGGYAGGQAEYVRVPFADVGPFKIPDDLSDEKALFLSDILPTGYHA 176

Query: 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229
               A+V+PG  VAV+G G VGL  A  AK  GA RVI ID  P
Sbjct: 177 A-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVP 219

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score =  107 bits (270), Expect = 1e-27
 Identities = 66/229 (28%), Positives = 99/229 (43%), Gaps = 30/229 (13%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL---FPCIL 67
           KAA  +E  KPL +EDV V  P  G+V +++    +CH+D +   G     L    P  L
Sbjct: 2   KAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTL 61

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE AG VE VG GV  ++ GD V+  +    C  C++C+ G+ N C             
Sbjct: 62  GHENAGWVEEVGSGVDGLKEGDPVV-VHPPWGCGTCRYCRRGEENYC------------E 108

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
           N R      +G           F++Y +V    + K+       +   L     T   AV
Sbjct: 109 NARFPGIGTDG----------GFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAV 158

Query: 187 WNTAKV-EPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKKFD 233
                  +PGS V V G+G +G +AV +  +A   + VI +D   +   
Sbjct: 159 KKALPYLDPGSTVVVIGVGGLGHIAV-QILRALTPATVIAVDRSEEALK 206

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain

 Score =  100 bits (251), Expect = 3e-27
 Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 28/133 (21%)

Query: 34  AGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIP 93
            GEV +++    +C +D + + G+ P    P ILGHE AGIVE VG GVT ++ GD V+ 
Sbjct: 1   PGEVLVRVKAAGICGSDLHIYRGEPPPVKLPLILGHEGAGIVEEVGPGVTGLKVGDRVVV 60

Query: 94  CYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTS---TFS 150
                C +C  C+ G+ NLC                         P   F+G      F+
Sbjct: 61  YPLIPCGKCAACREGRENLC-------------------------PNGKFLGVHLDGGFA 95

Query: 151 QYTVVHDVSVAKI 163
           +Y VV   ++  +
Sbjct: 96  EYVVVPARNLVPL 108

This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  106 bits (266), Expect = 5e-27
 Identities = 67/233 (28%), Positives = 95/233 (40%), Gaps = 28/233 (12%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           K   A + +  L     +  P    +V IKI +  +CH+D +T   +     +P + GHE
Sbjct: 1   KGYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHE 60

Query: 71  AAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
             GIV +VG  VT+ + GD V + C    C  C+ CKSG+   C K              
Sbjct: 61  IVGIVVAVGSKVTKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTY--------- 111

Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA-VWN 188
                 NGK     +    ++ + VV +  V KI           L C      G  V++
Sbjct: 112 ------NGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCA-----GITVYS 160

Query: 189 ---TAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237
                 V PG  V V G+G +G LAV + AKA GA  V      P K +  L 
Sbjct: 161 PLKRNGVGPGKRVGVVGIGGLGHLAV-KFAKALGA-EVTAFSRSPSKKEDALK 211

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  104 bits (262), Expect = 1e-26
 Identities = 65/221 (29%), Positives = 98/221 (44%), Gaps = 33/221 (14%)

Query: 11  KAAVAWEPNK----PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCI 66
           KA V  +P      PL + +V V  P  GEV IK+    +C TD +   G  P    P I
Sbjct: 2   KAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLI 61

Query: 67  LGHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
            GHE  G VE+VG GVT    GD V +P   + C EC++C+SG+ NLC   R  TG    
Sbjct: 62  PGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNAR-FTG---- 116

Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
                  ++++G           +++Y V  +     I      ++   L C    G  A
Sbjct: 117 -------YTVDGG----------YAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGYRA 159

Query: 186 VWNTAKVEPGSIVAVFGLGTVG-----LAVAEGAKAAGASR 221
           +   A ++PG  + ++G G        +A  +GA+    +R
Sbjct: 160 L-KLAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTR 199

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score =  104 bits (261), Expect = 2e-26
 Identities = 62/222 (27%), Positives = 93/222 (41%), Gaps = 33/222 (14%)

Query: 19  NKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL-FPCILGHEAAGIVES 77
            + L   D+    P   EV +++   AL H D +   G     L  P ILG + AG+VE+
Sbjct: 12  PEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEA 71

Query: 78  VGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSING 137
           VG GVT V+PG  V+      C  C++C +G+ NLC                 +++ I G
Sbjct: 72  VGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLC-----------------AQYGILG 114

Query: 138 KPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT----AKVE 193
               H  G   +++Y  V   ++  I      ++        P      W+     A++ 
Sbjct: 115 ---EHVDG--GYAEYVAVPARNLLPIPDNLSFEE----AAAAPLTFLTAWHMLVTRARLR 165

Query: 194 PGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           PG  V V G G+ VG A  + AK  GA  VI       K +R
Sbjct: 166 PGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLER 206

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score =  102 bits (257), Expect = 9e-26
 Identities = 67/242 (27%), Positives = 92/242 (38%), Gaps = 34/242 (14%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG------------KD 58
           KAA   EP KPL   ++    P   EV +K+    +CH+D + W G             D
Sbjct: 2   KAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDD 61

Query: 59  PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRG 118
                P +LGHE  G V +VG    +V+ GD V+      C EC  C +G  NLC K R 
Sbjct: 62  RGVKLPLVLGHEIVGEVVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGR- 120

Query: 119 ATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 178
           A G                  I+   G   +++Y +V                   L C 
Sbjct: 121 ALG------------------IFQDGG---YAEYVIVPHSRYLVDPGGLDPALAATLACS 159

Query: 179 VPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA 238
             T   AV     +     V + G G +GL      KA G + +I +DID  K +    A
Sbjct: 160 GLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAA 219

Query: 239 LA 240
            A
Sbjct: 220 GA 221

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score =  101 bits (254), Expect = 2e-25
 Identities = 60/217 (27%), Positives = 96/217 (44%), Gaps = 23/217 (10%)

Query: 13  AVAWEPNKPLVIEDVQV-APPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEA 71
           AV ++    + +E+V +       +  +K+   A+C +D + + G  P      +LGHE 
Sbjct: 3   AVVFKGPGDVRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIPSTP-GFVLGHEF 61

Query: 72  AGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKS 131
            G V  VG  V  ++ GD V+  +   C EC +C+ G++  C K      AG        
Sbjct: 62  VGEVVEVGPEVRTLKVGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAG-------- 113

Query: 132 RFSINGKPIYHFMGTSTFSQYTVV--HDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT 189
             +++G            ++Y  V   D ++ K+      +   LLG  +PTG       
Sbjct: 114 SPNLDGAQ----------AEYVRVPFADGTLLKLPDGLSDEAALLLGDILPTGYFGAKR- 162

Query: 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
           A+V PG  VAV G G VGL     A+  GA+RV  +D
Sbjct: 163 AQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVD 199

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score =  100 bits (250), Expect = 9e-25
 Identities = 78/235 (33%), Positives = 104/235 (44%), Gaps = 50/235 (21%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDA--YTW-----SGKDPEGLF 63
           KA V  +      + +V V  P  GEV IK+L  ++C TD   Y W     S   P    
Sbjct: 2   KAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKP---- 57

Query: 64  PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAE----CRECKFCKSGKTNLCGKVRGA 119
           P I GHE AG V  VGEGVT V+ GD+V     AE    C +C  C++G  ++C   +  
Sbjct: 58  PLIFGHEFAGEVVEVGEGVTRVKVGDYV----SAETHIVCGKCYQCRTGNYHVCQNTK-- 111

Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL---LG 176
              GV   D       +G           F++Y VV + ++ K D   P +   +   LG
Sbjct: 112 -ILGV---DT------DG----------CFAEYVVVPEENLWKNDKDIPPEIASIQEPLG 151

Query: 177 CGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
             V T L        V  G  V + G G +GL     AKAAGAS VI  D +P +
Sbjct: 152 NAVHTVL-----AGDV-SGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYR 200

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 98.9 bits (247), Expect = 1e-24
 Identities = 60/213 (28%), Positives = 90/213 (42%), Gaps = 31/213 (14%)

Query: 26  DVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV 85
           +V    P  GEV IK+    +C +D + + G       P +LGHE +G +  VG  V   
Sbjct: 18  EVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVEGW 77

Query: 86  QPGDHVIPCYQAE-CRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFM 144
           + GD V+       C  C +C+ G  NLC   R   G              +G       
Sbjct: 78  KVGDRVVSETTFSTCGRCPYCRRGDYNLCPH-RKGIGTQA-----------DG------- 118

Query: 145 GTSTFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTGLGAVWNTAKVEPGSIVAVF 201
               F++Y +V + S+ ++     L+   L   L   V     AV   + + PG  V VF
Sbjct: 119 ---GFAEYVLVPEESLHELPENLSLEAAALTEPLAVAV----HAVAERSGIRPGDTVVVF 171

Query: 202 GLGTVGLAVAEGAKAAGASRVI-GIDIDPKKFD 233
           G G +GL  A+ AK  GA+ V+ G + D  + D
Sbjct: 172 GPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLD 204

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score = 99.2 bits (248), Expect = 1e-24
 Identities = 70/225 (31%), Positives = 100/225 (44%), Gaps = 33/225 (14%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQ---AGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           KA V   P K   I       P      +  +K+L T +C TD +   G  P      IL
Sbjct: 2   KALVYHGPGK---ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVTPGRIL 58

Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE  G+VE VG  VT  + GD V I C  + C  C +C+ G  + C      +G  ++ 
Sbjct: 59  GHEGVGVVEEVGSAVTNFKVGDRVLISCISS-CGTCGYCRKGLYSHC-----ESGGWILG 112

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYT-VVH-DVSVAKIDPQAPLDKVCLLGCGVPTGL- 183
           N       I+G          T ++Y  + H D S+ K+      +   +L   +PTG  
Sbjct: 113 NL------IDG----------TQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPTGYE 156

Query: 184 GAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228
             V N  KV+PG  VA+ G G VGLA    A+    S++I +D+D
Sbjct: 157 CGVLN-GKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLD 200

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score = 92.7 bits (231), Expect = 4e-22
 Identities = 61/233 (26%), Positives = 96/233 (41%), Gaps = 39/233 (16%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYT-WSGK--DPEGLFPCIL 67
           KA       K   IE   +      +  ++    A C +D +T W G   +  G+   IL
Sbjct: 2   KAFAMLGIGKVGWIE-KPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGM---IL 57

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVI-----PCYQAECRECKFCKSGKTNLCGKVRGATGA 122
           GHEA G+VE VG  V + +PGD VI     P ++         + G  +  G        
Sbjct: 58  GHEAVGVVEEVGSEVKDFKPGDRVIVPAITPDWR-----SVAAQRGYPSQSG-------- 104

Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQAPLDKVCLLGCGVP 180
             M+   K     +G           F++Y  V+D   ++A +      ++  +L   + 
Sbjct: 105 -GMLGGWKFSNFKDG----------VFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMS 153

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           TG       A ++ G  VAVFG+G VGL    GA+  GA R+I +   P + +
Sbjct: 154 TGFHGAEL-ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVE 205

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 90.4 bits (225), Expect = 3e-21
 Identities = 74/238 (31%), Positives = 106/238 (44%), Gaps = 38/238 (15%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KA    EP  PL + +  V  P  GEV IK+    +CH+DA+   G  P   +P + GHE
Sbjct: 2   KAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHE 61

Query: 71  AAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLC--GKVRGATGAGVMMN 127
             G +++VGEGV+  + GD V +  +   C  C  C+ G    C  GKV G T  G    
Sbjct: 62  VVGRIDAVGEGVSRWKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRDG---- 117

Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI-DPQAPLDKVCLLGCGVPTGLGAV 186
                                +++Y +    ++A+I D     +   LL  GV T   A+
Sbjct: 118 --------------------GYAEYMLAPAEALARIPDDLDAAEAAPLLCAGV-TTFNAL 156

Query: 187 WNTAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMSL 243
            N+   +PG +VAV G+G +G LAV + A   G  R + I     K D     LA  L
Sbjct: 157 RNS-GAKPGDLVAVQGIGGLGHLAV-QYAAKMGF-RTVAISRGSDKAD-----LARKL 206

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 89.2 bits (222), Expect = 1e-20
 Identities = 67/205 (32%), Positives = 91/205 (44%), Gaps = 29/205 (14%)

Query: 39  IKILFTALCHTDAYTWSGK--DPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQ 96
           ++I  TA+C +D + + G+     GL   +LGHEA G VE VG  V  ++ GD V+  + 
Sbjct: 30  VRITTTAICGSDLHMYRGRTGAEPGL---VLGHEAMGEVEEVGSAVESLKVGDRVVVPFN 86

Query: 97  AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQ--YTV 154
             C  C+ CK G T +C  V      G                 Y  MG     Q  Y  
Sbjct: 87  VACGRCRNCKRGLTGVCLTVNPGRAGGAYG--------------YVDMGPYGGGQAEYLR 132

Query: 155 V--HDVSVAKIDPQAP----LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGL 208
           V   D ++ K+  +       D + L     PTG   +   A V+PG  VAVFG G VGL
Sbjct: 133 VPYADFNLLKLPDRDGAKEKDDYLMLSDI-FPTGWHGL-ELAGVQPGDTVAVFGAGPVGL 190

Query: 209 AVAEGAKAAGASRVIGIDIDPKKFD 233
             A  A   GASRV  +D  P++ D
Sbjct: 191 MAAYSAILRGASRVYVVDHVPERLD 215

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 88.2 bits (219), Expect = 2e-20
 Identities = 68/228 (29%), Positives = 107/228 (46%), Gaps = 37/228 (16%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCILG 68
           KAAV  + +   V+ +  + P + GE  +K+ +  +CHTD +  +G   D  G    ILG
Sbjct: 2   KAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGDKTG---RILG 58

Query: 69  HEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           HE  GIV+ VG GVT ++ GD V I  +   C  C++C +G+  LC  V+ A        
Sbjct: 59  HEGIGIVKEVGPGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAG------- 111

Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA---KIDPQAPLDKVCLLGCGVPTGLG 184
                ++++G      M      Q  V  D +V     +DP       C    GV T   
Sbjct: 112 -----YTVDGG-----MAE----QCIVTADYAVKVPEGLDPAQASSITC---AGV-TTYK 153

Query: 185 AVWNTAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKK 231
           A+   + ++PG  +A++G G +G LA+        A +VI +DI+  K
Sbjct: 154 AI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDK 199

Length = 338

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score = 84.1 bits (209), Expect = 5e-19
 Identities = 70/255 (27%), Positives = 103/255 (40%), Gaps = 58/255 (22%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-------PEGLF 63
           KA V  +    L + DV V  P   +V IK+  TA+C TD + ++  +            
Sbjct: 2   KALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPV---- 57

Query: 64  PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAE----CRECKFCKSGKTNLCGKVRGA 119
           P ++GHE  G V  VG  VT  + GD V      E    C  C+ C++G+ +LC   R  
Sbjct: 58  PMVVGHEFVGEVVEVGSEVTGFKVGDRV----SGEGHIVCGHCRNCRAGRRHLC---RNT 110

Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL---LG 176
            G GV   +R       G           F++Y V+   +V KI    P D   +    G
Sbjct: 111 KGVGV---NR------PG----------AFAEYLVIPAFNVWKIPDDIPDDLAAIFDPFG 151

Query: 177 CGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP------K 230
             V T L   ++      G  V + G G +G+  A  AK  GA  V+  D++       +
Sbjct: 152 NAVHTALS--FDLV----GEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELAR 205

Query: 231 KF--DRVLNALAMSL 243
           K    R +N     L
Sbjct: 206 KMGATRAVNVAKEDL 220

Length = 341

>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional

 Score = 84.1 bits (208), Expect = 5e-19
 Identities = 59/223 (26%), Positives = 93/223 (41%), Gaps = 49/223 (21%)

Query: 36  EVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV---- 91
           +V +K+  + LC +D            +P  LGHE +G VE+VG GV ++ PGD V    
Sbjct: 27  DVLVKVASSGLCGSDIPRIFKNGAH-YYPITLGHEFSGYVEAVGSGVDDLHPGDAVACVP 85

Query: 92  -IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTF- 149
            +PC+      C  C  G  +LC K                         Y F+G+    
Sbjct: 86  LLPCFT-----CPECLRGFYSLCAK-------------------------YDFIGSRRDG 115

Query: 150 --SQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVG 207
             ++Y VV   ++  +    P++    +   +  GL A ++ A+   G  V + G GT+G
Sbjct: 116 GNAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGLHA-FHLAQGCEGKNVIIIGAGTIG 173

Query: 208 LAVAEGAKAAGASRVIGIDIDPKKF--------DRVLNALAMS 242
           L   + A A GA  V  IDI+ +K          +  N+  MS
Sbjct: 174 LLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMS 216

Length = 347

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score = 83.2 bits (206), Expect = 9e-19
 Identities = 56/234 (23%), Positives = 83/234 (35%), Gaps = 51/234 (21%)

Query: 11  KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-PEGLFPCIL 67
           KA V  E   P  L + +V    P  GEV +++    +   D     G   P    P I 
Sbjct: 2   KAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIP 61

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           G EAAG+V +VG GVT  + GD V                          G  G      
Sbjct: 62  GSEAAGVVVAVGSGVTGFKVGDRVAALGG--------------------VGRDGG----- 96

Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
                                +++Y VV    +  +      ++   L     T   A++
Sbjct: 97  ---------------------YAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALF 135

Query: 188 NTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA 240
           + A ++PG  V V G  G VG A  + AKA GA  V+ +    +K + +    A
Sbjct: 136 DRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGA 188

Length = 326

>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family

 Score = 82.6 bits (204), Expect = 2e-18
 Identities = 65/225 (28%), Positives = 100/225 (44%), Gaps = 38/225 (16%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL--------FPCILGHEAAG 73
           L +EDV V   +  E+ I++    +C +D + +   D +G         FP ++GHE +G
Sbjct: 39  LRVEDVPVPNLKPDEILIRVKACGICGSDIHLYE-TDKDGYILYPGLTEFPVVIGHEFSG 97

Query: 74  IVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRF 133
           +VE  G+ V   + GD V       C  C+ C+SG  N C             N ++  F
Sbjct: 98  VVEKTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHC------------KNLKELGF 145

Query: 134 SINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL---DKVCLLGCGV-PTGL---GAV 186
           S +G           F++Y  V+     +I+    +   DK    G  V PT +   G  
Sbjct: 146 SADG----------AFAEYIAVNARYAWEINELREIYSEDKAFEAGALVEPTSVAYNGLF 195

Query: 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
                  PG+ V V+G G +GLA    AKAAGAS+VI  +I  ++
Sbjct: 196 IRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEER 240

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 81.1 bits (201), Expect = 5e-18
 Identities = 60/223 (26%), Positives = 90/223 (40%), Gaps = 50/223 (22%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF-------PCILGHEAAGI 74
           L +E+     P  GEVR+++    +C +D + +      G F       P +LGHE +G+
Sbjct: 9   LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQ----HGGFGTVRLREPMVLGHEVSGV 64

Query: 75  VESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFS 134
           VE+VG GVT + PG  V       C  C +C++G+ NLC  +R                 
Sbjct: 65  VEAVGPGVTGLAPGQRVAVNPSRPCGTCDYCRAGRPNLCLNMR----------------- 107

Query: 135 INGKPIYHFMGTST--------FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP--TGLG 184
                   F+G++         F +Y VV       +     L          P    L 
Sbjct: 108 --------FLGSAMRFPHVQGGFREYLVVDASQCVPLPDGLSLR---RAALAEPLAVALH 156

Query: 185 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227
           AV N A    G  V V G G +G  V   A+ AGA+ ++  D+
Sbjct: 157 AV-NRAGDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDL 198

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like

 Score = 79.7 bits (197), Expect = 2e-17
 Identities = 64/221 (28%), Positives = 91/221 (41%), Gaps = 33/221 (14%)

Query: 11  KAAVAWEPNKPLV--IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILG 68
           +A V   P    V  + D  +  P   +  I+++ T +C +D + + G  P    P  +G
Sbjct: 2   RATVIHGPGDIRVEEVPDPVIEEP--TDAVIRVVATCVCGSDLWPYRGVSPTR-APAPIG 58

Query: 69  HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
           HE  G+VE VG  VT V+PGD VI  +      C FC++G T  C               
Sbjct: 59  HEFVGVVEEVGSEVTSVKPGDFVIAPFAISDGTCPFCRAGFTTSC--------------- 103

Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVH-DVSVAKIDPQAPLDKVCL-----LGCGVPTG 182
                 ++G     F+         V   D ++ K+      D+  L     L   + TG
Sbjct: 104 ------VHGGFWGAFVDGGQGEYVRVPLADGTLVKVPGSPSDDEDLLPSLLALSDVMGTG 157

Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVI 223
             A   +A V PGS V V G G VGL     AK  GA R+I
Sbjct: 158 HHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERII 197

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score = 79.1 bits (195), Expect = 3e-17
 Identities = 63/212 (29%), Positives = 90/212 (42%), Gaps = 34/212 (16%)

Query: 23  VIEDVQVAPPQAGEVRIKILFTALCHTDA--YTWSGKDPEGL-FPCILGHEAAGIVESVG 79
            + +V V  P  GEV IK+L T++C TD   Y W       +  P ++GHE AG V  +G
Sbjct: 12  ELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIG 71

Query: 80  EGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKP 139
            GV  ++ GD+V       C +C  C+ G+ ++C   +     GV   D           
Sbjct: 72  PGVEGIKVGDYVSVETHIVCGKCYACRRGQYHVC---QNTKIFGV---DT---------- 115

Query: 140 IYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTGLGAVWNTAKVEPGS 196
                    F++Y VV   ++ K     P +   +   LG  V T L      A    G 
Sbjct: 116 ------DGCFAEYAVVPAQNIWKNPKSIPPEYATIQEPLGNAVHTVL------AGPISGK 163

Query: 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228
            V V G G +GL     AKA+GA  VI  D +
Sbjct: 164 SVLVTGAGPIGLMAIAVAKASGAYPVIVSDPN 195

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

 Score = 79.2 bits (195), Expect = 3e-17
 Identities = 70/220 (31%), Positives = 103/220 (46%), Gaps = 20/220 (9%)

Query: 17  EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTD-AYTWSGKDPEGLFPCILGHEAAGIV 75
           EP KP+V   V++    AG+V +K+    +CHTD +Y + G       P  LGHE +G V
Sbjct: 6   EPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRV 65

Query: 76  ESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSI 135
              G G      G  VI      C EC+ CK+G+  +C   R     G   ND +  F+ 
Sbjct: 66  IQAGAG-AASWIGKAVIVPAVIPCGECELCKTGRGTIC---RAQKMPG---NDMQGGFA- 117

Query: 136 NGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPG 195
                 H +  +      VV +  +A      PL+ V ++   V T   A    A ++ G
Sbjct: 118 -----SHIVVPAKG--LCVVDEARLAAAG--LPLEHVSVVADAVTTPYQAAVQ-AGLKKG 167

Query: 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV 235
            +V V G G VG  + + AKA GA+ V+ IDIDP+K + +
Sbjct: 168 DLVIVIGAGGVGGYMVQTAKAMGAA-VVAIDIDPEKLEMM 206

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349

>gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional

 Score = 77.9 bits (192), Expect = 9e-17
 Identities = 66/246 (26%), Positives = 103/246 (41%), Gaps = 42/246 (17%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           K+ V  +PN  L IE+  +  P AGEVR+K+    +C +D++ + G +P   +P ++GHE
Sbjct: 2   KSIVIEKPNS-LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHE 60

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
             G++++VGEGV   + G+ V       C  C  C  GK N+C                 
Sbjct: 61  FFGVIDAVGEGVDAARIGERVAVDPVISCGHCYPCSIGKPNVC----------------- 103

Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV---PTGLGA-V 186
           +   + G    H  G   FS+Y VV   +  +I P A  D+       V   P  + A V
Sbjct: 104 TSLVVLG---VHRDG--GFSEYAVVPAKNAHRI-PDAIADQ-----YAVMVEPFTIAANV 152

Query: 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKF--------DRVLN 237
                     +  ++G G VGL + +  K       VI  D   ++         D V+N
Sbjct: 153 TGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVIN 212

Query: 238 ALAMSL 243
                L
Sbjct: 213 NAQEPL 218

Length = 339

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 76.9 bits (190), Expect = 2e-16
 Identities = 62/237 (26%), Positives = 78/237 (32%), Gaps = 56/237 (23%)

Query: 11  KAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH 69
           KAAV   P    LV+ DV V  P   EV +K+   AL   D            +P ILG 
Sbjct: 2   KAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGFI-PSYPAILGC 60

Query: 70  EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
           + AG V  VG GVT  + GD V                             G     N  
Sbjct: 61  DFAGTVVEVGSGVTRFKVGDRVA----------------------------GFVHGGNPN 92

Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT-------- 181
             R                F +Y V      AKI      ++   L  G+ T        
Sbjct: 93  DPR-------------NGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQK 139

Query: 182 -GLGAVW-NTAKVEPGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPKKFDRV 235
            GL       +    G  V ++G  + VG    + AK AG  +VI     PK FD V
Sbjct: 140 LGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITT-ASPKNFDLV 194

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 73.5 bits (181), Expect = 3e-15
 Identities = 61/218 (27%), Positives = 91/218 (41%), Gaps = 28/218 (12%)

Query: 11  KAAVAWEPN--KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILG 68
             A+ +E +  + L +EDV+   P  GEV I++    +   D    +    + + P I G
Sbjct: 1   MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVKVKPM-PHIPG 59

Query: 69  HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
            E AG+VE VG+ V  V+ GD V+   +     C  C SG   LC   R     GV+ N 
Sbjct: 60  AEFAGVVEEVGDHVKGVKKGDRVVVYNRVFDGTCDMCLSGNEMLC---RNGGIIGVVSN- 115

Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
                               +++Y VV + ++ KI      +    L     T   A+  
Sbjct: 116 ------------------GGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHAL-K 156

Query: 189 TAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI 225
           TA + PG  V VFG  G  G+   + AK  GA  VI +
Sbjct: 157 TAGLGPGETVVVFGASGNTGIFAVQLAKMMGA-EVIAV 193

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score = 72.9 bits (180), Expect = 4e-15
 Identities = 63/218 (28%), Positives = 84/218 (38%), Gaps = 54/218 (24%)

Query: 11  KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL-FPCIL 67
           KA V  E   P  LV+E+V   P   GEVRI++    +   D     GK       P + 
Sbjct: 2   KAVVCKELGGPEDLVLEEVPPEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVP 61

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           G E AG+VE+VGEGVT  + GD V+                           TG G    
Sbjct: 62  GSEVAGVVEAVGEGVTGFKVGDRVV-------------------------ALTGQG---- 92

Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
                                F++  VV   +V  +      ++   L     T   A+ 
Sbjct: 93  --------------------GFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALV 132

Query: 188 NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIG 224
             A+++PG  V V G  G VGLA  + AKA GA RVI 
Sbjct: 133 RRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIA 169

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase

 Score = 72.2 bits (177), Expect = 9e-15
 Identities = 60/208 (28%), Positives = 87/208 (41%), Gaps = 23/208 (11%)

Query: 36  EVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV-IPC 94
           +V +KIL+  +CH+D +T   +     +P + GHE  GIV  +G+ V + + GD V +  
Sbjct: 39  DVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTKLGKNVKKFKEGDRVGVGV 98

Query: 95  YQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYT- 153
               C+ C+ C     N C K         M+      F+ N   I H  GT  +  Y+ 
Sbjct: 99  IVGSCKSCESCDQDLENYCPK---------MI------FTYNS--IGH-DGTKNYGGYSD 140

Query: 154 --VVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVA 211
             VV    V +     PLD    L C   T    +      EPG  + V GLG +G    
Sbjct: 141 MIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAV 200

Query: 212 EGAKAAGASRVIGIDIDPKKFDRVLNAL 239
           +  KA G  +V  I     K D  +N L
Sbjct: 201 KIGKAFGL-KVTVISSSSNKEDEAINRL 227

Length = 360

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 70.3 bits (173), Expect = 3e-14
 Identities = 52/225 (23%), Positives = 74/225 (32%), Gaps = 61/225 (27%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQA--GEVRIKILFTALCHTDAYTWSG---KDPEGLFPC 65
           KA    E   P V+E   V  P+   GEV +K+    +   D     G          P 
Sbjct: 2   KAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPL 61

Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
           I GH+ AG+V +VG GVT  + GD V                                  
Sbjct: 62  IPGHDVAGVVVAVGPGVTGFKVGDEVF--------------------------------- 88

Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP----T 181
                      G   +   G   +++Y VV    +A        +        +P    T
Sbjct: 89  -----------GMTPFTRGG--AYAEYVVVPADELALKPANLSFE----EAAALPLAGLT 131

Query: 182 GLGAVWNTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGI 225
              A++    ++ G  V + G  G VG    + AKA GA RVI  
Sbjct: 132 AWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGA-RVIAT 175

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 69.6 bits (171), Expect = 6e-14
 Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGE 80
          L IE++ V  P AGEV I++    L   DA    G   E    P  LG+EAAG+VE+VG 
Sbjct: 15 LRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGA 74

Query: 81 GVTEVQPGDHV 91
          GVT    GD V
Sbjct: 75 GVTGFAVGDRV 85

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score = 69.3 bits (170), Expect = 8e-14
 Identities = 45/218 (20%), Positives = 71/218 (32%), Gaps = 62/218 (28%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDPE--GLFPCILGHEAAGIVESV 78
             +E+     P  G+V +++    +C +D   ++ G+        P   GHE  G V ++
Sbjct: 7   FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVAL 66

Query: 79  GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGK 138
           G GV  +  GD V                                               
Sbjct: 67  GPGVRGLAVGDRVA---------------------------------------------- 80

Query: 139 PIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTGLGAVWNTAKVEPG 195
                +    F++Y +        + P     +      LGC +      V+    +  G
Sbjct: 81  ----GLSGGAFAEYDLADADHAVPL-PSLLDGQAFPGEPLGCAL-----NVFRRGWIRAG 130

Query: 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
             VAV G G +GL   + A AAGA RVI ID  P +  
Sbjct: 131 KTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLA 168

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 68.2 bits (168), Expect = 2e-13
 Identities = 31/70 (44%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81
          L  EDV V  P  GEV ++     +   D Y  SG  P  L P +LG E AG+VE+VG G
Sbjct: 14 LEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPLPL-PFVLGVEGAGVVEAVGPG 72

Query: 82 VTEVQPGDHV 91
          VT  + GD V
Sbjct: 73 VTGFKVGDRV 82

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|234025 TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenase, glutathione-independent

 Score = 68.0 bits (166), Expect = 3e-13
 Identities = 69/213 (32%), Positives = 96/213 (45%), Gaps = 27/213 (12%)

Query: 37  VRIKILFTALCHTDAYTWSGKD--PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPC 94
           V +K++ T +C +D +   G+   P GL   +LGHE  G V   G  V  ++ GD V   
Sbjct: 36  VILKVVTTNICGSDQHMVRGRTTAPTGL---VLGHEITGEVIEKGRDVEFIKIGDIVSVP 92

Query: 95  YQAECRECKFCKSGKTNLCGKVR----GATGAGVMMNDRKSRFSINGKPIYHFMGTSTFS 150
           +   C  C+ CK G T +C  V     GA    V M        + G+  Y  +  + F+
Sbjct: 93  FNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGW-----VGGQSEYVMVPYADFN 147

Query: 151 QYTVV-HDVSVAKIDPQAPLDKVCLLGCGVPTGL-GAVWNTAKVEPGSIVAVFGLGTVGL 208
                  D ++ KI      D   L     PTG  GAV  TA V PGS V + G G VGL
Sbjct: 148 LLKFPDRDQALEKI-----RDLTMLSDI-FPTGYHGAV--TAGVGPGSTVYIAGAGPVGL 199

Query: 209 AVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241
           A A  A+  GA+ VI  D++P    R+  A + 
Sbjct: 200 AAAASAQLLGAAVVIVGDLNP---ARLAQARSF 229

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent [Central intermediary metabolism, One-carbon metabolism]. Length = 393

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 65.7 bits (161), Expect = 1e-12
 Identities = 53/224 (23%), Positives = 84/224 (37%), Gaps = 53/224 (23%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DPEGLFPCILGHEAAGIVESVGE 80
           L + D+ V  P  GEV +++  + +   D Y  +G        P + G + AG+VE+VGE
Sbjct: 15  LRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGE 74

Query: 81  GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPI 140
           GV  ++ GD V            +  +             G                   
Sbjct: 75  GVDGLKVGDRV------------WLTNLGWG------RRQG------------------- 97

Query: 141 YHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK-VCLLGCGVP--TGLGAVWNTAKVEPGSI 197
                  T ++Y VV    +  +      ++   L   G+P  T   A+++ A  + G  
Sbjct: 98  -------TAAEYVVVPADQLVPLPDGVSFEQGAAL---GIPALTAYRALFHRAGAKAGET 147

Query: 198 VAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA 240
           V V G  G VG A  + A+ AGA RVI      +  + V  A A
Sbjct: 148 VLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVRQAGA 190

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score = 64.2 bits (157), Expect = 4e-12
 Identities = 57/228 (25%), Positives = 90/228 (39%), Gaps = 51/228 (22%)

Query: 11  KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILG 68
           KA V  +P  P  L + ++ +  P+ G V I++    L  ++ +T  G  P   FP +LG
Sbjct: 2   KAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLG 61

Query: 69  HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
            EA G VE    G     PG  V                           AT  G M   
Sbjct: 62  IEAVGEVEEAPGG--TFTPGQRV---------------------------ATAMGGMG-- 90

Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
                + +G          ++++YT+V +  V  ID      ++  L     T  G+++ 
Sbjct: 91  ----RTFDG----------SYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFR 136

Query: 189 TAKVEPGSIVAVFGLGT--VGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           +  ++PG  + + G GT  VGLA  + AKA GA  V      P++   
Sbjct: 137 SLGLQPGDTLLIRG-GTSSVGLAALKLAKALGA-TVTATTRSPERAAL 182

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase

 Score = 64.4 bits (157), Expect = 4e-12
 Identities = 57/223 (25%), Positives = 85/223 (38%), Gaps = 42/223 (18%)

Query: 20  KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAY---TWSGKDPEGLFPCILGHEAAGIVE 76
             L I+  ++ P    +VR+++    +C +D +   T    D     P ++GHE AGI+E
Sbjct: 27  NTLKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIE 86

Query: 77  SVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSIN 136
            VG  V  +  GD V       C  C  CK G+ NLC                       
Sbjct: 87  EVGSEVKHLVVGDRVALEPGISCWRCNLCKEGRYNLC----------------------- 123

Query: 137 GKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL--------LGCGVPTGLGAVWN 188
             P   F  T           V  A +  + P + V L        L  GV         
Sbjct: 124 --PEMKFFATPPVHGSLANQVVHPADLCFKLP-ENVSLEEGAMCEPLSVGVHA-----CR 175

Query: 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
            A + P + V V G G +GL     A+A GA R++ +D+D ++
Sbjct: 176 RANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDER 218

Length = 364

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 63.3 bits (155), Expect = 8e-12
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 3/89 (3%)

Query: 11 KAAVAWEPNKPLVIEDVQVAPPQ--AGEVRIKILFTALCHTDAYTWSGKDPEGL-FPCIL 67
          KA V      P V E  +V  PQ   G+V +++  + +   D     G        P IL
Sbjct: 2  KALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAIL 61

Query: 68 GHEAAGIVESVGEGVTEVQPGDHVIPCYQ 96
          G + AG+VE+VGEGVT  + GD V  C  
Sbjct: 62 GCDVAGVVEAVGEGVTRFRVGDEVYGCAG 90

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase

 Score = 62.6 bits (153), Expect = 2e-11
 Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 15/126 (11%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTD------AYTWSGKDPEGLFP 64
           KA         + + D+    P  GEV ++ L   +C TD       Y  +   P G   
Sbjct: 2   KAIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTA---PPGEDF 58

Query: 65  CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC----GKVRGAT 120
            +LGHEA G+VE VG+G + + PGD V+P  +    +C  C+ G+ + C       RG  
Sbjct: 59  LVLGHEALGVVEEVGDG-SGLSPGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIK 117

Query: 121 GA-GVM 125
           G  G M
Sbjct: 118 GLHGFM 123

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 355

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 60/243 (24%), Positives = 94/243 (38%), Gaps = 51/243 (20%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG---------KDPEG 61
           +A V   P +   +E+V V  P  GE+ +K+    +C  D   + G         + P  
Sbjct: 2   RAVVCHGP-QDYRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYV 60

Query: 62  LFPCILGHEAAGIVESVGEGVTE--VQPGDHVIPCYQAECRECKFCKSG------KTNLC 113
             P I GHE  G V  +GEG  E  V+ GD VI      C  C+FC  G      K +L 
Sbjct: 61  KPPMIPGHEFVGRVVELGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLY 120

Query: 114 GKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVC 173
           G      G                  +  +M    F +  +VH     K+    P +   
Sbjct: 121 GFQNNVNGG-----------------MAEYM---RFPKEAIVH-----KVPDDIPPEDAI 155

Query: 174 L---LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230
           L   L C     L AV + A ++   +V + G G +GL +   A+     ++I +D+  +
Sbjct: 156 LIEPLACA----LHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDE 210

Query: 231 KFD 233
           +  
Sbjct: 211 RLA 213

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 55/185 (29%), Positives = 75/185 (40%), Gaps = 18/185 (9%)

Query: 36  EVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV-IPC 94
           +V IK+++  +CHTD +          +P + GHE  G V  VG  V++   GD V +  
Sbjct: 36  DVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGV 95

Query: 95  YQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTV 154
               C EC  CKS     C K   +       ND       +GKP         F+   V
Sbjct: 96  IVGCCGECSPCKSDLEQYCNKRIWS------YND----VYTDGKPT-----QGGFASAMV 140

Query: 155 VHDVSVAKI-DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEG 213
           V    V KI +  AP     LL  GV T    + +    + G    + GLG VG    + 
Sbjct: 141 VDQKFVVKIPEGMAPEQAAPLLCAGV-TVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKI 199

Query: 214 AKAAG 218
           AKA G
Sbjct: 200 AKAMG 204

Length = 357

>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family

 Score = 61.6 bits (150), Expect = 4e-11
 Identities = 54/235 (22%), Positives = 87/235 (37%), Gaps = 49/235 (20%)

Query: 19  NKPLVIEDVQVAPPQAGEVRIKILFTALCHTD----------AYTWSGKDPEGLF-PCIL 67
           + PLV+ DV    P  G+V +K+L   +C +D               G     L    +L
Sbjct: 8   DGPLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVL 67

Query: 68  GHEAAGIVESVGEGV-TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE  G V   G G   +++ G  V       C +   C  G +        A G     
Sbjct: 68  GHEFCGEVVDYGPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSP------EAPGG---- 117

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
                                 +++Y ++ +  + ++     ++   L    +  GL AV
Sbjct: 118 ----------------------YAEYMLLSEALLLRVPDGLSMEDAALTE-PLAVGLHAV 154

Query: 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241
              A++ PG +  V G G +GLAV    KA G   ++  D  P++      ALAM
Sbjct: 155 -RRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRAL---ALAM 205

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 60.6 bits (148), Expect = 8e-11
 Identities = 51/206 (24%), Positives = 80/206 (38%), Gaps = 36/206 (17%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAY----TWSGKDPEGLFPCILGHEAAGIVES 77
           L + +  V  P  GEV +++   +L + D       +     + L P     + AG V +
Sbjct: 15  LKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPL---SDGAGEVVA 71

Query: 78  VGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSING 137
           VGEGVT  + GD V+P +                L G       A  +         I+G
Sbjct: 72  VGEGVTRFKVGDRVVPTFFP------------NWLDGPPTAEDEASAL------GGPIDG 113

Query: 138 KPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSI 197
                       ++Y V+ +  + +       ++   L C   T   A++    ++PG  
Sbjct: 114 ----------VLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLKPGDT 163

Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVI 223
           V V G G V L   + AKAAGA RVI
Sbjct: 164 VLVQGTGGVSLFALQFAKAAGA-RVI 188

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 7/79 (8%)

Query: 20 KPLVIEDVQVA--PPQAGEVRIKILFTALCHTDAYTWSGK---DPEGLFPCILGHEAAGI 74
           PLV+E V +   PP  GEV +++L   +  +D  T SG     P    P + G+E  G+
Sbjct: 10 LPLVLELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPP--LPAVPGNEGVGV 67

Query: 75 VESVGEGVTEVQPGDHVIP 93
          V  VG GV+ +  G  V+P
Sbjct: 68 VVEVGSGVSGLLVGQRVLP 86

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|176252 cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 17 EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIV 75
          +P   L I +V    P AGEV ++   + + + D +T  G        P I G EA G+V
Sbjct: 11 DPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVV 70

Query: 76 ESVGEGVTEVQPGDHV 91
          ++VGEGV  +Q G  V
Sbjct: 71 DAVGEGVKGLQVGQRV 86

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 150 SQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLA 209
           ++  VV    +  +    P ++  L      T L  V + A+   G  VAV GLG VGL 
Sbjct: 55  AERVVVPANLLVPLPDGLPPERAALTALA-ATALNGVRD-AEPRLGERVAVVGLGLVGLL 112

Query: 210 VAEGAKAAGASRVIGIDIDPKK 231
            A+ AKAAGA  V+G+D D  +
Sbjct: 113 AAQLAKAAGAREVVGVDPDAAR 134

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase

 Score = 56.2 bits (135), Expect = 3e-09
 Identities = 52/185 (28%), Positives = 72/185 (38%), Gaps = 17/185 (9%)

Query: 36  EVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV-IPC 94
           +V +KILF  +CH+D +T         +P I GHE  GI   VG+ VT+ + GD V +  
Sbjct: 33  DVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGV 92

Query: 95  YQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTV 154
               C+ C+ C     N C KV                F+ N +          +S   V
Sbjct: 93  IIGSCQSCESCNQDLENYCPKV---------------VFTYNSRSSDGTRNQGGYSDVIV 137

Query: 155 VHDVSVAKIDPQAPLDKVCLLGC-GVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEG 213
           V    V  I    P D    L C G+       +     E G  + V GLG +G    + 
Sbjct: 138 VDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKI 197

Query: 214 AKAAG 218
            KA G
Sbjct: 198 GKAFG 202

Length = 375

>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 51/230 (22%), Positives = 81/230 (35%), Gaps = 64/230 (27%)

Query: 13  AVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAA 72
           A+  +    L +ED+    P  GE  +++L   +C+TD   + G  P   FP + GHE  
Sbjct: 3   ALVLDGGLDLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP---FPGVPGHEFV 59

Query: 73  GIVESVGEG-------VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
           GIVE   E        V E+             C  C++C+ G    C            
Sbjct: 60  GIVEEGPEAELVGKRVVGEI----------NIACGRCEYCRRGLYTHC------------ 97

Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG--- 182
               ++   I  +          F++Y               PL+ + ++   VP     
Sbjct: 98  --PNRTVLGIVDRD-------GAFAEYLT------------LPLENLHVVPDLVPDEQAV 136

Query: 183 ----LGAVWNT---AKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS-RVIG 224
               L A         + PG  VAV G G +GL +A+     G    ++G
Sbjct: 137 FAEPLAAALEILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVG 186

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 54.9 bits (133), Expect = 7e-09
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 25 EDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL---FPCILGHEAAGIVESVGEG 81
           +V +  P+ GEV +K+   ++   D     G     L   FP I G + AG V +VG G
Sbjct: 17 VEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSG 76

Query: 82 VTEVQPGDHV 91
          VT  + GD V
Sbjct: 77 VTRFKVGDEV 86

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism associated alcohol dehydrogenase

 Score = 54.4 bits (131), Expect = 8e-09
 Identities = 41/185 (22%), Positives = 68/185 (36%), Gaps = 23/185 (12%)

Query: 66  ILGHEAAGIVESVGEGVTE------VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGA 119
           +LGHE  G V ++  G T       ++ G  V+      C  C  C+ G    C  +R  
Sbjct: 1   VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKY 60

Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTV-VHDVSVAKIDPQAPLDKVCLLGCG 178
                                     +  ++++       ++  +    P       GC 
Sbjct: 61  GHE---------ALDSGWPL------SGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCA 105

Query: 179 VPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA 238
             T + A+     ++ G  V V G G +GL  A  A AAGA+RV+  D  P + +  L+ 
Sbjct: 106 TATVMAALEAAGDLK-GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF 164

Query: 239 LAMSL 243
            A +L
Sbjct: 165 GATAL 169

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Length = 280

>gnl|CDD|182701 PRK10754, PRK10754, quinone oxidoreductase, NADPH-dependent; Provisional

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 21 PLVIEDVQVAP--PQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESV 78
          P V++ V+  P  P   EV+++     + + D Y  SG  P    P  LG EAAG+V  V
Sbjct: 13 PEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVSKV 72

Query: 79 GEGVTEVQPGDHVI 92
          G GV  ++ GD V+
Sbjct: 73 GSGVKHIKVGDRVV 86

Length = 327

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 52.2 bits (126), Expect = 5e-08
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG--KDPEGLFPCILGHEAAGIVESVG 79
          L +E   +  P +GEVR+++    L   D     G         P + G E AG VE+VG
Sbjct: 14 LKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKP-PFVPGFECAGTVEAVG 72

Query: 80 EGVTEVQPGDHVI 92
          EGV + + GD V+
Sbjct: 73 EGVKDFKVGDRVM 85

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score = 51.4 bits (124), Expect = 8e-08
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 35 GEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 92
           EV +++    L   D     G  P       LG E +GIV  VG GVT ++ GD V+
Sbjct: 1  DEVEVEVKAAGLNFRDVLVALGLLPGD--ETPLGLECSGIVTRVGSGVTGLKVGDRVM 56

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 40/179 (22%), Positives = 64/179 (35%), Gaps = 45/179 (25%)

Query: 64  PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAG 123
           P +LGHE  G +       + ++ G  V       C  CK+C S   N C  +R      
Sbjct: 60  PMVLGHEVIGKIVHSDS--SGLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMR------ 111

Query: 124 VMMNDRKSRFSINGKPIYHFMGTST--------FSQYTVVHDVSVAKIDPQAPLDKVCLL 175
                              F G++         F++Y VV          +A  +KV  +
Sbjct: 112 -------------------FFGSAMYFPHVDGGFTRYKVVDTAQCIPYPEKAD-EKV--M 149

Query: 176 GCGVPTGLGAVWNTAKVEPGSI----VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230
               P    AV   A  + G +    V V G+G +G  +    K  GA+ ++  D+ P+
Sbjct: 150 AFAEPL---AVAIHAAHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPR 205

Length = 343

>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 5/86 (5%)

Query: 11 KAAVAWEPNK---PLVIEDVQVAPPQAG--EVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
          KA    +P     P  + D+++  P  G  ++ +++   ++   D    +G  P    P 
Sbjct: 2  KAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPK 61

Query: 66 ILGHEAAGIVESVGEGVTEVQPGDHV 91
          ILG +A+G+VE+VG  VT  + GD V
Sbjct: 62 ILGWDASGVVEAVGSEVTLFKVGDEV 87

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 10 CKAAVAWEPNKPLVIEDVQVA--PPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           KA V  +P   L +   ++    P AGEV +K+    L   D    +   P   +P + 
Sbjct: 1  MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVP 60

Query: 68 GHEAAGIVESVGEGVTEVQPGDHV 91
          G + AG+V +VG  VT  + GD V
Sbjct: 61 GVDGAGVVVAVGAKVTGWKVGDRV 84

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 49.0 bits (118), Expect = 6e-07
 Identities = 32/85 (37%), Positives = 40/85 (47%), Gaps = 5/85 (5%)

Query: 11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCI 66
          KA V  EP  P  L + +V    P  GEV I++    +   D     G    P G    I
Sbjct: 2  KAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASD-I 60

Query: 67 LGHEAAGIVESVGEGVTEVQPGDHV 91
          LG E AG+V +VG GVT  + GD V
Sbjct: 61 LGLEVAGVVVAVGPGVTGWKVGDRV 85

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score = 48.8 bits (117), Expect = 7e-07
 Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 24 IEDVQVAPPQAGEVRIKILFTALCHTDA-YTWSGKDPEGLFPCILGHEAAGIVESVGEGV 82
          I DV V  P  GEV +K  F  +  +D  +T    DP    P   G E  G V +VGEGV
Sbjct: 20 IVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGV 79

Query: 83 TEVQPGDHV 91
          T+ + GD V
Sbjct: 80 TDFKVGDAV 88

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|131869 TIGR02822, adh_fam_2, zinc-binding alcohol dehydrogenase family protein

 Score = 48.8 bits (116), Expect = 7e-07
 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 1/98 (1%)

Query: 21  PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGE 80
           PL   +  V  P  GE+ +++    +C TD +   G  P        GHE  G V   G 
Sbjct: 14  PLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPGHEVVGEVAGRGA 73

Query: 81  GVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVR 117
                  GD V I   +  C  C++C+ G  NLC   R
Sbjct: 74  DAGGFAVGDRVGIAWLRRTCGVCRYCRRGAENLCPASR 111

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized [Energy metabolism, Fermentation]. Length = 329

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 16 WEPNKPLVIEDVQVAPPQA-GEVRIKILFTALCHTDAYTWSGKDP-----EGLFPCILGH 69
           EP + L +E  ++ PP    EV +K+L   +   D     G  P         P + G+
Sbjct: 10 GEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGN 69

Query: 70 EAAGIVESVGEGVTEVQPGDHVIP 93
          E  G V  VG GV  ++PGD VIP
Sbjct: 70 EGVGEVVKVGSGVKSLKPGDWVIP 93

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 28 QVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86
          +VAPP  GEVRI++   +L   D     G  P    +P   G EA+G+V +VG  VT + 
Sbjct: 1  EVAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLA 60

Query: 87 PGDHVI 92
           GD VI
Sbjct: 61 VGDEVI 66

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303

>gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 12/87 (13%)

Query: 17  EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC----------- 65
           +P + + +EDV V     GEV + ++   + + + +   G+ P   F             
Sbjct: 25  DPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGE-PVSTFAARQRRGRDEPYH 83

Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVI 92
           I G +A+GIV +VGEGV   + GD V+
Sbjct: 84  IGGSDASGIVWAVGEGVKNWKVGDEVV 110

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 393

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCILGHEAAGIVESVG 79
          L I +     P+  +V IK+    +   D     GK   P G    ILG E AG VE VG
Sbjct: 16 LKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSE-ILGLEVAGYVEDVG 74

Query: 80 EGVTEVQPGDHVI 92
            V   + GD V+
Sbjct: 75 SDVKRFKEGDRVM 87

Length = 334

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 7/75 (9%)

Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAY----TWSGKDPEGLFPCILGHEAAGIVES 77
          L + +  +  P AGEV +K+  + +   D       +  + P    P   G++  G V++
Sbjct: 15 LKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPP---LPFTPGYDLVGRVDA 71

Query: 78 VGEGVTEVQPGDHVI 92
          +G GVT  + GD V 
Sbjct: 72 LGSGVTGFEVGDRVA 86

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score = 43.1 bits (103), Expect = 5e-05
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 67 LGHEAAGIVESVGEGVTEVQPGDHVI 92
          LG E AG+V  VG GVT +  GD V+
Sbjct: 26 LGGECAGVVTRVGPGVTGLAVGDRVM 51

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|188164 TIGR01751, crot-CoA-red, crotonyl-CoA reductase

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 37/175 (21%)

Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVI-PCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
           I+G +A+G+V  VG GVT  + GD V+  C Q +       + G   L  + R       
Sbjct: 80  IIGSDASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPD-GRDGDPMLSSEQR------- 131

Query: 125 MMNDRKSRFSINGKPIYHFMGT-STFSQYTVVHDVSVAKIDPQAPL----DKVCLLGCGV 179
                          I+ +     +F+++ +V D    ++ P+       +  C    G 
Sbjct: 132 ---------------IWGYETNFGSFAEFALVKD---YQLMPKPKHLTWEEAACPGLTG- 172

Query: 180 PTGLGAV--WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK 231
            T    +  WN A V+PG  V ++G  G +G    + A+A G + V  +   P+K
Sbjct: 173 ATAYRQLVGWNPAAVKPGDNVLIWGAAGGLGSYATQLARAGGGNPV-AVVSSPEK 226

The enzyme modelled by This model is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. Length = 398

>gnl|CDD|234024 TIGR02817, adh_fam_1, zinc-binding alcohol dehydrogenase family protein

 Score = 42.8 bits (101), Expect = 8e-05
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 6/85 (7%)

Query: 13 AVAWEPNKPL----VIEDVQVAPPQAGE--VRIKILFTALCHTDAYTWSGKDPEGLFPCI 66
          AV ++   P+     + D+ +  P+ G   + +++   ++   D    +   PE   P I
Sbjct: 2  AVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQPKI 61

Query: 67 LGHEAAGIVESVGEGVTEVQPGDHV 91
          LG +AAG+V +VG+ VT  +PGD V
Sbjct: 62 LGWDAAGVVVAVGDEVTLFKPGDEV 86

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model [Energy metabolism, Fermentation]. Length = 336

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 206 VGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA 240
           VGLA  + AKA GA+RVI +D   +K +      A
Sbjct: 2   VGLAAVQLAKALGAARVIAVDRSEEKLELAKELGA 36

Length = 131

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 11 KAAVAWEPNKPLVIEDVQVAPPQ--AGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCI 66
          KA    EP  P V+  V+V  P   AGEV I++    +   D    +GK   P G    I
Sbjct: 2  KAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASD-I 60

Query: 67 LGHEAAGIVESVGEGVTEVQPGDHV 91
          LG E AG V +VGEGV+  + GD V
Sbjct: 61 LGLEVAGEVVAVGEGVSRWKVGDRV 85

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|234094 TIGR03026, NDP-sugDHase, nucleotide sugar dehydrogenase

 Score = 39.5 bits (93), Expect = 8e-04
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA 238
           +AV GLG VGL +A      G   V G+DID +K D+ LN 
Sbjct: 3   IAVIGLGYVGLPLAALLADLGHD-VTGVDIDQEKVDK-LNK 41

Enzymes in this family catalyze the NAD-dependent alcohol-to-acid oxidation of nucleotide-linked sugars. Examples include UDP-glucose 6-dehydrogenase (1.1.1.22) , GDP-mannose 6-dehydrogenase (1.1.1.132) , UDP-N-acetylglucosamine 6-dehydrogenase (1.1.1.136), UDP-N-acetyl-D-galactosaminuronic acid dehydrogenase and UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase. These enzymes are most often involved in the biosynthesis of polysaccharides and are often found in operons devoted to that purpose. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. Length = 409

>gnl|CDD|223749 COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 1/38 (2%)

Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV 235
           + V GLG VGL +A  A A+   +VIG+DI+ KK D++
Sbjct: 12  IGVIGLGYVGLPLA-AAFASAGFKVIGVDINQKKVDKL 48

Length = 436

>gnl|CDD|176190 cd05288, PGDH, Prostaglandin dehydrogenases

 Score = 39.0 bits (92), Expect = 0.001
 Identities = 51/230 (22%), Positives = 75/230 (32%), Gaps = 71/230 (30%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAY--TWSGKDPEGLFPCILGH--EAAGI--- 74
             + +V +   + GEV ++ L+ ++   D Y   W         P  LG      G+   
Sbjct: 20  FELVEVPLPELKDGEVLVRTLYLSV---DPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEV 76

Query: 75  VESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFS 134
           VES        + GD V                                           
Sbjct: 77  VESRSPD---FKVGDLV------------------------------------------- 90

Query: 135 INGKPIYHFMGTSTFSQYTVVHDVS-VAKIDPQAPLDKVCLLG-CGVP--TGLGAVWNTA 190
                   F+G   + +Y VV   S + K+DP   L     LG  G+   T    +    
Sbjct: 91  ------SGFLG---WQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIG 141

Query: 191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNAL 239
           K +PG  V V    G VG  V + AK  GA RV+GI    +K   ++  L
Sbjct: 142 KPKPGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGIAGSDEKCRWLVEEL 190

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 20 KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DPEGLFPCILGHEAAGIVESV 78
          K L + + +V  P  GEV IK+    +  +D     G+       P   G E +G V + 
Sbjct: 16 KELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAA 75

Query: 79 GEGV 82
          G G 
Sbjct: 76 GGGP 79

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 62 LFPCILGHEAAGIVESVGEGVTEVQPGDHV 91
            P   G+ + G V  VG GVT  +PGD V
Sbjct: 19 PLPLPPGYSSVGRVVEVGSGVTGFKPGDRV 48

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases

 Score = 37.1 bits (87), Expect = 0.004
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL---FPCILGHEAAGIVESV 78
          L +  + +     G+V I++ +++L + DA   +G    G+   +P   G +AAG V S 
Sbjct: 15 LFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGN--GGVTRNYPHTPGIDAAGTVVSS 72

Query: 79 GEGVTEVQPGDHVI 92
                 + GD V+
Sbjct: 73 --DDPRFREGDEVL 84

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	100.0
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	100.0
PLN02740	381	Alcohol dehydrogenase-like	100.0
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	100.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	100.0
PLN02827	378	Alcohol dehydrogenase-like	100.0
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	100.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	100.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	100.0
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	100.0
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	100.0
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
PLN02514	357	cinnamyl-alcohol dehydrogenase	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	100.0
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	100.0
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	100.0
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	100.0
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	100.0
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	100.0
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	100.0
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	100.0
PRK10083	339	putative oxidoreductase; Provisional	100.0
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	100.0
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	100.0
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	100.0
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	100.0
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	100.0
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	100.0
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	100.0
PRK13771	334	putative alcohol dehydrogenase; Provisional	100.0
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	100.0
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	100.0
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	100.0
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	100.0
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	100.0
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	100.0
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	100.0
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	99.98
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.98
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	99.98
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	99.97
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	99.97
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	99.97
PLN02702	364	L-idonate 5-dehydrogenase	99.97
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	99.97
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.97
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.97
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	99.97
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.97
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.97
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.97
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.97
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.97
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.97
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	99.97
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.97
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	99.97
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.97
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.97
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.97
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	99.97
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.97
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.96
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	99.96
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.96
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.96
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	99.96
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	99.96
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	99.96
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.96
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	99.95
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	99.95
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.95
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	99.95
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.95
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	99.95
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	99.95
PTZ00354	334	alcohol dehydrogenase; Provisional	99.95
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	99.95
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.94
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.94
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.94
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.94
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.94
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.94
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.94
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.94
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.94
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.94
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.94
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.93
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.93
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.93
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.93
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.93
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.92
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.92
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.92
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.92
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	99.91
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.91
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.91
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.91
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.91
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.9
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.9
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.9
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.89
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.89
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.88
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.87
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.85
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.77
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.7
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.54
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.13
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.72
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	97.45
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.4
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	97.2
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.15
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	97.03
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.96
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.91
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.79
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.7
PLN02494	477	adenosylhomocysteinase	96.63
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.52
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.38
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	95.99
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	95.97
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	95.92
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	95.89
PRK04148	134	hypothetical protein; Provisional	95.81
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	95.8
PTZ00075	476	Adenosylhomocysteinase; Provisional	95.75
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	95.46
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	95.34
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	95.24
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	95.2
PRK08324	681	short chain dehydrogenase; Validated	95.09
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	94.91
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	94.91
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	94.53
PLN03209	576	translocon at the inner envelope of chloroplast su	94.53
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	94.47
PRK07831	262	short chain dehydrogenase; Provisional	94.24
PRK12548	289	shikimate 5-dehydrogenase; Provisional	94.14
PLN02780	320	ketoreductase/ oxidoreductase	94.13
PRK05866	293	short chain dehydrogenase; Provisional	94.12
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	94.05
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	94.01
PRK08213	259	gluconate 5-dehydrogenase; Provisional	93.94
PRK06841	255	short chain dehydrogenase; Provisional	93.79
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	93.79
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	93.76
PRK05854	313	short chain dehydrogenase; Provisional	93.72
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	93.71
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	93.64
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	93.56
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	93.53
PRK06196	315	oxidoreductase; Provisional	93.53
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	93.5
PF13823	23	ADH_N_assoc: Alcohol dehydrogenase GroES-associate	93.48
KOG1252	362	consensus Cystathionine beta-synthase and related	93.38
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	93.35
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	93.33
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	93.26
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	93.03
PRK06197	306	short chain dehydrogenase; Provisional	92.95
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	92.89
PRK13940	414	glutamyl-tRNA reductase; Provisional	92.76
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.57
PLN02253	280	xanthoxin dehydrogenase	92.56
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	92.55
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	92.38
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	92.37
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	92.26
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	92.12
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	92.09
PRK10669	558	putative cation:proton antiport protein; Provision	91.96
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	91.83
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	91.79
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	91.6
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	91.58
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	91.56
PRK06484	520	short chain dehydrogenase; Validated	91.44
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	91.32
PLN00203	519	glutamyl-tRNA reductase	91.31
PRK13403	335	ketol-acid reductoisomerase; Provisional	91.3
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	91.14
PLN03139	386	formate dehydrogenase; Provisional	91.06
PRK03562	621	glutathione-regulated potassium-efflux system prot	90.9
PRK06720	169	hypothetical protein; Provisional	90.86
PRK07574	385	formate dehydrogenase; Provisional	90.57
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	90.5
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	90.48
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	90.45
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	90.39
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	90.34
PRK14967	223	putative methyltransferase; Provisional	90.15
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	90.13
PRK06719	157	precorrin-2 dehydrogenase; Validated	89.9
PLN02928	347	oxidoreductase family protein	89.88
PRK12367	245	short chain dehydrogenase; Provisional	89.86
PLN02686	367	cinnamoyl-CoA reductase	89.85
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	89.76
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	89.75
PRK12814	652	putative NADPH-dependent glutamate synthase small	89.43
PRK03659	601	glutathione-regulated potassium-efflux system prot	89.33
PRK13243	333	glyoxylate reductase; Reviewed	89.33
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	89.13
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	89.1
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	89.09
PRK14982	340	acyl-ACP reductase; Provisional	89.03
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	89.02
PRK08328	231	hypothetical protein; Provisional	88.93
PRK14030	445	glutamate dehydrogenase; Provisional	88.83
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	88.7
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	88.64
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	88.62
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	88.5
KOG1208	314	consensus Dehydrogenases with different specificit	88.5
PRK13984	604	putative oxidoreductase; Provisional	88.48
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	88.46
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	88.45
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.29
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	88.14
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	88.13
PLN03013	429	cysteine synthase	88.1
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	87.95
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	87.87
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	87.85
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	87.73
PRK06436	303	glycerate dehydrogenase; Provisional	87.62
PRK07201	657	short chain dehydrogenase; Provisional	87.62
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	87.58
PRK05855	582	short chain dehydrogenase; Validated	87.57
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	87.56
PRK12480	330	D-lactate dehydrogenase; Provisional	87.46
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.45
PRK07985	294	oxidoreductase; Provisional	87.36
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	87.32
PRK06932	314	glycerate dehydrogenase; Provisional	87.28
PRK14031	444	glutamate dehydrogenase; Provisional	87.16
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	87.04
PRK08317	241	hypothetical protein; Provisional	87.03
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	86.88
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	86.83
PRK11761	296	cysM cysteine synthase B; Provisional	86.77
PRK06487	317	glycerate dehydrogenase; Provisional	86.67
PRK12831	464	putative oxidoreductase; Provisional	86.66
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	86.6
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	86.57
PRK06701	290	short chain dehydrogenase; Provisional	86.49
PRK09496	453	trkA potassium transporter peripheral membrane com	86.46
PRK08223	287	hypothetical protein; Validated	86.39
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	86.28
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	86.27
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	86.23
PRK00811	283	spermidine synthase; Provisional	86.23
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	86.16
TIGR01138	290	cysM cysteine synthase B. Alternate name: O-acetyl	86.09
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	86.01
PLN02427	386	UDP-apiose/xylose synthase	85.95
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	85.87
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	85.71
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	85.65
PRK06128	300	oxidoreductase; Provisional	85.55
PLN02556	368	cysteine synthase/L-3-cyanoalanine synthase	85.54
PRK15116	268	sulfur acceptor protein CsdL; Provisional	85.47
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	85.35
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	85.31
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	85.11
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	85.06
PRK06141	314	ornithine cyclodeaminase; Validated	85.04
PRK05479	330	ketol-acid reductoisomerase; Provisional	84.94
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	84.85
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	84.82
PRK08618	325	ornithine cyclodeaminase; Validated	84.82
PLN02565	322	cysteine synthase	84.7
PLN02256	304	arogenate dehydrogenase	84.59
PRK06153	393	hypothetical protein; Provisional	84.46
PRK10717	330	cysteine synthase A; Provisional	84.36
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	84.35
PRK11207	197	tellurite resistance protein TehB; Provisional	84.23
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	84.22
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	84.11
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	83.87
PRK07340	304	ornithine cyclodeaminase; Validated	83.85
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	83.84
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	83.84
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	83.62
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	83.45
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	83.37
PRK08291	330	ectoine utilization protein EutC; Validated	83.37
PLN02366	308	spermidine synthase	83.24
cd01562	304	Thr-dehyd Threonine dehydratase: The first step in	83.12
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	83.07
PRK12779	944	putative bifunctional glutamate synthase subunit b	83.04
COG0281	432	SfcA Malic enzyme [Energy production and conversio	83.02
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	82.85
PLN02695	370	GDP-D-mannose-3',5'-epimerase	82.79
PRK12770	352	putative glutamate synthase subunit beta; Provisio	82.61
PLN02306	386	hydroxypyruvate reductase	82.56
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	82.56
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	82.5
PF00289	110	CPSase_L_chain: Carbamoyl-phosphate synthase L cha	82.17
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	82.15
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	82.11
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	82.04
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	82.02
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	81.99
TIGR01139	298	cysK cysteine synthase A. This model distinguishes	81.99
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	81.9
PRK12831	464	putative oxidoreductase; Provisional	81.86
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	81.86
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	81.83
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	81.73
PLN02477	410	glutamate dehydrogenase	81.65
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	81.64
PTZ00414	100	10 kDa heat shock protein; Provisional	81.63
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	81.59
PLN00011	323	cysteine synthase	81.39
PF13580	138	SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_	81.25
TIGR01136	299	cysKM cysteine synthases. This model discriminates	81.22
PRK09414	445	glutamate dehydrogenase; Provisional	81.1
PRK07411	390	hypothetical protein; Validated	81.02
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	80.99
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	80.97
PRK08132	547	FAD-dependent oxidoreductase; Provisional	80.77
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	80.74
PLN02206	442	UDP-glucuronate decarboxylase	80.71
cd06448	316	L-Ser-dehyd Serine dehydratase is a pyridoxal phos	80.59
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	80.45
PLN02735	1102	carbamoyl-phosphate synthase	80.42
PLN02356	423	phosphateglycerate kinase	80.33
PRK08198	404	threonine dehydratase; Provisional	80.31
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	80.24
PRK07048	321	serine/threonine dehydratase; Validated	80.16

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=2.2e-52  Score=357.58  Aligned_cols=212  Identities=38%  Similarity=0.532  Sum_probs=201.2

Q ss_pred             ccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087            7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (243)
Q Consensus         7 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~   86 (243)
                      +++|||+++.+.+++++++|++.|+|+++||+|||+++|+|++|++.+.|.++...+|.++|||.+|+|+++|++|+.|+
T Consensus         1 ~~~mkA~~~~~~~~pl~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~~~P~ipGHEivG~V~~vG~~V~~~k   80 (339)
T COG1064           1 MMTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIPGHEIVGTVVEVGEGVTGLK   80 (339)
T ss_pred             CcceEEEEEccCCCCceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCCCCCCccCCcceEEEEEEecCCCccCC
Confidence            46899999999999999999999999999999999999999999999999999888999999999999999999999999


Q ss_pred             CCCEEee-ecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCC
Q 026087           87 PGDHVIP-CYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (243)
Q Consensus        87 ~Gd~V~~-~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~  165 (243)
                      +||||.+ +...+|++|+||.+|+.++|++...   .|++ .+|                  +|+||+++++.+++++|+
T Consensus        81 ~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~---~gy~-~~G------------------Gyaeyv~v~~~~~~~iP~  138 (339)
T COG1064          81 VGDRVGVGWLVISCGECEYCRSGNENLCPNQKI---TGYT-TDG------------------GYAEYVVVPARYVVKIPE  138 (339)
T ss_pred             CCCEEEecCccCCCCCCccccCcccccCCCccc---ccee-ecC------------------cceeEEEEchHHeEECCC
Confidence            9999998 8899999999999999999998664   4555 455                  999999999999999999


Q ss_pred             CCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++++++||.+.|+..|.|+++ +..+++||++|+|.|.|++|++++|+|+++|+ +|++++++++|+++++++|||.
T Consensus       139 ~~d~~~aApllCaGiT~y~al-k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGAd~  213 (339)
T COG1064         139 GLDLAEAAPLLCAGITTYRAL-KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADH  213 (339)
T ss_pred             CCChhhhhhhhcCeeeEeeeh-hhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCCcE
Confidence            999999999999999999987 55899999999999999999999999999998 9999999999999999999985

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=2.4e-48  Score=327.25  Aligned_cols=233  Identities=61%  Similarity=1.046  Sum_probs=225.9

Q ss_pred             cceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCC
Q 026087            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (243)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~   87 (243)
                      |.+||++..++++||+++|+++++|++|||+||+.|+|+||+|...++|..+.+ +|.++|||.+|+|+++|++|+.+++
T Consensus         1 mk~~aAV~~~~~~Pl~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~~-~P~vLGHEgAGiVe~VG~gVt~vkp   79 (366)
T COG1062           1 MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEG-FPAVLGHEGAGIVEAVGEGVTSVKP   79 (366)
T ss_pred             CCceEeeeecCCCCeEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCCC-CceecccccccEEEEecCCccccCC
Confidence            467899999999999999999999999999999999999999999999999886 9999999999999999999999999


Q ss_pred             CCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCC
Q 026087           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (243)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~  167 (243)
                      ||+|+..+...|++|.+|.+|++++|.......+.|.. .||++|+..++.+++++.+.++|++|.++++.+++|++++.
T Consensus        80 GDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m-~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~  158 (366)
T COG1062          80 GDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTM-PDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDA  158 (366)
T ss_pred             CCEEEEcccCCCCCCchhhCCCcccccchhhhcccccc-cCCceeeecCCcceeeeeccccchhheeecccceEECCCCC
Confidence            99999988889999999999999999998888888876 99999999999999999999999999999999999999999


Q ss_pred             ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++.++++.+...|.+.++.+.+++++|++|.|+|.|.+|++++|-|+..|+++||++|.+++|++++++|||+-
T Consensus       159 p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~  233 (366)
T COG1062         159 PLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATH  233 (366)
T ss_pred             CccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCce
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999974

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=7.4e-48  Score=319.92  Aligned_cols=238  Identities=75%  Similarity=1.233  Sum_probs=230.6

Q ss_pred             CcccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCc
Q 026087            5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE   84 (243)
Q Consensus         5 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~   84 (243)
                      .+.+++||++..++++||.++|+..++|+..||+||++++++|++|...|+|..+...||.++|||++|+|+.+|.+|++
T Consensus         3 gkvI~CKAAV~w~a~~PL~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~~~fP~IlGHEaaGIVESvGegV~~   82 (375)
T KOG0022|consen    3 GKVITCKAAVAWEAGKPLVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPEGLFPVILGHEAAGIVESVGEGVTT   82 (375)
T ss_pred             CCceEEeEeeeccCCCCeeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCccccCceEecccceeEEEEecCCccc
Confidence            46789999999999999999999999999999999999999999999999999887899999999999999999999999


Q ss_pred             CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (243)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp  164 (243)
                      +++||+|+..+...|++|.+|+++..|.|.........+...+||.+|+.-+|+.+||+++..+|+||.+++...+++|+
T Consensus        83 vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~kId  162 (375)
T KOG0022|consen   83 VKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAKID  162 (375)
T ss_pred             cCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeEecC
Confidence            99999999999999999999999999999999888877888789999999999999999999999999999999999999


Q ss_pred             CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +...++.+++|.+.+.|+|.|.++.+++++|+++.|+|.|.+|+++++-||+.|+++||++|.+++|.+.++++||+-
T Consensus       163 ~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe  240 (375)
T KOG0022|consen  163 PSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATE  240 (375)
T ss_pred             CCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcce
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999973

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.9e-46  Score=311.63  Aligned_cols=226  Identities=31%  Similarity=0.461  Sum_probs=201.1

Q ss_pred             CCCCCcccceeEEEEecCCC--CeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEe
Q 026087            1 MSTEGQVITCKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESV   78 (243)
Q Consensus         1 m~~~~~~~~~~a~~~~~~~~--~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~   78 (243)
                      |++...+.++++|.+++++.  ++++.++++|+|.++||+|||+++|||++|++.+.|.++...+|+++|||.+|+|+++
T Consensus         1 ~~~~~~p~k~~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~s~~PlV~GHEiaG~Vvkv   80 (360)
T KOG0023|consen    1 MSSMSIPEKQFGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGLSKYPLVPGHEIAGVVVKV   80 (360)
T ss_pred             CCcccCchhhEEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCcccCCccCCceeeEEEEEE
Confidence            66677889999999999988  5777999999999999999999999999999999999988899999999999999999


Q ss_pred             CCCCCcCCCCCEEeee-cccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEecc
Q 026087           79 GEGVTEVQPGDHVIPC-YQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD  157 (243)
Q Consensus        79 G~~~~~~~~Gd~V~~~-~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  157 (243)
                      |++++.|++||||-+- ...+|..|.+|+++..++|+..-. ...|+. .||             ...+|+|++|+++++
T Consensus        81 Gs~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~-t~~g~~-~DG-------------t~~~ggf~~~~~v~~  145 (360)
T KOG0023|consen   81 GSNVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHF-TYNGVY-HDG-------------TITQGGFQEYAVVDE  145 (360)
T ss_pred             CCCcccccccCeeeeeEEeccccCccccccCCcccCCceeE-eccccc-cCC-------------CCccCccceeEEEee
Confidence            9999999999999554 567899999999999999995221 123333 455             556679999999999


Q ss_pred             ceeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh-hHHHHHH
Q 026087          158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP-KKFDRVL  236 (243)
Q Consensus       158 ~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~-~~~~~~~  236 (243)
                      ..+++||+++..++||.++|+..|+|.++ ...+++||+++.|.|+|++|.+++|+||+||. +|+++++++ +|.+.++
T Consensus       146 ~~a~kIP~~~pl~~aAPlLCaGITvYspL-k~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~kkeea~~  223 (360)
T KOG0023|consen  146 VFAIKIPENLPLASAAPLLCAGITVYSPL-KRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSKKKEEAIK  223 (360)
T ss_pred             eeEEECCCCCChhhccchhhcceEEeehh-HHcCCCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCchhHHHHHH
Confidence            99999999999999999999999999965 77778899999999997799999999999999 999999988 5666777


Q ss_pred             HhcccCC
Q 026087          237 NALAMSL  243 (243)
Q Consensus       237 ~~Ga~~~  243 (243)
                      .|||+.+
T Consensus       224 ~LGAd~f  230 (360)
T KOG0023|consen  224 SLGADVF  230 (360)
T ss_pred             hcCccee
Confidence            7999864

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.3e-44  Score=302.38  Aligned_cols=211  Identities=29%  Similarity=0.406  Sum_probs=195.4

Q ss_pred             cceeEEEEecCCCCeEEEeeccCCC-CCCcEEEEEeEEecChhhHHhhcCCCCCC---CCCeeeeeceEEEEEEeCCCCC
Q 026087            8 ITCKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEG---LFPCILGHEAAGIVESVGEGVT   83 (243)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~-~~~evlVkv~a~~i~~~D~~~~~g~~~~~---~~p~~~G~e~vG~V~~~G~~~~   83 (243)
                      .+|+|+++.++++ ++++++|.|++ .|+||+|++.++|||++|++.+.+...-.   +.|+++|||.+|+|+++|++|+
T Consensus         3 ~~~~A~vl~g~~d-i~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk   81 (354)
T KOG0024|consen    3 ADNLALVLRGKGD-IRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVK   81 (354)
T ss_pred             cccceeEEEccCc-eeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccccc
Confidence            3799999999998 99999999987 99999999999999999999998765332   5899999999999999999999


Q ss_pred             cCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEc
Q 026087           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (243)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l  163 (243)
                      ++++||||++.|..+|+.|++|++|+.|.|++-.+   .+..+.||                  ++++|++.++++++||
T Consensus        82 ~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f---~atpp~~G------------------~la~y~~~~~dfc~KL  140 (354)
T KOG0024|consen   82 HLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVF---CATPPVDG------------------TLAEYYVHPADFCYKL  140 (354)
T ss_pred             ccccCCeEEecCCCccccchhhhCcccccCCcccc---ccCCCcCC------------------ceEEEEEechHheeeC
Confidence            99999999999999999999999999999998776   34444566                  9999999999999999


Q ss_pred             CCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      |++++++++|++. +++.+++|. +++.+++|++|||+|+|++|+++...||++|+.+|+.++..++|+++++++||+.
T Consensus       141 Pd~vs~eeGAl~e-PLsV~~HAc-r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~  217 (354)
T KOG0024|consen  141 PDNVSFEEGALIE-PLSVGVHAC-RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATV  217 (354)
T ss_pred             CCCCchhhccccc-chhhhhhhh-hhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeE
Confidence            9999999999887 588999975 8899999999999999999999999999999999999999999999999999985

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=100.00  E-value=1e-40  Score=295.09  Aligned_cols=232  Identities=64%  Similarity=1.075  Sum_probs=198.2

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd   89 (243)
                      |||+++...++.++++++|.|.|+++||+|||++++||++|++.+.|.++...+|.++|||++|+|+++|+++++|++||
T Consensus         2 ~~a~~~~~~~~~l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd   81 (368)
T TIGR02818         2 SRAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHEGAGIVEAVGEGVTSVKVGD   81 (368)
T ss_pred             ceEEEEecCCCCeEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCCCCCCeeeccccEEEEEEECCCCccCCCCC
Confidence            78999999888899999999999999999999999999999999998765556799999999999999999999999999


Q ss_pred             EEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCCh
Q 026087           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (243)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~  169 (243)
                      ||++.+..+|++|.+|..++.+.|.+.......|+. .+|..++..+|...++..+.|+|+||+.+|.+.++++|+++++
T Consensus        82 rV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l~~  160 (368)
T TIGR02818        82 HVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLM-PDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPL  160 (368)
T ss_pred             EEEEcCCCCCCCChhhhCCCcccccCcccccccccc-cCCccccccCCCcccccccCccceeeEEechhheEECCCCCCH
Confidence            999988889999999999999999875432222322 1111111111222222223469999999999999999999999


Q ss_pred             hhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++++++.+++.|+|+++....++++|++|||+|+|++|++++|+|+++|+.+|++++.+++|+++++++|++.
T Consensus       161 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~  233 (368)
T TIGR02818       161 EEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATD  233 (368)
T ss_pred             HHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCe
Confidence            9999999999999998878888999999999999999999999999999977999999999999999999863

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=100.00  E-value=1.5e-40  Score=294.06  Aligned_cols=235  Identities=69%  Similarity=1.159  Sum_probs=201.7

Q ss_pred             cceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCC
Q 026087            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (243)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~   87 (243)
                      ++|||+++.++++++++++++.|+|+++||+|||.+++||++|++.+.|..+...+|.++|||++|+|+++|+++++|++
T Consensus         1 ~~~ka~~~~~~~~~~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~   80 (369)
T cd08301           1 ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRILGHEAAGIVESVGEGVTDLKP   80 (369)
T ss_pred             CccEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCCCCCCcccccccceEEEEeCCCCCcccc
Confidence            47999999998888999999999999999999999999999999999987665567899999999999999999999999


Q ss_pred             CCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCC
Q 026087           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (243)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~  167 (243)
                      ||||++.+..+|++|++|.++.++.|.........|....++..++...|...+++.+.|+|+||+.++...++++|+++
T Consensus        81 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~~  160 (369)
T cd08301          81 GDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPEA  160 (369)
T ss_pred             CCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEEEecccEEECCCCC
Confidence            99999999999999999999999999876432222222111112222223333444455799999999999999999999


Q ss_pred             ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++++++++.+++.|+|++++...++++|++|||+|+|.+|++++|+|+.+|+.+|++++++++|+++++++|++.
T Consensus       161 ~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~  235 (369)
T cd08301         161 PLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTE  235 (369)
T ss_pred             CHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCce
Confidence            999999999899999998878888999999999999999999999999999977999999999999999999863

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PLN02740 Alcohol dehydrogenase-like

Probab=100.00  E-value=2.1e-40  Score=294.42  Aligned_cols=238  Identities=59%  Similarity=1.070  Sum_probs=198.7

Q ss_pred             CcccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC-CCCCCeeeeeceEEEEEEeCCCCC
Q 026087            5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVT   83 (243)
Q Consensus         5 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~-~~~~p~~~G~e~vG~V~~~G~~~~   83 (243)
                      +++++|||+++.++++++.+++++.|.|+++||+|||++++||++|++.+.|..+ ...+|.++|||++|+|+++|++++
T Consensus         6 ~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~   85 (381)
T PLN02740          6 GKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEGVE   85 (381)
T ss_pred             ccceeeEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCCCC
Confidence            4678999999999987789999999999999999999999999999999988753 236789999999999999999999


Q ss_pred             cCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCcccccc--CCcceeeecCCcceeeEEEeccceeE
Q 026087           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSI--NGKPIYHFMGTSTFSQYTVVHDVSVA  161 (243)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~  161 (243)
                      .|++||||++.+..+|++|.+|.++.++.|+........+....+|..++..  .+...++....|+|+||+.++.+.++
T Consensus        86 ~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~  165 (381)
T PLN02740         86 DLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVV  165 (381)
T ss_pred             cCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehHHeE
Confidence            9999999999999999999999999999998754321100000011000000  00111122235699999999999999


Q ss_pred             EcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       162 ~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      ++|+++++++++.+.+++.|+|+++....++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++
T Consensus       166 ~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~  245 (381)
T PLN02740        166 KIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGIT  245 (381)
T ss_pred             ECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCc
Confidence            99999999999999999999999887888999999999999999999999999999996799999999999999999986


Q ss_pred             C
Q 026087          242 S  242 (243)
Q Consensus       242 ~  242 (243)
                      .
T Consensus       246 ~  246 (381)
T PLN02740        246 D  246 (381)
T ss_pred             E
Confidence            3

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=100.00  E-value=3.8e-40  Score=291.46  Aligned_cols=234  Identities=76%  Similarity=1.232  Sum_probs=201.5

Q ss_pred             cceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCC
Q 026087            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (243)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~   87 (243)
                      ++|||+++.+.+++++++++|.|.|+++||+|||+++++|++|++.+.|.++...+|.++|||++|+|+++|+++++|++
T Consensus         1 ~~~~a~~~~~~~~~~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~v   80 (368)
T cd08300           1 ITCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVILGHEGAGIVESVGEGVTSVKP   80 (368)
T ss_pred             CcceEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCccCCCCceeccceeEEEEEeCCCCccCCC
Confidence            37899999988888999999999999999999999999999999999887655568999999999999999999999999


Q ss_pred             CCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCC
Q 026087           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (243)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~  167 (243)
                      ||+|++.+..+|+.|.+|.+++++.|.+.....+.|.. .+|..++..+|...++..+.|+|+||+.++.+.++++|+++
T Consensus        81 GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l  159 (368)
T cd08300          81 GDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLM-PDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEA  159 (368)
T ss_pred             CCEEEEcCCCCCCCChhhcCCCcCcCCCcccccccccc-CCCccccccCCcccccccccccceeEEEEchhceEeCCCCC
Confidence            99999988899999999999999999875432222322 12222222233333444456799999999999999999999


Q ss_pred             ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++++++.+.+++.|+|+++.....+++|++|||+|+|.+|++++|+|+.+|+++|++++++++|+++++++|++.
T Consensus       160 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~  234 (368)
T cd08300         160 PLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATD  234 (368)
T ss_pred             ChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCE
Confidence            999999999999999998877888999999999999999999999999999977999999999999999999863

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=100.00  E-value=2.1e-39  Score=286.99  Aligned_cols=231  Identities=45%  Similarity=0.756  Sum_probs=193.3

Q ss_pred             eeEEEEecCC--------CCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCC
Q 026087           10 CKAAVAWEPN--------KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG   81 (243)
Q Consensus        10 ~~a~~~~~~~--------~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~   81 (243)
                      |||+++.+.+        +.+++++++.|.|+++||+|||.+++||++|++++.|..+. .+|.++|||++|+|+++|++
T Consensus         1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~~-~~p~i~GhE~~G~V~~vG~~   79 (371)
T cd08281           1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPR-PLPMALGHEAAGVVVEVGEG   79 (371)
T ss_pred             CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCCC-CCCccCCccceeEEEEeCCC
Confidence            7899999865        34899999999999999999999999999999999887543 57899999999999999999


Q ss_pred             CCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeE
Q 026087           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA  161 (243)
Q Consensus        82 ~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  161 (243)
                      +++|++||||++.+...|++|.+|.+|+++.|.........|.. .+|..++..++....+..+.|+|+||+.++...++
T Consensus        80 v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~~~  158 (371)
T cd08281          80 VTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTL-LSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVV  158 (371)
T ss_pred             CCcCCCCCEEEEccCCCCCCCccccCCCcccccCcccccccccc-ccCcccccccCcccccccCcccceeeEEecccceE
Confidence            99999999999888889999999999999999875432222221 11111111111111111224699999999999999


Q ss_pred             EcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       162 ~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      ++|+++++++++.+.++..|||+++....++++|++|||.|+|.+|++++|+|+.+|+++|++++++++|+++++++|++
T Consensus       159 ~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~  238 (371)
T cd08281         159 KIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGAT  238 (371)
T ss_pred             ECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCc
Confidence            99999999999999989999999887888899999999999999999999999999996799999999999999999986


Q ss_pred             C
Q 026087          242 S  242 (243)
Q Consensus       242 ~  242 (243)
                      .
T Consensus       239 ~  239 (371)
T cd08281         239 A  239 (371)
T ss_pred             e
Confidence            4

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PLN02827 Alcohol dehydrogenase-like

Probab=100.00  E-value=2e-38  Score=281.46  Aligned_cols=234  Identities=54%  Similarity=0.988  Sum_probs=192.2

Q ss_pred             CcccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCc
Q 026087            5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE   84 (243)
Q Consensus         5 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~   84 (243)
                      ++...|||+++.++++.++++|++.|.|+++||+|||.+++||++|++.+.+..   .+|.++|||++|+|+++|+++++
T Consensus         8 ~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~---~~p~i~GhE~~G~V~~vG~~v~~   84 (378)
T PLN02827          8 PNVITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA---LFPRIFGHEASGIVESIGEGVTE   84 (378)
T ss_pred             cccceeEEEEEecCCCCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC---CCCeeecccceEEEEEcCCCCcc
Confidence            334679999999988779999999999999999999999999999999987742   46789999999999999999999


Q ss_pred             CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (243)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp  164 (243)
                      |++||+|++.+...|++|.+|.++.+++|+..... ..|....+...++...|...++....|+|+||+.+|...++++|
T Consensus        85 ~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~~~~~~iP  163 (378)
T PLN02827         85 FEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLE-RKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVD  163 (378)
T ss_pred             cCCCCEEEEecCCCCCCChhhhCcCcccccCcccc-ccccccCCCcccccccCcccccccccccceeeEEechhheEECC
Confidence            99999999998889999999999999999874321 11111000000010011111111124699999999999999999


Q ss_pred             CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++++++++.+.+++.++|.++....++++|++|||+|+|++|++++|+|+++|+.+|++++++++|.++++++|++.
T Consensus       164 ~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~  241 (378)
T PLN02827        164 PLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTD  241 (378)
T ss_pred             CCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcE
Confidence            999999999988888889987767788999999999999999999999999999967888988999999999999863

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=100.00  E-value=2.4e-38  Score=279.70  Aligned_cols=231  Identities=64%  Similarity=1.079  Sum_probs=197.6

Q ss_pred             ceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087            9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (243)
Q Consensus         9 ~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G   88 (243)
                      .|||+++.+++++++++++|.|.+.++||+|||+++++|++|++.+.|..+ ..+|.++|||++|+|+++|+++++|++|
T Consensus         2 ~~ka~~~~~~~~~~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~G   80 (365)
T cd08277           2 KCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA-TLFPVILGHEGAGIVESVGEGVTNLKPG   80 (365)
T ss_pred             ccEEEEEccCCCCcEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC-CCCCeecccceeEEEEeeCCCCccCCCC
Confidence            588999998887799999999999999999999999999999999988764 4678999999999999999999999999


Q ss_pred             CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCC
Q 026087           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (243)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~  168 (243)
                      |+|++.+...|++|.+|.++..++|++.... ..|.. .++.......|...+++.+.|+|+||+.++.+.++++|++++
T Consensus        81 drV~~~~~~~c~~c~~c~~g~~~~c~~~~~~-~~g~~-~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l~  158 (365)
T cd08277          81 DKVIPLFIGQCGECSNCRSGKTNLCQKYRAN-ESGLM-PDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAP  158 (365)
T ss_pred             CEEEECCCCCCCCCchhcCcCcccCcCcccc-ccccc-cCCccccccCCcccccccccccceeeEEEchhheEECCCCCC
Confidence            9999988889999999999999999875432 11222 222111111222223333457999999999999999999999


Q ss_pred             hhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++++.+.+++.|+|+++....++++|++|||+|+|.+|++++|+|+.+|+.+|++++++++|+++++++|++.
T Consensus       159 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~  232 (365)
T cd08277         159 LEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATD  232 (365)
T ss_pred             HHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCc
Confidence            99999999999999998777888999999999999999999999999999977999999999999999999863

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=100.00  E-value=2.9e-38  Score=278.42  Aligned_cols=224  Identities=40%  Similarity=0.649  Sum_probs=192.0

Q ss_pred             ceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087            9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (243)
Q Consensus         9 ~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G   88 (243)
                      ||||+++.+++.++++++++.|.|+++||+|||.++++|++|++.+.|..+. .+|.++|||++|+|+++|+++++|++|
T Consensus         1 ~mka~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~~-~~p~i~G~e~~G~V~~vG~~v~~~~~G   79 (358)
T TIGR03451         1 TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIND-EFPFLLGHEAAGVVEAVGEGVTDVAPG   79 (358)
T ss_pred             CcEEEEEccCCCCCEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCccc-cCCcccccceEEEEEEeCCCCcccCCC
Confidence            6999999999988999999999999999999999999999999999886543 578899999999999999999999999


Q ss_pred             CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCC
Q 026087           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (243)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~  168 (243)
                      |+|++.+...|++|.+|.++++++|....... ......+|        .......+.|+|+||+.++++.++++|++++
T Consensus        80 drV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~-~~~~~~~g--------~~~~~~~~~G~~aey~~v~~~~~~~ip~~~~  150 (358)
T TIGR03451        80 DYVVLNWRAVCGQCRACKRGRPWYCFDTHNAT-QKMTLTDG--------TELSPALGIGAFAEKTLVHAGQCTKVDPAAD  150 (358)
T ss_pred             CEEEEccCCCCCCChHHhCcCcccCcCccccc-cccccccC--------cccccccccccccceEEEehhheEECCCCCC
Confidence            99999999999999999999999997532110 00000001        0000011246999999999999999999999


Q ss_pred             hhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++++.+.+++.++|.++.....+++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++.
T Consensus       151 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~  224 (358)
T TIGR03451       151 PAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATH  224 (358)
T ss_pred             hhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCce
Confidence            99999999899999987777888999999999999999999999999999966999999999999999999864

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=100.00  E-value=3.8e-38  Score=275.33  Aligned_cols=210  Identities=28%  Similarity=0.436  Sum_probs=187.1

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQPG   88 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~~G   88 (243)
                      |||+++.+++. +++++++.|.|+++||+||+.++++|++|++.+.+.+.. ..+|.++|||++|+|+++|+++++|++|
T Consensus         1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   79 (339)
T cd08239           1 MRGAVFPGDRT-VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFRVG   79 (339)
T ss_pred             CeEEEEecCCc-eEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCCCC
Confidence            78999987765 999999999999999999999999999999998776432 2457899999999999999999999999


Q ss_pred             CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCC
Q 026087           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (243)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~  168 (243)
                      |+|++.+...|++|.+|.+++++.|.....  .+|.. .                  .|+|++|+.++.+.++++|++++
T Consensus        80 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~--~~g~~-~------------------~G~~ae~~~v~~~~~~~~P~~~~  138 (339)
T cd08239          80 DRVMVYHYVGCGACRNCRRGWMQLCTSKRA--AYGWN-R------------------DGGHAEYMLVPEKTLIPLPDDLS  138 (339)
T ss_pred             CEEEECCCCCCCCChhhhCcCcccCcCccc--ccccC-C------------------CCcceeEEEechHHeEECCCCCC
Confidence            999999999999999999999999987653  12322 2                  24999999999999999999999


Q ss_pred             hhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++++++.+++.|||+++ ....+++|++|||+|+|.+|++++|+|+.+|+++|++++++++|.++++++|++.
T Consensus       139 ~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~  211 (339)
T cd08239         139 FADGALLLCGIGTAYHAL-RRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADF  211 (339)
T ss_pred             HHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE
Confidence            999999999999999976 5567899999999999999999999999999955999999999999999999864

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=100.00  E-value=2.1e-37  Score=276.06  Aligned_cols=215  Identities=28%  Similarity=0.394  Sum_probs=179.4

Q ss_pred             ceeEEEEecCCCCeEEEeeccCCCC-------CCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCC
Q 026087            9 TCKAAVAWEPNKPLVIEDVQVAPPQ-------AGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG   81 (243)
Q Consensus         9 ~~~a~~~~~~~~~~~~~~~~~p~~~-------~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~   81 (243)
                      -|||+++.++++ ++++++|.|.|+       +|||||||+++|||++|++++.|..+. .+|.++|||++|+|+++|++
T Consensus         2 ~mka~v~~~~~~-~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~~-~~p~i~GhE~~G~V~~vG~~   79 (393)
T TIGR02819         2 GNRGVVYLGPGK-VEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTTA-PTGLVLGHEITGEVIEKGRD   79 (393)
T ss_pred             CceEEEEecCCc-eeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCCC-CCCccccceeEEEEEEEcCc
Confidence            488999998886 999999999874       689999999999999999999886532 57899999999999999999


Q ss_pred             CCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCC---CCCceecCCCccccccCCcceeeecCCcceeeEEEeccc
Q 026087           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGA---TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV  158 (243)
Q Consensus        82 ~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~---~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  158 (243)
                      +++|++||||++.+...|++|.+|.+|++++|.+....   ..+|.... |              ...|+|+||+.+|..
T Consensus        80 V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~-~--------------~~~G~~aey~~v~~~  144 (393)
T TIGR02819        80 VEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDM-G--------------GWVGGQSEYVMVPYA  144 (393)
T ss_pred             cccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceeccccc-C--------------CCCCceEEEEEechh
Confidence            99999999999999999999999999999999974311   01121100 0              012599999999964


Q ss_pred             --eeEEcCCCCCh----hhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHH
Q 026087          159 --SVAKIDPQAPL----DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (243)
Q Consensus       159 --~~~~lp~~~~~----~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~  232 (243)
                        .++++|++++.    .+++.+...+.++|+++ ...++++|++|||.|+|++|++++|+|+.+|++.|++++.+++|+
T Consensus       145 ~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~  223 (393)
T TIGR02819       145 DFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA-VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARL  223 (393)
T ss_pred             hCceEECCCcccccccccceeeeccHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH
Confidence              79999998753    34566777888999976 457899999999998899999999999999996677777888999


Q ss_pred             HHHHHhccc
Q 026087          233 DRVLNALAM  241 (243)
Q Consensus       233 ~~~~~~Ga~  241 (243)
                      ++++++|++
T Consensus       224 ~~a~~~Ga~  232 (393)
T TIGR02819       224 AQARSFGCE  232 (393)
T ss_pred             HHHHHcCCe
Confidence            999999985

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=3.7e-37  Score=271.71  Aligned_cols=221  Identities=25%  Similarity=0.319  Sum_probs=182.6

Q ss_pred             cccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcC
Q 026087            6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV   85 (243)
Q Consensus         6 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~   85 (243)
                      .|+.++++.+.+....+++.+++.|.|+++||+|||.+++||++|++++.|.++...+|.++|||++|+|+++|+++++|
T Consensus         9 ~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~   88 (360)
T PLN02586          9 HPQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTKLGKNVKKF   88 (360)
T ss_pred             chhheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCCCCCCccCCcceeEEEEEECCCCCcc
Confidence            34556677777766668999999999999999999999999999999998866544678999999999999999999999


Q ss_pred             CCCCEEeeecc-cCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087           86 QPGDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (243)
Q Consensus        86 ~~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp  164 (243)
                      ++||+|++.+. ..|++|.+|.+|+++.|++...... ... .+|             ....|+|+||+.+|.+.++++|
T Consensus        89 ~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~-~~~-~~g-------------~~~~G~~aey~~v~~~~~~~lP  153 (360)
T PLN02586         89 KEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYN-SIG-HDG-------------TKNYGGYSDMIVVDQHFVLRFP  153 (360)
T ss_pred             CCCCEEEEccccCcCCCCccccCCCcccCCCcccccc-ccc-cCC-------------CcCCCccceEEEEchHHeeeCC
Confidence            99999986553 4799999999999999987542100 000 001             0012499999999999999999


Q ss_pred             CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhH-HHHHHHhcccC
Q 026087          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK-FDRVLNALAMS  242 (243)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~-~~~~~~~Ga~~  242 (243)
                      +++++++++.+.++..|+|+++......++|++|||.|+|++|++++|+|+.+|+ +|++++.++++ .+.++++|++.
T Consensus       154 ~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~~Ga~~  231 (360)
T PLN02586        154 DNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINRLGADS  231 (360)
T ss_pred             CCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHhCCCcE
Confidence            9999999999999999999987666667899999999999999999999999999 78877666655 55667899863

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=5.8e-37  Score=267.39  Aligned_cols=206  Identities=25%  Similarity=0.352  Sum_probs=181.8

Q ss_pred             EEEecCCC----CeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087           13 AVAWEPNK----PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (243)
Q Consensus        13 ~~~~~~~~----~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G   88 (243)
                      +.+.+++.    .++++++|.|.|+++||+|||++++||++|++.+.|.++...+|.++|||++|+|+++|+++++|++|
T Consensus         2 ~~~~~~g~~~~~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   81 (329)
T TIGR02822         2 WEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPGHEVVGEVAGRGADAGGFAVG   81 (329)
T ss_pred             eeeecCCcCCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCCCCCCccCCcceEEEEEEECCCCcccCCC
Confidence            45555552    48999999999999999999999999999999999876544457899999999999999999999999


Q ss_pred             CEEeeecc-cCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCC
Q 026087           89 DHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (243)
Q Consensus        89 d~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~  167 (243)
                      |+|++.+. ..|+.|.+|.+++++.|+....   .|.. .+                  |+|+||+.++.+.++++|+++
T Consensus        82 d~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~-~~------------------G~~aey~~v~~~~~~~lP~~~  139 (329)
T TIGR02822        82 DRVGIAWLRRTCGVCRYCRRGAENLCPASRY---TGWD-TD------------------GGYAEYTTVPAAFAYRLPTGY  139 (329)
T ss_pred             CEEEEcCccCcCCCChHHhCcCcccCCCccc---CCcc-cC------------------CcceeEEEeccccEEECCCCC
Confidence            99987654 4699999999999999987543   2322 22                  499999999999999999999


Q ss_pred             ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++++++.+.+++.|||+++. ..++++|++|||+|+|.+|++++|+|+.+|+ +|++++++++|+++++++|++.
T Consensus       140 ~~~~aa~l~~~~~ta~~~~~-~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~Ga~~  212 (329)
T TIGR02822       140 DDVELAPLLCAGIIGYRALL-RASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALALGAAS  212 (329)
T ss_pred             CHHHhHHHhccchHHHHHHH-hcCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHhCCce
Confidence            99999999999999999874 5789999999999999999999999999999 7999999999999999999974

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=100.00  E-value=4e-37  Score=270.17  Aligned_cols=211  Identities=30%  Similarity=0.401  Sum_probs=174.9

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCe-eeeeceEEEEEEeCCCCCcCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC-ILGHEAAGIVESVGEGVTEVQPG   88 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~-~~G~e~vG~V~~~G~~~~~~~~G   88 (243)
                      |++++++.++....+++.+.|.+.++||+|||.++|||++|++.+.+..+..+.|. ++|||++|+|+++| .++.|++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~~~~~~i~GHE~~G~V~evG-~~~~~~~G   79 (350)
T COG1063           1 MKAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGHEFVGEVVEVG-VVRGFKVG   79 (350)
T ss_pred             CceeEEEecCCccccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCCCCCCcccCccceEEEEEec-cccCCCCC
Confidence            56777777776455788877778999999999999999999999999876655555 99999999999999 77789999


Q ss_pred             CEEeeecccCCCCCccccCCCCCCCCCccCCC--CCceecCCCccccccCCcceeeecCCcceeeEEEeccceeE-EcCC
Q 026087           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGAT--GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA-KIDP  165 (243)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~--~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~lp~  165 (243)
                      |||++.+..+|++|.+|.+|.+++|++.....  ..+.. .+                  |+|+||+.+|.+..+ ++|+
T Consensus        80 drVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~-~~------------------G~~aEyv~vp~~~~~~~~pd  140 (350)
T COG1063          80 DRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGG-ID------------------GGFAEYVRVPADFNLAKLPD  140 (350)
T ss_pred             CEEEECCCcCCCCChhHhCcCcccCCCccccccccccCC-CC------------------CceEEEEEeccccCeecCCC
Confidence            99999999999999999999999999543211  11111 23                  499999999975555 4588


Q ss_pred             CCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH-hccc
Q 026087          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN-ALAM  241 (243)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~-~Ga~  241 (243)
                      ++ ..+++++..++.++|++.......+++++|+|+|+|++|++++++++.+|+.+||+++.+++|++++++ .|++
T Consensus       141 ~~-~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~  216 (350)
T COG1063         141 GI-DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD  216 (350)
T ss_pred             CC-ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe
Confidence            88 566677777889998864555656666699999999999999999999999999999999999999998 6665

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=5.6e-37  Score=268.76  Aligned_cols=212  Identities=20%  Similarity=0.306  Sum_probs=178.3

Q ss_pred             cceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhc-CCCC--CCCCCeeeeeceEEEEEEeCCCCCc
Q 026087            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDP--EGLFPCILGHEAAGIVESVGEGVTE   84 (243)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~-g~~~--~~~~p~~~G~e~vG~V~~~G~~~~~   84 (243)
                      .-++++++.++++ +++++++.| +.++||||||++++||++|++++. +...  ..++|.++|||++|+|+++  ++++
T Consensus         3 ~~~~~~~~~~~~~-~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~~   78 (343)
T PRK09880          3 VKTQSCVVAGKKD-VAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSSG   78 (343)
T ss_pred             ccceEEEEecCCc-eEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCcc
Confidence            3578999998887 999999987 689999999999999999999875 3332  2357899999999999999  6889


Q ss_pred             CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (243)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp  164 (243)
                      |++||+|++.+..+|++|.+|.+++++.|++...   +|....+              ....|+|+||++++++.++++|
T Consensus        79 ~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~~--------------~~~~G~~aey~~v~~~~~~~~P  141 (343)
T PRK09880         79 LKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRF---FGSAMYF--------------PHVDGGFTRYKVVDTAQCIPYP  141 (343)
T ss_pred             CCCCCEEEECCCCCCcCChhhcCCChhhCCCcce---eeccccc--------------CCCCCceeeeEEechHHeEECC
Confidence            9999999999999999999999999999987543   2211000              0113499999999999999999


Q ss_pred             CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++++++++ +..++.++|+++. .....+|++|||+|+|++|++++|+|+++|+++|++++++++|+++++++|++.
T Consensus       142 ~~l~~~~aa-~~~~~~~a~~al~-~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~  217 (343)
T PRK09880        142 EKADEKVMA-FAEPLAVAIHAAH-QAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADK  217 (343)
T ss_pred             CCCCHHHHH-hhcHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcE
Confidence            999987655 4456778999764 445668999999999999999999999999977999999999999999999974

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=100.00  E-value=1.6e-36  Score=268.84  Aligned_cols=232  Identities=59%  Similarity=0.967  Sum_probs=200.2

Q ss_pred             cceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCC
Q 026087            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (243)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~   87 (243)
                      .+||++++.++++.++++++|.|.+.++||+||++++++|++|++.+.|... ..+|.++|||++|+|+++|++++.|++
T Consensus         6 ~~~~a~~~~~~~~~~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~~   84 (373)
T cd08299           6 IKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV-TPFPVILGHEAAGIVESVGEGVTTVKP   84 (373)
T ss_pred             ceeEEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC-CCCCccccccceEEEEEeCCCCccCCC
Confidence            5799999999888899999999999999999999999999999999988763 357889999999999999999999999


Q ss_pred             CCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCC
Q 026087           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (243)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~  167 (243)
                      ||+|++.+..+|++|.+|.+++++.|+........|.. .++..+...+|...+++.+.|+|+||+.++.+.++++|+++
T Consensus        85 Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP~~l  163 (373)
T cd08299          85 GDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLM-QDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAA  163 (373)
T ss_pred             CCEEEECCCCCCCCChhhhCCCcccCcCcccccccccc-cCCccccccCCcccccccCCCcccceEEecccceeeCCCCC
Confidence            99999988889999999999999999875432112222 22222233334444444456799999999999999999999


Q ss_pred             ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      ++++++++.+++.++|+++....++++|++|||+|+|.+|++++++|+.+|+.+|+++++++++++.++++|++
T Consensus       164 ~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~  237 (373)
T cd08299         164 PLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGAT  237 (373)
T ss_pred             ChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc
Confidence            99999999999999999877888999999999998899999999999999986799999999999999999985

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd08230 glucose_DH Glucose dehydrogenase

Probab=100.00  E-value=1.6e-36  Score=266.94  Aligned_cols=210  Identities=26%  Similarity=0.320  Sum_probs=172.5

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC---CCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE---GLFPCILGHEAAGIVESVGEGVTEVQ   86 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~---~~~p~~~G~e~vG~V~~~G~~~~~~~   86 (243)
                      |||+++..++..++++++|.|+|+++||||||++++||++|++.+.|.++.   ..+|.++|||++|+|+++|++ ++|+
T Consensus         1 mka~~~~~~~~~l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~   79 (355)
T cd08230           1 MKAIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLS   79 (355)
T ss_pred             CceeEecCCCCCCeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCC
Confidence            578888765444999999999999999999999999999999999987532   246899999999999999999 9999


Q ss_pred             CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (243)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  166 (243)
                      +||||++.+...|++|.+|.+++++.|...... ..|....                  .|+|+||+.++++.++++|++
T Consensus        80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~-~~g~~~~------------------~G~~aey~~~~~~~~~~~P~~  140 (355)
T cd08230          80 PGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYT-ERGIKGL------------------HGFMREYFVDDPEYLVKVPPS  140 (355)
T ss_pred             CCCEEEeccccCCCcChhhhCcCcccCCCccee-ccCcCCC------------------CccceeEEEeccccEEECCCC
Confidence            999999988889999999999999999864421 1122112                  248999999999999999999


Q ss_pred             CChhhhhhcccccchhhhhhh------hcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC---ChhHHHHHHH
Q 026087          167 APLDKVCLLGCGVPTGLGAVW------NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI---DPKKFDRVLN  237 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~------~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~---~~~~~~~~~~  237 (243)
                      ++ + ++.+..++.+++.++.      .....++|++|+|+|+|++|++++|+||.+|+ +|+++++   +++|++++++
T Consensus       141 ~~-~-~a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~  217 (355)
T cd08230         141 LA-D-VGVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE  217 (355)
T ss_pred             CC-c-ceeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH
Confidence            98 3 3444445555444332      22336789999999999999999999999999 8999987   6889999999


Q ss_pred             hcccC
Q 026087          238 ALAMS  242 (243)
Q Consensus       238 ~Ga~~  242 (243)
                      +|++.
T Consensus       218 ~Ga~~  222 (355)
T cd08230         218 LGATY  222 (355)
T ss_pred             cCCEE
Confidence            99874

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=2.9e-36  Score=261.95  Aligned_cols=186  Identities=29%  Similarity=0.361  Sum_probs=167.6

Q ss_pred             eeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCC-CCCCCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DPEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (243)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~-~~~~~~p~~~G~e~vG~V~~~G~~~~~~~   86 (243)
                      |||+++.+.+.+  ++++|+|.|.|++|||||||++++||+.|..++.|. .+..++|.++|.|++|+|+++|++++.|+
T Consensus         1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~   80 (326)
T COG0604           1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFK   80 (326)
T ss_pred             CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcC
Confidence            688999987766  889999999999999999999999999999999997 33447899999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (243)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  166 (243)
                      +||||+..+. .|                                             ..|+|+||+.+|++.++++|++
T Consensus        81 ~GdrV~~~~~-~~---------------------------------------------~~G~~AEy~~v~a~~~~~~P~~  114 (326)
T COG0604          81 VGDRVAALGG-VG---------------------------------------------RDGGYAEYVVVPADWLVPLPDG  114 (326)
T ss_pred             CCCEEEEccC-CC---------------------------------------------CCCcceeEEEecHHHceeCCCC
Confidence            9999986420 00                                             1249999999999999999999


Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +|+++||++++++.|||+++....++++|++|||+|+ |++|++++|+||++|+ .++++.++++|.++++++|||.
T Consensus       115 ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~  190 (326)
T COG0604         115 LSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADH  190 (326)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCE
Confidence            9999999999999999999999899999999999986 9999999999999998 6777778888888999999975

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=2.4e-35  Score=259.88  Aligned_cols=220  Identities=25%  Similarity=0.263  Sum_probs=186.0

Q ss_pred             cccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcC
Q 026087            6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV   85 (243)
Q Consensus         6 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~   85 (243)
                      ....++|+++.+++.++++++++.|.|+++||+|||.++++|++|++.+.|.+....+|.++|||++|+|+++|+++++|
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~Vv~vG~~v~~~   85 (357)
T PLN02514          6 AEKKTTGWAARDPSGHLSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKF   85 (357)
T ss_pred             CCceEEEEEEecCCCCceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCcCCCCccCCceeeEEEEEECCCcccc
Confidence            34558999999999989999999999999999999999999999999998876544578999999999999999999999


Q ss_pred             CCCCEEeeeccc-CCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087           86 QPGDHVIPCYQA-ECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (243)
Q Consensus        86 ~~Gd~V~~~~~~-~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp  164 (243)
                      ++||+|++.+.. +|++|.+|.++..+.|....+....++  .+|             ....|+|+||+.++...++++|
T Consensus        86 ~~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~--~~g-------------~~~~G~~aey~~v~~~~~~~iP  150 (357)
T PLN02514         86 TVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVY--TDG-------------KPTQGGFASAMVVDQKFVVKIP  150 (357)
T ss_pred             cCCCEEEEcCccccCCCChhHhCCCcccCCCccccccccc--cCC-------------ccCCCccccEEEEchHHeEECC
Confidence            999999866533 699999999999999987532210000  011             1123599999999999999999


Q ss_pred             CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HHhccc
Q 026087          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV-LNALAM  241 (243)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~-~~~Ga~  241 (243)
                      +++++++++.+.+++.|||+++......++|++|+|+|+|++|++++|+|+.+|+ ++++++.++++.+.+ +++|++
T Consensus       151 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~~~Ga~  227 (357)
T PLN02514        151 EGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALEHLGAD  227 (357)
T ss_pred             CCCCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhcCCc
Confidence            9999999999999999999987666667899999999889999999999999999 788887777766544 568886

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=1.4e-35  Score=262.81  Aligned_cols=215  Identities=27%  Similarity=0.296  Sum_probs=176.8

Q ss_pred             EEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCCEE
Q 026087           12 AAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV   91 (243)
Q Consensus        12 a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~V   91 (243)
                      ++++.+..+.+++.+++.|.|+++||+|||.+++||++|++++.|.+....+|.++|||++|+|+++|+++++|++||+|
T Consensus         9 ~~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~~~~p~i~GhE~aG~Vv~vG~~v~~~~vGdrV   88 (375)
T PLN02178          9 GWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRV   88 (375)
T ss_pred             EEEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCCCCCCcccCceeeEEEEEECCCCCccCCCCEE
Confidence            44455555568889999999999999999999999999999998876434568999999999999999999999999999


Q ss_pred             eeeccc-CCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCChh
Q 026087           92 IPCYQA-ECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLD  170 (243)
Q Consensus        92 ~~~~~~-~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~  170 (243)
                      ++.+.. .|++|.+|.+|+++.|++..... .+.. ..|             ....|+|+||+.+|++.++++|++++++
T Consensus        89 ~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~-~~~~-~~g-------------~~~~G~~aey~~v~~~~~~~lP~~ls~~  153 (375)
T PLN02178         89 GVGVIIGSCQSCESCNQDLENYCPKVVFTY-NSRS-SDG-------------TRNQGGYSDVIVVDHRFVLSIPDGLPSD  153 (375)
T ss_pred             EEcCccCCCCCChhHhCcchhcCCCccccc-cccc-cCC-------------CcCCCccccEEEEchHHeEECCCCCCHH
Confidence            876654 69999999999999999754210 0000 001             0012499999999999999999999999


Q ss_pred             hhhhcccccchhhhhhhhcCC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh-HHHHHHHhcccC
Q 026087          171 KVCLLGCGVPTGLGAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK-KFDRVLNALAMS  242 (243)
Q Consensus       171 ~aa~l~~~~~ta~~~~~~~~~-~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~-~~~~~~~~Ga~~  242 (243)
                      +++.+.++..|+|+++..... .++|++|+|.|+|++|++++|+|+.+|+ +|++++.+++ +.++++++|++.
T Consensus       154 ~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~lGa~~  226 (375)
T PLN02178        154 SGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAIDRLGADS  226 (375)
T ss_pred             HcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHHhCCCcE
Confidence            999999999999987654433 4689999999999999999999999999 7888877654 478888999864

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=100.00  E-value=6.7e-35  Score=257.69  Aligned_cols=231  Identities=59%  Similarity=1.029  Sum_probs=206.2

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd   89 (243)
                      +||+++.+++.++++++++.|.+++++|+||+.++++|++|++.+.+... ..+|.++|||++|+|+++|++++.+++||
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~-~~~~~i~g~e~~G~V~~vG~~v~~~~~Gd   79 (365)
T cd05279           1 CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP-TPLPVILGHEGAGIVESIGPGVTTLKPGD   79 (365)
T ss_pred             CceeEEecCCCCcEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCCCC
Confidence            47899998887799999999999999999999999999999999988754 34678999999999999999999999999


Q ss_pred             EEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCCh
Q 026087           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (243)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~  169 (243)
                      +|+..+...|++|.+|..+++++|.........|.. .+|..++.-+|...+++++.|+|++|+.++.+.++++|+++++
T Consensus        80 ~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~~  158 (365)
T cd05279          80 KVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLM-SDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPL  158 (365)
T ss_pred             EEEEcCCCCCCCChhhcCCCcccCCCcccccccccc-cCCcceeeccCCccccccccccccceEEecCCceEECCCCCCH
Confidence            999988889999999999999999887765444544 4566666667777777778889999999999999999999999


Q ss_pred             hhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++++.+.+++.++|+++.....+++|++|||+|+|.+|++++++|+.+|+..|++++++++|.+.++++|++.
T Consensus       159 ~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~  231 (365)
T cd05279         159 EKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATE  231 (365)
T ss_pred             HHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCe
Confidence            9999999999999998888889999999999988999999999999999966888888999999999999853

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=100.00  E-value=4.4e-35  Score=257.36  Aligned_cols=205  Identities=32%  Similarity=0.471  Sum_probs=180.0

Q ss_pred             EEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCC-CCCCCCCeeeeeceEEEEEEeCCCCCcCCCCCEE
Q 026087           13 AVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV   91 (243)
Q Consensus        13 ~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~-~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~V   91 (243)
                      +++.+++.+++++++|.|.++++||+|||+++++|++|++.+.+. .+...+|.++|||++|+|+++|++++.+ +||+|
T Consensus         2 ~~~~~~g~~~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV   80 (349)
T TIGR03201         2 WMMTEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGKAV   80 (349)
T ss_pred             ceEecCCCCceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCCEE
Confidence            466777777899999999999999999999999999999987443 3333678999999999999999999887 99999


Q ss_pred             eeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCC------
Q 026087           92 IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP------  165 (243)
Q Consensus        92 ~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~------  165 (243)
                      ++.+..+|++|.+|.+++++.|.....   .|.. .+                  |+|+||+.++.+.++++|+      
T Consensus        81 ~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~-~~------------------G~~ae~~~v~~~~~~~ip~~~~~~~  138 (349)
T TIGR03201        81 IVPAVIPCGECELCKTGRGTICRAQKM---PGND-MQ------------------GGFASHIVVPAKGLCVVDEARLAAA  138 (349)
T ss_pred             EECCCCCCCCChhhhCcCcccCCCCCc---cCcC-CC------------------CcccceEEechHHeEECCccccccc
Confidence            999999999999999999999976432   2221 12                  4999999999999999999      


Q ss_pred             CCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++++++++.+.+++.++|+++. ...+++|++|+|+|+|++|++++|+|+.+|+ +|++++++++|+++++++|++.
T Consensus       139 ~~~~~~~a~~~~~~~ta~~a~~-~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~  213 (349)
T TIGR03201       139 GLPLEHVSVVADAVTTPYQAAV-QAGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGFGADL  213 (349)
T ss_pred             CCCHHHhhhhcchHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCce
Confidence            8999999988889999999764 5778999999999999999999999999999 8999999999999999999864

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=7e-34  Score=249.34  Aligned_cols=207  Identities=28%  Similarity=0.417  Sum_probs=176.5

Q ss_pred             eeEEEEecCCCCeEEEeeccCCC-CCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~-~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G   88 (243)
                      |||+++.+++. +++++++.|.| .++||+|||.++++|++|+..+..... ..+|.++|||++|+|+++|+++++|++|
T Consensus         1 Mka~~~~~~~~-~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~vG   78 (347)
T PRK10309          1 MKSVVNDTDGI-VRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNGA-HYYPITLGHEFSGYVEAVGSGVDDLHPG   78 (347)
T ss_pred             CceEEEeCCCc-eEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCCC-CCCCcccccceEEEEEEeCCCCCCCCCC
Confidence            68999998875 99999999997 599999999999999999875432211 1357899999999999999999999999


Q ss_pred             CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCC
Q 026087           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (243)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~  168 (243)
                      |+|++.+..+|+.|.+|..|+.+.|.....   .|..                   ..|+|++|+.++.+.++++|++++
T Consensus        79 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~-------------------~~G~~aey~~v~~~~~~~lP~~~s  136 (347)
T PRK10309         79 DAVACVPLLPCFTCPECLRGFYSLCAKYDF---IGSR-------------------RDGGNAEYIVVKRKNLFALPTDMP  136 (347)
T ss_pred             CEEEECCCcCCCCCcchhCcCcccCCCcce---eccC-------------------CCCccceeEEeehHHeEECcCCCC
Confidence            999999999999999999999999976432   2211                   134999999999999999999999


Q ss_pred             hhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++++.+. .+.++++++ ....+++|++|||+|+|++|++++|+|+.+|++.|++++++++|+++++++|++.
T Consensus       137 ~~~aa~~~-~~~~~~~~~-~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~  208 (347)
T PRK10309        137 IEDGAFIE-PITVGLHAF-HLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQ  208 (347)
T ss_pred             HHHhhhhh-HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCce
Confidence            99988763 345577763 5677899999999999999999999999999966899999999999999999863

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=100.00  E-value=6.6e-34  Score=249.24  Aligned_cols=203  Identities=17%  Similarity=0.166  Sum_probs=166.7

Q ss_pred             ceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC----CCCCeeeeeceEEEEEEeCCCCCc
Q 026087            9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE----GLFPCILGHEAAGIVESVGEGVTE   84 (243)
Q Consensus         9 ~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~----~~~p~~~G~e~vG~V~~~G~~~~~   84 (243)
                      -.|++++.++++ ++++|++.|. +++||+|||+++|||++|++++.|.+..    ..+|.++|||++|+|+++|.+  +
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--~   77 (341)
T cd08237           2 INQVYRLVRPKF-FEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--T   77 (341)
T ss_pred             cccceEEeccce-EEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--c
Confidence            357899999886 9999999995 9999999999999999999999987532    257999999999999998764  7


Q ss_pred             CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (243)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp  164 (243)
                      |++||||.+.+...|+.| +|  +..+.|.....   .|.. .+                  |+|+||+++|++.++++|
T Consensus        78 ~~vGdrV~~~~~~~~~~~-~~--~~~~~c~~~~~---~g~~-~~------------------G~~aey~~v~~~~~~~vP  132 (341)
T cd08237          78 YKVGTKVVMVPNTPVEKD-EI--IPENYLPSSRF---RSSG-YD------------------GFMQDYVFLPPDRLVKLP  132 (341)
T ss_pred             cCCCCEEEECCCCCchhc-cc--chhccCCCcce---eEec-CC------------------CceEEEEEEchHHeEECC
Confidence            999999999888778744 45  34566765432   1221 23                  389999999999999999


Q ss_pred             CCCChhhhhhcccccchhhhhhhh--cCCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCEEEEEcCChhHHHHHHHhccc
Q 026087          165 PQAPLDKVCLLGCGVPTGLGAVWN--TAKVEPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~--~~~~~~g~~vlV~G~g~~G~~a~~~a~~-~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +++++++|+++ .++.++|+++..  ...+++|++|||+|+|++|++++|+++. +|..+|++++++++|+++++++|++
T Consensus       133 ~~l~~~~aa~~-~~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~  211 (341)
T cd08237         133 DNVDPEVAAFT-ELVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADET  211 (341)
T ss_pred             CCCChHHhhhh-chHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCce
Confidence            99999887755 477788887643  3457899999999999999999999996 6655899999999999999887664

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=100.00  E-value=1.7e-33  Score=247.12  Aligned_cols=212  Identities=26%  Similarity=0.358  Sum_probs=186.3

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd   89 (243)
                      |||+++.+++. +++++.+.|.+.++||+|||+++++|++|++.+.+.+...+.|.++|||++|+|+++|+++++|++||
T Consensus         1 mka~~~~~~~~-~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd   79 (351)
T cd08285           1 MKAFAMLGIGK-VGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGMILGHEAVGVVEEVGSEVKDFKPGD   79 (351)
T ss_pred             CceEEEccCCc-cEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCCCCCCcccCcceEEEEEEecCCcCccCCCC
Confidence            78999999886 89999999999999999999999999999999888765446689999999999999999999999999


Q ss_pred             EEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc--eeEEcCCCC
Q 026087           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQA  167 (243)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~lp~~~  167 (243)
                      +|+..+..+|+.|..|..|+.+.|.....+..++.                   ...|+|++|+.++.+  .++++|+++
T Consensus        80 ~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~-------------------~~~g~~~~y~~v~~~~~~~~~lP~~~  140 (351)
T cd08285          80 RVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSN-------------------FKDGVFAEYFHVNDADANLAPLPDGL  140 (351)
T ss_pred             EEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccC-------------------CCCcceeEEEEcchhhCceEECCCCC
Confidence            99998888999999999999999986532111111                   113489999999974  899999999


Q ss_pred             ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++++++.++..+.|+|+++ ....+++|++|||+|+|.+|++++|+|+.+|+..+++++++++|.++++++|++.
T Consensus       141 ~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~  214 (351)
T cd08285         141 TDEQAVMLPDMMSTGFHGA-ELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATD  214 (351)
T ss_pred             CHHHhhhhccchhhHHHHH-HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCce
Confidence            9999999988999999974 7778999999999988999999999999999977999999999999999999864

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=100.00  E-value=1.6e-33  Score=248.97  Aligned_cols=232  Identities=41%  Similarity=0.730  Sum_probs=192.1

Q ss_pred             cceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCC
Q 026087            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (243)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~   87 (243)
                      |+|||+++.+++.++++++.+.|.+.++||+|||.++++|++|+..+.+.++ ..+|.++|||++|+|+++|+++.+|++
T Consensus         1 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~~   79 (365)
T cd08278           1 MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP-TPLPAVLGHEGAGVVEAVGSAVTGLKP   79 (365)
T ss_pred             CccEEeeeccCCCcceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCC
Confidence            4789999999777799999999999999999999999999999999988765 346789999999999999999999999


Q ss_pred             CCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccC-Ccc-eeeecCCcceeeEEEeccceeEEcCC
Q 026087           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSIN-GKP-IYHFMGTSTFSQYTVVHDVSVAKIDP  165 (243)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~-~~~-~~~~~~~g~~~~~~~~~~~~~~~lp~  165 (243)
                      ||+|++.+. .|++|.+|..++.++|.........|.. .+|..-+... |.+ ..++...|+|++|+.++.+.++++|+
T Consensus        80 Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP~  157 (365)
T cd08278          80 GDHVVLSFA-SCGECANCLSGHPAYCENFFPLNFSGRR-PDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDK  157 (365)
T ss_pred             CCEEEEccc-CCCCChHHhCCCcccccCcccccccccc-cCCcccccccCCcccccccccccceeeEEEecchhEEECCC
Confidence            999998764 8999999999999999865432222211 0110000000 000 00122346999999999999999999


Q ss_pred             CCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++++++++.+.+++.||+.++.....++++++|||+|+|.+|++++|+|+++|++++++++++++|.++++++|++.
T Consensus       158 ~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~  234 (365)
T cd08278         158 DVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATH  234 (365)
T ss_pred             CCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcE
Confidence            99999999999999999998888888999999999988999999999999999977999999999999999998863

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=100.00  E-value=1.6e-33  Score=248.27  Aligned_cols=217  Identities=29%  Similarity=0.444  Sum_probs=188.5

Q ss_pred             eEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCc------
Q 026087           11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE------   84 (243)
Q Consensus        11 ~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~------   84 (243)
                      ||+++.++++.+++++++.|.|+++||+|||.++++|++|+....|.++...+|.++|||++|+|+++|++++.      
T Consensus         2 ka~~~~~~~~~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~~~~   81 (361)
T cd08231           2 RAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGHEGVGRVVALGGGVTTDVAGEP   81 (361)
T ss_pred             eEEEEcCCCCCCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCCCCCCcccccCCceEEEEeCCCccccccCCc
Confidence            78999998867999999999999999999999999999999999887653467889999999999999999986      


Q ss_pred             CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc-eeEEc
Q 026087           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV-SVAKI  163 (243)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~l  163 (243)
                      |++||+|+..+..+|+.|.+|..+..+.|.....   +|....++            .....|+|++|+.++.+ .++++
T Consensus        82 ~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~---~~~~~~~~------------~~~~~g~~a~~~~v~~~~~~~~l  146 (361)
T cd08231          82 LKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKK---YGHEASCD------------DPHLSGGYAEHIYLPPGTAIVRV  146 (361)
T ss_pred             cCCCCEEEEcccCCCCCChhHhCcCccccccchh---cccccccc------------CCCCCcccceEEEecCCCceEEC
Confidence            9999999999988999999999999999987643   22221110            00113599999999986 79999


Q ss_pred             CCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      |++++..+++++++++.|||+++......++|++|||+|+|.+|++++++|+.+|+++|+++++++++.++++++|++.
T Consensus       147 P~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~  225 (361)
T cd08231         147 PDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADA  225 (361)
T ss_pred             CCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCe
Confidence            9999998898888999999998877666779999999998999999999999999978999999999999999999863

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=2.1e-33  Score=244.96  Aligned_cols=209  Identities=30%  Similarity=0.489  Sum_probs=186.0

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd   89 (243)
                      |||+++.+++..+++++++.|.++++||+||+.++++|++|+..+.|..+..++|.++|||++|+|+++|+++.+|++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd   80 (333)
T cd08296           1 YKAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHEVVGRIDAVGEGVSRWKVGD   80 (333)
T ss_pred             CeEEEEccCCCCceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCCCCCCcccCcceeEEEEEECCCCccCCCCC
Confidence            78999999866699999999999999999999999999999999988664445688999999999999999999999999


Q ss_pred             EEeeec-ccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCC
Q 026087           90 HVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (243)
Q Consensus        90 ~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~  168 (243)
                      +|++.+ ...|++|.+|..|+++.|.+...   .|.. .+                  |+|++|+.++...++++|++++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~---~~~~-~~------------------g~~a~~~~v~~~~~~~lp~~~~  138 (333)
T cd08296          81 RVGVGWHGGHCGTCDACRRGDFVHCENGKV---TGVT-RD------------------GGYAEYMLAPAEALARIPDDLD  138 (333)
T ss_pred             EEEeccccCCCCCChhhhCcCcccCCCCCc---cCcc-cC------------------CcceeEEEEchhheEeCCCCCC
Confidence            998754 46799999999999999997653   2221 12                  3899999999999999999999


Q ss_pred             hhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +.+++.+.++..++|+++.. ..+.++++|||+|+|.+|++++++|+++|+ +|+++++++++++.++++|++.
T Consensus       139 ~~~aa~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~  210 (333)
T cd08296         139 AAEAAPLLCAGVTTFNALRN-SGAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARKLGAHH  210 (333)
T ss_pred             HHHhhhhhhhhHHHHHHHHh-cCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcCCcE
Confidence            99999999999999998754 489999999999999999999999999999 8999999999999999999863

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PRK10083 putative oxidoreductase; Provisional

Probab=100.00  E-value=2.1e-33  Score=245.15  Aligned_cols=208  Identities=27%  Similarity=0.439  Sum_probs=182.7

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd   89 (243)
                      |||+++.+++. +++++++.|.|+++|++||+.++++|++|++.+.+..+..++|.++|||++|+|+++|++++.|++||
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd   79 (339)
T PRK10083          1 MKSIVIEKPNS-LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVDAARIGE   79 (339)
T ss_pred             CeEEEEecCCe-eEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCcCCCCcccccceEEEEEEECCCCccCCCCC
Confidence            68999998875 99999999999999999999999999999999988765446789999999999999999999999999


Q ss_pred             EEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCCh
Q 026087           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (243)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~  169 (243)
                      +|++.+...|+.|.+|.++++++|.....   .+..                   ..|+|++|+.++...++++|+++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------------------~~g~~~~~~~~~~~~~~~ip~~~~~  137 (339)
T PRK10083         80 RVAVDPVISCGHCYPCSIGKPNVCTSLVV---LGVH-------------------RDGGFSEYAVVPAKNAHRIPDAIAD  137 (339)
T ss_pred             EEEEccccCCCCCccccCcCcccCCCCce---EEEc-------------------cCCcceeeEEechHHeEECcCCCCH
Confidence            99999999999999999999999975432   1211                   1248999999999999999999999


Q ss_pred             hhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~-~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++++ +...+.++|+ +....++++|++|+|+|+|.+|++++|+|+. +|++.+++++++++|.++++++|++.
T Consensus       138 ~~a~-~~~~~~~a~~-~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~  209 (339)
T PRK10083        138 QYAV-MVEPFTIAAN-VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADW  209 (339)
T ss_pred             HHHh-hhchHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcE
Confidence            8876 4456777885 5577789999999999999999999999996 69977888999999999999999864

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=100.00  E-value=3.7e-33  Score=245.03  Aligned_cols=209  Identities=31%  Similarity=0.486  Sum_probs=181.3

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCC---C--------CCCCCeeeeeceEEEEEEe
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---P--------EGLFPCILGHEAAGIVESV   78 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~---~--------~~~~p~~~G~e~vG~V~~~   78 (243)
                      |||+++.++++ +++++++.|.|.++||+||+.++++|++|+..+.+..   +        ...+|.++|||++|+|+++
T Consensus         1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~v   79 (351)
T cd08233           1 MKAARYHGRKD-IRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEV   79 (351)
T ss_pred             CceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEe
Confidence            68999988775 9999999999999999999999999999988765421   1        1136889999999999999


Q ss_pred             CCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc
Q 026087           79 GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV  158 (243)
Q Consensus        79 G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  158 (243)
                      |++++.|++||+|...+...|++|.+|.++..+.|.....   .|...                  ..|+|++|+.++..
T Consensus        80 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------------------~~g~~a~~~~~~~~  138 (351)
T cd08233          80 GSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGF---IGLGG------------------GGGGFAEYVVVPAY  138 (351)
T ss_pred             CCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCce---eccCC------------------CCCceeeEEEechH
Confidence            9999999999999999888999999999999999985431   12110                  12489999999999


Q ss_pred             eeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087          159 SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       159 ~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      .++++|+++++++++.+ ....+||+++ ...++++|++|||+|+|.+|++++|+|+.+|+++|+++++++++.++++++
T Consensus       139 ~~~~lP~~~~~~~aa~~-~~~~ta~~~l-~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~  216 (351)
T cd08233         139 HVHKLPDNVPLEEAALV-EPLAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL  216 (351)
T ss_pred             HeEECcCCCCHHHhhhc-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            99999999999988776 5778999977 778899999999999999999999999999997899999999999999999


Q ss_pred             cccC
Q 026087          239 LAMS  242 (243)
Q Consensus       239 Ga~~  242 (243)
                      |++.
T Consensus       217 ga~~  220 (351)
T cd08233         217 GATI  220 (351)
T ss_pred             CCCE
Confidence            9864

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=100.00  E-value=2.1e-32  Score=239.36  Aligned_cols=212  Identities=31%  Similarity=0.475  Sum_probs=187.5

Q ss_pred             eeEEEEecCCCCeEEEeeccCCC-CCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~-~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G   88 (243)
                      ||++++.+++. +++.+.+.|.| +++||+||+.++++|+.|+..+.+.++..++|.++|||++|+|+++|+++++|++|
T Consensus         1 ~ka~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G   79 (347)
T cd05278           1 MKALVYLGPGK-IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHEFVGEVVEVGSDVKRLKPG   79 (347)
T ss_pred             CceEEEecCCc-eEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCCCCCCceeccceEEEEEEECCCccccCCC
Confidence            57999988876 89999999999 99999999999999999999998887656678999999999999999999999999


Q ss_pred             CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc--eeEEcCCC
Q 026087           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ  166 (243)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~lp~~  166 (243)
                      |+|+..+..+|+.|.+|.+++..+|+........|.                   ...|+|++|++++.+  .++++|++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~g~~~~~~~v~~~~~~~~~lP~~  140 (347)
T cd05278          80 DRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGN-------------------RIDGGQAEYVRVPYADMNLAKIPDG  140 (347)
T ss_pred             CEEEecCCCCCCCChhHhCcCcccCcCCCccccccc-------------------CCCCeeeEEEEecchhCeEEECCCC
Confidence            999999999999999999999999987553321111                   123499999999987  89999999


Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++++++.+++++.|||+++ ...+++++++|||.|+|.+|.+++|+|+.+|+.+++++++++++.++++++|++.
T Consensus       141 ~~~~~aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~  215 (347)
T cd05278         141 LPDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATD  215 (347)
T ss_pred             CCHHHHhhhcchhhheeehh-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcE
Confidence            99999999999999999986 6778999999999888999999999999999657889988899999999988753

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=100.00  E-value=3.7e-32  Score=241.92  Aligned_cols=224  Identities=31%  Similarity=0.405  Sum_probs=185.8

Q ss_pred             eeEEEEecCCCCeEEEeeccCCC-CCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~-~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G   88 (243)
                      |||+++.+++. +++++++.|.| .+++|+||+.++++|++|+..+.|.++..++|.++|||++|+|+++|+++++|++|
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   79 (386)
T cd08283           1 MKALVWHGKGD-VRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKKGDILGHEFMGVVEEVGPEVRNLKVG   79 (386)
T ss_pred             CeeEEEecCCC-ceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCCCCCCccccccceEEEEEeCCCCCCCCCC
Confidence            68999988755 99999999998 49999999999999999999999987655678999999999999999999999999


Q ss_pred             CEEeeecccCCCCCccccCCCCCCCCCccCCC-CCceecCCCccccccCCc-ceeeecCCcceeeEEEeccc--eeEEcC
Q 026087           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGAT-GAGVMMNDRKSRFSINGK-PIYHFMGTSTFSQYTVVHDV--SVAKID  164 (243)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~-~~G~~~~~g~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~--~~~~lp  164 (243)
                      |+|+..+...|++|.+|..+..+.|++..... ..+   .+|.......|- ... ....|+|++|+.++.+  .++++|
T Consensus        80 d~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~g~~~~~~~v~~~~~~~~~lp  155 (386)
T cd08283          80 DRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAK---LYGHAGAGIFGYSHLT-GGYAGGQAEYVRVPFADVGPFKIP  155 (386)
T ss_pred             CEEEEcCcCCCCCChhhcCCCcccCCCccccccccc---cccccccccccccccc-CCCCCeeEEEEEcccccCeEEECC
Confidence            99999888899999999999999998654321 000   000000000000 000 0123599999999987  899999


Q ss_pred             CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhc
Q 026087          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNAL  239 (243)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~G  239 (243)
                      +++++++++.++....|||+++ ....+.+|++|||+|+|.+|.+++++|+++|+.+|+++++++++.+++++++
T Consensus       156 ~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~  229 (386)
T cd08283         156 DDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL  229 (386)
T ss_pred             CCCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC
Confidence            9999999999999999999987 7788999999999988999999999999999856999999999999998873

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=100.00  E-value=5.2e-32  Score=238.96  Aligned_cols=229  Identities=47%  Similarity=0.811  Sum_probs=190.7

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd   89 (243)
                      |||+++.+++.++++++++.|.+.++||+||+.++++|+.|+..+.+.++ .++|.++|+|++|+|+++|+++..|++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd   79 (363)
T cd08279           1 MRAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLP-APLPAVLGHEGAGVVEEVGPGVTGVKPGD   79 (363)
T ss_pred             CeEEEEecCCCCceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCC-CCCCccccccceEEEEEeCCCccccCCCC
Confidence            68999999887799999999999999999999999999999999988765 35678999999999999999999999999


Q ss_pred             EEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCCh
Q 026087           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (243)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~  169 (243)
                      +|+..+...|++|.+|.+++.++|....... +|.. .++..++...|...+.....|+|++|+.++.+.++++|+++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~  157 (363)
T cd08279          80 HVVLSWIPACGTCRYCSRGQPNLCDLGAGIL-GGQL-PDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPL  157 (363)
T ss_pred             EEEECCCCCCCCChhhcCCCcccCccccccc-cccc-CCCcccccccCccccccccCccceeeEEeccccEEECCCCCCh
Confidence            9999999999999999999999998654210 0000 0000000000111111233469999999999999999999999


Q ss_pred             hhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      ++++.+.++..+||.++.....+.++++|||+|+|.+|.+++++|+.+|+++|+++++++++.+.++++|++
T Consensus       158 ~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~  229 (363)
T cd08279         158 DRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGAT  229 (363)
T ss_pred             HHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCe
Confidence            999999999999999888888899999999998899999999999999995599999999999999888874

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=100.00  E-value=6e-32  Score=235.96  Aligned_cols=210  Identities=31%  Similarity=0.456  Sum_probs=187.6

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC---CCCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTEVQ   86 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~---~~~~p~~~G~e~vG~V~~~G~~~~~~~   86 (243)
                      |||+++.+++.++++.+.+.|.+.+++++||+.++++|++|+....+.+.   ...+|.++|||++|+|+++|+++..|+
T Consensus         1 ~ka~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~   80 (340)
T cd05284           1 MKAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLK   80 (340)
T ss_pred             CeeeEeccCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCc
Confidence            68999998877799999999999999999999999999999999888764   235688999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (243)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  166 (243)
                      +||+|+..+...|+.|..|..|..++|.+...   .|+. .+                  |+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~v~~~~~~~~P~~  138 (340)
T cd05284          81 EGDPVVVHPPWGCGTCRYCRRGEENYCENARF---PGIG-TD------------------GGFAEYLLVPSRRLVKLPRG  138 (340)
T ss_pred             CCCEEEEcCCCCCCCChHHhCcCcccCCCCcc---cCcc-CC------------------CcceeeEEecHHHeEECCCC
Confidence            99999999888999999999999999998764   2332 23                  48999999999999999999


Q ss_pred             CChhhhhhcccccchhhhhhhhc-CCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHHhcccC
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~-~~~~~g~~vlV~G~g~~G~~a~~~a~~~G-~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++++++.+.+.+.|||+++... ..+.++++|||+|+|.+|++++++|+.+| . +|+++++++++.+.++++|++.
T Consensus       139 ls~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~-~v~~~~~~~~~~~~~~~~g~~~  215 (340)
T cd05284         139 LDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPA-TVIAVDRSEEALKLAERLGADH  215 (340)
T ss_pred             CCHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHhCCcE
Confidence            99999999999999999987665 46888999999999889999999999999 6 8999989999999999998753

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=6.5e-32  Score=237.03  Aligned_cols=209  Identities=26%  Similarity=0.419  Sum_probs=182.2

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC---------CCCCCeeeeeceEEEEEEeCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---------EGLFPCILGHEAAGIVESVGE   80 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~---------~~~~p~~~G~e~vG~V~~~G~   80 (243)
                      |||+++.+++. +++++.+.|++.+++|+||+.++++|+.|+..+.|...         ..++|.++|||++|+|+++|+
T Consensus         1 mka~~~~~~~~-~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~   79 (350)
T cd08256           1 MRAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGE   79 (350)
T ss_pred             CeeEEEecCCc-eEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCC
Confidence            68999998876 99999999999999999999999999999998887531         114677899999999999999


Q ss_pred             CCC--cCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc
Q 026087           81 GVT--EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV  158 (243)
Q Consensus        81 ~~~--~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  158 (243)
                      +++  .|++||+|+..+..+|++|.+|..+..+.|.....   +|+..                 ...|+|++|+.++.+
T Consensus        80 ~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~-----------------~~~g~~~~~~~~~~~  139 (350)
T cd08256          80 GAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDL---YGFQN-----------------NVNGGMAEYMRFPKE  139 (350)
T ss_pred             CcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccc---eeecc-----------------CCCCcceeeEEcccc
Confidence            999  89999999999999999999999999999976432   33310                 012489999999987


Q ss_pred             -eeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          159 -SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       159 -~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                       .++++|+++++.+++.+ .++.++|.++ ...++++|++|+|.|+|.+|.+++++|+++|+..+++++++++|.+++.+
T Consensus       140 ~~~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~  217 (350)
T cd08256         140 AIVHKVPDDIPPEDAILI-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARK  217 (350)
T ss_pred             cceEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHH
Confidence             67899999999998888 7888999986 77889999999997789999999999999998678889999999999999


Q ss_pred             hccc
Q 026087          238 ALAM  241 (243)
Q Consensus       238 ~Ga~  241 (243)
                      +|++
T Consensus       218 ~g~~  221 (350)
T cd08256         218 FGAD  221 (350)
T ss_pred             cCCc
Confidence            9875

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.7e-31  Score=233.70  Aligned_cols=210  Identities=33%  Similarity=0.573  Sum_probs=188.2

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd   89 (243)
                      |||+++.+++.++++++.+.|.+.+++|+||+.++++|+.|+..+.|..+...+|.++|+|++|+|+.+|+++..|++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~~~~~~~Gd   80 (345)
T cd08260           1 MRAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHEFAGVVVEVGEDVSRWRVGD   80 (345)
T ss_pred             CeeEEEecCCCCcEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCCCCCCeeeccceeEEEEEECCCCccCCCCC
Confidence            78999998887799999999999999999999999999999999988765446688999999999999999999999999


Q ss_pred             EEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc--eeEEcCCCC
Q 026087           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQA  167 (243)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~lp~~~  167 (243)
                      +|+..+...|++|.+|..|+.++|++...   .|+. .+                  |+|++|+.++..  .++++|+++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~v~~~~~~~~~iP~~~  138 (345)
T cd08260          81 RVTVPFVLGCGTCPYCRAGDSNVCEHQVQ---PGFT-HP------------------GSFAEYVAVPRADVNLVRLPDDV  138 (345)
T ss_pred             EEEECCCCCCCCCccccCcCcccCCCCcc---cccC-CC------------------CcceeEEEcccccCceEECCCCC
Confidence            99887778899999999999999998532   2221 12                  389999999975  899999999


Q ss_pred             ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++++++.+.+...|||+++....++.++++|+|+|+|.+|++++++|+.+|+ +|+++++++++.+.++++|++.
T Consensus       139 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~  212 (345)
T cd08260         139 DFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVA  212 (345)
T ss_pred             CHHHhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHhCCCE
Confidence            9999999998999999988778889999999999999999999999999999 8999999999999999999853

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-31  Score=233.61  Aligned_cols=205  Identities=32%  Similarity=0.474  Sum_probs=184.4

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd   89 (243)
                      |||+++.++++++++++.|.|.++++|++||++++++|+.|+....+..+..++|.++|||++|+|+.+|++++.+++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~   80 (334)
T PRK13771          1 MKAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHEVVGTVEEVGENVKGFKPGD   80 (334)
T ss_pred             CeeEEEcCCCCCcEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCCCCCCeeccccceEEEEEeCCCCccCCCCC
Confidence            68999999988899999999999999999999999999999999888766556788999999999999999998899999


Q ss_pred             EEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCCh
Q 026087           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (243)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~  169 (243)
                      +|++.+..+|++|++|..+..+.|+....   +|.. .+                  |+|++|+.++.+.++++|+++++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~~~~~~~~~lp~~~~~  138 (334)
T PRK13771         81 RVASLLYAPDGTCEYCRSGEEAYCKNRLG---YGEE-LD------------------GFFAEYAKVKVTSLVKVPPNVSD  138 (334)
T ss_pred             EEEECCCCCCcCChhhcCCCcccCccccc---cccc-cC------------------ceeeeeeecchhceEECCCCCCH
Confidence            99998888999999999999999987543   2221 22                  38999999999999999999999


Q ss_pred             hhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      .+++.+.+++.++|+++... .+.++++|+|+|+ |.+|++++++++.+|+ +++++++++++.+.++++
T Consensus       139 ~~~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~  206 (334)
T PRK13771        139 EGAVIVPCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKIVSKY  206 (334)
T ss_pred             HHhhcccchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHH
Confidence            99999999999999987665 8899999999998 9999999999999999 899998999888888766

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=100.00  E-value=1e-31  Score=239.42  Aligned_cols=214  Identities=21%  Similarity=0.206  Sum_probs=182.9

Q ss_pred             cccceeEEEEec--CC---CCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC----------CCCCCeeeeec
Q 026087            6 QVITCKAAVAWE--PN---KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP----------EGLFPCILGHE   70 (243)
Q Consensus         6 ~~~~~~a~~~~~--~~---~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~----------~~~~p~~~G~e   70 (243)
                      .|.+|||+++..  ++   +.+++++++.|.++++||+||+.++++|++|++.+.+...          ....+.++|||
T Consensus         9 ~~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e   88 (393)
T cd08246           9 VPEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSD   88 (393)
T ss_pred             CchhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccc
Confidence            456899999863  22   2378999999999999999999999999999998876521          01123589999


Q ss_pred             eEEEEEEeCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCccee
Q 026087           71 AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFS  150 (243)
Q Consensus        71 ~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~  150 (243)
                      ++|+|+++|++++.|++||+|++.+...|++|..|..+..++|.....   +|+...                  .|+|+
T Consensus        89 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~~------------------~g~~a  147 (393)
T cd08246          89 ASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRI---WGYETN------------------YGSFA  147 (393)
T ss_pred             eEEEEEEeCCCCCcCCCCCEEEEeccccccCccccccccccccccccc---ccccCC------------------CCcce
Confidence            999999999999999999999999999999999999999999976432   332212                  24899


Q ss_pred             eEEEeccceeEEcCCCCChhhhhhcccccchhhhhhhhc--CCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC
Q 026087          151 QYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT--AKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI  227 (243)
Q Consensus       151 ~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~--~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~  227 (243)
                      +|+.++...++++|+++++++++.+.+++.|||+++...  .+++++++|+|+|+ |.+|++++++|+.+|+ +++++++
T Consensus       148 ~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~-~vv~~~~  226 (393)
T cd08246         148 QFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGA-NPVAVVS  226 (393)
T ss_pred             eEEEechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCC-eEEEEeC
Confidence            999999999999999999999999999999999987654  67899999999997 9999999999999999 7888889


Q ss_pred             ChhHHHHHHHhccc
Q 026087          228 DPKKFDRVLNALAM  241 (243)
Q Consensus       228 ~~~~~~~~~~~Ga~  241 (243)
                      ++++.++++++|++
T Consensus       227 s~~~~~~~~~~G~~  240 (393)
T cd08246         227 SEEKAEYCRALGAE  240 (393)
T ss_pred             CHHHHHHHHHcCCC
Confidence            99999999999974

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=4.4e-32  Score=219.97  Aligned_cols=188  Identities=29%  Similarity=0.319  Sum_probs=174.3

Q ss_pred             CcccceeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCC
Q 026087            5 GQVITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV   82 (243)
Q Consensus         5 ~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~   82 (243)
                      .+|+..|-+++++.|..  +++++.|.|+|.++|++||-.|+|+|+.|..++.|.+...+.|+++|-|++|+|+++|+++
T Consensus         4 ~~p~~~k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~~~plPytpGmEaaGvVvAvG~gv   83 (336)
T KOG1197|consen    4 ASPPLLKCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYDPAPLPYTPGMEAAGVVVAVGEGV   83 (336)
T ss_pred             CCCchheEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccCCCCCCcCCCcccceEEEEecCCc
Confidence            56778899999988765  8999999999999999999999999999999999999777899999999999999999999


Q ss_pred             CcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEE
Q 026087           83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK  162 (243)
Q Consensus        83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  162 (243)
                      +++++||||+...                                                 ..|.|+|+..+|...+++
T Consensus        84 tdrkvGDrVayl~-------------------------------------------------~~g~yaee~~vP~~kv~~  114 (336)
T KOG1197|consen   84 TDRKVGDRVAYLN-------------------------------------------------PFGAYAEEVTVPSVKVFK  114 (336)
T ss_pred             cccccccEEEEec-------------------------------------------------cchhhheeccccceeecc
Confidence            9999999997431                                                 134899999999999999


Q ss_pred             cCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       163 lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +|+.+++.+||++.+..+|||..+++..++++|++|||+.+ |++|++++|+++..|+ .+|++.++++|.+.+++.|+.
T Consensus       115 vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a-~tI~~asTaeK~~~akenG~~  193 (336)
T KOG1197|consen  115 VPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGA-HTIATASTAEKHEIAKENGAE  193 (336)
T ss_pred             CCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCc-EEEEEeccHHHHHHHHhcCCc
Confidence            99999999999999999999998889999999999999965 9999999999999999 999999999999999999987


Q ss_pred             C
Q 026087          242 S  242 (243)
Q Consensus       242 ~  242 (243)
                      .
T Consensus       194 h  194 (336)
T KOG1197|consen  194 H  194 (336)
T ss_pred             c
Confidence            4

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=100.00  E-value=2.1e-31  Score=236.23  Aligned_cols=217  Identities=31%  Similarity=0.435  Sum_probs=182.5

Q ss_pred             eeEEEEecCCCCeEEEeeccCCC-CCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~-~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G   88 (243)
                      ||++++.+++. ++++++++|.+ .++|++||++++++|++|++.+.|..+ .++|.++|||++|+|+++|++++.|++|
T Consensus         1 m~~~~~~~~~~-~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~-~~~p~~~g~e~~G~V~~vG~~v~~~~~G   78 (375)
T cd08282           1 MKAVVYGGPGN-VAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTG-AEPGLVLGHEAMGEVEEVGSAVESLKVG   78 (375)
T ss_pred             CceEEEecCCc-eeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC-CCCCceeccccEEEEEEeCCCCCcCCCC
Confidence            57899888764 99999999996 799999999999999999999988765 3568899999999999999999999999


Q ss_pred             CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc--eeEEcCCC
Q 026087           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ  166 (243)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~lp~~  166 (243)
                      |+|+..+..+|+.|.+|+.++.+.|....+....+..   |        . .-.....|+|++|+.++.+  .++++|++
T Consensus        79 d~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~---~--------~-~~~~~~~g~~a~y~~v~~~~~~~~~lP~~  146 (375)
T cd08282          79 DRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAY---G--------Y-VDMGPYGGGQAEYLRVPYADFNLLKLPDR  146 (375)
T ss_pred             CEEEEeCCCCCCCCHHHHCcCcccCCCCCcccccccc---c--------c-cccCCCCCeeeeEEEeecccCcEEECCCC
Confidence            9999999999999999999999999864322100000   0        0 0000113589999999976  89999999


Q ss_pred             CChh---hhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          167 APLD---KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       167 ~~~~---~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +++.   +++.+..+..++|+++ ....+++|++|+|.|+|.+|++++|+|+++|+.+|++++++++|.++++++|++
T Consensus       147 ~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~~  223 (375)
T cd08282         147 DGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAI  223 (375)
T ss_pred             CChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCe
Confidence            9998   4677777889999987 778899999999998899999999999999986788999999999999999964

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=2.1e-31  Score=233.12  Aligned_cols=211  Identities=30%  Similarity=0.437  Sum_probs=186.5

Q ss_pred             eeEEEEecCCCCeEEEeeccCCC-CCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~-~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G   88 (243)
                      |||+++.+++. +++++++.|+| .++||+||++++++|+.|+..+.|.++..++|.++|||++|+|+++|++++.+++|
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~G   79 (345)
T cd08286           1 MKALVYHGPGK-ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVTPGRILGHEGVGVVEEVGSAVTNFKVG   79 (345)
T ss_pred             CceEEEecCCc-eeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCCCCCCceecccceEEEEEeccCccccCCC
Confidence            68999988876 99999999986 89999999999999999999999876554567899999999999999999999999


Q ss_pred             CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc--eeEEcCCC
Q 026087           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ  166 (243)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~lp~~  166 (243)
                      |+|++.+...|+.|.+|..+..+.|....+.  .|.. .+                  |+|++|+.++..  .++++|++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~------------------g~~~~~~~v~~~~~~~~~lp~~  138 (345)
T cd08286          80 DRVLISCISSCGTCGYCRKGLYSHCESGGWI--LGNL-ID------------------GTQAEYVRIPHADNSLYKLPEG  138 (345)
T ss_pred             CEEEECCcCCCCCChHHHCcCcccCCCcccc--cccc-cC------------------CeeeeEEEcccccCceEECCCC
Confidence            9999998889999999999999999876442  1211 22                  389999999987  89999999


Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++..+++.+.+++.+||.++....++.++++|||.|+|.+|.+++|+|+.+|+.+|++++++++|.++++++|++.
T Consensus       139 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~  214 (345)
T cd08286         139 VDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATH  214 (345)
T ss_pred             CCHHHhhhccchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCc
Confidence            9999999999999999987777788999999999988999999999999999448999999999999999999864

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=3e-31  Score=230.09  Aligned_cols=208  Identities=39%  Similarity=0.623  Sum_probs=185.7

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd   89 (243)
                      |||+++..++..+.+++.|.|.+.+++|+||++++++|+.|+..+.|..+....|.++|||++|+|+++|++++.|++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd   80 (332)
T cd08259           1 MKAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHEIVGTVEEVGEGVERFKPGD   80 (332)
T ss_pred             CeEEEEecCCCceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCCCCCCeeccccceEEEEEECCCCccCCCCC
Confidence            68999987666699999999999999999999999999999999988766556788999999999999999999999999


Q ss_pred             EEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCCh
Q 026087           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (243)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~  169 (243)
                      +|+...+..|++|.+|..+..++|....   .+|.. .                  .|+|++|+.++...++++|+++++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~------------------~g~~~~~~~v~~~~~~~ip~~~~~  138 (332)
T cd08259          81 RVILYYYIPCGKCEYCLSGEENLCRNRA---EYGEE-V------------------DGGFAEYVKVPERSLVKLPDNVSD  138 (332)
T ss_pred             EEEECCCCCCcCChhhhCCCcccCCCcc---ccccc-c------------------CCeeeeEEEechhheEECCCCCCH
Confidence            9999998999999999999999998752   23322 2                  348999999999999999999999


Q ss_pred             hhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      ++++.+.+++.+||+++.. ..+.+++++||+|+ |.+|++++++++.+|+ +|+++.+++++.+.+.++|++
T Consensus       139 ~~~~~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~  209 (332)
T cd08259         139 ESAALAACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILKELGAD  209 (332)
T ss_pred             HHHhhhccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHcCCc
Confidence            9999999999999998766 88999999999987 9999999999999999 899988888888888877764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=100.00  E-value=1.9e-31  Score=233.99  Aligned_cols=210  Identities=30%  Similarity=0.462  Sum_probs=186.6

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC------------CCCCCeeeeeceEEEEEE
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP------------EGLFPCILGHEAAGIVES   77 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~------------~~~~p~~~G~e~vG~V~~   77 (243)
                      |||+++..++.++++++.|.|++.++||+||+.++++|++|+..+.+.++            ..++|.++|||++|+|++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~   80 (350)
T cd08240           1 MKAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVA   80 (350)
T ss_pred             CeeEEeccCCCCceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEe
Confidence            78999998888899999999999999999999999999999999887543            124567899999999999


Q ss_pred             eCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEecc
Q 026087           78 VGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD  157 (243)
Q Consensus        78 ~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  157 (243)
                      +|++++++++||+|+..+...|++|.+|.++.+++|.....   .|..                   ..|++++|+.++.
T Consensus        81 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------------------~~g~~~~~~~~~~  138 (350)
T cd08240          81 VGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRA---LGIF-------------------QDGGYAEYVIVPH  138 (350)
T ss_pred             eCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCc---eeee-------------------ccCcceeeEEecH
Confidence            99999999999999999999999999999999999976532   1211                   2348999999999


Q ss_pred             ceeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       158 ~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      +.++++|+++++.+++.+.+.+.|||+++......+++++|||+|+|.+|++++|+|+.+|+++|+++++++++.+.+.+
T Consensus       139 ~~~~~~p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~  218 (350)
T cd08240         139 SRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA  218 (350)
T ss_pred             HHeeeCCCCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            99999999999999999999999999988777667789999999889999999999999999788999999999999999


Q ss_pred             hccc
Q 026087          238 ALAM  241 (243)
Q Consensus       238 ~Ga~  241 (243)
                      +|++
T Consensus       219 ~g~~  222 (350)
T cd08240         219 AGAD  222 (350)
T ss_pred             hCCc
Confidence            9875

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=100.00  E-value=4.2e-31  Score=230.97  Aligned_cols=211  Identities=30%  Similarity=0.445  Sum_probs=182.0

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCC-CCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQ-AGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~-~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G   88 (243)
                      |||+++.+++ .+++++++.|.|. ++||+||+.++++|+.|+....+.++. .+|.++|||++|+|+++|++++.+++|
T Consensus         1 ~~a~~~~~~~-~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~vG~~v~~~~~G   78 (344)
T cd08284           1 MKAVVFKGPG-DVRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIPS-TPGFVLGHEFVGEVVEVGPEVRTLKVG   78 (344)
T ss_pred             CeeEEEecCC-CceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCCC-CCCcccccceEEEEEeeCCCccccCCC
Confidence            6799998875 4999999999985 999999999999999999998886652 457889999999999999999999999


Q ss_pred             CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc--eeEEcCCC
Q 026087           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ  166 (243)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~lp~~  166 (243)
                      |+|+..+..+|++|.+|.+++.++|++...   +|..   +            .....|+|++|+.++.+  .++++|++
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~------------~~~~~g~~~~~~~v~~~~~~~~~~p~~  140 (344)
T cd08284          79 DRVVSPFTIACGECFYCRRGQSGRCAKGGL---FGYA---G------------SPNLDGAQAEYVRVPFADGTLLKLPDG  140 (344)
T ss_pred             CEEEEcccCCCCCChHHhCcCcccCCCCcc---cccc---c------------cCCCCCceeEEEEcccccCceEECCCC
Confidence            999998888999999999999999986532   1110   0            00123489999999865  99999999


Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +++.+++.+++++.|||+++. .....++++|||+|+|.+|++++++|+.+|+.+|++++++++|.++++++|++
T Consensus       141 l~~~~a~~l~~~~~ta~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~  214 (344)
T cd08284         141 LSDEAALLLGDILPTGYFGAK-RAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAE  214 (344)
T ss_pred             CCHHHhhhhcCchHHHHhhhH-hcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCe
Confidence            999999999999999999874 47889999999998899999999999999975799998889999999999864

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=99.98  E-value=5.1e-31  Score=229.89  Aligned_cols=208  Identities=29%  Similarity=0.471  Sum_probs=182.8

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd   89 (243)
                      |||+++.+++....+++.+.|.+.++||+|||+++++|++|+..+.+..+. ..|.++|||++|+|+++|++++.|++||
T Consensus         1 mka~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~~G~~v~~~~~Gd   79 (338)
T PRK09422          1 MKAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD-KTGRILGHEGIGIVKEVGPGVTSLKVGD   79 (338)
T ss_pred             CeEEEecCCCCCceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC-CCCccCCcccceEEEEECCCCccCCCCC
Confidence            789999988775448999999999999999999999999999998886543 3467899999999999999999999999


Q ss_pred             EEeeec-ccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCC
Q 026087           90 HVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (243)
Q Consensus        90 ~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~  168 (243)
                      +|++.+ ..+|+.|.+|..+.++.|.....   .|.. .+                  |+|++|+.++.+.++++|++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~v~~~~~~~~p~~~~  137 (338)
T PRK09422         80 RVSIAWFFEGCGHCEYCTTGRETLCRSVKN---AGYT-VD------------------GGMAEQCIVTADYAVKVPEGLD  137 (338)
T ss_pred             EEEEccCCCCCCCChhhcCCCcccCCCccc---cCcc-cc------------------CcceeEEEEchHHeEeCCCCCC
Confidence            998754 55799999999999999986542   2222 22                  3899999999999999999999


Q ss_pred             hhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~-~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +.+++.+.+...|||+++ ....+++|++|||+|+|.+|++++++|+. +|+ +|+++++++++.+.++++|++.
T Consensus       138 ~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~-~v~~~~~~~~~~~~~~~~g~~~  210 (338)
T PRK09422        138 PAQASSITCAGVTTYKAI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALAKEVGADL  210 (338)
T ss_pred             HHHeehhhcchhHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHcCCcE
Confidence            999999999999999986 77789999999999999999999999998 599 8999999999999999999754

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.98  E-value=6.5e-31  Score=229.66  Aligned_cols=215  Identities=29%  Similarity=0.383  Sum_probs=184.3

Q ss_pred             eEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCCE
Q 026087           11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDH   90 (243)
Q Consensus        11 ~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~   90 (243)
                      |+++.++.+..+++++++.|.+.++|++||+.++++|++|+..+.+.....++|.++|||++|+|+++|+++++|++||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~   80 (337)
T cd05283           1 KGYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEIVGIVVAVGSKVTKFKVGDR   80 (337)
T ss_pred             CceEEecCCCCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCCCCCCcccCcceeeEEEEECCCCcccCCCCE
Confidence            56788888777999999999999999999999999999999999887655567889999999999999999999999999


Q ss_pred             Eee-ecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCCh
Q 026087           91 VIP-CYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (243)
Q Consensus        91 V~~-~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~  169 (243)
                      |++ .....|++|.+|.++..++|+...... .|.. ..+             ....|+|++|+.++.+.++++|+++++
T Consensus        81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~-------------~~~~g~~~~~~~v~~~~~~~lp~~~~~  145 (337)
T cd05283          81 VGVGCQVDSCGTCEQCKSGEEQYCPKGVVTY-NGKY-PDG-------------TITQGGYADHIVVDERFVFKIPEGLDS  145 (337)
T ss_pred             EEEecCCCCCCCCccccCCchhcCcchhhcc-cccc-cCC-------------CcCCCcceeEEEechhheEECCCCCCH
Confidence            974 445589999999999999998765321 1110 000             122358999999999999999999999


Q ss_pred             hhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++++.+.+...+||.++.. ..+++|++++|.|+|.+|++++++++.+|+ +|+++++++++.++++++|++.
T Consensus       146 ~~aa~l~~~~~ta~~~~~~-~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~  216 (337)
T cd05283         146 AAAAPLLCAGITVYSPLKR-NGVGPGKRVGVVGIGGLGHLAVKFAKALGA-EVTAFSRSPSKKEDALKLGADE  216 (337)
T ss_pred             HHhhhhhhHHHHHHHHHHh-cCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcE
Confidence            9999999999999997644 458999999998889999999999999999 8999999999999999898763

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=99.98  E-value=7.5e-31  Score=234.38  Aligned_cols=213  Identities=22%  Similarity=0.283  Sum_probs=181.7

Q ss_pred             ccceeEEEEec--CCC---CeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC----------CCCCC-eeeeec
Q 026087            7 VITCKAAVAWE--PNK---PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP----------EGLFP-CILGHE   70 (243)
Q Consensus         7 ~~~~~a~~~~~--~~~---~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~----------~~~~p-~~~G~e   70 (243)
                      +.+|||+++..  +++   .+++++.+.|.++++|++||++++++|++|.+...+...          ....| .++|||
T Consensus         5 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~e   84 (398)
T TIGR01751         5 PETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGSD   84 (398)
T ss_pred             chhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceecccc
Confidence            45799999965  443   389999999999999999999999999999887755321          11223 379999


Q ss_pred             eEEEEEEeCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCccee
Q 026087           71 AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFS  150 (243)
Q Consensus        71 ~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~  150 (243)
                      ++|+|+++|++++.|++||+|++.....|++|++|..++++.|.....   .|..                  ...|+|+
T Consensus        85 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~------------------~~~g~~a  143 (398)
T TIGR01751        85 ASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRI---WGYE------------------TNFGSFA  143 (398)
T ss_pred             eEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCcccccccccc---cccc------------------CCCccce
Confidence            999999999999999999999999999999999999999999976432   1221                  1234899


Q ss_pred             eEEEeccceeEEcCCCCChhhhhhcccccchhhhhhhh--cCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC
Q 026087          151 QYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN--TAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI  227 (243)
Q Consensus       151 ~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~--~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~  227 (243)
                      +|+.++...++++|+++++++++.+.++..++|+++..  ...+.+|++|+|+|+ |.+|++++++|+++|+ +++++++
T Consensus       144 e~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~-~vi~~~~  222 (398)
T TIGR01751       144 EFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGG-NPVAVVS  222 (398)
T ss_pred             EEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-eEEEEcC
Confidence            99999999999999999999999999999999998754  467899999999998 9999999999999999 7888888


Q ss_pred             ChhHHHHHHHhccc
Q 026087          228 DPKKFDRVLNALAM  241 (243)
Q Consensus       228 ~~~~~~~~~~~Ga~  241 (243)
                      ++++.+.++++|++
T Consensus       223 ~~~~~~~~~~~g~~  236 (398)
T TIGR01751       223 SPEKAEYCRELGAE  236 (398)
T ss_pred             CHHHHHHHHHcCCC
Confidence            89999999999975

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=1.3e-30  Score=230.31  Aligned_cols=230  Identities=33%  Similarity=0.574  Sum_probs=190.3

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCc---CC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE---VQ   86 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~---~~   86 (243)
                      |||+++.+++.++++++.+.|.++++||+||+.++++|++|+.++.+.++. .+|.++|||++|+|+.+|+++.+   |+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~-~~p~~~g~e~~G~v~~vG~~~~~~~~~~   79 (367)
T cd08263           1 MKAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPF-PPPFVLGHEISGEVVEVGPNVENPYGLS   79 (367)
T ss_pred             CeeEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCC-CCCcccccccceEEEEeCCCCCCCCcCC
Confidence            689999998777899999999999999999999999999999998887654 56789999999999999999988   99


Q ss_pred             CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCc-eecCCCccccccC-CcceeeecCCcceeeEEEeccceeEEcC
Q 026087           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAG-VMMNDRKSRFSIN-GKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (243)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G-~~~~~g~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~lp  164 (243)
                      +||+|+..+..+|++|.+|..+++++|+....+..++ .. .+|++.+... +.+++ ....|+|++|+.++.+.++++|
T Consensus        80 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~P  157 (367)
T cd08263          80 VGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTL-YDGTTRLFRLDGGPVY-MYSMGGLAEYAVVPATALAPLP  157 (367)
T ss_pred             CCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccc-cCCcccccccCCCccc-cccCCcceeEEEechhhEEECC
Confidence            9999999888899999999999999999764211111 00 1111111000 00000 0124589999999999999999


Q ss_pred             CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++++.+++.+.+++.|||.++.....+.++++|||+|+|.+|.+++++|+.+|+.+++++++++++.+.++++|++.
T Consensus       158 ~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~  235 (367)
T cd08263         158 ESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATH  235 (367)
T ss_pred             CCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCce
Confidence            999999999999999999998878788899999999988999999999999999955999989999999998888753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.97  E-value=1.8e-30  Score=225.71  Aligned_cols=209  Identities=31%  Similarity=0.473  Sum_probs=185.8

Q ss_pred             eeEEEEecCCC----CeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcC
Q 026087           10 CKAAVAWEPNK----PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV   85 (243)
Q Consensus        10 ~~a~~~~~~~~----~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~   85 (243)
                      ||++++.+++.    .+++++.+.|.+.++||+||+.++++|++|+..+.|..+...+|.++|||++|+|+++|+++.+|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~   80 (329)
T cd08298           1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLIPGHEIVGRVEAVGPGVTRF   80 (329)
T ss_pred             CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCCCCCCccccccccEEEEEECCCCCCC
Confidence            68999998884    58888988888999999999999999999999998876555678899999999999999999999


Q ss_pred             CCCCEEeeec-ccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087           86 QPGDHVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (243)
Q Consensus        86 ~~Gd~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp  164 (243)
                      ++||+|.+.+ ..+|++|.+|..+.+++|.....   .|.. .+                  |+|++|+.++...++++|
T Consensus        81 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~~~~~~~~~lp  138 (329)
T cd08298          81 SVGDRVGVPWLGSTCGECRYCRSGRENLCDNARF---TGYT-VD------------------GGYAEYMVADERFAYPIP  138 (329)
T ss_pred             cCCCEEEEeccCCCCCCChhHhCcChhhCCCccc---cccc-cC------------------CceEEEEEecchhEEECC
Confidence            9999997754 46799999999999999986653   2322 12                  389999999999999999


Q ss_pred             CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++++.+++.+.+++.|||+++ ...++++++++||+|+|.+|++++++++..|+ +|+++++++++.+.++++|++.
T Consensus       139 ~~~~~~~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~  214 (329)
T cd08298         139 EDYDDEEAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELARELGADW  214 (329)
T ss_pred             CCCCHHHhhHhhhhhHHHHHHH-HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEcCChHHHHHHHHhCCcE
Confidence            9999999999999999999987 88899999999999999999999999999999 8999999999999999999753

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=99.97  E-value=1.1e-30  Score=234.29  Aligned_cols=197  Identities=20%  Similarity=0.291  Sum_probs=160.5

Q ss_pred             cceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhh-cCCCC-C-----CCCCeeeeeceEEEEEEeCC
Q 026087            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTW-SGKDP-E-----GLFPCILGHEAAGIVESVGE   80 (243)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~-~g~~~-~-----~~~p~~~G~e~vG~V~~~G~   80 (243)
                      |.||++++.+++. ++++++|.|.|+++||+|||++++||++|++.+ .|... .     .++|.++|||++|+|+++|+
T Consensus         1 m~~~a~~~~~~~~-l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~   79 (410)
T cd08238           1 MKTKAWRMYGKGD-LRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGK   79 (410)
T ss_pred             CCcEEEEEEcCCc-eEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCC
Confidence            4689999999886 999999999999999999999999999999976 45321 1     14788999999999999999


Q ss_pred             CCC-cCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc-
Q 026087           81 GVT-EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV-  158 (243)
Q Consensus        81 ~~~-~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-  158 (243)
                      +++ .|++||||++.+...|+.|.+|. +             +|.. .+|                  +|+||+.++.+ 
T Consensus        80 ~v~~~~~vGdrV~~~~~~~c~~~~~c~-~-------------~g~~-~~G------------------~~aey~~v~~~~  126 (410)
T cd08238          80 KWQGKYKPGQRFVIQPALILPDGPSCP-G-------------YSYT-YPG------------------GLATYHIIPNEV  126 (410)
T ss_pred             CccCCCCCCCEEEEcCCcCCCCCCCCC-C-------------cccc-CCC------------------cceEEEEecHHh
Confidence            998 59999999999888899988772 1             1211 233                  99999999987 


Q ss_pred             ---eeEEcCCCCChhhhhhc-ccc-cchhhhhh--------hhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcC--CCEE
Q 026087          159 ---SVAKIDPQAPLDKVCLL-GCG-VPTGLGAV--------WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAG--ASRV  222 (243)
Q Consensus       159 ---~~~~lp~~~~~~~aa~l-~~~-~~ta~~~~--------~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G--~~~v  222 (243)
                         .++++|+++++++++.+ +++ ..+++.++        ....++++|++|+|+|+ |++|++++|+|+++|  +.+|
T Consensus       127 ~~~~~~~lP~~l~~~~aal~epl~~~~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~V  206 (410)
T cd08238         127 MEQDCLLIYEGDGYAEASLVEPLSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLL  206 (410)
T ss_pred             ccCCeEECCCCCCHHHHhhcchHHHHHHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceE
Confidence               58999999999988764 211 11233322        24567899999999985 999999999999975  4579


Q ss_pred             EEEcCChhHHHHHHHh
Q 026087          223 IGIDIDPKKFDRVLNA  238 (243)
Q Consensus       223 i~~~~~~~~~~~~~~~  238 (243)
                      ++++++++|++.++++
T Consensus       207 i~~~~~~~r~~~a~~~  222 (410)
T cd08238         207 VVTDVNDERLARAQRL  222 (410)
T ss_pred             EEEcCCHHHHHHHHHh
Confidence            9999999999999997

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.97  E-value=2.2e-30  Score=228.58  Aligned_cols=209  Identities=25%  Similarity=0.374  Sum_probs=174.1

Q ss_pred             ceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC---CCCCCeeeeeceEEEEEEeCCCCCcC
Q 026087            9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTEV   85 (243)
Q Consensus         9 ~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~---~~~~p~~~G~e~vG~V~~~G~~~~~~   85 (243)
                      .++++++..+.. +++++.+.|.+.++||+||++++++|++|+..+.+...   ...+|.++|||++|+|+++|+++++|
T Consensus        17 ~~~~~~~~~~~~-l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   95 (364)
T PLN02702         17 ENMAAWLVGVNT-LKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKHL   95 (364)
T ss_pred             ccceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCCC
Confidence            355555555544 89999999989999999999999999999998876321   11357789999999999999999999


Q ss_pred             CCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCC
Q 026087           86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (243)
Q Consensus        86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~  165 (243)
                      ++||+|+..+..+|++|.+|..|..+.|+....   ++..                  +..|+|++|+.++.+.++++|+
T Consensus        96 ~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~---~~~~------------------~~~g~~~~y~~v~~~~~~~~P~  154 (364)
T PLN02702         96 VVGDRVALEPGISCWRCNLCKEGRYNLCPEMKF---FATP------------------PVHGSLANQVVHPADLCFKLPE  154 (364)
T ss_pred             CCCCEEEEcCCCCCCCCcchhCcCcccCCCccc---cCCC------------------CCCCcccceEEcchHHeEECCC
Confidence            999999999999999999999999999986432   1111                  1124899999999999999999


Q ss_pred             CCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      ++++.++++. ..+.++|+++ ...++.++++|+|+|+|.+|++++++|+.+|+..+++++++++|.++++++|++
T Consensus       155 ~l~~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~  228 (364)
T PLN02702        155 NVSLEEGAMC-EPLSVGVHAC-RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGAD  228 (364)
T ss_pred             CCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC
Confidence            9999888752 2344577765 677889999999998899999999999999996788898899999999999986

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=2.7e-30  Score=224.18  Aligned_cols=203  Identities=30%  Similarity=0.394  Sum_probs=174.5

Q ss_pred             eeEEEEecCC-CCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087           10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (243)
Q Consensus        10 ~~a~~~~~~~-~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G   88 (243)
                      ||++++..++ ..+++++.+.|+++++||+||+.++++|++|+..+.+.. ..++|.++|||++|+|+++|+++++|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~~-~~~~~~~~g~e~~G~v~~vG~~v~~~~~G   79 (325)
T cd08264           1 MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVK-VKPMPHIPGAEFAGVVEEVGDHVKGVKKG   79 (325)
T ss_pred             CeeEEeccCCCCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCCC-CCCCCeecccceeEEEEEECCCCCCCCCC
Confidence            6789887766 458888988888999999999999999999999887532 22457799999999999999999999999


Q ss_pred             CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCC
Q 026087           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (243)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~  168 (243)
                      |+|++.+...|+.|.+|..|+.++|.+...   +|+.                   ..|+|++|+.++.+.++++|++++
T Consensus        80 d~V~~~~~~~~~~c~~~~~~~~~~~~~~~~---~~~~-------------------~~g~~~~~~~v~~~~~~~~p~~~~  137 (325)
T cd08264          80 DRVVVYNRVFDGTCDMCLSGNEMLCRNGGI---IGVV-------------------SNGGYAEYIVVPEKNLFKIPDSIS  137 (325)
T ss_pred             CEEEECCCcCCCCChhhcCCCccccCccce---eecc-------------------CCCceeeEEEcCHHHceeCCCCCC
Confidence            999999888999999999999999987543   2221                   124899999999999999999999


Q ss_pred             hhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +++++.+.+++.++|+++.. .++++|++|+|+|+ |.+|++++++|+++|+ +|+++++    .+.++++|++
T Consensus       138 ~~~~~~~~~~~~~a~~~l~~-~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~-~v~~~~~----~~~~~~~g~~  205 (325)
T cd08264         138 DELAASLPVAALTAYHALKT-AGLGPGETVVVFGASGNTGIFAVQLAKMMGA-EVIAVSR----KDWLKEFGAD  205 (325)
T ss_pred             HHHhhhhhhhhHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeH----HHHHHHhCCC
Confidence            99999999999999998754 88999999999998 9999999999999999 7888752    3666677764

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=3.8e-30  Score=222.82  Aligned_cols=202  Identities=25%  Similarity=0.432  Sum_probs=173.8

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd   89 (243)
                      |||+++.+++ ++++++++.|.++++||+||+.++++|++|...+.|.++   .|.++|||++|+|+++|++   +++||
T Consensus         1 ~~a~~~~~~~-~~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~---~~~~~G~e~~G~Vv~~G~~---~~~G~   73 (319)
T cd08242           1 MKALVLDGGL-DLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP---FPGVPGHEFVGIVEEGPEA---ELVGK   73 (319)
T ss_pred             CeeEEEeCCC-cEEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC---CCCccCceEEEEEEEeCCC---CCCCC
Confidence            6899998876 499999999999999999999999999999999988653   5778999999999999987   67999


Q ss_pred             EEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCCh
Q 026087           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (243)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~  169 (243)
                      +|...+..+|+.|.+|..+..+.|.....   .+....+                  |+|++|+.++.+.++++|++++.
T Consensus        74 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------------------g~~~~~~~v~~~~~~~lP~~~~~  132 (319)
T cd08242          74 RVVGEINIACGRCEYCRRGLYTHCPNRTV---LGIVDRD------------------GAFAEYLTLPLENLHVVPDLVPD  132 (319)
T ss_pred             eEEECCCcCCCCChhhhCcCcccCCCCcc---cCccCCC------------------CceEEEEEechHHeEECcCCCCH
Confidence            99999988999999999999988876442   2221112                  38999999999999999999998


Q ss_pred             hhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++++.+ ....++|. +....+++++++|||+|+|.+|.+++|+|+.+|+ +|++++.++++.+.++++|++.
T Consensus       133 ~~aa~~-~~~~~~~~-~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~  202 (319)
T cd08242         133 EQAVFA-EPLAAALE-ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARRLGVET  202 (319)
T ss_pred             HHhhhh-hHHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcE
Confidence            887764 34445665 4577889999999999889999999999999999 6999999999999999999863

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.97  E-value=5.8e-30  Score=222.69  Aligned_cols=209  Identities=34%  Similarity=0.506  Sum_probs=187.2

Q ss_pred             eeEEEEecCCCC-eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC-CCCCCeeeeeceEEEEEEeCCCCCcCCC
Q 026087           10 CKAAVAWEPNKP-LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTEVQP   87 (243)
Q Consensus        10 ~~a~~~~~~~~~-~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~-~~~~p~~~G~e~vG~V~~~G~~~~~~~~   87 (243)
                      ||++++..++++ +.+.+.+.|.+++++|+||+.++++|+.|...+.+..+ ..++|.++|+|++|+|+++|+++..|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~~   80 (338)
T cd08254           1 MKAWRFHKGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFKV   80 (338)
T ss_pred             CeeEEEecCCCCceEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCCC
Confidence            689999999887 68888899999999999999999999999999988765 3356789999999999999999999999


Q ss_pred             CCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCC
Q 026087           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (243)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~  167 (243)
                      ||+|+..+..+|+.|.+|..++.+.|.....   .|.. .                  .|+|++|+.++.+.++++|+++
T Consensus        81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~~~~~~~~~lp~~~  138 (338)
T cd08254          81 GDRVAVPAVIPCGACALCRRGRGNLCLNQGM---PGLG-I------------------DGGFAEYIVVPARALVPVPDGV  138 (338)
T ss_pred             CCEEEECCCCCCCCChhhhCcCcccCCCCCc---cccc-c------------------CCcceeeEEechHHeEECCCCC
Confidence            9999999999999999999999999976542   1222 2                  2389999999999999999999


Q ss_pred             ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      ++.+++.+..++.|||+++.....++++++|||.|+|.+|.+++++|+.+|+ +|+++++++++.+.++++|++
T Consensus       139 ~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~g~~  211 (338)
T cd08254         139 PFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGAD  211 (338)
T ss_pred             CHHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCC
Confidence            9999999999999999988888889999999999889999999999999999 799999999999999888864

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=99.97  E-value=4.2e-30  Score=224.74  Aligned_cols=208  Identities=28%  Similarity=0.423  Sum_probs=176.1

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCC---CCCCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---PEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~---~~~~~p~~~G~e~vG~V~~~G~~~~~~~   86 (243)
                      ||++++.++++.+++.+.+.|.|+++||+||++++++|++|+.++.+..   ....+|.++|||++|+|+++|++++.|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~   80 (341)
T PRK05396          1 MKALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFK   80 (341)
T ss_pred             CceEEEecCCCceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCC
Confidence            6899999988889999999999999999999999999999999876532   1224677899999999999999999999


Q ss_pred             CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (243)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  166 (243)
                      +||+|+..+..+|+.|.+|..+..++|+....   .+..                   .+|+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------------------~~g~~~~~~~v~~~~~~~iP~~  138 (341)
T PRK05396         81 VGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKG---VGVN-------------------RPGAFAEYLVIPAFNVWKIPDD  138 (341)
T ss_pred             CCCEEEECCCCCCCCChhhhCcChhhCCCcce---eeec-------------------CCCcceeeEEechHHeEECcCC
Confidence            99999999999999999999999999986431   1211                   2348999999999999999999


Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++.+++.+ ..+.+++.++..  ...+|++|+|.|+|.+|++++|+|+.+|+++|+++++++++.++++++|++.
T Consensus       139 l~~~~~~~~-~~~~~~~~~~~~--~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~  211 (341)
T PRK05396        139 IPDDLAAIF-DPFGNAVHTALS--FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATR  211 (341)
T ss_pred             CCHHHhHhh-hHHHHHHHHHHc--CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcE
Confidence            998888754 455555554432  3468999999988999999999999999966888888999999999999864

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.97  E-value=2.9e-30  Score=223.19  Aligned_cols=184  Identities=26%  Similarity=0.347  Sum_probs=149.9

Q ss_pred             ceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecC-hhhHHhhcCCCCC---CCCCeeeeeceEEEEEEeCCCCCc
Q 026087            9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALC-HTDAYTWSGKDPE---GLFPCILGHEAAGIVESVGEGVTE   84 (243)
Q Consensus         9 ~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~-~~D~~~~~g~~~~---~~~p~~~G~e~vG~V~~~G~~~~~   84 (243)
                      ++||+++.+++. +++++.+.|.|+++||+|||++++|| ++|++.+.|.++.   ..+|.++|||++|+|+++|+++ +
T Consensus         1 ~~ka~~~~~~~~-l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~   78 (308)
T TIGR01202         1 KTQAIVLSGPNQ-IELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-G   78 (308)
T ss_pred             CceEEEEeCCCe-EEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-C
Confidence            478999988776 99999999999999999999999996 7999999887643   2579999999999999999998 6


Q ss_pred             CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (243)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp  164 (243)
                      |++||||++.    +..|.+|..               |   .+                  |+|+||+.+|.+.++++|
T Consensus        79 ~~vGdrV~~~----~~~c~~~~~---------------~---~~------------------G~~aey~~v~~~~~~~ip  118 (308)
T TIGR01202        79 FRPGDRVFVP----GSNCYEDVR---------------G---LF------------------GGASKRLVTPASRVCRLD  118 (308)
T ss_pred             CCCCCEEEEe----Ccccccccc---------------c---cC------------------CcccceEEcCHHHceeCC
Confidence            9999999863    223333211               0   12                  389999999999999999


Q ss_pred             CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      ++++++. +.+. ...|||+++.. . ..++++++|+|+|++|++++|+|+.+|++.|++++.+++|++.+.++
T Consensus       119 ~~~~~~~-a~~~-~~~~a~~~~~~-~-~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~  188 (308)
T TIGR01202       119 PALGPQG-ALLA-LAATARHAVAG-A-EVKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY  188 (308)
T ss_pred             CCCCHHH-Hhhh-HHHHHHHHHHh-c-ccCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc
Confidence            9999764 4444 46789997754 2 34688999999999999999999999996677888888888776554

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.97  E-value=7.8e-30  Score=221.75  Aligned_cols=208  Identities=32%  Similarity=0.479  Sum_probs=183.3

Q ss_pred             eEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCCE
Q 026087           11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDH   90 (243)
Q Consensus        11 ~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~   90 (243)
                      ||+++.+++..+++++.+.|.+.+++++||+.++++|+.|...+.+......+|.++|||++|+|+++|+++++|++||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd~   80 (330)
T cd08245           1 KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHEIVGEVVEVGAGVEGRKVGDR   80 (330)
T ss_pred             CeEEEecCCCCceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCCCCCCcccCccceEEEEEECCCCcccccCCE
Confidence            68888888666999999999999999999999999999999999887654467889999999999999999999999999


Q ss_pred             Eeeecc-cCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCCh
Q 026087           91 VIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (243)
Q Consensus        91 V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~  169 (243)
                      |++.+. ..|++|.+|.+++.+.|++..+   .+.. .                  .|+|++|+.++...++++|+++++
T Consensus        81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~v~~~~~~~~p~~~~~  138 (330)
T cd08245          81 VGVGWLVGSCGRCEYCRRGLENLCQKAVN---TGYT-T------------------QGGYAEYMVADAEYTVLLPDGLPL  138 (330)
T ss_pred             EEEccccCCCCCChhhhCcCcccCcCccc---cCcc-c------------------CCccccEEEEcHHHeEECCCCCCH
Confidence            987654 5699999999999999998543   1211 1                  238999999999999999999999


Q ss_pred             hhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      .+++.+.+...+||.++.. ..++++++|||+|+|.+|++++++|+.+|+ +|+++++++++.+.++++|++.
T Consensus       139 ~~~~~l~~~~~ta~~~l~~-~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~  209 (330)
T cd08245         139 AQAAPLLCAGITVYSALRD-AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGADE  209 (330)
T ss_pred             HHhhhhhhhHHHHHHHHHh-hCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCcE
Confidence            9999999899999997754 789999999999888899999999999999 8999999999999998888753

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=7.8e-30  Score=222.81  Aligned_cols=196  Identities=26%  Similarity=0.417  Sum_probs=169.5

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC-----------CCCCCeeeeeceEEEEEEe
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-----------EGLFPCILGHEAAGIVESV   78 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~-----------~~~~p~~~G~e~vG~V~~~   78 (243)
                      |||+++.++  .+++++++.|+++++||+||+.++++|+.|+..+.|...           ...+|.++|+|++|+|+++
T Consensus         1 m~a~~~~~~--~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v   78 (341)
T cd08262           1 MRAAVFRDG--PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDY   78 (341)
T ss_pred             CceEEEeCC--ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEe
Confidence            689998876  599999999999999999999999999999999887321           2235788999999999999


Q ss_pred             CCCCCc-CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEecc
Q 026087           79 GEGVTE-VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD  157 (243)
Q Consensus        79 G~~~~~-~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  157 (243)
                      |+++++ |++||+|+..+...|+.|.+|..++..                                ...|+|++|+.++.
T Consensus        79 G~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~--------------------------------~~~g~~~~~~~v~~  126 (341)
T cd08262          79 GPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSP--------------------------------EAPGGYAEYMLLSE  126 (341)
T ss_pred             CCCCcCCCCCCCEEEecCCcCCCCChhhhCCCCc--------------------------------CCCCceeeeEEech
Confidence            999987 999999999999999999999432210                                01238999999999


Q ss_pred             ceeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       158 ~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      +.++++|+++++++++ +...+.+||++ ....++++|++|||+|+|.+|.+++|+|+.+|++.++++++++++.+++++
T Consensus       127 ~~~~~lP~~~s~~~a~-~~~~~~~a~~~-~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~  204 (341)
T cd08262         127 ALLLRVPDGLSMEDAA-LTEPLAVGLHA-VRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALA  204 (341)
T ss_pred             HHeEECCCCCCHHHhh-hhhhHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence            9999999999998876 55678889987 477889999999999889999999999999999668888889999999999


Q ss_pred             hccc
Q 026087          238 ALAM  241 (243)
Q Consensus       238 ~Ga~  241 (243)
                      +|++
T Consensus       205 ~g~~  208 (341)
T cd08262         205 MGAD  208 (341)
T ss_pred             cCCc
Confidence            9875

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=1.1e-29  Score=225.80  Aligned_cols=208  Identities=28%  Similarity=0.451  Sum_probs=174.5

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCC------C-CCCCCeeeeeceEEEEEEeCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD------P-EGLFPCILGHEAAGIVESVGEGV   82 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~------~-~~~~p~~~G~e~vG~V~~~G~~~   82 (243)
                      +.+.++.. . .++++++|.|.++++||+||++++++|++|+..+.+..      + ...+|.++|||++|+|+++|+++
T Consensus        29 ~~~~~~~~-~-~~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v  106 (384)
T cd08265          29 LGSKVWRY-P-ELRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKNV  106 (384)
T ss_pred             ceeEEEeC-C-CEEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCCC
Confidence            34444443 3 49999999999999999999999999999998886321      1 12467899999999999999999


Q ss_pred             CcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEE
Q 026087           83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK  162 (243)
Q Consensus        83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  162 (243)
                      +.|++||+|++.+..+|+.|+.|..+++++|.....   .|+. .+                  |+|++|+.++.+.+++
T Consensus       107 ~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~-~~------------------g~~~~~v~v~~~~~~~  164 (384)
T cd08265         107 KNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKE---LGFS-AD------------------GAFAEYIAVNARYAWE  164 (384)
T ss_pred             CCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcce---eeec-CC------------------CcceeeEEechHHeEE
Confidence            999999999999999999999999999999986542   2322 12                  3899999999999999


Q ss_pred             cCCCC-------Chhhhhhcccccchhhhhhhhc-CCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHH
Q 026087          163 IDPQA-------PLDKVCLLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (243)
Q Consensus       163 lp~~~-------~~~~aa~l~~~~~ta~~~~~~~-~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~  234 (243)
                      +|+++       +.. ++++..++.++|+++... .++++|++|||+|+|.+|++++++|+.+|+.+|++++++++|.++
T Consensus       165 lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~  243 (384)
T cd08265         165 INELREIYSEDKAFE-AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNL  243 (384)
T ss_pred             CCccccccccCCCHH-HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHH
Confidence            99863       444 555666888999987655 689999999999889999999999999999779999999999999


Q ss_pred             HHHhcccC
Q 026087          235 VLNALAMS  242 (243)
Q Consensus       235 ~~~~Ga~~  242 (243)
                      ++++|++.
T Consensus       244 ~~~~g~~~  251 (384)
T cd08265         244 AKEMGADY  251 (384)
T ss_pred             HHHcCCCE
Confidence            99999753

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=1.5e-29  Score=220.82  Aligned_cols=206  Identities=35%  Similarity=0.552  Sum_probs=179.5

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd   89 (243)
                      |||+++.+++. +++.++++|.++++|++|||.++++|+.|+....+..+...+|.++|+|++|+|+++|++++.|++||
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd   79 (337)
T cd08261           1 MKALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHELSGEVVEVGEGVAGLKVGD   79 (337)
T ss_pred             CeEEEEeCCCc-eEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCcCCCCcccccccEEEEEEeCCCCCCCCCCC
Confidence            68999988765 89999999999999999999999999999999988765555678999999999999999999999999


Q ss_pred             EEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCCh
Q 026087           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (243)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~  169 (243)
                      +|+..+...|+.|..|..+.++.|.....   .++.                   +.|+|++|+.++.+ ++++|+++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------------------~~g~~~~~v~v~~~-~~~~p~~~~~  136 (337)
T cd08261          80 RVVVDPYISCGECYACRKGRPNCCENLQV---LGVH-------------------RDGGFAEYIVVPAD-ALLVPEGLSL  136 (337)
T ss_pred             EEEECCCCCCCCChhhhCcCcccCCCCCe---eeec-------------------CCCcceeEEEechh-eEECCCCCCH
Confidence            99988888999999999999999953321   1111                   12489999999999 9999999999


Q ss_pred             hhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++++++ ..+.++++++ ....+.+|++|||+|+|.+|.+++|+|+.+|+ +|+++.+++++.++++++|++.
T Consensus       137 ~~aa~~-~~~~~a~~~~-~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~g~~~  206 (337)
T cd08261         137 DQAALV-EPLAIGAHAV-RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGADD  206 (337)
T ss_pred             HHhhhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHhCCCE
Confidence            998877 5677888765 77889999999999889999999999999999 8999988999999998888753

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.97  E-value=1.7e-29  Score=221.00  Aligned_cols=208  Identities=30%  Similarity=0.442  Sum_probs=175.6

Q ss_pred             eeEEEEecCCCCeEEEeeccCCC-CCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~-~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G   88 (243)
                      ||++++.+++. +++++.+.|.| +++||+||+.++++|++|+..+.|.++. ..|.++|||++|+|+++|+++.++++|
T Consensus         1 m~~~~~~~~~~-~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~vG~~v~~~~~G   78 (345)
T cd08287           1 MRATVIHGPGD-IRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPT-RAPAPIGHEFVGVVEEVGSEVTSVKPG   78 (345)
T ss_pred             CceeEEecCCc-eeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCCC-CCCcccccceEEEEEEeCCCCCccCCC
Confidence            68999988776 99999999996 8999999999999999999998887643 457899999999999999999999999


Q ss_pred             CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc--eeEEcCCC
Q 026087           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ  166 (243)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~lp~~  166 (243)
                      |+|+.....+|+.|.+|..++.++|.....   .|.. .+|                  +|++|+.++.+  .++++|++
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~g------------------~~~~~~~v~~~~~~~~~lP~~  136 (345)
T cd08287          79 DFVIAPFAISDGTCPFCRAGFTTSCVHGGF---WGAF-VDG------------------GQGEYVRVPLADGTLVKVPGS  136 (345)
T ss_pred             CEEEeccccCCCCChhhhCcCcccCCCCCc---ccCC-CCC------------------ceEEEEEcchhhCceEECCCC
Confidence            999886677899999999999999986432   2211 233                  89999999975  99999999


Q ss_pred             CChhhhh-----hcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          167 APLDKVC-----LLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       167 ~~~~~aa-----~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      ++++.+.     .+...+.+||+++ ....+++|++|+|.|+|.+|++++|+|+.+|++.++++++++++.+.++++|++
T Consensus       137 l~~~~~~~~~~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~  215 (345)
T cd08287         137 PSDDEDLLPSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGAT  215 (345)
T ss_pred             CChhhhhhhhhHhhhcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence            9872221     1235677888876 467889999999988899999999999999996689998888899999999986


Q ss_pred             C
Q 026087          242 S  242 (243)
Q Consensus       242 ~  242 (243)
                      .
T Consensus       216 ~  216 (345)
T cd08287         216 D  216 (345)
T ss_pred             e
Confidence            4

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=99.97  E-value=7.7e-30  Score=210.22  Aligned_cols=189  Identities=25%  Similarity=0.336  Sum_probs=166.6

Q ss_pred             CcccceeEEEEecCCCC---eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCC-CCCeeeeeceEEEEEEeCC
Q 026087            5 GQVITCKAAVAWEPNKP---LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVGE   80 (243)
Q Consensus         5 ~~~~~~~a~~~~~~~~~---~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~-~~p~~~G~e~vG~V~~~G~   80 (243)
                      ..+...|++++.+.++|   ++++++++|+....+|+||.+|+.||++|+..+.|.|+.. ++|.+-|+|++|+|+.+|+
T Consensus        15 q~~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vGs   94 (354)
T KOG0025|consen   15 QMPARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVGS   94 (354)
T ss_pred             ccccccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEecC
Confidence            44567899999998877   7889999999888889999999999999999999999764 7899999999999999999


Q ss_pred             CCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEecccee
Q 026087           81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV  160 (243)
Q Consensus        81 ~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  160 (243)
                      .+++|++||+|+....                                                +.|+|++|.+++++.+
T Consensus        95 ~vkgfk~Gd~VIp~~a------------------------------------------------~lGtW~t~~v~~e~~L  126 (354)
T KOG0025|consen   95 NVKGFKPGDWVIPLSA------------------------------------------------NLGTWRTEAVFSESDL  126 (354)
T ss_pred             CcCccCCCCeEeecCC------------------------------------------------CCccceeeEeecccce
Confidence            9999999999986543                                                2349999999999999


Q ss_pred             EEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHH----HHH
Q 026087          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF----DRV  235 (243)
Q Consensus       161 ~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~----~~~  235 (243)
                      +++++.++.+.||++.++..|||..+.+..++.+||+|+-.|+ +.+|.+.+|+|++.|+ +.|-+.++...+    +.+
T Consensus       127 i~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~Gi-ktinvVRdR~~ieel~~~L  205 (354)
T KOG0025|consen  127 IKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGI-KTINVVRDRPNIEELKKQL  205 (354)
T ss_pred             EEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCc-ceEEEeecCccHHHHHHHH
Confidence            9999999999999999999999999999999999999999988 9999999999999999 555555655444    445


Q ss_pred             HHhcccC
Q 026087          236 LNALAMS  242 (243)
Q Consensus       236 ~~~Ga~~  242 (243)
                      +++|||.
T Consensus       206 k~lGA~~  212 (354)
T KOG0025|consen  206 KSLGATE  212 (354)
T ss_pred             HHcCCce
Confidence            6789885

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.97  E-value=2.6e-29  Score=219.60  Aligned_cols=207  Identities=33%  Similarity=0.510  Sum_probs=180.0

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd   89 (243)
                      |||+++.+++. +.+++.+.|.+.+++|+||++++++|+.|+.++.+.+.....|.++|+|++|+|+++|++++.|++||
T Consensus         1 ~~~~~~~~~~~-~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~~~~~~~~~g~~~~G~V~~~G~~v~~~~~Gd   79 (343)
T cd08235           1 MKAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHEIAGEIVEVGDGVTGFKVGD   79 (343)
T ss_pred             CeEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCccCCCCcccccceEEEEEeeCCCCCCCCCCC
Confidence            58999988764 99999999999999999999999999999999988764334577999999999999999999999999


Q ss_pred             EEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccce-----eEEcC
Q 026087           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS-----VAKID  164 (243)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~lp  164 (243)
                      +|+..+...|+.|+.|.+++.++|.....   +|..                   ..|+|++|+.++.+.     ++++|
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------------------~~g~~~~~v~v~~~~~~~~~~~~lP  137 (343)
T cd08235          80 RVFVAPHVPCGECHYCLRGNENMCPNYKK---FGNL-------------------YDGGFAEYVRVPAWAVKRGGVLKLP  137 (343)
T ss_pred             EEEEccCCCCCCChHHHCcCcccCCCcce---eccC-------------------CCCcceeeEEecccccccccEEECC
Confidence            99999999999999999999999977542   1211                   224899999999988     99999


Q ss_pred             CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +++++.+++.+ ..+.+||+++. ...+++|++|||+|+|.+|.+++++|+.+|++.|+++++++++.+.+.++|++
T Consensus       138 ~~~~~~~aa~~-~~~~~a~~~l~-~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~  212 (343)
T cd08235         138 DNVSFEEAALV-EPLACCINAQR-KAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGAD  212 (343)
T ss_pred             CCCCHHHHHhh-hHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc
Confidence            99999998776 67889999774 44899999999998899999999999999994499998999998888888764

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=99.97  E-value=2.1e-29  Score=220.50  Aligned_cols=207  Identities=34%  Similarity=0.521  Sum_probs=175.9

Q ss_pred             EEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCC-CCC--CCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087           12 AAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DPE--GLFPCILGHEAAGIVESVGEGVTEVQPG   88 (243)
Q Consensus        12 a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~-~~~--~~~p~~~G~e~vG~V~~~G~~~~~~~~G   88 (243)
                      |+++++++. +++++.+.|.+.++||+|||.++++|+.|+..+.+. ...  ..+|.++|+|++|+|+++|+++++|++|
T Consensus         1 ~~~~~~~~~-~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G   79 (343)
T cd05285           1 AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVG   79 (343)
T ss_pred             CceEecCCc-eeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCC
Confidence            456777754 999999999999999999999999999999876432 111  1356789999999999999999999999


Q ss_pred             CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCC
Q 026087           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (243)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~  168 (243)
                      |+|++.+..+|++|.+|+.|..++|++....   +....                  .|+|++|+.++.+.++++|++++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------------------~g~~~~~~~v~~~~~~~lP~~~~  138 (343)
T cd05285          80 DRVAIEPGVPCRTCEFCKSGRYNLCPDMRFA---ATPPV------------------DGTLCRYVNHPADFCHKLPDNVS  138 (343)
T ss_pred             CEEEEccccCCCCChhHhCcCcccCcCcccc---ccccC------------------CCceeeeEEecHHHcEECcCCCC
Confidence            9999999999999999999999999865321   10001                  23899999999999999999999


Q ss_pred             hhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +.+++.+ ..+.+|++++ ....+++|++|||.|+|.+|.+++|+|+.+|+++|+++++++++.++++++|++.
T Consensus       139 ~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~  210 (343)
T cd05285         139 LEEGALV-EPLSVGVHAC-RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATH  210 (343)
T ss_pred             HHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcE
Confidence            9998876 4778888875 7888999999999988999999999999999944999999999999999888764

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=3.7e-29  Score=217.06  Aligned_cols=209  Identities=29%  Similarity=0.425  Sum_probs=181.2

Q ss_pred             eeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (243)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~   86 (243)
                      |||+++..++.+  +++.+.+.|.+.+++|+||++++++|++|+.++.|.... ...|.++|||++|+|+.+|+++..|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (342)
T cd08266           1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVK   80 (342)
T ss_pred             CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCC
Confidence            688988854432  778888888889999999999999999999999886542 24578999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (243)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  166 (243)
                      +||+|++.+...|+.|.+|.++.+++|.....   .|.. .                  .|++++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~-~------------------~g~~~~~~~~~~~~~~~~p~~  138 (342)
T cd08266          81 PGQRVVIYPGISCGRCEYCLAGRENLCAQYGI---LGEH-V------------------DGGYAEYVAVPARNLLPIPDN  138 (342)
T ss_pred             CCCEEEEccccccccchhhccccccccccccc---cccc-c------------------CcceeEEEEechHHceeCCCC
Confidence            99999999999999999999999999986432   2221 1                  238999999999999999999


Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +++.+++.+.++..++|+++.....++++++++|+|+ +.+|++++++++.+|+ +++.+++++++.+.+.++|.+
T Consensus       139 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~  213 (342)
T cd08266         139 LSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLERAKELGAD  213 (342)
T ss_pred             CCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCC
Confidence            9999999998889999998878888999999999988 7999999999999999 799999998888888777653

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=9.8e-29  Score=213.39  Aligned_cols=209  Identities=29%  Similarity=0.498  Sum_probs=177.9

Q ss_pred             eeEEEEecCC-CCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087           10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (243)
Q Consensus        10 ~~a~~~~~~~-~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G   88 (243)
                      ||++++.+++ ..+++++++.|.+.+++|+|||.++++|++|.....+.+.....|.++|+|++|+|+++|++++.|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   80 (306)
T cd08258           1 MKALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVEGWKVG   80 (306)
T ss_pred             CeeEEEecCCCCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCcCCCCeeeccceEEEEEEECCCcCcCCCC
Confidence            5788888655 349999999999999999999999999999999988876433457899999999999999999999999


Q ss_pred             CEEeeecc-cCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCC
Q 026087           89 DHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (243)
Q Consensus        89 d~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~  167 (243)
                      |+|+..+. .+|+.|++|..+....|+....   +|..                   ..|+|++|+.++.+.++++|+++
T Consensus        81 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------------------~~g~~~~~~~v~~~~~~~lp~~~  138 (306)
T cd08258          81 DRVVSETTFSTCGRCPYCRRGDYNLCPHRKG---IGTQ-------------------ADGGFAEYVLVPEESLHELPENL  138 (306)
T ss_pred             CEEEEccCcCCCCCCcchhCcCcccCCCCce---eeec-------------------CCCceEEEEEcchHHeEECcCCC
Confidence            99988764 6799999999999999987432   2211                   12489999999999999999999


Q ss_pred             ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEE--cCChhHHHHHHHhcccC
Q 026087          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI--DIDPKKFDRVLNALAMS  242 (243)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~--~~~~~~~~~~~~~Ga~~  242 (243)
                      ++.+++ +.....++|+++.....++++++|||.|+|.+|.+++++|+++|+ +|+++  ++++++.++++++|++.
T Consensus       139 ~~~~aa-~~~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~-~v~~~~~~~~~~~~~~~~~~g~~~  213 (306)
T cd08258         139 SLEAAA-LTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGA-TVVVVGTEKDEVRLDVAKELGADA  213 (306)
T ss_pred             CHHHHH-hhchHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEECCCCCHHHHHHHHHhCCcc
Confidence            999876 666788899988888889999999998889999999999999999 78776  33456888888888753

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.97  E-value=4.6e-29  Score=217.79  Aligned_cols=208  Identities=28%  Similarity=0.459  Sum_probs=173.2

Q ss_pred             EEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhc-CCCC--CCCCCeeeeeceEEEEEEeCCCCCcCCCCCE
Q 026087           14 VAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDP--EGLFPCILGHEAAGIVESVGEGVTEVQPGDH   90 (243)
Q Consensus        14 ~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~-g~~~--~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~   90 (243)
                      +++++++ +++++.+.|.++++||+||+.++++|++|+.... +...  ...+|.++|+|++|+|+++|+++++|++||+
T Consensus         2 ~~~~~~~-~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~   80 (339)
T cd08232           2 VIHAAGD-LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQR   80 (339)
T ss_pred             eeccCCc-eEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCE
Confidence            4566665 9999999999999999999999999999988773 3321  1245779999999999999999999999999


Q ss_pred             EeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCChh
Q 026087           91 VIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLD  170 (243)
Q Consensus        91 V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~  170 (243)
                      |+..+..+|++|.+|..|+.+.|.....   ++....+              ....|+|++|+.++.+.++++|++++++
T Consensus        81 V~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~--------------~~~~g~~~~~v~v~~~~~~~iP~~~~~~  143 (339)
T cd08232          81 VAVNPSRPCGTCDYCRAGRPNLCLNMRF---LGSAMRF--------------PHVQGGFREYLVVDASQCVPLPDGLSLR  143 (339)
T ss_pred             EEEccCCcCCCChHHhCcCcccCccccc---eeecccc--------------CCCCCceeeEEEechHHeEECcCCCCHH
Confidence            9999888999999999999999997432   1110000              0123489999999999999999999999


Q ss_pred             hhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          171 KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       171 ~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +++. ..++.++|+++...... ++++|||.|+|.+|.+++|+|+.+|+.+++++++++++.++++++|++
T Consensus       144 ~aa~-~~~~~~a~~~l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~  212 (339)
T cd08232         144 RAAL-AEPLAVALHAVNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGAD  212 (339)
T ss_pred             Hhhh-cchHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCC
Confidence            8876 56778899877655555 899999998899999999999999986799999889998988888874

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.97  E-value=9.9e-29  Score=215.84  Aligned_cols=209  Identities=33%  Similarity=0.516  Sum_probs=182.2

Q ss_pred             eeEEEEecCC-CCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCCC
Q 026087           10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQP   87 (243)
Q Consensus        10 ~~a~~~~~~~-~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~~   87 (243)
                      |||+++.+++ ..+++++++.|.+.++|++||+.++++|+.|..++.+..+. ...|.++|||++|+|+++|++++.|++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~~   80 (341)
T cd08297           1 MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLKV   80 (341)
T ss_pred             CceEEeeccCCCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCCC
Confidence            6899998876 34999999999999999999999999999999998887543 245668999999999999999999999


Q ss_pred             CCEEeeec-ccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087           88 GDHVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (243)
Q Consensus        88 Gd~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  166 (243)
                      ||+|+..+ ...|++|.+|..++.+.|.+...   .|+. .                  .|+|++|+.++.+.++++|++
T Consensus        81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~s~~~~~~~~~~~lp~~  138 (341)
T cd08297          81 GDRVGVKWLYDACGKCEYCRTGDETLCPNQKN---SGYT-V------------------DGTFAEYAIADARYVTPIPDG  138 (341)
T ss_pred             CCEEEEecCCCCCCCCccccCCCcccCCCccc---cccc-c------------------CCcceeEEEeccccEEECCCC
Confidence            99998765 56799999999999999987542   1221 1                  238999999999999999999


Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++.+++.+.....|||+++.. .+++++++|||+|+ +.+|++++++|+++|+ +|+++++++++.+.+.++|++.
T Consensus       139 ~~~~~~a~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~  213 (341)
T cd08297         139 LSFEQAAPLLCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLELAKELGADA  213 (341)
T ss_pred             CCHHHHHHHHcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCcE
Confidence            9999999999999999997655 48999999999988 6799999999999999 8999999999999998888753

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.97  E-value=1.1e-28  Score=214.85  Aligned_cols=206  Identities=33%  Similarity=0.500  Sum_probs=181.2

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd   89 (243)
                      |||+++.+++. +++++.+.|+++++||+||+.++++|+.|+....|..+. .+|.++|+|++|+|+.+|+++++|++||
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~-~~p~~~g~~~~G~v~~vG~~v~~~~~Gd   78 (334)
T cd08234           1 MKALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA-APPLVPGHEFAGVVVAVGSKVTGFKVGD   78 (334)
T ss_pred             CeeEEecCCCc-eEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC-CCCcccccceEEEEEEeCCCCCCCCCCC
Confidence            68999988875 999999999999999999999999999999999887654 3778999999999999999999999999


Q ss_pred             EEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCCh
Q 026087           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (243)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~  169 (243)
                      +|+..+...|++|.+|..++.+.|.....   +|.. .                  .|+|++|+.++.+.++++|+++++
T Consensus        79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~v~~~~~~~lP~~~~~  136 (334)
T cd08234          79 RVAVDPNIYCGECFYCRRGRPNLCENLTA---VGVT-R------------------NGGFAEYVVVPAKQVYKIPDNLSF  136 (334)
T ss_pred             EEEEcCCcCCCCCccccCcChhhCCCcce---eccC-C------------------CCcceeEEEecHHHcEECcCCCCH
Confidence            99998888899999999999988887642   2211 1                  238999999999999999999999


Q ss_pred             hhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      .+++.+ ..+.++++++ ...++++|++|||+|+|.+|.+++++|+++|+++|+++++++++.+.++++|++
T Consensus       137 ~~aa~~-~~~~~a~~~l-~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~  206 (334)
T cd08234         137 EEAALA-EPLSCAVHGL-DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGAT  206 (334)
T ss_pred             HHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCe
Confidence            988766 6777888876 778899999999998899999999999999995489999999999999888864

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.96  E-value=1.2e-28  Score=215.40  Aligned_cols=206  Identities=32%  Similarity=0.494  Sum_probs=179.8

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd   89 (243)
                      |||+++.+.+. +.+++.+.|+++++||+||+.++++|+.|+....+.+.. ..|.++|+|++|+|+.+|+++..|++||
T Consensus         1 ~~a~~~~~~~~-l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~~-~~~~~~g~~~~G~V~~~g~~v~~~~~Gd   78 (343)
T cd08236           1 MKALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGAY-HPPLVLGHEFSGTVEEVGSGVDDLAVGD   78 (343)
T ss_pred             CeeEEEecCCc-eeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCCCC-CCCcccCcceEEEEEEECCCCCcCCCCC
Confidence            68999998865 899999999999999999999999999999988876522 4568899999999999999999999999


Q ss_pred             EEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCCh
Q 026087           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (243)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~  169 (243)
                      +|...+...|+.|.+|..+....|+....   .|..                   ..|+|++|+.++.+.++++|+++++
T Consensus        79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------------------~~g~~~~~~~~~~~~~~~lP~~~~~  136 (343)
T cd08236          79 RVAVNPLLPCGKCEYCKKGEYSLCSNYDY---IGSR-------------------RDGAFAEYVSVPARNLIKIPDHVDY  136 (343)
T ss_pred             EEEEcCCCCCCCChhHHCcChhhCCCcce---Eecc-------------------cCCcccceEEechHHeEECcCCCCH
Confidence            99998888899999999999999887532   2211                   2348999999999999999999999


Q ss_pred             hhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      .+++.+ ....++|.++. ...++++++|||+|+|.+|.+++|+|+.+|+++++++++++++.++++++|++
T Consensus       137 ~~aa~~-~~~~ta~~~l~-~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~  206 (343)
T cd08236         137 EEAAMI-EPAAVALHAVR-LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGAD  206 (343)
T ss_pred             HHHHhc-chHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCC
Confidence            998887 57789999774 77899999999998899999999999999995499998888999998888864

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=99.96  E-value=6.5e-29  Score=215.84  Aligned_cols=182  Identities=23%  Similarity=0.242  Sum_probs=155.4

Q ss_pred             eeEEEEecCCC-----CeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCC
Q 026087           10 CKAAVAWEPNK-----PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVT   83 (243)
Q Consensus        10 ~~a~~~~~~~~-----~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~   83 (243)
                      |||+++.+++.     .++++++|.|.|+++||+||++++++|++|++.+.|.++. ..+|.++|||++|+|+++|++++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~   80 (324)
T cd08291           1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPL   80 (324)
T ss_pred             CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCcc
Confidence            68999998875     3788899999999999999999999999999999887643 35788999999999999999999


Q ss_pred             c-CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEE
Q 026087           84 E-VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK  162 (243)
Q Consensus        84 ~-~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  162 (243)
                      + |++||+|+..+.                              .+                  |+|++|+.+|.+.+++
T Consensus        81 ~~~~vGd~V~~~~~------------------------------~~------------------g~~a~~~~v~~~~~~~  112 (324)
T cd08291          81 AQSLIGKRVAFLAG------------------------------SY------------------GTYAEYAVADAQQCLP  112 (324)
T ss_pred             ccCCCCCEEEecCC------------------------------CC------------------CcchheeeecHHHeEE
Confidence            6 999999975321                              01                  3899999999999999


Q ss_pred             cCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEE-c-CCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF-G-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       163 lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~-G-~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      +|+++++++++.+++...|+|. +...... ++++++|+ | +|.+|++++|+|+.+|+ +|++++++++|.++++++|+
T Consensus       113 iP~~~~~~~aa~~~~~~~ta~~-~~~~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~  189 (324)
T cd08291         113 LPDGVSFEQGASSFVNPLTALG-MLETARE-EGAKAVVHTAAASALGRMLVRLCKADGI-KVINIVRRKEQVDLLKKIGA  189 (324)
T ss_pred             CCCCCCHHHHhhhcccHHHHHH-HHHhhcc-CCCcEEEEccCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCC
Confidence            9999999999988888889975 4455554 55566665 4 59999999999999999 89999999999999999998


Q ss_pred             cC
Q 026087          241 MS  242 (243)
Q Consensus       241 ~~  242 (243)
                      +.
T Consensus       190 ~~  191 (324)
T cd08291         190 EY  191 (324)
T ss_pred             cE
Confidence            64

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd05281 TDH Threonine dehydrogenase

Probab=99.96  E-value=3e-28  Score=213.14  Aligned_cols=208  Identities=32%  Similarity=0.434  Sum_probs=174.8

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCC---CCCCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---PEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~---~~~~~p~~~G~e~vG~V~~~G~~~~~~~   86 (243)
                      ||++++.+++..+.+.+.+.|.|.++|++||++++++|+.|+.++.+..   ....+|.++|||++|+|+.+|+++..|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~   80 (341)
T cd05281           1 MKAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVK   80 (341)
T ss_pred             CcceEEecCCCceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCC
Confidence            6899999887779999999999999999999999999999998765432   1224567899999999999999999999


Q ss_pred             CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (243)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  166 (243)
                      +||+|+..+..+|+.|.+|..+.+++|.....   .|..                   ..|+|++|++++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------------------~~g~~~~~v~v~~~~~~~lP~~  138 (341)
T cd05281          81 VGDYVSAETHIVCGKCYQCRTGNYHVCQNTKI---LGVD-------------------TDGCFAEYVVVPEENLWKNDKD  138 (341)
T ss_pred             CCCEEEECCccCCCCChHHHCcCcccCcccce---Eecc-------------------CCCcceEEEEechHHcEECcCC
Confidence            99999998888999999999999999975321   1111                   1348999999999999999999


Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++++.+ ++...+.++++++.  ...++|++|||.|+|.+|++++++++.+|+.+|++++++++|.++++++|++.
T Consensus       139 ~~~~~a-~~~~~~~~a~~~~~--~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~  211 (341)
T cd05281         139 IPPEIA-SIQEPLGNAVHTVL--AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADV  211 (341)
T ss_pred             CCHHHh-hhhhHHHHHHHHHH--hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcce
Confidence            998544 55567777877654  44578999999888999999999999999866888888899999999998753

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.96  E-value=5.9e-29  Score=212.24  Aligned_cols=161  Identities=27%  Similarity=0.410  Sum_probs=136.7

Q ss_pred             eeeeceEEEEEEeCCCCC------cCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcc
Q 026087           66 ILGHEAAGIVESVGEGVT------EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKP  139 (243)
Q Consensus        66 ~~G~e~vG~V~~~G~~~~------~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~  139 (243)
                      ++|||++|+|+++|++++      +|++||||++.+..+|++|.+|..++++.|++...   +|....++          
T Consensus         1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~~----------   67 (280)
T TIGR03366         1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRK---YGHEALDS----------   67 (280)
T ss_pred             CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhh---cCcccccC----------
Confidence            579999999999999999      89999999999999999999999999999987543   12110000          


Q ss_pred             eeeecCCcceeeEEEeccc-eeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcC
Q 026087          140 IYHFMGTSTFSQYTVVHDV-SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG  218 (243)
Q Consensus       140 ~~~~~~~g~~~~~~~~~~~-~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G  218 (243)
                        .....|+|+||+.+|+. .++++|+++++++++.+.++..|+|+++ +.....+|++|||+|+|++|++++|+|+.+|
T Consensus        68 --~~~~~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G  144 (280)
T TIGR03366        68 --GWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAAL-EAAGDLKGRRVLVVGAGMLGLTAAAAAAAAG  144 (280)
T ss_pred             --CccccccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHH-HhccCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence              00113499999999997 7999999999999999988889999976 4445669999999999999999999999999


Q ss_pred             CCEEEEEcCChhHHHHHHHhcccC
Q 026087          219 ASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       219 ~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++|++++++++|+++++++|++.
T Consensus       145 ~~~Vi~~~~~~~r~~~a~~~Ga~~  168 (280)
T TIGR03366       145 AARVVAADPSPDRRELALSFGATA  168 (280)
T ss_pred             CCEEEEECCCHHHHHHHHHcCCcE
Confidence            966999999999999999999864

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=99.96  E-value=3.4e-28  Score=210.55  Aligned_cols=181  Identities=27%  Similarity=0.301  Sum_probs=159.5

Q ss_pred             eeEEEEecCCCC---eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC-CCCCCeeeeeceEEEEEEeCCCCCcC
Q 026087           10 CKAAVAWEPNKP---LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTEV   85 (243)
Q Consensus        10 ~~a~~~~~~~~~---~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~-~~~~p~~~G~e~vG~V~~~G~~~~~~   85 (243)
                      |||+++.+++.+   ++++++|.|.+.++||+|||+++++|+.|+..+.|.++ ...+|.++|||++|+|+++|+++++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~   80 (324)
T cd08292           1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGL   80 (324)
T ss_pred             CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCC
Confidence            689999877653   78899999999999999999999999999999988764 23568899999999999999999999


Q ss_pred             CCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCC
Q 026087           86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (243)
Q Consensus        86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~  165 (243)
                      ++||+|+..+.                                                 .|+|++|+.++...++++|+
T Consensus        81 ~~Gd~V~~~~~-------------------------------------------------~g~~~~~~~~~~~~~~~ip~  111 (324)
T cd08292          81 QVGQRVAVAPV-------------------------------------------------HGTWAEYFVAPADGLVPLPD  111 (324)
T ss_pred             CCCCEEEeccC-------------------------------------------------CCcceeEEEEchHHeEECCC
Confidence            99999975320                                                 13899999999999999999


Q ss_pred             CCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      ++++++++.+.+...++|+++ ....+++|++|||+|+ |.+|++++++|+++|+ +++++..++++.+.++++|++
T Consensus       112 ~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~  186 (324)
T cd08292         112 GISDEVAAQLIAMPLSALMLL-DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGI-NVINLVRRDAGVAELRALGIG  186 (324)
T ss_pred             CCCHHHhhhccccHHHHHHHH-HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHhcCCC
Confidence            999999999988889999876 5578999999999987 9999999999999999 888888888888888888874

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=99.96  E-value=2.1e-28  Score=213.11  Aligned_cols=185  Identities=23%  Similarity=0.292  Sum_probs=160.6

Q ss_pred             eEEEEecC---CCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcC
Q 026087           11 KAAVAWEP---NKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV   85 (243)
Q Consensus        11 ~a~~~~~~---~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~   85 (243)
                      ||+++.++   +.+  +++.++|.|.|+++||+|||+++++|+.|..++.+..+...+|.++|+|++|+|+++|++++.|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~   80 (336)
T TIGR02817         1 KAVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQPKILGWDAAGVVVAVGDEVTLF   80 (336)
T ss_pred             CceeeccccCCCCcccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence            56777775   433  7888999999999999999999999999999888865544578899999999999999999999


Q ss_pred             CCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCC
Q 026087           86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (243)
Q Consensus        86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~  165 (243)
                      ++||+|+....                                              ....|+|++|+.++.+.++++|+
T Consensus        81 ~~Gd~V~~~~~----------------------------------------------~~~~g~~~~~~~v~~~~~~~ip~  114 (336)
T TIGR02817        81 KPGDEVWYAGD----------------------------------------------IDRPGSNAEFHLVDERIVGHKPK  114 (336)
T ss_pred             CCCCEEEEcCC----------------------------------------------CCCCCcccceEEEcHHHcccCCC
Confidence            99999974210                                              00123899999999999999999


Q ss_pred             CCChhhhhhcccccchhhhhhhhcCCCCC-----CCEEEEEcC-CHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHHHh
Q 026087          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEP-----GSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~-----g~~vlV~G~-g~~G~~a~~~a~~~-G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      ++++++++.++++..|||+++....++.+     |++|||+|+ |.+|.+++|+|+.+ |+ +|+++++++++.+.++++
T Consensus       115 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~-~vi~~~~~~~~~~~l~~~  193 (336)
T TIGR02817       115 SLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGL-TVIATASRPESQEWVLEL  193 (336)
T ss_pred             CCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCC-EEEEEcCcHHHHHHHHHc
Confidence            99999999999999999998877777776     999999987 99999999999998 99 899999999999999999


Q ss_pred             cccC
Q 026087          239 LAMS  242 (243)
Q Consensus       239 Ga~~  242 (243)
                      |++.
T Consensus       194 g~~~  197 (336)
T TIGR02817       194 GAHH  197 (336)
T ss_pred             CCCE
Confidence            9864

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=7e-28  Score=210.98  Aligned_cols=199  Identities=28%  Similarity=0.289  Sum_probs=165.2

Q ss_pred             eeEEEEecCCCC--eEEEe-eccCCCCCCcEEEEEeEEecChhhHHhhcCCCC--------------------CCCCCee
Q 026087           10 CKAAVAWEPNKP--LVIED-VQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP--------------------EGLFPCI   66 (243)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~-~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~--------------------~~~~p~~   66 (243)
                      ||++++.+++.+  +.+.+ .+.|.+.+++|+|||.++++|++|+.++.|.++                    ...+|.+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   80 (350)
T cd08274           1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI   80 (350)
T ss_pred             CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence            678888876643  55654 577778999999999999999999998877542                    2356889


Q ss_pred             eeeceEEEEEEeCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCC
Q 026087           67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGT  146 (243)
Q Consensus        67 ~G~e~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~  146 (243)
                      +|||++|+|+++|+++++|++||+|+..+..+|++|..|..     |..      +|.. .+                  
T Consensus        81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~-----~~~------~~~~-~~------------------  130 (350)
T cd08274          81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPAD-----IDY------IGSE-RD------------------  130 (350)
T ss_pred             cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCcccccc-----ccc------cCCC-CC------------------
Confidence            99999999999999999999999999988888888766431     111      1110 12                  


Q ss_pred             cceeeEEEeccceeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEE
Q 026087          147 STFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI  225 (243)
Q Consensus       147 g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~  225 (243)
                      |++++|+.++...++++|+++++.+++.+.+++.|+|+++ ....+++|++|||+|+ |.+|++++++|+++|+ +++++
T Consensus       131 g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~vi~~  208 (350)
T cd08274         131 GGFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAV  208 (350)
T ss_pred             ccceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCC-EEEEE
Confidence            3899999999999999999999999999999999999976 7778999999999998 9999999999999999 78888


Q ss_pred             cCChhHHHHHHHhccc
Q 026087          226 DIDPKKFDRVLNALAM  241 (243)
Q Consensus       226 ~~~~~~~~~~~~~Ga~  241 (243)
                      +.++ +.+.++++|++
T Consensus       209 ~~~~-~~~~~~~~g~~  223 (350)
T cd08274         209 AGAA-KEEAVRALGAD  223 (350)
T ss_pred             eCch-hhHHHHhcCCe
Confidence            7655 88888888874

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08293 PTGR2 Prostaglandin reductase

Probab=99.96  E-value=1.5e-27  Score=208.69  Aligned_cols=170  Identities=19%  Similarity=0.219  Sum_probs=142.0

Q ss_pred             eEEEeeccCCCC-CCcEEEEEeEEecChhhHHhhcCC---CCCCCCCeeeeeceEEEEEEeCCCCCcCCCCCEEeeeccc
Q 026087           22 LVIEDVQVAPPQ-AGEVRIKILFTALCHTDAYTWSGK---DPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQA   97 (243)
Q Consensus        22 ~~~~~~~~p~~~-~~evlVkv~a~~i~~~D~~~~~g~---~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~V~~~~~~   97 (243)
                      ++++|.+.|.|. +|||||||++++||+.|.......   ....++|.++|||++|+|+++|+++++|++||+|....  
T Consensus        23 ~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~--  100 (345)
T cd08293          23 FRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSFN--  100 (345)
T ss_pred             eEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEecC--
Confidence            889999999874 999999999999999996433211   11125678999999999999999999999999997310  


Q ss_pred             CCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCChhh----hh
Q 026087           98 ECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK----VC  173 (243)
Q Consensus        98 ~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~----aa  173 (243)
                                                                       +.|+||++++.+.++++|+++++.+    ++
T Consensus       101 -------------------------------------------------~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a  131 (345)
T cd08293         101 -------------------------------------------------WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLG  131 (345)
T ss_pred             -------------------------------------------------CCceeEEEecHHHeEEcCccccccchhHHhh
Confidence                                                             1699999999999999999864432    44


Q ss_pred             hcccccchhhhhhhhcCCCCCC--CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH-hcccC
Q 026087          174 LLGCGVPTGLGAVWNTAKVEPG--SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN-ALAMS  242 (243)
Q Consensus       174 ~l~~~~~ta~~~~~~~~~~~~g--~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~-~Ga~~  242 (243)
                      .+.+++.|||+++....++++|  ++|||+|+ |++|++++|+|+++|+.+|+++++++++.+++++ +|++.
T Consensus       132 ~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~  204 (345)
T cd08293         132 AVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDA  204 (345)
T ss_pred             hcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcE
Confidence            5677889999988777778877  99999987 9999999999999998679999999999999876 99864

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.96  E-value=1.9e-27  Score=208.00  Aligned_cols=202  Identities=29%  Similarity=0.403  Sum_probs=171.1

Q ss_pred             ecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCC---CCCCCCeeeeeceEEEEEEeCCCCCcCCCCCEEe
Q 026087           16 WEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI   92 (243)
Q Consensus        16 ~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~---~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~V~   92 (243)
                      .+++.++++++.+.|.|.++|++||+.++++|+.|+.++.+..   ...++|.++|+|++|+|+++|+++++|++||+|+
T Consensus         5 ~~~~~~~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~   84 (340)
T TIGR00692         5 TKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVS   84 (340)
T ss_pred             ccCCCCcEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEE
Confidence            5677779999999999999999999999999999998876542   1224567899999999999999999999999999


Q ss_pred             eecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCChhhh
Q 026087           93 PCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKV  172 (243)
Q Consensus        93 ~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a  172 (243)
                      ..++..|++|..|..+....|.+...   +|.. .                  .|+|++|+.++.+.++++|++++++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~~~~~~~~~lp~~~~~~~a  142 (340)
T TIGR00692        85 VETHIVCGKCYACRRGQYHVCQNTKI---FGVD-T------------------DGCFAEYAVVPAQNIWKNPKSIPPEYA  142 (340)
T ss_pred             ECCcCCCCCChhhhCcChhhCcCcce---Eeec-C------------------CCcceeEEEeehHHcEECcCCCChHhh
Confidence            99999999999999999999998643   2221 1                  248999999999999999999998654


Q ss_pred             hhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          173 CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       173 a~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                       ++...+.++++++  ....++|++|+|.|+|.+|.+++|+++.+|++.|+++++++++.++++++|++.
T Consensus       143 -~~~~~~~~a~~~~--~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~  209 (340)
T TIGR00692       143 -TIQEPLGNAVHTV--LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATY  209 (340)
T ss_pred             -hhcchHHHHHHHH--HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcE
Confidence             4666778888765  344678999999888999999999999999954888888899999999998753

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=99.95  E-value=1.9e-27  Score=207.63  Aligned_cols=184  Identities=29%  Similarity=0.372  Sum_probs=160.7

Q ss_pred             eeEEEEecCCCC---eEEEeeccCCCCC-CcEEEEEeEEecChhhHHhhcCCCCCC-C----CCeeeeeceEEEEEEeCC
Q 026087           10 CKAAVAWEPNKP---LVIEDVQVAPPQA-GEVRIKILFTALCHTDAYTWSGKDPEG-L----FPCILGHEAAGIVESVGE   80 (243)
Q Consensus        10 ~~a~~~~~~~~~---~~~~~~~~p~~~~-~evlVkv~a~~i~~~D~~~~~g~~~~~-~----~p~~~G~e~vG~V~~~G~   80 (243)
                      |||+++.+++.+   +.+++.|.|.|.+ ++|+||+.++++|+.|+..+.+..+.. +    .|.++|||++|+|+++|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~   80 (341)
T cd08290           1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS   80 (341)
T ss_pred             CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence            789999988875   8999999999887 999999999999999999988875422 2    577899999999999999


Q ss_pred             CCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEecccee
Q 026087           81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV  160 (243)
Q Consensus        81 ~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  160 (243)
                      ++..|++||+|+....                                                +.|+|++|+.++...+
T Consensus        81 ~v~~~~~Gd~V~~~~~------------------------------------------------~~g~~~~~~~v~~~~~  112 (341)
T cd08290          81 GVKSLKPGDWVIPLRP------------------------------------------------GLGTWRTHAVVPADDL  112 (341)
T ss_pred             CCCCCCCCCEEEecCC------------------------------------------------CCccchheEeccHHHe
Confidence            9999999999975321                                                0138999999999999


Q ss_pred             EEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCh----hHHHHH
Q 026087          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP----KKFDRV  235 (243)
Q Consensus       161 ~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~----~~~~~~  235 (243)
                      +++|+++++++++.+++...|+|+++.....+++|++|||+|+ |.+|++++++|+++|+ +++++.+++    ++.+.+
T Consensus       113 ~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~  191 (341)
T cd08290         113 IKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGI-KTINVVRDRPDLEELKERL  191 (341)
T ss_pred             EeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCC-eEEEEEcCCCcchhHHHHH
Confidence            9999999999999999999999998877788999999999987 9999999999999999 777776665    678888


Q ss_pred             HHhcccC
Q 026087          236 LNALAMS  242 (243)
Q Consensus       236 ~~~Ga~~  242 (243)
                      +++|++.
T Consensus       192 ~~~g~~~  198 (341)
T cd08290         192 KALGADH  198 (341)
T ss_pred             HhcCCCE
Confidence            8888764

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=99.95  E-value=4.7e-27  Score=204.00  Aligned_cols=184  Identities=26%  Similarity=0.287  Sum_probs=163.4

Q ss_pred             ceeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087            9 TCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (243)
Q Consensus         9 ~~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~   86 (243)
                      +||++++.+++.+  +++++++.|.++++||+||+.++++|++|+....+.++...+|.++|||++|+|+.+|++++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~   80 (327)
T PRK10754          1 MAKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVSKVGSGVKHIK   80 (327)
T ss_pred             CceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCCCCCCCccCcceEEEEEEeCCCCCCCC
Confidence            5899999988764  88899999999999999999999999999999888765545678899999999999999999999


Q ss_pred             CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (243)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  166 (243)
                      +||+|+....                                                +.|+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~------------------------------------------------~~g~~~~~v~v~~~~~~~lp~~  112 (327)
T PRK10754         81 VGDRVVYAQS------------------------------------------------ALGAYSSVHNVPADKAAILPDA  112 (327)
T ss_pred             CCCEEEECCC------------------------------------------------CCcceeeEEEcCHHHceeCCCC
Confidence            9999973210                                                0138999999999999999999


Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +++++++.+.+...++|.++.....+.+|++|+|+|+ |.+|++++++++.+|+ ++++++.++++.+.++++|++
T Consensus       113 ~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~-~v~~~~~~~~~~~~~~~~g~~  187 (327)
T PRK10754        113 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGSAQKAQRAKKAGAW  187 (327)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCC
Confidence            9999999888888999998777788999999999975 9999999999999999 899999999999999999875

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.95  E-value=1.5e-26  Score=200.14  Aligned_cols=187  Identities=22%  Similarity=0.236  Sum_probs=158.1

Q ss_pred             eeEEEEecCCC--CeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087           10 CKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (243)
Q Consensus        10 ~~a~~~~~~~~--~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~   86 (243)
                      |||+++.+++.  ++++++.+.|.+.++||+||+.++++|++|+..+.|..+. ..+|.++|||++|+|+++  +++.|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~   78 (325)
T cd05280           1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFR   78 (325)
T ss_pred             CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCC
Confidence            68999998875  6999999999999999999999999999999999887532 245789999999999998  456899


Q ss_pred             CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (243)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  166 (243)
                      +||+|+....                        ..|+.                   ..|+|++|+.++.+.++++|++
T Consensus        79 ~Gd~V~~~~~------------------------~~g~~-------------------~~g~~~~~~~v~~~~~~~lp~~  115 (325)
T cd05280          79 EGDEVLVTGY------------------------DLGMN-------------------TDGGFAEYVRVPADWVVPLPEG  115 (325)
T ss_pred             CCCEEEEccc------------------------ccCCC-------------------CCceeEEEEEEchhhEEECCCC
Confidence            9999985421                        01111                   1238999999999999999999


Q ss_pred             CChhhhhhcccccchhhhhhhhcCC--CC-CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAK--VE-PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~--~~-~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++.+++.+.+.+.++|.++.....  +. .+++|+|+|+ |.+|++++++|+.+|+ +|+++++++++.+.++++|++.
T Consensus       116 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~  194 (325)
T cd05280         116 LSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGY-TVVALTGKEEQADYLKSLGASE  194 (325)
T ss_pred             CCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcE
Confidence            9999999999999999987755433  35 4579999998 9999999999999999 7999999999999999999764

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=99.95  E-value=1.1e-26  Score=202.94  Aligned_cols=181  Identities=26%  Similarity=0.310  Sum_probs=151.0

Q ss_pred             ceeEEEEecCCC-CeEEEeecc----CCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeece--EEEEEEeCC
Q 026087            9 TCKAAVAWEPNK-PLVIEDVQV----APPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEA--AGIVESVGE   80 (243)
Q Consensus         9 ~~~a~~~~~~~~-~~~~~~~~~----p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~--vG~V~~~G~   80 (243)
                      -+|++....+.. .|++++.+.    |+|++|||||||++++||+.|+..+.|.... ..+|.++|+++  .|.+..+++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~~   86 (338)
T cd08295           7 ILKAYVTGFPKESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVDS   86 (338)
T ss_pred             EEecCCCCCCCccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEec
Confidence            356666444432 389999887    8899999999999999999999999885432 24577888754  355555778


Q ss_pred             CCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEecc-ce
Q 026087           81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD-VS  159 (243)
Q Consensus        81 ~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~  159 (243)
                      .++.|++||+|...                                                    |+|+||+++|. ..
T Consensus        87 ~v~~~~vGd~V~~~----------------------------------------------------g~~aey~~v~~~~~  114 (338)
T cd08295          87 GNPDFKVGDLVWGF----------------------------------------------------TGWEEYSLIPRGQD  114 (338)
T ss_pred             CCCCCCCCCEEEec----------------------------------------------------CCceeEEEecchhc
Confidence            88899999999621                                                    27999999999 79


Q ss_pred             eEEcC-CCCChh-hhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          160 VAKID-PQAPLD-KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       160 ~~~lp-~~~~~~-~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      ++++| +++++. +++++.+++.|||+++....++++|++|||+|+ |.+|++++|+|+.+|+ +|+++++++++.++++
T Consensus       115 ~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~  193 (338)
T cd08295         115 LRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLK  193 (338)
T ss_pred             eeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            99995 678876 788899999999998878889999999999997 9999999999999999 8999999999999999


Q ss_pred             H-hcccC
Q 026087          237 N-ALAMS  242 (243)
Q Consensus       237 ~-~Ga~~  242 (243)
                      + +|++.
T Consensus       194 ~~lGa~~  200 (338)
T cd08295         194 NKLGFDD  200 (338)
T ss_pred             HhcCCce
Confidence            8 99863

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.95  E-value=4.2e-26  Score=197.92  Aligned_cols=203  Identities=27%  Similarity=0.326  Sum_probs=169.1

Q ss_pred             eeEEEEecCC--CCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087           10 CKAAVAWEPN--KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (243)
Q Consensus        10 ~~a~~~~~~~--~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~   86 (243)
                      |||+++...+  ..+++++.+.|.+.++|++||+.++++|++|+....+.++. .+.|.++|||++|+|+++|+.+.+|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (336)
T cd08276           1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFK   80 (336)
T ss_pred             CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCC
Confidence            7899998664  34888888888889999999999999999999998876543 24678999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (243)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  166 (243)
                      +||+|.......|+.+.+|      .|....   ..|.                   +..|+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~------~~~~~~---~~~~-------------------~~~g~~~~~~~~~~~~~~~lp~~  132 (336)
T cd08276          81 VGDRVVPTFFPNWLDGPPT------AEDEAS---ALGG-------------------PIDGVLAEYVVLPEEGLVRAPDH  132 (336)
T ss_pred             CCCEEEEeccccccccccc------cccccc---cccc-------------------ccCceeeeEEEecHHHeEECCCC
Confidence            9999998766555443332      221110   1111                   11348999999999999999999


Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +++.+++.+.+.+.+||+++.....+++|++|+|+|+|.+|++++++++++|+ +|++++.++++.+.+.++|++
T Consensus       133 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~  206 (336)
T cd08276         133 LSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKALGAD  206 (336)
T ss_pred             CCHHHhhhhhHHHHHHHHHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCC
Confidence            99999999999999999988777889999999999889999999999999999 799999999999999888865

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=99.95  E-value=2.5e-26  Score=199.39  Aligned_cols=175  Identities=22%  Similarity=0.210  Sum_probs=147.5

Q ss_pred             ceeEEEEecC--CCC----eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCC
Q 026087            9 TCKAAVAWEP--NKP----LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV   82 (243)
Q Consensus         9 ~~~a~~~~~~--~~~----~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~   82 (243)
                      .||++++.++  +.+    +++++.+.|.|++|||+|||++++||+.|......   ..++|.++|+|++|+|++   .+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~---~~~~p~v~G~e~~G~V~~---~~   75 (329)
T cd08294           2 KAKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSKR---LNEGDTMIGTQVAKVIES---KN   75 (329)
T ss_pred             CceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhccccc---CCCCCcEecceEEEEEec---CC
Confidence            4889998883  332    88999999999999999999999999887552211   124688999999999995   34


Q ss_pred             CcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc---e
Q 026087           83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV---S  159 (243)
Q Consensus        83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~  159 (243)
                      +.|++||+|...                                                    ++|++|+.++..   .
T Consensus        76 ~~~~~Gd~V~~~----------------------------------------------------~~~~~~~~~~~~~~~~  103 (329)
T cd08294          76 SKFPVGTIVVAS----------------------------------------------------FGWRTHTVSDGKDQPD  103 (329)
T ss_pred             CCCCCCCEEEee----------------------------------------------------CCeeeEEEECCccccc
Confidence            579999999731                                                    168899999999   9


Q ss_pred             eEEcCCCCCh-----hhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHH
Q 026087          160 VAKIDPQAPL-----DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (243)
Q Consensus       160 ~~~lp~~~~~-----~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~  233 (243)
                      ++++|+++++     ..++++++++.|||+++....++++|++|||+|+ |.+|.+++|+|+.+|+ +|+++++++++.+
T Consensus       104 ~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~  182 (329)
T cd08294         104 LYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVA  182 (329)
T ss_pred             eEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHH
Confidence            9999999882     2334677899999998888888999999999986 9999999999999999 8999999999999


Q ss_pred             HHHHhcccC
Q 026087          234 RVLNALAMS  242 (243)
Q Consensus       234 ~~~~~Ga~~  242 (243)
                      +++++|++.
T Consensus       183 ~l~~~Ga~~  191 (329)
T cd08294         183 WLKELGFDA  191 (329)
T ss_pred             HHHHcCCCE
Confidence            999999864

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=99.95  E-value=4.1e-26  Score=200.50  Aligned_cols=185  Identities=20%  Similarity=0.252  Sum_probs=151.3

Q ss_pred             CcccceeEEEEecCC------CCeEEEee---ccCC-CCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeee--ceE
Q 026087            5 GQVITCKAAVAWEPN------KPLVIEDV---QVAP-PQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH--EAA   72 (243)
Q Consensus         5 ~~~~~~~a~~~~~~~------~~~~~~~~---~~p~-~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~--e~v   72 (243)
                      .+..++|.+++.+..      +.|++++.   +.|. +++||||||+.++++|+.|...+.+.......|.++|+  |++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~~~~p~~~G~~~~~~   83 (348)
T PLN03154          4 GQVVENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDSYLPPFVPGQRIEGF   83 (348)
T ss_pred             CccccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCCCCCCcCCCCeeEee
Confidence            455678888886432      11888773   5653 48999999999999999987654432222245789998  889


Q ss_pred             EEEEEeCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeE
Q 026087           73 GIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQY  152 (243)
Q Consensus        73 G~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~  152 (243)
                      |+|..+|++++.|++||+|...                                                    ++|+||
T Consensus        84 G~v~~vg~~v~~~~~Gd~V~~~----------------------------------------------------~~~aey  111 (348)
T PLN03154         84 GVSKVVDSDDPNFKPGDLISGI----------------------------------------------------TGWEEY  111 (348)
T ss_pred             EEEEEEecCCCCCCCCCEEEec----------------------------------------------------CCcEEE
Confidence            9999999999999999999621                                                    279999


Q ss_pred             EEeccce--eE--EcCCCCChh-hhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEc
Q 026087          153 TVVHDVS--VA--KIDPQAPLD-KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID  226 (243)
Q Consensus       153 ~~~~~~~--~~--~lp~~~~~~-~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~  226 (243)
                      ..++...  ++  ++|++++++ +++.++++..|||+++....++++|++|||+|+ |++|++++|+|+.+|+ +|++++
T Consensus       112 ~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~  190 (348)
T PLN03154        112 SLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSA  190 (348)
T ss_pred             EEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEc
Confidence            9888743  54  458999986 688899999999998878888999999999998 9999999999999999 899999


Q ss_pred             CChhHHHHHH-HhcccC
Q 026087          227 IDPKKFDRVL-NALAMS  242 (243)
Q Consensus       227 ~~~~~~~~~~-~~Ga~~  242 (243)
                      ++++|.++++ ++|++.
T Consensus       191 ~~~~k~~~~~~~lGa~~  207 (348)
T PLN03154        191 GSSQKVDLLKNKLGFDE  207 (348)
T ss_pred             CCHHHHHHHHHhcCCCE
Confidence            9999999987 799864

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.95  E-value=3.9e-26  Score=198.15  Aligned_cols=183  Identities=25%  Similarity=0.271  Sum_probs=160.6

Q ss_pred             ceeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcC
Q 026087            9 TCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEV   85 (243)
Q Consensus         9 ~~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~   85 (243)
                      ||||+++.+.+..  +++++.+.|.+.++||+|||.++++|+.|.....+..+. ...|.++|||++|+|+++|++++++
T Consensus         1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~   80 (334)
T PTZ00354          1 MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRF   80 (334)
T ss_pred             CcEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence            6999999988753  677788888889999999999999999999998876532 3456789999999999999999999


Q ss_pred             CCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCC
Q 026087           86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (243)
Q Consensus        86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~  165 (243)
                      ++||+|+...                                                 .+|+|++|+.++.+.++++|+
T Consensus        81 ~~Gd~V~~~~-------------------------------------------------~~g~~~~~~~v~~~~~~~ip~  111 (334)
T PTZ00354         81 KEGDRVMALL-------------------------------------------------PGGGYAEYAVAHKGHVMHIPQ  111 (334)
T ss_pred             CCCCEEEEec-------------------------------------------------CCCceeeEEEecHHHcEeCCC
Confidence            9999997421                                                 013899999999999999999


Q ss_pred             CCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      ++++.+++.+.+++.+||+++.....+++|++|+|+|+ |.+|++++++|+++|+ +++.+.+++++.+.++++|++
T Consensus       112 ~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~  187 (334)
T PTZ00354        112 GYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGA-ATIITTSSEEKVDFCKKLAAI  187 (334)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCc
Confidence            99999999999999999998877788999999999986 9999999999999999 777788899999999888875

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=99.95  E-value=3.5e-26  Score=198.78  Aligned_cols=162  Identities=20%  Similarity=0.236  Sum_probs=141.2

Q ss_pred             eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCCEEeeecccCCCC
Q 026087           22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRE  101 (243)
Q Consensus        22 ~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~  101 (243)
                      ++++|.+.|.|++|||||||.++++|+.|.   .|.+.....|.++|.|++|+|++.|+   +|++||+|+..       
T Consensus        19 l~~~~~~~p~~~~~evlv~v~a~~~n~~~~---~g~~~~~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~-------   85 (325)
T TIGR02825        19 FELKTVELPPLNNGEVLLEALFLSVDPYMR---VAAKRLKEGDTMMGQQVARVVESKNV---ALPKGTIVLAS-------   85 (325)
T ss_pred             eEEEeccCCCCCCCcEEEEEEEEecCHHHh---cccCcCCCCCcEecceEEEEEEeCCC---CCCCCCEEEEe-------
Confidence            888999999999999999999999999764   34333334578999999999999874   59999999731       


Q ss_pred             CccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEc----CCCCChhhh-hhcc
Q 026087          102 CKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI----DPQAPLDKV-CLLG  176 (243)
Q Consensus       102 c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l----p~~~~~~~a-a~l~  176 (243)
                                                                   ++|++|+.++.+.++++    |++++++++ ++++
T Consensus        86 ---------------------------------------------~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~  120 (325)
T TIGR02825        86 ---------------------------------------------PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVG  120 (325)
T ss_pred             ---------------------------------------------cCceeeEEechhheEEccccccCCCCHHHHHHhcc
Confidence                                                         15889999998887777    899999987 6788


Q ss_pred             cccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          177 CGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       177 ~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++.|||+++....++++|++|||+|+ |.+|++++|+|+.+|+ +|+++++++++.++++++|++.
T Consensus       121 ~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~lGa~~  186 (325)
T TIGR02825       121 MPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKKLGFDV  186 (325)
T ss_pred             cHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCE
Confidence            899999998888899999999999986 9999999999999999 8999999999999999999863

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.94  E-value=7.8e-26  Score=196.41  Aligned_cols=180  Identities=27%  Similarity=0.258  Sum_probs=158.9

Q ss_pred             ceeEEEEecCCC----CeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCC
Q 026087            9 TCKAAVAWEPNK----PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVT   83 (243)
Q Consensus         9 ~~~a~~~~~~~~----~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~   83 (243)
                      +|||+++.+++.    ++++++++.|.+.++|++|||.++++|+.|+....|.... ..+|.++|||++|+|+.+|++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~   80 (329)
T cd08250           1 SFRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVT   80 (329)
T ss_pred             CceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCC
Confidence            489999998765    4899999999999999999999999999999998886542 36788999999999999999999


Q ss_pred             cCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEc
Q 026087           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (243)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l  163 (243)
                      .+++||+|+...                                                  .|+|++|+.++.+.++++
T Consensus        81 ~~~~Gd~V~~~~--------------------------------------------------~g~~~s~~~v~~~~~~~i  110 (329)
T cd08250          81 DFKVGDAVATMS--------------------------------------------------FGAFAEYQVVPARHAVPV  110 (329)
T ss_pred             CCCCCCEEEEec--------------------------------------------------CcceeEEEEechHHeEEC
Confidence            999999997431                                                  138999999999999999


Q ss_pred             CCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      |++  ..+++.+..++.+||+++.....+.++++|+|+|+ |.+|.+++++++.+|+ +|+++.+++++.+.++++|++
T Consensus       111 p~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~  186 (329)
T cd08250         111 PEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGC-HVIGTCSSDEKAEFLKSLGCD  186 (329)
T ss_pred             CCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCC-eEEEEeCcHHHHHHHHHcCCc
Confidence            987  34677788899999998877788999999999986 9999999999999999 799998899999999888874

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=4.8e-26  Score=191.40  Aligned_cols=180  Identities=35%  Similarity=0.491  Sum_probs=157.2

Q ss_pred             cEEEEEeEEecChhhHHhhcCCCC-CCCCCeeeeeceEEEEEEeCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCC
Q 026087           36 EVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCG  114 (243)
Q Consensus        36 evlVkv~a~~i~~~D~~~~~g~~~-~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~  114 (243)
                      ||+|||.++++|+.|+..+.+..+ ...+|.++|||++|+|+++|++++.|++||+|+..+...|+.|.+|..    .|.
T Consensus         1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~----~~~   76 (271)
T cd05188           1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRE----LCP   76 (271)
T ss_pred             CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHh----hCC
Confidence            689999999999999999988764 335678999999999999999999999999999999999999999997    565


Q ss_pred             CccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCC
Q 026087          115 KVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEP  194 (243)
Q Consensus       115 ~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~  194 (243)
                      ....   .+                   ....|+|++|+.++.+.++++|+++++.+++.++.++.+||+++.....+++
T Consensus        77 ~~~~---~~-------------------~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~  134 (271)
T cd05188          77 GGGI---LG-------------------EGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKP  134 (271)
T ss_pred             CCCE---ec-------------------cccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCC
Confidence            4332   11                   1123489999999999999999999999999999999999998877777799


Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++|||+|+|.+|++++++++.+|. +|+++++++++.+.++++|++.
T Consensus       135 ~~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~  181 (271)
T cd05188         135 GDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKELGADH  181 (271)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCce
Confidence            9999999986699999999999998 8999999999999998888653

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.94  E-value=5.3e-26  Score=199.06  Aligned_cols=184  Identities=24%  Similarity=0.253  Sum_probs=156.8

Q ss_pred             eeEEEEecCCCC---eEEEeeccCCC-CCCcEEEEEeEEecChhhHHhhcCCCC---------------CCCCCeeeeec
Q 026087           10 CKAAVAWEPNKP---LVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDP---------------EGLFPCILGHE   70 (243)
Q Consensus        10 ~~a~~~~~~~~~---~~~~~~~~p~~-~~~evlVkv~a~~i~~~D~~~~~g~~~---------------~~~~p~~~G~e   70 (243)
                      |||+++.+++++   ++++|.+.|.| .++||+||++++++|++|+.++.+...               ...+|.++|||
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e   80 (350)
T cd08248           1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD   80 (350)
T ss_pred             CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence            688998887775   88999999999 499999999999999999999877421               23568899999


Q ss_pred             eEEEEEEeCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCccee
Q 026087           71 AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFS  150 (243)
Q Consensus        71 ~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~  150 (243)
                      ++|+|+.+|+++++|++||+|+..+.                                              .+..|+|+
T Consensus        81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~----------------------------------------------~~~~g~~~  114 (350)
T cd08248          81 CSGVVVDIGSGVKSFEIGDEVWGAVP----------------------------------------------PWSQGTHA  114 (350)
T ss_pred             eEEEEEecCCCcccCCCCCEEEEecC----------------------------------------------CCCCccce
Confidence            99999999999999999999985431                                              01123899


Q ss_pred             eEEEeccceeEEcCCCCChhhhhhcccccchhhhhhhhcCCCC----CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEE
Q 026087          151 QYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVE----PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI  225 (243)
Q Consensus       151 ~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~----~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~  225 (243)
                      +|+.++.+.++++|+++++.+++.+.+.+.++|+++.....+.    +|++|+|+|+ |.+|++++++++.+|+ +|+++
T Consensus       115 ~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~  193 (350)
T cd08248         115 EYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGA-HVTTT  193 (350)
T ss_pred             eEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEE
Confidence            9999999999999999999999999999999999876766664    4999999986 9999999999999999 78887


Q ss_pred             cCChhHHHHHHHhccc
Q 026087          226 DIDPKKFDRVLNALAM  241 (243)
Q Consensus       226 ~~~~~~~~~~~~~Ga~  241 (243)
                      .++ ++.++++++|++
T Consensus       194 ~~~-~~~~~~~~~g~~  208 (350)
T cd08248         194 CST-DAIPLVKSLGAD  208 (350)
T ss_pred             eCc-chHHHHHHhCCc
Confidence            654 677888888864

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.94  E-value=8.2e-26  Score=196.68  Aligned_cols=185  Identities=22%  Similarity=0.255  Sum_probs=160.1

Q ss_pred             eeEEEEecCCCC-----eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCc
Q 026087           10 CKAAVAWEPNKP-----LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE   84 (243)
Q Consensus        10 ~~a~~~~~~~~~-----~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~   84 (243)
                      |||+++.+++.+     +++++++.|.+.+++|+||+.++++|+.|+..+.+..+..++|.++|||++|+|+++|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~   80 (336)
T cd08252           1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPKILGWDASGVVEAVGSEVTL   80 (336)
T ss_pred             CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCCCCCCcccccceEEEEEEcCCCCCC
Confidence            579999988764     666778888889999999999999999999988876654456778999999999999999999


Q ss_pred             CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (243)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp  164 (243)
                      |++||+|.....                            ...                  .|+|++|+.++...++++|
T Consensus        81 ~~~Gd~V~~~~~----------------------------~~~------------------~g~~~~~~~v~~~~~~~ip  114 (336)
T cd08252          81 FKVGDEVYYAGD----------------------------ITR------------------PGSNAEYQLVDERIVGHKP  114 (336)
T ss_pred             CCCCCEEEEcCC----------------------------CCC------------------CccceEEEEEchHHeeeCC
Confidence            999999974311                            001                  1389999999999999999


Q ss_pred             CCCChhhhhhcccccchhhhhhhhcCCCCC-----CCEEEEEcC-CHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHH
Q 026087          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEP-----GSIVAVFGL-GTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~-----g~~vlV~G~-g~~G~~a~~~a~~~G-~~~vi~~~~~~~~~~~~~~  237 (243)
                      +++++++++.+++.+.++|.++.....+.+     |++|+|+|+ |.+|++++++++.+| + +|+++++++++.+++++
T Consensus       115 ~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~-~v~~~~~~~~~~~~~~~  193 (336)
T cd08252         115 KSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGL-TVIATASRPESIAWVKE  193 (336)
T ss_pred             CCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCc-EEEEEcCChhhHHHHHh
Confidence            999999999999999999998777777777     999999986 999999999999999 7 89999999999999998


Q ss_pred             hccc
Q 026087          238 ALAM  241 (243)
Q Consensus       238 ~Ga~  241 (243)
                      +|++
T Consensus       194 ~g~~  197 (336)
T cd08252         194 LGAD  197 (336)
T ss_pred             cCCc
Confidence            8875

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.94  E-value=1.2e-25  Score=193.67  Aligned_cols=186  Identities=27%  Similarity=0.383  Sum_probs=159.9

Q ss_pred             eeEEEEecCCC--CeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCC
Q 026087           10 CKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (243)
Q Consensus        10 ~~a~~~~~~~~--~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~   87 (243)
                      ||++++.+.+.  .+.+.+.+.|.++++||+||+.++++|+.|+..+.+..+....|.++|||++|+|+++|+  ..+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~--~~~~~   78 (320)
T cd08243           1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLGIEAVGEVEEAPG--GTFTP   78 (320)
T ss_pred             CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCccccceeEEEEEEecC--CCCCC
Confidence            57888877664  367778888888999999999999999999999988765556678999999999999995  57999


Q ss_pred             CCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCC
Q 026087           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (243)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~  167 (243)
                      ||+|+.....                        +|.                   ...|+|++|+.++...++++|+++
T Consensus        79 Gd~V~~~~~~------------------------~~~-------------------~~~g~~~~~~~~~~~~~~~ip~~~  115 (320)
T cd08243          79 GQRVATAMGG------------------------MGR-------------------TFDGSYAEYTLVPNEQVYAIDSDL  115 (320)
T ss_pred             CCEEEEecCC------------------------CCC-------------------CCCcccceEEEcCHHHcEeCCCCC
Confidence            9999864210                        000                   012389999999999999999999


Q ss_pred             ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      ++.+++.+.+++.+||.++.....+.+|++|||+|+ |.+|++++++|+.+|+ +|+++..++++.+.++++|++
T Consensus       116 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~  189 (320)
T cd08243         116 SWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGA-TVTATTRSPERAALLKELGAD  189 (320)
T ss_pred             CHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCc
Confidence            999999999999999998888888999999999987 9999999999999999 799999999999999989875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.94  E-value=5.3e-26  Score=198.87  Aligned_cols=188  Identities=31%  Similarity=0.343  Sum_probs=158.3

Q ss_pred             eeEEEEecCC-CCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087           10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (243)
Q Consensus        10 ~~a~~~~~~~-~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G   88 (243)
                      |||+++..++ ..+++++++.|.++++||+||++++++|++|+....+.. ....|.++|||++|+|+.+|++++.|++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~-~~~~~~~~g~e~~G~v~~vG~~v~~~~~G   79 (339)
T cd08249           1 QKAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGF-IPSYPAILGCDFAGTVVEVGSGVTRFKVG   79 (339)
T ss_pred             CceEEeccCCCCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeeccc-ccCCCceeeeeeeEEEEEeCCCcCcCCCC
Confidence            6899999884 338899999999999999999999999999988775544 12356789999999999999999999999


Q ss_pred             CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCC
Q 026087           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (243)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~  168 (243)
                      |+|+......|+                      +                   ..+.|+|++|+.++...++++|++++
T Consensus        80 d~V~~~~~~~~~----------------------~-------------------~~~~g~~~~~~~v~~~~~~~ip~~~~  118 (339)
T cd08249          80 DRVAGFVHGGNP----------------------N-------------------DPRNGAFQEYVVADADLTAKIPDNIS  118 (339)
T ss_pred             CEEEEEeccccC----------------------C-------------------CCCCCcccceEEechhheEECCCCCC
Confidence            999865432111                      0                   01134899999999999999999999


Q ss_pred             hhhhhhcccccchhhhhhhhcCCC----------CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          169 LDKVCLLGCGVPTGLGAVWNTAKV----------EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~----------~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      +.+++.+++.+.++|+++.....+          +++++|+|+|+ |.+|++++++|+++|+ +|+++. +++|.+.+++
T Consensus       119 ~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~-~v~~~~-~~~~~~~~~~  196 (339)
T cd08249         119 FEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITTA-SPKNFDLVKS  196 (339)
T ss_pred             HHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCC-eEEEEE-CcccHHHHHh
Confidence            999999999999999987665544          78999999997 9999999999999999 788876 5688899998


Q ss_pred             hccc
Q 026087          238 ALAM  241 (243)
Q Consensus       238 ~Ga~  241 (243)
                      +|++
T Consensus       197 ~g~~  200 (339)
T cd08249         197 LGAD  200 (339)
T ss_pred             cCCC
Confidence            9875

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=1.9e-25  Score=191.71  Aligned_cols=177  Identities=20%  Similarity=0.182  Sum_probs=153.4

Q ss_pred             eeEEEEecCC-CCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087           10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (243)
Q Consensus        10 ~~a~~~~~~~-~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G   88 (243)
                      ||++++.+++ ..+++++.+.|.+.++|++||+.++++|+.|.......    ..|.++|||++|+|+++|+++..|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~----~~~~~~g~e~~G~v~~~G~~v~~~~~G   76 (305)
T cd08270           1 MRALVVDPDAPLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER----PDGAVPGWDAAGVVERAAADGSGPAVG   76 (305)
T ss_pred             CeEEEEccCCCceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC----CCCCcccceeEEEEEEeCCCCCCCCCC
Confidence            5788887754 12777789999999999999999999999999877622    235689999999999999999999999


Q ss_pred             CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCC
Q 026087           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (243)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~  168 (243)
                      |+|....                               .                  .|+|++|+.++.+.++++|++++
T Consensus        77 d~V~~~~-------------------------------~------------------~g~~~~~~~v~~~~~~~ip~~~~  107 (305)
T cd08270          77 ARVVGLG-------------------------------A------------------MGAWAELVAVPTGWLAVLPDGVS  107 (305)
T ss_pred             CEEEEec-------------------------------C------------------CcceeeEEEEchHHeEECCCCCC
Confidence            9997431                               0                  13899999999999999999999


Q ss_pred             hhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +.+++.+++.+.|||+++...... +|++++|+|+ |.+|.+++++++.+|+ +|+++++++++.+.++++|++
T Consensus       108 ~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~  179 (305)
T cd08270         108 FAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLAALAGA-HVVAVVGSPARAEGLRELGAA  179 (305)
T ss_pred             HHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCc
Confidence            999999999999999987655544 5999999988 9999999999999999 899999999999999999874

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.94  E-value=1.5e-25  Score=194.30  Aligned_cols=186  Identities=20%  Similarity=0.212  Sum_probs=153.2

Q ss_pred             eeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCC-CCCCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-PEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (243)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~-~~~~~p~~~G~e~vG~V~~~G~~~~~~~   86 (243)
                      |||+++.+++.+  +.+++.+.|.+.++||+||+.++++|++|.....+.. ....+|.++|||++|+|++.|  +.+|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~   78 (326)
T cd08289           1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFK   78 (326)
T ss_pred             CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCC
Confidence            789999988764  7889999999999999999999999999987665322 122457899999999999954  46799


Q ss_pred             CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (243)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  166 (243)
                      +||+|+..+..                        .|.. .                  .|+|++|+.++.+.++++|++
T Consensus        79 ~Gd~V~~~~~~------------------------~~~~-~------------------~g~~~~~~~v~~~~~~~~p~~  115 (326)
T cd08289          79 PGDEVIVTSYD------------------------LGVS-H------------------HGGYSEYARVPAEWVVPLPKG  115 (326)
T ss_pred             CCCEEEEcccc------------------------cCCC-C------------------CCcceeEEEEcHHHeEECCCC
Confidence            99999864320                        1111 1                  238999999999999999999


Q ss_pred             CChhhhhhcccccchhhhhhhhc--CC-CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNT--AK-VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~--~~-~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +++++++.++++..||+.++...  .. ..++++|||+|+ |.+|.+++++|+.+|+ +|+++++++++.++++++|++
T Consensus       116 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~  193 (326)
T cd08289         116 LTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGY-EVVASTGKADAADYLKKLGAK  193 (326)
T ss_pred             CCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCC
Confidence            99999999999999998876432  22 345789999998 9999999999999999 899999999999999999875

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.94  E-value=2.4e-25  Score=192.62  Aligned_cols=183  Identities=30%  Similarity=0.361  Sum_probs=157.9

Q ss_pred             eeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC---CCCCeeeeeceEEEEEEeCCCCCc
Q 026087           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE---GLFPCILGHEAAGIVESVGEGVTE   84 (243)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~---~~~p~~~G~e~vG~V~~~G~~~~~   84 (243)
                      |||+++.+++.+  +++.+.+.|.+.+++|+||+.++++|+.|+..+.|..+.   ...|.++|||++|+|+++|+++..
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~   80 (324)
T cd08244           1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP   80 (324)
T ss_pred             CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence            689998876543  677787777789999999999999999999998876432   345788999999999999999999


Q ss_pred             CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (243)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp  164 (243)
                      +++||+|+....                             ..+                  |+|++|+.++...++++|
T Consensus        81 ~~~Gd~V~~~~~-----------------------------~~~------------------g~~~~~~~v~~~~~~~lp  113 (324)
T cd08244          81 AWLGRRVVAHTG-----------------------------RAG------------------GGYAELAVADVDSLHPVP  113 (324)
T ss_pred             CCCCCEEEEccC-----------------------------CCC------------------ceeeEEEEEchHHeEeCC
Confidence            999999975421                             012                  389999999999999999


Q ss_pred             CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +++++.+++.+.+.+.|+|. +.....++++++|+|+|+ |.+|.+++++|+.+|+ +|+++++++++.+.++++|++
T Consensus       114 ~~~~~~~a~~~~~~~~ta~~-~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~  189 (324)
T cd08244         114 DGLDLEAAVAVVHDGRTALG-LLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGA-TVVGAAGGPAKTALVRALGAD  189 (324)
T ss_pred             CCCCHHHHhhhcchHHHHHH-HHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCC
Confidence            99999999999999999954 667788999999999986 9999999999999999 899999999999999888875

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.94  E-value=2.7e-25  Score=192.51  Aligned_cols=185  Identities=25%  Similarity=0.261  Sum_probs=154.7

Q ss_pred             eEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCCC
Q 026087           11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQP   87 (243)
Q Consensus        11 ~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~~   87 (243)
                      ||+++...+.+  ++++++|.|.+.++||+||++++++|+.|+..+.|.++. ...|.++|||++|+|+.  +++..|++
T Consensus         1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~   78 (323)
T TIGR02823         1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFRE   78 (323)
T ss_pred             CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCC
Confidence            67888877664  789999999999999999999999999999999887532 24588999999999998  55678999


Q ss_pred             CCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCC
Q 026087           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (243)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~  167 (243)
                      ||+|+..+..                        .|.. .                  .|++++|+.++.+.++++|+++
T Consensus        79 Gd~V~~~~~~------------------------~~~~-~------------------~g~~~~~~~~~~~~~~~iP~~~  115 (323)
T TIGR02823        79 GDEVIVTGYG------------------------LGVS-H------------------DGGYSQYARVPADWLVPLPEGL  115 (323)
T ss_pred             CCEEEEccCC------------------------CCCC-C------------------CccceEEEEEchhheEECCCCC
Confidence            9999864310                        1110 1                  2389999999999999999999


Q ss_pred             Chhhhhhcccccchhhhhhhhc--CCCCCCC-EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          168 PLDKVCLLGCGVPTGLGAVWNT--AKVEPGS-IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~--~~~~~g~-~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      ++.+++.+.+...+++.++...  ..+.+++ +|+|+|+ |.+|.+++++|+.+|+ ++++++.++++.+.++++|++
T Consensus       116 ~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~-~vi~~~~~~~~~~~~~~~g~~  192 (323)
T TIGR02823       116 SLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGY-EVVASTGKAEEEDYLKELGAS  192 (323)
T ss_pred             CHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHhcCCc
Confidence            9999999998888888765433  3478898 9999997 9999999999999999 788888888888999989875

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.94  E-value=2.8e-25  Score=192.43  Aligned_cols=187  Identities=20%  Similarity=0.211  Sum_probs=155.4

Q ss_pred             eeEEEEecCCC--CeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087           10 CKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (243)
Q Consensus        10 ~~a~~~~~~~~--~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~   86 (243)
                      |||+++.+++.  .+++++.|.|.|+++||+||+.++++|+.|...+.+.... ..+|.++|||++|+|++  +++++++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~   78 (324)
T cd08288           1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFK   78 (324)
T ss_pred             CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCC
Confidence            78999998775  3889999999999999999999999999999988876532 24578899999999999  7777899


Q ss_pred             CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (243)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  166 (243)
                      +||+|+.....                        .|                   .+..|+|++|+.++.+.++++|++
T Consensus        79 ~Gd~V~~~~~~------------------------~~-------------------~~~~g~~~~~~~v~~~~~~~lp~~  115 (324)
T cd08288          79 PGDRVVLTGWG------------------------VG-------------------ERHWGGYAQRARVKADWLVPLPEG  115 (324)
T ss_pred             CCCEEEECCcc------------------------CC-------------------CCCCCcceeEEEEchHHeeeCCCC
Confidence            99999853210                        00                   011248999999999999999999


Q ss_pred             CChhhhhhcccccchhhhhhh--hcCCCC-CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          167 APLDKVCLLGCGVPTGLGAVW--NTAKVE-PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~--~~~~~~-~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++++++.+.+.+.+++.++.  ...... ++++|||+|+ |.+|.+++|+|+.+|+ +|++++++++|.++++++|++.
T Consensus       116 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~-~vi~~~~~~~~~~~~~~~g~~~  194 (324)
T cd08288         116 LSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGY-EVVASTGRPEEADYLRSLGASE  194 (324)
T ss_pred             CCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCE
Confidence            999999999988888876543  123444 6789999998 9999999999999999 8999989999999999999853

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.93  E-value=8.7e-25  Score=189.74  Aligned_cols=181  Identities=24%  Similarity=0.310  Sum_probs=160.0

Q ss_pred             eeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (243)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~   86 (243)
                      .||+++..++.+  +++++.+.|.|.++||+||+.++++|+.|+.++.+.... ..+|.++|||++|+|+.+|+++..|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~   80 (331)
T cd08273           1 NREVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFE   80 (331)
T ss_pred             CeeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCC
Confidence            378888887754  888999999999999999999999999999998887543 25688999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (243)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  166 (243)
                      +||+|.....                                                 .|+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~-------------------------------------------------~g~~~~~~~~~~~~~~~~p~~  111 (331)
T cd08273          81 VGDRVAALTR-------------------------------------------------VGGNAEYINLDAKYLVPVPEG  111 (331)
T ss_pred             CCCEEEEeCC-------------------------------------------------CcceeeEEEechHHeEECCCC
Confidence            9999975321                                                 128999999999999999999


Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      ++..+++.+.++..++|+++.....+++|++|+|+|+ |.+|++++++++.+|+ +|+++.. +++.++++++|++
T Consensus       112 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~~  185 (331)
T cd08273         112 VDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGA-EVYGTAS-ERNHAALRELGAT  185 (331)
T ss_pred             CCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeC-HHHHHHHHHcCCe
Confidence            9999999999999999998877788999999999997 9999999999999999 8888877 8888998888853

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.93  E-value=2.1e-24  Score=185.26  Aligned_cols=182  Identities=29%  Similarity=0.333  Sum_probs=159.0

Q ss_pred             eeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (243)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~   86 (243)
                      ||++++.+.+.+  +++.+.+.|.+.+++++||+.++++|+.|+....+..+. ..+|.++|||++|+|+.+|+++..++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~   80 (323)
T cd05276           1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWK   80 (323)
T ss_pred             CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCC
Confidence            689999876543  778888888889999999999999999999988776532 24678999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (243)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  166 (243)
                      +||+|....                               .                  .|+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~-------------------------------~------------------~g~~~~~~~~~~~~~~~~p~~  111 (323)
T cd05276          81 VGDRVCALL-------------------------------A------------------GGGYAEYVVVPAGQLLPVPEG  111 (323)
T ss_pred             CCCEEEEec-------------------------------C------------------CCceeEEEEcCHHHhccCCCC
Confidence            999997431                               0                  138999999999999999999


Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +++.+++.+.....++|+++.....+.++++++|+|+ |.+|++++++++.+|+ +++++++++++.+.++++|++
T Consensus       112 ~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~  186 (323)
T cd05276         112 LSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGA-RVIATAGSEEKLEACRALGAD  186 (323)
T ss_pred             CCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCC
Confidence            9999999999899999998877788999999999997 9999999999999999 799999998898888887754

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.93  E-value=2.2e-24  Score=185.50  Aligned_cols=187  Identities=30%  Similarity=0.391  Sum_probs=161.9

Q ss_pred             eeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC-CCCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTEVQ   86 (243)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~-~~~~p~~~G~e~vG~V~~~G~~~~~~~   86 (243)
                      ||++++.+++.+  +.+.+++.|.+.+++|+|++.++++|++|+..+.+... ....|.++|||++|+|+++|+++.+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~   80 (325)
T cd08253           1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLK   80 (325)
T ss_pred             CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCC
Confidence            578888876543  88889999999999999999999999999998877653 235788999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (243)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  166 (243)
                      +||+|+....                          |....                  .|++++|+.++.+.++++|++
T Consensus        81 ~Gd~v~~~~~--------------------------~~~~~------------------~g~~~~~~~~~~~~~~~ip~~  116 (325)
T cd08253          81 VGDRVWLTNL--------------------------GWGRR------------------QGTAAEYVVVPADQLVPLPDG  116 (325)
T ss_pred             CCCEEEEecc--------------------------ccCCC------------------CcceeeEEEecHHHcEeCCCC
Confidence            9999986532                          00001                  238999999999999999999


Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      ++..+++.+.++..++|+++.....+.+|++++|+|+ +.+|.+++++++.+|+ +|+++++++++.+.+.++|++
T Consensus       117 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~  191 (325)
T cd08253         117 VSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVRQAGAD  191 (325)
T ss_pred             CCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCC
Confidence            9999999999999999998877788999999999987 9999999999999999 899999999999998888865

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.93  E-value=3e-24  Score=185.37  Aligned_cols=184  Identities=29%  Similarity=0.376  Sum_probs=159.8

Q ss_pred             eeEEEEecCC--CCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCC
Q 026087           10 CKAAVAWEPN--KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (243)
Q Consensus        10 ~~a~~~~~~~--~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~   87 (243)
                      |||+++.+++  +.+++++.|.|.+.+++|+||+.++++|++|+....+.......|.++|||++|+|+.+|++++.+++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~   80 (325)
T cd08271           1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVPGVDGAGVVVAVGAKVTGWKV   80 (325)
T ss_pred             CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCcccccceEEEEEEeCCCCCcCCC
Confidence            6899999988  35999999999999999999999999999999988776543334678999999999999999999999


Q ss_pred             CCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCC
Q 026087           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (243)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~  167 (243)
                      ||+|......                                              ...++|++|+.++.+.++++|+++
T Consensus        81 Gd~V~~~~~~----------------------------------------------~~~~~~~s~~~~~~~~~~~ip~~~  114 (325)
T cd08271          81 GDRVAYHASL----------------------------------------------ARGGSFAEYTVVDARAVLPLPDSL  114 (325)
T ss_pred             CCEEEeccCC----------------------------------------------CCCccceeEEEeCHHHeEECCCCC
Confidence            9999854210                                              012389999999999999999999


Q ss_pred             ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      ++.+++.+.+...++|+++.....+++|++++|+|+ |.+|++++++++.+|+ +|+++. ++++.+.+.++|++
T Consensus       115 ~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~-~v~~~~-~~~~~~~~~~~g~~  187 (325)
T cd08271         115 SFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGL-RVITTC-SKRNFEYVKSLGAD  187 (325)
T ss_pred             CHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEE-cHHHHHHHHHcCCc
Confidence            999999999999999998878888999999999998 8999999999999999 788775 67777888888765

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.93  E-value=2.4e-24  Score=189.12  Aligned_cols=187  Identities=24%  Similarity=0.241  Sum_probs=153.7

Q ss_pred             eeEEEEecCCCCeEEEeeccCCC---CCCcEEEEEeEEecChhhHHhhcCCCCCCC-CCeeeeeceEEEEEEeCCCCC-c
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPP---QAGEVRIKILFTALCHTDAYTWSGKDPEGL-FPCILGHEAAGIVESVGEGVT-E   84 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~---~~~evlVkv~a~~i~~~D~~~~~g~~~~~~-~p~~~G~e~vG~V~~~G~~~~-~   84 (243)
                      .|++++.+.+.++++++++.|.|   ++++|+||+.++++|++|+..+.+...... .|.++|||++|+|+++|++++ .
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~   80 (352)
T cd08247           1 YKALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASE   80 (352)
T ss_pred             CceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccC
Confidence            36899999988888888888776   899999999999999999988764332222 377899999999999999998 8


Q ss_pred             CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc----ee
Q 026087           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV----SV  160 (243)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~  160 (243)
                      |++||+|+......|                                            .+.|+|++|+.++..    .+
T Consensus        81 ~~~Gd~V~~~~~~~~--------------------------------------------~~~g~~~~~~~v~~~~~~~~~  116 (352)
T cd08247          81 WKVGDEVCGIYPHPY--------------------------------------------GGQGTLSQYLLVDPKKDKKSI  116 (352)
T ss_pred             CCCCCEEEEeecCCC--------------------------------------------CCCceeeEEEEEcccccccee
Confidence            999999986532110                                            012389999999987    78


Q ss_pred             EEcCCCCChhhhhhcccccchhhhhhhhcC-CCCCCCEEEEEcC-CHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHH
Q 026087          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTA-KVEPGSIVAVFGL-GTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       161 ~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~-~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~-~~vi~~~~~~~~~~~~~~  237 (243)
                      +++|+++++.+++.++++..|+|+++.... .+++|++|+|+|+ +.+|.+++++|+++|. ++++++. ++++.+.+++
T Consensus       117 ~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~~~  195 (352)
T cd08247         117 TRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTC-SSRSAELNKK  195 (352)
T ss_pred             EECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEe-ChhHHHHHHH
Confidence            999999999999999999999999877666 7999999999988 7999999999999854 3677775 4555667788


Q ss_pred             hccc
Q 026087          238 ALAM  241 (243)
Q Consensus       238 ~Ga~  241 (243)
                      +|++
T Consensus       196 ~g~~  199 (352)
T cd08247         196 LGAD  199 (352)
T ss_pred             hCCC
Confidence            8875

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.92  E-value=4.1e-24  Score=184.81  Aligned_cols=171  Identities=23%  Similarity=0.321  Sum_probs=151.8

Q ss_pred             eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCCCCCEEeeecccCCC
Q 026087           22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECR  100 (243)
Q Consensus        22 ~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~  100 (243)
                      +++++.+.|.+.+++|+||++++++|+.|...+.+.... ..+|.++|||++|+|+.+|++++++++||+|+..+.    
T Consensus        14 ~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~----   89 (323)
T cd05282          14 LELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGG----   89 (323)
T ss_pred             EEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeCC----
Confidence            667788888899999999999999999999988776532 356789999999999999999999999999985421    


Q ss_pred             CCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCChhhhhhcccccc
Q 026087          101 ECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP  180 (243)
Q Consensus       101 ~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~  180 (243)
                                                 +                  |+|++|+.++.+.++++|+++++.+++.+.+...
T Consensus        90 ---------------------------~------------------g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~  124 (323)
T cd05282          90 ---------------------------E------------------GTWQEYVVAPADDLIPVPDSISDEQAAMLYINPL  124 (323)
T ss_pred             ---------------------------C------------------CcceeEEecCHHHeEECCCCCCHHHHHHHhccHH
Confidence                                       1                  2899999999999999999999999999988999


Q ss_pred             hhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          181 TGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       181 ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++|.++.....+.+|++|||+|+ |.+|.+++++|+++|+ +++++.+++++.+.++++|++.
T Consensus       125 ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~  186 (323)
T cd05282         125 TAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGF-KTINVVRRDEQVEELKALGADE  186 (323)
T ss_pred             HHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecChHHHHHHHhcCCCE
Confidence            99998877778899999999987 8999999999999999 8889888999999999888753

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.92  E-value=6.2e-24  Score=183.11  Aligned_cols=186  Identities=28%  Similarity=0.344  Sum_probs=159.4

Q ss_pred             eeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (243)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~   86 (243)
                      |||+++.+++.+  +++++.+.|.+.+++|+|++.++++|++|+.+..+.... ...|.++|||++|+|+.+|+++..|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (326)
T cd08272           1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFR   80 (326)
T ss_pred             CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Confidence            689999888765  788888888889999999999999999999988776432 24577899999999999999999999


Q ss_pred             CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (243)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  166 (243)
                      +||+|.....                          |+...                  .|+|++|+.++...++++|++
T Consensus        81 ~Gd~V~~~~~--------------------------~~~~~------------------~g~~~~~~~v~~~~~~~~p~~  116 (326)
T cd08272          81 VGDEVYGCAG--------------------------GLGGL------------------QGSLAEYAVVDARLLALKPAN  116 (326)
T ss_pred             CCCEEEEccC--------------------------CcCCC------------------CCceeEEEEecHHHcccCCCC
Confidence            9999985421                          00001                  238999999999999999999


Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +++.+++.+++...++|+++.+...+++|++++|+|+ |.+|++++++++.+|+ +|++++++ ++.+.++++|++
T Consensus       117 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~  190 (326)
T cd08272         117 LSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGA-RVYATASS-EKAAFARSLGAD  190 (326)
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEech-HHHHHHHHcCCC
Confidence            9999999998899999998778889999999999986 9999999999999999 88888887 888888888865

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.92  E-value=5.6e-24  Score=183.08  Aligned_cols=171  Identities=26%  Similarity=0.364  Sum_probs=144.1

Q ss_pred             cCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhh-cCCCCC--CCCCeeeeeceEEEEEEeCCCCCcCCCCCEEee
Q 026087           17 EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTW-SGKDPE--GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIP   93 (243)
Q Consensus        17 ~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~-~g~~~~--~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~V~~   93 (243)
                      +++. +++++++.|.+.++||+||+.++++|+.|+..+ .+....  +.+|.++|+|++|+|+++|++++++++||+|+.
T Consensus         3 ~~~~-~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~   81 (312)
T cd08269           3 GPGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAG   81 (312)
T ss_pred             CCCe-eEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEE
Confidence            3444 899999999999999999999999999999987 665422  234789999999999999999999999999985


Q ss_pred             ecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCChhhhh
Q 026087           94 CYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVC  173 (243)
Q Consensus        94 ~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa  173 (243)
                      ..                                                  .|+|++|+.++.+.++++|+++  ..++
T Consensus        82 ~~--------------------------------------------------~g~~~~~~~v~~~~~~~lP~~~--~~~~  109 (312)
T cd08269          82 LS--------------------------------------------------GGAFAEYDLADADHAVPLPSLL--DGQA  109 (312)
T ss_pred             ec--------------------------------------------------CCcceeeEEEchhheEECCCch--hhhH
Confidence            32                                                  1389999999999999999988  2233


Q ss_pred             hcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          174 LLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       174 ~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      .+..++.++++++. ...++++++|+|+|+|.+|.+++++|+.+|+++|+++.+++++.++++++|++
T Consensus       110 ~~~~~~~~a~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~  176 (312)
T cd08269         110 FPGEPLGCALNVFR-RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGAT  176 (312)
T ss_pred             HhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc
Confidence            22357778888764 78899999999998899999999999999994499999999999998888875

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.92  E-value=2.1e-23  Score=178.83  Aligned_cols=180  Identities=33%  Similarity=0.386  Sum_probs=156.0

Q ss_pred             eEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087           11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (243)
Q Consensus        11 ~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G   88 (243)
                      ||+.+..++.+  +.+.+.+.+.+.++|++|||.++++|+.|+....+..+. .+|.++|||++|+|+.+|+++.+|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~-~~~~~~g~e~~G~v~~~g~~~~~~~~G   79 (320)
T cd05286           1 KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL-PLPFVLGVEGAGVVEAVGPGVTGFKVG   79 (320)
T ss_pred             CeEEEecCCCccceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC-CCCccCCcceeEEEEEECCCCCCCCCC
Confidence            46666655543  667777777789999999999999999999998876543 457789999999999999999999999


Q ss_pred             CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCC
Q 026087           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (243)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~  168 (243)
                      |+|....                               .                  .|+|++|+.++.+.++++|++++
T Consensus        80 ~~V~~~~-------------------------------~------------------~g~~~~~~~~~~~~~~~~p~~~~  110 (320)
T cd05286          80 DRVAYAG-------------------------------P------------------PGAYAEYRVVPASRLVKLPDGIS  110 (320)
T ss_pred             CEEEEec-------------------------------C------------------CCceeEEEEecHHHceeCCCCCC
Confidence            9997431                               0                  12899999999999999999999


Q ss_pred             hhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      ..+++.+.+...++|.++.....+.+|++|+|+|+ |.+|.+++++++.+|+ +|++++.++++.+.++++|++
T Consensus       111 ~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~  183 (320)
T cd05286         111 DETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAELARAAGAD  183 (320)
T ss_pred             HHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHCCCC
Confidence            99999988899999998877788999999999996 9999999999999999 899999999999999888874

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.91  E-value=1.7e-23  Score=182.73  Aligned_cols=171  Identities=30%  Similarity=0.395  Sum_probs=140.6

Q ss_pred             eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCC----CCCeeeeeceEEEEEEeCCC----CCcCCCCCEEee
Q 026087           22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG----LFPCILGHEAAGIVESVGEG----VTEVQPGDHVIP   93 (243)
Q Consensus        22 ~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~----~~p~~~G~e~vG~V~~~G~~----~~~~~~Gd~V~~   93 (243)
                      ...++.+.|.|++++++|++.++++|+.|+.++.|.....    .+|.+++.++.|++..+.+.    +..+..||.+..
T Consensus        20 ~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~~   99 (347)
T KOG1198|consen   20 LFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVVA   99 (347)
T ss_pred             EEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccceEeeeEEee
Confidence            4557899999999999999999999999999999987554    47766665555553333322    223455554432


Q ss_pred             ecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCChhhhh
Q 026087           94 CYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVC  173 (243)
Q Consensus        94 ~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa  173 (243)
                                                                       ....|+|+||+++|...++++|+++++.++|
T Consensus       100 -------------------------------------------------~~~~g~~aey~v~p~~~~~~~P~~l~~~~aa  130 (347)
T KOG1198|consen  100 -------------------------------------------------FLSSGGLAEYVVVPEKLLVKIPESLSFEEAA  130 (347)
T ss_pred             -------------------------------------------------ccCCCceeeEEEcchhhccCCCCccChhhhh
Confidence                                                             2223499999999999999999999999999


Q ss_pred             hcccccchhhhhhhhcC------CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          174 LLGCGVPTGLGAVWNTA------KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       174 ~l~~~~~ta~~~~~~~~------~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++.++.|||.+++...      ++++|++|||+|+ |++|++++|+|+..|+ ..+.+.++++++++++++|||.
T Consensus       131 ~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~-~~v~t~~s~e~~~l~k~lGAd~  205 (347)
T KOG1198|consen  131 ALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGA-IKVVTACSKEKLELVKKLGADE  205 (347)
T ss_pred             cCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCC-cEEEEEcccchHHHHHHcCCcE
Confidence            99999999999999999      9999999999976 8999999999999996 4555668999999999999985

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.91  E-value=5.5e-23  Score=177.18  Aligned_cols=187  Identities=34%  Similarity=0.397  Sum_probs=158.9

Q ss_pred             eeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (243)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~   86 (243)
                      ||++++.+.+.+  +.+.+.+.|.+++++++|++.++++|+.|+.+..+.... ..+|.++|||++|+|+.+|+++..|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (328)
T cd08268           1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFA   80 (328)
T ss_pred             CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCC
Confidence            578888876543  677788888889999999999999999999888776432 24577899999999999999999999


Q ss_pred             CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (243)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  166 (243)
                      +||+|...+...                                            ....|++++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~--------------------------------------------~~~~g~~~~~~~~~~~~~~~~p~~  116 (328)
T cd08268          81 VGDRVSVIPAAD--------------------------------------------LGQYGTYAEYALVPAAAVVKLPDG  116 (328)
T ss_pred             CCCEEEeccccc--------------------------------------------cCCCccceEEEEechHhcEeCCCC
Confidence            999998653200                                            001238999999999999999999


Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +++.+++.+.+...++|.++.....+.++++++|+|+ |.+|.+++++++.+|+ +++.+++++++.+.++++|++
T Consensus       117 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~  191 (328)
T cd08268         117 LSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGA-TVIATTRTSEKRDALLALGAA  191 (328)
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCC
Confidence            9999999999999999998877888999999999987 9999999999999999 899999899898888877764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.91  E-value=3.7e-23  Score=176.83  Aligned_cols=183  Identities=28%  Similarity=0.341  Sum_probs=155.3

Q ss_pred             eeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC---CCCCCeeeeeceEEEEEEeCCCCCc
Q 026087           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTE   84 (243)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~---~~~~p~~~G~e~vG~V~~~G~~~~~   84 (243)
                      |||+++..++..  +.+++.+.|.++++||+||+.++++|+.|+..+.+...   ....|.++|||++|+|+.+|+++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~   80 (309)
T cd05289           1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG   80 (309)
T ss_pred             CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence            678888876653  56778888888999999999999999999999877642   2345789999999999999999999


Q ss_pred             CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (243)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp  164 (243)
                      +++||+|...+..                         +   .                  .|+|++|+.++...++++|
T Consensus        81 ~~~G~~V~~~~~~-------------------------~---~------------------~g~~~~~~~~~~~~~~~~p  114 (309)
T cd05289          81 FKVGDEVFGMTPF-------------------------T---R------------------GGAYAEYVVVPADELALKP  114 (309)
T ss_pred             CCCCCEEEEccCC-------------------------C---C------------------CCcceeEEEecHHHhccCC
Confidence            9999999854310                         0   1                  1389999999999999999


Q ss_pred             CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      +++++..++.+.+...++|.++.....+.++++|+|+|+ |.+|++++++++.+|+ +|++++.++ +.+.++++|+
T Consensus       115 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~-~~~~~~~~g~  189 (309)
T cd05289         115 ANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGA-RVIATASAA-NADFLRSLGA  189 (309)
T ss_pred             CCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEecch-hHHHHHHcCC
Confidence            999999999888889999998777777899999999997 9999999999999999 788887766 7888888875

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.91  E-value=9.3e-23  Score=175.52  Aligned_cols=182  Identities=29%  Similarity=0.320  Sum_probs=157.0

Q ss_pred             eeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (243)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~   86 (243)
                      ||++.+...+.+  +.+++.+.+.+++++++||+.++++|+.|+....+.+.. ..+|.++|||++|+|+.+|+++.+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~   80 (325)
T TIGR02824         1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWK   80 (325)
T ss_pred             CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCC
Confidence            578888776554  667777777789999999999999999999988776533 24578999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (243)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  166 (243)
                      +||+|+...                               .                  .|+|++|+.++...++++|++
T Consensus        81 ~Gd~V~~~~-------------------------------~------------------~~~~~~~~~~~~~~~~~ip~~  111 (325)
T TIGR02824        81 VGDRVCALV-------------------------------A------------------GGGYAEYVAVPAGQVLPVPEG  111 (325)
T ss_pred             CCCEEEEcc-------------------------------C------------------CCcceeEEEecHHHcEeCCCC
Confidence            999997431                               0                  128999999999999999999


Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +++.+++.+.++..++|.++.....++++++++|+|+ |.+|.+++++++.+|+ +|+++.+++++.+.++++|++
T Consensus       112 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~  186 (325)
T TIGR02824       112 LSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGA-RVFTTAGSDEKCAACEALGAD  186 (325)
T ss_pred             CCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCc
Confidence            9999999999999999998778889999999999987 9999999999999999 899998889888888877763

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.91  E-value=5.6e-24  Score=156.67  Aligned_cols=108  Identities=37%  Similarity=0.689  Sum_probs=93.1

Q ss_pred             CCcEEEEEeEEecChhhHHhhcCC-CCCCCCCeeeeeceEEEEEEeCCCCCcCCCCCEEeeecccCCCCCccccCCCCCC
Q 026087           34 AGEVRIKILFTALCHTDAYTWSGK-DPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNL  112 (243)
Q Consensus        34 ~~evlVkv~a~~i~~~D~~~~~g~-~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~  112 (243)
                      |+||||||++++||++|++++.+. .....+|.++|||++|+|+++|+++++|++||+|++.+...|+.|.+|..+.+++
T Consensus         1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~   80 (109)
T PF08240_consen    1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNL   80 (109)
T ss_dssp             TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGG
T ss_pred             CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcccc
Confidence            689999999999999999999994 4555899999999999999999999999999999999988999999999999999


Q ss_pred             CCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEc
Q 026087          113 CGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (243)
Q Consensus       113 c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l  163 (243)
                      |.....   +|+. .+|                  +|+||+.+|.+.++|+
T Consensus        81 c~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~v  109 (109)
T PF08240_consen   81 CPNPEV---LGLG-LDG------------------GFAEYVVVPARNLVPV  109 (109)
T ss_dssp             TTTBEE---TTTS-STC------------------SSBSEEEEEGGGEEEE
T ss_pred             CCCCCE---eEcC-CCC------------------cccCeEEEehHHEEEC
Confidence            977654   3332 344                  9999999999999875

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.90  E-value=9.1e-23  Score=175.64  Aligned_cols=171  Identities=29%  Similarity=0.359  Sum_probs=148.5

Q ss_pred             EEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC---CCCCeeeeeceEEEEEEeCCCCCcCCCCCEEeeecccCC
Q 026087           23 VIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE---GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAEC   99 (243)
Q Consensus        23 ~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~---~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~   99 (243)
                      ++++.+.|.+.++||+|+++++++|+.|+..+.+....   ...|.++|||++|+|+++|+++.++++||+|+.....  
T Consensus        15 ~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~--   92 (319)
T cd08267          15 LEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPP--   92 (319)
T ss_pred             ccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccC--
Confidence            77888999999999999999999999999998876521   2346789999999999999999999999999754320  


Q ss_pred             CCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCChhhhhhccccc
Q 026087          100 RECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV  179 (243)
Q Consensus       100 ~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~  179 (243)
                                             +   .                  .|+|++|+..+.+.++++|+++++.+++.+.+..
T Consensus        93 -----------------------~---~------------------~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~  128 (319)
T cd08267          93 -----------------------K---G------------------GGALAEYVVAPESGLAKKPEGVSFEEAAALPVAG  128 (319)
T ss_pred             -----------------------C---C------------------CceeeEEEEechhheEECCCCCCHHHHHhhhhHH
Confidence                                   0   1                  1389999999999999999999999999999999


Q ss_pred             chhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          180 PTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       180 ~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      .++|+++.....+++|++|+|+|+ |.+|++++++++.+|+ +|++++.+ ++.+.++++|++
T Consensus       129 ~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~-~v~~~~~~-~~~~~~~~~g~~  189 (319)
T cd08267         129 LTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGA-HVTGVCST-RNAELVRSLGAD  189 (319)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCH-HHHHHHHHcCCC
Confidence            999998877777999999999997 9999999999999999 88888764 788888888864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.90  E-value=3.4e-22  Score=173.42  Aligned_cols=177  Identities=23%  Similarity=0.214  Sum_probs=146.3

Q ss_pred             eeEEEEecCC------CCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC---CCCCCeeeeeceEEEEEEeCC
Q 026087           10 CKAAVAWEPN------KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGE   80 (243)
Q Consensus        10 ~~a~~~~~~~------~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~---~~~~p~~~G~e~vG~V~~~G~   80 (243)
                      .||+++.+.+      +.+++++++.|.+.+++|+||+.++++|+.|.....+...   +...+.++|+|++|+|+++|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~   81 (329)
T cd05288           2 NRQVVLAKRPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRS   81 (329)
T ss_pred             CcEEEEeccCCCCCCccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCC
Confidence            4677776543      1288999999999999999999999999988765554321   112345789999999999996


Q ss_pred             CCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEecc-ce
Q 026087           81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD-VS  159 (243)
Q Consensus        81 ~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~  159 (243)
                      +  +|++||+|+..                                                    ++|++|+.++. +.
T Consensus        82 ~--~~~~Gd~V~~~----------------------------------------------------~~~~~~~~v~~~~~  107 (329)
T cd05288          82 P--DFKVGDLVSGF----------------------------------------------------LGWQEYAVVDGASG  107 (329)
T ss_pred             C--CCCCCCEEecc----------------------------------------------------cceEEEEEecchhh
Confidence            4  79999999731                                                    16999999999 99


Q ss_pred             eEEcCCCCC--hhhhhh-cccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          160 VAKIDPQAP--LDKVCL-LGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       160 ~~~lp~~~~--~~~aa~-l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      ++++|++++  ..+++. +.++..++|+++.....+.++++|||+|+ |.+|++++++++.+|+ +|+++++++++.+.+
T Consensus       108 ~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~-~vi~~~~~~~~~~~~  186 (329)
T cd05288         108 LRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGIAGSDEKCRWL  186 (329)
T ss_pred             cEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            999999985  445545 88899999998877788999999999986 9999999999999999 899999999999999


Q ss_pred             HH-hccc
Q 026087          236 LN-ALAM  241 (243)
Q Consensus       236 ~~-~Ga~  241 (243)
                      ++ +|++
T Consensus       187 ~~~~g~~  193 (329)
T cd05288         187 VEELGFD  193 (329)
T ss_pred             HhhcCCc
Confidence            88 8875

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08251 polyketide_synthase polyketide synthase

Probab=99.90  E-value=2e-22  Score=171.93  Aligned_cols=164  Identities=26%  Similarity=0.346  Sum_probs=144.5

Q ss_pred             cCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCCCCCEEeeecccCCCCCccccC
Q 026087           29 VAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKS  107 (243)
Q Consensus        29 ~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~  107 (243)
                      .|.+.+++++||+.++++|+.|+..+.+.++. ..+|.++|+|++|+|+++|+++.+|++||+|+.....          
T Consensus         2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~----------   71 (303)
T cd08251           2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGE----------   71 (303)
T ss_pred             CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCC----------
Confidence            46788999999999999999999998876542 2568899999999999999999999999999854210          


Q ss_pred             CCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCChhhhhhcccccchhhhhhh
Q 026087          108 GKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW  187 (243)
Q Consensus       108 ~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~  187 (243)
                                         .                  .|+|++|+.++.+.++++|+++++.+++.+++.+.++|.++ 
T Consensus        72 -------------------~------------------~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l-  113 (303)
T cd08251          72 -------------------S------------------MGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF-  113 (303)
T ss_pred             -------------------C------------------CcceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-
Confidence                               1                  23899999999999999999999999999999999999976 


Q ss_pred             hcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          188 NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       188 ~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      ....+++|++++|+++ +.+|.+++++++.+|+ +++++++++++.+.++++|++
T Consensus       114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~  167 (303)
T cd08251         114 ARAGLAKGEHILIQTATGGTGLMAVQLARLKGA-EIYATASSDDKLEYLKQLGVP  167 (303)
T ss_pred             HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCC
Confidence            5788999999999965 9999999999999999 899999999999999888875

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.89  E-value=7.2e-22  Score=169.66  Aligned_cols=181  Identities=34%  Similarity=0.447  Sum_probs=154.4

Q ss_pred             eeEEEEecCCCC--eEEEeeccCCCC-CCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcC
Q 026087           10 CKAAVAWEPNKP--LVIEDVQVAPPQ-AGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEV   85 (243)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~~~~p~~~-~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~   85 (243)
                      |+|+++.+.+..  +++.+.+ |.+. +++++||+.++++|+.|+..+.+.... ...|.++|||++|+|+.+|+++..+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~   79 (323)
T cd08241           1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGF   79 (323)
T ss_pred             CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCC
Confidence            578888755433  7777777 7665 599999999999999999988876532 2446689999999999999999999


Q ss_pred             CCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCC
Q 026087           86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (243)
Q Consensus        86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~  165 (243)
                      ++||+|+....                               +                  |++++|+.++.+.++++|+
T Consensus        80 ~~G~~V~~~~~-------------------------------~------------------~~~~~~~~~~~~~~~~ip~  110 (323)
T cd08241          80 KVGDRVVALTG-------------------------------Q------------------GGFAEEVVVPAAAVFPLPD  110 (323)
T ss_pred             CCCCEEEEecC-------------------------------C------------------ceeEEEEEcCHHHceeCCC
Confidence            99999985420                               1                  2899999999999999999


Q ss_pred             CCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +++..+++.+.....++|.++.....++++++|+|+|+ |.+|++++++++.+|+ +|+.++.++++.+.++++|++
T Consensus       111 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~  186 (323)
T cd08241         111 GLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALARALGAD  186 (323)
T ss_pred             CCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHcCCc
Confidence            99998888888899999998777788999999999998 9999999999999999 799999999999998888764

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.89  E-value=4.1e-22  Score=165.97  Aligned_cols=167  Identities=25%  Similarity=0.306  Sum_probs=134.7

Q ss_pred             eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeC--CCCCcCCCCCEEeeecccCC
Q 026087           22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVG--EGVTEVQPGDHVIPCYQAEC   99 (243)
Q Consensus        22 ~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G--~~~~~~~~Gd~V~~~~~~~~   99 (243)
                      |+++++++|+|++||||||+++.++++....-++.. +.--.|.-+|-..+|.++...  |...+|++||.|+..     
T Consensus        27 F~lee~~vp~p~~GqvLl~~~ylS~DPymRgrm~d~-~SY~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~-----  100 (340)
T COG2130          27 FRLEEVDVPEPGEGQVLLRTLYLSLDPYMRGRMSDA-PSYAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGV-----  100 (340)
T ss_pred             ceeEeccCCCCCcCceEEEEEEeccCHHHeecccCC-cccCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEec-----
Confidence            999999999999999999999999988443322222 221345555655554443332  556789999999732     


Q ss_pred             CCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCChhh--hhhccc
Q 026087          100 RECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK--VCLLGC  177 (243)
Q Consensus       100 ~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~--aa~l~~  177 (243)
                                               .                      +|++|..++.+.+.|++++.-+..  ...|.+
T Consensus       101 -------------------------~----------------------GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGm  133 (340)
T COG2130         101 -------------------------S----------------------GWQEYAISDGEGLRKLDPSPAPLSAYLGVLGM  133 (340)
T ss_pred             -------------------------c----------------------cceEEEeechhhceecCCCCCCcchHHhhcCC
Confidence                                     1                      799999999999999986544333  344788


Q ss_pred             ccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH-hcccC
Q 026087          178 GVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN-ALAMS  242 (243)
Q Consensus       178 ~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~-~Ga~~  242 (243)
                      +..|||.++++..+.|+|++|+|.++ |.+|..+.|+||..|+ +||++..+++|.+++++ +|+|.
T Consensus       134 pG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~-rVVGiaGg~eK~~~l~~~lGfD~  199 (340)
T COG2130         134 PGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGFDA  199 (340)
T ss_pred             chHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCC-eEEEecCCHHHHHHHHHhcCCce
Confidence            99999999999999999999999987 9999999999999999 99999999999999998 89875

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.88  E-value=4.8e-21  Score=166.09  Aligned_cols=180  Identities=24%  Similarity=0.337  Sum_probs=148.8

Q ss_pred             eEEEEecCCC--CeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCCC
Q 026087           11 KAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQP   87 (243)
Q Consensus        11 ~a~~~~~~~~--~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~~   87 (243)
                      ||+++...+.  .+.+.+.+.|.+.+++|+||+.++++|+.|...+.+.... ...|.++|||++|+|+.+|+++.+|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~   80 (337)
T cd08275           1 RAVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKV   80 (337)
T ss_pred             CeEEEcCCCCccceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCC
Confidence            4566655443  3778788888889999999999999999999998876532 245778999999999999999999999


Q ss_pred             CCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCC
Q 026087           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (243)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~  167 (243)
                      ||+|+....                                                 .|+|++|+.++.+.++++|+++
T Consensus        81 G~~V~~~~~-------------------------------------------------~~~~~~~~~~~~~~~~~ip~~~  111 (337)
T cd08275          81 GDRVMGLTR-------------------------------------------------FGGYAEVVNVPADQVFPLPDGM  111 (337)
T ss_pred             CCEEEEecC-------------------------------------------------CCeeeeEEEecHHHeEECCCCC
Confidence            999985321                                                 1289999999999999999999


Q ss_pred             ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHHHhccc
Q 026087          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~-G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      ++.+++.+.+...++|+++.....+++|++|+|+|+ |.+|++++++++.+ +. .++.. .++++.+.+.++|++
T Consensus       112 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~~~~-~~~~~-~~~~~~~~~~~~g~~  185 (337)
T cd08275         112 SFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTVPNV-TVVGT-ASASKHEALKENGVT  185 (337)
T ss_pred             CHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHccCc-EEEEe-CCHHHHHHHHHcCCc
Confidence            999999998899999998877888999999999998 99999999999999 43 33332 345577888777764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.87  E-value=2.6e-21  Score=163.50  Aligned_cols=152  Identities=26%  Similarity=0.276  Sum_probs=136.7

Q ss_pred             CcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCC
Q 026087           35 GEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCG  114 (243)
Q Consensus        35 ~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~  114 (243)
                      +|++||+.++++|++|++...+..+  .+|.++|||++|+|+++|++++.|++||+|....                   
T Consensus         1 ~~v~i~v~~~~~~~~d~~~~~g~~~--~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~-------------------   59 (293)
T cd05195           1 DEVEVEVKAAGLNFRDVLVALGLLP--GDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA-------------------   59 (293)
T ss_pred             CceEEEEEEEecCHHHHHHHhCCCC--CCCCccceeeeEEEEeecCCccCCCCCCEEEEEe-------------------
Confidence            5899999999999999999987652  4578999999999999999999999999997531                   


Q ss_pred             CccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCC
Q 026087          115 KVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEP  194 (243)
Q Consensus       115 ~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~  194 (243)
                                                     .|+|++|+.++.+.++++|+++++.+++.+.++..++|.++.....+++
T Consensus        60 -------------------------------~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  108 (293)
T cd05195          60 -------------------------------PGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQK  108 (293)
T ss_pred             -------------------------------cCcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCC
Confidence                                           1389999999999999999999999999988899999998877788999


Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhc
Q 026087          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNAL  239 (243)
Q Consensus       195 g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~G  239 (243)
                      |++|+|+|+ |.+|++++++++.+|+ ++++++.++++.+.++++|
T Consensus       109 g~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~  153 (293)
T cd05195         109 GESVLIHAAAGGVGQAAIQLAQHLGA-EVFATVGSEEKREFLRELG  153 (293)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhC
Confidence            999999975 9999999999999999 8999988888999888887

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>smart00829 PKS_ER Enoylreductase

Probab=99.85  E-value=1.9e-20  Score=158.14  Aligned_cols=148  Identities=26%  Similarity=0.322  Sum_probs=133.6

Q ss_pred             EEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccC
Q 026087           39 IKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRG  118 (243)
Q Consensus        39 Vkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~  118 (243)
                      ||+.++++|+.|+..+.+.++   .|.++|||++|+|+++|++++.|++||+|....                       
T Consensus         2 i~v~~~~i~~~d~~~~~g~~~---~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~-----------------------   55 (288)
T smart00829        2 VEVRAAGLNFRDVLIALGLLP---GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLA-----------------------   55 (288)
T ss_pred             eeEEEEecCHHHHHHhcCCCC---CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEc-----------------------
Confidence            899999999999999987653   357899999999999999999999999997431                       


Q ss_pred             CCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEE
Q 026087          119 ATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIV  198 (243)
Q Consensus       119 ~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~v  198 (243)
                                                 .|+|++|+.++.+.++++|+++++.+++.+.+...++|.++.....+++|++|
T Consensus        56 ---------------------------~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~v  108 (288)
T smart00829       56 ---------------------------PGSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESV  108 (288)
T ss_pred             ---------------------------CCceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEE
Confidence                                       13899999999999999999999999999998999999987777889999999


Q ss_pred             EEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          199 AVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       199 lV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      +|+|+ |.+|++++++++.+|+ +|+++++++++.+.++++|+
T Consensus       109 lv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~  150 (288)
T smart00829      109 LIHAAAGGVGQAAIQLAQHLGA-EVFATAGSPEKRDFLRELGI  150 (288)
T ss_pred             EEecCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCC
Confidence            99986 9999999999999999 89999999999999998887

Enoylreductase in Polyketide synthases.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.77  E-value=3.7e-18  Score=144.84  Aligned_cols=129  Identities=33%  Similarity=0.411  Sum_probs=114.5

Q ss_pred             CCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCcccccc
Q 026087           56 GKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSI  135 (243)
Q Consensus        56 g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~  135 (243)
                      |.++. ++|.++|||++|+|+++|+++++|++||+|+...                                        
T Consensus        14 ~~~~~-~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~----------------------------------------   52 (277)
T cd08255          14 GTEKL-PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCFG----------------------------------------   52 (277)
T ss_pred             cCccC-cCCcccCcceeEEEEEeCCCCCCCCCCCEEEecC----------------------------------------
Confidence            33333 5889999999999999999999999999997421                                        


Q ss_pred             CCcceeeecCCcceeeEEEeccceeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 026087          136 NGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAK  215 (243)
Q Consensus       136 ~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~  215 (243)
                                  .|++|+.++.+.++++|+++++.+++.+ .+..++|+++ ...++++++++||+|+|.+|++++++|+
T Consensus        53 ------------~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vlI~g~g~vg~~~i~~a~  118 (277)
T cd08255          53 ------------PHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGV-RDAEPRLGERVAVVGLGLVGLLAAQLAK  118 (277)
T ss_pred             ------------CcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHH
Confidence                        5889999999999999999999988888 7889999976 4688999999999988999999999999


Q ss_pred             HcCCCEEEEEcCChhHHHHHHHhc
Q 026087          216 AAGASRVIGIDIDPKKFDRVLNAL  239 (243)
Q Consensus       216 ~~G~~~vi~~~~~~~~~~~~~~~G  239 (243)
                      .+|+++|+++++++++.++++++|
T Consensus       119 ~~g~~~vi~~~~~~~~~~~~~~~g  142 (277)
T cd08255         119 AAGAREVVGVDPDAARRELAEALG  142 (277)
T ss_pred             HcCCCcEEEECCCHHHHHHHHHcC
Confidence            999944999999999999999988

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.70  E-value=1.9e-15  Score=125.94  Aligned_cols=163  Identities=25%  Similarity=0.267  Sum_probs=122.2

Q ss_pred             EEEeeccC-CCCCCcEEEEEeEEecChhhHHhhcCCCCCC-CCCe-----eeeeceEEEEEEeCCCCCcCCCCCEEeeec
Q 026087           23 VIEDVQVA-PPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPC-----ILGHEAAGIVESVGEGVTEVQPGDHVIPCY   95 (243)
Q Consensus        23 ~~~~~~~p-~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~-~~p~-----~~G~e~vG~V~~~G~~~~~~~~Gd~V~~~~   95 (243)
                      +..+.+++ .+.+++|+||.++.+..|.....+....+.. -.|.     +.| ..+|+|++.  +-.+|++||.|... 
T Consensus        25 ~~~~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g-~GV~kVi~S--~~~~~~~GD~v~g~-  100 (343)
T KOG1196|consen   25 TTTTVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDG-FGVAKVIDS--GHPNYKKGDLVWGI-  100 (343)
T ss_pred             eeeeecccCCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecC-CceEEEEec--CCCCCCcCceEEEe-
Confidence            33444433 4588999999999999776644333222211 1122     334 679999994  55789999999532 


Q ss_pred             ccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc--eeEEcCC--CCChhh
Q 026087           96 QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDP--QAPLDK  171 (243)
Q Consensus        96 ~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~lp~--~~~~~~  171 (243)
                                                   .                      +|.+|.++++.  ..++++.  +..+..
T Consensus       101 -----------------------------~----------------------gWeeysii~~~~~~~~ki~~~~~~pLs~  129 (343)
T KOG1196|consen  101 -----------------------------V----------------------GWEEYSVITPNDLEHFKIQHPTDVPLSY  129 (343)
T ss_pred             -----------------------------c----------------------cceEEEEecCcchhcccCCCCCccCHhh
Confidence                                         2                      69999999764  3445543  344333


Q ss_pred             -hhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH-hccc
Q 026087          172 -VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN-ALAM  241 (243)
Q Consensus       172 -aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~-~Ga~  241 (243)
                       ...+.++.+|||..+++....++|++|+|-|| |++|.++.|+|+.+|| +|++...+++|.+++++ +|+|
T Consensus       130 ylg~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc-~VVGsaGS~EKv~ll~~~~G~d  201 (343)
T KOG1196|consen  130 YLGLLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGC-YVVGSAGSKEKVDLLKTKFGFD  201 (343)
T ss_pred             hhhccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCC-EEEEecCChhhhhhhHhccCCc
Confidence             34468899999999999999999999999987 9999999999999999 99999999999999985 6876

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.54  E-value=4.5e-14  Score=134.25  Aligned_cols=157  Identities=18%  Similarity=0.182  Sum_probs=133.8

Q ss_pred             eEEEeeccC--C-CCCCcEEEEEeEEecChhhHHhhcCCCCCCCC-------CeeeeeceEEEEEEeCCCCCcCCCCCEE
Q 026087           22 LVIEDVQVA--P-PQAGEVRIKILFTALCHTDAYTWSGKDPEGLF-------PCILGHEAAGIVESVGEGVTEVQPGDHV   91 (243)
Q Consensus        22 ~~~~~~~~p--~-~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~-------p~~~G~e~vG~V~~~G~~~~~~~~Gd~V   91 (243)
                      +++.+.|..  . ..++.=+--|-|+.||..|+....|+.+....       .+++|-|++|+          .+-|.||
T Consensus      1429 lrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGR----------d~~GrRv 1498 (2376)
T KOG1202|consen 1429 LRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGR----------DASGRRV 1498 (2376)
T ss_pred             eeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccc----------cCCCcEE
Confidence            666666654  2 36677788999999999999999998765433       36899999988          3559999


Q ss_pred             eeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCChhh
Q 026087           92 IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK  171 (243)
Q Consensus        92 ~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~  171 (243)
                      +...-                              .                   -+++..+.++.+.+|.+|.+...++
T Consensus      1499 M~mvp------------------------------A-------------------ksLATt~l~~rd~lWevP~~WTlee 1529 (2376)
T KOG1202|consen 1499 MGMVP------------------------------A-------------------KSLATTVLASRDFLWEVPSKWTLEE 1529 (2376)
T ss_pred             EEeee------------------------------h-------------------hhhhhhhhcchhhhhhCCcccchhh
Confidence            64421                              0                   1688889999999999999999999


Q ss_pred             hhhcccccchhhhhhhhcCCCCCCCEEEEEc-CCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087          172 VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       172 aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G-~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      |++.++.+.|+|+|+..+...|+|++|||++ +|++|.+||.+|.+.|+ +|+.+..+.+|.+++++.
T Consensus      1530 AstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~-~VFTTVGSaEKRefL~~r 1596 (2376)
T KOG1202|consen 1530 ASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGC-TVFTTVGSAEKREFLLKR 1596 (2376)
T ss_pred             cccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHHHcCC-EEEEecCcHHHHHHHHHh
Confidence            9999999999999999999999999999995 59999999999999999 999999999999998764

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.13  E-value=6.5e-06  Score=75.59  Aligned_cols=50  Identities=32%  Similarity=0.341  Sum_probs=47.6

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       191 ~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +..++++|+|+|+|.+|+++++.|+.+|+ +|+++|.+++|++.++++|++
T Consensus       161 G~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~  210 (509)
T PRK09424        161 GKVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAE  210 (509)
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCe
Confidence            35789999999999999999999999999 899999999999999999987

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.72  E-value=0.00011  Score=65.91  Aligned_cols=58  Identities=24%  Similarity=0.329  Sum_probs=50.1

Q ss_pred             hhhhhhcCC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          183 LGAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       183 ~~~~~~~~~-~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +.++.+..+ ..+|++|+|+|.|.+|+.+++.++.+|+ +|++++.++.|++.++++|++
T Consensus       189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~G~~  247 (413)
T cd00401         189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAMEGYE  247 (413)
T ss_pred             HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhcCCE
Confidence            344444444 4789999999999999999999999999 899999999999999999985

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=97.45  E-value=0.00034  Score=64.33  Aligned_cols=50  Identities=32%  Similarity=0.343  Sum_probs=46.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ..++++++|+|+|.+|++++++++.+|+ +|++++.++++++.++++|++.
T Consensus       161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lGa~~  210 (511)
T TIGR00561       161 KVPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEF  210 (511)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeE
Confidence            3567999999999999999999999999 7999999999999999999864

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.40  E-value=3.8e-06  Score=75.82  Aligned_cols=133  Identities=15%  Similarity=0.150  Sum_probs=85.3

Q ss_pred             eeeeceEEEEEEeCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecC
Q 026087           66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMG  145 (243)
Q Consensus        66 ~~G~e~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  145 (243)
                      .-|.|+++-+.+++++++.     +|++.+.. ||.|.+|    .+.|.....   .|.. .++                
T Consensus        89 ~~~~~a~~hl~~Va~GldS-----~V~GE~qI-~gQvk~a----~~~a~~~~~---~g~~-l~~----------------  138 (417)
T TIGR01035        89 LTGESAVEHLFRVASGLDS-----MVVGETQI-LGQVKNA----YKVAQEEKT---VGKV-LER----------------  138 (417)
T ss_pred             cCchHHHHHHHHHHhhhhh-----hhcCChHH-HHHHHHH----HHHHHHcCC---chHH-HHH----------------
Confidence            4688899999999988765     56666665 8888888    333332221   1211 222                


Q ss_pred             CcceeeEEEeccceeEE---c-CCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCE
Q 026087          146 TSTFSQYTVVHDVSVAK---I-DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASR  221 (243)
Q Consensus       146 ~g~~~~~~~~~~~~~~~---l-p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~  221 (243)
                        .|++++.++. .+..   + +..+|...+|.         ....+..+..++++|+|+|+|.+|..+++.++..|+.+
T Consensus       139 --lf~~a~~~~k-~vr~~t~i~~~~vSv~~~Av---------~la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~  206 (417)
T TIGR01035       139 --LFQKAFSVGK-RVRTETDISAGAVSISSAAV---------ELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVGK  206 (417)
T ss_pred             --HHHHHHHHhh-hhhhhcCCCCCCcCHHHHHH---------HHHHHHhCCccCCEEEEECChHHHHHHHHHHHHCCCCE
Confidence              7888777765 2221   2 22233222211         10123334467899999999999999999999999668


Q ss_pred             EEEEcCChhHHH-HHHHhcc
Q 026087          222 VIGIDIDPKKFD-RVLNALA  240 (243)
Q Consensus       222 vi~~~~~~~~~~-~~~~~Ga  240 (243)
                      |++++++.++.+ +++++|.
T Consensus       207 V~v~~rs~~ra~~la~~~g~  226 (417)
T TIGR01035       207 ILIANRTYERAEDLAKELGG  226 (417)
T ss_pred             EEEEeCCHHHHHHHHHHcCC
Confidence            999999988754 5556664

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=97.20  E-value=0.0019  Score=54.32  Aligned_cols=81  Identities=26%  Similarity=0.360  Sum_probs=53.2

Q ss_pred             eeeEEEeccceeEEcCCCCChhhhhhcccccchhhhhhhhc-CCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC
Q 026087          149 FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI  227 (243)
Q Consensus       149 ~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~-~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~  227 (243)
                      |.++.. +....+.+++++++..+.--.    |.. ++... ...+++++||-+|+|. |.+++.+++ .|+.+|+++|.
T Consensus        79 ~~~~~~-~~~~~i~i~p~~afgtg~h~t----t~~-~l~~l~~~~~~~~~VLDiGcGs-G~l~i~~~~-~g~~~v~giDi  150 (250)
T PRK00517         79 WEDPPD-PDEINIELDPGMAFGTGTHPT----TRL-CLEALEKLVLPGKTVLDVGCGS-GILAIAAAK-LGAKKVLAVDI  150 (250)
T ss_pred             CcCCCC-CCeEEEEECCCCccCCCCCHH----HHH-HHHHHHhhcCCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEEEC
Confidence            554433 567778888887766443111    111 12111 1256889999999987 888876554 67767999999


Q ss_pred             ChhHHHHHHH
Q 026087          228 DPKKFDRVLN  237 (243)
Q Consensus       228 ~~~~~~~~~~  237 (243)
                      ++..++.+++
T Consensus       151 s~~~l~~A~~  160 (250)
T PRK00517        151 DPQAVEAARE  160 (250)
T ss_pred             CHHHHHHHHH
Confidence            9988877654

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.15  E-value=0.00043  Score=60.13  Aligned_cols=83  Identities=18%  Similarity=0.118  Sum_probs=61.4

Q ss_pred             ceeEEcCCCCChhhhhhcccccchhhhhhhhcCC---CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHH-H
Q 026087          158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK---VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF-D  233 (243)
Q Consensus       158 ~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~---~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~-~  233 (243)
                      ...+++|+.+..+.+.... +.+.++.++.....   -.++.+|+|+|+|.+|..+++.++..|+.+|++++++.+|. +
T Consensus       139 ~~a~~~~k~vr~et~i~~~-~~sv~~~Av~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~  217 (311)
T cd05213         139 QKAIKVGKRVRTETGISRG-AVSISSAAVELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEE  217 (311)
T ss_pred             HHHHHHHHHHhhhcCCCCC-CcCHHHHHHHHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            3556778888877766654 55566665432222   24789999999999999999999998877899999998775 6


Q ss_pred             HHHHhccc
Q 026087          234 RVLNALAM  241 (243)
Q Consensus       234 ~~~~~Ga~  241 (243)
                      ++.++|++
T Consensus       218 la~~~g~~  225 (311)
T cd05213         218 LAKELGGN  225 (311)
T ss_pred             HHHHcCCe
Confidence            66777763

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=97.03  E-value=0.0022  Score=57.85  Aligned_cols=58  Identities=29%  Similarity=0.352  Sum_probs=46.6

Q ss_pred             hhhhhhcCCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          183 LGAVWNTAKV-EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       183 ~~~~~~~~~~-~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      |.++.+..++ ..|++|+|+|.|.+|..+++.++.+|+ +|++++.++.|...+...|++
T Consensus       199 ~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~G~~  257 (425)
T PRK05476        199 LDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMDGFR  257 (425)
T ss_pred             HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhcCCE
Confidence            4444444344 489999999999999999999999999 899999998887666666654

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.96  E-value=0.0028  Score=56.86  Aligned_cols=57  Identities=26%  Similarity=0.326  Sum_probs=46.5

Q ss_pred             hhhhhcCC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          184 GAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       184 ~~~~~~~~-~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      .++.+..+ ...|++|+|+|.|.+|..+++.++.+|+ +|++++.++.+...+...|+.
T Consensus       183 ~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~~G~~  240 (406)
T TIGR00936       183 DGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAMDGFR  240 (406)
T ss_pred             HHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHhcCCE
Confidence            33434433 4789999999999999999999999999 899999888887777777764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.91  E-value=0.0041  Score=47.19  Aligned_cols=45  Identities=27%  Similarity=0.359  Sum_probs=39.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      -.+.+++|+|+|.+|.+++..+...|+++|+.+.++.+|.+.+.+
T Consensus        10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~   54 (135)
T PF01488_consen   10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAE   54 (135)
T ss_dssp             GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHH
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHH
Confidence            357899999999999999999999999889999999988766643

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.79  E-value=0.0056  Score=52.79  Aligned_cols=47  Identities=30%  Similarity=0.344  Sum_probs=43.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      .+++++|+|.|.+|..+++.++.+|+ +|++++++.++.+.++++|++
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~G~~  197 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITEMGLS  197 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCe
Confidence            68999999999999999999999999 999999998888888888765

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.70  E-value=0.0033  Score=59.07  Aligned_cols=50  Identities=26%  Similarity=0.331  Sum_probs=42.4

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC---------------------hhHHHHHHHhccc
Q 026087          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID---------------------PKKFDRVLNALAM  241 (243)
Q Consensus       191 ~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~---------------------~~~~~~~~~~Ga~  241 (243)
                      ..++|++|+|+|+|+.|+++++.++.+|+ +|++++..                     +++++.++++|++
T Consensus       133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~  203 (564)
T PRK12771        133 APDTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVE  203 (564)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCE
Confidence            46789999999999999999999999999 78888742                     3567778888875

>PLN02494 adenosylhomocysteinase

Probab=96.63  E-value=0.0068  Score=55.18  Aligned_cols=58  Identities=33%  Similarity=0.386  Sum_probs=46.8

Q ss_pred             hhhhhhcCCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          183 LGAVWNTAKV-EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       183 ~~~~~~~~~~-~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +.++.+..++ ..|++|+|+|.|.+|...++.++.+|+ +|++++.++.+...+...|+.
T Consensus       241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~G~~  299 (477)
T PLN02494        241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALMEGYQ  299 (477)
T ss_pred             HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhcCCe
Confidence            3344454443 679999999999999999999999999 899999988776666666653

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.52  E-value=0.0091  Score=47.02  Aligned_cols=47  Identities=36%  Similarity=0.425  Sum_probs=38.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +..+|+|+|+|.+|..|+.+++.+|+ +++..+...++++.....++.
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~~~~~~   65 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLESLGAY   65 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTE
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhhcccCc
Confidence            34789999999999999999999999 899999998888887776653

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.38  E-value=0.0097  Score=53.93  Aligned_cols=63  Identities=19%  Similarity=0.138  Sum_probs=47.6

Q ss_pred             ccchhhhhhhhcC---CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHH-HHHHhcc
Q 026087          178 GVPTGLGAVWNTA---KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD-RVLNALA  240 (243)
Q Consensus       178 ~~~ta~~~~~~~~---~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~-~~~~~Ga  240 (243)
                      +.+.++.++....   +..++++|+|+|+|.+|.++++.++..|+.+|++++++.++.+ ++.++|+
T Consensus       162 ~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~  228 (423)
T PRK00045        162 AVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG  228 (423)
T ss_pred             CcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC
Confidence            4445555543222   2367899999999999999999999999878999999988855 6666664

>TIGR00518 alaDH alanine dehydrogenase

Probab=95.99  E-value=0.02  Score=50.96  Aligned_cols=43  Identities=28%  Similarity=0.347  Sum_probs=37.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      ++.+|+|+|+|.+|+.+++.++.+|+ +|+++++++++++.+.+
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~  208 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDA  208 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHH
Confidence            34569999999999999999999999 89999999888776653

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=95.97  E-value=0.022  Score=48.93  Aligned_cols=47  Identities=30%  Similarity=0.396  Sum_probs=40.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      .|++++|+|.|.+|...+..++.+|+ +|+++++++++.+.+.++|+.
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~~~~~g~~  196 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSADLARITEMGLI  196 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCe
Confidence            57899999999999999999999999 899999998887766666643

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.92  E-value=0.027  Score=45.71  Aligned_cols=49  Identities=37%  Similarity=0.426  Sum_probs=40.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH-hccc
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN-ALAM  241 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~-~Ga~  241 (243)
                      --.|.+++|+|.|.+|..+++.+...|+ +|++++.++++.+.+.+ +|+.
T Consensus        25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~~~~g~~   74 (200)
T cd01075          25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARAAELFGAT   74 (200)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE
Confidence            3467899999999999999999999999 89999999888776654 3543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=95.89  E-value=0.027  Score=47.75  Aligned_cols=49  Identities=29%  Similarity=0.567  Sum_probs=41.2

Q ss_pred             cCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-EEEEEcCChhHHHHHHHh
Q 026087          189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       189 ~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~-~vi~~~~~~~~~~~~~~~  238 (243)
                      ...+++|++||.+|+|. |..++++++..|.. +|+++|.+++.++.+++.
T Consensus        72 ~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~  121 (272)
T PRK11873         72 LAELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARAN  121 (272)
T ss_pred             hccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHH
Confidence            35688999999999988 88888888887753 799999999998888764

>PRK04148 hypothetical protein; Provisional

Probab=95.81  E-value=0.025  Score=42.76  Aligned_cols=48  Identities=25%  Similarity=0.293  Sum_probs=39.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      .+++.+++++|.| .|...+..+..+|. .|+++|.+++..+.+++.+.+
T Consensus        14 ~~~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~   61 (134)
T PRK04148         14 KGKNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLN   61 (134)
T ss_pred             cccCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCe
Confidence            3456889999999 88755666668899 999999999999888877654

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=95.80  E-value=0.032  Score=44.32  Aligned_cols=47  Identities=38%  Similarity=0.453  Sum_probs=38.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhc
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNAL  239 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~G  239 (243)
                      --.|.+|.|+|.|.+|...++.++.+|+ +|+++++..+..+...+.+
T Consensus        33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~~~   79 (178)
T PF02826_consen   33 ELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEGADEFG   79 (178)
T ss_dssp             -STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHTT
T ss_pred             ccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhhccccc
Confidence            3468999999999999999999999999 9999998887655344444

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=95.75  E-value=0.043  Score=50.13  Aligned_cols=49  Identities=31%  Similarity=0.355  Sum_probs=40.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      .-.|++|+|+|.|.+|...++.++.+|+ +|++++.++.+...+...|+.
T Consensus       251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~~~G~~  299 (476)
T PTZ00075        251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAAMEGYQ  299 (476)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHhcCce
Confidence            4589999999999999999999999999 899998887766444445553

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=95.46  E-value=0.067  Score=45.86  Aligned_cols=44  Identities=27%  Similarity=0.369  Sum_probs=38.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      ..+.+|+|+|+|+.|.+++..+..+|+++|+.++++.+|.+.+.
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la  168 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALA  168 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence            35678999999999999999999999989999999988876553

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=95.34  E-value=0.06  Score=46.09  Aligned_cols=45  Identities=24%  Similarity=0.351  Sum_probs=39.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      ..+++++|+|+|+.+.+++..++..|+.+|+++.|+.+|.+.+.+
T Consensus       124 ~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~  168 (283)
T COG0169         124 VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELAD  168 (283)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence            357999999999999999999999998899999999998766654

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=95.24  E-value=0.09  Score=44.79  Aligned_cols=45  Identities=27%  Similarity=0.269  Sum_probs=38.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      ...+++++|+|+|+.+.+++..++.+|+.+|+++.++.+|.+.+.
T Consensus       119 ~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la  163 (272)
T PRK12550        119 VPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALA  163 (272)
T ss_pred             CCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence            344568999999999999999999999988999999988876654

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=95.20  E-value=0.064  Score=45.93  Aligned_cols=43  Identities=23%  Similarity=0.347  Sum_probs=37.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      .+.+++|+|+|..+.+++..+..+|+++|+++.++.+|.+.+.
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La  166 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLV  166 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence            5789999999999999999999999989999999988776553

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK08324 short chain dehydrogenase; Validated

Probab=95.09  E-value=0.059  Score=51.89  Aligned_cols=77  Identities=23%  Similarity=0.289  Sum_probs=52.5

Q ss_pred             ceeeEEEeccceeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEc
Q 026087          148 TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID  226 (243)
Q Consensus       148 ~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~  226 (243)
                      ++++|..++...++.+ +..+.+++.....          ......+|+++||+|+ |.+|...++.+...|+ +|+.++
T Consensus       386 ~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~----------~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~  453 (681)
T PRK08324        386 AVGRYEPLSEQEAFDI-EYWSLEQAKLQRM----------PKPKPLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLAD  453 (681)
T ss_pred             hcCCccCCChhhhcce-eeehhhhhhhhcC----------CCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEe
Confidence            4566666666655555 4444444432100          0122346799999987 9999999999999999 899999


Q ss_pred             CChhHHHHHH
Q 026087          227 IDPKKFDRVL  236 (243)
Q Consensus       227 ~~~~~~~~~~  236 (243)
                      ++.++.+.+.
T Consensus       454 r~~~~~~~~~  463 (681)
T PRK08324        454 LDEEAAEAAA  463 (681)
T ss_pred             CCHHHHHHHH
Confidence            9888765544

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=94.91  E-value=0.13  Score=44.18  Aligned_cols=44  Identities=25%  Similarity=0.272  Sum_probs=37.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      ..+++++|+|+|+.+.+++..+..+|+.+++.+.++.+|.+.+.
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La  168 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALA  168 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Confidence            34688999999999999988888899989999999988866554

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=94.91  E-value=0.092  Score=44.81  Aligned_cols=44  Identities=14%  Similarity=0.196  Sum_probs=37.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      ..+.+++|+|+|.+|.+++..+...|+.+|++++++.++.+.+.
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~  164 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELA  164 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            45678999999999999999999999669999999988876554

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=94.53  E-value=0.15  Score=39.79  Aligned_cols=48  Identities=31%  Similarity=0.399  Sum_probs=35.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      .-.|++++|.|=|.+|...++.++.+|+ +|++++.++-+.-.+..-|+
T Consensus        20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~alqA~~dGf   67 (162)
T PF00670_consen   20 MLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIRALQAAMDGF   67 (162)
T ss_dssp             --TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHHHHHHHHTT-
T ss_pred             eeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHHHHHhhhcCc
Confidence            5688999999999999999999999999 99999999877655544444

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=94.53  E-value=0.13  Score=48.31  Aligned_cols=47  Identities=17%  Similarity=0.171  Sum_probs=40.0

Q ss_pred             hcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          188 NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       188 ~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      ...+.+.|++|||+|+ |.+|...+..+...|+ +|++++++.++.+.+
T Consensus        73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l  120 (576)
T PLN03209         73 KELDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAESL  120 (576)
T ss_pred             cccccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence            4556788999999998 9999999999999999 899999988876543

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=94.47  E-value=0.22  Score=42.68  Aligned_cols=44  Identities=32%  Similarity=0.467  Sum_probs=35.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      .+++++||-+|+|+ |.+++.+++ .|+.+|+++|.++..++.+++
T Consensus       157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~  200 (288)
T TIGR00406       157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARK  200 (288)
T ss_pred             cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHH
Confidence            46789999999988 887777665 576699999999987776654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK07831 short chain dehydrogenase; Provisional

Probab=94.24  E-value=0.15  Score=42.49  Aligned_cols=43  Identities=33%  Similarity=0.465  Sum_probs=35.7

Q ss_pred             CCCCCEEEEEcC-C-HHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          192 VEPGSIVAVFGL-G-TVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       192 ~~~g~~vlV~G~-g-~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      ...++++||+|+ | ++|...++.+...|+ +|+.+++++++++..
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~   58 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGET   58 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            445789999987 6 799999999999999 799988887766544

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=94.14  E-value=0.24  Score=42.57  Aligned_cols=36  Identities=22%  Similarity=0.339  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .+++++|+|+|++|.+++..+...|+++|+.+++++
T Consensus       125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            568899999999999988888899997799998885

>PLN02780 ketoreductase/ oxidoreductase

Probab=94.13  E-value=0.14  Score=44.53  Aligned_cols=41  Identities=24%  Similarity=0.295  Sum_probs=35.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .|++++|+|+ +++|...+..+...|+ +|+.+++++++++.+
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~   93 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDV   93 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHH
Confidence            5889999998 8999998888888899 899999999887654

>PRK05866 short chain dehydrogenase; Provisional

Probab=94.12  E-value=0.17  Score=43.36  Aligned_cols=41  Identities=27%  Similarity=0.362  Sum_probs=34.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .+.++||+|+ |.+|...++.+...|+ +|+.++++.++++.+
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~   80 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAV   80 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            3578999987 9999999998888999 899999988776544

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=94.05  E-value=0.24  Score=42.52  Aligned_cols=36  Identities=14%  Similarity=0.258  Sum_probs=30.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .++++||+|+|+.+.+++..+..+|+++|+++.+++
T Consensus       123 ~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~  158 (288)
T PRK12749        123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD  158 (288)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            567999999998898877777788998999999885

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=94.01  E-value=0.16  Score=46.66  Aligned_cols=36  Identities=42%  Similarity=0.582  Sum_probs=31.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      +.+++|+|+|+|+.|+.++..++..|. +|+.++..+
T Consensus       139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~  174 (467)
T TIGR01318       139 PTGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHP  174 (467)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCC
Confidence            367899999999999999999999999 788887654

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=93.94  E-value=0.2  Score=41.68  Aligned_cols=42  Identities=29%  Similarity=0.375  Sum_probs=35.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      ++.++||.|+ |.+|...++.+...|+ +|+.++++.++++.+.
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~   53 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAA   53 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            4688999987 9999999999888999 8999998887765443

>PRK06841 short chain dehydrogenase; Provisional

Probab=93.79  E-value=0.22  Score=41.24  Aligned_cols=43  Identities=30%  Similarity=0.320  Sum_probs=34.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      +++++||+|+ |.+|...++.+...|+ +|+.++++++..+...+
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~   57 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSEDVAEVAAQ   57 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            4679999998 9999999988888999 89999888765444433

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=93.79  E-value=0.16  Score=48.69  Aligned_cols=36  Identities=33%  Similarity=0.455  Sum_probs=32.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      ..+++|+|+|+|+.|+.++..++.+|+ +|++++..+
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~  360 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHP  360 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            357899999999999999999999999 798888654

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=93.76  E-value=0.29  Score=38.59  Aligned_cols=43  Identities=23%  Similarity=0.142  Sum_probs=34.3

Q ss_pred             cCCCCCCCEEEEEcCCH-HHHHHHHHHHHcCCCEEEEEcCChhHH
Q 026087          189 TAKVEPGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPKKF  232 (243)
Q Consensus       189 ~~~~~~g~~vlV~G~g~-~G~~a~~~a~~~G~~~vi~~~~~~~~~  232 (243)
                      ...--.|.+|+|+|+|. +|..++..++..|+ +|+.+.++.+.+
T Consensus        38 ~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~~~l   81 (168)
T cd01080          38 YGIDLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKTKNL   81 (168)
T ss_pred             cCCCCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCchhH
Confidence            33346889999999986 59999999999999 788887775433

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK05854 short chain dehydrogenase; Provisional

Probab=93.72  E-value=0.22  Score=43.12  Aligned_cols=41  Identities=32%  Similarity=0.293  Sum_probs=34.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .+++++|+|+ +++|...+..+...|+ +|+.+.+++++.+.+
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~   54 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAA   54 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4688999988 8999999998888999 899988888765443

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=93.71  E-value=0.23  Score=41.04  Aligned_cols=43  Identities=23%  Similarity=0.255  Sum_probs=35.6

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHH
Q 026087          191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (243)
Q Consensus       191 ~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~  234 (243)
                      ...++.++||.|+ |.+|...++.+...|+ +|+.++++.++.+.
T Consensus         8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~   51 (247)
T PRK08945          8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEA   51 (247)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHH
Confidence            3557889999987 9999998888888899 89999988766433

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=93.64  E-value=0.45  Score=36.30  Aligned_cols=47  Identities=21%  Similarity=0.220  Sum_probs=36.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HHhc
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV-LNAL  239 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~-~~~G  239 (243)
                      ..+.+++|+|+|.+|...+..+...|..+|++++++.++.+.+ .+++
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~   64 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFG   64 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHh
Confidence            4568899999999999999888888744899999988776553 4444

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=93.56  E-value=0.23  Score=35.97  Aligned_cols=43  Identities=30%  Similarity=0.523  Sum_probs=36.8

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       198 vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      |+|.|.|.+|...++.++..+. +|++++.++++.+.+++.|..
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~~~~~~~~~~~~~   43 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDPERVEELREEGVE   43 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTSE
T ss_pred             eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCcHHHHHHHhcccc
Confidence            5788999999999999999765 899999999999998887743

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=93.53  E-value=0.23  Score=39.77  Aligned_cols=42  Identities=29%  Similarity=0.358  Sum_probs=34.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      .+.+++|+|+ |.+|...+..+...|+ +|+.++++.++.+.+.
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l~   69 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKAA   69 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence            5689999987 9999988888888898 8999988887765543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK06196 oxidoreductase; Provisional

Probab=93.53  E-value=0.24  Score=42.75  Aligned_cols=41  Identities=27%  Similarity=0.289  Sum_probs=34.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .+.++||+|+ |.+|...+..+...|+ +|+.+++++++.+.+
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~   66 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREA   66 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4678999988 9999999998888999 899998888766543

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=93.50  E-value=0.35  Score=41.01  Aligned_cols=43  Identities=26%  Similarity=0.257  Sum_probs=35.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      ..++++++|+|+|.+|.+.+..+...|+ +|+++++++++.+.+
T Consensus       114 ~~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~~~~~~l  156 (270)
T TIGR00507       114 LRPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTVSKAEEL  156 (270)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            3557899999999999999888888898 899999988776544

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B

Probab=93.48  E-value=0.097  Score=26.87  Aligned_cols=22  Identities=27%  Similarity=0.303  Sum_probs=15.7

Q ss_pred             eeEEEEecCCCCeEEEeeccCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPP   32 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~   32 (243)
                      |||+++.++++ +++++++.|.+
T Consensus         1 MkAv~y~G~~~-v~ve~VpdP~I   22 (23)
T PF13823_consen    1 MKAVVYHGPKD-VRVEEVPDPKI   22 (23)
T ss_dssp             -EEEEEEETTE-EEEEEE----S
T ss_pred             CcceEEeCCCc-eEEEECCCccc
Confidence            79999999998 99999998864

>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]

Probab=93.38  E-value=0.25  Score=42.90  Aligned_cols=54  Identities=19%  Similarity=0.113  Sum_probs=45.5

Q ss_pred             hcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEc---CChhHHHHHHHhcccC
Q 026087          188 NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID---IDPKKFDRVLNALAMS  242 (243)
Q Consensus       188 ~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~---~~~~~~~~~~~~Ga~~  242 (243)
                      ....++||.++||-.. |.+|+..+-++...|+ ++|.+-   .+.+|...++++|+..
T Consensus        96 ~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gy-k~i~tmP~~ms~Ek~~~l~a~Gaei  153 (362)
T KOG1252|consen   96 KKGLITPGKSTLIEPTSGNTGIGLAYMAALRGY-KCIITMPEKMSKEKRILLRALGAEI  153 (362)
T ss_pred             HcCCccCCceEEEecCCCchHHHHHHHHHHcCc-eEEEEechhhhHHHHHHHHHcCCEE
Confidence            4567999999999986 9999999999999999 777774   3457889999999864

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=93.35  E-value=0.29  Score=35.05  Aligned_cols=43  Identities=37%  Similarity=0.580  Sum_probs=34.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHH-HcCCCEEEEEcCChhHHHHHHHh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~-~~G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      |+++||-+|+|. |.+++.+++ ..++ +|++++.+++-++.+++.
T Consensus         1 p~~~vLDlGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~   44 (112)
T PF12847_consen    1 PGGRVLDLGCGT-GRLSIALARLFPGA-RVVGVDISPEMLEIARER   44 (112)
T ss_dssp             TTCEEEEETTTT-SHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHH
T ss_pred             CCCEEEEEcCcC-CHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHH
Confidence            688999998865 666667777 5677 899999999988887653

...

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=93.33  E-value=0.28  Score=39.53  Aligned_cols=48  Identities=23%  Similarity=0.415  Sum_probs=39.6

Q ss_pred             hcCCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHH
Q 026087          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       188 ~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G-~~~vi~~~~~~~~~~~~~  236 (243)
                      ....+.++++||-+|+|. |.+++++++.++ ..+|++++.+++.++.++
T Consensus        34 ~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~   82 (198)
T PRK00377         34 SKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTR   82 (198)
T ss_pred             HHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence            456788999999999988 899999998765 248999999998877654

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=93.26  E-value=0.2  Score=44.85  Aligned_cols=54  Identities=22%  Similarity=0.323  Sum_probs=43.7

Q ss_pred             hhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087          183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       183 ~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      +..+.....+++|++||-+|+| .|.++..+++..|+ +|++++.+++.++.+++.
T Consensus       156 ~~~l~~~l~l~~g~rVLDIGcG-~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~  209 (383)
T PRK11705        156 LDLICRKLQLKPGMRVLDIGCG-WGGLARYAAEHYGV-SVVGVTISAEQQKLAQER  209 (383)
T ss_pred             HHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHH
Confidence            3445567788999999999985 56677788888898 999999999988888764

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=93.03  E-value=0.24  Score=47.32  Aligned_cols=35  Identities=37%  Similarity=0.455  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .+++|+|+|+|+.|+.++..++..|. +|++++..+
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~  343 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHP  343 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCC
Confidence            48999999999999999999999999 788888665

>PRK06197 short chain dehydrogenase; Provisional

Probab=92.95  E-value=0.3  Score=41.93  Aligned_cols=40  Identities=25%  Similarity=0.272  Sum_probs=33.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHH
Q 026087          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (243)
Q Consensus       193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~  233 (243)
                      ..++++||.|+ |.+|...+..+...|+ +|+.+.++.++.+
T Consensus        14 ~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~   54 (306)
T PRK06197         14 QSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGK   54 (306)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            35689999987 9999999998888899 8888888877654

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=92.89  E-value=0.23  Score=42.36  Aligned_cols=50  Identities=22%  Similarity=0.315  Sum_probs=34.5

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      +..+.++++|++||-+|+| -|.++..+++..|+ +|++++.+++-.+.+++
T Consensus        54 ~~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~  103 (273)
T PF02353_consen   54 LCEKLGLKPGDRVLDIGCG-WGGLAIYAAERYGC-HVTGITLSEEQAEYARE  103 (273)
T ss_dssp             HHTTTT--TT-EEEEES-T-TSHHHHHHHHHH---EEEEEES-HHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHcCc-EEEEEECCHHHHHHHHH
Confidence            5678899999999999987 56667778888899 99999999887766643

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=92.76  E-value=0.43  Score=43.15  Aligned_cols=47  Identities=13%  Similarity=0.136  Sum_probs=39.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-Hhc
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL-NAL  239 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~-~~G  239 (243)
                      -.+.+++|+|+|.+|.+++..+...|+.+++++.++.+|.+.+. +++
T Consensus       179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~  226 (414)
T PRK13940        179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR  226 (414)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc
Confidence            45789999999999999999999999878999999987755443 344

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.57  E-value=0.42  Score=43.90  Aligned_cols=47  Identities=32%  Similarity=0.284  Sum_probs=36.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh-----HHHHHHHhccc
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK-----KFDRVLNALAM  241 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~-----~~~~~~~~Ga~  241 (243)
                      .+++|+|+|+|.+|+.++.+++..|+ +|++++.++.     ..+.+++.|+.
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~gv~   66 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEALGAT   66 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHcCCE
Confidence            46789999999999999999999999 8999885542     23455666653

>PLN02253 xanthoxin dehydrogenase

Probab=92.56  E-value=0.42  Score=40.24  Aligned_cols=40  Identities=20%  Similarity=0.223  Sum_probs=33.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~  234 (243)
                      .++++||.|+ |.+|...+..+...|+ +|+.+++++++.+.
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~   57 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDDLGQN   57 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence            4678999987 9999998888888999 89999887765443

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=92.55  E-value=0.41  Score=39.83  Aligned_cols=34  Identities=26%  Similarity=0.255  Sum_probs=30.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      .++++||+|+ +.+|...++.+...|+ +|+.++++
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~   48 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHG   48 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5689999988 9999999999999999 88888776

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=92.38  E-value=0.49  Score=38.91  Aligned_cols=37  Identities=35%  Similarity=0.395  Sum_probs=31.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      -.|.+|+|.|-|.+|..+++.+..+|++.|.+.|.+.
T Consensus        21 l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211          21 LEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            4688999999999999999999999995555566666

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=92.37  E-value=0.33  Score=40.14  Aligned_cols=36  Identities=28%  Similarity=0.394  Sum_probs=32.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCC--EEEEEcCC
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGAS--RVIGIDID  228 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~--~vi~~~~~  228 (243)
                      -.+.+++|+|+|..|..++..+...|++  +++.++++
T Consensus        23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            4567999999999999999988999997  89999988

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=92.26  E-value=0.4  Score=32.44  Aligned_cols=33  Identities=30%  Similarity=0.424  Sum_probs=29.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       197 ~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      +|+|+|+|.+|+-.+..++.+|. +|..+.+++.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR   33 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch
Confidence            57899999999999999999998 8888887664

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=92.12  E-value=0.6  Score=42.05  Aligned_cols=50  Identities=18%  Similarity=0.149  Sum_probs=42.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHH-HHHHHhcccC
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF-DRVLNALAMS  242 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~-~~~~~~Ga~~  242 (243)
                      -.+.++||+|+|-+|.+++..+...|..+|+++.++.+|. ++++++|+.+
T Consensus       176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~  226 (414)
T COG0373         176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEA  226 (414)
T ss_pred             cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCee
Confidence            4778999999999999999999999988999998888875 4566788554

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=92.09  E-value=0.64  Score=33.66  Aligned_cols=48  Identities=23%  Similarity=0.448  Sum_probs=37.7

Q ss_pred             hcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       188 ~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      ....+.++++|+-+|+|. |..+..+++..+..+++++|.++...+.++
T Consensus        13 ~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~   60 (124)
T TIGR02469        13 SKLRLRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIE   60 (124)
T ss_pred             HHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHH
Confidence            344566788898899876 888888888875448999999998877764

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=91.96  E-value=0.29  Score=45.99  Aligned_cols=45  Identities=22%  Similarity=0.288  Sum_probs=41.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      ++++|.|.|.+|...++.++..|. +++++|.++++.+.+++.|..
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~g~~  462 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRERGIR  462 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHCCCe
Confidence            678999999999999999999999 899999999999999887754

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=91.83  E-value=0.77  Score=41.87  Aligned_cols=36  Identities=33%  Similarity=0.395  Sum_probs=30.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEE-cCC
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI-DID  228 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~-~~~  228 (243)
                      --.|.+|+|.|.|.+|..+++.+..+|+ +|+++ |.+
T Consensus       234 ~l~Gk~VaVqG~GnVg~~aa~~L~e~Ga-kVVavSD~~  270 (454)
T PTZ00079        234 SLEGKTVVVSGSGNVAQYAVEKLLQLGA-KVLTMSDSD  270 (454)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEcCC
Confidence            3478999999999999999999999999 88844 444

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=91.79  E-value=0.61  Score=41.75  Aligned_cols=37  Identities=35%  Similarity=0.461  Sum_probs=32.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      -.|.+|.|.|-|.+|..+++.+..+|+ +|++++-+..
T Consensus       205 l~G~rVaVQG~GNVg~~aa~~l~~~GA-kvva~sds~g  241 (411)
T COG0334         205 LEGARVAVQGFGNVGQYAAEKLHELGA-KVVAVSDSKG  241 (411)
T ss_pred             cCCCEEEEECccHHHHHHHHHHHHcCC-EEEEEEcCCC
Confidence            589999999999999999999999999 8888865554

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=91.60  E-value=0.31  Score=41.98  Aligned_cols=43  Identities=40%  Similarity=0.643  Sum_probs=29.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      .++|++||=+|+|+ |++++..++ +|+++|+++|.++.-.+.++
T Consensus       159 ~~~g~~vLDvG~GS-GILaiaA~k-lGA~~v~a~DiDp~Av~~a~  201 (295)
T PF06325_consen  159 VKPGKRVLDVGCGS-GILAIAAAK-LGAKKVVAIDIDPLAVEAAR  201 (295)
T ss_dssp             SSTTSEEEEES-TT-SHHHHHHHH-TTBSEEEEEESSCHHHHHHH
T ss_pred             ccCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEecCCHHHHHHHH
Confidence            67888988887632 444444444 58889999999987665554

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=91.58  E-value=0.55  Score=43.90  Aligned_cols=42  Identities=33%  Similarity=0.480  Sum_probs=36.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      .++++||+|+|++|.+++..+...|+ +|+.+.++.++.+.+.
T Consensus       378 ~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR~~e~a~~la  419 (529)
T PLN02520        378 AGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANRTYERAKELA  419 (529)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence            46789999999999999999999999 8999998887765554

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=91.56  E-value=0.75  Score=39.63  Aligned_cols=55  Identities=22%  Similarity=0.215  Sum_probs=42.2

Q ss_pred             hhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEE--cCChhHHHHHHHhcccC
Q 026087          187 WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI--DIDPKKFDRVLNALAMS  242 (243)
Q Consensus       187 ~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~--~~~~~~~~~~~~~Ga~~  242 (243)
                      .....++||+ .+|-+. |.+|+..+.+|+.+|++-++++  ..+.+|.++++.+||..
T Consensus        54 e~~G~l~pG~-tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAev  111 (300)
T COG0031          54 EKRGLLKPGG-TIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEV  111 (300)
T ss_pred             HHcCCCCCCC-EEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Confidence            4556699999 455565 9999999999999999444444  25668999999999863

>PRK06484 short chain dehydrogenase; Validated

Probab=91.44  E-value=0.6  Score=43.16  Aligned_cols=44  Identities=34%  Similarity=0.429  Sum_probs=37.4

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      ..|+++||.|+ +.+|...++.+...|+ +|+.+++++++++.+.+
T Consensus       267 ~~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~  311 (520)
T PRK06484        267 ESPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAE  311 (520)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            46789999987 9999999999999999 89999998887766543

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=91.32  E-value=0.47  Score=39.80  Aligned_cols=38  Identities=29%  Similarity=0.419  Sum_probs=33.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      ..|-.+++|+|+|.++...+++|+.+|+ +|+++|.+++
T Consensus        97 ~~p~~~L~IfGaG~va~~la~la~~lGf-~V~v~D~R~~  134 (246)
T TIGR02964        97 APPAPHVVLFGAGHVGRALVRALAPLPC-RVTWVDSREA  134 (246)
T ss_pred             cCCCCEEEEECCcHHHHHHHHHHhcCCC-EEEEEeCCcc
Confidence            4677899999999999999999999999 8999886654

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PLN00203 glutamyl-tRNA reductase

Probab=91.31  E-value=0.53  Score=43.87  Aligned_cols=43  Identities=14%  Similarity=0.322  Sum_probs=37.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      +.+|+|+|+|.+|.+++..+...|+.+|+++.++.++.+.+.+
T Consensus       266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~  308 (519)
T PLN00203        266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALRE  308 (519)
T ss_pred             CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Confidence            6899999999999999999999998789999999888766543

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=91.30  E-value=0.58  Score=40.83  Aligned_cols=48  Identities=27%  Similarity=0.284  Sum_probs=38.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      .-.|++|.|+|-|.+|...++.++..|. +|++.++..+..+.+...|+
T Consensus        13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~~~s~~~A~~~G~   60 (335)
T PRK13403         13 LLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRPGKSFEVAKADGF   60 (335)
T ss_pred             hhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECcchhhHHHHHcCC
Confidence            4578999999999999999999999999 88887665555555555555

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=91.14  E-value=0.5  Score=41.45  Aligned_cols=47  Identities=19%  Similarity=0.197  Sum_probs=35.8

Q ss_pred             hhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          181 TGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       181 ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      |||.-+..+..+ ++.+|||+|+ |-+|...+..+...|. +|+++++..
T Consensus         2 ~~~~~~~~~~~~-~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~~   49 (348)
T PRK15181          2 TAYEELRTKLVL-APKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNFS   49 (348)
T ss_pred             chhhhhhhcccc-cCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            566644333333 4478999987 9999999999999998 899998744

>PLN03139 formate dehydrogenase; Provisional

Probab=91.06  E-value=0.53  Score=42.19  Aligned_cols=45  Identities=16%  Similarity=0.115  Sum_probs=36.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhc
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNAL  239 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~G  239 (243)
                      .|++|.|+|.|.+|...++.++.+|+ +|++++++....+...+.|
T Consensus       198 ~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~~~~~~~~~~g  242 (386)
T PLN03139        198 EGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLKMDPELEKETG  242 (386)
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCCcchhhHhhcC
Confidence            67899999999999999999999999 8999987654333334444

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=90.90  E-value=0.46  Score=45.30  Aligned_cols=46  Identities=20%  Similarity=0.287  Sum_probs=41.6

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      .++|+|.|.|.+|...++.++..|. +++++|.++++.+.+++.|..
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~  445 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKFGMK  445 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhcCCe
Confidence            3689999999999999999999999 899999999999999887754

>PRK06720 hypothetical protein; Provisional

Probab=90.86  E-value=1  Score=35.42  Aligned_cols=39  Identities=31%  Similarity=0.282  Sum_probs=32.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~  233 (243)
                      ++.+++|.|+ +.+|...+..+...|+ +|+.++++++..+
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~   54 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQ   54 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence            5778999987 7899998888888898 8999988776553

>PRK07574 formate dehydrogenase; Provisional

Probab=90.57  E-value=0.66  Score=41.55  Aligned_cols=45  Identities=22%  Similarity=0.197  Sum_probs=35.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhc
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNAL  239 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~G  239 (243)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++.....+....+|
T Consensus       191 ~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~~~~~~~~~g  235 (385)
T PRK07574        191 EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRLPEEVEQELG  235 (385)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCCchhhHhhcC
Confidence            57899999999999999999999999 9999987653333333333

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=90.50  E-value=1.2  Score=30.95  Aligned_cols=42  Identities=29%  Similarity=0.396  Sum_probs=33.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC---CCEEE-EEcCChhHHHHHH-Hhc
Q 026087          197 IVAVFGLGTVGLAVAEGAKAAG---ASRVI-GIDIDPKKFDRVL-NAL  239 (243)
Q Consensus       197 ~vlV~G~g~~G~~a~~~a~~~G---~~~vi-~~~~~~~~~~~~~-~~G  239 (243)
                      +|.|+|+|.+|.+.+.-....|   . +|+ ++++++++.+.+. +++
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~-~v~~~~~r~~~~~~~~~~~~~   47 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPH-EVIIVSSRSPEKAAELAKEYG   47 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GG-EEEEEEESSHHHHHHHHHHCT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCce-eEEeeccCcHHHHHHHHHhhc
Confidence            4678899999999888888888   6 777 5489999887764 444

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=90.48  E-value=0.62  Score=40.72  Aligned_cols=37  Identities=35%  Similarity=0.568  Sum_probs=33.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      -.|+++.|+|.|.+|.+.+..++..|+ +|+..++...
T Consensus       144 l~gktvGIiG~GrIG~avA~r~~~Fgm-~v~y~~~~~~  180 (324)
T COG1052         144 LRGKTLGIIGLGRIGQAVARRLKGFGM-KVLYYDRSPN  180 (324)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCCC
Confidence            358999999999999999999999999 8999988764

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.45  E-value=0.68  Score=39.59  Aligned_cols=41  Identities=24%  Similarity=0.457  Sum_probs=33.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .|+.|+|.|+ +++|...+--...+|+ +++.+.+..++++.+
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v   52 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERV   52 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHH
Confidence            5688999998 8999988888888899 677777777776665

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=90.39  E-value=0.81  Score=38.00  Aligned_cols=41  Identities=27%  Similarity=0.137  Sum_probs=33.4

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHH
Q 026087          192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (243)
Q Consensus       192 ~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~  233 (243)
                      -.++.+|||+|+ |.+|...+..+...|+ +|+++.++.++..
T Consensus        14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~   55 (251)
T PLN00141         14 NVKTKTVFVAGATGRTGKRIVEQLLAKGF-AVKAGVRDVDKAK   55 (251)
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhCCC-EEEEEecCHHHHH
Confidence            334679999997 9999999988888898 8988888776643

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=90.34  E-value=0.9  Score=41.02  Aligned_cols=39  Identities=33%  Similarity=0.541  Sum_probs=33.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~  233 (243)
                      .+++++|.|+ |.+|...+..+...|+ +|+++++++++++
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r~~~~l~  216 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGA-KVVALTSNSDKIT  216 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            4679999988 9999999988888999 8999888776654

>PRK14967 putative methyltransferase; Provisional

Probab=90.15  E-value=1.2  Score=36.56  Aligned_cols=47  Identities=26%  Similarity=0.343  Sum_probs=37.0

Q ss_pred             cCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       189 ~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      ...++++++||-.|+|. |..++.+++. ++.+|++++.+++.++.+++
T Consensus        31 ~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~   77 (223)
T PRK14967         31 AEGLGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARL   77 (223)
T ss_pred             hcccCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHH
Confidence            34567889999999987 8888888875 55589999999987775543

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=90.13  E-value=0.38  Score=34.49  Aligned_cols=35  Identities=34%  Similarity=0.282  Sum_probs=30.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .|.+|||+|+|.+|..-++.+...|+ +|++++...
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~   40 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI   40 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch
Confidence            57899999999999999999999999 899887663

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=89.90  E-value=0.86  Score=35.44  Aligned_cols=32  Identities=28%  Similarity=0.425  Sum_probs=28.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID  226 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~  226 (243)
                      .|.+|||+|+|.+|.--++.+...|+ +|.+++
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIs   43 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVS   43 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEc
Confidence            56889999999999998888888999 788774

>PLN02928 oxidoreductase family protein

Probab=89.88  E-value=0.67  Score=40.93  Aligned_cols=35  Identities=20%  Similarity=0.454  Sum_probs=32.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      -.|+++.|+|.|.+|...++.++.+|+ +|++++++
T Consensus       157 l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~  191 (347)
T PLN02928        157 LFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRS  191 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCC
Confidence            357899999999999999999999999 99999875

>PRK12367 short chain dehydrogenase; Provisional

Probab=89.86  E-value=0.88  Score=37.92  Aligned_cols=35  Identities=31%  Similarity=0.597  Sum_probs=30.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .++++||.|+ |.+|...++.+...|+ +|+++++++
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~   48 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSK   48 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCc
Confidence            3578999988 8999999999999999 898888765

>PLN02686 cinnamoyl-CoA reductase

Probab=89.85  E-value=1  Score=39.96  Aligned_cols=43  Identities=19%  Similarity=0.153  Sum_probs=33.8

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      ..+++|||+|+ |.+|...+..+...|+ +|+++.++.++.+.+.
T Consensus        51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~-~V~~~~r~~~~~~~l~   94 (367)
T PLN02686         51 AEARLVCVTGGVSFLGLAIVDRLLRHGY-SVRIAVDTQEDKEKLR   94 (367)
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            44689999987 9999999999999999 8887766665544433

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=89.76  E-value=0.71  Score=30.42  Aligned_cols=30  Identities=33%  Similarity=0.424  Sum_probs=25.5

Q ss_pred             EEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          200 VFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       200 V~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      |+|+|..|+.++..++..|. +|.+++.++.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~-~v~v~E~~~~   30 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGY-RVTVFEKNDR   30 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTS-EEEEEESSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCC-cEEEEecCcc
Confidence            67999999999999999999 9999987653

...

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=89.75  E-value=0.98  Score=38.94  Aligned_cols=43  Identities=33%  Similarity=0.354  Sum_probs=35.6

Q ss_pred             CCCCEEEEEcC-CHHHHH-HHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          193 EPGSIVAVFGL-GTVGLA-VAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       193 ~~g~~vlV~G~-g~~G~~-a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      +-|+|.+|.|+ .++|.. |-++|+ .|. +|+-+.|+++|++.+++
T Consensus        47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~-nvvLIsRt~~KL~~v~k   91 (312)
T KOG1014|consen   47 KLGSWAVVTGATDGIGKAYARELAK-RGF-NVVLISRTQEKLEAVAK   91 (312)
T ss_pred             hcCCEEEEECCCCcchHHHHHHHHH-cCC-EEEEEeCCHHHHHHHHH
Confidence            45799999998 789976 666666 999 89999999999987754

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=89.43  E-value=0.92  Score=43.56  Aligned_cols=37  Identities=30%  Similarity=0.358  Sum_probs=32.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .+.+++|+|+|+|+.|+.++..+..+|. +|++++..+
T Consensus       190 ~~~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~~  226 (652)
T PRK12814        190 PKSGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANE  226 (652)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            3457899999999999999999999999 788887654

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=89.33  E-value=0.71  Score=43.88  Aligned_cols=45  Identities=16%  Similarity=0.155  Sum_probs=40.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +.|+|.|.|.+|...++.++..|. +++++|.++++.+.+++.|..
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~  445 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKYGYK  445 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhCCCe
Confidence            578999999999999999999999 899999999999999888753

>PRK13243 glyoxylate reductase; Reviewed

Probab=89.33  E-value=1.1  Score=39.38  Aligned_cols=37  Identities=32%  Similarity=0.512  Sum_probs=33.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~  231 (243)
                      .|++|.|+|.|.+|...+..++.+|+ +|++++++.+.
T Consensus       149 ~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~  185 (333)
T PRK13243        149 YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRKP  185 (333)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCCh
Confidence            57899999999999999999999999 89999876543

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=89.13  E-value=0.85  Score=38.09  Aligned_cols=35  Identities=34%  Similarity=0.484  Sum_probs=31.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      +.+|+|+|+|++|..++..+..+|.++++.+|.+.
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            47899999999999999999999999999987544

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=89.10  E-value=1.3  Score=38.65  Aligned_cols=50  Identities=18%  Similarity=0.234  Sum_probs=39.6

Q ss_pred             hhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHH
Q 026087          187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       187 ~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~-~~vi~~~~~~~~~~~~~~  237 (243)
                      .....++++++||.+|+| .|..++.+++..+. ..|++++.+++.++.+++
T Consensus        73 l~~L~i~~g~~VLDIG~G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~  123 (322)
T PRK13943         73 MEWVGLDKGMRVLEIGGG-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR  123 (322)
T ss_pred             HHhcCCCCCCEEEEEeCC-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH
Confidence            345668899999999997 49999999998763 369999999987665543

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=89.09  E-value=0.89  Score=36.84  Aligned_cols=35  Identities=29%  Similarity=0.346  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      ...+|+|+|.|++|...+..+..+|..+++.+|.+
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            45789999999999999999999999899999866

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK14982 acyl-ACP reductase; Provisional

Probab=89.03  E-value=1.3  Score=38.97  Aligned_cols=44  Identities=23%  Similarity=0.363  Sum_probs=35.2

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHH-cCCCEEEEEcCChhHHHHHH
Q 026087          193 EPGSIVAVFGL-GTVGLAVAEGAKA-AGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       193 ~~g~~vlV~G~-g~~G~~a~~~a~~-~G~~~vi~~~~~~~~~~~~~  236 (243)
                      -.+.+|+|+|+ |.+|...+..+.. .|..+++.+.++++++..+.
T Consensus       153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La  198 (340)
T PRK14982        153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQ  198 (340)
T ss_pred             cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHH
Confidence            46789999998 8999988887764 57668999998887776653

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=89.02  E-value=1.7  Score=34.76  Aligned_cols=54  Identities=26%  Similarity=0.286  Sum_probs=39.1

Q ss_pred             hhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH----HHhccc
Q 026087          187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV----LNALAM  241 (243)
Q Consensus       187 ~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~----~~~Ga~  241 (243)
                      +.+..+++|+.++=+|+|+ |..++++++.....+|++++++++.++..    ++||.+
T Consensus        27 ls~L~~~~g~~l~DIGaGt-Gsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~   84 (187)
T COG2242          27 LSKLRPRPGDRLWDIGAGT-GSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD   84 (187)
T ss_pred             HHhhCCCCCCEEEEeCCCc-cHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCC
Confidence            3566789999777778743 55567888666566999999999887665    456654

>PRK08328 hypothetical protein; Provisional

Probab=88.93  E-value=0.88  Score=37.72  Aligned_cols=36  Identities=39%  Similarity=0.461  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .+.+|+|+|+|++|..++..+..+|.++++.+|.+.
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            346799999999999999999999999999987543

>PRK14030 glutamate dehydrogenase; Provisional

Probab=88.83  E-value=1.5  Score=40.01  Aligned_cols=32  Identities=38%  Similarity=0.542  Sum_probs=29.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEE
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI  225 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~  225 (243)
                      -.|.+|+|.|-|.+|..+++.+..+|+ +|+++
T Consensus       226 l~g~~vaIQGfGnVG~~aA~~L~e~Ga-kvVav  257 (445)
T PRK14030        226 IKGKTVAISGFGNVAWGAATKATELGA-KVVTI  257 (445)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEE
Confidence            468999999999999999999999999 88884

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=88.70  E-value=0.68  Score=40.50  Aligned_cols=33  Identities=48%  Similarity=0.741  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI  227 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~  227 (243)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.+.
T Consensus       141 ~gkTvGIiG~G~IG~~va~~l~afgm-~v~~~d~  173 (324)
T COG0111         141 AGKTVGIIGLGRIGRAVAKRLKAFGM-KVIGYDP  173 (324)
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCC-eEEEECC
Confidence            37899999999999999999999999 9999987

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=88.64  E-value=1.2  Score=38.15  Aligned_cols=39  Identities=26%  Similarity=0.319  Sum_probs=32.3

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087          192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (243)
Q Consensus       192 ~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~  231 (243)
                      --.|+.|||.|+ +++|.+.++-...+|+ +++.+|.+.+.
T Consensus        35 ~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~   74 (300)
T KOG1201|consen   35 SVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQG   74 (300)
T ss_pred             hccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccc
Confidence            346899999987 7999988888888899 89898877764

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=88.62  E-value=1.1  Score=33.54  Aligned_cols=34  Identities=29%  Similarity=0.453  Sum_probs=29.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      ..+|+|.|+|.+|...+..+...|.++++.+|.+
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            4689999999999999999999999899999744

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=88.50  E-value=1.6  Score=29.95  Aligned_cols=35  Identities=31%  Similarity=0.434  Sum_probs=29.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI  227 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~  227 (243)
                      -.+++++|+|.|.+|...++.+...+..++.++++
T Consensus        21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            46789999999999999999999886557777754

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=88.50  E-value=1.5  Score=38.27  Aligned_cols=43  Identities=19%  Similarity=0.229  Sum_probs=35.8

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      -.|.+++|+|+ +++|..++..+...|+ +|+...++.++.+.++
T Consensus        33 ~~~~~~vVTGansGIG~eta~~La~~Ga-~Vv~~~R~~~~~~~~~   76 (314)
T KOG1208|consen   33 LSGKVALVTGATSGIGFETARELALRGA-HVVLACRNEERGEEAK   76 (314)
T ss_pred             CCCcEEEEECCCCchHHHHHHHHHhCCC-EEEEEeCCHHHHHHHH
Confidence            34578899998 8999999999999998 8999989887665554

>PRK13984 putative oxidoreductase; Provisional

Probab=88.48  E-value=1.3  Score=42.02  Aligned_cols=37  Identities=24%  Similarity=0.208  Sum_probs=32.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .+++++|+|+|+|..|+.++..++.+|. +|++++..+
T Consensus       280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~  316 (604)
T PRK13984        280 EKKNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLS  316 (604)
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            5678999999999999999999999999 788886543

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=88.46  E-value=1.3  Score=42.66  Aligned_cols=41  Identities=27%  Similarity=0.337  Sum_probs=34.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .++++||+|+ |.+|...+..+...|+ +|+.++++.++.+.+
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~~~~~~~~  454 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNLEAAEAV  454 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHH
Confidence            4689999987 9999999998888999 899999887765543

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=88.45  E-value=2  Score=39.66  Aligned_cols=42  Identities=21%  Similarity=0.264  Sum_probs=36.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      .+.+++|+|+|.+|.+++..+...|+ +++.+++++++.+.+.
T Consensus       331 ~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R~~~~~~~la  372 (477)
T PRK09310        331 NNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNRTKAHAEALA  372 (477)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            56789999999999999999999999 8998888887766543

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.29  E-value=1.6  Score=40.13  Aligned_cols=48  Identities=21%  Similarity=0.127  Sum_probs=37.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHH-HHHHhcc
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD-RVLNALA  240 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~-~~~~~Ga  240 (243)
                      .-.+++|+|+|.|..|.+++.+++..|+ .|++.|++..+.. ++.++|+
T Consensus        12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~~~~~l~~~gi   60 (473)
T PRK00141         12 QELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDNETARHKLIEVTGV   60 (473)
T ss_pred             cccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCChHHHHHHHHhcCc
Confidence            3345679999999999999999999999 8999987655433 3345554

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=88.14  E-value=1.1  Score=38.96  Aligned_cols=34  Identities=38%  Similarity=0.521  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      .|++|.|+|-|.+|...+..++.+|+ +|++.++.
T Consensus       144 ~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~~  177 (311)
T PRK08410        144 KGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYSTS  177 (311)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECCC
Confidence            68999999999999999999999999 99999864

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=88.13  E-value=0.79  Score=39.65  Aligned_cols=42  Identities=29%  Similarity=0.366  Sum_probs=37.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      .+|.|+|+|.+|.-++.+|.-+|+ +|...+.+.+|+..+.++
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~  210 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDL  210 (371)
T ss_pred             ccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHh
Confidence            456777999999999999999999 899999999999888653

>PLN03013 cysteine synthase

Probab=88.10  E-value=1.6  Score=39.60  Aligned_cols=54  Identities=22%  Similarity=0.154  Sum_probs=41.5

Q ss_pred             hcCCCCCCCEEEEEc-CCHHHHHHHHHHHHcCCCEEEEE---cCChhHHHHHHHhcccC
Q 026087          188 NTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGI---DIDPKKFDRVLNALAMS  242 (243)
Q Consensus       188 ~~~~~~~g~~vlV~G-~g~~G~~a~~~a~~~G~~~vi~~---~~~~~~~~~~~~~Ga~~  242 (243)
                      ....+++|.+.+|.. +|+.|++.+.+++.+|+ +++++   ..+++|.+.++.+||+.
T Consensus       167 ~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~-~~~VvvP~~~s~~K~~~ira~GAeV  224 (429)
T PLN03013        167 QKGFISPGKSVLVEPTSGNTGIGLAFIAASRGY-RLILTMPASMSMERRVLLKAFGAEL  224 (429)
T ss_pred             HcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCC-CEEEEECCCCcHHHHHHHHHcCCEE
Confidence            445567886666664 59999999999999999 55555   24567899999999864

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=87.95  E-value=2.6  Score=36.11  Aligned_cols=53  Identities=19%  Similarity=0.327  Sum_probs=41.2

Q ss_pred             hhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       183 ~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      +..+..+.+++||++||=+|+|- |.+++-+|+..|+ +|++++.+++-.+.+++
T Consensus        61 ~~~~~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~  113 (283)
T COG2230          61 LDLILEKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGV-TVVGVTLSEEQLAYAEK  113 (283)
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCC-EEEEeeCCHHHHHHHHH
Confidence            34467889999999999998754 4556677788899 99999999886655543

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=87.87  E-value=1.6  Score=40.38  Aligned_cols=36  Identities=36%  Similarity=0.480  Sum_probs=30.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      ...+++|+|+|+|..|+.++..++..|. +|+.++..
T Consensus       140 ~~~~~~V~IIGaG~aGl~aA~~L~~~g~-~V~v~e~~  175 (485)
T TIGR01317       140 KRTGKKVAVVGSGPAGLAAADQLNRAGH-TVTVFERE  175 (485)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEecC
Confidence            3456899999999999999999999999 78888654

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=87.85  E-value=1.2  Score=36.02  Aligned_cols=35  Identities=37%  Similarity=0.541  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      ...+|+|+|+|.+|...++.+...|.++++.+|.+
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            34679999999999999999999999889999877

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=87.73  E-value=2.9  Score=36.07  Aligned_cols=73  Identities=27%  Similarity=0.432  Sum_probs=43.1

Q ss_pred             cceeEEcCCCCChhhhhhcccccchhhhhhhhc-CCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          157 DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       157 ~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~-~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      ....+++.+++.+-    ......|.+. +... ...++|.+||=+|+|+ |.+++..+ .+|+.+|+++|.++--.+.+
T Consensus       129 ~~~~i~lDPGlAFG----TG~HpTT~lc-L~~Le~~~~~g~~vlDvGcGS-GILaIAa~-kLGA~~v~g~DiDp~AV~aa  201 (300)
T COG2264         129 DELNIELDPGLAFG----TGTHPTTSLC-LEALEKLLKKGKTVLDVGCGS-GILAIAAA-KLGAKKVVGVDIDPQAVEAA  201 (300)
T ss_pred             CceEEEEccccccC----CCCChhHHHH-HHHHHHhhcCCCEEEEecCCh-hHHHHHHH-HcCCceEEEecCCHHHHHHH
Confidence            35667776655332    2222333332 3322 2356888988888743 55555444 46887999999998765544


Q ss_pred             H
Q 026087          236 L  236 (243)
Q Consensus       236 ~  236 (243)
                      +
T Consensus       202 ~  202 (300)
T COG2264         202 R  202 (300)
T ss_pred             H
Confidence            3

>PRK06436 glycerate dehydrogenase; Provisional

Probab=87.62  E-value=1.3  Score=38.40  Aligned_cols=35  Identities=26%  Similarity=0.287  Sum_probs=31.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      -.|++|.|+|.|.+|...++.++.+|+ +|++++++
T Consensus       120 L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~  154 (303)
T PRK06436        120 LYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRS  154 (303)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            368999999999999999999999999 99999875

>PRK07201 short chain dehydrogenase; Provisional

Probab=87.62  E-value=1.6  Score=41.56  Aligned_cols=40  Identities=28%  Similarity=0.399  Sum_probs=34.2

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       195 g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      ++++||.|+ |.+|...+..+...|+ +|+++++++++++.+
T Consensus       371 ~k~vlItGas~giG~~la~~l~~~G~-~V~~~~r~~~~~~~~  411 (657)
T PRK07201        371 GKVVLITGASSGIGRATAIKVAEAGA-TVFLVARNGEALDEL  411 (657)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            678999987 9999999988888999 899999988776544

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=87.58  E-value=2.6  Score=36.22  Aligned_cols=55  Identities=20%  Similarity=0.170  Sum_probs=38.3

Q ss_pred             cccccchhhhhhhhcCC-CCCCCEEEEEcCCH-HHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087          175 LGCGVPTGLGAVWNTAK-VEPGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPKK  231 (243)
Q Consensus       175 l~~~~~ta~~~~~~~~~-~~~g~~vlV~G~g~-~G~~a~~~a~~~G~~~vi~~~~~~~~  231 (243)
                      ++++....+. +++..+ --.|++++|+|.|. +|.-.+.++..+|+ +|+.+.+....
T Consensus       138 ~PcTp~ai~~-ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t~~  194 (286)
T PRK14175        138 VPCTPLGIME-ILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRSKD  194 (286)
T ss_pred             CCCcHHHHHH-HHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCchh
Confidence            3444333333 233333 45789999999854 99999999999999 88888765443

>PRK05855 short chain dehydrogenase; Validated

Probab=87.57  E-value=1.7  Score=40.41  Aligned_cols=41  Identities=32%  Similarity=0.451  Sum_probs=34.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .+.++||+|+ |.+|...+..+...|+ +|+.++++.++.+.+
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~  355 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGA-EVVASDIDEAAAERT  355 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4578999987 9999998888889999 799999988776544

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=87.56  E-value=2.4  Score=34.62  Aligned_cols=47  Identities=26%  Similarity=0.382  Sum_probs=38.3

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      +.....++++++||=+|+| .|..++-+++..+  +|+.+++.++-.+.+
T Consensus        64 m~~~L~~~~g~~VLEIGtG-sGY~aAvla~l~~--~V~siEr~~~L~~~A  110 (209)
T COG2518          64 MLQLLELKPGDRVLEIGTG-SGYQAAVLARLVG--RVVSIERIEELAEQA  110 (209)
T ss_pred             HHHHhCCCCCCeEEEECCC-chHHHHHHHHHhC--eEEEEEEcHHHHHHH
Confidence            4577889999999999875 4888888999887  899999988754444

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=87.46  E-value=1.5  Score=38.40  Aligned_cols=37  Identities=32%  Similarity=0.441  Sum_probs=33.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~  231 (243)
                      .|.+|.|+|.|.+|...+..++..|. +|++.+++++.
T Consensus       145 ~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~~  181 (330)
T PRK12480        145 KNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPNK  181 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChhH
Confidence            56789999999999999999999999 89999987654

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.45  E-value=1.5  Score=40.09  Aligned_cols=46  Identities=20%  Similarity=0.234  Sum_probs=36.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh-----HHHHHHHhcc
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK-----KFDRVLNALA  240 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~-----~~~~~~~~Ga  240 (243)
                      .+++|+|+|.|..|.+++.+++..|+ +|.+.|.++.     ..+.+++.|.
T Consensus        13 ~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~~~~~~~~~l~~~gi   63 (458)
T PRK01710         13 KNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKSEEELGEVSNELKELGV   63 (458)
T ss_pred             cCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCCCccchHHHHHHHhCCC
Confidence            36789999999999999999999999 8999987642     1234555554

>PRK07985 oxidoreductase; Provisional

Probab=87.36  E-value=1.9  Score=36.88  Aligned_cols=34  Identities=24%  Similarity=0.101  Sum_probs=28.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      .++++||+|+ +.+|...++.+...|+ +|+.+.++
T Consensus        48 ~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~   82 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLP   82 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCC
Confidence            5678999988 9999999999999999 78877643

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=87.32  E-value=1.4  Score=36.82  Aligned_cols=36  Identities=33%  Similarity=0.456  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      ...+|+|+|+|++|..++..+...|.+++..+|.+.
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   66 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT   66 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            447899999999999999999999998999887543

>PRK06932 glycerate dehydrogenase; Provisional

Probab=87.28  E-value=1.2  Score=38.83  Aligned_cols=34  Identities=35%  Similarity=0.527  Sum_probs=31.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      .|++|.|+|-|.+|...++.++.+|+ +|++.++.
T Consensus       146 ~gktvgIiG~G~IG~~va~~l~~fg~-~V~~~~~~  179 (314)
T PRK06932        146 RGSTLGVFGKGCLGTEVGRLAQALGM-KVLYAEHK  179 (314)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCC
Confidence            57899999999999999999999999 89998764

>PRK14031 glutamate dehydrogenase; Provisional

Probab=87.16  E-value=1.3  Score=40.32  Aligned_cols=33  Identities=27%  Similarity=0.379  Sum_probs=29.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID  226 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~  226 (243)
                      -.|.+|+|.|.|.+|..+++.+..+|+ +|+++.
T Consensus       226 l~g~rVaVQGfGNVG~~aA~~L~e~GA-kVVaVS  258 (444)
T PRK14031        226 LKGKVCLVSGSGNVAQYTAEKVLELGG-KVVTMS  258 (444)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEE
Confidence            478999999999999999999999999 888753

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=87.04  E-value=2.1  Score=36.14  Aligned_cols=34  Identities=32%  Similarity=0.390  Sum_probs=30.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID  226 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~  226 (243)
                      --+|.+|+|.|-|.+|..+++++..+|+ +|+++.
T Consensus        35 ~l~g~~vaIqGfGnVG~~~a~~L~e~Ga-kvvaVs   68 (254)
T cd05313          35 TLKGKRVAISGSGNVAQYAAEKLLELGA-KVVTLS   68 (254)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEE
Confidence            3468899999999999999999999999 888664

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK08317 hypothetical protein; Provisional

Probab=87.03  E-value=2.1  Score=34.70  Aligned_cols=52  Identities=29%  Similarity=0.411  Sum_probs=41.1

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHHh
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G-~~~vi~~~~~~~~~~~~~~~  238 (243)
                      +.....++++++||-+|+|. |..+..+++..+ ..++++++.+++.++.+++.
T Consensus        11 ~~~~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~   63 (241)
T PRK08317         11 TFELLAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKER   63 (241)
T ss_pred             HHHHcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence            34566788999999999876 788888888773 23899999999888777654

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=86.88  E-value=2  Score=39.00  Aligned_cols=35  Identities=31%  Similarity=0.467  Sum_probs=30.5

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      .+++++||+|+ |.+|...++.+...|+ +|+++++.
T Consensus       208 ~~g~~vlItGasggIG~~la~~l~~~Ga-~vi~~~~~  243 (450)
T PRK08261        208 LAGKVALVTGAARGIGAAIAEVLARDGA-HVVCLDVP  243 (450)
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            35789999988 9999999999999999 88888764

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=86.83  E-value=1.9  Score=40.22  Aligned_cols=44  Identities=20%  Similarity=0.235  Sum_probs=33.9

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       192 ~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .-.|++|||.|+ |++|.-.+.-....+.++++.+++++.++...
T Consensus       247 ~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i  291 (588)
T COG1086         247 MLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLI  291 (588)
T ss_pred             HcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHH
Confidence            346899999987 89997655444445888999999999876544

>PRK11761 cysM cysteine synthase B; Provisional

Probab=86.77  E-value=3.3  Score=35.63  Aligned_cols=54  Identities=17%  Similarity=0.158  Sum_probs=41.4

Q ss_pred             cCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHHhcccC
Q 026087          189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRVLNALAMS  242 (243)
Q Consensus       189 ~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~--~~~~~~~~~~~~Ga~~  242 (243)
                      ...+.+|++|+....|+.|.+.+..++.+|.+-++.+.  .++.|.+.++.+||+.
T Consensus        57 ~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v  112 (296)
T PRK11761         57 RGEIKPGDTLIEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYGAEL  112 (296)
T ss_pred             cCCCCCCCEEEEeCCChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEE
Confidence            44456778877766799999999999999995444443  3457899999999864

>PRK06487 glycerate dehydrogenase; Provisional

Probab=86.67  E-value=1.4  Score=38.34  Aligned_cols=34  Identities=35%  Similarity=0.448  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      .|++|.|+|.|.+|...+..++.+|+ +|++.++.
T Consensus       147 ~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~~  180 (317)
T PRK06487        147 EGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQLP  180 (317)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCC
Confidence            57899999999999999999999999 89998764

>PRK12831 putative oxidoreductase; Provisional

Probab=86.66  E-value=1.4  Score=40.40  Aligned_cols=36  Identities=31%  Similarity=0.338  Sum_probs=31.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      .+.+..|+|+|+|+.|+.++..++..|. +|++++..
T Consensus       137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~-~V~v~e~~  172 (464)
T PRK12831        137 EKKGKKVAVIGSGPAGLTCAGDLAKMGY-DVTIFEAL  172 (464)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhCCC-eEEEEecC
Confidence            4567899999999999999999999999 78888753

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=86.60  E-value=1.5  Score=38.66  Aligned_cols=36  Identities=31%  Similarity=0.332  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .+.+|+|+|+|++|..++..+..+|..++..+|.+.
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            346799999999999999999999998899898763

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=86.57  E-value=1.4  Score=38.23  Aligned_cols=37  Identities=19%  Similarity=0.257  Sum_probs=32.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      ..|.+|.|+|.|.+|...++.++..|+ +|+++++..+
T Consensus       134 l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~~  170 (312)
T PRK15469        134 REDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSRK  170 (312)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCC
Confidence            367899999999999999999999999 8999886543

>PRK06701 short chain dehydrogenase; Provisional

Probab=86.49  E-value=2.3  Score=36.27  Aligned_cols=37  Identities=24%  Similarity=0.237  Sum_probs=30.6

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       192 ~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .-++.++||+|+ |.+|...+..+...|+ +|+.+++++
T Consensus        43 ~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~   80 (290)
T PRK06701         43 KLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDE   80 (290)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            345789999987 9999998888888999 888887664

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=86.46  E-value=2.3  Score=38.57  Aligned_cols=45  Identities=24%  Similarity=0.375  Sum_probs=39.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      ....+++|.|.|.+|...++.+...|. .+++++.++++.+.+++.
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~~~~~~~~~  273 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPERAEELAEE  273 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHH
Confidence            346889999999999999999999999 899999999988877664

>PRK08223 hypothetical protein; Validated

Probab=86.39  E-value=1.4  Score=37.79  Aligned_cols=36  Identities=31%  Similarity=0.261  Sum_probs=31.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      ...+|+|+|+|++|..++..+..+|.+++..+|.+.
T Consensus        26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~   61 (287)
T PRK08223         26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV   61 (287)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            457899999999999999999999999999887543

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=86.28  E-value=1.6  Score=35.67  Aligned_cols=35  Identities=23%  Similarity=0.364  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      ...+|+|+|+|++|...+..+..+|..+++.+|.+
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            44679999999999999999999999889999876

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=86.27  E-value=1.7  Score=35.89  Aligned_cols=34  Identities=35%  Similarity=0.384  Sum_probs=30.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      ..+|+|+|+|++|...+..+..+|..+++.+|.+
T Consensus        21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D   54 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD   54 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            5789999999999999999999999899888644

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=86.23  E-value=1.9  Score=38.44  Aligned_cols=35  Identities=29%  Similarity=0.259  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      .+.+|+|+|+|++|..++..+...|.++++.+|.+
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            55689999999999999999999999999999876

>PRK00811 spermidine synthase; Provisional

Probab=86.23  E-value=1.9  Score=36.90  Aligned_cols=45  Identities=18%  Similarity=0.219  Sum_probs=35.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      .+.++||++|+|. |..+..+++..+.++|++++.+++-.+.+++.
T Consensus        75 ~~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~  119 (283)
T PRK00811         75 PNPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDERVVEVCRKY  119 (283)
T ss_pred             CCCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHH
Confidence            3567999998765 55566777776777999999999988888763

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.16  E-value=1.2  Score=41.39  Aligned_cols=37  Identities=24%  Similarity=0.343  Sum_probs=31.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      .+..+|+|+|+|..|++|+..+...|. +|++.+.++.
T Consensus        13 ~~~~~VIVIGAGiaGLsAArqL~~~G~-~V~VLEARdR   49 (501)
T KOG0029|consen   13 GKKKKVIVIGAGLAGLSAARQLQDFGF-DVLVLEARDR   49 (501)
T ss_pred             cCCCcEEEECCcHHHHHHHHHHHHcCC-ceEEEeccCC
Confidence            445679999999999999999999999 7888876553

>TIGR01138 cysM cysteine synthase B

Probab=86.09  E-value=3.7  Score=35.24  Aligned_cols=54  Identities=17%  Similarity=0.139  Sum_probs=40.4

Q ss_pred             cCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC--ChhHHHHHHHhcccC
Q 026087          189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRVLNALAMS  242 (243)
Q Consensus       189 ~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~--~~~~~~~~~~~Ga~~  242 (243)
                      ...+.++++|+....|+.|.+.+.+++.+|.+-++.+..  ++.|.+.++.+||+.
T Consensus        53 ~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v  108 (290)
T TIGR01138        53 RGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYGAEL  108 (290)
T ss_pred             cCCCCCCCEEEEECCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEE
Confidence            344567777666566999999999999999944444433  346899999999864

Alternate name: O-acetylserine (thiol)-lyase

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=86.01  E-value=0.44  Score=43.31  Aligned_cols=42  Identities=19%  Similarity=0.197  Sum_probs=34.4

Q ss_pred             hcCCCCCCCEEE----EEcC-CHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          188 NTAKVEPGSIVA----VFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       188 ~~~~~~~g~~vl----V~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      ...++++|+.+|    |+|+ |.+|.+++|+++..|+ +|+++...++
T Consensus        27 ~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~-~v~~~~~~~~   73 (450)
T PRK08261         27 PLRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGY-DVVANNDGGL   73 (450)
T ss_pred             cccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCC-eeeecCcccc
Confidence            456678888887    7765 9999999999999999 8888765554

>PLN02427 UDP-apiose/xylose synthase

Probab=85.95  E-value=2.1  Score=38.08  Aligned_cols=42  Identities=17%  Similarity=0.315  Sum_probs=32.4

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHH
Q 026087          193 EPGSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       193 ~~g~~vlV~G~-g~~G~~a~~~a~~~-G~~~vi~~~~~~~~~~~~  235 (243)
                      .+..+|||+|+ |.+|...++.+... |. +|++++++.++.+.+
T Consensus        12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~-~V~~l~r~~~~~~~l   55 (386)
T PLN02427         12 IKPLTICMIGAGGFIGSHLCEKLMTETPH-KVLALDVYNDKIKHL   55 (386)
T ss_pred             ccCcEEEEECCcchHHHHHHHHHHhcCCC-EEEEEecCchhhhhh
Confidence            34467999987 99999988888877 47 899998776655443

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=85.87  E-value=2.8  Score=36.05  Aligned_cols=34  Identities=32%  Similarity=0.419  Sum_probs=29.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      ++.++||+|+ +.+|...+..+...|+ +|+..+++
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~   45 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVA   45 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCC
Confidence            4678999987 8999998888888999 88888764

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=85.71  E-value=3.4  Score=34.22  Aligned_cols=32  Identities=38%  Similarity=0.555  Sum_probs=28.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEE
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI  225 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~  225 (243)
                      -.+.+|+|.|-|.+|..++.++...|+ +|+++
T Consensus        29 l~~~~v~I~G~G~VG~~~a~~L~~~g~-~vv~v   60 (227)
T cd01076          29 LAGARVAIQGFGNVGSHAARFLHEAGA-KVVAV   60 (227)
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEE
Confidence            367899999999999999999999999 88854

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=85.65  E-value=1.6  Score=40.16  Aligned_cols=36  Identities=36%  Similarity=0.468  Sum_probs=31.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      .+.+.+|+|+|+|..|+.++..++..|. +|++++..
T Consensus       140 ~~~~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~  175 (471)
T PRK12810        140 KRTGKKVAVVGSGPAGLAAADQLARAGH-KVTVFERA  175 (471)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecC
Confidence            3457899999999999999999999999 78888754

>PRK06128 oxidoreductase; Provisional

Probab=85.55  E-value=2.1  Score=36.63  Aligned_cols=34  Identities=21%  Similarity=0.183  Sum_probs=28.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      .++++||.|+ |.+|...+..+...|+ +|+.+.++
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~   88 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLP   88 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCC
Confidence            4689999987 9999999998888999 78776554

>PLN02556 cysteine synthase/L-3-cyanoalanine synthase

Probab=85.54  E-value=3.3  Score=36.87  Aligned_cols=55  Identities=15%  Similarity=0.138  Sum_probs=41.5

Q ss_pred             hcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHHhcccC
Q 026087          188 NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID--IDPKKFDRVLNALAMS  242 (243)
Q Consensus       188 ~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~--~~~~~~~~~~~~Ga~~  242 (243)
                      ....++||.+.+|... |+.|.+.+.+|+.+|.+-++++.  .+.+|.+.++.+||+.
T Consensus       103 ~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~V  160 (368)
T PLN02556        103 KKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAEL  160 (368)
T ss_pred             HcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEE
Confidence            3455778876677655 99999999999999994444433  3467899999999874

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=85.47  E-value=1.8  Score=36.74  Aligned_cols=35  Identities=31%  Similarity=0.479  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      .+.+|+|+|.|++|..++..+...|..+++.+|.+
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            45789999999999999999999998899998855

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=85.35  E-value=1.8  Score=38.10  Aligned_cols=36  Identities=33%  Similarity=0.362  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      ...+|+|+|+|.+|..++..+...|..++..+|.+.
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            347799999999999999999999999999998753

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=85.31  E-value=1.9  Score=39.03  Aligned_cols=35  Identities=29%  Similarity=0.477  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++..
T Consensus       150 ~gktvGIiG~G~IG~~vA~~~~~fGm-~V~~~d~~~  184 (409)
T PRK11790        150 RGKTLGIVGYGHIGTQLSVLAESLGM-RVYFYDIED  184 (409)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCc
Confidence            67899999999999999999999999 999998653

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=85.11  E-value=1.6  Score=41.48  Aligned_cols=35  Identities=26%  Similarity=0.283  Sum_probs=31.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      ...+|||+|+|++|..++..+...|.++++.+|.+
T Consensus       337 ~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D  371 (664)
T TIGR01381       337 SQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG  371 (664)
T ss_pred             hcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            46789999999999999999999999999999743

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=85.06  E-value=1.4  Score=39.46  Aligned_cols=33  Identities=39%  Similarity=0.566  Sum_probs=28.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      -.|+|+|+|..|++++..+...|. +|.+++..+
T Consensus        19 ~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~   51 (415)
T PRK07364         19 YDVAIVGGGIVGLTLAAALKDSGL-RIALIEAQP   51 (415)
T ss_pred             cCEEEECcCHHHHHHHHHHhcCCC-EEEEEecCC
Confidence            458999999999999988889999 888887654

>PRK06141 ornithine cyclodeaminase; Validated

Probab=85.04  E-value=3.7  Score=35.63  Aligned_cols=45  Identities=20%  Similarity=0.166  Sum_probs=35.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHH-HcCCCEEEEEcCChhHHHHHH
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~-~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      .+...+|+|+|+|..|...+..+. ..+.++|.++++++++.+.+.
T Consensus       122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a  167 (314)
T PRK06141        122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALA  167 (314)
T ss_pred             CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence            356789999999999999876444 467779999999988765543

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=84.94  E-value=2.6  Score=36.96  Aligned_cols=47  Identities=23%  Similarity=0.241  Sum_probs=36.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC-hhHHHHHHHhcc
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID-PKKFDRVLNALA  240 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~-~~~~~~~~~~Ga  240 (243)
                      -.+++|.|+|.|.+|.+.++-++..|. +|++..+. ++..+.+++.|+
T Consensus        15 L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~r~~~~s~~~A~~~G~   62 (330)
T PRK05479         15 IKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGLREGSKSWKKAEADGF   62 (330)
T ss_pred             hCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEECCchhhHHHHHHCCC
Confidence            456889999999999999999999999 77765554 344555556665

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=84.85  E-value=2  Score=38.10  Aligned_cols=36  Identities=31%  Similarity=0.296  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .+.+|+|+|+|++|..++..+..+|.+++..+|.+.
T Consensus        27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            347899999999999999999999999999998654

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=84.82  E-value=3.8  Score=35.14  Aligned_cols=39  Identities=21%  Similarity=0.118  Sum_probs=32.5

Q ss_pred             CCCCCEEEEEcCCH-HHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087          192 VEPGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPKK  231 (243)
Q Consensus       192 ~~~g~~vlV~G~g~-~G~~a~~~a~~~G~~~vi~~~~~~~~  231 (243)
                      .-.|++++|+|.|. +|...+.++...|+ +|..+.+..+.
T Consensus       156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~t~~  195 (283)
T PRK14192        156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSRTQN  195 (283)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCCchh
Confidence            45788999999976 99999999999999 89888764433

>PRK08618 ornithine cyclodeaminase; Validated

Probab=84.82  E-value=3.6  Score=35.88  Aligned_cols=45  Identities=16%  Similarity=0.051  Sum_probs=35.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHH-HHHcCCCEEEEEcCChhHHHHHH
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEG-AKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~-a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      .+..++++|+|+|..+...+.. +...++++|.++++++++.+.+.
T Consensus       124 ~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~  169 (325)
T PRK08618        124 REDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFA  169 (325)
T ss_pred             CCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHH
Confidence            3466789999999999877654 45678889999999988765443

>PLN02565 cysteine synthase

Probab=84.70  E-value=3.8  Score=35.73  Aligned_cols=54  Identities=22%  Similarity=0.183  Sum_probs=40.6

Q ss_pred             hcCCCCCCCEEEEE-cCCHHHHHHHHHHHHcCCCEEEEEc---CChhHHHHHHHhcccC
Q 026087          188 NTAKVEPGSIVAVF-GLGTVGLAVAEGAKAAGASRVIGID---IDPKKFDRVLNALAMS  242 (243)
Q Consensus       188 ~~~~~~~g~~vlV~-G~g~~G~~a~~~a~~~G~~~vi~~~---~~~~~~~~~~~~Ga~~  242 (243)
                      ....+.+|.+.+|. ..|+.|.+.+..++.+|+ +++++.   .++.|++.++.+||..
T Consensus        59 ~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~-~~~ivvp~~~~~~k~~~i~~~GA~V  116 (322)
T PLN02565         59 EKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGY-KLIITMPASMSLERRIILLAFGAEL  116 (322)
T ss_pred             HcCCCCCCCcEEEEECCChHHHHHHHHHHHcCC-eEEEEeCCCCcHHHHHHHHHcCCEE
Confidence            33445788666665 459999999999999999 555443   3457899999999863

>PLN02256 arogenate dehydrogenase

Probab=84.59  E-value=3.6  Score=35.62  Aligned_cols=51  Identities=14%  Similarity=0.129  Sum_probs=37.4

Q ss_pred             hcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       188 ~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      ....-..+.+|.|+|.|.+|...+..++..|. +|+++++++. .+.+.++|+
T Consensus        29 ~~~~~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~~-~~~a~~~gv   79 (304)
T PLN02256         29 EELEKSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSDY-SDIAAELGV   79 (304)
T ss_pred             HhhccCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECccH-HHHHHHcCC
Confidence            33333455789999999999988888888887 8999987764 355555554

>PRK06153 hypothetical protein; Provisional

Probab=84.46  E-value=1.6  Score=39.07  Aligned_cols=35  Identities=23%  Similarity=0.317  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      .+.+|+|+|+|++|...+..+..+|.++++.+|.+
T Consensus       175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D  209 (393)
T PRK06153        175 EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD  209 (393)
T ss_pred             hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence            45789999999999999999999999999998754

>PRK10717 cysteine synthase A; Provisional

Probab=84.36  E-value=4.7  Score=35.19  Aligned_cols=54  Identities=24%  Similarity=0.200  Sum_probs=40.0

Q ss_pred             cCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHHhcccC
Q 026087          189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRVLNALAMS  242 (243)
Q Consensus       189 ~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~--~~~~~~~~~~~~Ga~~  242 (243)
                      ....++|++|+....|+.|++.+..|+.+|.+-++.+.  .++.|++.++.+||+.
T Consensus        58 ~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V  113 (330)
T PRK10717         58 RGLLKPGGTIVEGTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKDLLRALGAEL  113 (330)
T ss_pred             cCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEE
Confidence            34456777776666799999999999999985444443  2345889999999864

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=84.35  E-value=3.1  Score=33.94  Aligned_cols=50  Identities=28%  Similarity=0.481  Sum_probs=34.8

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~-~~vi~~~~~~~~~~~~~  236 (243)
                      +.....+++|++||-+|+|. |+.++.+++..|. .+|+.++..++-.+.++
T Consensus        64 ~l~~L~l~pg~~VLeIGtGs-GY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~  114 (209)
T PF01135_consen   64 MLEALDLKPGDRVLEIGTGS-GYQAALLAHLVGPVGRVVSVERDPELAERAR  114 (209)
T ss_dssp             HHHHTTC-TT-EEEEES-TT-SHHHHHHHHHHSTTEEEEEEESBHHHHHHHH
T ss_pred             HHHHHhcCCCCEEEEecCCC-cHHHHHHHHhcCccceEEEECccHHHHHHHH
Confidence            45667799999999998743 6777777777664 26999999887655554

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=84.23  E-value=2.9  Score=33.54  Aligned_cols=47  Identities=21%  Similarity=0.186  Sum_probs=33.6

Q ss_pred             hcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       188 ~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      ......++.+||-+|+|. |..+..+++. |. +|+++|.+++-++.+++
T Consensus        24 ~~l~~~~~~~vLDiGcG~-G~~a~~La~~-g~-~V~gvD~S~~~i~~a~~   70 (197)
T PRK11207         24 EAVKVVKPGKTLDLGCGN-GRNSLYLAAN-GF-DVTAWDKNPMSIANLER   70 (197)
T ss_pred             HhcccCCCCcEEEECCCC-CHHHHHHHHC-CC-EEEEEeCCHHHHHHHHH
Confidence            334455678899998754 5566667764 77 99999999876665543

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=84.22  E-value=2.1  Score=37.58  Aligned_cols=39  Identities=15%  Similarity=0.089  Sum_probs=34.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~  231 (243)
                      -.+.+|||+|+|-+|.+++..+...|+.+++++.++.++
T Consensus       172 l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~  210 (338)
T PRK00676        172 SKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT  210 (338)
T ss_pred             ccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence            467899999999999999999999998789998877544

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=84.11  E-value=1.7  Score=36.34  Aligned_cols=36  Identities=33%  Similarity=0.476  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      +...|+|+|.|++|.+++..+...|++++..+|-++
T Consensus        29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~   64 (263)
T COG1179          29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDD   64 (263)
T ss_pred             hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccc
Confidence            346799999999999999999999999988887543

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=83.87  E-value=2.4  Score=37.99  Aligned_cols=36  Identities=22%  Similarity=0.199  Sum_probs=32.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      --.|.+|.|+|.|.+|...++.++.+|+ +|++.+..
T Consensus       113 ~l~gktvGIIG~G~IG~~va~~l~a~G~-~V~~~Dp~  148 (381)
T PRK00257        113 DLAERTYGVVGAGHVGGRLVRVLRGLGW-KVLVCDPP  148 (381)
T ss_pred             CcCcCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCc
Confidence            3468999999999999999999999999 89998753

>PRK07340 ornithine cyclodeaminase; Validated

Probab=83.85  E-value=4.6  Score=34.92  Aligned_cols=44  Identities=16%  Similarity=0.050  Sum_probs=36.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHH-HcCCCEEEEEcCChhHHHHH
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~-~~G~~~vi~~~~~~~~~~~~  235 (243)
                      -....+++|+|+|..|.+.+..+. ..+.++|.+++++.+|.+.+
T Consensus       122 ~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~  166 (304)
T PRK07340        122 PAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAF  166 (304)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHH
Confidence            356679999999999999888876 47888999999998876544

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=83.84  E-value=2.2  Score=38.00  Aligned_cols=35  Identities=29%  Similarity=0.389  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      ...+|+|+|+|++|..++..+...|..+++.+|.+
T Consensus        40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            45689999999999999999999999899999865

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=83.84  E-value=4.9  Score=32.71  Aligned_cols=51  Identities=22%  Similarity=0.326  Sum_probs=37.2

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~-~~vi~~~~~~~~~~~~~~  237 (243)
                      +.....++++++||-+|+|. |..+..+++..+. .+|++++.+++-.+.+++
T Consensus        68 ~~~~l~~~~g~~VLdIG~Gs-G~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~  119 (212)
T PRK13942         68 MCELLDLKEGMKVLEIGTGS-GYHAAVVAEIVGKSGKVVTIERIPELAEKAKK  119 (212)
T ss_pred             HHHHcCCCCcCEEEEECCcc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH
Confidence            44556788999999998753 5556667776653 389999999987766654

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=83.62  E-value=2.8  Score=37.57  Aligned_cols=41  Identities=22%  Similarity=0.271  Sum_probs=33.8

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087          190 AKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (243)
Q Consensus       190 ~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~  231 (243)
                      ..-..+.+|||+|+ |.+|...+..+...|. +|++++++..+
T Consensus        55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~~~~   96 (390)
T PLN02657         55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAREKSG   96 (390)
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEechhh
Confidence            33456778999987 9999999999988999 89999887643

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=83.45  E-value=4.3  Score=35.46  Aligned_cols=43  Identities=23%  Similarity=0.222  Sum_probs=35.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHH-HcCCCEEEEEcCChhHHHHH
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~-~~G~~~vi~~~~~~~~~~~~  235 (243)
                      +...+++|+|+|..+.+.+..+. ..+.++|.+++++.+|.+.+
T Consensus       127 ~~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~  170 (326)
T TIGR02992       127 EDSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEAL  170 (326)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHH
Confidence            45678999999999988777776 57888999999998876544

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=83.37  E-value=2.6  Score=37.74  Aligned_cols=34  Identities=24%  Similarity=0.344  Sum_probs=31.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI  227 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~  227 (243)
                      -.|.+|.|+|.|.+|...++.++.+|. +|++.+.
T Consensus       114 L~gktvGIIG~G~IG~~vA~~l~a~G~-~V~~~dp  147 (378)
T PRK15438        114 LHDRTVGIVGVGNVGRRLQARLEALGI-KTLLCDP  147 (378)
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence            478999999999999999999999999 8999874

>PRK08291 ectoine utilization protein EutC; Validated

Probab=83.37  E-value=4.6  Score=35.33  Aligned_cols=44  Identities=23%  Similarity=0.106  Sum_probs=35.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHH-HcCCCEEEEEcCChhHHHHHH
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~-~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      +...+++|+|+|..+.+.+..+. ..+.++|.+++++.++.+.+.
T Consensus       130 ~~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~  174 (330)
T PRK08291        130 EDASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYA  174 (330)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence            45578999999999998777666 467779999999988876553

>PLN02366 spermidine synthase

Probab=83.24  E-value=3.2  Score=36.07  Aligned_cols=45  Identities=22%  Similarity=0.152  Sum_probs=35.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      .+.++|||+|+|. |.++..+++.-+..+|.+++.+++-.+.+++.
T Consensus        90 ~~pkrVLiIGgG~-G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~  134 (308)
T PLN02366         90 PNPKKVLVVGGGD-GGVLREIARHSSVEQIDICEIDKMVIDVSKKF  134 (308)
T ss_pred             CCCCeEEEEcCCc-cHHHHHHHhCCCCCeEEEEECCHHHHHHHHHh
Confidence            4568999998866 55667778876767899999999888877763

>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen

Probab=83.12  E-value=4.5  Score=34.67  Aligned_cols=48  Identities=23%  Similarity=0.073  Sum_probs=36.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC--ChhHHHHHHHhcccC
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRVLNALAMS  242 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~--~~~~~~~~~~~Ga~~  242 (243)
                      .+.|+..++|..|.+.+.+++..|.+-++.+..  +++|++.++.+|++.
T Consensus        65 ~~~iv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~v  114 (304)
T cd01562          65 AKGVVAASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEV  114 (304)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEE
Confidence            455666677999999999999999954444432  345888999999863

Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=83.07  E-value=2.1  Score=36.02  Aligned_cols=33  Identities=30%  Similarity=0.301  Sum_probs=27.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      -.|+|+|+|+.|++++..+...|. +|+.++...
T Consensus        26 ~DVvIVGgGpAGl~AA~~la~~G~-~V~liEk~~   58 (257)
T PRK04176         26 VDVAIVGAGPSGLTAAYYLAKAGL-KVAVFERKL   58 (257)
T ss_pred             CCEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Confidence            358889999999998888888999 888887553

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=83.04  E-value=2.1  Score=43.00  Aligned_cols=36  Identities=25%  Similarity=0.147  Sum_probs=31.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      ..|++|+|+|+|+.|+.++..+...|. +|++++..+
T Consensus       304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~  339 (944)
T PRK12779        304 AVKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFH  339 (944)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCC
Confidence            358999999999999999999999999 888887543

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=83.02  E-value=2.9  Score=37.68  Aligned_cols=49  Identities=27%  Similarity=0.308  Sum_probs=37.4

Q ss_pred             chhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCC--EEEEEcCC
Q 026087          180 PTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS--RVIGIDID  228 (243)
Q Consensus       180 ~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~--~vi~~~~~  228 (243)
                      ...++++......-...+|++.|+|.-|.+++.+.+++|.+  +++++|+.
T Consensus       184 A~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~  234 (432)
T COG0281         184 AALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRK  234 (432)
T ss_pred             HHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecC
Confidence            34455554444445566788889999999999999999986  89999854

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=82.85  E-value=2.1  Score=41.24  Aligned_cols=37  Identities=35%  Similarity=0.293  Sum_probs=32.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .++..+|+|+|+|..|++++..++..|+ +|.++++.+
T Consensus        78 ~~~~~~VlIVGgGIaGLalAlaL~r~Gi-~V~V~Er~~  114 (668)
T PLN02927         78 KKKKSRVLVAGGGIGGLVFALAAKKKGF-DVLVFEKDL  114 (668)
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHhcCC-eEEEEeccc
Confidence            4666789999999999999999999999 899988754

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=82.79  E-value=2.6  Score=37.42  Aligned_cols=35  Identities=23%  Similarity=0.302  Sum_probs=30.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      ..+.+|||+|+ |.+|...+..+...|. +|+++++.
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r~   54 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKAEGH-YIIASDWK   54 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEec
Confidence            35689999987 9999999999999998 89988764

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=82.61  E-value=2.6  Score=37.02  Aligned_cols=37  Identities=35%  Similarity=0.372  Sum_probs=31.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .+.+.+|+|+|+|..|+.++..++..|. +|+.++..+
T Consensus        15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~   51 (352)
T PRK12770         15 PPTGKKVAIIGAGPAGLAAAGYLACLGY-EVHVYDKLP   51 (352)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            4567899999999999999999999998 788887653

>PLN02306 hydroxypyruvate reductase

Probab=82.56  E-value=2.6  Score=37.82  Aligned_cols=35  Identities=29%  Similarity=0.323  Sum_probs=31.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHH-HcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~-~~G~~~vi~~~~~~  229 (243)
                      .|++|.|+|.|.+|...++.++ .+|+ +|++.++..
T Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~~fGm-~V~~~d~~~  199 (386)
T PLN02306        164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (386)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCC-EEEEECCCC
Confidence            5789999999999999999975 9999 999998654

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=82.56  E-value=3.9  Score=35.46  Aligned_cols=45  Identities=27%  Similarity=0.235  Sum_probs=38.2

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       192 ~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      .++-..++|.|. .++|++.+..++..|+ .|..+.++.+|+..+++
T Consensus        30 ~k~~~hi~itggS~glgl~la~e~~~~ga-~Vti~ar~~~kl~~a~~   75 (331)
T KOG1210|consen   30 PKPRRHILITGGSSGLGLALALECKREGA-DVTITARSGKKLLEAKA   75 (331)
T ss_pred             cCccceEEEecCcchhhHHHHHHHHHccC-ceEEEeccHHHHHHHHh
Confidence            455578889876 8999999999999999 89999999999877654

>TIGR00292 thiazole biosynthesis enzyme

Probab=82.50  E-value=2.2  Score=35.85  Aligned_cols=33  Identities=27%  Similarity=0.288  Sum_probs=28.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      -.|+|+|+|+.|++++..+...|. +|+.+++..
T Consensus        22 ~DVvIVGgGpAGL~aA~~la~~G~-~V~vlEk~~   54 (254)
T TIGR00292        22 SDVIIVGAGPSGLTAAYYLAKNGL-KVCVLERSL   54 (254)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            348888999999999999999998 888887654

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below)

Probab=82.17  E-value=1.7  Score=31.72  Aligned_cols=36  Identities=11%  Similarity=0.351  Sum_probs=29.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHH
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~  232 (243)
                      ++|||.|.|.++.-+++-++.+|. +++++.+++++.
T Consensus         3 kkvLIanrGeia~r~~ra~r~~Gi-~tv~v~s~~d~~   38 (110)
T PF00289_consen    3 KKVLIANRGEIAVRIIRALRELGI-ETVAVNSNPDTV   38 (110)
T ss_dssp             SEEEESS-HHHHHHHHHHHHHTTS-EEEEEEEGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCC-cceeccCchhcc
Confidence            579999999999999999999999 777776666653

CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=82.15  E-value=2.8  Score=33.82  Aligned_cols=35  Identities=17%  Similarity=0.275  Sum_probs=30.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      ...+|+|+|+|++|.-.+..+..+|.+++..+|.+
T Consensus        20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            34789999999999999999999999899998754

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=82.11  E-value=4.5  Score=36.96  Aligned_cols=36  Identities=31%  Similarity=0.281  Sum_probs=30.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      ...|++|+|+|+|.+|+-++..+..+|+ +|..+.+.
T Consensus       269 ~~~gk~VvVIGgG~~a~d~A~~l~~~G~-~Vtlv~~~  304 (449)
T TIGR01316       269 VYAGKSVVVIGGGNTAVDSARTALRLGA-EVHCLYRR  304 (449)
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHcCC-EEEEEeec
Confidence            3568999999999999999999999999 67777654

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=82.04  E-value=2.8  Score=36.37  Aligned_cols=40  Identities=30%  Similarity=0.346  Sum_probs=33.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHH
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~  232 (243)
                      -.+.-|+|+|+|.+|..++.++...|++++-.+|-++-.+
T Consensus        72 l~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSl  111 (430)
T KOG2018|consen   72 LTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSL  111 (430)
T ss_pred             hcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccH
Confidence            3467788889999999999999999999998887655443

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=82.02  E-value=3.3  Score=38.72  Aligned_cols=34  Identities=41%  Similarity=0.597  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      .|++|.|+|.|.+|...+..++.+|+ +|+++++.
T Consensus       139 ~gktvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~  172 (526)
T PRK13581        139 YGKTLGIIGLGRIGSEVAKRAKAFGM-KVIAYDPY  172 (526)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCC
Confidence            57899999999999999999999999 99999874

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=81.99  E-value=2.7  Score=38.41  Aligned_cols=35  Identities=34%  Similarity=0.368  Sum_probs=30.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      ..+.+|+|+|+|..|+.++..++..|. +|+.++..
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~  165 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKAGH-SVTVFEAL  165 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            456899999999999999999999999 78888754

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR01139 cysK cysteine synthase A

Probab=81.99  E-value=7.2  Score=33.42  Aligned_cols=54  Identities=19%  Similarity=0.156  Sum_probs=39.2

Q ss_pred             cCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC--ChhHHHHHHHhcccC
Q 026087          189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRVLNALAMS  242 (243)
Q Consensus       189 ~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~--~~~~~~~~~~~Ga~~  242 (243)
                      .....+|++|+-..+|+.|.+.+..++..|.+-++.+..  ++.|++.++.+||+.
T Consensus        51 ~g~~~~g~~vv~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~k~~~~~~~GA~v  106 (298)
T TIGR01139        51 RGLLKPGKTIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAYGAEL  106 (298)
T ss_pred             cCCCCCCCEEEEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHHHHHHHHHcCCEE
Confidence            344567777654456999999999999999944444432  355888999999864

This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=81.90  E-value=11  Score=32.93  Aligned_cols=47  Identities=15%  Similarity=0.173  Sum_probs=32.2

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHH-HcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          193 EPGSIVAVFGL-GTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       193 ~~g~~vlV~G~-g~~G~~a~~~a~-~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      -..+.|+|.++ +-+++..+..++ ..+..++|+++ ++...++.+++|.
T Consensus       134 ~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vglT-S~~N~~Fve~lg~  182 (314)
T PF11017_consen  134 FGAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLT-SARNVAFVESLGC  182 (314)
T ss_pred             CCccEEEEeccchHHHHHHHHHhhccCCCceEEEEe-cCcchhhhhccCC
Confidence            34467777777 778877777777 55555899985 4555567777763

>PRK12831 putative oxidoreductase; Provisional

Probab=81.86  E-value=4.3  Score=37.26  Aligned_cols=36  Identities=33%  Similarity=0.336  Sum_probs=31.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      ...+++|+|+|+|.+|.-++..+..+|+ +|..+.+.
T Consensus       278 ~~~gk~VvVIGgG~va~d~A~~l~r~Ga-~Vtlv~r~  313 (464)
T PRK12831        278 IKVGKKVAVVGGGNVAMDAARTALRLGA-EVHIVYRR  313 (464)
T ss_pred             ccCCCeEEEECCcHHHHHHHHHHHHcCC-EEEEEeec
Confidence            4678999999999999999999999999 57777653

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=81.86  E-value=4.1  Score=34.14  Aligned_cols=32  Identities=34%  Similarity=0.488  Sum_probs=29.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEE
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI  225 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~  225 (243)
                      -.|.+++|.|.|.+|..+++.+..+|+ +++++
T Consensus        30 l~g~~v~IqGfG~VG~~~a~~l~~~Ga-~vv~v   61 (244)
T PF00208_consen   30 LEGKRVAIQGFGNVGSHAARFLAELGA-KVVAV   61 (244)
T ss_dssp             STTCEEEEEESSHHHHHHHHHHHHTTE-EEEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEE
Confidence            467999999999999999999999999 88887

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=81.83  E-value=5.9  Score=36.10  Aligned_cols=53  Identities=21%  Similarity=0.212  Sum_probs=40.5

Q ss_pred             cCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC---ChhHHHHHHHhcccC
Q 026087          189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI---DPKKFDRVLNALAMS  242 (243)
Q Consensus       189 ~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~---~~~~~~~~~~~Ga~~  242 (243)
                      ...+.+|++|+-...|+.|.+.+..++.+|. +++++..   +++|.+.++.+||+.
T Consensus        56 ~g~~~~g~~vv~~ssGN~g~alA~~a~~~G~-~~~iv~p~~~~~~k~~~~~~~GA~v  111 (454)
T TIGR01137        56 SGRLKPGDTIIEPTSGNTGIGLALVAAIKGY-KCIIVLPEKMSNEKVDVLKALGAEI  111 (454)
T ss_pred             cCCCCCCCEEEEeCCcHHHHHHHHHHHHcCC-eEEEEeCCCcCHHHHHHHHHCCCEE
Confidence            3445677777666679999999999999999 4444432   457899999999874

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=81.73  E-value=3.6  Score=38.44  Aligned_cols=34  Identities=41%  Similarity=0.580  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      .|++|.|+|.|.+|...+..++.+|+ +|+++++.
T Consensus       137 ~gktvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~  170 (525)
T TIGR01327       137 YGKTLGVIGLGRIGSIVAKRAKAFGM-KVLAYDPY  170 (525)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCC
Confidence            57899999999999999999999999 99999864

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PLN02477 glutamate dehydrogenase

Probab=81.65  E-value=3.1  Score=37.58  Aligned_cols=32  Identities=22%  Similarity=0.452  Sum_probs=29.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEE
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI  225 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~  225 (243)
                      -.|.+|+|.|-|.+|..+++++...|+ +|+++
T Consensus       204 l~g~~VaIqGfGnVG~~~A~~L~e~Ga-kVVaV  235 (410)
T PLN02477        204 IAGQTFVIQGFGNVGSWAAQLIHEKGG-KIVAV  235 (410)
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHcCC-EEEEE
Confidence            468899999999999999999999999 88855

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=81.64  E-value=3.1  Score=33.55  Aligned_cols=34  Identities=24%  Similarity=0.396  Sum_probs=30.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      ..+|+|+|+|++|.-.+..+...|.++++.+|.+
T Consensus        19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d   52 (198)
T cd01485          19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR   52 (198)
T ss_pred             hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            4789999999999999999999999889988754

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PTZ00414 10 kDa heat shock protein; Provisional

Probab=81.63  E-value=4.2  Score=29.13  Aligned_cols=23  Identities=30%  Similarity=0.406  Sum_probs=19.1

Q ss_pred             EEEEEEeCCCCC----cCCCCCEEeee
Q 026087           72 AGIVESVGEGVT----EVQPGDHVIPC   94 (243)
Q Consensus        72 vG~V~~~G~~~~----~~~~Gd~V~~~   94 (243)
                      .|+|+++|++..    .+++||+|+..
T Consensus        46 ~g~VvAVG~G~~~~~~~Vk~GD~Vl~~   72 (100)
T PTZ00414         46 EGTVVAVAAATKDWTPTVKVGDTVLLP   72 (100)
T ss_pred             eeEEEEECCCCccccceecCCCEEEEc
Confidence            499999999854    39999999854

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=81.59  E-value=2.7  Score=42.38  Aligned_cols=35  Identities=34%  Similarity=0.337  Sum_probs=31.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      ..+++|+|+|+|+.|+.++..++.+|. +|++++..
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~  571 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFERE  571 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEecc
Confidence            457899999999999999999999999 88888754

>PLN00011 cysteine synthase

Probab=81.39  E-value=6.8  Score=34.12  Aligned_cols=55  Identities=16%  Similarity=0.126  Sum_probs=39.6

Q ss_pred             hcCCCCCC-CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC--ChhHHHHHHHhcccC
Q 026087          188 NTAKVEPG-SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRVLNALAMS  242 (243)
Q Consensus       188 ~~~~~~~g-~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~--~~~~~~~~~~~Ga~~  242 (243)
                      ....+.+| ++|+....|+.|++.+.+++.+|.+-.+++..  ++.|++.++.+||+.
T Consensus        61 ~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V  118 (323)
T PLN00011         61 DKGLITPGKSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEV  118 (323)
T ss_pred             HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Confidence            44556777 55554455999999999999999944444432  346889999999864

>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D

Probab=81.25  E-value=3.9  Score=30.83  Aligned_cols=39  Identities=26%  Similarity=0.407  Sum_probs=27.2

Q ss_pred             hhcCCCCCCCEEEEEcC---CHHHHHHHHHHHHcCCCEEEEEc
Q 026087          187 WNTAKVEPGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGID  226 (243)
Q Consensus       187 ~~~~~~~~g~~vlV~G~---g~~G~~a~~~a~~~G~~~vi~~~  226 (243)
                      ....+.++||.++++..   .+.=+-+++.||.+|+ +||++.
T Consensus        96 ~~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~-~vIalT  137 (138)
T PF13580_consen   96 LALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGM-KVIALT  137 (138)
T ss_dssp             HHHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT--EEEEEE
T ss_pred             HHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-EEEEEe
Confidence            34456899999999843   4666779999999999 888874

...

>TIGR01136 cysKM cysteine synthases

Probab=81.22  E-value=8.4  Score=33.07  Aligned_cols=54  Identities=19%  Similarity=0.165  Sum_probs=40.0

Q ss_pred             cCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC--ChhHHHHHHHhcccC
Q 026087          189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRVLNALAMS  242 (243)
Q Consensus       189 ~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~--~~~~~~~~~~~Ga~~  242 (243)
                      .....+|++|+-...|+.|.+.+..|+.+|.+-++.+..  ++.|++.++.+||+.
T Consensus        52 ~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~v  107 (299)
T TIGR01136        52 RGLLKPGDTIIEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLRAYGAEL  107 (299)
T ss_pred             cCCCCCCCEEEEeCCChHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEE
Confidence            344567777655566999999999999999954444433  356889999999863

This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.

>PRK09414 glutamate dehydrogenase; Provisional

Probab=81.10  E-value=7.4  Score=35.60  Aligned_cols=32  Identities=34%  Similarity=0.422  Sum_probs=29.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEE
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI  225 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~  225 (243)
                      -.|.+|+|.|-|.+|..+++++..+|+ +|+++
T Consensus       230 l~g~rVaIqGfGnVG~~~A~~L~~~Ga-kVVav  261 (445)
T PRK09414        230 FEGKRVVVSGSGNVAIYAIEKAQQLGA-KVVTC  261 (445)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEE
Confidence            468999999999999999999999999 88888

>PRK07411 hypothetical protein; Validated

Probab=81.02  E-value=3  Score=37.43  Aligned_cols=34  Identities=29%  Similarity=0.353  Sum_probs=30.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      ..+|+|+|+|++|..+++.+..+|.++++.+|.+
T Consensus        38 ~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D   71 (390)
T PRK07411         38 AASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD   71 (390)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            4689999999999999999999999999998754

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=80.99  E-value=3  Score=37.47  Aligned_cols=35  Identities=26%  Similarity=0.278  Sum_probs=30.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      ...+|||+|+|++|..++..+..+|.+++..+|.+
T Consensus        41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D   75 (392)
T PRK07878         41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD   75 (392)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            34689999999999999999999999999988754

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=80.97  E-value=6.8  Score=31.63  Aligned_cols=50  Identities=20%  Similarity=0.224  Sum_probs=35.9

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G-~~~vi~~~~~~~~~~~~~  236 (243)
                      +.....++++++||=+|+|. |..++.+++..+ ..+|++++.+++-.+.++
T Consensus        64 ~~~~l~~~~~~~VLDiG~Gs-G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~  114 (205)
T PRK13944         64 MCELIEPRPGMKILEVGTGS-GYQAAVCAEAIERRGKVYTVEIVKELAIYAA  114 (205)
T ss_pred             HHHhcCCCCCCEEEEECcCc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH
Confidence            34556678999999998754 666667777654 238999999988666554

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=80.77  E-value=2.4  Score=39.71  Aligned_cols=33  Identities=39%  Similarity=0.485  Sum_probs=28.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      -.|+|+|+|+.|++++..+...|. +|++++..+
T Consensus        24 ~dVlIVGaGpaGl~lA~~L~~~G~-~v~viE~~~   56 (547)
T PRK08132         24 HPVVVVGAGPVGLALAIDLAQQGV-PVVLLDDDD   56 (547)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-cEEEEeCCC
Confidence            359999999999999988888999 788887654

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=80.74  E-value=4  Score=35.81  Aligned_cols=48  Identities=23%  Similarity=0.294  Sum_probs=39.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      -..|++|.|+|.|.+|...++-++..|+ .+....+.+.+.+...+.++
T Consensus       159 ~~~gK~vgilG~G~IG~~ia~rL~~Fg~-~i~y~~r~~~~~~~~~~~~~  206 (336)
T KOG0069|consen  159 DLEGKTVGILGLGRIGKAIAKRLKPFGC-VILYHSRTQLPPEEAYEYYA  206 (336)
T ss_pred             cccCCEEEEecCcHHHHHHHHhhhhccc-eeeeecccCCchhhHHHhcc
Confidence            3467999999999999999999999995 78888777777777766655

>PLN02206 UDP-glucuronate decarboxylase

Probab=80.71  E-value=3.4  Score=37.71  Aligned_cols=34  Identities=35%  Similarity=0.377  Sum_probs=29.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC
Q 026087          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI  227 (243)
Q Consensus       193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~  227 (243)
                      .++.+|||+|+ |.+|...+..+...|. +|+++++
T Consensus       117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~  151 (442)
T PLN02206        117 RKGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDN  151 (442)
T ss_pred             cCCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeC
Confidence            35688999987 9999999999999999 8988864

>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia

Probab=80.59  E-value=6.4  Score=34.22  Aligned_cols=50  Identities=22%  Similarity=0.229  Sum_probs=37.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC--ChhHHHHHHHhcccC
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRVLNALAMS  242 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~--~~~~~~~~~~~Ga~~  242 (243)
                      .++++|+..+.|..|.+.+.+++.+|.+-++++..  ++.|.+.++.+||+.
T Consensus        49 ~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~l~~~GA~v  100 (316)
T cd06448          49 NECVHVVCSSGGNAGLAAAYAARKLGVPCTIVVPESTKPRVVEKLRDEGATV  100 (316)
T ss_pred             ccCCeEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEE
Confidence            34667666677999999999999999954444432  456889999999863

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=80.45  E-value=3.2  Score=37.89  Aligned_cols=36  Identities=31%  Similarity=0.400  Sum_probs=30.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      ..+.+|+|+|+|..|+.++..+...|. +|+.++..+
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~-~V~lie~~~  173 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEARD  173 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCC
Confidence            556889999999999999999999998 888887553

>PLN02735 carbamoyl-phosphate synthase

Probab=80.42  E-value=3.1  Score=42.49  Aligned_cols=53  Identities=21%  Similarity=0.297  Sum_probs=37.8

Q ss_pred             cccchhhhhhhhcCCCCCCCEEEEEcCCHH-----------HHHHHHHHHHcCCCEEEEEcCChh
Q 026087          177 CGVPTGLGAVWNTAKVEPGSIVAVFGLGTV-----------GLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       177 ~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~-----------G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      .+...||++......-+.=++|||+|+|.+           |..++..++.+|+ +|+.++.+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~-~Vi~vd~np~   68 (1102)
T PLN02735          5 DTVTRAWSAATKAGKRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGY-EVVLINSNPA   68 (1102)
T ss_pred             ccceecccccccCCcccCCCEEEEECCCccccccceeecchHHHHHHHHHHcCC-EEEEEeCCcc
Confidence            344556775533333334469999999874           5668999999999 8999988763

>PLN02356 phosphateglycerate kinase

Probab=80.33  E-value=7.2  Score=35.46  Aligned_cols=53  Identities=21%  Similarity=0.186  Sum_probs=39.1

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHHhcccC
Q 026087          190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRVLNALAMS  242 (243)
Q Consensus       190 ~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~--~~~~~~~~~~~~Ga~~  242 (243)
                      ...+++.+|+...+|+.|.+.+.+++.+|++-++++.  .+++|.+.++.+||+.
T Consensus        99 g~~~~~g~VveaSSGN~g~alA~~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeV  153 (423)
T PLN02356         99 GQLFPGGVVTEGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQILEALGATV  153 (423)
T ss_pred             CccCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCCCcHHHHHHHHHcCCEE
Confidence            3344666554456799999999999999995444443  3457899999999874

>PRK08198 threonine dehydratase; Provisional

Probab=80.31  E-value=6.5  Score=35.36  Aligned_cols=49  Identities=18%  Similarity=0.006  Sum_probs=37.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC--ChhHHHHHHHhcccC
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRVLNALAMS  242 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~--~~~~~~~~~~~Ga~~  242 (243)
                      .++.|+..++|..|.+.+..|+.+|.+-++++..  +..|.+.++.+||+.
T Consensus        69 ~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V  119 (404)
T PRK08198         69 RARGVVAASAGNHAQGVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEV  119 (404)
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEE
Confidence            3556666677999999999999999955555543  346888899999864

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=80.24  E-value=3.2  Score=32.90  Aligned_cols=38  Identities=26%  Similarity=0.251  Sum_probs=27.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~  231 (243)
                      -++++|+|+|+|..+.-++..+...|. +|..+.+++.+
T Consensus       165 ~~~k~V~VVG~G~SA~d~a~~l~~~g~-~V~~~~R~~~~  202 (203)
T PF13738_consen  165 FKGKRVVVVGGGNSAVDIAYALAKAGK-SVTLVTRSPIW  202 (203)
T ss_dssp             CTTSEEEEE--SHHHHHHHHHHTTTCS-EEEEEESS---
T ss_pred             cCCCcEEEEcChHHHHHHHHHHHhhCC-EEEEEecCCCC
Confidence            467999999999988877777777775 89988887643

...

>PRK07048 serine/threonine dehydratase; Validated

Probab=80.16  E-value=6.5  Score=34.16  Aligned_cols=47  Identities=19%  Similarity=0.113  Sum_probs=35.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHHhcccC
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRVLNALAMS  242 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~--~~~~~~~~~~~~Ga~~  242 (243)
                      +.|+..+.|+.|.+.+..++.+|++-++++.  .++.|.+.++.+||+.
T Consensus        73 ~~vv~aSsGN~g~alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV  121 (321)
T PRK07048         73 AGVVTFSSGNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEV  121 (321)
T ss_pred             CcEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEE
Confidence            3455557799999999999999995444443  2345888889999863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	243
4dl9_A	396	Crystal Structure Of S-nitrosoglutathione Reductase		1e-123
3uko_A	378	Crystal Structure Of S-Nitrosoglutathione Reductase		1e-119
3qj5_A	374	S-Nitrosoglutathione Reductase (Gsnor) In Complex W		9e-81
1mc5_A	374	Ternary Complex Of Human Glutathione-Dependent Form		1e-80
1teh_A	373	Structure Of Human Liver Chichi Alcohol Dehydrogena		1e-80
2fzw_A	373	Structure Of The Binary Complex Of The E67l Mutant		8e-80
3cos_A	381	Crystal Structure Of Human Class Ii Alcohol Dehydro		7e-73
1cdo_A	374	Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Co		5e-70
1e3l_A	376	P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase		4e-65
1e3e_A	376	Mouse Class Ii Alcohol Dehydrogenase Complex With N		6e-64
1hdy_A	374	Three-Dimensional Structures Of Three Human Alcohol		1e-63
1p0c_A	373	Crystal Structure Of The Nadp(H)-Dependent Vertebra		3e-63
1htb_A	374	Crystallization Of Human Beta3 Alcohol Dehydrogenas		1e-62
1hdx_A	374	Three-Dimensional Structures Of Three Human Alcohol		1e-62
1agn_A	373	X-Ray Structure Of Human Sigma Alcohol Dehydrogenas		2e-62
1hdz_A	374	Three-Dimensional Structures Of Three Human Alcohol		2e-62
1qlh_A	374	Horse Liver Alcohol Dehydrogenase Complexed To Nad		3e-62
1ju9_A	374	Horse Liver Alcohol Dehydrogenase Val292ser Mutant		3e-62
6adh_A	374	Structure Of Triclinic Ternary Complex Of Horse Liv		3e-62
1n8k_A	374	Horse Liver Alcohol Dehydrogenase Val292thr Mutant		3e-62
3oq6_A	374	Horse Liver Alcohol Dehydrogenase A317c Mutant Comp		4e-62
1d1t_A	373	Mutant Of Human Sigma Alcohol Dehydrogenase With Le		5e-62
1axe_A	374	Crystal Structure Of The Active-Site Mutant Phe93->		7e-62
1axg_A	374	Crystal Structure Of The Val203->ala Mutant Of Live		1e-61
1mgo_A	374	Horse Liver Alcohol Dehydrogenase Phe93ala Mutant L		1e-61
1qv6_A	374	Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG		1e-61
1a71_A	374	Ternary Complex Of An Active Site Double Mutant Of		2e-61
1ee2_B	373	The Structure Of Steroid-Active Alcohol Dehydrogena		4e-61
1ht0_A	374	Human Gamma-2 Alcohol Dehydrogense Length = 374		9e-61
1hso_A	374	Human Alpha Alcohol Dehydrogenase (Adh1a) Length =		1e-60
1ee2_A	373	The Structure Of Steroid-Active Alcohol Dehydrogena		1e-60
1f8f_A	371	Crystal Structure Of Benzyl Alcohol Dehydrogenase F		1e-25
3two_A	348	The Crystal Structure Of Cad From Helicobacter Pylo		4e-16
1rjw_A	339	Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd		3e-15
3pii_A	339	Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog		4e-15
1llu_A	342	The Ternary Complex Of Pseudomonas Aeruginosa Alcoh		5e-15
2h6e_A	344	Crystal Structure Of The D-Arabinose Dehydrogenase		6e-15
3meq_A	365	Crystal Structure Of Alcohol Dehydrogenase From Bru		2e-14
3s1l_A	340	Crystal Structure Of Apo-Form Furx Length = 340		5e-14
4ilk_A	359	Crystal Structure Of Short Chain Alcohol Dehydrogen		1e-13
2hcy_A	347	Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevi		7e-13
1uuf_A	369	Crystal Structure Of A Zinc-Type Alcohol Dehydrogen		9e-13
1h2b_A	359	Crystal Structure Of The Alcohol Dehydrogenase From		1e-12
2eih_A	343	Crystal Structure Of Nad-Dependent Alcohol Dehydrog		2e-11
1e3j_A	352	Ketose Reductase (Sorbitol Dehydrogenase) From Silv		7e-11
4eex_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		2e-10
4eez_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		3e-10
2xaa_A	345	Alcohol Dehydrogenase Adh-'a' From Rhodococcus Rube		3e-10
2eer_A	347	Structural Study Of Project Id St2577 From Sulfolob		7e-10
2dq4_A	343	Crystal Structure Of Threonine 3-Dehydrogenase Leng		8e-10
1vj0_A	380	Crystal Structure Of Alcohol Dehydrogenase (Tm0436)		1e-09
3gfb_A	350	L-Threonine Dehydrogenase (Tktdh) From The Hyperthe		5e-09
1r37_A	347	Alcohol Dehydrogenase From Sulfolobus Solfataricus		9e-09
1nto_A	347	N249y Mutant Of Alcohol Dehydrogenase From The Arch		9e-09
1jvb_A	347	Alcohol Dehydrogenase From The Archaeon Sulfolobus		1e-08
3i4c_A	347	Crystal Structure Of Sulfolobus Solfataricus Adh(Ss		1e-08
4a2c_A	346	Crystal Structure Of Galactitol-1-Phosphate Dehydro		2e-08
2dfv_A	347	Hyperthermophilic Threonine Dehydrogenase From Pyro		4e-08
2d8a_A	348	Crystal Structure Of Ph0655 From Pyrococcus Horikos		4e-08
1pl7_A	356	Human Sorbitol Dehydrogenase (Apo) Length = 356		4e-08
4ej6_A	370	Crystal Structure Of A Putative Zinc-Binding Dehydr		5e-08
1yqd_A	366	Sinapyl Alcohol Dehydrogenase Complexed With Nadp+		8e-08
1pl6_A	356	Human SdhNADHINHIBITOR COMPLEX Length = 356		1e-07
3qe3_A	355	Sheep Liver Sorbitol Dehydrogenase Length = 355		1e-07
2cd9_A	366	Sulfolobus Solfataricus Glucose Dehydrogenase 1 - A		2e-07
2cdb_A	366	Sulfolobus Solfataricus Glucose Dehydrogenase 1 In		9e-07
1kol_A	398	Crystal Structure Of Formaldehyde Dehydrogenase Len		2e-06
1qor_A	327	Crystal Structure Of Escherichia Coli Quinone Oxido		1e-05
1jqb_A	351	Alcohol Dehydrogenase From Clostridium Beijerinckii		2e-05
3jyl_A	325	Crystal Structures Of Pseudomonas Syringae Pv. Toma		3e-05
3fpl_A	351	Chimera Of Alcohol Dehydrogenase By Exchange Of The		3e-05
3m6i_A	363	L-Arabinitol 4-Dehydrogenase Length = 363		3e-05
1ped_A	351	Bacterial Secondary Alcohol Dehydrogenase (Apo-Form		4e-05
2b83_A	351	A Single Amino Acid Substitution In The Clostridium		9e-05
2b5w_A	357	Crystal Structure Of D38c Glucose Dehydrogenase Mut		1e-04
3ftn_A	352	Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDRO		1e-04
1wly_A	333	Crystal Structure Of 2-haloacrylate Reductase Lengt		3e-04
1ykf_A	352	Nadp-Dependent Alcohol Dehydrogenase From Thermoana		3e-04
2nvb_A	352	Contribution Of Pro275 To The Thermostability Of Th		3e-04
3fsr_A	352	Chimera Of Alcohol Dehydrogenase By Exchange Of The		3e-04
2dph_A	398	Crystal Structure Of Formaldehyde Dismutase Length		4e-04

>pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ Length = 396

Iteration: 1
 Score =  437 bits (1125), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/236 (88%), Positives = 217/236 (91%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           +T+GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVR+K+L+TALCHTDAYTWSGKDPEG
Sbjct: 19  ATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKVLYTALCHTDAYTWSGKDPEG 78
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           LFPC+LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR ATG
Sbjct: 79  LFPCVLGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATG 138
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP APL+KVCLLGCGVPT
Sbjct: 139 VGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLEKVCLLGCGVPT 198
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRVLN 237
           GLGAVWNTAKVEPGSIVAVFGLGTV             SR+IGIDID KKFDR  N
Sbjct: 199 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDRAKN 254

>pdb|3UKO|A Chain A, Crystal Structure Of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex With Nadh Length = 378

Iteration: 1
 Score =  424 bits (1091), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 203/232 (87%), Positives = 213/232 (91%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           +T+GQVITCKAAVA+EPNKPLVIEDVQVAPPQAGEVRIKIL+TALCHTDAYTWSGKDPEG
Sbjct: 1   ATQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEG 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           LFPCILGHEAAGIVESVGEGVTEVQ GDHVIPCYQAECRECKFCKSGKTNLCGKVR ATG
Sbjct: 61  LFPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATG 120
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G+MMNDRKSRFS+NGKPIYHFMGTSTFSQYTVVHDVSVAKIDP APLDKVCLLGCGVPT
Sbjct: 121 VGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPT 180
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFD 233
           GLGAVWNTAKVEPGS VA+FGLGTV             SR+IGIDID KK++
Sbjct: 181 GLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYE 232

>pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With N6022 Length = 374

Iteration: 1
 Score =  296 bits (757), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 149/229 (65%), Positives = 173/229 (75%), Gaps = 1/229 (0%)
Query: 6   QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
           +VI CKAAVAWE  KPL IE+++VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP 
Sbjct: 4   EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 63
Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
           ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +
Sbjct: 64  ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 122
Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
           M D  SRF+  GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct: 123 MPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 182
Query: 186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
             NTAK+EPGS+ AVFGLG V             SR+IG+DI+  KF R
Sbjct: 183 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFAR 231

>pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With S-(Hydroxymethyl)glutathione And Nadh Length = 374

Iteration: 1
 Score =  295 bits (756), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 149/229 (65%), Positives = 173/229 (75%), Gaps = 1/229 (0%)
Query: 6   QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
           +VI CKAAVAWE  KPL IE+++VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP 
Sbjct: 4   EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 63
Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
           ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +
Sbjct: 64  ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 122
Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
           M D  SRF+  GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct: 123 MPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 182
Query: 186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
             NTAK+EPGS+ AVFGLG V             SR+IG+DI+  KF R
Sbjct: 183 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFAR 231

>pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A Glutathione- Dependent Formaldehyde Dehydrogenase) Length = 373

Iteration: 1
 Score =  295 bits (756), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 149/229 (65%), Positives = 173/229 (75%), Gaps = 1/229 (0%)
Query: 6   QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
           +VI CKAAVAWE  KPL IE+++VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP 
Sbjct: 3   EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 62
Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
           ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +
Sbjct: 63  ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 121
Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
           M D  SRF+  GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct: 122 MPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 181
Query: 186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
             NTAK+EPGS+ AVFGLG V             SR+IG+DI+  KF R
Sbjct: 182 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFAR 230

>pdb|2FZW|A Chain A, Structure Of The Binary Complex Of The E67l Mutant Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With Nad(H) Length = 373

Iteration: 1
 Score =  293 bits (749), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 148/229 (64%), Positives = 172/229 (75%), Gaps = 1/229 (0%)
Query: 6   QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
           +VI CKAAVAWE  KPL IE+++VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP 
Sbjct: 3   EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 62
Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
           ILGH  AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +
Sbjct: 63  ILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 121
Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
           M D  SRF+  GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct: 122 MPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 181
Query: 186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
             NTAK+EPGS+ AVFGLG V             SR+IG+DI+  KF R
Sbjct: 182 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFAR 230

>pdb|3COS|A Chain A, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase (Adh4) In Complex With Nad And Zn Length = 381

Iteration: 1
 Score =  270 bits (689), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 137/235 (58%), Positives = 164/235 (69%), Gaps = 3/235 (1%)
Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M T+G+VI CKAA+AWE  KPL IE+V+VAPP+A EVRI+I+ T+LCHTDA     K   
Sbjct: 2   MGTKGKVIKCKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSKFEG 61
Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKV---R 117
             FP I+GHEAAGIVES+G GVT V+PGD VIP Y   CR+CKFC S  TNLCGK+   +
Sbjct: 62  LAFPVIVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNLK 121
Query: 118 GATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGC 177
                  +M D+ SRF+  GKP+YHF GTSTFSQYTVV D+++AKID  A L++VCLLGC
Sbjct: 122 SPASDQQLMEDKTSRFTCKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLLGC 181
Query: 178 GVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKF 232
           G  TG GA  N AKV PGS  AVFGLG V             SR+IGIDI+ +KF
Sbjct: 182 GFSTGYGAAINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKF 236

>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed With Nicotinamide Adenine Dinucleotide (Nad), And Zinc Length = 374

Iteration: 1
 Score =  260 bits (664), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 133/235 (56%), Positives = 170/235 (72%), Gaps = 5/235 (2%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAY-TWSGKDPE 60
           +T G+VI CKAAVAWE NKPLVIE+++V  P A E+RIKI+ T +CHTD Y  + GK  +
Sbjct: 1   ATVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKD 60
Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRG-A 119
           G FP +LGHE AGIVESVG GVTE QPG+ VIP + ++C EC+FC+S KTN C  V+G A
Sbjct: 61  G-FPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQC--VKGWA 117
Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 179
             +  +M+ +++RF+  G+ +  F+GTSTFSQYTVV+ ++VAKIDP APLD VCLLGCGV
Sbjct: 118 NESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGV 177
Query: 180 PTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
            TG GA  NTAKVEPGS  AVFGLG V              R+I +D++P KF++
Sbjct: 178 STGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEK 232

>pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  244 bits (622), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 122/237 (51%), Positives = 162/237 (68%), Gaps = 8/237 (3%)
Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-- 60
           T+G+VI CKAA+AW+   PL IE+++V+PP+A EVRI+++ T +CHTD    +  DP+  
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCHTDI---NATDPKKK 58
Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
            LFP +LGHE AGIVESVG GVT  +PGD VIP +  +C+ CK C S  TNLCGK+R   
Sbjct: 59  ALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFK 118
Query: 121 GAGV---MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGC 177
              +   +M DR SRF+  G+ IYHFMG S+FSQYTVV + ++A++D +A L++VCL+GC
Sbjct: 119 YPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGC 178
Query: 178 GVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G  +G GA  NTAKV PGS  AVFGLG V             SR+I IDI+ +KF +
Sbjct: 179 GFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPK 235

>pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  240 bits (612), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 121/237 (51%), Positives = 161/237 (67%), Gaps = 8/237 (3%)
Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-- 60
           T+G+VI CKAA+AW+   PL IE+++V+PP+A EVRI+++ T +C TD    +  DP+  
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDI---NATDPKKK 58
Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
            LFP +LGHE AGIVESVG GVT  +PGD VIP +  +C+ CK C S  TNLCGK+R   
Sbjct: 59  ALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFK 118
Query: 121 GAGV---MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGC 177
              +   +M DR SRF+  G+ IYHFMG S+FSQYTVV + ++A++D +A L++VCL+GC
Sbjct: 119 YPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGC 178
Query: 178 GVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G  +G GA  NTAKV PGS  AVFGLG V             SR+I IDI+ +KF +
Sbjct: 179 GFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPK 235

>pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  239 bits (609), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 126/233 (54%), Positives = 156/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IEDV+VAPP+A EVRIK++   +CHTD +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICHTDDHVVSGNLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P ILGHEAAGIVESVGEGVT V+PGD VIP +  +C +C+ CK+ ++N C K      
Sbjct: 61  L-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G +  D   RF+  GKPI+HF+GTSTFSQYTVV + +VAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTL-QDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+  N AKV PGS  AVFGLG V             +R+I +DI+  KF +
Sbjct: 179 GYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAK 231

>pdb|1P0C|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Vertebrate Alcohol Dehydrogenase (Adh8) Length = 373

Iteration: 1
 Score =  238 bits (607), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 125/236 (52%), Positives = 155/236 (65%), Gaps = 3/236 (1%)
Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M T G+ ITCKAAVAWEP+KPL +E + VAPP+A EVRIKIL + +C +D+       P 
Sbjct: 1   MCTAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPS 60
Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
             FP ILGHEA G+VES+G GVT V+PGD VIP +  +C  C+ CKS  +N C K     
Sbjct: 61  K-FPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGA 119
Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
             G +M D  SRF+  GKPIY+ MGTSTF++YTVV D++VAKIDP+APL+  CL+GCG  
Sbjct: 120 KTG-LMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLES-CLIGCGFA 177
Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRVL 236
           TG GA  NTAKV PGS  AVFGLG V             SR+IG+     KF + +
Sbjct: 178 TGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI 233

>pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10 MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+ And 1 Mm 4-Iodopyrazole At 25 C Length = 374

Iteration: 1
 Score =  236 bits (601), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 125/233 (53%), Positives = 155/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IEDV+VAPP+A EVRIK++   +C TD +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P ILGHEAAGIVESVGEGVT V+PGD VIP +  +C +C+ CK+ ++N C K      
Sbjct: 61  L-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G +  D   RF+  GKPI+HF+GTSTFSQYTVV + +VAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTL-QDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+  N AKV PGS  AVFGLG V             +R+I +DI+  KF +
Sbjct: 179 GYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAK 231

>pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  236 bits (601), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 125/233 (53%), Positives = 155/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IEDV+VAPP+A EVRIK++   +C TD +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P ILGHEAAGIVESVGEGVT V+PGD VIP +  +C +C+ CK+ ++N C K      
Sbjct: 61  L-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G +  D   RF+  GKPI+HF+GTSTFSQYTVV + +VAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTL-QDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+  N AKV PGS  AVFGLG V             +R+I +DI+  KF +
Sbjct: 179 GYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAK 231

>pdb|1AGN|A Chain A, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase Length = 373

Iteration: 1
 Score =  235 bits (599), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 122/234 (52%), Positives = 155/234 (66%), Gaps = 3/234 (1%)
Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
           T G+VI CKAAV WE  +P  IE+++VAPP+  EVRIKIL T +C TD +   G      
Sbjct: 2   TAGKVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIKGTMVSK- 60
Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
           FP I+GHEA GIVES+GEGVT V+PGD VIP +  +CREC  C++   NLC +    TG 
Sbjct: 61  FPVIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIR-SDITGR 119
Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG 182
           GV+  D  +RF+  GKP++HFM TSTF++YTVV + SVAKID  AP +KVCL+GCG  TG
Sbjct: 120 GVLA-DGTTRFTCKGKPVHHFMNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTG 178
Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRVL 236
            GA   T KV+PGS   VFGLG V             SR+IGID++  KF++ +
Sbjct: 179 YGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAM 232

>pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  235 bits (599), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 125/233 (53%), Positives = 155/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IEDV+VAPP+A EVRIK++   +C TD +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICGTDDHVVSGNLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P ILGHEAAGIVESVGEGVT V+PGD VIP +  +C +C+ CK+ ++N C K      
Sbjct: 61  L-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G +  D   RF+  GKPI+HF+GTSTFSQYTVV + +VAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTL-QDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+  N AKV PGS  AVFGLG V             +R+I +DI+  KF +
Sbjct: 179 GYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAK 231

>pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nad Double Mutant Of Gly 293 Ala And Pro 295 Thr Length = 374

Iteration: 1
 Score =  234 bits (597), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 124/233 (53%), Positives = 155/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+    AKV  GS  AVFGLG V             +R+IG+DI+  KF +
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAK 231

>pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val292ser Mutant Length = 374

Iteration: 1
 Score =  234 bits (597), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 124/233 (53%), Positives = 155/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+    AKV  GS  AVFGLG V             +R+IG+DI+  KF +
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAK 231

>pdb|6ADH|A Chain A, Structure Of Triclinic Ternary Complex Of Horse Liver Alcohol Dehydrogenase At 2.9 Angstroms Resolution Length = 374

Iteration: 1
 Score =  234 bits (597), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 124/233 (53%), Positives = 155/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+    AKV  GS  AVFGLG V             +R+IG+DI+  KF +
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAK 231

>pdb|1N8K|A Chain A, Horse Liver Alcohol Dehydrogenase Val292thr Mutant Complexed To Nad+ And Pyrazole Length = 374

Iteration: 1
 Score =  234 bits (597), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 124/233 (53%), Positives = 155/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+    AKV  GS  AVFGLG V             +R+IG+DI+  KF +
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAK 231

>pdb|3OQ6|A Chain A, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  234 bits (597), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 124/233 (53%), Positives = 155/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+    AKV  GS  AVFGLG V             +R+IG+DI+  KF +
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAK 231

>pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine At Position 141 Length = 373

Iteration: 1
 Score =  233 bits (595), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 121/234 (51%), Positives = 155/234 (66%), Gaps = 3/234 (1%)
Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
           T G+VI CKAAV WE  +P  IE+++VAPP+  EVRIKIL T +C TD +   G      
Sbjct: 2   TAGKVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIKGTMVSK- 60
Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
           FP I+GHEA GIVES+GEGVT V+PGD VIP +  +CREC  C++   NLC +    TG 
Sbjct: 61  FPVIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIR-SDITGR 119
Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG 182
           GV+  D  +RF+  GKP++HF+ TSTF++YTVV + SVAKID  AP +KVCL+GCG  TG
Sbjct: 120 GVLA-DGTTRFTCKGKPVHHFLNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTG 178
Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRVL 236
            GA   T KV+PGS   VFGLG V             SR+IGID++  KF++ +
Sbjct: 179 YGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAM 232

>pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of Horse Liver Alcohol Dehydrogenase In Complex With Nad And Inhibitor Trifluoroethanol Length = 374

Iteration: 1
 Score =  233 bits (594), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 124/233 (53%), Positives = 155/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+    AKV  GS  AVFGLG V             +R+IG+DI+  KF +
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAK 231

>pdb|1AXG|A Chain A, Crystal Structure Of The Val203->ala Mutant Of Liver Alcohol Dehydrogenase Complexed With Cofactor Nad And Inhibitor Trifluoroethanol Solved To 2.5 Angstrom Resolution Length = 374

Iteration: 1
 Score =  233 bits (593), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 123/233 (52%), Positives = 154/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+    AKV  GS  AVFGLG               +R+IG+DI+  KF +
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAK 231

>pdb|1MGO|A Chain A, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant Length = 374

Iteration: 1
 Score =  232 bits (592), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 124/233 (53%), Positives = 154/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP    +C +C+ CK  + N C K   +  
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLATPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+    AKV  GS  AVFGLG V             +R+IG+DI+  KF +
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAK 231

>pdb|1QV6|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  232 bits (591), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 123/233 (52%), Positives = 154/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D    SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDQVVSGTLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+    AKV  GS  AVFGLG V             +R+IG+DI+  +F +
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDRFAK 231

>pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With Nad And Trifluoroethanol Length = 374

Iteration: 1
 Score =  231 bits (590), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 123/233 (52%), Positives = 154/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+    AKV  GS  AVFGLG               +R+IG+DI+  KF +
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAK 231

>pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  230 bits (587), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 122/233 (52%), Positives = 154/233 (66%), Gaps = 3/233 (1%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++   +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEQKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDDHVVSGTLVAP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C  CK  + NLC  ++  + 
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLC--LKNLSM 117
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
               M D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 118 PRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCGFST 177
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+    AKV  GS  AVFGLG V             +R+IG+DI+  KF +
Sbjct: 178 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAK 230

>pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense Length = 374

Iteration: 1
 Score =  229 bits (584), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 121/233 (51%), Positives = 154/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++   +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDEHVVSGNLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P ILGHEAAGIVESVGEGVT V+PGD VIP +  +C +C+ CK+ ++N C K      
Sbjct: 61  L-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRICKNPESNYCLKNDLGNP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G +  D   RF+ +GKPI+HF+G STFSQYTVV + +VAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTL-QDGTRRFTCSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+    AKV PGS  AVFGLG V             +R+I +DI+  KF +
Sbjct: 179 GYGSAVKVAKVTPGSTCAVFGLGGVGLSVVMGCKAAGAARIIAVDINKDKFAK 231

>pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a) Length = 374

Iteration: 1
 Score =  229 bits (583), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 123/233 (52%), Positives = 154/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++   +C TD +  SG     
Sbjct: 1   STAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAVGICGTDDHVVSGTMVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P ILGHEAAGIVESVGEGVT V+PGD VIP    +C +C+ CK+ ++N C K   +  
Sbjct: 61  L-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLAIPQCGKCRICKNPESNYCLKNDVSNP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G +  D  SRF+   KPI+HF+G STFSQYTVV + +VAKID  +PL+KVCL+GCG  T
Sbjct: 120 QGTL-QDGTSRFTCRRKPIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+  N AKV PGS  AVFGLG V             +R+I +DI+  KF +
Sbjct: 179 GYGSAVNVAKVTPGSTCAVFGLGGVGLSAIMGCKAAGAARIIAVDINKDKFAK 231

>pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  229 bits (583), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 121/232 (52%), Positives = 153/232 (65%), Gaps = 3/232 (1%)
Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
           T G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++   +C +D +  SG     L
Sbjct: 2   TAGKVIKCKAAVLWEQKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDDHVVSGTLVAPL 61
Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
            P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C  CK  + NLC  ++  +  
Sbjct: 62  -PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLC--LKNLSMP 118
Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG 182
              M D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  TG
Sbjct: 119 RGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCGFSTG 178
Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
            G+    AKV  GS  AVFGLG V             +R+IG+DI+  KF +
Sbjct: 179 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAK 230

>pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From Acinetobacter Calcoaceticus Length = 371

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 105/214 (49%), Gaps = 9/214 (4%)
Query: 24  IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT 83
           ++ +++  PQ  EV +K++ T +CHTD      K P  L P +LGHE +GI+E++G  VT
Sbjct: 21  LQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVPL-PAVLGHEGSGIIEAIGPNVT 79
Query: 84  EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSI----NGKP 139
           E+Q GDHV+  Y   C +C  C +G    C +  G   +G    D +   ++     G  
Sbjct: 80  ELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGA---DSEGNHALCTHDQGVV 135
Query: 140 IYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVA 199
             HF   S+F+ Y +  + +  K+    P++ +  LGCG+ TG GA  N  KV P S   
Sbjct: 136 NDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFV 195
Query: 200 VFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFD 233
            +G G V             S +I +DI   + +
Sbjct: 196 TWGAGAVGLSALLAAKVCGASIIIAVDIVESRLE 229

>pdb|3TWO|A Chain A, The Crystal Structure Of Cad From Helicobacter Pylori Complexed With Nadp(H) Length = 348

Iteration: 1
 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 86/170 (50%), Gaps = 15/170 (8%)
Query: 36  EVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV-IPC 94
           +V I IL+  +CH+D ++   +  EG++P I GHE AGI++ VG+GV + + GD V + C
Sbjct: 31  DVLIDILYAGICHSDIHSAYSEWKEGIYPMIPGHEIAGIIKEVGKGVKKFKIGDVVGVGC 90
Query: 95  YQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTV 154
           +   C+ CK CK  +   C KV       V   D    F  N +P  H  G   +S   V
Sbjct: 91  FVNSCKACKPCKEHQEQFCTKV-------VFTYDCLDSFHDN-EP--HMGG---YSNNIV 137
Query: 155 VHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLG 204
           V +  V  +D  APL+KV  L C   T    +   +KV  G+ V V G G
Sbjct: 138 VDENYVISVDKNAPLEKVAPLLCAGITTYSPL-KFSKVTKGTKVGVAGFG 186

>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 102/225 (45%), Gaps = 26/225 (11%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGH 69
           KAAV  +  +PL I++V+      GEV ++I    +CHTD +   G  P +   P I GH
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61
Query: 70  EAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
           E  GIVE VG GVT ++ GD V IP   + C  C +C SG+  LC             + 
Sbjct: 62  EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLC------------EHQ 109
Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
           + + +S++G           +++Y       V KI      ++   + C   T   A+  
Sbjct: 110 KNAGYSVDG----------GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKV 159
Query: 189 TAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFD 233
           T   +PG  VA++G+G +             + V+ +DI  +K +
Sbjct: 160 TG-AKPGEWVAIYGIGGLGHVAVQYAKAMGLN-VVAVDIGDEKLE 202

>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 92/196 (46%), Gaps = 25/196 (12%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGH 69
           KAAV  +  +PL I++V+      GEV ++I    +CHTD +   G  P +   P I GH
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61
Query: 70  EAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
           E  GIVE VG GVT ++ GD V IP   + C  C +C SG+  LC             + 
Sbjct: 62  EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLC------------EHQ 109
Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
           + + +S++G           +++Y       V KI      ++   + C   T   A+  
Sbjct: 110 KNAGYSVDG----------GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKV 159
Query: 189 TAKVEPGSIVAVFGLG 204
           T   +PG  VA++G+G
Sbjct: 160 TG-AKPGEWVAIYGIG 174

>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Its Coenzyme And Weak Substrate Length = 342

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 97/227 (42%), Gaps = 26/227 (11%)
Query: 9   TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCIL 67
           T KAAV      PL IE+V+V  P  G+V +KI  + +CHTD +   G  P +   P I 
Sbjct: 6   TMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIP 65
Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE  G V +VG GVT V+ GD V IP     C  C+ C +G   LC             
Sbjct: 66  GHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLC------------E 113
Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
           + + + +S+NG    + +    +    +  +V  A+I P      +   G  V  GL   
Sbjct: 114 SQQNTGYSVNGGYAEYVLADPNYVG-ILPKNVEFAEIAP------ILCAGVTVYKGL--- 163
Query: 187 WNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFD 233
                  PG  VA+ G+G +               V  IDID  K +
Sbjct: 164 -KQTNARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLE 208

>pdb|2H6E|A Chain A, Crystal Structure Of The D-Arabinose Dehydrogenase From Sulfolobus Solfataricus Length = 344

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
Query: 7   VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF--P 64
           ++  KAA+  + ++PL IEDV +  PQ  EV I+I    +C TD   W G + +  F  P
Sbjct: 1   MVKSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLP 60
Query: 65  CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC 113
            ILGHE AG +  VGE + +V+ GD+V+         C++C+ GK N+C
Sbjct: 61  IILGHENAGTIVEVGE-LAKVKKGDNVVVYATWGDLTCRYCREGKFNIC 108

>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella Mel Length = 365

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 98/230 (42%), Gaps = 32/230 (13%)
Query: 9   TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCIL 67
           T KAAV     KPL I++V +  P  G++++ I  + +CHTD +   G  P +   P I 
Sbjct: 25  TMKAAVVRAFGKPLTIDEVPIPQPGPGQIQVAIQASGVCHTDLHAAEGDWPVKPNPPFIP 84
Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE  G V +VG GV  V+ GD V IP     C  C+ C  G   LC +           
Sbjct: 85  GHEGVGFVSAVGSGVKHVKEGDRVGIPWLYTACGHCRHCLGGWETLCEE----------- 133
Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
               + +S+NG           F++Y V     V  +      +++  + C   T    V
Sbjct: 134 -QLNTGYSVNGG----------FAEYVVADPNFVGHLPKNIDFNEIAPVLCAGVT----V 178
Query: 187 WNTAKV---EPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFD 233
           +   KV   +PG  V + G+G +             + V  +DID +K D
Sbjct: 179 YKGLKVTDTKPGDWVVISGIGGLGHMAVQYARAMGLN-VAAVDIDDRKLD 227

>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx Length = 340

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 97/228 (42%), Gaps = 32/228 (14%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGH 69
           KAAV      PL I++V V  P  G+V++KI  + +CHTD +   G  P +   P I GH
Sbjct: 4   KAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGH 63
Query: 70  EAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
           E  G V +VG GV+ V+ GD V +P   + C  C+ C  G   LC K             
Sbjct: 64  EGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEK------------Q 111
Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
           + + +S+NG           + +Y V     V  +  +    ++  + C   T    V+ 
Sbjct: 112 QNTGYSVNGG----------YGEYVVADPNYVGLLPDKVGFVEIAPILCAGVT----VYK 157
Query: 189 TAKV---EPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFD 233
             KV    PG  V + G+G +              RV  +DID  K +
Sbjct: 158 GLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLN 204

>pdb|4ILK|A Chain A, Crystal Structure Of Short Chain Alcohol Dehydrogenase (rspb) From E. Coli Cft073 (efi Target Efi-506413) Complexed With Cofactor Nadh Length = 359

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           K+ +  +PN+  +IE  ++  P AGEVR+K+    +C +D++ + G +P   +P ++GHE
Sbjct: 22  KSILIEKPNQLSIIER-EIPTPSAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHE 80
Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC 113
             G++++VGEGV   + G+ V       C  C  C  GK N+C
Sbjct: 81  FFGVIDAVGEGVESARVGERVAVDPVVSCGHCYPCSIGKPNVC 123

>pdb|2HCY|A Chain A, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae Fermentative Enzyme Length = 347

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 90/220 (40%), Gaps = 25/220 (11%)
Query: 9   TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL-FPCIL 67
           T K  + +E +  L  +D+ V  P+A E+ I + ++ +CHTD + W G  P  +  P + 
Sbjct: 5   TQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVG 64
Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE AG+V  +GE V   + GD+  I      C  C++C+ G  + C             
Sbjct: 65  GHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNC------------- 111
Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
                   ++G     +    +F QY     V  A I     L +V  + C   T   A+
Sbjct: 112 ----PHADLSG-----YTHDGSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKAL 162
Query: 187 WNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGID 226
             +A +  G  VA+ G                  RV+GID
Sbjct: 163 -KSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGID 201

>pdb|1UUF|A Chain A, Crystal Structure Of A Zinc-Type Alcohol Dehydrogenase-Like Protein Yahk Length = 369

Iteration: 1
 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 24/177 (13%)
Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYT----WSGKDPEGLF 63
           +  KA  A+   +PL   D+    P   +V+I+I +  +CH+D +     W+G     ++
Sbjct: 21  LKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGT----VY 76
Query: 64  PCILGHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
           PC+ GHE  G V +VG+ V +  PGD V + C    C+ C+ C+ G  N C  + G   +
Sbjct: 77  PCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNS 136
Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI-DPQAPLDKVCLLGCG 178
                          +P +   G   +SQ  VVH+  V +I  PQ  L  V  L C 
Sbjct: 137 -----------PTPDEPGHTLGG---YSQQIVVHERYVLRIRHPQEQLAAVAPLLCA 179

>pdb|1H2B|A Chain A, Crystal Structure Of The Alcohol Dehydrogenase From The Hyperthermophilic Archaeon Aeropyrum Pernix At 1.65a Resolution Length = 359

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 97/229 (42%), Gaps = 26/229 (11%)
Query: 10  CKAAVAWEPNKPLVIEDVQVAPPQAG--EVRIKILFTALCHTDAYTWSGKDPEGL---FP 64
            KAA   E NKPL IEDV   P   G  +V ++I    +CHTD +   G   E L    P
Sbjct: 16  LKAARLHEYNKPLRIEDVDY-PRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLP 74
Query: 65  CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
             LGHE  G +E V EGV  ++ GD VI         C  C++G+   C           
Sbjct: 75  YTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHC----------- 123
Query: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 184
             N      +I+G     FM TS  S   +  D+S  K+   APL    +      T   
Sbjct: 124 -ENLEFPGLNIDGG-FAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGI------TAYR 175
Query: 185 AVWNTAK-VEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKF 232
           AV   A+ + PG+ VA+ G+G +             + VI +D+  +K 
Sbjct: 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKL 224

>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase Length = 343

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 87/214 (40%), Gaps = 23/214 (10%)
Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG-KDPEGLFPCILGHEAAGIVESVGE 80
           L + D+ V  P   EVR+++   AL H D +   G   P+   P +LG + +G+V++VG 
Sbjct: 15  LEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVGP 74
Query: 81  GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPI 140
           GV    PGD V+      C  C+ C +G+ NLC                  R+ I G+  
Sbjct: 75  GVEGFAPGDEVVINPGLSCGRCERCLAGEDNLC-----------------PRYQILGE-- 115
Query: 141 YHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAV 200
            H  G  T+++Y V+ + ++A        ++   +     T    V +   V PG  V V
Sbjct: 116 -HRHG--TYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLV 172
Query: 201 FGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
              G+              +RVI       K  R
Sbjct: 173 MAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRR 206

>pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenase) From Silverleaf Whitefly Length = 352

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 4/105 (3%)
Query: 12  AAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDPEGLF--PCILG 68
           +AV ++ N  L +E   +  P+  EV +++ +  +C +D + +  G+  + +   P ++G
Sbjct: 7   SAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIG 65
Query: 69  HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC 113
           HEA+G V  VG+ V  ++ GD V       CR C+FCK GK NLC
Sbjct: 66  HEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLC 110

>pdb|4EEX|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Length = 348

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 27/213 (12%)
Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81
           LV ++++   P   E  + + +  +CHTD +  +G D       +LGHE  GIV+ +G  
Sbjct: 16  LVEKELRAIKPN--EALLDMEYCGVCHTDLHVAAG-DYGNKAGTVLGHEGIGIVKEIGAD 72
Query: 82  VTEVQPGDHVIPCYQAE-CRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPI 140
           V+ +Q GD V   +  E C  C++C SG    C +V+ A             +S++G   
Sbjct: 73  VSSLQVGDRVSVAWFFEGCGHCEYCVSGNETFCREVKNAG------------YSVDG--- 117
Query: 141 YHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAV 200
                     +  VV D +V   D   P++   +   GV T        + V+PG    +
Sbjct: 118 ------GMAEEAIVVADYAVKVPDGLDPIEASSITCAGVTT--YKAIKVSGVKPGDWQVI 169
Query: 201 FGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFD 233
           FG G +             ++VI +DI+  K +
Sbjct: 170 FGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLN 202

>pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Variant Re1 Length = 348

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 27/213 (12%)
Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81
           LV ++++   P   E  + + +  +CHTD +  +G D       +LGHE  GIV+ +G  
Sbjct: 16  LVEKELRAIKPN--EALLDMEYCGVCHTDLHVAAG-DFGNKAGTVLGHEGIGIVKEIGAD 72
Query: 82  VTEVQPGDHVIPCYQAE-CRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPI 140
           V+ +Q GD V   +  E C  C++C SG    C +V+ A             +S++G   
Sbjct: 73  VSSLQVGDRVSVAWFFEGCGHCEYCVSGNETFCREVKNAG------------YSVDG--- 117
Query: 141 YHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAV 200
                     +  VV D +V   D   P++   +   GV T        + V+PG    +
Sbjct: 118 ------GMAEEAIVVADYAVKVPDGLDPIEASSITCAGVTT--YKAIKVSGVKPGDWQVI 169
Query: 201 FGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFD 233
           FG G +             ++VI +DI+  K +
Sbjct: 170 FGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLN 202

>pdb|2XAA|A Chain A, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm 44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol Length = 345

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 88/227 (38%), Gaps = 41/227 (18%)
Query: 19  NKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF--PCILGHEAAGIVE 76
           ++P+V+ D+    P  GE+ +K+    LCH+D +       +  +  P  LGHE  G V 
Sbjct: 11  SEPVVV-DIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVA 69
Query: 77  SVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSIN 136
            +GEGVT    GD V       C  C  C  G+ N C               R +   I 
Sbjct: 70  ELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYC--------------TRAADLGIT 115
Query: 137 ----GKPIYHFMGTSTFSQYTVV----HDVSVAKIDP--QAPLDKVCLLGCGVPTGLGAV 186
               G P        + ++Y +V    H V +  +DP   APL    L      T   A+
Sbjct: 116 PPGLGSP-------GSMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGL------TPYHAI 162
Query: 187 WNTAK-VEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKF 232
                 + PGS   V G+G +             +RVI +D+D  + 
Sbjct: 163 SRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRL 209

>pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus Tokodaii Strain7 Length = 347

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 87/206 (42%), Gaps = 33/206 (16%)
Query: 17  EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--------DPEGLFPCILG 68
           E  KPL +ED+ +  P+  +V IKI    +CH+D +   G+        D     P  LG
Sbjct: 8   EIGKPLKLEDIPIPKPKGSQVLIKIEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLG 67
Query: 69  HEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVR-------GAT 120
           HE AG +E VG+ V     GD V +  ++ E   C +C+ G+ +LC   R       GA 
Sbjct: 68  HEIAGRIEEVGDEVVGYSKGDLVAVNPWEGEG-NCYYCRIGEEHLCDSPRWLGINYDGAY 126
Query: 121 GAGVMMNDRKSRF------SINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL 174
              V++   K  +      ++   P+       T S  T    V  A +DP   L    +
Sbjct: 127 AEYVLVPHYKYLYKLRRLSAVEAAPL-------TCSGVTTYRAVRKASLDPSKTL---VV 176
Query: 175 LGCGVPTGLGAVWNTAKVEPGSIVAV 200
           +G G   G  A+     V   +I+ V
Sbjct: 177 IGAGGGLGTMAIQIAKAVSGATIIGV 202

>pdb|2DQ4|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase Length = 343

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-PEGLF--PCIL 67
           +A     P + L + D  V  P  GE+ +++   ++C TD + W       G    P + 
Sbjct: 2   RALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVT 61
Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC 113
           GHE +G+VE+VG GV   Q GDHV       C  C  C++G  ++C
Sbjct: 62  GHEFSGVVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVC 107

>pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From Thermotoga Maritima At 2.00 A Resolution Length = 380

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           +   A V  + N+PLV ++ +++    G + ++IL   +C +D + + G+DP    P IL
Sbjct: 16  LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIIL 75
Query: 68  GHEAAG-IVESVGEGV----TEVQPGDHVIPCYQAECRECKFCKSGK 109
           GHE AG +VE  GE        ++PGD ++      C EC +CK  K
Sbjct: 76  GHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSK 122

>pdb|3GFB|A Chain A, L-Threonine Dehydrogenase (Tktdh) From The Hyperthermophilic Archaeon Thermococcus Kodakaraensis Length = 350

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 26  DVQVAPPQAGEVRIKILFTALCHTDA--YTWSGKDPEGLFP-CILGHEAAGIVESVGEGV 82
           +V V  P  GEV IK+L T++C TD   Y W+      + P  I+GHE AG V  VG GV
Sbjct: 21  EVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEVGPGV 80
Query: 83  TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR 117
            ++Q GD++       C +C  CK  + ++C   +
Sbjct: 81  EDLQVGDYISVETHIVCGKCYACKHNRYHVCQNTK 115

>pdb|1R37|A Chain A, Alcohol Dehydrogenase From Sulfolobus Solfataricus Complexed With Nad(H) And 2-Ethoxyethanol Length = 347

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 17  EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--------DPEGLFPCILG 68
           E  KPL ++++ V  P+  +V IK+    +CH+D +   G+        D     P  LG
Sbjct: 8   EIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLG 67
Query: 69  HEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVR 117
           HE AG +E VG+ V     GD V +  +Q E   C +C+ G+ +LC   R
Sbjct: 68  HEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEG-NCYYCRIGEEHLCDSPR 116

>pdb|1NTO|A Chain A, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon Sulfolobus Solfataricus-Monoclinic Crystal Form Length = 347

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 17  EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--------DPEGLFPCILG 68
           E  KPL ++++ V  P+  +V IK+    +CH+D +   G+        D     P  LG
Sbjct: 8   EIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLG 67
Query: 69  HEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVR 117
           HE AG +E VG+ V     GD V +  +Q E   C +C+ G+ +LC   R
Sbjct: 68  HEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEG-NCYYCRIGEEHLCDSPR 116

>pdb|1JVB|A Chain A, Alcohol Dehydrogenase From The Archaeon Sulfolobus Solfataricus Length = 347

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 17  EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--------DPEGLFPCILG 68
           E  KPL ++++ V  P+  +V IK+    +CH+D +   G+        D     P  LG
Sbjct: 8   EIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHXRQGRFGNLRIVEDLGVKLPVTLG 67
Query: 69  HEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVR 117
           HE AG +E VG+ V     GD V +  +Q E   C +C+ G+ +LC   R
Sbjct: 68  HEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEG-NCYYCRIGEEHLCDSPR 116

>pdb|3I4C|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh) Double Mutant (W95l,N249y) Length = 347

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--------DPEGL 62
           +A    E  KPL ++++ V  P+  +V IK+    +CH+D +   G+        D    
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61
Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVR 117
            P  LGHE AG +E VG+ V     GD V +   Q E   C +C+ G+ +LC   R
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPLQGEG-NCYYCRIGEEHLCDSPR 116

>pdb|4A2C|A Chain A, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase From Escherichia Coli Length = 346

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Query: 36  EVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV---- 91
           EVR+KI  + LC +D      K+    +P  LGHE +G +++VG GV ++ PGD V    
Sbjct: 27  EVRVKIASSGLCGSD-LPRIFKNGAHYYPITLGHEFSGYIDAVGSGVDDLHPGDAVACVP 85
Query: 92  -IPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSI 135
            +PC+   EC +  + +  K +  G  R    A  ++  RK+ F++
Sbjct: 86  LLPCFTCPECLKGFYSQCAKYDFIGSRRDGGFAEYIVVKRKNVFAL 131

>pdb|2DFV|A Chain A, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus Horikoshii Length = 347

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 26  DVQVAPPQAGEVRIKILFTALCHTDA--YTWSGKDPEGLFP-CILGHEAAGIVESVGEGV 82
           +V V  P  GEV IK+L T++C TD   Y W+      + P  I GHE AG V  +G GV
Sbjct: 20  EVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIXGHEVAGEVVEIGPGV 79
Query: 83  TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR 117
             ++ GD+V       C +C  C+ G+ ++C   +
Sbjct: 80  EGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTK 114

>pdb|2D8A|A Chain A, Crystal Structure Of Ph0655 From Pyrococcus Horikoshii Ot3 Length = 348

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 26  DVQVAPPQAGEVRIKILFTALCHTDA--YTWSGKDPEGLFP-CILGHEAAGIVESVGEGV 82
           +V V  P  GEV IK+L T++C TD   Y W+      + P  I GHE AG V  +G GV
Sbjct: 21  EVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIXGHEVAGEVVEIGPGV 80
Query: 83  TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR 117
             ++ GD+V       C +C  C+ G+ ++C   +
Sbjct: 81  EGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTK 115

>pdb|1PL7|A Chain A, Human Sorbitol Dehydrogenase (Apo) Length = 356

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF---PCILGHEAAGIVESV 78
           L +E+  +  P   EV +++    +C +D + W            P +LGHEA+G VE V
Sbjct: 19  LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKV 78
Query: 79  GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNL 112
           G  V  ++PGD V     A     +FCK G+ NL
Sbjct: 79  GSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNL 112

>pdb|4EJ6|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase (Target Psi-012003) From Sinorhizobium Meliloti 1021 Length = 370

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 13  AVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAA 72
           AV  E    + + +V +  P   ++ +K+    +C TD +   G+ P    P  LGHE  
Sbjct: 26  AVRLESVGNISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFPS-TPPVTLGHEFC 84
Query: 73  GIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR 117
           GIV   G  V ++ PG  +       C  C  C++G+ NLC  +R
Sbjct: 85  GIVVEAGSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLR 129

>pdb|1YQD|A Chain A, Sinapyl Alcohol Dehydrogenase Complexed With Nadp+ Length = 366

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 22/146 (15%)
Query: 36  EVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV-IPC 94
           +VR K+L+  +CH+D ++        ++P + GHE  G V  VG  V +V  GD V + C
Sbjct: 43  DVRFKVLYCGVCHSDLHSIKNDWGFSMYPLVPGHEIVGEVTEVGSKVKKVNVGDKVGVGC 102
Query: 95  YQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTST---FSQ 151
               C  C+ C +   N C K+                  +    IYH  GT T   +S 
Sbjct: 103 LVGACHSCESCANDLENYCPKM-----------------ILTYASIYH-DGTITYGGYSN 144
Query: 152 YTVVHDVSVAKIDPQAPLDKVCLLGC 177
           + V ++  + +     PLD    L C
Sbjct: 145 HMVANERYIIRFPDNMPLDGGAPLLC 170

>pdb|1PL6|A Chain A, Human SdhNADHINHIBITOR COMPLEX Length = 356

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF---PCILGHEAAGIVESV 78
           L +E+  +  P   EV ++     +C +D + W            P +LGHEA+G VE V
Sbjct: 19  LRLENYPIPEPGPNEVLLRXHSVGICGSDVHYWEYGRIGNFIVKKPXVLGHEASGTVEKV 78
Query: 79  GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNL 112
           G  V  ++PGD V     A     +FCK G+ NL
Sbjct: 79  GSSVKHLKPGDRVAIEPGAPRENDEFCKXGRYNL 112

>pdb|3QE3|A Chain A, Sheep Liver Sorbitol Dehydrogenase Length = 355

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDPEGLF--PCILGHEAAGIVESV 78
           L +E+  +  P   EV +K+    +C +D + W  G+  + +   P +LGHEA+G V  V
Sbjct: 18  LRLENYPIPEPGPNEVLLKMHSVGICGSDVHYWQHGRIGDFVVKKPMVLGHEASGTVVKV 77
Query: 79  GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNL 112
           G  V  +QPGD V     A  +  +FCK G+ NL
Sbjct: 78  GSLVRHLQPGDRVAIQPGAPRQTDEFCKIGRYNL 111

>pdb|2CD9|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 - Apo Form Length = 366

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 9/109 (8%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQA-GEVRIKILFTALCHTDAYTWSGKD-----PEGLFP 64
           KA +   PN  + ++DV      + G+++I+ ++  +C TD    +GK      P+G   
Sbjct: 2   KAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGTDREIVNGKLTLSTLPKGKDF 61
Query: 65  CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC 113
            +LGHEA G+VE    G ++   GD V+P  +  C  C+ C  G+ + C
Sbjct: 62  LVLGHEAIGVVEESYHGFSQ---GDLVMPVNRRGCGICRNCLVGRPDFC 107

>pdb|2CDB|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex With Nadp And Glucose Length = 366

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 9/109 (8%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQA-GEVRIKILFTALCHTDAYTWSGKD-----PEGLFP 64
           KA +   PN  + ++DV      + G+++I+ ++  +C  D    +GK      P+G   
Sbjct: 2   KAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDF 61
Query: 65  CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC 113
            +LGHEA G+VE    G ++   GD V+P  +  C  C+ C  G+ + C
Sbjct: 62  LVLGHEAIGVVEESYHGFSQ---GDLVMPVNRRGCGICRNCLVGRPDFC 107

>pdb|1KOL|A Chain A, Crystal Structure Of Formaldehyde Dehydrogenase Length = 398

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 86/205 (41%), Gaps = 26/205 (12%)
Query: 37  VRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQ 96
           V +K++ T +C +D +   G+    +   +LGHE  G V   G  V  +Q GD V   + 
Sbjct: 36  VILKVVSTNICGSDQHMVRGRTTAQV-GLVLGHEITGEVIEKGRDVENLQIGDLVSVPFN 94
Query: 97  AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQ--YTV 154
             C  C+ CK   T +C  V  A   G                 Y  MG  T  Q  Y +
Sbjct: 95  VACGRCRSCKEMHTGVCLTVNPARAGGAYG--------------YVDMGDWTGGQAEYVL 140
Query: 155 V--HDVSVAKI-DPQAPLDKVCLLGCG---VPTGL-GAVWNTAKVEPGSIVAVFGLGTVX 207
           V   D ++ K+ D    ++K+  L C    +PTG  GAV  TA V PGS V V G G V 
Sbjct: 141 VPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGAV--TAGVGPGSTVYVAGAGPVG 198
Query: 208 XXXXXXXXXXXXSRVIGIDIDPKKF 232
                       + VI  D++P + 
Sbjct: 199 LAAAASARLLGAAVVIVGDLNPARL 223

>pdb|1QOR|A Chain A, Crystal Structure Of Escherichia Coli Quinone Oxidoreductase Complexed With Nadph Length = 327

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 21 PLVIEDVQVAP--PQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESV 78
          P V++ V+  P  P   E++++     +   D Y  SG  P    P  LG EAAGIV  V
Sbjct: 13 PEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKV 72
Query: 79 GEGVTEVQPGDHVIPCYQA 97
          G GV  ++ GD V+    A
Sbjct: 73 GSGVKHIKAGDRVVYAQSA 91

>pdb|1JQB|A Chain A, Alcohol Dehydrogenase From Clostridium Beijerinckii: Crystal Structure Of Mutant With Enhanced Thermal Stability Length = 351

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 67/167 (40%), Gaps = 24/167 (14%)
Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVI-PCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
           ILGHEA G V  VG  V + +PGD VI PC   + R  +     + +  G + G      
Sbjct: 56  ILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGW----- 110
Query: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPTG 182
               + S F               F +Y  V+  D+++A +    PL+   ++   + TG
Sbjct: 111 ----KFSNFK-----------DGVFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTG 155
Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDP 229
                  A +E GS V V G+G V              R+IG+   P
Sbjct: 156 FHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP 201

>pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato Dc3000 Quinone Oxidoreductase Length = 325

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 21 PLVIEDVQVAP----PQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVE 76
          P V+E V   P    PQA  VR K +   L   D Y  SG  P    P  LG E AG+VE
Sbjct: 13 PEVLEYVDFEPEAPGPQAVVVRNKAI--GLNFIDTYYRSGLYPAPFLPSGLGAEGAGVVE 70
Query: 77 SVGEGVTEVQPGDHV 91
          +VG+ VT  + GD V
Sbjct: 71 AVGDEVTRFKVGDRV 85

>pdb|3FPL|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of C. Beijerinckii Adh By T. Brockii Adh Length = 351

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 67/167 (40%), Gaps = 24/167 (14%)
Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVI-PCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
           ILGHEA G V  VG  V + +PGD VI PC   + R  +     + +  G + G      
Sbjct: 56  ILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGW----- 110
Query: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPTG 182
               + S F               F +Y  V+  D+++A +    PL+   ++   + TG
Sbjct: 111 ----KFSNFK-----------DGVFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTG 155
Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDP 229
                  A +E G+ VAV G+G V              R+I +   P
Sbjct: 156 FHGA-ELADIELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAVGSRP 201

>pdb|3M6I|A Chain A, L-Arabinitol 4-Dehydrogenase Length = 363

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 33  QAGEVRIKILFTALCHTDAYTWS-GKDPEGLFPC--ILGHEAAGIVESVGEGVTEVQPGD 89
           + GEV + +  T +C +D + W  G     +  C  +LGHE+AG V +V   V  ++ GD
Sbjct: 39  KEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAGEVIAVHPSVKSIKVGD 98
Query: 90  HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIY-HFMGTST 148
            V    Q  C  C+ C +G+ N C +V   +   V    R+    +N   ++ H +G  +
Sbjct: 99  RVAIEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRR---YVNHPAVWCHKIGNMS 155
Query: 149 FSQYTVVHDVSVA 161
           +    ++  +SVA
Sbjct: 156 YENGAMLEPLSVA 168

>pdb|1PED|A Chain A, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form) Length = 351

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 67/167 (40%), Gaps = 24/167 (14%)
Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVI-PCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
           ILGHEA G V  VG  V + +PGD VI PC   + R  +     + +  G + G      
Sbjct: 56  ILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGW----- 110
Query: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPTG 182
               + S F               F +Y  V+  D+++A +    PL+   ++   + TG
Sbjct: 111 ----KFSNFK-----------DGVFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTG 155
Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDP 229
                  A ++ GS V V G+G V              R+IG+   P
Sbjct: 156 FHGA-ELADIQMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP 201

>pdb|2B83|A Chain A, A Single Amino Acid Substitution In The Clostridium Beijerinckii Alcohol Dehydrogenase Is Critical For Thermostabilization Length = 351

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 66/167 (39%), Gaps = 24/167 (14%)
Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVI-PCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
           ILGHEA G V  VG  V + +PGD VI PC   + R  +       +  G + G      
Sbjct: 56  ILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFPQHSNGMLAGW----- 110
Query: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPTG 182
               + S F               F +Y  V+  D+++A +    PL+   ++   + TG
Sbjct: 111 ----KFSNFK-----------DGVFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTG 155
Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDP 229
                  A ++ GS V V G+G V              R+IG+   P
Sbjct: 156 FHGA-ELADIQMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP 201

>pdb|2B5W|A Chain A, Crystal Structure Of D38c Glucose Dehydrogenase Mutant From Haloferax Mediterranei Length = 357

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 13 AVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---PEGLFPCILGH 69
          AV    ++P+VIE  +   P++GE  ++ L   +C TD    +G     PEG    +LGH
Sbjct: 5  AVKRGEDRPVVIEKPR-PEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVLGH 63
Query: 70 EAAGIVESVGEGVTEVQPGDHVIPC 94
          EA G+V  V    TE++ GD V+P 
Sbjct: 64 EAVGVV--VDPNDTELEEGDIVVPT 86

>pdb|3FTN|A Chain A, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE BY EXCHANGE Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 76/193 (39%), Gaps = 22/193 (11%)
Query: 39  IKILFTALCHTDAYT-WSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDH-VIPCYQ 96
           ++ L  A C +D +T + G   E     ILGHEA G V  VG  V + +PGD  V+P   
Sbjct: 29  VRPLAVAPCTSDIHTVFEGAIGE-RHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAIT 87
Query: 97  AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH 156
            + R  +  +    +  G + G   + V        F +N                    
Sbjct: 88  PDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDA------------------ 129
Query: 157 DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXX 216
           D+++A +  + PL+   ++   + TG       A +E GS V V G+G V          
Sbjct: 130 DMNLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKL 188
Query: 217 XXXSRVIGIDIDP 229
               R+IG+   P
Sbjct: 189 RGAGRIIGVGSRP 201

>pdb|1WLY|A Chain A, Crystal Structure Of 2-haloacrylate Reductase Length = 333

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 12 AAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF----PC 65
          AAV  +   P   V E+V+V  P  G+VR++     +   D Y  +G  P  L     P 
Sbjct: 4  AAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGI-PHPLVVGEPPI 62
Query: 66 ILGHEAAGIVESVGEGVTEVQPGDHVIPC 94
          ++G EAA +VE VG GVT+   G+ V  C
Sbjct: 63 VVGFEAAAVVEEVGPGVTDFTVGERVCTC 91

>pdb|1YKF|A Chain A, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium Brockii Length = 352

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 76/193 (39%), Gaps = 22/193 (11%)
Query: 39  IKILFTALCHTDAYT-WSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDH-VIPCYQ 96
           ++ L  A C +D +T + G   E     ILGHEA G V  VG  V + +PGD  V+P   
Sbjct: 29  VRPLAVAPCTSDIHTVFEGAIGE-RHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAIT 87
Query: 97  AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH 156
            + R  +  +    +  G + G   + V        F +N                    
Sbjct: 88  PDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDA------------------ 129
Query: 157 DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXX 216
           D+++A +  + PL+   ++   + TG       A +E G+ VAV G+G V          
Sbjct: 130 DMNLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELADIELGATVAVLGIGPVGLMAVAGAKL 188
Query: 217 XXXSRVIGIDIDP 229
               R+I +   P
Sbjct: 189 RGAGRIIAVGSRP 201

>pdb|2NVB|A Chain A, Contribution Of Pro275 To The Thermostability Of The Alcohol Dehydrogenases (Adhs) Length = 352

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 76/193 (39%), Gaps = 22/193 (11%)
Query: 39  IKILFTALCHTDAYT-WSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDH-VIPCYQ 96
           ++ L  A C +D +T + G   E     ILGHEA G V  VG  V + +PGD  V+P   
Sbjct: 29  VRPLAVAPCTSDIHTVFEGAIGE-RHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAIT 87
Query: 97  AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH 156
            + R  +  +    +  G + G   + V        F +N                    
Sbjct: 88  PDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDA------------------ 129
Query: 157 DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXX 216
           D+++A +  + PL+   ++   + TG       A +E G+ VAV G+G V          
Sbjct: 130 DMNLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELADIELGATVAVLGIGPVGLMAVAGAKL 188
Query: 217 XXXSRVIGIDIDP 229
               R+I +   P
Sbjct: 189 RGAGRIIAVGSRP 201

>pdb|3FSR|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 76/193 (39%), Gaps = 22/193 (11%)
Query: 39  IKILFTALCHTDAYT-WSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDH-VIPCYQ 96
           ++ L  A C +D +T + G   E     ILGHEA G V  VG  V + +PGD  V+P   
Sbjct: 29  VRPLAVAPCTSDIHTVFEGAIGE-RHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAIT 87
Query: 97  AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH 156
            + R  +  +    +  G + G   + V        F +N                    
Sbjct: 88  PDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDA------------------ 129
Query: 157 DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXX 216
           D+++A +  + PL+   ++   + TG       A ++ GS V V G+G V          
Sbjct: 130 DMNLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELADIQMGSSVVVIGIGAVGLMGIAGAKL 188
Query: 217 XXXSRVIGIDIDP 229
               R+IG+   P
Sbjct: 189 RGAGRIIGVGSRP 201

>pdb|2DPH|A Chain A, Crystal Structure Of Formaldehyde Dismutase Length = 398

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 37  VRIKILFTALCHTDAYTWSGKD--PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPC 94
           V +K++ T +C +D + + G+   P+G    +LGHE  G V   G  V  +  GD V   
Sbjct: 35  VILKVVSTNICGSDQHIYRGRFIVPKG---HVLGHEITGEVVEKGSDVELMDIGDLVSVP 91
Query: 95  YQAECRECKFCKSGKTNLC 113
           +   C  C+ CK  ++++C
Sbjct: 92  FNVACGRCRNCKEARSDVC 110

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	243
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	1e-160
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	1e-158
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	1e-157
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	1e-157
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	1e-157
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	1e-136
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	1e-117
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	1e-60
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	5e-52
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	8e-46
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	9e-46
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	1e-45
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	1e-45
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	3e-44
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	4e-44
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	4e-43
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	4e-43
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	5e-43
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	8e-40
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	7e-39
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	2e-38
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	5e-38
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	2e-37
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	2e-37
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	1e-35
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	3e-29
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	7e-29
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	8e-29
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	1e-27
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	6e-27
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	2e-26
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	7e-24
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	1e-23
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	5e-22
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	7e-22
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	6e-21
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	1e-20
3gms_A	340	Putative NADPH:quinone reductase; structural genom	9e-18
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	1e-16
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	2e-16
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	5e-15
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	9e-15
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	1e-14
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	2e-14
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	3e-14
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	1e-13
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	2e-13
4eye_A	342	Probable oxidoreductase; structural genomics, niai	6e-13
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	8e-13
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	1e-12
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	3e-12
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	3e-11
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	7e-11
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	2e-10
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	2e-10
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	2e-09
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	3e-09
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	1e-08
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	3e-08
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	6e-06
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	4e-04
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	8e-04

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score =  447 bits (1151), Expect = e-160
 Identities = 157/230 (68%), Positives = 181/230 (78%), Gaps = 1/230 (0%)

Query: 5   GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFP 64
            +VI CKAAVAWE  KPL IE+++VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP
Sbjct: 2   NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFP 61

Query: 65  CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
            ILGH  AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G+
Sbjct: 62  VILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGL 121

Query: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 184
           M  D  SRF+  GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG G
Sbjct: 122 MP-DGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYG 180

Query: 185 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           A  NTAK+EPGS+ AVFGLG VGLAV  G K AGASR+IG+DI+  KF R
Sbjct: 181 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFAR 230

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score =  443 bits (1143), Expect = e-158
 Identities = 132/234 (56%), Positives = 162/234 (69%), Gaps = 3/234 (1%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M T G+ ITCKAAVAWEP+KPL +E + VAPP+A EVRIKIL + +C +D+       P 
Sbjct: 1   MCTAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPS 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
             FP ILGHEA G+VES+G GVT V+PGD VIP +  +C  C+ CKS  +N C K     
Sbjct: 61  K-FPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGA 119

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
             G+M  D  SRF+  GKPIY+ MGTSTF++YTVV D++VAKIDP+APL+  CL+GCG  
Sbjct: 120 KTGLMA-DMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLES-CLIGCGFA 177

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           TG GA  NTAKV PGS  AVFGLG VG +   G KAAGASR+IG+     KF +
Sbjct: 178 TGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPK 231

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score =  441 bits (1136), Expect = e-157
 Identities = 128/235 (54%), Positives = 166/235 (70%), Gaps = 4/235 (1%)

Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
           T+G+VI CKAA+AW+   PL IE+++V+PP+A EVRI+++ T +C TD      K    L
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKK-AL 60

Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR---GA 119
           FP +LGHE AGIVESVG GVT  +PGD VIP +  +C+ CK C S  TNLCGK+R     
Sbjct: 61  FPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYP 120

Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 179
           T    +M DR SRF+  G+ IYHFMG S+FSQYTVV + ++A++D +A L++VCL+GCG 
Sbjct: 121 TIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGF 180

Query: 180 PTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
            +G GA  NTAKV PGS  AVFGLG VGL+   G K AGASR+I IDI+ +KF +
Sbjct: 181 SSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPK 235

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score =  440 bits (1134), Expect = e-157
 Identities = 132/233 (56%), Positives = 164/233 (70%), Gaps = 2/233 (0%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
             P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  -LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTMQ-DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           G G+    AKV  GS  AVFGLG VGL+V  G KAAGA+R+IG+DI+  KF +
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAK 231

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score =  439 bits (1132), Expect = e-157
 Identities = 135/233 (57%), Positives = 170/233 (72%), Gaps = 1/233 (0%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           +T G+VI CKAAVAWE NKPLVIE+++V  P A E+RIKI+ T +CHTD Y       + 
Sbjct: 1   ATVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKD 60

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
            FP +LGHE AGIVESVG GVTE QPG+ VIP + ++C EC+FC+S KTN C K      
Sbjct: 61  GFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANES 120

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
              +M+ +++RF+  G+ +  F+GTSTFSQYTVV+ ++VAKIDP APLD VCLLGCGV T
Sbjct: 121 PD-VMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVST 179

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           G GA  NTAKVEPGS  AVFGLG VGLA   G  +AGA R+I +D++P KF++
Sbjct: 180 GFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEK 232

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score =  388 bits (998), Expect = e-136
 Identities = 73/230 (31%), Positives = 115/230 (50%), Gaps = 5/230 (2%)

Query: 6   QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
           ++    AAV         ++ +++  PQ  EV +K++ T +CHTD      K P    P 
Sbjct: 3   ELKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVP-LPA 61

Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
           +LGHE +GI+E++G  VTE+Q GDHV+  Y   C +C  C +G    C +  G   +G  
Sbjct: 62  VLGHEGSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGAD 120

Query: 126 MNDRKSRFSINGKPIY--HFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGL 183
             +       + + +   HF   S+F+ Y +  + +  K+    P++ +  LGCG+ TG 
Sbjct: 121 S-EGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGA 179

Query: 184 GAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           GA  N  KV P S    +G G VGL+    AK  GAS +I +DI   + +
Sbjct: 180 GACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLE 229

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score =  338 bits (868), Expect = e-117
 Identities = 60/232 (25%), Positives = 97/232 (41%), Gaps = 19/232 (8%)

Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           +   A V  + N+PLV ++ +++    G + ++IL   +C +D + + G+DP    P IL
Sbjct: 16  LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIIL 75

Query: 68  GHEAAGIVESVGEGVT-----EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
           GHE AG V  V           ++PGD ++      C EC +CK  K       R     
Sbjct: 76  GHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNR----K 131

Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH-DVSVAKIDPQAPLDKVCLLGCGVPT 181
              +N   S +        H  G   +S + V+  +  V K+  +  LD + +  C   T
Sbjct: 132 VYGINRGCSEYP-------HLRG--CYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGAT 182

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
              A     +   G  V + G G +GL     A++ GA  VI I   P +  
Sbjct: 183 AYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLK 234

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score =  193 bits (492), Expect = 1e-60
 Identities = 53/226 (23%), Positives = 78/226 (34%), Gaps = 20/226 (8%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE--GLFPCILG 68
           KA    E     V+ D+    P  GE+ +K+    LCH+D +       +     P  LG
Sbjct: 2   KAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLG 61

Query: 69  HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
           HE  G V  +GEGVT    GD V       C  C  C  G+ N C +             
Sbjct: 62  HEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITP----- 116

Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKV-CLLGCGVPTGLGAVW 187
                   G          + ++Y +V                   L   G+        
Sbjct: 117 --PGLGSPG----------SMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISR 164

Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
               + PGS   V G+G +G    +  +A  A+RVI +D+D  +  
Sbjct: 165 VLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLA 210

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score =  171 bits (435), Expect = 5e-52
 Identities = 65/241 (26%), Positives = 95/241 (39%), Gaps = 30/241 (12%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQV-APPQAGEVRIKILFTALCHTDAYTWSGKDP 59
            S    V   KAA   E NKPL IEDV         +V ++I    +CHTD +   G   
Sbjct: 7   FSQSLGVERLKAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWH 66

Query: 60  EGL---FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKV 116
           E L    P  LGHE  G +E V EGV  ++ GD VI         C  C++G+   C  +
Sbjct: 67  ELLQPKLPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENL 126

Query: 117 RGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK---VC 173
                            +I+G           F+++      SV K+      +K   + 
Sbjct: 127 EF------------PGLNIDG----------GFAEFMRTSHRSVIKLPKDISREKLVEMA 164

Query: 174 LLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF 232
            L     T   AV      + PG+ VA+ G+G +G    +  K    + VI +D+  +K 
Sbjct: 165 PLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKL 224

Query: 233 D 233
            
Sbjct: 225 K 225

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score =  155 bits (393), Expect = 8e-46
 Identities = 56/235 (23%), Positives = 93/235 (39%), Gaps = 32/235 (13%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG--------KDPEGL 62
           +A    E  KPL ++++ V  P+  +V IK+    +CH+D +   G        +D    
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61

Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
            P  LGHE AG +E VG+ V     GD V          C +C+ G+ +LC   R   G 
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPR-WLG- 119

Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG 182
                      + +G           +++Y +V          +    +   L C   T 
Sbjct: 120 ----------INFDG----------AYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITT 159

Query: 183 LGAVWNTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL 236
             AV   A ++P   + V G  G +G    + AKA   + +IG+D+  +  +   
Sbjct: 160 YRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK 213

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score =  154 bits (392), Expect = 9e-46
 Identities = 73/242 (30%), Positives = 106/242 (43%), Gaps = 41/242 (16%)

Query: 9   TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCIL 67
             KAAV      PL I++V V  P  G+V++KI  + +CHTD +   G  P     P I 
Sbjct: 2   MMKAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIP 61

Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE  G V +VG GV+ V+ GD V +P   + C  C+ C  G   LC K +         
Sbjct: 62  GHEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTG------ 115

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGC-GVPTGLGA 185
                 +S+NG           + +Y V     V  +  +    ++  + C GV      
Sbjct: 116 ------YSVNG----------GYGEYVVADPNYVGLLPDKVGFVEIAPILCAGV-----T 154

Query: 186 VWN---TAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM 241
           V+         PG  V + G+G +G +AV + A+A G  RV  +DID  K +     LA 
Sbjct: 155 VYKGLKVTDTRPGQWVVISGIGGLGHVAV-QYARAMGL-RVAAVDIDDAKLN-----LAR 207

Query: 242 SL 243
            L
Sbjct: 208 RL 209

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score =  154 bits (392), Expect = 1e-45
 Identities = 64/241 (26%), Positives = 98/241 (40%), Gaps = 34/241 (14%)

Query: 9   TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE--GLFPCI 66
             KAA+  + ++PL IEDV +  PQ  EV I+I    +C TD   W G + +     P I
Sbjct: 3   KSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPII 62

Query: 67  LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           LGHE AG +  VGE + +V+ GD+V+         C++C+ GK N+C       G     
Sbjct: 63  LGHENAGTIVEVGE-LAKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQI-IPG----- 115

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
                  + NG           FS+Y +V               +   L     T +GA+
Sbjct: 116 ------QTTNG----------GFSEYMLVKSSRWLVKLNSLSPVEAAPLADAGTTSMGAI 159

Query: 187 ---WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRVLNALAMS 242
                        +V V G+G + +   +  KA   +  ++GI    K  D      A+ 
Sbjct: 160 RQALPFISKFAEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRD-----FALE 214

Query: 243 L 243
           L
Sbjct: 215 L 215

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score =  154 bits (391), Expect = 1e-45
 Identities = 71/228 (31%), Positives = 106/228 (46%), Gaps = 36/228 (15%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGH 69
           KAAV  +  +PL I++V+      GEV ++I    +CHTD +   G  P     P I GH
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61

Query: 70  EAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
           E  GIVE VG GVT ++ GD V IP   + C  C +C SG+  LC   + A         
Sbjct: 62  EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAG-------- 113

Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGC-GVPTGLGAVW 187
               +S++G           +++Y       V KI      ++   + C GV       +
Sbjct: 114 ----YSVDG----------GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGV-----TTY 154

Query: 188 N---TAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKK 231
                   +PG  VA++G+G +G +AV + AKA G   V+ +DI  +K
Sbjct: 155 KALKVTGAKPGEWVAIYGIGGLGHVAV-QYAKAMGL-NVVAVDIGDEK 200

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score =  151 bits (384), Expect = 3e-44
 Identities = 53/227 (23%), Positives = 86/227 (37%), Gaps = 38/227 (16%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KA         + + +V +  P   ++ +K+    +C TD +   G+ P    P  LGHE
Sbjct: 25  KAVRLESVGN-ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFPST-PPVTLGHE 82

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
             GIV   G  V ++ PG  +       C  C  C++G+ NLC  +R             
Sbjct: 83  FCGIVVEAGSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLR------------- 129

Query: 131 SRFSINGKPIYHFMGTST---FSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTGLG 184
                        +G      F++Y +V      +I              L C +     
Sbjct: 130 ------------AIGIHRDGGFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCL----H 173

Query: 185 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
            V + + ++ GS VA+ G G +GL   + A+ AGA+ VI       K
Sbjct: 174 GV-DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATK 219

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score =  150 bits (381), Expect = 4e-44
 Identities = 55/231 (23%), Positives = 88/231 (38%), Gaps = 41/231 (17%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF----PCI 66
           +A     P + L + D  V  P  GE+ +++   ++C TD + W   D         P +
Sbjct: 2   RALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKW-DAWARGRIRPPLV 60

Query: 67  LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
            GHE +G+VE+VG GV   Q GDHV       C  C  C++G  ++C   +         
Sbjct: 61  TGHEFSGVVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQ--------- 111

Query: 127 NDRKSRFSINGKPIYHFMGTS---TFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVP 180
                            +G      F++Y VV   +        P +   +    G  V 
Sbjct: 112 ----------------ILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAVH 155

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
           T             G  V + G G +GL  A   +A+GA  ++  D +P +
Sbjct: 156 TVY-----AGSGVSGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYR 201

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score =  148 bits (375), Expect = 4e-43
 Identities = 64/246 (26%), Positives = 96/246 (39%), Gaps = 50/246 (20%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF----PCI 66
            A +  +P     + +V V  P  GEV IK+L T++C TD + +   +         P I
Sbjct: 6   VAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEW-NEWAQSRIKPPQI 64

Query: 67  LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           +GHE AG V  +G GV  ++ GD+V       C +C  C+ G+ ++C   +         
Sbjct: 65  MGHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTK--------- 115

Query: 127 NDRKSRFSINGKPIYHFMGTST---FSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVP 180
                             G  T   F++Y VV   ++ K     P +   L   LG  V 
Sbjct: 116 ----------------IFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVD 159

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK--------F 232
           T L           G  V + G G +GL     AKA+GA  VI  +    +         
Sbjct: 160 TVLAG------PISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGA 213

Query: 233 DRVLNA 238
           D V+N 
Sbjct: 214 DYVINP 219

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score =  148 bits (375), Expect = 4e-43
 Identities = 59/248 (23%), Positives = 93/248 (37%), Gaps = 47/248 (18%)

Query: 11  KAAVAWEPNKPLVIEDVQV-APPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH 69
           K+ V       + + +  +       EVR+KI  + LC +D       +    +P  LGH
Sbjct: 2   KSVVNDTDGI-VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFK-NGAHYYPITLGH 59

Query: 70  EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
           E +G +++VG GV ++ PGD V       C  C  C  G  + C K              
Sbjct: 60  EFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYD------------ 107

Query: 130 KSRFSINGKPIYHFMGTS---TFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTGL 183
                        F+G+     F++Y VV   +V  +    P++       +  G+    
Sbjct: 108 -------------FIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGL---- 150

Query: 184 GAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK--------FDRV 235
            A    A+      V + G GT+GL   + A A GA  V  IDI  +K          + 
Sbjct: 151 HAFHL-AQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQT 209

Query: 236 LNALAMSL 243
            N+  MS 
Sbjct: 210 FNSSEMSA 217

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score =  147 bits (374), Expect = 5e-43
 Identities = 66/231 (28%), Positives = 101/231 (43%), Gaps = 37/231 (16%)

Query: 9   TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL-FPCIL 67
           T K  + +E +  L  +D+ V  P+A E+ I + ++ +CHTD + W G  P  +  P + 
Sbjct: 5   TQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVG 64

Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE AG+V  +GE V   + GD+  I      C  C++C+ G  + C     +       
Sbjct: 65  GHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSG------ 118

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGC-GVPT--GL 183
                 ++ +G          +F QY     V  A I     L +V  + C G+     L
Sbjct: 119 ------YTHDG----------SFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKAL 162

Query: 184 GAVWNTAKVEPGSIVAVFGLGTVGL---AVAEGAKAAGASRVIGIDIDPKK 231
                +A +  G  VA+ G    GL   AV + AKA G  RV+GID    K
Sbjct: 163 ----KSANLMAGHWVAISGAAG-GLGSLAV-QYAKAMGY-RVLGIDGGEGK 206

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score =  139 bits (353), Expect = 8e-40
 Identities = 55/237 (23%), Positives = 86/237 (36%), Gaps = 53/237 (22%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF----PCI 66
            + V       L +E+  +  P   EV +++    +C +D + W      G F    P +
Sbjct: 9   LSLV-VHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEY-GRIGNFIVKKPMV 66

Query: 67  LGHEAAGIVESVGEGVTEVQPGDHV-----IPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           LGHEA+G VE VG  V  ++PGD V      P         +FCK G+ NL   +     
Sbjct: 67  LGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPR-----ENDEFCKMGRYNLSPSIF---- 117

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTS----TFSQYTVVHDVSVAKIDPQAPLDKVCL--- 174
                                F  T        ++   +     K+      ++  L   
Sbjct: 118 ---------------------FCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEP 156

Query: 175 LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
           L  G+     A      V  G  V V G G +G+     AKA GA++V+  D+   +
Sbjct: 157 LSVGI----HAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATR 208

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score =  137 bits (347), Expect = 7e-39
 Identities = 46/245 (18%), Positives = 82/245 (33%), Gaps = 39/245 (15%)

Query: 11  KAAVAWEPNKPLVIEDVQV-APPQAGEVRIKILFTALCHTDAYTWSGKD-----PEGLFP 64
           KA +   PN  + ++DV        G+++I+ ++  +C  D    +GK      P+G   
Sbjct: 2   KAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDF 61

Query: 65  CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
            +LGHEA G+VE    G      GD V+P  +  C  C+ C  G+ + C        AG+
Sbjct: 62  LVLGHEAIGVVEESYHGF---SQGDLVMPVNRRGCGICRNCLVGRPDFCETGEF-GEAGI 117

Query: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL--LGCGVPT- 181
              D                G     ++       + KI        +    L     + 
Sbjct: 118 HKMD----------------GF--MREWWYDDPKYLVKIPKSIEDIGILAQPLADIEKSI 159

Query: 182 --------GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
                    +              V V G G +G+      +  G    +    +P + +
Sbjct: 160 EEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVE 219

Query: 234 RVLNA 238
           + +  
Sbjct: 220 QTVIE 224

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score =  137 bits (346), Expect = 2e-38
 Identities = 47/260 (18%), Positives = 82/260 (31%), Gaps = 58/260 (22%)

Query: 11  KAAVAWEPNKPLVIEDVQV-APPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF------ 63
             +  W   + + +E+V      +  E+ IK+    +C +D +     +   +       
Sbjct: 32  LGSKVWRYPE-VRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTG 90

Query: 64  -PCILGHEAAGIVESVGEGVTE------VQPGDHVIPCYQAECRECKFCKSGKTNLCGKV 116
            P  LGHE +G+V   G            + G+ V       C  C+ C  G  N C  +
Sbjct: 91  FPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENL 150

Query: 117 RGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI-------DPQAPL 169
                 G          +++G           F++Y  V       +       +     
Sbjct: 151 NEL---GF---------NVDG----------AFAEYVKVDAKYAWSLRELEGVYEGDRLF 188

Query: 170 DKVCL---LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
               L              +     + PG  V + G G +GLA     K AGAS+VI  +
Sbjct: 189 LAGSLVEPTSVAYN---AVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSE 245

Query: 227 IDPKK--------FDRVLNA 238
               +         D V++ 
Sbjct: 246 PSEVRRNLAKELGADHVIDP 265

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score =  135 bits (341), Expect = 5e-38
 Identities = 58/239 (24%), Positives = 84/239 (35%), Gaps = 48/239 (20%)

Query: 7   VITCKAAVAWEPNKPLVIEDVQVAP-PQAGEVRIKILFTALCHTD--AYTWSGKDPEGLF 63
           V T      W       +E VQ     + GEV + +  T +C +D   +        G  
Sbjct: 12  VFTNPQHDLWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKH---GCIGPM 68

Query: 64  ----PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGA 119
                 +LGHE+AG V +V   V  ++ GD V    Q  C  C+ C +G+ N C +V   
Sbjct: 69  IVECDHVLGHESAGEVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVD-- 126

Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTS----TFSQYTVVHDVSVAKIDPQAPLDKVCL- 174
                                  F+ T        +Y     V   KI      +   + 
Sbjct: 127 -----------------------FLSTPPVPGLLRRYVNHPAVWCHKI-GNMSYENGAML 162

Query: 175 --LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
             L   +     A    A V  G  V + G G +GL     AKAAGA  ++  DID  +
Sbjct: 163 EPLSVAL-----AGLQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGR 216

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score =  133 bits (337), Expect = 2e-37
 Identities = 51/222 (22%), Positives = 81/222 (36%), Gaps = 25/222 (11%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           K        K +   + +   P   +  ++ L  A C +D +T            ILGHE
Sbjct: 2   KGFAMLSIGK-VGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGERHNMILGHE 60

Query: 71  AAGIVESVGEGVTEVQPGDHVI-PCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
           A G V  VG  V + +PGD V+ P            + G     G   G        N  
Sbjct: 61  AVGEVVEVGSEVKDFKPGDRVVVPAITP-DWRTSEVQRGYHQHSG---GMLAGWKFSN-- 114

Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
                 +G           F ++  V+  D+++A +  + PL+   ++   + TG     
Sbjct: 115 ----VKDG----------VFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAE 160

Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229
             A ++ G  V V G+G VGL    GA   GA R+  +    
Sbjct: 161 L-ANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRK 201

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score =  133 bits (336), Expect = 2e-37
 Identities = 62/231 (26%), Positives = 94/231 (40%), Gaps = 42/231 (18%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GK--DPEGLFPCIL 67
            +AV       L +E   +  P+  EV +++ +  +C +D + +  G+  D     P ++
Sbjct: 6   LSAV-LYKQNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVI 64

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           GHEA+G V  VG+ V  ++ GD V       CR C+FCK GK NLC  +           
Sbjct: 65  GHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLT---------- 114

Query: 128 DRKSRFSINGKPIYHFMGTS----TFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVP 180
                          F  T       ++Y V       K+     L++  L   L  GV 
Sbjct: 115 ---------------FCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALLEPLSVGV- 158

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
               A    A V+ G+ V V G G +GL     AKA GA  V+     P++
Sbjct: 159 ---HAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTARSPRR 204

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score =  128 bits (324), Expect = 1e-35
 Identities = 44/239 (18%), Positives = 78/239 (32%), Gaps = 36/239 (15%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK---DPEGLFPCIL 67
           KA          V+ +     P++GE  ++ L   +C TD    +G     PEG    +L
Sbjct: 2   KAIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVL 61

Query: 68  GHEAAGIVESVGEGVTEVQPGDHV--IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
           GHEA G+V  V    TE++ GD V             ++ +  + ++           V 
Sbjct: 62  GHEAVGVV--VDPNDTELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVG 119

Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGV-PT 181
                     +G            S++    +  + +I P++  +   L   +       
Sbjct: 120 A---------HG----------YMSEFFTSPEKYLVRI-PRSQAELGFLIEPISITEKAL 159

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKA--AGASRVIGI---DIDPKKFDRV 235
                  +A     S   V G G++GL      K    G   +  +   D      D +
Sbjct: 160 EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDII 218

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score =  112 bits (282), Expect = 3e-29
 Identities = 58/233 (24%), Positives = 95/233 (40%), Gaps = 33/233 (14%)

Query: 13  AVAWEPNKPLVIEDVQ----VAP--PQAGEVRIKILFTALCHTDAYTWSGKDP--EGLFP 64
           +V +   + L +E V               V +K++ T +C +D + + G+    +G   
Sbjct: 5   SVVYHGTRDLRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFIVPKGH-- 62

Query: 65  CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC--GKVRGATGA 122
            +LGHE  G V   G  V  +  GD V   +   C  C+ CK  ++++C    V      
Sbjct: 63  -VLGHEITGEVVEKGSDVELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADL 121

Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKI----DPQAPLDKVCLLG 176
           G             G  +  + G    ++Y +V   D  + K          +  + L+ 
Sbjct: 122 G-----------AFGFDLKGWSGGQ--AEYVLVPYADYMLLKFGDKEQAMEKIKDLTLIS 168

Query: 177 CGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229
             +PTG     + A V+PGS V + G G VG   A GA+  GA+ VI  D +P
Sbjct: 169 DILPTGFHGCVS-AGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNP 220

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score =  111 bits (279), Expect = 7e-29
 Identities = 65/234 (27%), Positives = 94/234 (40%), Gaps = 35/234 (14%)

Query: 13  AVAWEPNKPLVIEDVQVA-------PPQAGEVRIKILFTALCHTDAYTWSGKDP--EGLF 63
            V +  +  + ++ +                V +K++ T +C +D +   G+     GL 
Sbjct: 5   GVVYLGSGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQVGL- 63

Query: 64  PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAG 123
             +LGHE  G V   G  V  +Q GD V   +   C  C+ CK   T +C  V  A   G
Sbjct: 64  --VLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGG 121

Query: 124 VMMNDRKSRFSINGKPIYHFMGTSTFSQ--YTVVH--DVSVAKI----DPQAPLDKVCLL 175
                        G   Y  MG  T  Q  Y +V   D ++ K+         +  +  L
Sbjct: 122 -----------AYG---YVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKIRDLTCL 167

Query: 176 GCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229
              +PTG       A V PGS V V G G VGLA A  A+  GA+ VI  D++P
Sbjct: 168 SDILPTGYHGAVT-AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP 220

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score =  110 bits (278), Expect = 8e-29
 Identities = 63/238 (26%), Positives = 99/238 (41%), Gaps = 32/238 (13%)

Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
            +   +  KA  A+   +PL   D+    P   +V+I+I +  +CH+D +    +    +
Sbjct: 16  YKKAGLKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTV 75

Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           +PC+ GHE  G V +VG+ V +  PGD V + C    C+ C+ C+ G  N C        
Sbjct: 76  YPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYC-------- 127

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTST---FSQYTVVHDVSVAKI-DPQAPLDKVCLLGC 177
                       + N           T   +SQ  VVH+  V +I  PQ  L  V  L C
Sbjct: 128 -------DHMTGTYNSP--TPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLC 178

Query: 178 GVPTGLGAVWN---TAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKK 231
              T     ++     +  PG  V V G+G +G + + + A A GA  V+       K
Sbjct: 179 AGIT----TYSPLRHWQAGPGKKVGVVGIGGLGHMGI-KLAHAMGA-HVVAFTTSEAK 230

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score =  107 bits (269), Expect = 1e-27
 Identities = 60/245 (24%), Positives = 95/245 (38%), Gaps = 41/245 (16%)

Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           +      A + +  L   +         +VR K+L+  +CH+D ++        ++P + 
Sbjct: 15  VKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPLVP 74

Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE  G V  VG  V +V  GD V + C    C  C+ C +   N C             
Sbjct: 75  GHEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYC------------- 121

Query: 127 NDRKSRFSINGKPIYHFMGTST---FSQYTVVHDVSVAKIDPQAPLDKVCLLGC-GVPT- 181
              K   +       +  GT T   +S + V ++  + +     PLD    L C G+   
Sbjct: 122 --PKMILTYASI---YHDGTITYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVY 176

Query: 182 ------GLGAVWNTAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKKFDR 234
                 GL         EPG  + + GLG +G +AV + AKA G+ +V  I   P K + 
Sbjct: 177 SPLKYFGLD--------EPGKHIGIVGLGGLGHVAV-KFAKAFGS-KVTVISTSPSKKEE 226

Query: 235 VLNAL 239
            L   
Sbjct: 227 ALKNF 231

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score =  105 bits (264), Expect = 6e-27
 Identities = 65/232 (28%), Positives = 102/232 (43%), Gaps = 30/232 (12%)

Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           +  K    +  ++     D         +V I IL+  +CH+D ++   +  EG++P I 
Sbjct: 3   VQSKGFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMIP 62

Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE AGI++ VG+GV + + GD V + C+   C+ CK CK  +   C             
Sbjct: 63  GHEIAGIIKEVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFC------------- 109

Query: 127 NDRKSRFSINGKPIYHFMGTST---FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGL 183
              K  F+ +    +H         +S   VV +  V  +D  APL+KV  L C   T  
Sbjct: 110 --TKVVFTYDCLDSFH-DNEPHMGGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGIT-- 164

Query: 184 GAVWN---TAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKK 231
              ++    +KV  G+ V V G G +G +AV + A A GA  V     +  K
Sbjct: 165 --TYSPLKFSKVTKGTKVGVAGFGGLGSMAV-KYAVAMGA-EVSVFARNEHK 212

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score =  104 bits (261), Expect = 2e-26
 Identities = 63/250 (25%), Positives = 90/250 (36%), Gaps = 37/250 (14%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M             A +P+  L      +      +V I+I+   +CHTD +        
Sbjct: 1   MGIMEAERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGM 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGA 119
             +P + GHE  G V  VG  V++   GD V + C    C  C  C+      C      
Sbjct: 61  SNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYC------ 114

Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTST---FSQYTVVHDVSVAKIDPQAPLDKVCLLG 176
                     K  +S N     +  G  T   F++ TVVH   V KI     +++   L 
Sbjct: 115 ---------PKKIWSYNDV---YINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLL 162

Query: 177 CGVPTGLGAV------WNTAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDP 229
           C   T    V      +   +  PG    + GLG VG + V + AKA G   V  I    
Sbjct: 163 CAGVT----VYSPLSHFGLKQ--PGLRGGILGLGGVGHMGV-KIAKAMGH-HVTVISSSN 214

Query: 230 KKFDRVLNAL 239
           KK +  L  L
Sbjct: 215 KKREEALQDL 224

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score = 98.0 bits (244), Expect = 7e-24
 Identities = 39/241 (16%), Positives = 78/241 (32%), Gaps = 44/241 (18%)

Query: 17  EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG--------------- 61
           +  K L + +V +      EV + ++ +++ +   ++   +                   
Sbjct: 45  DVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQGGWAT 104

Query: 62  ---LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRG 118
                  +LG + +G+V   G GV   +PGDHVI  + A   E +    G   L  + R 
Sbjct: 105 RHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVI-VHPAHVDEQEPATHGDGMLGTEQRA 163

Query: 119 ATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 178
                             G            ++Y VV    +         ++  +    
Sbjct: 164 WGFETN-----------FG----------GLAEYGVVRASQLLPKPAHLTWEEAAVSPLC 202

Query: 179 VPTGLGAV--WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV 235
             T    +     A+++ G IV ++G  G +G    +  K  G    + +    +K   V
Sbjct: 203 AGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQKEAAV 261

Query: 236 L 236
            
Sbjct: 262 R 262

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score = 96.5 bits (241), Expect = 1e-23
 Identities = 58/219 (26%), Positives = 90/219 (41%), Gaps = 31/219 (14%)

Query: 11  KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL-FPCIL 67
           +A V      P  L + D+ V  P   EVR+++   AL H D +   G     L  P +L
Sbjct: 2   RAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVL 61

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC--GKVRGATGAGVM 125
           G + +G+V++VG GV    PGD V+      C  C+ C +G+ NLC   ++ G    G  
Sbjct: 62  GADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHG-- 119

Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
                                 T+++Y V+ + ++A        ++   +     T    
Sbjct: 120 ----------------------TYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQM 157

Query: 186 VWNTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVI 223
           V +   V PG  V V      V +A  + AK  GA RVI
Sbjct: 158 VVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVI 195

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score = 91.8 bits (229), Expect = 5e-22
 Identities = 53/240 (22%), Positives = 83/240 (34%), Gaps = 34/240 (14%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           MS   +     A  + E  K          P    ++ IKI    +C +D +  +G    
Sbjct: 1   MSYPEKF-EGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGN 59

Query: 61  GLFPCILGHEAAGIVESVGEGV-TEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRG 118
              P ++GHE  G V  +G    + ++ G  V +      C EC  CK+     C     
Sbjct: 60  MKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYC----- 114

Query: 119 ATGAGVMMNDRKSRFSINGKPIYHFMGTST---FSQYTVVHDVSVAKIDPQAPLDKVCLL 175
                      K   + +     +  G  +   ++ Y  VH+  V  I    P      L
Sbjct: 115 ----------TKFVTTYSQP---YEDGYVSQGGYANYVRVHEHFVVPIPENIPSHLAAPL 161

Query: 176 GCGVPTGLGAVWN---TAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKK 231
            CG  T    V++        PG  V + GLG +G +     +KA GA     I    +K
Sbjct: 162 LCGGLT----VYSPLVRNGCGPGKKVGIVGLGGIGSMGT-LISKAMGA-ETYVISRSSRK 215

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 91.6 bits (228), Expect = 7e-22
 Identities = 47/227 (20%), Positives = 82/227 (36%), Gaps = 55/227 (24%)

Query: 17  EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK---DPEGLFPCILGHEAAG 73
           +P K + ++++++A  +  +VR+K+L   +  +D     G     PE   P + G+E   
Sbjct: 37  DPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPE--LPAVGGNEGVA 94

Query: 74  IVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRF 133
            V +VG  VT ++PGD VIP                                        
Sbjct: 95  QVVAVGSNVTGLKPGDWVIPA--------------------------------------- 115

Query: 134 SINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVE 193
                      G  T+    V  + ++ ++    PL     LG    T    + +  +++
Sbjct: 116 ---------NAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQ 166

Query: 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNAL 239
           PG  V        VG AV + A A G  R I +  D     ++ + L
Sbjct: 167 PGDSVIQNASNSGVGQAVIQIAAALGL-RTINVVRDRPDIQKLSDRL 212

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score = 89.2 bits (222), Expect = 6e-21
 Identities = 46/203 (22%), Positives = 73/203 (35%), Gaps = 27/203 (13%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL-FPCILGHEAAGIVESVGE 80
           L + +  V      ++ ++ L  +L + D           L FP +   + +G+VE+VG+
Sbjct: 41  LKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGK 100

Query: 81  GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPI 140
            VT  +PGD VI  +     +     +G+T    +  G    GV                
Sbjct: 101 SVTRFRPGDRVISTFAPGWLDGLRPGTGRTPA-YETLGGAHPGV---------------- 143

Query: 141 YHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAV 200
                    S+Y V+ +             +   L C   T   A+     +  G  V V
Sbjct: 144 --------LSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVV 195

Query: 201 FGLGTVGLAVAEGAKAAGASRVI 223
            G G V L   + AKA GA  VI
Sbjct: 196 QGTGGVALFGLQIAKATGA-EVI 217

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score = 89.1 bits (221), Expect = 1e-20
 Identities = 40/259 (15%), Positives = 78/259 (30%), Gaps = 47/259 (18%)

Query: 2   STEGQVITCKAAVAWE---PNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK- 57
           +         A +      P K + ++DV V     GE  + ++ +++ +   +T   + 
Sbjct: 35  TVHKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEP 94

Query: 58  -----------------DPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECR 100
                                L   ++G + AG+V   G GV   Q GD V+    +   
Sbjct: 95  LSTFGFLERYGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVEL 154

Query: 101 ECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV 160
           E          +    +   G                            ++  +V    +
Sbjct: 155 ESSDG--HNDTMLDPEQRIWGFE--------------------TNFGGLAEIALVKSNQL 192

Query: 161 AKIDPQAPLDKVCLLGCGVPTGLGAV--WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAA 217
                    ++    G    T    +   N A ++ G  V ++G  G +G    + A A 
Sbjct: 193 MPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAG 252

Query: 218 GASRVIGIDIDPKKFDRVL 236
           GA   I +   P+K +   
Sbjct: 253 GA-NPICVVSSPQKAEICR 270

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score = 79.9 bits (198), Expect = 9e-18
 Identities = 40/226 (17%), Positives = 67/226 (29%), Gaps = 54/226 (23%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DP 59
           MS  G++I         P   L +E   + P +  EV +++L   +  +D    +G    
Sbjct: 1   MSLHGKLIQFHKF--GNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAH 58

Query: 60  EGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGA 119
               P I G+E  GIVE+VG  V+    G  V+P                          
Sbjct: 59  RIPLPNIPGYEGVGIVENVGAFVSRELIGKRVLP-------------------------L 93

Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 179
            G G                        T+ +Y       V  I           +    
Sbjct: 94  RGEG------------------------TWQEYVKTSADFVVPIPDSIDDFTAAQMYINP 129

Query: 180 PTGLGAVWNTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIG 224
            T       T  ++   ++ V      +G   A+ ++     R+I 
Sbjct: 130 LTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIA 174

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 77.1 bits (190), Expect = 1e-16
 Identities = 41/238 (17%), Positives = 61/238 (25%), Gaps = 59/238 (24%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
            A    + ++  V            +V +++   A+  +D    S +         LG +
Sbjct: 13  TALTVNDHDEVTVWNAAPCPMLPRDQVYVRVEAVAINPSD---TSMRGQFATPWAFLGTD 69

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
            AG V +VG  VT +Q GD V                      G                
Sbjct: 70  YAGTVVAVGSDVTHIQVGDRV---------------------YGAQNEMCP--------- 99

Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT--------- 181
                             FSQYTV      AKI      ++   L  G+ T         
Sbjct: 100 -----------RTPDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLG 148

Query: 182 -GLGAVWNTAKVEPGSIVAVF---GLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV 235
             L +            V V    G         +  + +G    I     P  FD  
Sbjct: 149 LPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGY-IPIAT-CSPHNFDLA 204

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 76.7 bits (189), Expect = 2e-16
 Identities = 39/261 (14%), Positives = 73/261 (27%), Gaps = 77/261 (29%)

Query: 7   VITCKAAVAWE---PNKPLVIEDVQVAPPQ--AGEVRIKILFTALCHTDAYTWSGK---- 57
           +IT +A +  +   P   L  +  ++        EV +K L + +  +D     G     
Sbjct: 1   MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSK 60

Query: 58  ------DPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTN 111
                           G+E    V  VG  V+ ++ GD VIP                  
Sbjct: 61  PAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPS----------------- 103

Query: 112 LCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA---- 167
                                           +   T+  + + +D    K+   A    
Sbjct: 104 -------------------------------HVNFGTWRTHALGNDDDFIKLPNPAQSKA 132

Query: 168 -------PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF--GLGTVGLAVAEGAKAAG 218
                   +++   +     T    + +  K+ PG    +   G   VG   ++  K   
Sbjct: 133 NGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLN 192

Query: 219 ASRVIGIDIDPKKFDRVLNAL 239
               I +  D    D V+ +L
Sbjct: 193 F-NSISVIRDRPNLDEVVASL 212

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 72.3 bits (178), Expect = 5e-15
 Identities = 44/209 (21%), Positives = 65/209 (31%), Gaps = 60/209 (28%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81
           L   +   A P   E++++     +   D Y  SG  P    P  LG EAAGIV  VG G
Sbjct: 16  LQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSG 75

Query: 82  VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIY 141
           V  ++ GD V                                                +Y
Sbjct: 76  VKHIKAGDRV------------------------------------------------VY 87

Query: 142 HFMGTSTFSQYTVVHDVSVAKIDPQAPLDKV--CLLGCGVPTGLGA---VWNTAKVEPGS 196
                  +S    +     A +      ++     L      GL     +  T +++P  
Sbjct: 88  AQSALGAYSSVHNIIADKAAILPAAISFEQAAASFL-----KGLTVYYLLRKTYEIKPDE 142

Query: 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIG 224
                   G VGL   + AKA GA ++IG
Sbjct: 143 QFLFHAAAGGVGLIACQWAKALGA-KLIG 170

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 71.1 bits (175), Expect = 9e-15
 Identities = 25/70 (35%), Positives = 32/70 (45%)

Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81
          L   D +   P    V ++     L   D Y  SG  P    P  LG E AG+VE+VG+ 
Sbjct: 16 LEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPSGLGAEGAGVVEAVGDE 75

Query: 82 VTEVQPGDHV 91
          VT  + GD V
Sbjct: 76 VTRFKVGDRV 85

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score = 70.7 bits (174), Expect = 1e-14
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG--KDPEGLFPCILG 68
           AAV  E N P V+  +    P  G+V ++I  +     DA   +G     +   P ILG
Sbjct: 9  IAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILG 68

Query: 69 HEAAGIVESVGEGVTEVQPGDHV 91
           + AG V +VG  V   + GD V
Sbjct: 69 MDLAGTVVAVGPEVDSFRVGDAV 91

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score = 70.3 bits (173), Expect = 2e-14
 Identities = 40/231 (17%), Positives = 65/231 (28%), Gaps = 73/231 (31%)

Query: 11  KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-----EGLF 63
           KA    +   P  L + D      +  ++ IK+   +L   D  T +G        +   
Sbjct: 8   KAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNL 67

Query: 64  PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAG 123
           P  LG++ +G V  +G  V  V  GD V                      G         
Sbjct: 68  PSGLGYDFSGEVIELGSDVNNVNIGDKV---------------------MGIAGFPDHPC 106

Query: 124 VMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP------QAPLDKVCLLGC 177
                                    +++Y      ++ +         QA          
Sbjct: 107 ------------------------CYAEYVCASPDTIIQK-LEKLSFLQA---------A 132

Query: 178 GVPTGLGAVWN---TAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIG 224
            +PT           A+V+ G +V +    G VG    + AK  G   VI 
Sbjct: 133 SLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVIT 182

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 69.9 bits (172), Expect = 3e-14
 Identities = 46/208 (22%), Positives = 69/208 (33%), Gaps = 57/208 (27%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81
           +  ED  V      E+ IK  +T + + ++Y   G  P    P +LG EA+G V + G+G
Sbjct: 23  IKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPCEK-PYVLGREASGTVVAKGKG 81

Query: 82  VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIY 141
           VT  + GD V                                                  
Sbjct: 82  VTNFEVGDQVA------------------------------------------------- 92

Query: 142 HFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT-GLGA---VWNTAKVEPGSI 197
            ++  STF+QY+ +         P+   D+   L        L A         V+ G  
Sbjct: 93  -YISNSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDY 151

Query: 198 VAVFGL-GTVGLAVAEGAKAAGASRVIG 224
           V +F   G VGL + +  K  GA   I 
Sbjct: 152 VLLFAAAGGVGLILNQLLKMKGA-HTIA 178

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 68.4 bits (168), Expect = 1e-13
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG---KDPEGLFPCILGHEAAGIVESV 78
           V E+V+V  P  G+VR++     +   D Y  +G       G  P ++G EAA +VE V
Sbjct: 16 FVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEV 75

Query: 79 GEGVTEVQPGDHV 91
          G GVT+   G+ V
Sbjct: 76 GPGVTDFTVGERV 88

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score = 67.6 bits (166), Expect = 2e-13
 Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 3/84 (3%)

Query: 11 KAAVAWE---PNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
          +    W        + +  V +    A ++ ++     +   D               + 
Sbjct: 3  EQHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINWSNGHVP 62

Query: 68 GHEAAGIVESVGEGVTEVQPGDHV 91
          G + AG++  VG  V     G  V
Sbjct: 63 GVDGAGVIVKVGAKVDSKMLGRRV 86

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 66.1 bits (162), Expect = 6e-13
 Identities = 45/219 (20%), Positives = 68/219 (31%), Gaps = 57/219 (26%)

Query: 11  KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCI 66
           KA  A   + P  LV  DV+        V + +    +C  D     G+        P +
Sbjct: 23  KAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEP-PFV 81

Query: 67  LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
            G E AG+V S  EG + ++PGD V+                              G   
Sbjct: 82  PGIETAGVVRSAPEG-SGIKPGDRVM-------------------------AFNFIG--- 112

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
                                 +++   V   ++    PQ    +   L     T   A 
Sbjct: 113 ---------------------GYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAY 151

Query: 187 WNTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIG 224
               ++  G  V V G  G +G A  + AK  GA +VI 
Sbjct: 152 ARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIA 189

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 65.7 bits (161), Expect = 8e-13
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCI 66
          +A V         L +    +  PQ GE++I++    L   D     G   +P    P +
Sbjct: 5  RAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKT-PLV 63

Query: 67 LGHEAAGIVESVGEGVTEVQPGDHVI 92
           G E +GIVE++G+ V   + GD V+
Sbjct: 64 PGFECSGIVEALGDSVKGYEIGDRVM 89

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 36/230 (15%), Positives = 61/230 (26%), Gaps = 60/230 (26%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
             +  Q +              +  D  V  P  G++ ++  F  +  +D    +G+   
Sbjct: 20  FQSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDP 79

Query: 61  G-LFPCILGHEAAGIVESVGEGVTE-VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRG 118
               P  +G E  G V ++G   +     G  V                           
Sbjct: 80  SVKPPFDIGFEGIGEVVALGLSASARYTVGQAVA-------------------------- 113

Query: 119 ATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 178
                                   +M   +F++YTVV       +    P      L   
Sbjct: 114 ------------------------YMAPGSFAEYTVVPASIATPVPSVKPE----YLTLL 145

Query: 179 VP--TGLGAVWNTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGI 225
           V   T   ++     +  G  V V    G  G    + +K A    VIG 
Sbjct: 146 VSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGT 194

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 64.1 bits (157), Expect = 3e-12
 Identities = 41/209 (19%), Positives = 73/209 (34%), Gaps = 61/209 (29%)

Query: 23  VIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCILGHEAAGIVESVGE 80
           +  D+ V  P+  +V IK+    +   + Y  SG       L P   G + AG++E+VG+
Sbjct: 46  LRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLL-PYTPGSDVAGVIEAVGD 104

Query: 81  GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPI 140
             +  + GD V                             G                   
Sbjct: 105 NASAFKKGDRVF--------------------TSSTIS--GG------------------ 124

Query: 141 YHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW----NTAKVEPGS 196
                   +++Y +  D +V K+  +    +    G  +       +    ++A V+ G 
Sbjct: 125 --------YAEYALAADHTVYKLPEKLDFKQ----GAAIGIPYFTAYRALIHSACVKAGE 172

Query: 197 IVAVFG-LGTVGLAVAEGAKAAGASRVIG 224
            V V G  G VGLA  + A+A G  +++G
Sbjct: 173 SVLVHGASGGVGLAACQIARAYGL-KILG 200

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 19/75 (25%), Positives = 37/75 (49%)

Query: 17  EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVE 76
             +  L+  ++    P   ++ +++   ++   D        P+G    ++G++AAGIV 
Sbjct: 35  TDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWKVIGYDAAGIVS 94

Query: 77  SVGEGVTEVQPGDHV 91
           +VG  VT  +PGD V
Sbjct: 95  AVGPDVTLFRPGDEV 109

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score = 60.3 bits (147), Expect = 7e-11
 Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 11  KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCI 66
           +         P  +VI    +     GEV ++     +   D     G    P+     I
Sbjct: 30  RFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDA-SPI 88

Query: 67  LGHEAAGIVESVGEGVTEVQPGDHVI 92
           LG E +G +  VG GV+    GD V 
Sbjct: 89  LGLELSGEIVGVGPGVSGYAVGDKVC 114

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 29/228 (12%), Positives = 53/228 (23%), Gaps = 59/228 (25%)

Query: 5   GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGL 62
           G   T   +        L    + V  P   +V IK+   ++  +D     G+   P   
Sbjct: 20  GYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVK 79

Query: 63  FPCILGHEAAGIVESVGEGV-TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
                G E  G + + G+    +   G  V                          G + 
Sbjct: 80  -GRPAGFEGVGTIVAGGDEPYAKSLVGKRVAF----------------------ATGLSN 116

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G                        ++++Y V    +   +      +     G  +  
Sbjct: 117 WG------------------------SWAEYAVAEAAACIPLLDTVRDED----GAAMIV 148

Query: 182 GLGAVWN---TAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGI 225
                       K E      +      +   +   AK  G  R I  
Sbjct: 149 NPLTAIAMFDIVKQEGEKAFVMTAGASQLCKLIIGLAKEEGF-RPIVT 195

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 8  ITCKAAVAWEP-----NKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
          ++ KA    +P            ++ +  P+  E+ +KI   ++   D         +  
Sbjct: 1  MSLKAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMDVSK-- 58

Query: 63 FPCILGHEAAGIVESVGEGVTEVQPGDHV 91
           P +LG +A G+VESVG  VT    GD V
Sbjct: 59 APRVLGFDAIGVVESVGNEVTMFNQGDIV 87

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 28/71 (39%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81
           LV E    AP   GEVRI +    +   DA    G  P       LG E AG+V   G G
Sbjct: 226 LVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYPG---VASLGSEGAGVVVETGPG 282

Query: 82  VTEVQPGDHVI 92
           VT + PGD V+
Sbjct: 283 VTGLAPGDRVM 293

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score = 55.5 bits (134), Expect = 3e-09
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 19/100 (19%)

Query: 11  KAAVAWEPNKPLVI---EDVQV-APPQAGEVRIKILFTALCHTDAYTWSGKDPEGL---- 62
            A V  +  K  V+   +++ +       EV +K+   ++   D    SG     L    
Sbjct: 23  MAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKR 82

Query: 63  -----------FPCILGHEAAGIVESVGEGVTEVQPGDHV 91
                      FP  LG + +G+V   G  V   +PGD V
Sbjct: 83  DPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEV 122

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 11  KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCI 66
            A    +P  P  L +++V    P  GEV +K+  +AL   D     G+   P G    I
Sbjct: 24  LAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGA-SNI 82

Query: 67  LGHEAAGIVESVGEGV-TEVQPGDHV 91
           LG EA+G V  +G G     + GD  
Sbjct: 83  LGLEASGHVAELGPGCQGHWKIGDTA 108

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 52.2 bits (125), Expect = 3e-08
 Identities = 15/99 (15%), Positives = 24/99 (24%), Gaps = 29/99 (29%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG------------------------- 56
           L ++ +    P   EV I+I  + L  +D     G                         
Sbjct: 20  LSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEG 79

Query: 57  ----KDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV 91
                         +G+E AG+V   G            
Sbjct: 80  AMRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKT 118

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score = 45.2 bits (108), Expect = 6e-06
 Identities = 36/220 (16%), Positives = 56/220 (25%), Gaps = 72/220 (32%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCILG 68
           KA V      PL + D+     + GEV +++    L   D     G         P I G
Sbjct: 2   KAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHP-PFIPG 60

Query: 69  HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
            E  G+VE           G                                  G     
Sbjct: 61  MEVVGVVE-----------GRRYA-------------------------ALVPQG----- 79

Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
                                ++   V   ++  +      ++        P      + 
Sbjct: 80  -------------------GLAERVAVPKGALLPLPEGLSPEE----AAAFPVSFLTAYL 116

Query: 189 ---TAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIG 224
               A+  PG  V V    G +G A  + A+A G  RV+ 
Sbjct: 117 ALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLA 155

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* Length = 144

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN 237
            AV GLG  G ++ +     G   V+ +DI+ +K +   +
Sbjct: 9   FAVIGLGRFGGSIVKELHRMGHE-VLAVDINEEKVNAYAS 47

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} Length = 141

 Score = 37.6 bits (88), Expect = 8e-04
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNAL 239
             V G    G+ +     AAG  +V+ +D   +K + + +  
Sbjct: 9   YIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDEG 49

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	243
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	100.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	100.0
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	100.0
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	100.0
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	100.0
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	100.0
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	99.97
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.96
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	99.96
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.84
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.34
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.7
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.35
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	97.6
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	97.55
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.54
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.49
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.47
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	97.42
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.25
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.05
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.03
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.0
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.79
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.78
2b25_A	336	Hypothetical protein; structural genomics, methyl	96.77
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.69
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.64
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.63
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	96.6
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	96.52
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	96.38
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.38
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	96.35
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	96.24
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.19
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	96.15
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	96.12
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	96.08
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	96.06
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.0
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	95.9
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	95.72
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	95.68
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	95.61
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	95.5
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	95.36
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	95.33
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.3
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	95.24
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	95.19
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	95.12
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	95.1
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	95.09
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	95.06
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	95.06
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	95.04
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	95.03
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	95.02
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	94.99
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	94.98
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	94.95
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	94.92
4dqx_A	277	Probable oxidoreductase protein; structural genomi	94.91
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	94.9
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	94.88
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	94.88
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	94.86
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	94.85
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	94.82
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.82
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	94.81
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	94.81
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	94.79
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	94.77
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	94.74
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	94.73
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	94.72
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	94.69
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	94.68
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	94.65
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	94.63
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	94.59
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	94.58
3cxt_A	291	Dehydrogenase with different specificities; rossma	94.57
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	94.56
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	94.51
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	94.48
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	94.47
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	94.47
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	94.46
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	94.43
3rih_A	293	Short chain dehydrogenase or reductase; structural	94.38
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	94.37
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	94.35
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	94.34
1xhl_A	297	Short-chain dehydrogenase/reductase family member	94.26
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	94.25
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	94.24
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	94.2
1xq1_A	266	Putative tropinone reducatse; structural genomics,	94.19
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	94.18
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	94.13
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	94.13
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	94.12
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	94.09
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	94.03
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	93.98
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	93.97
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	93.94
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	93.93
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	93.9
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	93.89
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	93.87
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	93.83
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	93.82
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	93.82
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	93.8
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	93.73
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	93.71
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	93.71
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	93.69
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	93.63
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	93.62
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	93.57
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	93.54
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	93.52
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	93.45
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	93.45
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	93.42
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	93.41
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	93.37
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	93.35
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	93.33
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	93.32
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	93.18
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	93.14
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	93.12
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	93.11
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	93.09
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	93.07
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	93.06
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	92.89
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	92.83
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	92.81
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	92.8
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	92.8
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	92.76
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	92.72
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	92.72
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.7
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	92.7
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	92.69
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	92.65
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	92.6
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	92.57
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	92.57
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	92.52
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	92.48
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.45
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	92.41
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	92.39
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	92.38
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	92.24
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	92.24
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	92.22
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	92.19
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	92.19
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	92.18
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	92.08
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	91.99
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	91.88
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	91.85
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	91.76
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	91.75
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	91.63
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	91.62
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	91.62
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	91.59
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	91.54
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	91.51
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	91.37
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	91.29
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	91.27
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	91.24
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	91.2
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	91.08
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	91.04
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	90.93
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	90.91
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	90.89
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	90.74
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	90.69
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	90.59
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	90.53
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	90.5
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	90.47
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	90.46
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	90.44
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	90.42
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	90.4
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	90.31
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	90.29
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	90.19
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	90.08
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	90.04
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	90.04
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	89.94
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	89.94
3qha_A	296	Putative oxidoreductase; seattle structural genomi	89.94
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	89.94
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	89.92
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	89.91
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	89.85
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	89.81
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	89.77
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	89.77
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	89.58
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	89.42
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	89.42
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	89.39
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	89.36
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	89.3
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	89.28
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	89.27
3l07_A	285	Bifunctional protein fold; structural genomics, ID	89.2
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	89.17
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	88.96
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	88.95
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	88.84
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	88.82
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	88.76
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	88.69
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	88.68
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	88.67
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	88.66
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	88.59
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	88.5
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	88.42
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	88.35
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	88.32
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	88.14
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	87.99
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	87.99
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	87.94
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	87.91
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	87.88
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	87.86
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	87.83
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	87.81
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	87.79
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	87.78
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	87.77
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	87.75
3f4k_A	257	Putative methyltransferase; structural genomics, P	87.66
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	87.66
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	87.52
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	87.5
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	87.46
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	87.41
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	87.29
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	87.07
4f6c_A	427	AUSA reductase domain protein; thioester reductase	87.0
1id1_A	153	Putative potassium channel protein; RCK domain, E.	86.97
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	86.92
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	86.91
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	86.89
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	86.85
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	86.78
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	86.62
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	86.6
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	86.59
2bry_A	497	NEDD9 interacting protein with calponin homology a	86.59
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	86.52
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	86.47
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	86.45
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	86.43
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	86.23
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	86.22
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	86.16
4ezb_A	317	Uncharacterized conserved protein; structural geno	86.16
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	86.02
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	85.96
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	85.84
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	85.78
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	85.77
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	85.71
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	85.7
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	85.64
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	85.62
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	85.61
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	85.57
3on5_A	362	BH1974 protein; structural genomics, joint center	85.53
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	85.49
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	85.48
2pqm_A	343	Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8	85.48
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	85.37
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	85.37
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	85.23
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	85.18
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	85.16
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	85.03
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	84.94
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	84.9
2v03_A	303	Cysteine synthase B; pyridoxal phosphate, cysteine	84.85
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	84.78
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	84.6
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	84.55
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	84.53
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	84.49
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	84.48
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	84.44
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	84.42
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	84.36
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	84.28
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	84.27
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	84.27
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	84.25
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	84.16
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	84.09
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	84.06
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	84.03
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	83.91
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	83.79
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	83.41
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	83.38
3tbh_A	334	O-acetyl serine sulfhydrylase; cysteine synthase,	83.15
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	83.15
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	83.09
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	83.07
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	83.07
3dwg_A	325	Cysteine synthase B; sulfur carrier protein comple	83.03
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	82.94
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	82.94
1lnq_A	336	MTHK channels, potassium channel related protein;	82.91
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	82.85
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	82.8
1y7l_A	316	O-acetylserine sulfhydrylase, O-acetylserine (thio	82.72
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	82.65
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	82.62
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	82.53
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	82.46
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	82.43
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	82.42
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	82.34
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	82.34
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	82.24
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	82.24
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	82.17
3vc3_A	344	Beta-cyanoalnine synthase; beta-cyanoalanine synth	82.13
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	82.09
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	81.99
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	81.95
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	81.93
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	81.9
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	81.86
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	81.65
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	81.65
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	81.47
1jbq_A	435	B, cystathionine beta-synthase, serine sulfhydrase	81.37
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	81.33
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	81.32
2q3b_A	313	Cysteine synthase A; pyridoxal-5'-phosphate, sulph	81.31
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	81.27
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	81.25
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	81.15
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	81.08
3nx6_A	95	10KDA chaperonin; bacterial blight, XOO4289, groes	81.04
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	81.02
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	81.02
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	80.95
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	80.91
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	80.88
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	80.7
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	80.49
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	80.48
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	80.42
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	80.37
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	80.34
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	80.29
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	80.24
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	80.19
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	80.13
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	80.04
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	80.01

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=3.7e-49  Score=348.80  Aligned_cols=239  Identities=90%  Similarity=1.429  Sum_probs=221.7

Q ss_pred             CCcccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCC
Q 026087            4 EGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT   83 (243)
Q Consensus         4 ~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~   83 (243)
                      .+++++|||+++.+++++++++++|.|+|++|||||||++++||++|++++.|..+...+|.++|||++|+|+++|++++
T Consensus         3 ~~~~~tmkA~v~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~v~   82 (378)
T 3uko_A            3 QGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT   82 (378)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             cccceeeEEEEEecCCCccEEEEecCCCCCCCeEEEEEEEeecCHHHHHHhcCCCCCCCCCccCCccceEEEEEeCCCCC
Confidence            46788999999999998899999999999999999999999999999999999877668899999999999999999999


Q ss_pred             cCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEc
Q 026087           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (243)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l  163 (243)
                      +|++||||++.+..+|++|.+|.+|++++|++.......|....+|...+..+|...++.++.|+|+||++++++.++++
T Consensus        83 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~i  162 (378)
T 3uko_A           83 EVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKI  162 (378)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEEC
T ss_pred             cCCCCCEEEEecCCCCCCChhhhCcCcCcCcCcccccccccccccCccccccCCcccccccCCcceEeEEEechhheEEC
Confidence            99999999999999999999999999999998765444555556677777788888888888899999999999999999


Q ss_pred             CCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      |+++++++|+++.+++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++.
T Consensus       163 P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~  241 (378)
T 3uko_A          163 DPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNE  241 (378)
T ss_dssp             CTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCE
T ss_pred             CCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcE
Confidence            9999999999999999999999888899999999999999999999999999999988999999999999999999974

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=1.4e-47  Score=338.16  Aligned_cols=239  Identities=56%  Similarity=0.959  Sum_probs=207.6

Q ss_pred             CCCCCcccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCC
Q 026087            1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGE   80 (243)
Q Consensus         1 m~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~   80 (243)
                      |++.+.|++|||+++.+++++++++++|.|+|+++||||||++++||++|++++.|.++ ..+|.++|||++|+|+++|+
T Consensus         1 ~~~~~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~   79 (373)
T 1p0f_A            1 MCTAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP-SKFPVILGHEAVGVVESIGA   79 (373)
T ss_dssp             -CCTTSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCCEEEEEEEECT
T ss_pred             CcccCCcceeEEEEEEcCCCCeeEEEeeCCCCCCCeEEEEEeEEeecchhHHHhcCCCC-CCCCcccCcCceEEEEEECC
Confidence            89889999999999999987799999999999999999999999999999999998765 46899999999999999999


Q ss_pred             CCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEecccee
Q 026087           81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV  160 (243)
Q Consensus        81 ~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  160 (243)
                      ++++|++||||++.+..+|++|.+|.+|+++.|++.....+.|+. .+|..++..+|...++....|+|+||+++|++.+
T Consensus        80 ~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~  158 (373)
T 1p0f_A           80 GVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLM-ADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAV  158 (373)
T ss_dssp             TCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSC-TTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSE
T ss_pred             CCCccCCCCEEEECCCCCCCCChhhcCCCcCcCcCCCcccccccc-cCCccccccCCcccccccCCccceeEEEEchhhE
Confidence            999999999999999999999999999999999976432111221 1222222223333333444579999999999999


Q ss_pred             EEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       161 ~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      +++|++++++ ||++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|+
T Consensus       159 ~~iP~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa  237 (373)
T 1p0f_A          159 AKIDPKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA  237 (373)
T ss_dssp             EEECTTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTC
T ss_pred             EECCCCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC
Confidence            9999999999 999999999999988888899999999999999999999999999999789999999999999999998


Q ss_pred             cC
Q 026087          241 MS  242 (243)
Q Consensus       241 ~~  242 (243)
                      +.
T Consensus       238 ~~  239 (373)
T 1p0f_A          238 TE  239 (373)
T ss_dssp             SE
T ss_pred             cE
Confidence            74

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.8e-46  Score=329.87  Aligned_cols=238  Identities=58%  Similarity=1.006  Sum_probs=206.3

Q ss_pred             CCCcccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHH-hhcCCCCCCCCCeeeeeceEEEEEEeCCC
Q 026087            3 TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAY-TWSGKDPEGLFPCILGHEAAGIVESVGEG   81 (243)
Q Consensus         3 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~-~~~g~~~~~~~p~~~G~e~vG~V~~~G~~   81 (243)
                      +..++++|||+++.+++++++++++|.|+|+++||+|||++++||++|++ ++.|.++ ..+|.++|||++|+|+++|++
T Consensus         2 ~~~~~~~mka~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~   80 (374)
T 1cdo_A            2 TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK-DGFPVVLGHEGAGIVESVGPG   80 (374)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT-TSCSEECCCCEEEEEEEECTT
T ss_pred             CCCCcceeEEEEEecCCCCeEEEEeeCCCCCCCEEEEEEeEEeechhhHHHHhCCCCC-CCCCcccCccceEEEEEECCC
Confidence            45678899999999998779999999999999999999999999999999 8988765 468999999999999999999


Q ss_pred             CCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeE
Q 026087           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA  161 (243)
Q Consensus        82 ~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  161 (243)
                      +++|++||||++.+..+|++|.+|.+|+++.|++.....+.|+. .+|..++..+|...++....|+|+||+++|++.++
T Consensus        81 V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~  159 (374)
T 1cdo_A           81 VTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVM-SPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVA  159 (374)
T ss_dssp             CCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTT-SCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEE
T ss_pred             CccCCCCCEEEeCCCCCCCCChhhcCCCcCcCCCcccccccccc-cCCccccccCCcccccccCCccceeEEEEchhheE
Confidence            99999999999999999999999999999999876432111221 12222222233333444445799999999999999


Q ss_pred             EcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       162 ~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      ++|+++++++|+++.+++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|++
T Consensus       160 ~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~  239 (374)
T 1cdo_A          160 KIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT  239 (374)
T ss_dssp             ECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC
T ss_pred             ECCCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCc
Confidence            99999999999999999999999888888999999999999999999999999999997899999999999999999987


Q ss_pred             C
Q 026087          242 S  242 (243)
Q Consensus       242 ~  242 (243)
                      .
T Consensus       240 ~  240 (374)
T 1cdo_A          240 D  240 (374)
T ss_dssp             E
T ss_pred             e
Confidence            3

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=3e-46  Score=329.90  Aligned_cols=237  Identities=54%  Similarity=0.960  Sum_probs=203.7

Q ss_pred             CCcccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCC
Q 026087            4 EGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT   83 (243)
Q Consensus         4 ~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~   83 (243)
                      ...|++|||+++.+++.++++++++.|+|+++||+|||++++||++|++++.|. +..++|.++|||++|+|+++|++++
T Consensus         3 ~~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~-~~~~~P~v~GhE~~G~V~~vG~~v~   81 (376)
T 1e3i_A            3 QGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPK-KKALFPVVLGHECAGIVESVGPGVT   81 (376)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTT-SCCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             CCCChheeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEeEEeEchhhHHHhcCC-CCCCCCcccCccccEEEEEECCCCc
Confidence            457889999999999877999999999999999999999999999999999886 4446899999999999999999999


Q ss_pred             cCCCCCEEeeecccCCCCCccccCCCCCCCCCcc----CCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccce
Q 026087           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR----GATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS  159 (243)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~----~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  159 (243)
                      +|++||||++.+..+|++|.+|.+|+++.|++..    ...+.|.. .+|..++..+|....+....|+|+||+++|++.
T Consensus        82 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~  160 (376)
T 1e3i_A           82 NFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELM-EDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEAN  160 (376)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSC-TTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGG
T ss_pred             cCCCCCEEEECCcCCCCCCccccCCCcccCcCcCcccccccccccc-ccCccccccCCcccccccCCccceeEEEecccc
Confidence            9999999999999999999999999999998754    10001221 122222222233333334457999999999999


Q ss_pred             eEEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhc
Q 026087          160 VAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNAL  239 (243)
Q Consensus       160 ~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~G  239 (243)
                      ++++|+++++++|+++.+++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|
T Consensus       161 ~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG  240 (376)
T 1e3i_A          161 LARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALG  240 (376)
T ss_dssp             EEECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT
T ss_pred             EEECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhC
Confidence            99999999999999999999999998888889999999999999999999999999999978999999999999999999


Q ss_pred             ccC
Q 026087          240 AMS  242 (243)
Q Consensus       240 a~~  242 (243)
                      ++.
T Consensus       241 a~~  243 (376)
T 1e3i_A          241 ATD  243 (376)
T ss_dssp             CSE
T ss_pred             CcE
Confidence            874

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=4.7e-46  Score=328.45  Aligned_cols=237  Identities=55%  Similarity=0.928  Sum_probs=204.5

Q ss_pred             CCcccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCC
Q 026087            4 EGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT   83 (243)
Q Consensus         4 ~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~   83 (243)
                      ...|++|||+++.+++++++++++|.|+|++|||+|||++++||++|++++.|.++. .+|.++|||++|+|+++|++++
T Consensus         3 ~~~~~~mkA~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~P~v~GhE~~G~V~~vG~~v~   81 (374)
T 2jhf_A            3 AGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT-PLPVIAGHEAAGIVESIGEGVT   81 (374)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-CSSBCCCCSEEEEEEEECTTCC
T ss_pred             CCCceeEEEEEEecCCCceEEEEccCCCCCCCeEEEEEeEEeechhhHHHHcCCCCC-CCCcccCcCceEEEEEECCCCC
Confidence            356789999999999877999999999999999999999999999999999987654 3899999999999999999999


Q ss_pred             cCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEc
Q 026087           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (243)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l  163 (243)
                      +|++||||++.+..+|++|.+|.+|++++|++.....+.|+. .+|..++..+|...++.+..|+|+||+++|++.++++
T Consensus        82 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~i  160 (374)
T 2jhf_A           82 TVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKI  160 (374)
T ss_dssp             SCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSC-TTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEEC
T ss_pred             CCCCCCEEEECCCCCCCCCccccCCCcCcCCCCccccccccc-cCCcccccccccccccccCCccCeeEEEEchHHeEEC
Confidence            999999999999999999999999999999976432111221 1222222222333333344579999999999999999


Q ss_pred             CCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      |+++++++|+++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++.
T Consensus       161 P~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~  239 (374)
T 2jhf_A          161 DAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE  239 (374)
T ss_dssp             CTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSE
T ss_pred             CCCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCce
Confidence            9999999999999999999998888889999999999999999999999999999978999999999999999999873

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=1.6e-46  Score=331.24  Aligned_cols=237  Identities=67%  Similarity=1.088  Sum_probs=205.0

Q ss_pred             CcccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCc
Q 026087            5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE   84 (243)
Q Consensus         5 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~   84 (243)
                      +.|++|||+++.++++++++++++.|+|+++||+|||++++||++|++++.|.++...+|.++|||++|+|+++|+++++
T Consensus         2 ~~p~~mkA~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~   81 (373)
T 2fzw_A            2 NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVTK   81 (373)
T ss_dssp             CCCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             CCccceEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEEEEchhhHHHhcCCCCCCCCCccccccccEEEEEECCCCCC
Confidence            45789999999999877999999999999999999999999999999999997665578999999999999999999999


Q ss_pred             CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (243)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp  164 (243)
                      |++||||++.+..+|++|.+|.+|+++.|++.....+.|+. .+|..++..+|...++....|+|+||+++|++.++++|
T Consensus        82 ~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP  160 (373)
T 2fzw_A           82 LKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLM-PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKID  160 (373)
T ss_dssp             CCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCC-TTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECC
T ss_pred             CCCCCEEEECCCCCCCCChHHcCcCcccCCCcccccccccc-cCCcccccccccccccccCCccceeEEEEchhheEECC
Confidence            99999999999999999999999999999875321001211 12222222233333444456799999999999999999


Q ss_pred             CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++++++|+++.+++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|++.
T Consensus       161 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~  238 (373)
T 2fzw_A          161 PLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATE  238 (373)
T ss_dssp             TTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSE
T ss_pred             CCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCce
Confidence            999999999999999999998888889999999999999999999999999999978999999999999999999873

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=5.5e-45  Score=321.28  Aligned_cols=233  Identities=32%  Similarity=0.570  Sum_probs=196.3

Q ss_pred             ccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087            7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (243)
Q Consensus         7 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~   86 (243)
                      +++|||+++.+++.+++++++|.|+|+++||+|||++++||++|++++.|.++ ..+|.++|||++|+|+++|+++++|+
T Consensus         4 ~~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~v~~~~   82 (371)
T 1f8f_A            4 LKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYP-VPLPAVLGHEGSGIIEAIGPNVTELQ   82 (371)
T ss_dssp             CEEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCEEEEEEEEECTTCCSCC
T ss_pred             cccceEEEEcCCCCCeEEEEecCCCCCCCEEEEEEEEeecCchhHHHHcCCCC-CCCCcccCcccceEEEEeCCCCCCCC
Confidence            56899999999887799999999999999999999999999999999998765 35799999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccc-cCCcce-eeecCCcceeeEEEeccceeEEcC
Q 026087           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFS-INGKPI-YHFMGTSTFSQYTVVHDVSVAKID  164 (243)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~-~~~~~~-~~~~~~g~~~~~~~~~~~~~~~lp  164 (243)
                      +||||++.+ .+|++|.+|.+|++++|++.......|.. .+|...+. .+|... .+....|+|+||+++|++.++++|
T Consensus        83 ~GdrV~~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~-~~g~~~~~~~~g~~~~~~~~~~G~~aey~~v~~~~~~~iP  160 (371)
T 1f8f_A           83 VGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGAD-SEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVT  160 (371)
T ss_dssp             TTCEEEECC-CCCSSSHHHHTTCGGGCTTHHHHSSSSSC-SSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEEC
T ss_pred             CCCEEEecC-CCCCCChhhhCcCcccccccccccccccc-ccccccccccCCccccccccCCccccCeEEechhheEECC
Confidence            999999999 99999999999999999875411001100 11110000 001000 011234699999999999999999


Q ss_pred             CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++++++|+++.+++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++.
T Consensus       161 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~  238 (371)
T 1f8f_A          161 KDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATH  238 (371)
T ss_dssp             TTSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSE
T ss_pred             CCCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCE
Confidence            999999999999999999998878889999999999999999999999999999977999999999999999999874

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=1.4e-44  Score=316.06  Aligned_cols=220  Identities=27%  Similarity=0.359  Sum_probs=193.4

Q ss_pred             cceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCC
Q 026087            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (243)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~   87 (243)
                      ++|||+++.++++++++++++.|+|++|||||||++++||++|++++.|.++..++|.++|||++|+|+++|+++++|++
T Consensus         3 m~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~V~~vG~~v~~~~v   82 (348)
T 3two_A            3 VQSKGFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMIPGHEIAGIIKEVGKGVKKFKI   82 (348)
T ss_dssp             EEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTSSSCCCSSBCCCCCEEEEEEEECTTCCSCCT
T ss_pred             eEEEEEEEccCCCCCeEEEeeCCCCCCCeEEEEEEEeeecccchhhhcCCCCCCCCCeecCcceeEEEEEECCCCCCCCC
Confidence            58999999999888999999999999999999999999999999999998776788999999999999999999999999


Q ss_pred             CCEEeeec-ccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087           88 GDHVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (243)
Q Consensus        88 Gd~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  166 (243)
                      ||||++.+ ..+|++|.+|++|++++|. ...   .|+. .+.        .........|+|+||+++|++.++++|++
T Consensus        83 GdrV~~~~~~~~Cg~C~~C~~g~~~~c~-~~~---~~~~-~~~--------~~~~~~~~~G~~aey~~v~~~~~~~iP~~  149 (348)
T 3two_A           83 GDVVGVGCFVNSCKACKPCKEHQEQFCT-KVV---FTYD-CLD--------SFHDNEPHMGGYSNNIVVDENYVISVDKN  149 (348)
T ss_dssp             TCEEEECSEEECCSCSHHHHTTCGGGCT-TCE---ESSS-SEE--------GGGTTEECCCSSBSEEEEEGGGCEECCTT
T ss_pred             CCEEEEeCCcCCCCCChhHhCCCcccCc-ccc---cccc-ccc--------ccccCCcCCccccceEEechhhEEECCCC
Confidence            99998865 4689999999999999998 321   1111 000        00000123359999999999999999999


Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++++|+.+++++.|||+++. ..++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|++.
T Consensus       150 ~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~  223 (348)
T 3two_A          150 APLEKVAPLLCAGITTYSPLK-FSKVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALSMGVKH  223 (348)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHHTTCSE
T ss_pred             CCHHHhhhhhhhHHHHHHHHH-hcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCe
Confidence            999999999999999999774 5589999999999999999999999999999 9999999999999999999974

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.2e-44  Score=317.91  Aligned_cols=214  Identities=30%  Similarity=0.378  Sum_probs=190.7

Q ss_pred             cccceeEEEEecCCCCeEEEeeccCC-CCCCcEEEEEeEEecChhhHHhhcCCCC---CCCCCeeeeeceEEEEEEeCCC
Q 026087            6 QVITCKAAVAWEPNKPLVIEDVQVAP-PQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEG   81 (243)
Q Consensus         6 ~~~~~~a~~~~~~~~~~~~~~~~~p~-~~~~evlVkv~a~~i~~~D~~~~~g~~~---~~~~p~~~G~e~vG~V~~~G~~   81 (243)
                      .+++|||+++.+++.+++++++|.|+ |++|||+|||++++||++|++++.|.++   ...+|.++|||++|+|+++|++
T Consensus        12 ~~~~mka~~~~~~g~~l~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~   91 (359)
T 1h2b_A           12 GVERLKAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEG   91 (359)
T ss_dssp             -----CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTT
T ss_pred             ChhhceEEEEecCCCCcEEEEccCCCCCCCCEEEEEEEEEEecccchHHHhCCCccccCCCCCeecCcCceEEEEEECCC
Confidence            45789999999998679999999999 9999999999999999999999998764   3468999999999999999999


Q ss_pred             CCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeE
Q 026087           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA  161 (243)
Q Consensus        82 ~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  161 (243)
                      +++|++||||+..+..+|++|.+|.+|++++|++...   .|+. .+                  |+|+||+++|++.++
T Consensus        92 v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~-~~------------------G~~aey~~v~~~~~~  149 (359)
T 1h2b_A           92 VEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEF---PGLN-ID------------------GGFAEFMRTSHRSVI  149 (359)
T ss_dssp             CCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBC---BTTT-BC------------------CSSBSEEEECGGGEE
T ss_pred             CCCCCCCCEEEeCCCCCCCCChhhhCcCcccCCCccc---cccC-CC------------------CcccceEEechHhEE
Confidence            9999999999988888999999999999999987643   2322 22                  499999999999999


Q ss_pred             EcCCCCChhhhh---hcccccchhhhhhhhc-CCCCCCCEEEEEcCCHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHH
Q 026087          162 KIDPQAPLDKVC---LLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       162 ~lp~~~~~~~aa---~l~~~~~ta~~~~~~~-~~~~~g~~vlV~G~g~~G~~a~~~a~~~-G~~~vi~~~~~~~~~~~~~  236 (243)
                      ++|+++++++|+   .+.+++.|||+++... .++++|++|||+|+|++|++++|+|+.+ |+ +|++++++++|+++++
T Consensus       150 ~iP~~~~~~~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga-~Vi~~~~~~~~~~~~~  228 (359)
T 1h2b_A          150 KLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPA-TVIALDVKEEKLKLAE  228 (359)
T ss_dssp             ECCTTCCHHHHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCC-EEEEEESSHHHHHHHH
T ss_pred             ECCCCCCHHHHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHH
Confidence            999999999998   7888889999987665 8899999999999999999999999999 99 8999999999999999


Q ss_pred             HhcccC
Q 026087          237 NALAMS  242 (243)
Q Consensus       237 ~~Ga~~  242 (243)
                      ++|++.
T Consensus       229 ~lGa~~  234 (359)
T 1h2b_A          229 RLGADH  234 (359)
T ss_dssp             HTTCSE
T ss_pred             HhCCCE
Confidence            999974

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=2.2e-44  Score=313.87  Aligned_cols=210  Identities=31%  Similarity=0.504  Sum_probs=193.0

Q ss_pred             ceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCCC
Q 026087            9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQP   87 (243)
Q Consensus         9 ~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~~   87 (243)
                      +|||+++.+++.+++++++|.|+|++|||+|||++++||++|++++.|.++. ..+|.++|||++|+|+++|+++++|++
T Consensus         2 ~MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~~v   81 (340)
T 3s2e_A            2 MMKAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGYVSAVGSGVSRVKE   81 (340)
T ss_dssp             EEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECSSCCSCCT
T ss_pred             ceEEEEEecCCCCCEEEEccCCCCCCCeEEEEEEEeccCHHHHHHHcCCCCCCCCCCcccCCcceEEEEEECCCCCcCCC
Confidence            6999999998888999999999999999999999999999999999998764 468999999999999999999999999


Q ss_pred             CCEEe-eecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087           88 GDHVI-PCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (243)
Q Consensus        88 Gd~V~-~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  166 (243)
                      ||||. ..+...|+.|.+|.+|++++|.+...   .|+. .+                  |+|+||+++|++.++++|++
T Consensus        82 GdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~---~g~~-~~------------------G~~aey~~v~~~~~~~iP~~  139 (340)
T 3s2e_A           82 GDRVGVPWLYSACGYCEHCLQGWETLCEKQQN---TGYS-VN------------------GGYGEYVVADPNYVGLLPDK  139 (340)
T ss_dssp             TCEEEEESEEECCSSSHHHHTTCGGGCTTCEE---BTTT-BC------------------CSSBSEEEECTTTSEECCTT
T ss_pred             CCEEEecCCCCCCCCChHHhCcCcccCccccc---cCCC-CC------------------CcceeEEEechHHEEECCCC
Confidence            99994 56788999999999999999997653   2322 23                  49999999999999999999


Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++++|+.+++++.|||+++ ...++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|++.
T Consensus       140 ~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~  213 (340)
T 3s2e_A          140 VGFVEIAPILCAGVTVYKGL-KVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGAEV  213 (340)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HTTTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSE
T ss_pred             CCHHHhhcccchhHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCCE
Confidence            99999999999999999987 67789999999999999999999999999999 9999999999999999999874

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=1.2e-43  Score=312.87  Aligned_cols=211  Identities=25%  Similarity=0.386  Sum_probs=192.4

Q ss_pred             cccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcC
Q 026087            6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV   85 (243)
Q Consensus         6 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~   85 (243)
                      .+.+|||+++.+++. ++++++|.|+|++|||+|||++++||++|++++.|.++ ..+|.++|||++|+|+++|+++++|
T Consensus        20 ~p~~mkA~v~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~-~~~p~v~G~e~~G~V~~vG~~v~~~   97 (370)
T 4ej6_A           20 FQSMMKAVRLESVGN-ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFP-STPPVTLGHEFCGIVVEAGSAVRDI   97 (370)
T ss_dssp             -CCEEEEEEEEETTE-EEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSEECCCSEEEEEEEECTTCCSS
T ss_pred             cchheEEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEEeecHHHHHHHcCCCC-CCCCeecCcceEEEEEEECCCCCCC
Confidence            457899999999875 99999999999999999999999999999999999864 4689999999999999999999999


Q ss_pred             CCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCC
Q 026087           86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (243)
Q Consensus        86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~  165 (243)
                      ++||||++.+...|+.|.+|.+|+++.|.+...   +|.. .                  .|+|+||+++|++.++++|+
T Consensus        98 ~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~-~------------------~G~~aey~~v~~~~~~~~P~  155 (370)
T 4ej6_A           98 APGARITGDPNISCGRCPQCQAGRVNLCRNLRA---IGIH-R------------------DGGFAEYVLVPRKQAFEIPL  155 (370)
T ss_dssp             CTTCEEEECCEECCSSSHHHHTTCGGGCTTCEE---BTTT-B------------------CCSSBSEEEEEGGGEEEECT
T ss_pred             CCCCEEEECCCCCCCCChHHhCcCcccCCCccc---cCCC-C------------------CCcceEEEEEchhhEEECCC
Confidence            999999999999999999999999999997653   2322 2                  34999999999999999999


Q ss_pred             CCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++++++|+ +..++.|+|+++ +..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++.
T Consensus       156 ~~~~~~aa-l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~  230 (370)
T 4ej6_A          156 TLDPVHGA-FCEPLACCLHGV-DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATA  230 (370)
T ss_dssp             TSCTTGGG-GHHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSE
T ss_pred             CCCHHHHh-hhhHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCE
Confidence            99999998 556889999977 7888999999999999999999999999999988999999999999999999974

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=2e-43  Score=310.17  Aligned_cols=219  Identities=22%  Similarity=0.276  Sum_probs=191.3

Q ss_pred             cccceeEEEEecCCCCeEEEe--eccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCC
Q 026087            6 QVITCKAAVAWEPNKPLVIED--VQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT   83 (243)
Q Consensus         6 ~~~~~~a~~~~~~~~~~~~~~--~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~   83 (243)
                      .+.+|||+++.+++.++++++  +|.|+|++|||||||++++||++|++++.|.++..++|.++|||++|+|+++|++++
T Consensus         3 ~p~~mka~~~~~~~~~l~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~GhE~~G~V~~vG~~v~   82 (360)
T 1piw_A            3 YPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKSN   82 (360)
T ss_dssp             TTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECTTCC
T ss_pred             CChheEEEEEecCCCCeeEEeccccCCCCCCCeEEEEEEEeccchhhHHHhcCCCCCCCCCcccCcCceEEEEEeCCCCC
Confidence            456899999999886689999  999999999999999999999999999998766557899999999999999999999


Q ss_pred             -cCCCCCEEeeec-ccCCCCCccccCCCCCCCCCc-cCCCCCceecCCCccccccCCcceeeecCCcceeeEEEecccee
Q 026087           84 -EVQPGDHVIPCY-QAECRECKFCKSGKTNLCGKV-RGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV  160 (243)
Q Consensus        84 -~~~~Gd~V~~~~-~~~~~~c~~c~~~~~~~c~~~-~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  160 (243)
                       +|++||||++.+ ..+|++|.+|.+|++++|++. ...  .+.. ..|             ....|+|+||+++|++.+
T Consensus        83 ~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~--~~~~-~~g-------------~~~~G~~aey~~v~~~~~  146 (360)
T 1piw_A           83 SGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTY--SQPY-EDG-------------YVSQGGYANYVRVHEHFV  146 (360)
T ss_dssp             SSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESS--SCBC-TTS-------------CBCCCSSBSEEEEEGGGE
T ss_pred             CCCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhcc--cccc-CCC-------------ccCCCcceeEEEEchhhe
Confidence             999999996654 568999999999999999875 110  0000 001             112349999999999999


Q ss_pred             EEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       161 ~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      +++|+++++++|+++++++.|||+++.. .++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|+
T Consensus       147 ~~iP~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~lGa  224 (360)
T 1piw_A          147 VPIPENIPSHLAAPLLCGGLTVYSPLVR-NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGA  224 (360)
T ss_dssp             EECCTTSCHHHHGGGGTHHHHHHHHHHH-TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTC
T ss_pred             EECCCCCCHHHhhhhhhhHHHHHHHHHH-cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCC
Confidence            9999999999999999999999998755 789999999999999999999999999999 89999999999999999998


Q ss_pred             cC
Q 026087          241 MS  242 (243)
Q Consensus       241 ~~  242 (243)
                      +.
T Consensus       225 ~~  226 (360)
T 1piw_A          225 DH  226 (360)
T ss_dssp             SE
T ss_pred             CE
Confidence            74

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=3.5e-43  Score=307.29  Aligned_cols=211  Identities=28%  Similarity=0.364  Sum_probs=177.5

Q ss_pred             ccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcC-CCC--CCCCCeeeeeceEEEEEEeCCCCC
Q 026087            7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG-KDP--EGLFPCILGHEAAGIVESVGEGVT   83 (243)
Q Consensus         7 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g-~~~--~~~~p~~~G~e~vG~V~~~G~~~~   83 (243)
                      |++|||+++.+++..++++++|.|+|++|||+|||++++||++|++++.| .++  ..++|.++|||++|+|+++|++++
T Consensus         2 m~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~   81 (348)
T 2d8a_A            2 SEKMVAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVE   81 (348)
T ss_dssp             -CEEEEEEECSSSSSCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCTTHHHHCCSSEECCCEEEEEEEEECTTCC
T ss_pred             CCcceEEEEECCCCCEEEEECCCCCCCcCEEEEEEeEEEecHHHHHHHcCCCCCcccCCCCCccCccceEEEEEECCCCC
Confidence            34799999999885599999999999999999999999999999999998 432  236789999999999999999999


Q ss_pred             cCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEc
Q 026087           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (243)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l  163 (243)
                      +|++||||++.+..+|++|.+|.+|++++|++...   +|.. .+                  |+|+||+++|++.++++
T Consensus        82 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~-~~------------------G~~aey~~v~~~~~~~i  139 (348)
T 2d8a_A           82 GIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKI---FGVD-TD------------------GVFAEYAVVPAQNIWKN  139 (348)
T ss_dssp             SCCTTCEEEECCEECCSCCC------------CEE---TTTS-SC------------------CSSBSEEEEEGGGEEEC
T ss_pred             cCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCe---ecCC-CC------------------CcCcceEEeChHHeEEC
Confidence            99999999999999999999999999999987643   2322 22                  49999999999999999


Q ss_pred             CCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      |+++++++|+++. ++.|||+++ +..++ +|++|||+|+|.+|++++|+|+.+|+.+|++++++++|+++++++|++.
T Consensus       140 P~~~~~~~aa~~~-~~~ta~~~l-~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~  215 (348)
T 2d8a_A          140 PKSIPPEYATLQE-PLGNAVDTV-LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADY  215 (348)
T ss_dssp             CTTSCHHHHTTHH-HHHHHHHHH-TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSE
T ss_pred             CCCCCHHHHHhhh-HHHHHHHHH-HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE
Confidence            9999999999875 778999987 67788 9999999999999999999999999977999999999999999999863

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=3.2e-43  Score=309.12  Aligned_cols=214  Identities=25%  Similarity=0.324  Sum_probs=188.1

Q ss_pred             CCCCCcccceeEEEEecCCCCeEEEeeccC--------CCCCCcEEEEEeEEecChhhHHhhcCCC---CCCCCCeeeee
Q 026087            1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVA--------PPQAGEVRIKILFTALCHTDAYTWSGKD---PEGLFPCILGH   69 (243)
Q Consensus         1 m~~~~~~~~~~a~~~~~~~~~~~~~~~~~p--------~~~~~evlVkv~a~~i~~~D~~~~~g~~---~~~~~p~~~G~   69 (243)
                      |++ +.+++|||+++.+++. ++++++|.|        +|++|||||||++++||++|++++.+..   ...++|.++||
T Consensus         1 m~~-~~~~~mka~~~~~~~~-l~~~~~~~P~~~~~~~~~~~~~eVlVkv~a~gi~~~D~~~~~~~~~~~~~~~~p~v~G~   78 (363)
T 3m6i_A            1 MAS-SASKTNIGVFTNPQHD-LWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGH   78 (363)
T ss_dssp             -----CCSCCEEEEECTTCC-EEEEECSSCHHHHHHTCSCCTTEEEEEEEEEECCHHHHHHHHHSBSSSCBCCSCEECCC
T ss_pred             CCC-CCcccceeEEEeCCCc-EEEEEecCCccccccCCCcCCCeEEEEEeEEeecHhhHHHHcCCCCCCccCCCCcccCc
Confidence            554 3668999999998876 999999999        9999999999999999999999987432   12367999999


Q ss_pred             ceEEEEEEeCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcce
Q 026087           70 EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTF  149 (243)
Q Consensus        70 e~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~  149 (243)
                      |++|+|+++|+++++|++||||++.+..+|++|.+|.+|+++.|++....   |....+                  |+|
T Consensus        79 E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~---g~~~~~------------------G~~  137 (363)
T 3m6i_A           79 ESAGEVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDFL---STPPVP------------------GLL  137 (363)
T ss_dssp             EEEEEEEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEET---TSTTSC------------------CSC
T ss_pred             ceEEEEEEECCCCCCCCCCCEEEEecccCCCCCHHHHCcCcccCCCcccc---CCCCCC------------------ccc
Confidence            99999999999999999999999999999999999999999999986542   222123                  499


Q ss_pred             eeEEEeccceeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          150 SQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       150 ~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      +||+++|++.++++|+ +++++|+++. ++.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+++|+++++++
T Consensus       138 aey~~v~~~~~~~iP~-~s~~~aa~~~-~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~  214 (363)
T 3m6i_A          138 RRYVNHPAVWCHKIGN-MSYENGAMLE-PLSVALAGL-QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDE  214 (363)
T ss_dssp             BSEEEEEGGGEEECTT-CCHHHHHHHH-HHHHHHHHH-HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCH
T ss_pred             eeEEEEehhhEEECCC-CCHHHHHhhh-HHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            9999999999999999 9999999884 788999987 788899999999999999999999999999996699999999


Q ss_pred             hHHHHHHHhccc
Q 026087          230 KKFDRVLNALAM  241 (243)
Q Consensus       230 ~~~~~~~~~Ga~  241 (243)
                      +|+++++++ ++
T Consensus       215 ~~~~~a~~l-~~  225 (363)
T 3m6i_A          215 GRLKFAKEI-CP  225 (363)
T ss_dssp             HHHHHHHHH-CT
T ss_pred             HHHHHHHHh-ch
Confidence            999999998 53

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=4.2e-43  Score=307.19  Aligned_cols=211  Identities=24%  Similarity=0.333  Sum_probs=190.7

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHH-hhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAY-TWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~-~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G   88 (243)
                      |||+++.++++ ++++|+|.|+|++|||+|||++++||++|++ ++.|..+. ++|.++|||++|+|+++|+++++|++|
T Consensus         1 MkA~~~~~~~~-~~~~e~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~-~~p~v~G~E~~G~V~~vG~~v~~~~vG   78 (352)
T 3fpc_A            1 MKGFAMLSIGK-VGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGE-RHNMILGHEAVGEVVEVGSEVKDFKPG   78 (352)
T ss_dssp             CEEEEEEETTE-EEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTCC-CSSEECCCEEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEccCCC-ceEEeCCCCCCCCCeEEEEeCEEeEcccchHHHhCCCCCC-CCCcccCCcceEEEEEECCCCCcCCCC
Confidence            79999999988 8999999999999999999999999999999 55776654 679999999999999999999999999


Q ss_pred             CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc--eeEEcCCC
Q 026087           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ  166 (243)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~lp~~  166 (243)
                      |||++.+..+|+.|.+|.+|+.++|.....+..+|.. .                  .|+|+||+.+|..  .++++|++
T Consensus        79 drV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~~-~------------------~G~~aey~~v~~~~~~~~~iP~~  139 (352)
T 3fpc_A           79 DRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNV-K------------------DGVFGEFFHVNDADMNLAHLPKE  139 (352)
T ss_dssp             CEEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTTT-B------------------CCSSBSCEEESSHHHHCEECCTT
T ss_pred             CEEEEccccCCCCchhhcCCCcCCccccccccccccC-C------------------CCcccceEEeccccCeEEECCCC
Confidence            9999999999999999999999999765433222222 2                  3499999999975  89999999


Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++++|++++.++.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++.
T Consensus       140 ~~~~~aa~~~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~  214 (352)
T 3fpc_A          140 IPLEAAVMIPDMMTTGFHGA-ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATD  214 (352)
T ss_dssp             SCHHHHTTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCE
T ss_pred             CCHHHHhhccchhHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCce
Confidence            99999999988999999986 7889999999999999999999999999999978999999999999999999974

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=3.3e-43  Score=308.38  Aligned_cols=212  Identities=25%  Similarity=0.361  Sum_probs=188.8

Q ss_pred             ccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCC-C--CCCCCeeeeeceEEEEEEeCCCCC
Q 026087            7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-P--EGLFPCILGHEAAGIVESVGEGVT   83 (243)
Q Consensus         7 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~-~--~~~~p~~~G~e~vG~V~~~G~~~~   83 (243)
                      +++|||+++.+++. +++++++.|+|++|||+|||++++||++|++++.+.. .  ..++|.++|||++|+|+++|++++
T Consensus         5 ~~~mka~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~V~   83 (356)
T 1pl8_A            5 KPNNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVK   83 (356)
T ss_dssp             CCCCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCC
T ss_pred             ccCceEEEEecCCc-EEEEEccCCCCCCCeEEEEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEECCCCC
Confidence            46899999999865 9999999999999999999999999999999987432 1  125789999999999999999999


Q ss_pred             cCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEc
Q 026087           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (243)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l  163 (243)
                      +|++||||++.+..+|++|.+|.+|++++|++...   .|....+                  |+|+||+++|++.++++
T Consensus        84 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~------------------G~~aey~~v~~~~~~~i  142 (356)
T 1pl8_A           84 HLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFF---CATPPDD------------------GNLCRFYKHNAAFCYKL  142 (356)
T ss_dssp             SCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEE---TTBTTBC------------------CSCBSEEEEEGGGEEEC
T ss_pred             CCCCCCEEEEeccCCCCCChHHHCcCcccCCCccc---cCcCCCC------------------CccccEEEeehHHEEEC
Confidence            99999999999999999999999999999987643   2321122                  49999999999999999


Q ss_pred             CCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      |+++++++|+++ .++.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++.
T Consensus       143 P~~l~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~  219 (356)
T 1pl8_A          143 PDNVTFEEGALI-EPLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADL  219 (356)
T ss_dssp             CTTSCHHHHHHH-HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSE
T ss_pred             cCCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE
Confidence            999999998876 4778999987 7788999999999999999999999999999988999999999999999999863

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=1.1e-42  Score=303.62  Aligned_cols=213  Identities=27%  Similarity=0.392  Sum_probs=189.8

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC--CCCCeeeeeceEEEEEEeCCCCCcCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE--GLFPCILGHEAAGIVESVGEGVTEVQP   87 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~--~~~p~~~G~e~vG~V~~~G~~~~~~~~   87 (243)
                      |||+++.+++++++++++|.|+|++|||||||++++||++|++++.|.++.  .++|.++|||++|+|+++|+++++|++
T Consensus         1 MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~v   80 (345)
T 3jv7_A            1 MKAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGFGV   80 (345)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTTCCSCSSEECCSEEEEEEEEECTTCCSCCT
T ss_pred             CeEEEEcCCCCceEEEEecCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCccCCCCCcccCcccEEEEEEECCCCCCCCC
Confidence            799999999988999999999999999999999999999999999987542  468999999999999999999999999


Q ss_pred             CCEEeeecccCCCCCccccCCCCCCCCCc-cCC-CCCceecCCCccccccCCcceeeecCCcceeeEEEec-cceeEEcC
Q 026087           88 GDHVIPCYQAECRECKFCKSGKTNLCGKV-RGA-TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH-DVSVAKID  164 (243)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~-~~~-~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~lp  164 (243)
                      ||||++.+...|+.|.+|.++++++|... ..+ ...|.                   ...|+|+||+++| .+.++++|
T Consensus        81 GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~-------------------~~~G~~aey~~v~~~~~~~~~p  141 (345)
T 3jv7_A           81 GDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGL-------------------GSPGSMAEYMIVDSARHLVPIG  141 (345)
T ss_dssp             TCEEEECCSCCCSSSHHHHTTCGGGCSSHHHHTCCCBTT-------------------TBCCSSBSEEEESCGGGEEECT
T ss_pred             CCEEEEecCCCCCCChHHHCcCcCcCccccccccccCCc-------------------CCCceeeEEEEecchhceEeCC
Confidence            99999999999999999999999999432 210 00111                   1234999999999 89999999


Q ss_pred             CCCChhhhhhcccccchhhhhhhh-cCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          165 PQAPLDKVCLLGCGVPTGLGAVWN-TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~-~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      + +++++|+.+++++.|||+++.+ ...+++|++|||+|+|++|++++|+|+.+|..+|++++++++|+++++++|++.
T Consensus       142 ~-~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~  219 (345)
T 3jv7_A          142 D-LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADA  219 (345)
T ss_dssp             T-CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSE
T ss_pred             C-CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCE
Confidence            9 9999999999999999998876 458999999999999999999999999995449999999999999999999974

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=8.1e-43  Score=304.53  Aligned_cols=209  Identities=31%  Similarity=0.451  Sum_probs=184.8

Q ss_pred             cceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC--CCCCCeeeeeceEEEEEEeCCCCCcC
Q 026087            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP--EGLFPCILGHEAAGIVESVGEGVTEV   85 (243)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~--~~~~p~~~G~e~vG~V~~~G~~~~~~   85 (243)
                      .+|||+++.+++.+++++++|.|+|+++||+|||++++||++|++++.|.++  ...+|.++|||++|+|+++|++ ++|
T Consensus         2 ~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~E~~G~V~~vG~~-~~~   80 (344)
T 2h6e_A            2 VKSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGEL-AKV   80 (344)
T ss_dssp             EEEEBCEECSCCC-----EEEECCCCTTCEEEEEEEEECCHHHHHHHTTSCCCTTCCSSEECCCCEEEEEEEECTT-CCC
T ss_pred             ceeEEEEEecCCCCCeEEEeeCCCCCCCEEEEEEEEEEechhhHHHHcCCCcccCCCCCccccccceEEEEEECCC-CCC
Confidence            3799999999986799999999999999999999999999999999998765  3468999999999999999999 999


Q ss_pred             CCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEec-cceeEEcC
Q 026087           86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH-DVSVAKID  164 (243)
Q Consensus        86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~lp  164 (243)
                      ++||||+..+..+|++|.+|.+|++++|++...   +|.. .+                  |+|+||+++| ++.++++ 
T Consensus        81 ~~GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~-~~------------------G~~aey~~v~~~~~~~~i-  137 (344)
T 2h6e_A           81 KKGDNVVVYATWGDLTCRYCREGKFNICKNQII---PGQT-TN------------------GGFSEYMLVKSSRWLVKL-  137 (344)
T ss_dssp             CTTCEEEECSCBCCSCSTTGGGTCGGGCTTCBC---BTTT-BC------------------CSSBSEEEESCGGGEEEE-
T ss_pred             CCCCEEEECCCCCCCCChhhhCCCcccCCCccc---cccc-cC------------------CcceeeEEecCcccEEEe-
Confidence            999999888888999999999999999987632   2322 22                  4999999999 9999999 


Q ss_pred             CCCChhhhhhcccccchhhhhhhhc----CCCCCCCEEEEEcCCHHHHHHHHHHHHc--CCCEEEEEcCChhHHHHHHHh
Q 026087          165 PQAPLDKVCLLGCGVPTGLGAVWNT----AKVEPGSIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~----~~~~~g~~vlV~G~g~~G~~a~~~a~~~--G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      +++++++|+.+++++.|||+++...    .++ +|++|||+|+|++|++++|+|+.+  |+ +|++++++++|+++++++
T Consensus       138 ~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~l  215 (344)
T 2h6e_A          138 NSLSPVEAAPLADAGTTSMGAIRQALPFISKF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALEL  215 (344)
T ss_dssp             SSSCHHHHGGGGTHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHHH
T ss_pred             CCCCHHHhhhhhhhhHHHHHHHHhhhhcccCC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHHh
Confidence            9999999999999999999987654    278 999999999999999999999999  99 899999999999999999


Q ss_pred             cccC
Q 026087          239 LAMS  242 (243)
Q Consensus       239 Ga~~  242 (243)
                      |++.
T Consensus       216 Ga~~  219 (344)
T 2h6e_A          216 GADY  219 (344)
T ss_dssp             TCSE
T ss_pred             CCCE
Confidence            9874

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.1e-42  Score=304.49  Aligned_cols=210  Identities=29%  Similarity=0.457  Sum_probs=186.5

Q ss_pred             cceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcC-CCC--CCCCCeeeeeceEEEEEEeCCCCCc
Q 026087            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG-KDP--EGLFPCILGHEAAGIVESVGEGVTE   84 (243)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g-~~~--~~~~p~~~G~e~vG~V~~~G~~~~~   84 (243)
                      ++|||+++.+++. ++++++|.|+|+++||+|||++++||++|++++.+ ...  ..++|.++|||++|+|+++|+++++
T Consensus         3 ~~mka~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~   81 (352)
T 1e3j_A            3 SDNLSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKH   81 (352)
T ss_dssp             -CCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCS
T ss_pred             ccCEEEEEEcCCc-EEEEEecCCCCCCCeEEEEEEEEEEChhhHHHHcCCCCccccCCCCccccccceEEEEEeCCCCCC
Confidence            3699999999875 99999999999999999999999999999998874 322  1257899999999999999999999


Q ss_pred             CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (243)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp  164 (243)
                      |++||||++.+..+|+.|.+|.+|+++.|++...   .|....+                  |+|+||+++|++.++++|
T Consensus        82 ~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~------------------G~~aey~~v~~~~~~~iP  140 (352)
T 1e3j_A           82 LKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTF---CATPPDD------------------GNLARYYVHAADFCHKLP  140 (352)
T ss_dssp             CCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEE---TTBTTBC------------------CSCBSEEEEEGGGEEECC
T ss_pred             CCCCCEEEEcCcCCCCCChhhhCcCcccCCCCcc---cCcCCCC------------------ccceeEEEeChHHeEECc
Confidence            9999999999999999999999999999987643   2321122                  499999999999999999


Q ss_pred             CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++++++|+++ .++.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|++.
T Consensus       141 ~~~~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~  215 (352)
T 1e3j_A          141 DNVSLEEGALL-EPLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADV  215 (352)
T ss_dssp             TTSCHHHHHTH-HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSE
T ss_pred             CCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCE
Confidence            99999998876 4778999987 77889999999999999999999999999999 7999999999999999999863

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.5e-42  Score=304.32  Aligned_cols=221  Identities=27%  Similarity=0.418  Sum_probs=189.5

Q ss_pred             cccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcC
Q 026087            6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV   85 (243)
Q Consensus         6 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~   85 (243)
                      ..++|+++++.++++.++++++|.|+|++|||+|||++++||++|++++.|.++...+|.++|||++|+|+++|+++++|
T Consensus        19 ~~~~~~a~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~~   98 (369)
T 1uuf_A           19 AGLKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKY   98 (369)
T ss_dssp             ----CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEECTTCCSC
T ss_pred             cCceEEEEEEcCCCCCcEEEEecCCCCCCCeEEEEEEEEeecHHHHHHhcCCCCCCCCCeecccCceEEEEEECCCCCCC
Confidence            44789999998887779999999999999999999999999999999999876555689999999999999999999999


Q ss_pred             CCCCEEeeeccc-CCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087           86 QPGDHVIPCYQA-ECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (243)
Q Consensus        86 ~~Gd~V~~~~~~-~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp  164 (243)
                      ++||||++.+.. .|++|.+|.+|++++|++..... .+.....|             ....|+|+||+++|.+.++++|
T Consensus        99 ~vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~-~~~~~~~g-------------~~~~G~~aeyv~v~~~~~~~~P  164 (369)
T 1uuf_A           99 APGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTY-NSPTPDEP-------------GHTLGGYSQQIVVHERYVLRIR  164 (369)
T ss_dssp             CTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETT-TSBCSSTT-------------SBCCCSSBSEEEEEGGGCEECC
T ss_pred             CCCCEEEEccCCCCCCCCcccCCCCcccCcchhccc-ccccccCC-------------CCCCCcccceEEEcchhEEECC
Confidence            999999987754 69999999999999998752110 00000000             1123499999999999999999


Q ss_pred             CC-CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          165 PQ-APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       165 ~~-~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++ +++++|+++++++.|||+++.. .++++|++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|++.
T Consensus       165 ~~~ls~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~lGa~~  241 (369)
T 1uuf_A          165 HPQEQLAAVAPLLCAGITTYSPLRH-WQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADE  241 (369)
T ss_dssp             SCGGGHHHHGGGGTHHHHHHHHHHH-TTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSE
T ss_pred             CCCCCHHHhhhhhhhHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCcE
Confidence            99 9999999999999999998755 589999999999999999999999999999 7999999999999999999874

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=2.7e-42  Score=301.09  Aligned_cols=207  Identities=28%  Similarity=0.439  Sum_probs=186.1

Q ss_pred             eeEEEEecCCCCeEEEeeccCC-CCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAP-PQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~-~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G   88 (243)
                      |||+++.+++. ++++|+|.|+ ++||||||||++++||++|++.+.+..+. ++|.++|||++|+|+++|+++++|++|
T Consensus         1 MkAvv~~~~g~-l~v~e~p~P~~~~~~eVlVkv~a~gi~~sD~~~~~g~~~~-~~P~i~G~E~~G~V~~vG~~V~~~~~G   78 (346)
T 4a2c_A            1 MKSVVNDTDGI-VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGAH-YYPITLGHEFSGYIDAVGSGVDDLHPG   78 (346)
T ss_dssp             CEEEEECSSSC-EEEEECCCCCCCSTTEEEEEEEEEECCTTHHHHHHSSCSS-SSSBCCCCEEEEEEEEECTTCCSCCTT
T ss_pred             CCEEEEecCCC-EEEEEEeCCCCCCcCEEEEEEEEEEECHHHHHHHcCCCCC-CCCccccEEEEEEEEEECCCcccccCC
Confidence            89999999987 9999999998 57999999999999999999999887554 689999999999999999999999999


Q ss_pred             CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCC
Q 026087           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (243)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~  168 (243)
                      |+|.+.+...|+.|.+|..|+.+.|.+...   .|.. .+                  |+|+||+++|++.++++|++++
T Consensus        79 drV~~~~~~~~g~c~~c~~g~~~~c~~~~~---~g~~-~~------------------G~~aey~~v~~~~~~~iP~~l~  136 (346)
T 4a2c_A           79 DAVACVPLLPCFTCPECLKGFYSQCAKYDF---IGSR-RD------------------GGFAEYIVVKRKNVFALPTDMP  136 (346)
T ss_dssp             CEEEECCEECCSCSHHHHTTCGGGCSSCEE---BTTT-BC------------------CSSBSEEEEEGGGEEECCTTSC
T ss_pred             CeEEeeeccCCCCcccccCCccccCCCccc---ccCC-CC------------------cccccccccchheEEECCCCCC
Confidence            999999999999999999999999987654   2322 23                  4999999999999999999999


Q ss_pred             hhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++||++. .+.++++ .....++++|++|||+|+|++|++++|+|+++|+..+++++++++|+++++++||+.
T Consensus       137 ~~~aa~l~-~~~~~~~-~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~  208 (346)
T 4a2c_A          137 IEDGAFIE-PITVGLH-AFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQ  208 (346)
T ss_dssp             GGGGGGHH-HHHHHHH-HHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSE
T ss_pred             HHHHHhch-HHHHHHH-HHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeE
Confidence            99999875 3344444 668888999999999999999999999999999978899999999999999999974

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=2.9e-42  Score=300.50  Aligned_cols=209  Identities=33%  Similarity=0.499  Sum_probs=188.2

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQPG   88 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~~G   88 (243)
                      |||+++.+++.+++++++|.|+|++|||+|||++++||++|++++.|.++. ..+|.++|||++|+|+++|+++++|++|
T Consensus         1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~GhE~~G~V~~vG~~v~~~~vG   80 (339)
T 1rjw_A            1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVG   80 (339)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEeEchhhHHHhcCCCCcCCCCCeeccccceEEEEEECCCCCcCCCC
Confidence            789999999866999999999999999999999999999999999987652 3679999999999999999999999999


Q ss_pred             CEEeeeccc-CCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCC
Q 026087           89 DHVIPCYQA-ECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (243)
Q Consensus        89 d~V~~~~~~-~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~  167 (243)
                      |||++.+.. .|++|.+|.+|++++|++...   .|.. .+                  |+|+||+++|++.++++|+++
T Consensus        81 drV~~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~-~~------------------G~~aey~~v~~~~~~~~P~~~  138 (339)
T 1rjw_A           81 DRVGIPWLYSACGHCDYCLSGQETLCEHQKN---AGYS-VD------------------GGYAEYCRAAADYVVKIPDNL  138 (339)
T ss_dssp             CEEEECSEEECCSCSHHHHTTCGGGCTTCEE---BTTT-BC------------------CSSBSEEEEEGGGCEECCTTS
T ss_pred             CEEEEecCCCCCCCCchhhCcCcccCCCcce---eecC-CC------------------CcceeeEEechHHEEECCCCC
Confidence            999987644 599999999999999987643   2221 23                  499999999999999999999


Q ss_pred             ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++++|+++++++.|||+++... ++++|++|||+|+|++|++++|+++.+|+ +|++++++++++++++++|++.
T Consensus       139 ~~~~aa~l~~~~~ta~~~l~~~-~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~  211 (339)
T 1rjw_A          139 SFEEAAPIFCAGVTTYKALKVT-GAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADL  211 (339)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHHH-TCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSE
T ss_pred             CHHHhhhhhhhHHHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCE
Confidence            9999999999999999987554 89999999999998899999999999999 9999999999999999999863

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=5.2e-42  Score=300.93  Aligned_cols=221  Identities=25%  Similarity=0.287  Sum_probs=190.7

Q ss_pred             CcccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCc
Q 026087            5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE   84 (243)
Q Consensus         5 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~   84 (243)
                      ..+|+|+++++.++.+.++++++|.|+|++|||+|||++++||++|++++.|.++...+|.++|||++|+|+++|+++++
T Consensus         5 ~~~m~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~v~~   84 (357)
T 2cf5_A            5 EAERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYPMVPGHEVVGEVVEVGSDVSK   84 (357)
T ss_dssp             -CCCEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHTCTTTCCCSSBCCCCEEEEEEEEECSSCCS
T ss_pred             cCcceeEEEEEccCCCCcEEEEecCCCCCCCEEEEEEEEEeecchhhhhhcCCCCCCCCCeecCcceeEEEEEECCCCCC
Confidence            35678999998887777999999999999999999999999999999999987655568999999999999999999999


Q ss_pred             CCCCCEEeeecc-cCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEc
Q 026087           85 VQPGDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (243)
Q Consensus        85 ~~~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l  163 (243)
                      |++||||++.+. .+|++|.+|.+|++++|+...... .+.. ..|             ....|+|+||+++|++.++++
T Consensus        85 ~~vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~-~~~~-~~g-------------~~~~G~~aey~~v~~~~~~~~  149 (357)
T 2cf5_A           85 FTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSY-NDVY-ING-------------QPTQGGFAKATVVHQKFVVKI  149 (357)
T ss_dssp             CCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETT-TSBC-TTS-------------CBCCCSSBSCEEEEGGGEEEC
T ss_pred             CCCCCEEEEcCCCCCCCCChHHhCcCcccCCCccccc-cccc-cCC-------------CCCCCccccEEEechhhEEEC
Confidence            999999987653 579999999999999996543211 1100 011             112459999999999999999


Q ss_pred             CCCCChhhhhhcccccchhhhhhhhcCCCC-CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-Hhccc
Q 026087          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVE-PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL-NALAM  241 (243)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~-~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~-~~Ga~  241 (243)
                      |+++++++|+++++++.|||+++. ..+++ +|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++ ++|++
T Consensus       150 P~~ls~~~aa~l~~~~~ta~~~l~-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~~lGa~  227 (357)
T 2cf5_A          150 PEGMAVEQAAPLLCAGVTVYSPLS-HFGLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQDLGAD  227 (357)
T ss_dssp             CSSCCHHHHTGGGTHHHHHHHHHH-HTSTTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHTTSCCS
T ss_pred             cCCCCHHHhhhhhhhHHHHHHHHH-hcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHcCCc
Confidence            999999999999999999999764 46777 99999999999999999999999999 8999999999999988 99987


Q ss_pred             C
Q 026087          242 S  242 (243)
Q Consensus       242 ~  242 (243)
                      .
T Consensus       228 ~  228 (357)
T 2cf5_A          228 D  228 (357)
T ss_dssp             C
T ss_pred             e
Confidence            4

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.2e-42  Score=298.82  Aligned_cols=212  Identities=30%  Similarity=0.456  Sum_probs=190.0

Q ss_pred             cccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCc
Q 026087            6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTE   84 (243)
Q Consensus         6 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~   84 (243)
                      .|.+|||+++.+++.+++++++|.|+|++|||+|||++++||++|++++.|.++. ..+|.++|||++|+|+++|+++++
T Consensus         2 ~p~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~   81 (347)
T 2hcy_A            2 IPETQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENVKG   81 (347)
T ss_dssp             CCSEEEEEEESSTTCCCEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSEECCCEEEEEEEEECTTCCS
T ss_pred             CCcccEEEEEeCCCCCCEEEEeeCCCCCCCEEEEEEEEEEechhHHHHhcCCCCCCCCCCcccCccceEEEEEECCCCCC
Confidence            3568999999999866999999999999999999999999999999999987652 368999999999999999999999


Q ss_pred             CCCCCEEeeeccc-CCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEc
Q 026087           85 VQPGDHVIPCYQA-ECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (243)
Q Consensus        85 ~~~Gd~V~~~~~~-~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l  163 (243)
                      |++||||++.+.. .|+.|.+|.+|++++|++...   .|.. .+                  |+|+||+++|++.++++
T Consensus        82 ~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~-~~------------------G~~aey~~v~~~~~~~i  139 (347)
T 2hcy_A           82 WKIGDYAGIKWLNGSCMACEYCELGNESNCPHADL---SGYT-HD------------------GSFQQYATADAVQAAHI  139 (347)
T ss_dssp             CCTTCEEEECSEEECCSSSTTTTTTCGGGCTTCEE---BTTT-BC------------------CSSBSEEEEETTTSEEE
T ss_pred             CcCCCEEEEecCCCCCCCChhhhCCCcccCccccc---cccC-CC------------------CcceeEEEeccccEEEC
Confidence            9999999987644 599999999999999987643   2221 22                  49999999999999999


Q ss_pred             CCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      |+++++++|+++.+++.|||+++.. .++++|++|||+|+ |++|++++|+++.+|+ +|+++++++++++.++++|++
T Consensus       140 P~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~~g~~  216 (347)
T 2hcy_A          140 PQGTDLAQVAPILCAGITVYKALKS-ANLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRSIGGE  216 (347)
T ss_dssp             CTTCCHHHHGGGGTHHHHHHHHHHT-TTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHHTTCC
T ss_pred             CCCCCHHHHHHHhhhHHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHHcCCc
Confidence            9999999999999999999998754 48999999999998 9999999999999999 999999999999999999975

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=3.8e-42  Score=300.14  Aligned_cols=209  Identities=28%  Similarity=0.436  Sum_probs=191.3

Q ss_pred             eeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (243)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~   86 (243)
                      |||+++.+++.+  +++++++.|+|++|||+|||++++||++|++++.|.++. ..+|.++|||++|+|+++|+++++|+
T Consensus         1 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   80 (343)
T 2eih_A            1 MRAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVGPGVEGFA   80 (343)
T ss_dssp             CEEEEECSSSSGGGEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSSTTCCSSEECCSEEEEEEEEECSSCCSCC
T ss_pred             CeEEEEecCCCCceEEEEecCCCCCCCCEEEEEEEEEEeCHHHHHHhcCCCCCCCCCCcccccceEEEEEEECCCCCCCC
Confidence            789999998865  899999999999999999999999999999999987643 36899999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (243)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  166 (243)
                      +||||++.+..+|++|.+|.+|+++.|++...   .|.. .+                  |+|+||+++|++.++++|++
T Consensus        81 vGdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~---~G~~-~~------------------G~~aey~~v~~~~~~~~P~~  138 (343)
T 2eih_A           81 PGDEVVINPGLSCGRCERCLAGEDNLCPRYQI---LGEH-RH------------------GTYAEYVVLPEANLAPKPKN  138 (343)
T ss_dssp             TTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---TTTS-SC------------------CSSBSEEEEEGGGEEECCTT
T ss_pred             CCCEEEECCCCCcccchhhccCcccccccccc---cCcC-CC------------------ccceeEEEeChHHeEECCCC
Confidence            99999999999999999999999999987653   2322 22                  49999999999999999999


Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +++++|++++.++.|||+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|+++++++++++.++++|++
T Consensus       139 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~ga~  213 (343)
T 2eih_A          139 LSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGAD  213 (343)
T ss_dssp             SCHHHHHHSHHHHHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCS
T ss_pred             CCHHHHhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCC
Confidence            9999999999999999998877678999999999998 9999999999999999 999999999999999999986

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=2.5e-42  Score=301.30  Aligned_cols=207  Identities=28%  Similarity=0.440  Sum_probs=186.1

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC---CCCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTEVQ   86 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~---~~~~p~~~G~e~vG~V~~~G~~~~~~~   86 (243)
                      |||+++.+++.+++++++|.|+|++|||+|||++++||++|++++.|.++   ...+|.++|||++|+|+++|+++++|+
T Consensus         1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   80 (343)
T 2dq4_A            1 MRALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQ   80 (343)
T ss_dssp             CEEEEECSSSSSCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTCHHHHHHCCSSEECCCEEEEEEEEECTTCCSSC
T ss_pred             CeEEEEeCCCCcEEEEeccCCCCCCCEEEEEEEEEeechhhHHHHcCCCCccccCCCCCcCCccceEEEEEECCCCCcCC
Confidence            78999999887799999999999999999999999999999999998654   246889999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (243)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  166 (243)
                      +||||++.+..+|++|.+|.+|++++|++...   +|.. .+                  |+|+||+++|++.++++|++
T Consensus        81 vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~-~~------------------G~~aey~~v~~~~~~~iP~~  138 (343)
T 2dq4_A           81 VGDHVSLESHIVCHACPACRTGNYHVCLNTQI---LGVD-RD------------------GGFAEYVVVPAENAWVNPKD  138 (343)
T ss_dssp             TTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---BTTT-BC------------------CSSBSEEEEEGGGEEEECTT
T ss_pred             CCCEEEECCCCCCCCChhhhCcCcccCCCcce---ecCC-CC------------------CcceeEEEEchHHeEECCCC
Confidence            99999999999999999999999999997653   2221 22                  49999999999999999999


Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +++++|+++ .++.|||+++.+..++ +|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++ ++
T Consensus       139 ~~~~~aa~~-~~~~ta~~~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~  210 (343)
T 2dq4_A          139 LPFEVAAIL-EPFGNAVHTVYAGSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-AD  210 (343)
T ss_dssp             SCHHHHTTH-HHHHHHHHHHHSTTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CS
T ss_pred             CCHHHHHhh-hHHHHHHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HH
Confidence            999999887 4677999988657788 999999999999999999999999997799999999999998887 65

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.6e-41  Score=300.21  Aligned_cols=218  Identities=27%  Similarity=0.380  Sum_probs=189.1

Q ss_pred             cceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCC----
Q 026087            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT----   83 (243)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~----   83 (243)
                      .+|||+++.++++.++++++|.|+|++|||||||++++||++|++++.|.++..++|.++|||++|+|+++| +++    
T Consensus        16 ~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~P~v~GhE~~G~V~~vG-~V~~~~~   94 (380)
T 1vj0_A           16 LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVN-GEKRDLN   94 (380)
T ss_dssp             EEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEES-SCCBCTT
T ss_pred             hheEEEEEecCCCCeEEEEccCCCCCCCEEEEEEeEEeecccchHHhcCCCCCCCCCcccCcCcEEEEEEeC-Ccccccc
Confidence            479999999998559999999999999999999999999999999999976545689999999999999999 999    


Q ss_pred             --cCCCCCEEeeecccCCCCCcccc-CCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEe-ccce
Q 026087           84 --EVQPGDHVIPCYQAECRECKFCK-SGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVV-HDVS  159 (243)
Q Consensus        84 --~~~~Gd~V~~~~~~~~~~c~~c~-~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~  159 (243)
                        +|++||||++.+..+|+.|.+|. +|++++|++...   +|....++           ......|+|+||+++ |++.
T Consensus        95 ~~~~~vGdrV~~~~~~~cg~C~~C~~~g~~~~C~~~~~---~g~~~~~~-----------~~~~~~G~~aey~~v~~~~~  160 (380)
T 1vj0_A           95 GELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV---YGINRGCS-----------EYPHLRGCYSSHIVLDPETD  160 (380)
T ss_dssp             SCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEE---TTTTCCSS-----------STTCCCSSSBSEEEECTTCC
T ss_pred             CCCCCCCCEEEEcccCCCCCCHHHhcCCCcccCCCcce---eccccccC-----------CCCCCCccccceEEEcccce
Confidence              99999999999999999999999 999999987542   22100000           000113599999999 9999


Q ss_pred             eEEcCCCCChh-hhhhcccccchhhhhhhhcCC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          160 VAKIDPQAPLD-KVCLLGCGVPTGLGAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       160 ~~~lp~~~~~~-~aa~l~~~~~ta~~~~~~~~~-~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      ++++|++++++ +|+++. ++.|||+++ ...+ +++|++|||+|+|++|++++|+|+.+|+.+|++++++++|++++++
T Consensus       161 ~~~iP~~l~~~~~Aa~~~-~~~ta~~al-~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~  238 (380)
T 1vj0_A          161 VLKVSEKDDLDVLAMAMC-SGATAYHAF-DEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE  238 (380)
T ss_dssp             EEEECTTSCHHHHHHHTT-HHHHHHHHH-HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH
T ss_pred             EEECCCCCChHHhHhhhc-HHHHHHHHH-HhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH
Confidence            99999999999 666666 999999987 5678 9999999999999999999999999994499999999999999999


Q ss_pred             hcccC
Q 026087          238 ALAMS  242 (243)
Q Consensus       238 ~Ga~~  242 (243)
                      +|++.
T Consensus       239 lGa~~  243 (380)
T 1vj0_A          239 IGADL  243 (380)
T ss_dssp             TTCSE
T ss_pred             cCCcE
Confidence            99874

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.9e-41  Score=301.29  Aligned_cols=215  Identities=28%  Similarity=0.364  Sum_probs=188.0

Q ss_pred             ceeEEEEecCCCCeEEEeeccCCCC-CCc------EEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCC
Q 026087            9 TCKAAVAWEPNKPLVIEDVQVAPPQ-AGE------VRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG   81 (243)
Q Consensus         9 ~~~a~~~~~~~~~~~~~~~~~p~~~-~~e------vlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~   81 (243)
                      +|||+++.+++. ++++++|.|+|. ++|      |||||++++||++|++++.|.++ .++|.++|||++|+|+++|++
T Consensus         2 ~Mka~~~~~~~~-l~~~~~p~P~~~~~~e~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~p~v~GhE~~G~V~~vG~~   79 (398)
T 1kol_A            2 GNRGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT-AQVGLVLGHEITGEVIEKGRD   79 (398)
T ss_dssp             CEEEEEEEETTE-EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC-CCTTCBCCCCEEEEEEEECTT
T ss_pred             ccEEEEEecCCc-eEEEEecCCCCCCCCcccccceEEEEEEEEeechhhHHHHcCCCC-CCCCcccCcccEEEEEEECCC
Confidence            699999998875 999999999996 898      99999999999999999998653 357899999999999999999


Q ss_pred             CCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCC---CCceecCCCccccccCCcceeeecCCcceeeEEEeccc
Q 026087           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT---GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV  158 (243)
Q Consensus        82 ~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~---~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  158 (243)
                      +++|++||||++.+..+|+.|.+|.+|++++|++.....   .+|+...               ....|+|+||+++|.+
T Consensus        80 v~~~~vGDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~---------------~~~~G~~aey~~v~~~  144 (398)
T 1kol_A           80 VENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDM---------------GDWTGGQAEYVLVPYA  144 (398)
T ss_dssp             CCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTS---------------CCBCCCSBSEEEESSH
T ss_pred             CCcCCCCCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeeccC---------------CCCCceeeeEEEecch
Confidence            999999999999888899999999999999998764210   0111000               0113599999999986


Q ss_pred             --eeEEcCCCCChhh----hhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHH
Q 026087          159 --SVAKIDPQAPLDK----VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (243)
Q Consensus       159 --~~~~lp~~~~~~~----aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~  232 (243)
                        .++++|+++++++    ++++..++.|||+++. ..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+
T Consensus       145 ~~~~~~~P~~~~~~~~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~  223 (398)
T 1kol_A          145 DFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGAV-TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARL  223 (398)
T ss_dssp             HHHCEECSCHHHHHHTHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH
T ss_pred             hCeEEECCCCcchhhhcccccccccHHHHHHHHHH-HcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHH
Confidence              8999999999887    7888889999999874 78899999999999999999999999999997899999999999


Q ss_pred             HHHHHhccc
Q 026087          233 DRVLNALAM  241 (243)
Q Consensus       233 ~~~~~~Ga~  241 (243)
                      ++++++|++
T Consensus       224 ~~a~~lGa~  232 (398)
T 1kol_A          224 AHAKAQGFE  232 (398)
T ss_dssp             HHHHHTTCE
T ss_pred             HHHHHcCCc
Confidence            999999986

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=1.7e-41  Score=301.73  Aligned_cols=214  Identities=26%  Similarity=0.356  Sum_probs=188.2

Q ss_pred             ceeEEEEecCCCCeEEEeeccCCC-CC-----CcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCC
Q 026087            9 TCKAAVAWEPNKPLVIEDVQVAPP-QA-----GEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV   82 (243)
Q Consensus         9 ~~~a~~~~~~~~~~~~~~~~~p~~-~~-----~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~   82 (243)
                      +|||+++.+++. ++++++|.|+| ++     +||+|||++++||++|++++.|.++ .++|.++|||++|+|+++|+++
T Consensus         2 ~MkA~~~~~~~~-l~~~~~p~P~~~~~~~~~~~eVlVkv~a~gic~~D~~~~~G~~~-~~~p~v~GhE~~G~V~~vG~~v   79 (398)
T 2dph_A            2 GNKSVVYHGTRD-LRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFI-VPKGHVLGHEITGEVVEKGSDV   79 (398)
T ss_dssp             CEEEEEEEETTE-EEEEEECCCCSEETTEECTTCEEEEEEEEECCHHHHHHHTTSSC-CCTTCBCCCCEEEEEEEECTTC
T ss_pred             ccEEEEEEcCCC-EEEEEccCCCCCCCcCCCCCeEEEEEEEEeecHHHHHHhcCCCC-CCCCcccCCceEEEEEEECCCC
Confidence            699999999865 99999999998 68     9999999999999999999998643 3678999999999999999999


Q ss_pred             CcCCCCCEEeeecccCCCCCccccCCCCCCCCC--ccC---CCCCceecCCCccccccCCcceeeecCCcceeeEEEecc
Q 026087           83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGK--VRG---ATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD  157 (243)
Q Consensus        83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~--~~~---~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  157 (243)
                      ++|++||||++.+..+|+.|.+|.+|++++|++  ...   ...+|+. .               ....|+|+||++++.
T Consensus        80 ~~~~vGDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~-~---------------~~~~G~~aey~~v~~  143 (398)
T 2dph_A           80 ELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFD-L---------------KGWSGGQAEYVLVPY  143 (398)
T ss_dssp             CSCCTTCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTT-B---------------SSCCCSSBSEEEESS
T ss_pred             CCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCccccccccccccccc-c---------------CCCCceeeeeEEecc
Confidence            999999999999999999999999999999987  210   0011210 0               011359999999998


Q ss_pred             c--eeEEcCCCCChhh----hhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087          158 V--SVAKIDPQAPLDK----VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (243)
Q Consensus       158 ~--~~~~lp~~~~~~~----aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~  231 (243)
                      +  .++++|+++++++    ++++..++.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|
T Consensus       144 ~~~~~~~iP~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~  222 (398)
T 2dph_A          144 ADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGC-VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPER  222 (398)
T ss_dssp             HHHHCEECSSHHHHHHTHHHHTTTTTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHH
T ss_pred             ccCeEEECCCCCChhhhcchhhhhcCHHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHH
Confidence            7  8999999999988    888888999999987 78899999999999999999999999999999889999999999


Q ss_pred             HHHHHHhccc
Q 026087          232 FDRVLNALAM  241 (243)
Q Consensus       232 ~~~~~~~Ga~  241 (243)
                      +++++++|++
T Consensus       223 ~~~a~~lGa~  232 (398)
T 2dph_A          223 LKLLSDAGFE  232 (398)
T ss_dssp             HHHHHTTTCE
T ss_pred             HHHHHHcCCc
Confidence            9999999985

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=7.2e-42  Score=299.98  Aligned_cols=209  Identities=19%  Similarity=0.213  Sum_probs=184.5

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCC---CeeeeeceEEEEEEeCCCCCcCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF---PCILGHEAAGIVESVGEGVTEVQ   86 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~---p~~~G~e~vG~V~~~G~~~~~~~   86 (243)
                      |||+++.+++++++++++|.|+|++|||||||++++||++|++++.|.++..++   |.++|||++| |+++|++ ++|+
T Consensus         1 MkA~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G-V~~vG~~-~~~~   78 (357)
T 2b5w_A            1 MKAIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVLGHEAVG-VVVDPND-TELE   78 (357)
T ss_dssp             CEEEEEETTCSSCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHSCSTTSCTTCSEEECCSEEEE-EEEECTT-SSCC
T ss_pred             CeEEEEeCCCCceEEEECCCCCCCcCEEEEEEeEEeechhcHHHHcCCCCCCCCCCCCcccCceeEE-EEEECCC-CCCC
Confidence            789999998877999999999999999999999999999999999987654456   8999999999 9999999 9999


Q ss_pred             CCCEEeeecccC--CCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087           87 PGDHVIPCYQAE--CRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (243)
Q Consensus        87 ~Gd~V~~~~~~~--~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp  164 (243)
                      +||||++.+...  |++|.+|.+|++++|++..... .|....+                  |+|+||+++|++.++++|
T Consensus        79 vGdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~-~g~~~~~------------------G~~aey~~v~~~~~~~iP  139 (357)
T 2b5w_A           79 EGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFE-RGIVGAH------------------GYMSEFFTSPEKYLVRIP  139 (357)
T ss_dssp             TTCEEEECSEECCTTCCCHHHHTTCGGGCCTTSCEE-ETTBEEC------------------CSCBSEEEEEGGGEEECC
T ss_pred             CCCEEEECCcCCCCCCCChHHhCcCcccCCCCcccc-cCccCCC------------------cceeeEEEEchHHeEECC
Confidence            999999988777  9999999999999999764310 0220022                  399999999999999999


Q ss_pred             CCCChhhhhhcccccchhhhhhhhcCCCCCC------CEEEEEcCCHHHHHH-HHHH-HHcCCCEEEEEcCChh---HHH
Q 026087          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPG------SIVAVFGLGTVGLAV-AEGA-KAAGASRVIGIDIDPK---KFD  233 (243)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g------~~vlV~G~g~~G~~a-~~~a-~~~G~~~vi~~~~~~~---~~~  233 (243)
                      ++++ ++ |+++.++.|||+++ +..++++|      ++|||+|+|++|+++ +|+| +.+|+++|++++++++   |++
T Consensus       140 ~~~~-~~-aal~~~~~ta~~al-~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~  216 (357)
T 2b5w_A          140 RSQA-EL-GFLIEPISITEKAL-EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTID  216 (357)
T ss_dssp             GGGS-TT-GGGHHHHHHHHHHH-HHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHH
T ss_pred             CCcc-hh-hhhhchHHHHHHHH-HhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHH
Confidence            9999 54 45667899999987 67788999      999999999999999 9999 9999955999999999   999


Q ss_pred             HHHHhcccC
Q 026087          234 RVLNALAMS  242 (243)
Q Consensus       234 ~~~~~Ga~~  242 (243)
                      +++++|++.
T Consensus       217 ~~~~lGa~~  225 (357)
T 2b5w_A          217 IIEELDATY  225 (357)
T ss_dssp             HHHHTTCEE
T ss_pred             HHHHcCCcc
Confidence            999999874

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=3.6e-41  Score=294.43  Aligned_cols=208  Identities=29%  Similarity=0.441  Sum_probs=188.1

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC--------CCCCCeeeeeceEEEEEEeCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP--------EGLFPCILGHEAAGIVESVGEG   81 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~--------~~~~p~~~G~e~vG~V~~~G~~   81 (243)
                      |||+++.+++.+++++++|.|+|+++||+|||++++||++|++++.|.++        ...+|.++|||++|+|+++|++
T Consensus         1 Mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~   80 (347)
T 1jvb_A            1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE   80 (347)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred             CeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEEEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEEEECCC
Confidence            78999999987799999999999999999999999999999999988654        2368999999999999999999


Q ss_pred             CCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEecc-cee
Q 026087           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD-VSV  160 (243)
Q Consensus        82 ~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~  160 (243)
                      +++|++||||+..+..+|++|.+|.+|++++|++...   +|+. .+                  |+|+||+++|+ +.+
T Consensus        81 v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~-~~------------------G~~aey~~v~~~~~~  138 (347)
T 1jvb_A           81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRW---LGIN-FD------------------GAYAEYVIVPHYKYM  138 (347)
T ss_dssp             CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEE---BTTT-BC------------------CSSBSEEEESCGGGE
T ss_pred             CCCCCCCCEEEeCCCCCCCCChhhhCcCcccCccccc---cccc-CC------------------CcceeEEEecCccce
Confidence            9999999999888888999999999999999987643   2322 22                  49999999999 999


Q ss_pred             EEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHHHh
Q 026087          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       161 ~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~-G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      +++ +++++++|+.+.+++.|||+++. ..++++|++|||+|+ |++|++++|+++.+ |+ +|++++++++++++++++
T Consensus       139 ~~i-~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~  215 (347)
T 1jvb_A          139 YKL-RRLNAVEAAPLTCSGITTYRAVR-KASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRA  215 (347)
T ss_dssp             EEC-SSSCHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHH
T ss_pred             EEe-CCCCHHHcccchhhHHHHHHHHH-hcCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHh
Confidence            999 99999999999999999999874 588999999999998 49999999999999 99 899999999999999999


Q ss_pred             cccC
Q 026087          239 LAMS  242 (243)
Q Consensus       239 Ga~~  242 (243)
                      |++.
T Consensus       216 g~~~  219 (347)
T 1jvb_A          216 GADY  219 (347)
T ss_dssp             TCSE
T ss_pred             CCCE
Confidence            9863

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=2.1e-40  Score=291.37  Aligned_cols=210  Identities=22%  Similarity=0.217  Sum_probs=183.8

Q ss_pred             cccceeEEEEecCC-CCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCC
Q 026087            6 QVITCKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVT   83 (243)
Q Consensus         6 ~~~~~~a~~~~~~~-~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~   83 (243)
                      ++.+|||+++.+++ +.++++++|.|+|++|||||||++++||++|++++.|.++. .++|.++|||++|+|+++|++++
T Consensus        24 m~~~mkA~~~~~~~~~~l~~~e~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~GhE~~G~V~~vG~~v~  103 (363)
T 3uog_A           24 MSKWMQEWSTETVAPHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGKSVT  103 (363)
T ss_dssp             CCSEEEEEEBSCTTTTCCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCTTCCCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             CchhhEEEEEccCCCCCcEEEeeeCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCcCcccceEEEEEEECCCCC
Confidence            34679999999764 34999999999999999999999999999999999987653 47899999999999999999999


Q ss_pred             cCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCC-CceecCCCccccccCCcceeeecCCcceeeEEEeccceeEE
Q 026087           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG-AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK  162 (243)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~-~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  162 (243)
                      +|++||||++.+..      +|..|. +.|........ +|.. .                  .|+|+||+++|++.+++
T Consensus       104 ~~~vGDrV~~~~~~------~c~~g~-~~c~~~~~~~~~~g~~-~------------------~G~~aey~~v~~~~~~~  157 (363)
T 3uog_A          104 RFRPGDRVISTFAP------GWLDGL-RPGTGRTPAYETLGGA-H------------------PGVLSEYVVLPEGWFVA  157 (363)
T ss_dssp             SCCTTCEEEECSST------TCCSSS-CCSCSSCCCCCCTTTT-S------------------CCCCBSEEEEEGGGEEE
T ss_pred             CCCCCCEEEEeccc------cccccc-cccccccccccccCcC-C------------------CCcceeEEEechHHeEE
Confidence            99999999987543      567777 88874221111 2221 2                  24999999999999999


Q ss_pred             cCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       163 lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +|+++++++||++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|++.
T Consensus       158 iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~  236 (363)
T 3uog_A          158 APKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFALGADH  236 (363)
T ss_dssp             CCTTSCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTCSE
T ss_pred             CCCCCCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHcCCCE
Confidence            999999999999999999999998888999999999999999999999999999999 9999999999999999999974

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=100.00  E-value=1.3e-41  Score=303.08  Aligned_cols=211  Identities=25%  Similarity=0.331  Sum_probs=182.9

Q ss_pred             ceeEEEEecCCCCeEEEeeccCC-CCCCcEEEEEeEEecChhhHHhhcCCC------C-CCCCCeeeeeceEEEEEEeCC
Q 026087            9 TCKAAVAWEPNKPLVIEDVQVAP-PQAGEVRIKILFTALCHTDAYTWSGKD------P-EGLFPCILGHEAAGIVESVGE   80 (243)
Q Consensus         9 ~~~a~~~~~~~~~~~~~~~~~p~-~~~~evlVkv~a~~i~~~D~~~~~g~~------~-~~~~p~~~G~e~vG~V~~~G~   80 (243)
                      +|++.++..++. ++++++|.|+ |++|||||||++++||++|++++.|..      + ..++|.++|||++|+|+++|+
T Consensus        30 ~m~a~~~~~~~~-l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~P~i~G~E~~G~V~~vG~  108 (404)
T 3ip1_A           30 TWLGSKVWRYPE-VRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVEAGP  108 (404)
T ss_dssp             BSCGGGTEEEEE-EEEEEECCCCCCSTTEEEEEEEEEECCHHHHHHHCBCTTSBBSCCSCBCSSEECCCEEEEEEEEECT
T ss_pred             hcceEEEEeCCc-eEEEEcCCCCCCCcCEEEEEEeEeeeCHHHHHHhcCCCCccccccccCCCCcccCccceEEEEEECC
Confidence            344444444433 7899999999 999999999999999999999998642      1 236899999999999999999


Q ss_pred             CC------CcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEE
Q 026087           81 GV------TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTV  154 (243)
Q Consensus        81 ~~------~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~  154 (243)
                      ++      ++|++||||++.+..+|+.|.+|.+|+++.|++...   +|.. .+                  |+|+||++
T Consensus       109 ~v~~~~~~~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~g~~-~~------------------G~~aey~~  166 (404)
T 3ip1_A          109 EAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNE---LGFN-VD------------------GAFAEYVK  166 (404)
T ss_dssp             TCEETTTTEECCTTCEEEECSEECCSCSHHHHTTCGGGCTTCEE---BTTT-BC------------------CSSBSEEE
T ss_pred             CccccccCCCCCCCCEEEECCccCCCCCHHHHCcCcccCccccc---cCCC-CC------------------CCCcceEE
Confidence            99      889999999999999999999999999999998653   2332 23                  49999999


Q ss_pred             eccceeEEcCCCCC------hhhhhhcccccchhhhhhhhc-CCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC
Q 026087          155 VHDVSVAKIDPQAP------LDKVCLLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI  227 (243)
Q Consensus       155 ~~~~~~~~lp~~~~------~~~aa~l~~~~~ta~~~~~~~-~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~  227 (243)
                      +|.+.++++|++++      +.+++++..++.|||+++... .++++|++|||+|+|++|++++|+|+.+|+++|+++++
T Consensus       167 v~~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  246 (404)
T 3ip1_A          167 VDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEP  246 (404)
T ss_dssp             EEGGGEEECGGGBTTBCTHHHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             echHHeEeccccccccccccchhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            99999999999875      455888888999999988655 48999999999999999999999999999989999999


Q ss_pred             ChhHHHHHHHhcccC
Q 026087          228 DPKKFDRVLNALAMS  242 (243)
Q Consensus       228 ~~~~~~~~~~~Ga~~  242 (243)
                      +++|+++++++|++.
T Consensus       247 ~~~~~~~~~~lGa~~  261 (404)
T 3ip1_A          247 SEVRRNLAKELGADH  261 (404)
T ss_dssp             CHHHHHHHHHHTCSE
T ss_pred             CHHHHHHHHHcCCCE
Confidence            999999999999974

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=2e-40  Score=291.85  Aligned_cols=218  Identities=26%  Similarity=0.370  Sum_probs=184.0

Q ss_pred             cceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCC
Q 026087            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (243)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~   87 (243)
                      |+++++...+..+.+++++++.|+|++|||+|||++++||++|++++.|.++...+|.++|||++|+|+++|+++++|++
T Consensus        15 mk~~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~~~v   94 (366)
T 1yqd_A           15 VKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPLVPGHEIVGEVTEVGSKVKKVNV   94 (366)
T ss_dssp             EEEEEEEECSTTCCEEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHHTSSSCCCSSBCCCCCEEEEEEEECTTCCSCCT
T ss_pred             eeEEEEEEcCCCCCcEEEEccCCCCCCCeEEEEEEEEeechhhHHHHcCCCCCCCCCEecccceEEEEEEECCCCCcCCC
Confidence            34445555455556999999999999999999999999999999999987654568999999999999999999999999


Q ss_pred             CCEEeeecc-cCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087           88 GDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (243)
Q Consensus        88 Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  166 (243)
                      ||||++.+. .+|+.|.+|.+|+++.|....... .|.. ..|             ....|+|+||+++|++.++++|++
T Consensus        95 GDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~-~~~~-~~g-------------~~~~G~~aey~~v~~~~~~~~P~~  159 (366)
T 1yqd_A           95 GDKVGVGCLVGACHSCESCANDLENYCPKMILTY-ASIY-HDG-------------TITYGGYSNHMVANERYIIRFPDN  159 (366)
T ss_dssp             TCEEEECSEEECCSSSHHHHTTCGGGCTTCEESS-SSBC-TTS-------------CBCCCSSBSEEEEEGGGCEECCTT
T ss_pred             CCEEEEcCCcCCCCCChhhhCcCcccCCcccccc-cccc-cCC-------------CcCCCccccEEEEchhhEEECCCC
Confidence            999987654 579999999999999996543210 1100 001             112359999999999999999999


Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCC-CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-HhcccC
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVE-PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL-NALAMS  242 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~-~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~-~~Ga~~  242 (243)
                      +++++|+++.+++.|||+++.. .+++ +|++|||+|+|++|++++|+|+.+|+ +|+++++++++++.++ ++|++.
T Consensus       160 ls~~~aa~l~~~~~ta~~al~~-~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~lGa~~  235 (366)
T 1yqd_A          160 MPLDGGAPLLCAGITVYSPLKY-FGLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALKNFGADS  235 (366)
T ss_dssp             SCTTTTGGGGTHHHHHHHHHHH-TTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHHTSCCSE
T ss_pred             CCHHHhhhhhhhHHHHHHHHHh-cCcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCCce
Confidence            9999999999999999997754 5677 99999999999999999999999999 8999999999999887 899863

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=1e-40  Score=291.21  Aligned_cols=209  Identities=25%  Similarity=0.401  Sum_probs=186.6

Q ss_pred             eeEEEEecC-CCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087           10 CKAAVAWEP-NKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (243)
Q Consensus        10 ~~a~~~~~~-~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G   88 (243)
                      |||+++... +..++++|+|.|+|+||||||||++++||++|++++.|.++. ++|.++|||++|+|+++|+++++|++|
T Consensus         1 MKA~v~~~~~~~~~~l~e~~~P~~~p~eVLVkv~a~gic~~D~~~~~G~~~~-~~p~i~GhE~aG~V~~vG~~V~~~~~G   79 (348)
T 4eez_A            1 MKAAVVRHNPDGYADLVEKELRAIKPNEALLDMEYCGVCHTDLHVAAGDFGN-KAGTVLGHEGIGIVKEIGADVSSLQVG   79 (348)
T ss_dssp             CEEEEECSSCCSSEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTTTCC-CTTCBCCSEEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEEcCCCCcEEEEEeECCCCCCCEEEEEEEEEEECHHHHHHhcCCCCC-CCCcccceeEEEEEEEECceeeecccC
Confidence            899998754 345999999999999999999999999999999999998764 689999999999999999999999999


Q ss_pred             CEEeeeccc-CCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCC
Q 026087           89 DHVIPCYQA-ECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (243)
Q Consensus        89 d~V~~~~~~-~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~  167 (243)
                      |||.+.+.. .|+.|.+|..+..+.|......   +.. .+                  |+|+||+.++++.++++|+++
T Consensus        80 drV~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~-~~------------------G~~ae~~~~~~~~~~~iP~~~  137 (348)
T 4eez_A           80 DRVSVAWFFEGCGHCEYCVSGNETFCREVKNA---GYS-VD------------------GGMAEEAIVVADYAVKVPDGL  137 (348)
T ss_dssp             CEEEEESEEECCSSSHHHHTTCGGGCTTCEEB---TTT-BC------------------CSSBSEEEEEGGGSCBCCTTS
T ss_pred             CeEeecccccccCccccccCCccccccccccc---ccc-cC------------------CcceeeccccccceeecCCCC
Confidence            999887654 5799999999999999876542   211 23                  499999999999999999999


Q ss_pred             ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++++|+++++++.|+|+++ +..++++|++|||+|+|++|.+++|+++.++..+||+++++++|+++++++|++.
T Consensus       138 ~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~  211 (348)
T 4eez_A          138 DPIEASSITCAGVTTYKAI-KVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADV  211 (348)
T ss_dssp             CHHHHHHHHHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSE
T ss_pred             CHHHHhhcccceeeEEeee-cccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeE
Confidence            9999999999999999965 6778999999999999999999999999875559999999999999999999974

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=8.4e-40  Score=282.10  Aligned_cols=187  Identities=14%  Similarity=0.137  Sum_probs=170.7

Q ss_pred             ccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087            7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (243)
Q Consensus         7 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~   86 (243)
                      |.||||+++.+..+.++++++|.|+|++|||+|||++++||++|++++.|.++..++|.++|||++|+|+++|+++++|+
T Consensus         2 M~tMka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~   81 (315)
T 3goh_A            2 MEQHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINWSNGHVPGVDGAGVIVKVGAKVDSKM   81 (315)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHHCTTCCCTTCCCCSEEEEEEEEECTTSCGGG
T ss_pred             CcceEEEEEeCCCCeeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHcCCCCcCCCCCEeeeeeEEEEEEeCCCCCCCC
Confidence            34899999996334499999999999999999999999999999999999877668899999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (243)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  166 (243)
                      +||||+..+..                           . .+                  |+|+||+++|++.++++|++
T Consensus        82 vGdrV~~~~~~---------------------------~-~~------------------G~~aey~~v~~~~~~~iP~~  115 (315)
T 3goh_A           82 LGRRVAYHTSL---------------------------K-RH------------------GSFAEFTVLNTDRVMTLPDN  115 (315)
T ss_dssp             TTCEEEEECCT---------------------------T-SC------------------CSSBSEEEEETTSEEECCTT
T ss_pred             CCCEEEEeCCC---------------------------C-CC------------------cccccEEEEcHHHhccCcCC
Confidence            99999865320                           0 12                  39999999999999999999


Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++++||+++.++.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+ +|++++ +++|+++++++|++.
T Consensus       116 ~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~lGa~~  188 (315)
T 3goh_A          116 LSFERAAALPCPLLTAWQAF-EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKRGVRH  188 (315)
T ss_dssp             SCHHHHHTSHHHHHHHHHHH-TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHHTEEE
T ss_pred             CCHHHHhhCccHHHHHHHHH-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHcCCCE
Confidence            99999999999999999988 88999999999999999999999999999999 999999 899999999999974

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=100.00  E-value=4.7e-40  Score=289.34  Aligned_cols=208  Identities=20%  Similarity=0.267  Sum_probs=178.5

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCC-CcEEEEEeEEecChhhHHhhcC--CCCCCCC---CeeeeeceEEEEEEeCCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQA-GEVRIKILFTALCHTDAYTWSG--KDPEGLF---PCILGHEAAGIVESVGEGVT   83 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~-~evlVkv~a~~i~~~D~~~~~g--~~~~~~~---p~~~G~e~vG~V~~~G~~~~   83 (243)
                      |||+++.+++.+++++++|.|+|++ +||+|||++++||++|++++.|  .++..++   |.++|||++|+|++  ++ +
T Consensus         1 MkA~~~~~~g~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~--~~-~   77 (366)
T 2cdc_A            1 MKAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDFLVLGHEAIGVVEE--SY-H   77 (366)
T ss_dssp             CEEEEECTTSCCCEEEECCGGGSCCCSSEEEEEEEEEECHHHHHHHTTCC-------CCSCEECCSEEEEEECS--CC-S
T ss_pred             CeEEEEeCCCCceEEEECcCCCCCCCCEEEEEEEEEeeccccHHHHcCCCCCCCCCcCCCCCcCCcceEEEEEe--CC-C
Confidence            7899999988779999999999999 9999999999999999999998  5543356   89999999999999  67 8


Q ss_pred             cCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEc
Q 026087           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (243)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l  163 (243)
                      +|++||||++.+..+|++|.+|.+|++++|++.... ..|....                  .|+|+||++++++.++++
T Consensus        78 ~~~~GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~-~~g~~~~------------------~G~~aey~~v~~~~~~~i  138 (366)
T 2cdc_A           78 GFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFG-EAGIHKM------------------DGFMREWWYDDPKYLVKI  138 (366)
T ss_dssp             SCCTTCEEEECSEECCSSSHHHHTTCGGGCSSSCCE-EETTBEE------------------CCSCBSEEEECGGGEEEE
T ss_pred             CCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCcc-cCCccCC------------------CCceeEEEEechHHeEEC
Confidence            999999999999999999999999999999875421 0021101                  249999999999999999


Q ss_pred             CCCCChhhhhhcccccchhhhhhh--h--cCCCC--C-------CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh-
Q 026087          164 DPQAPLDKVCLLGCGVPTGLGAVW--N--TAKVE--P-------GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP-  229 (243)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~~~--~--~~~~~--~-------g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~-  229 (243)
                      |++++ ++|+ +..++.|||+++.  .  ..+++  +       |++|||+|+|++|++++|+++.+|+ +|+++++++ 
T Consensus       139 P~~l~-~~Aa-l~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~  215 (366)
T 2cdc_A          139 PKSIE-DIGI-LAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREP  215 (366)
T ss_dssp             CGGGT-TTGG-GHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCC
T ss_pred             cCCcc-hhhh-hcCcHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCcc
Confidence            99999 7765 6678899999886  4  67888  8       9999999999999999999999999 999999998 


Q ss_pred             --hHHHHHHHhcccC
Q 026087          230 --KKFDRVLNALAMS  242 (243)
Q Consensus       230 --~~~~~~~~~Ga~~  242 (243)
                        +++++++++|++.
T Consensus       216 ~~~~~~~~~~~ga~~  230 (366)
T 2cdc_A          216 TEVEQTVIEETKTNY  230 (366)
T ss_dssp             CHHHHHHHHHHTCEE
T ss_pred             chHHHHHHHHhCCce
Confidence              8999999999874

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=9.5e-40  Score=294.44  Aligned_cols=216  Identities=19%  Similarity=0.203  Sum_probs=185.9

Q ss_pred             CCcccceeEEEEecCC-------------CCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhc---------------
Q 026087            4 EGQVITCKAAVAWEPN-------------KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS---------------   55 (243)
Q Consensus         4 ~~~~~~~~a~~~~~~~-------------~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~---------------   55 (243)
                      .+.|.||||+++.+++             +.++++++|.|+|++|||+|||++++||++|++...               
T Consensus        19 ~~~p~tmkA~v~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVrV~a~gic~sD~~~~~~~~~~~~~~~~~~~~   98 (447)
T 4a0s_A           19 APVPDTYLALHLRAEDADMFKGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNAR   98 (447)
T ss_dssp             SCCCSEEEEEEEEGGGTTTTTTCSSCCHHHHCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSCHHHHHHHHHT
T ss_pred             cCCChhheeeeeeccccccccccccCCCCCCceEEeccCCCCCCCeEEEEEEEEEECcHHhhhhccCcccchhhhhhhcc
Confidence            4677899999999987             349999999999999999999999999999986432               


Q ss_pred             -CCCCC-CCCC-eeeeeceEEEEEEeCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccc
Q 026087           56 -GKDPE-GLFP-CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSR  132 (243)
Q Consensus        56 -g~~~~-~~~p-~~~G~e~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~  132 (243)
                       +.+.. .++| .++|||++|+|+++|+++++|++||||++.+..+|+.|..| ++..+.|.....   +|+...+    
T Consensus        99 ~g~~~~~~~~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~~~~~~-~~~~~~c~~~~~---~G~~~~~----  170 (447)
T 4a0s_A           99 QGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEPAT-HGDGMLGTEQRA---WGFETNF----  170 (447)
T ss_dssp             TCGGGGGGCCSEEECCSCEEEEEEEECTTCCSCCTTCEEEECSEECCTTSGGG-GTCTTCSTTCEE---TTTTSSS----
T ss_pred             cCccccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEecCcCcCccccc-cccccccccccc---ccccCCC----
Confidence             11111 2466 69999999999999999999999999999998888888755 577888877653   3332112    


Q ss_pred             cccCCcceeeecCCcceeeEEEeccceeEEcCCCCChhhhhhcccccchhhhhhhh--cCCCCCCCEEEEEcC-CHHHHH
Q 026087          133 FSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN--TAKVEPGSIVAVFGL-GTVGLA  209 (243)
Q Consensus       133 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~--~~~~~~g~~vlV~G~-g~~G~~  209 (243)
                                    |+|+||+++|++.++++|+++++++|+++++++.|||+++..  ..++++|++|||+|+ |++|++
T Consensus       171 --------------G~~aey~~v~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~  236 (447)
T 4a0s_A          171 --------------GGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSY  236 (447)
T ss_dssp             --------------CSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHH
T ss_pred             --------------CceeeeeecCHHHcEECCCCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHH
Confidence                          499999999999999999999999999998899999998764  388999999999998 999999


Q ss_pred             HHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          210 VAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       210 a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++|+|+.+|+ +|++++++++|+++++++|++.
T Consensus       237 a~qla~~~Ga-~vi~~~~~~~~~~~~~~lGa~~  268 (447)
T 4a0s_A          237 AIQFVKNGGG-IPVAVVSSAQKEAAVRALGCDL  268 (447)
T ss_dssp             HHHHHHHTTC-EEEEEESSHHHHHHHHHTTCCC
T ss_pred             HHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCE
Confidence            9999999999 8999999999999999999874

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=1.6e-39  Score=293.72  Aligned_cols=216  Identities=19%  Similarity=0.192  Sum_probs=186.3

Q ss_pred             CCcccceeEEEEecC---------------CCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCC----------
Q 026087            4 EGQVITCKAAVAWEP---------------NKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD----------   58 (243)
Q Consensus         4 ~~~~~~~~a~~~~~~---------------~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~----------   58 (243)
                      .+.|.||||+++.++               .+.++++++|.|+|++|||||||++++||++|++...+..          
T Consensus        25 ~~iP~tmkA~v~~~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~~~~~~~~~~~~~  104 (456)
T 3krt_A           25 LPLPESYRAITVHKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERY  104 (456)
T ss_dssp             SCCCSCEEEEEEEGGGTTTTTTCCGGGCCHHHHCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTCSSCSHHHHHHH
T ss_pred             CCCCcceEEEEEeccccccccccccccCCCCCCcEEEEccCCCCCCCeEEEEEEEEEecchhhhhhhcCcccchhhhhhc
Confidence            457789999999987               2448999999999999999999999999999987654321          


Q ss_pred             -------CCCCCC-eeeeeceEEEEEEeCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCc
Q 026087           59 -------PEGLFP-CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK  130 (243)
Q Consensus        59 -------~~~~~p-~~~G~e~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~  130 (243)
                             ...++| .++|||++|+|+++|+++++|++||+|++.+. .|..|..|..+..+.|+....   +|+...   
T Consensus       105 g~~~~~~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~-~c~~~~~~~~~~~~~c~~~~~---~G~~~~---  177 (456)
T 3krt_A          105 GRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCL-SVELESSDGHNDTMLDPEQRI---WGFETN---  177 (456)
T ss_dssp             HTSCHHHHTTCCSEEECCSCCEEEEEEECTTCCSCCTTCEEEECCE-ECCCCSGGGTTSGGGCTTCEE---TTTTSS---
T ss_pred             cccccccccCCCCcccccceeEEEEEEECCCCCCCCCCCEEEEeCC-cccccccccccccccCccccc---cccCCC---
Confidence                   012467 69999999999999999999999999998654 588888898899999987653   233212   


Q ss_pred             cccccCCcceeeecCCcceeeEEEeccceeEEcCCCCChhhhhhcccccchhhhhhhhc--CCCCCCCEEEEEcC-CHHH
Q 026087          131 SRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT--AKVEPGSIVAVFGL-GTVG  207 (243)
Q Consensus       131 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~--~~~~~g~~vlV~G~-g~~G  207 (243)
                                     .|+|+||+++|.+.++++|+++++++|+++++++.|||+++...  .++++|++|||+|+ |++|
T Consensus       178 ---------------~G~~aey~~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG  242 (456)
T 3krt_A          178 ---------------FGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLG  242 (456)
T ss_dssp             ---------------SCSSBSEEEEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHH
T ss_pred             ---------------CCcccceEEechHHeeECCCCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHH
Confidence                           24999999999999999999999999999988999999987654  78999999999998 9999


Q ss_pred             HHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          208 LAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       208 ~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++++|+|+.+|+ +|++++++++|+++++++|++.
T Consensus       243 ~~avqlak~~Ga-~vi~~~~~~~~~~~~~~lGa~~  276 (456)
T 3krt_A          243 SYATQFALAGGA-NPICVVSSPQKAEICRAMGAEA  276 (456)
T ss_dssp             HHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCCE
T ss_pred             HHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCcE
Confidence            999999999999 8899889999999999999874

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=4.5e-38  Score=274.48  Aligned_cols=194  Identities=28%  Similarity=0.323  Sum_probs=170.7

Q ss_pred             CCCCCcccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC--CCCCeeeeeceEEEEEEe
Q 026087            1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE--GLFPCILGHEAAGIVESV   78 (243)
Q Consensus         1 m~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~--~~~p~~~G~e~vG~V~~~   78 (243)
                      ||.  .+.+|||+++.+++++++++++|.|+|++|||||||++++||++|++++.|....  .++|.++|||++|+|+++
T Consensus         1 Ms~--~~~~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~P~v~G~E~~G~V~~v   78 (343)
T 3gaz_A            1 MSL--TTPTMIAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAV   78 (343)
T ss_dssp             -------CEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCCGGGCCCSSBCCCCEEEEEEEEE
T ss_pred             CCC--CchhheEEEEecCCCceEEEeccCCCCCCCEEEEEEEEEEeCHhhHHHhCCCCCCCCCCCCcccCcceEEEEEEE
Confidence            663  4578999999999988999999999999999999999999999999999987532  478999999999999999


Q ss_pred             CCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc
Q 026087           79 GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV  158 (243)
Q Consensus        79 G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  158 (243)
                      |+++++|++||||+....                          |....+                  |+|+||++++++
T Consensus        79 G~~v~~~~vGdrV~~~~~--------------------------g~~~~~------------------G~~aey~~v~~~  114 (343)
T 3gaz_A           79 GPEVDSFRVGDAVFGLTG--------------------------GVGGLQ------------------GTHAQFAAVDAR  114 (343)
T ss_dssp             CTTCCSCCTTCEEEEECC--------------------------SSTTCC------------------CSSBSEEEEEGG
T ss_pred             CCCCCCCCCCCEEEEEeC--------------------------CCCCCC------------------cceeeEEEecHH
Confidence            999999999999985421                          000012                  399999999999


Q ss_pred             eeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          159 SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       159 ~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      .++++|+++++++|+++++++.|||+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|+++ .++++++++++
T Consensus       115 ~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~  192 (343)
T 3gaz_A          115 LLASKPAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRD  192 (343)
T ss_dssp             GEEECCTTSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHH
T ss_pred             HeeeCCCCCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHH
Confidence            999999999999999999999999998888999999999999995 9999999999999999 89999 88999999999


Q ss_pred             hcccC
Q 026087          238 ALAMS  242 (243)
Q Consensus       238 ~Ga~~  242 (243)
                      +|++.
T Consensus       193 lGa~~  197 (343)
T 3gaz_A          193 LGATP  197 (343)
T ss_dssp             HTSEE
T ss_pred             cCCCE
Confidence            99863

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=8.5e-38  Score=273.75  Aligned_cols=190  Identities=20%  Similarity=0.177  Sum_probs=173.0

Q ss_pred             CCCcccceeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCC-CCCeeeeeceEEEEEEeC
Q 026087            3 TEGQVITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVG   79 (243)
Q Consensus         3 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~-~~p~~~G~e~vG~V~~~G   79 (243)
                      +...+.+|||+++.+++.+  +++++++.|+|++|||+|||++++||++|++++.|.++.. .+|.++|||++|+|+++|
T Consensus        22 ~~~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG  101 (353)
T 4dup_A           22 SMSLPQEMRFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPILGLELSGEIVGVG  101 (353)
T ss_dssp             -CCCCSSEEEEEESSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTSSCCCTTSCSSSCCEEEEEEEEEC
T ss_pred             cCCCChheeEEEEccCCCccceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCccccccEEEEEEEC
Confidence            3456788999999998765  9999999999999999999999999999999999987543 578999999999999999


Q ss_pred             CCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccce
Q 026087           80 EGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS  159 (243)
Q Consensus        80 ~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  159 (243)
                      +++++|++||||+...                               .+                  |+|+||+++|++.
T Consensus       102 ~~v~~~~vGdrV~~~~-------------------------------~~------------------G~~aey~~v~~~~  132 (353)
T 4dup_A          102 PGVSGYAVGDKVCGLA-------------------------------NG------------------GAYAEYCLLPAGQ  132 (353)
T ss_dssp             TTCCSCCTTCEEEEEC-------------------------------SS------------------CCSBSEEEEEGGG
T ss_pred             CCCCCCCCCCEEEEec-------------------------------CC------------------CceeeEEEEcHHH
Confidence            9999999999997432                               12                  3899999999999


Q ss_pred             eEEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087          160 VAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       160 ~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      ++++|+++++++|++++.++.|||+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|++++++++++++++++
T Consensus       133 ~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~l  211 (353)
T 4dup_A          133 ILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERL  211 (353)
T ss_dssp             EEECCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH
T ss_pred             cEeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc
Confidence            99999999999999999999999999888899999999999965 9999999999999999 899999999999999999


Q ss_pred             cccC
Q 026087          239 LAMS  242 (243)
Q Consensus       239 Ga~~  242 (243)
                      |++.
T Consensus       212 Ga~~  215 (353)
T 4dup_A          212 GAKR  215 (353)
T ss_dssp             TCSE
T ss_pred             CCCE
Confidence            9873

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=1.1e-37  Score=269.56  Aligned_cols=189  Identities=22%  Similarity=0.221  Sum_probs=167.2

Q ss_pred             cccceeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCC-----CCCCCCeeeeeceEEEEEEe
Q 026087            6 QVITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-----PEGLFPCILGHEAAGIVESV   78 (243)
Q Consensus         6 ~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~-----~~~~~p~~~G~e~vG~V~~~   78 (243)
                      .|++|||+++.+++.+  ++++++|.|+|++|||+|||++++||++|++++.|..     ...++|.++|||++|+|+++
T Consensus         3 ~m~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~v   82 (321)
T 3tqh_A            3 AMKEMKAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIEL   82 (321)
T ss_dssp             --CEEEEEEESSSCSGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEEEEEEE
T ss_pred             ccccceEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEEcCHHHHHHhcCCccccccccCCCCCcccceeEEEEEEe
Confidence            4568999999998876  9999999999999999999999999999999998832     23468999999999999999


Q ss_pred             CCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc
Q 026087           79 GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV  158 (243)
Q Consensus        79 G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  158 (243)
                      |+++++|++||||+..+..++                           .+                  |+|+||++++++
T Consensus        83 G~~v~~~~~GdrV~~~~~~~~---------------------------~~------------------G~~aey~~v~~~  117 (321)
T 3tqh_A           83 GSDVNNVNIGDKVMGIAGFPD---------------------------HP------------------CCYAEYVCASPD  117 (321)
T ss_dssp             CTTCCSCCTTCEEEEECSTTT---------------------------CC------------------CCSBSEEEECGG
T ss_pred             CCCCCCCCCCCEEEEccCCCC---------------------------CC------------------CcceEEEEecHH
Confidence            999999999999986542100                           22                  389999999999


Q ss_pred             eeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEc-CCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          159 SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       159 ~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G-~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      .++++|+++++++|+++++++.|||+++ +..++++|++|||+| +|++|++++|+|+.+|+ +|++++ ++++++++++
T Consensus       118 ~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~-~~~~~~~~~~  194 (321)
T 3tqh_A          118 TIIQKLEKLSFLQAASLPTAGLTALQAL-NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTA-SKRNHAFLKA  194 (321)
T ss_dssp             GEEECCTTSCHHHHHHSHHHHHHHHHHH-HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEE-CHHHHHHHHH
T ss_pred             HhccCCCCCCHHHHhhhhhHHHHHHHHH-HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEe-ccchHHHHHH
Confidence            9999999999999999999999999988 889999999999997 59999999999999999 899886 5667999999


Q ss_pred             hcccC
Q 026087          238 ALAMS  242 (243)
Q Consensus       238 ~Ga~~  242 (243)
                      +|++.
T Consensus       195 lGa~~  199 (321)
T 3tqh_A          195 LGAEQ  199 (321)
T ss_dssp             HTCSE
T ss_pred             cCCCE
Confidence            99973

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=7.5e-38  Score=275.11  Aligned_cols=191  Identities=20%  Similarity=0.242  Sum_probs=169.2

Q ss_pred             CcccceeEEEEecC---C--CCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeC
Q 026087            5 GQVITCKAAVAWEP---N--KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVG   79 (243)
Q Consensus         5 ~~~~~~~a~~~~~~---~--~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G   79 (243)
                      ..+++|||+++.++   +  ..++++++|.|+|++|||+|||++++||++|++++.|..+...+|.++|||++|+|+++|
T Consensus        18 ~~m~~MkA~~~~~~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG   97 (363)
T 4dvj_A           18 LYFQSMKAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWKVIGYDAAGIVSAVG   97 (363)
T ss_dssp             -CCCEEEEEEBSSCCCTTSTTSSEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCCC--CCSBCCCCCEEEEEEEEC
T ss_pred             hhhheeEEEEEeccCCCCCCceEEEeecCCCCCCCCEEEEEEEEEEeCHHHHHHHcCCCCCCCCCCcccceeEEEEEEeC
Confidence            35678999999876   2  238999999999999999999999999999999999987766789999999999999999


Q ss_pred             CCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccce
Q 026087           80 EGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS  159 (243)
Q Consensus        80 ~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  159 (243)
                      +++++|++||||+..+..                           . .+                  |+|+||+++|++.
T Consensus        98 ~~v~~~~vGdrV~~~~~~---------------------------~-~~------------------G~~aey~~v~~~~  131 (363)
T 4dvj_A           98 PDVTLFRPGDEVFYAGSI---------------------------I-RP------------------GTNAEFHLVDERI  131 (363)
T ss_dssp             TTCCSCCTTCEEEECCCT---------------------------T-SC------------------CSCBSEEEEEGGG
T ss_pred             CCCCCCCCCCEEEEccCC---------------------------C-CC------------------ccceEEEEeCHHH
Confidence            999999999999853210                           0 22                  3999999999999


Q ss_pred             eEEcCCCCChhhhhhcccccchhhhhhhhcCCCC-----CCCEEEEEc-CCHHHHHHHHHHHHc-CCCEEEEEcCChhHH
Q 026087          160 VAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVE-----PGSIVAVFG-LGTVGLAVAEGAKAA-GASRVIGIDIDPKKF  232 (243)
Q Consensus       160 ~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~-----~g~~vlV~G-~g~~G~~a~~~a~~~-G~~~vi~~~~~~~~~  232 (243)
                      ++++|+++++++||++++++.|||+++.+..+++     +|++|||+| +|++|++++|+|+.+ |+ +|++++++++|+
T Consensus       132 ~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~-~Vi~~~~~~~~~  210 (363)
T 4dvj_A          132 VGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDL-TVIATASRPETQ  210 (363)
T ss_dssp             CEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCS-EEEEECSSHHHH
T ss_pred             eeECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCC-EEEEEeCCHHHH
Confidence            9999999999999999999999999988888888     899999998 599999999999985 77 999999999999


Q ss_pred             HHHHHhcccC
Q 026087          233 DRVLNALAMS  242 (243)
Q Consensus       233 ~~~~~~Ga~~  242 (243)
                      ++++++|++.
T Consensus       211 ~~~~~lGad~  220 (363)
T 4dvj_A          211 EWVKSLGAHH  220 (363)
T ss_dssp             HHHHHTTCSE
T ss_pred             HHHHHcCCCE
Confidence            9999999974

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=1.9e-37  Score=270.79  Aligned_cols=186  Identities=22%  Similarity=0.239  Sum_probs=168.0

Q ss_pred             cceeEEEEecCC-----CCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCC
Q 026087            8 ITCKAAVAWEPN-----KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV   82 (243)
Q Consensus         8 ~~~~a~~~~~~~-----~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~   82 (243)
                      |+|||+++.+++     +.++++++|.|+|++|||+|||++++||++|++++.|.  ...+|.++|||++|+|+++|+++
T Consensus         1 m~MkA~~~~~~G~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~--~~~~p~i~G~e~~G~V~~vG~~v   78 (346)
T 3fbg_A            1 MSLKAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMD--VSKAPRVLGFDAIGVVESVGNEV   78 (346)
T ss_dssp             -CEEEEEBSSCCCGGGCCCCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHTTSC--CSSSCBCCCCCEEEEEEEECTTC
T ss_pred             CCcEEEEEEeccccCCCceeEeccccCCCCCCCEEEEEEEEEEcCHHHHHHHhCC--CCCCCcCcCCccEEEEEEeCCCC
Confidence            579999999876     34999999999999999999999999999999999887  34688999999999999999999


Q ss_pred             CcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEE
Q 026087           83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK  162 (243)
Q Consensus        83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  162 (243)
                      ++|++||||+....                            ...+                  |+|+||+++|++.+++
T Consensus        79 ~~~~~GdrV~~~~~----------------------------~~~~------------------G~~aey~~v~~~~~~~  112 (346)
T 3fbg_A           79 TMFNQGDIVYYSGS----------------------------PDQN------------------GSNAEYQLINERLVAK  112 (346)
T ss_dssp             CSCCTTCEEEECCC----------------------------TTSC------------------CSSBSEEEEEGGGEEE
T ss_pred             CcCCCCCEEEEcCC----------------------------CCCC------------------cceeEEEEEChHHeEE
Confidence            99999999985321                            0022                  3999999999999999


Q ss_pred             cCCCCChhhhhhcccccchhhhhhhhcCCCC------CCCEEEEEc-CCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVE------PGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       163 lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~------~g~~vlV~G-~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      +|+++++++|+++++++.|||+++.+..+++      +|++|||+| +|++|++++|+|+.+|+ +|++++++++|++++
T Consensus       113 iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~  191 (346)
T 3fbg_A          113 APKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWT  191 (346)
T ss_dssp             CCSSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHH
T ss_pred             CCCCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            9999999999999999999999988888888      999999995 59999999999999999 999999999999999


Q ss_pred             HHhcccC
Q 026087          236 LNALAMS  242 (243)
Q Consensus       236 ~~~Ga~~  242 (243)
                      +++|++.
T Consensus       192 ~~lGa~~  198 (346)
T 3fbg_A          192 KKMGADI  198 (346)
T ss_dssp             HHHTCSE
T ss_pred             HhcCCcE
Confidence            9999874

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=2.2e-37  Score=270.07  Aligned_cols=187  Identities=25%  Similarity=0.245  Sum_probs=172.1

Q ss_pred             CcccceeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCC
Q 026087            5 GQVITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEG   81 (243)
Q Consensus         5 ~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~   81 (243)
                      +.|.+|||+++.+++.+  +++++++.|+|++|||+|||++++||++|++++.|.++. .++|.++|||++|+|+++|++
T Consensus        17 ~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~   96 (342)
T 4eye_A           17 QGPGSMKAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVPGIETAGVVRSAPEG   96 (342)
T ss_dssp             -CCCEEEEEEECSSSGGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSSSCCCSSBCCCSEEEEEEEECCTT
T ss_pred             cCCcceEEEEEecCCCCceeEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCccceeEEEEEEEECCC
Confidence            45688999999987766  999999999999999999999999999999999998753 378999999999999999999


Q ss_pred             CCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeE
Q 026087           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA  161 (243)
Q Consensus        82 ~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  161 (243)
                      ++ |++||||+...                               .+                  |+|+||+.++.+.++
T Consensus        97 v~-~~vGDrV~~~~-------------------------------~~------------------G~~aey~~v~~~~~~  126 (342)
T 4eye_A           97 SG-IKPGDRVMAFN-------------------------------FI------------------GGYAERVAVAPSNIL  126 (342)
T ss_dssp             SS-CCTTCEEEEEC-------------------------------SS------------------CCSBSEEEECGGGEE
T ss_pred             CC-CCCCCEEEEec-------------------------------CC------------------CcceEEEEEcHHHeE
Confidence            99 99999998542                               12                  389999999999999


Q ss_pred             EcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       162 ~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      ++|+++++++|++++.++.|||+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|++++++++++++++++|+
T Consensus       127 ~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga  205 (342)
T 4eye_A          127 PTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSVGA  205 (342)
T ss_dssp             ECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCC
Confidence            999999999999999999999999888999999999999998 9999999999999999 99999999999999999998


Q ss_pred             cC
Q 026087          241 MS  242 (243)
Q Consensus       241 ~~  242 (243)
                      +.
T Consensus       206 ~~  207 (342)
T 4eye_A          206 DI  207 (342)
T ss_dssp             SE
T ss_pred             cE
Confidence            74

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=1.2e-37  Score=271.44  Aligned_cols=185  Identities=21%  Similarity=0.222  Sum_probs=171.6

Q ss_pred             cceeEEEEecCCCC---eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCC
Q 026087            8 ITCKAAVAWEPNKP---LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVT   83 (243)
Q Consensus         8 ~~~~a~~~~~~~~~---~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~   83 (243)
                      ++|||+++.+++.+   ++++++|.|+|++|||+|||++++||++|++++.|.++. .++|.++|||++|+|+++|++++
T Consensus         3 ~~mka~~~~~~g~p~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~v~   82 (340)
T 3gms_A            3 LHGKLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAFVS   82 (340)
T ss_dssp             CEEEEEEESSCSCHHHHEEEEEEECCCCCTTEEEEEEEEEECCHHHHGGGGTTTTTTSCSSBCCCSCCEEEEEEECTTSC
T ss_pred             cccEEEEEecCCCchheEEEEecCCCCCCCCEEEEEEEEecCCHHHHHHhcCCCCCCCCCCCcCCcceEEEEEEeCCCCC
Confidence            58999999999987   899999999999999999999999999999999998754 47899999999999999999999


Q ss_pred             cCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEc
Q 026087           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (243)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l  163 (243)
                      +|++||||+...                               .                  .|+|+||+++|++.++++
T Consensus        83 ~~~vGdrV~~~~-------------------------------~------------------~G~~aey~~v~~~~~~~v  113 (340)
T 3gms_A           83 RELIGKRVLPLR-------------------------------G------------------EGTWQEYVKTSADFVVPI  113 (340)
T ss_dssp             GGGTTCEEEECS-------------------------------S------------------SCSSBSEEEEEGGGEEEC
T ss_pred             CCCCCCEEEecC-------------------------------C------------------CccceeEEEcCHHHeEEC
Confidence            999999997421                               1                  238999999999999999


Q ss_pred             CCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      |+++++++|+++++...|+|+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|++++++++++++++++|++.
T Consensus       114 P~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lga~~  192 (340)
T 3gms_A          114 PDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAAY  192 (340)
T ss_dssp             CTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSE
T ss_pred             CCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhCCCcE
Confidence            9999999999999999999999889999999999999998 5999999999999999 9999999999999999999873

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=1.8e-37  Score=268.69  Aligned_cols=184  Identities=27%  Similarity=0.317  Sum_probs=170.7

Q ss_pred             eeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCC
Q 026087           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (243)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~   87 (243)
                      |||+++.+++.+  +++++++.|+|++|||+|||++++||++|++++.|.++..++|.++|||++|+|+++|+++++|++
T Consensus         2 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~~   81 (325)
T 3jyn_A            2 AKRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPSGLGAEGAGVVEAVGDEVTRFKV   81 (325)
T ss_dssp             EEEEEBSSCSSGGGCEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCCCEEEEEEEECTTCCSCCT
T ss_pred             cEEEEEecCCCcceeEEeecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCceeEEEEEEECCCCCCCCC
Confidence            899999998876  899999999999999999999999999999999998776678999999999999999999999999


Q ss_pred             CCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCC
Q 026087           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (243)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~  167 (243)
                      ||||.....                              .+                  |+|+||+.+|++.++++|+++
T Consensus        82 GdrV~~~~~------------------------------~~------------------G~~aey~~v~~~~~~~~P~~~  113 (325)
T 3jyn_A           82 GDRVAYGTG------------------------------PL------------------GAYSEVHVLPEANLVKLADSV  113 (325)
T ss_dssp             TCEEEESSS------------------------------SS------------------CCSBSEEEEEGGGEEECCTTS
T ss_pred             CCEEEEecC------------------------------CC------------------ccccceEEecHHHeEECCCCC
Confidence            999975321                              22                  389999999999999999999


Q ss_pred             ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++++|+++++...|+|+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|++++++++|+++++++|++.
T Consensus       114 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~  188 (325)
T 3jyn_A          114 SFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGAWE  188 (325)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSE
T ss_pred             CHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCE
Confidence            999999999999999998888889999999999995 9999999999999999 9999999999999999999863

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=2.8e-37  Score=268.35  Aligned_cols=189  Identities=27%  Similarity=0.273  Sum_probs=170.7

Q ss_pred             CCCCCcccceeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEe
Q 026087            1 MSTEGQVITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESV   78 (243)
Q Consensus         1 m~~~~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~   78 (243)
                      |++ ..+.+|||+++.+++.+  +++++++.|+|++|||+|||++++||++|++++.|.++. ++|.++|||++|+|+++
T Consensus         1 M~~-~~p~~mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~-~~P~i~G~e~~G~V~~v   78 (334)
T 3qwb_A            1 MKC-TIPEQQKVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPC-EKPYVLGREASGTVVAK   78 (334)
T ss_dssp             -----CCSEEEEEEESSSSSGGGEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHHTSSCC-CSSEECCSEEEEEEEEE
T ss_pred             CCC-CCchheEEEEEecCCCCceeEEEeccCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCC-CCCCccccceEEEEEEE
Confidence            543 36788999999998876  899999999999999999999999999999999997763 58999999999999999


Q ss_pred             CCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEec-c
Q 026087           79 GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH-D  157 (243)
Q Consensus        79 G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~-~  157 (243)
                      |+++++|++||||+...                                +                  |+|+||+.++ .
T Consensus        79 G~~v~~~~~GdrV~~~~--------------------------------~------------------G~~aey~~v~~~  108 (334)
T 3qwb_A           79 GKGVTNFEVGDQVAYIS--------------------------------N------------------STFAQYSKISSQ  108 (334)
T ss_dssp             CTTCCSCCTTCEEEEEC--------------------------------S------------------SCSBSEEEEETT
T ss_pred             CCCCCCCCCCCEEEEee--------------------------------C------------------CcceEEEEecCc
Confidence            99999999999997531                                2                  3899999999 9


Q ss_pred             ceeEEcCCCCChhh---hhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHH
Q 026087          158 VSVAKIDPQAPLDK---VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (243)
Q Consensus       158 ~~~~~lp~~~~~~~---aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~  233 (243)
                      +.++++|+++++++   ++++.+...|+|+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|++++++++|++
T Consensus       109 ~~~~~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~  187 (334)
T 3qwb_A          109 GPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLK  187 (334)
T ss_dssp             SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHH
T ss_pred             ceEEECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            99999999999999   88888899999998888889999999999995 9999999999999999 9999999999999


Q ss_pred             HHHHhcccC
Q 026087          234 RVLNALAMS  242 (243)
Q Consensus       234 ~~~~~Ga~~  242 (243)
                      +++++|++.
T Consensus       188 ~~~~~ga~~  196 (334)
T 3qwb_A          188 IAKEYGAEY  196 (334)
T ss_dssp             HHHHTTCSE
T ss_pred             HHHHcCCcE
Confidence            999999873

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=100.00  E-value=2.5e-37  Score=272.45  Aligned_cols=191  Identities=20%  Similarity=0.166  Sum_probs=164.1

Q ss_pred             CcccceeEEEEecCCCCeEEE-eeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCC
Q 026087            5 GQVITCKAAVAWEPNKPLVIE-DVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT   83 (243)
Q Consensus         5 ~~~~~~~a~~~~~~~~~~~~~-~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~   83 (243)
                      +.+.+|||+++.+++. ++++ +++.|+|++|||+|||++++||++|++++.+.   ..+|.++|||++|+|+++|++++
T Consensus         7 ~~p~~mkA~v~~~~~~-l~~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~---~~~p~v~G~e~~G~V~~vG~~v~   82 (371)
T 3gqv_A            7 IPPPQQTALTVNDHDE-VTVWNAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQF---ATPWAFLGTDYAGTVVAVGSDVT   82 (371)
T ss_dssp             CCCSCEEEEEECTTSC-EEEEEEECCCCCCTTSEEEEEEEEECCGGGGC--------CCTTSCCCSEEEEEEEEECTTCC
T ss_pred             CCchhceeEEEcCCCc-eEEeccCCCCCCCCCEEEEEEEEEEcCHHHHHHhhcC---CCCCccCccccEEEEEEeCCCCC
Confidence            3557899999999976 9998 99999999999999999999999999988763   24689999999999999999999


Q ss_pred             cCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEc
Q 026087           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (243)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l  163 (243)
                      +|++||||..       .|..|..+..                .+                  |+|+||+++|.+.++++
T Consensus        83 ~~~~GdrV~~-------~~~~~~~~~~----------------~~------------------G~~aey~~v~~~~~~~~  121 (371)
T 3gqv_A           83 HIQVGDRVYG-------AQNEMCPRTP----------------DQ------------------GAFSQYTVTRGRVWAKI  121 (371)
T ss_dssp             SCCTTCEEEE-------ECCTTCTTCT----------------TC------------------CSSBSEEECCTTCEEEC
T ss_pred             CCCCCCEEEE-------eccCCCCCCC----------------CC------------------CcCcCeEEEchhheEEC
Confidence            9999999953       4455543221                22                  39999999999999999


Q ss_pred             CCCCChhhhhhcccccchhhhhhhhc-CCC-----------CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          164 DPQAPLDKVCLLGCGVPTGLGAVWNT-AKV-----------EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~~~~~-~~~-----------~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      |+++++++|+++++++.|||+++.+. .++           ++|++|||+|+ |.+|++++|+|+.+|+ +|+++. +++
T Consensus       122 P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~~  199 (371)
T 3gqv_A          122 PKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SPH  199 (371)
T ss_dssp             CTTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CGG
T ss_pred             CCCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCccccccccCCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CHH
Confidence            99999999999999999999988776 443           89999999998 9999999999999999 899885 789


Q ss_pred             HHHHHHHhcccC
Q 026087          231 KFDRVLNALAMS  242 (243)
Q Consensus       231 ~~~~~~~~Ga~~  242 (243)
                      |+++++++|++.
T Consensus       200 ~~~~~~~lGa~~  211 (371)
T 3gqv_A          200 NFDLAKSRGAEE  211 (371)
T ss_dssp             GHHHHHHTTCSE
T ss_pred             HHHHHHHcCCcE
Confidence            999999999974

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=8.1e-37  Score=267.86  Aligned_cols=188  Identities=26%  Similarity=0.338  Sum_probs=166.1

Q ss_pred             cccceeEEEEecCCCC---eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCC-CCCeeeeeceEEEEEEeCCC
Q 026087            6 QVITCKAAVAWEPNKP---LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVGEG   81 (243)
Q Consensus         6 ~~~~~~a~~~~~~~~~---~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~-~~p~~~G~e~vG~V~~~G~~   81 (243)
                      ++.+|||+++.+++.+   ++++++|.|+|++|||+|||++++||++|++++.|.++.. .+|.++|||++|+|+++|++
T Consensus        23 m~~~mka~~~~~~g~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~~  102 (357)
T 1zsy_A           23 MPARVRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAVGSN  102 (357)
T ss_dssp             CCCCEEEEEESSSSCHHHHEEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSEECCSCCEEEEEEECTT
T ss_pred             CchhhEEEEEecCCCccceEEEeeccCCCCCCCEEEEEEEECCCCHHHhhHhcCCCCCCCCCCccccceEEEEEEEeCCC
Confidence            4467999999999875   8899999999999999999999999999999999876543 57999999999999999999


Q ss_pred             CCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeE
Q 026087           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA  161 (243)
Q Consensus        82 ~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  161 (243)
                      +++|++||||+..+.                              .                  .|+|+||++++++.++
T Consensus       103 v~~~~vGdrV~~~~~------------------------------~------------------~G~~aey~~v~~~~~~  134 (357)
T 1zsy_A          103 VTGLKPGDWVIPANA------------------------------G------------------LGTWRTEAVFSEEALI  134 (357)
T ss_dssp             CCSCCTTCEEEESSS------------------------------C------------------SCCSBSEEEEEGGGEE
T ss_pred             CCCCCCCCEEEEcCC------------------------------C------------------CccceeEEecCHHHcE
Confidence            999999999985421                              1                  2389999999999999


Q ss_pred             EcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCh----hHHHHHH
Q 026087          162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP----KKFDRVL  236 (243)
Q Consensus       162 ~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~----~~~~~~~  236 (243)
                      ++|+++++++|+++++++.|||+++.+..++++|++|||+|+ |++|++++|+||.+|+ +++++.+++    +++++++
T Consensus       135 ~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~  213 (357)
T 1zsy_A          135 QVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGL-RTINVVRDRPDIQKLSDRLK  213 (357)
T ss_dssp             EECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEECCCSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCC-EEEEEecCccchHHHHHHHH
Confidence            999999999999999889999998888889999999999998 9999999999999999 666665432    3578899


Q ss_pred             HhcccC
Q 026087          237 NALAMS  242 (243)
Q Consensus       237 ~~Ga~~  242 (243)
                      ++|++.
T Consensus       214 ~lGa~~  219 (357)
T 1zsy_A          214 SLGAEH  219 (357)
T ss_dssp             HTTCSE
T ss_pred             hcCCcE
Confidence            999874

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.8e-36  Score=265.12  Aligned_cols=186  Identities=26%  Similarity=0.385  Sum_probs=168.4

Q ss_pred             ccceeEEEEecCCCC--eEE-EeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCC
Q 026087            7 VITCKAAVAWEPNKP--LVI-EDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGV   82 (243)
Q Consensus         7 ~~~~~a~~~~~~~~~--~~~-~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~   82 (243)
                      +.+|||+++.+++.+  +++ ++++.|+|++|||+|||++++||++|++++.|.++. ..+|.++|||++|+|+++|+++
T Consensus        27 ~~~Mka~~~~~~g~~~~l~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~~v  106 (351)
T 1yb5_A           27 QKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNA  106 (351)
T ss_dssp             -CEEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTC
T ss_pred             cceEEEEEEccCCCcceeEEeeecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcCCceeEEEEEEECCCC
Confidence            456999999987754  888 899999999999999999999999999999987643 3689999999999999999999


Q ss_pred             CcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEE
Q 026087           83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK  162 (243)
Q Consensus        83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  162 (243)
                      ++|++||||+..+.                              .+                  |+|+||+++|++.+++
T Consensus       107 ~~~~vGdrV~~~~~------------------------------~~------------------G~~aey~~v~~~~~~~  138 (351)
T 1yb5_A          107 SAFKKGDRVFTSST------------------------------IS------------------GGYAEYALAADHTVYK  138 (351)
T ss_dssp             TTCCTTCEEEESCC------------------------------SS------------------CSSBSEEEEEGGGEEE
T ss_pred             CCCCCCCEEEEeCC------------------------------CC------------------CcceeEEEECHHHeEE
Confidence            99999999975421                              12                  3899999999999999


Q ss_pred             cCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       163 lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +|+++++++||++++++.|||+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|++++++++++++++++|++
T Consensus       139 ~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~  217 (351)
T 1yb5_A          139 LPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAH  217 (351)
T ss_dssp             CCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCS
T ss_pred             CCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHcCCC
Confidence            99999999999999999999999877889999999999997 9999999999999999 899999999999999999986

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=1.8e-37  Score=271.09  Aligned_cols=193  Identities=16%  Similarity=0.134  Sum_probs=164.0

Q ss_pred             CCCCCcccceeEEEEe--c---CCCCeEEEee---------ccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCe
Q 026087            1 MSTEGQVITCKAAVAW--E---PNKPLVIEDV---------QVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPC   65 (243)
Q Consensus         1 m~~~~~~~~~~a~~~~--~---~~~~~~~~~~---------~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~   65 (243)
                      ||++..+.+|||+++.  +   ..+.++++++         +.|+|++|||+|||++++||++|++++.|.++. .++|.
T Consensus         2 Ms~m~~p~~mka~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~   81 (349)
T 3pi7_A            2 MSPMTIPSEMKALLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVKGR   81 (349)
T ss_dssp             ---CCCCSEEEEEEECSCBSCSSCCCSCCCCSTTTEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSSCBCTTS
T ss_pred             CCCCCCchhheEEEEEccccCCCcccceEEEeecccccccCCCCCCCCCeEEEEEEEecCCHHHHHHhcccCCCCCCCCC
Confidence            8877788899999999  2   2334888888         999999999999999999999999999997653 36899


Q ss_pred             eeeeceEEEEEEeCCCC-CcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeec
Q 026087           66 ILGHEAAGIVESVGEGV-TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFM  144 (243)
Q Consensus        66 ~~G~e~vG~V~~~G~~~-~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~  144 (243)
                      ++|||++|+|+++|+++ ++|++||||++...                           .. .                 
T Consensus        82 v~G~E~~G~V~~vG~~v~~~~~vGdrV~~~~g---------------------------~~-~-----------------  116 (349)
T 3pi7_A           82 PAGFEGVGTIVAGGDEPYAKSLVGKRVAFATG---------------------------LS-N-----------------  116 (349)
T ss_dssp             BCCSEEEEEEEEECSSHHHHHHTTCEEEEECT---------------------------TS-S-----------------
T ss_pred             CccceEEEEEEEECCCccCCCCCCCEEEEecc---------------------------CC-C-----------------
Confidence            99999999999999999 99999999986531                           00 2                 


Q ss_pred             CCcceeeEEEeccceeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCCC-CEEEEEc-CCHHHHHHHHHHHHcCCCEE
Q 026087          145 GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPG-SIVAVFG-LGTVGLAVAEGAKAAGASRV  222 (243)
Q Consensus       145 ~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g-~~vlV~G-~g~~G~~a~~~a~~~G~~~v  222 (243)
                       .|+|+||+++|++.++++|+++++++||++++...|||+ +++..+ ++| ++|||+| +|++|++++|+|+.+|+ +|
T Consensus       117 -~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~-~~~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~Ga-~V  192 (349)
T 3pi7_A          117 -WGSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIA-MFDIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEGF-RP  192 (349)
T ss_dssp             -CCSSBSEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHH-HHHHHH-HHCCSEEEESSTTSHHHHHHHHHHHHHTC-EE
T ss_pred             -CccceeeEeechHHeEECCCCCCHHHHhhccccHHHHHH-HHHHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EE
Confidence             249999999999999999999999999999999999996 455555 666 6888885 49999999999999999 99


Q ss_pred             EEEcCChhHHHHHHHhcccC
Q 026087          223 IGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       223 i~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++++++++|+++++++|++.
T Consensus       193 i~~~~~~~~~~~~~~~Ga~~  212 (349)
T 3pi7_A          193 IVTVRRDEQIALLKDIGAAH  212 (349)
T ss_dssp             EEEESCGGGHHHHHHHTCSE
T ss_pred             EEEeCCHHHHHHHHHcCCCE
Confidence            99999999999999999874

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=1.8e-36  Score=266.05  Aligned_cols=187  Identities=20%  Similarity=0.205  Sum_probs=165.4

Q ss_pred             ccceeEEEEecCCCC---eEEEeeccCCCC--CCcEEEEEeEEecChhhHHhhcCCCCC-CCCC---------eeeeece
Q 026087            7 VITCKAAVAWEPNKP---LVIEDVQVAPPQ--AGEVRIKILFTALCHTDAYTWSGKDPE-GLFP---------CILGHEA   71 (243)
Q Consensus         7 ~~~~~a~~~~~~~~~---~~~~~~~~p~~~--~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p---------~~~G~e~   71 (243)
                      |++|||+++.+++.+   +++++++.|.|.  +|||+|||++++||++|++++.|.++. ..+|         .++|||+
T Consensus         1 ~~~mka~~~~~~g~~~~~l~~~~~~~P~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~~~~~~~p~~i~G~E~   80 (364)
T 1gu7_A            1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEG   80 (364)
T ss_dssp             CEEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCC
T ss_pred             CceEEEEEeccCCCchheeEEeeccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCCCCCCccccccCcccccCcee
Confidence            468999999999875   899999999887  999999999999999999999987653 2467         8999999


Q ss_pred             EEEEEEeCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceee
Q 026087           72 AGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQ  151 (243)
Q Consensus        72 vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~  151 (243)
                      +|+|+++|+++++|++||||++.+.                              .                  .|+|+|
T Consensus        81 ~G~V~~vG~~v~~~~vGdrV~~~~~------------------------------~------------------~G~~ae  112 (364)
T 1gu7_A           81 LFEVIKVGSNVSSLEAGDWVIPSHV------------------------------N------------------FGTWRT  112 (364)
T ss_dssp             EEEEEEECTTCCSCCTTCEEEESSS------------------------------C------------------CCCSBS
T ss_pred             EEEEEEeCCCCCcCCCCCEEEecCC------------------------------C------------------CCcchh
Confidence            9999999999999999999985421                              1                  238999


Q ss_pred             EEEeccceeEEcCC-----------CCChhhhhhcccccchhhhhhhhcCCCCCC-CEEEEEcC-CHHHHHHHHHHHHcC
Q 026087          152 YTVVHDVSVAKIDP-----------QAPLDKVCLLGCGVPTGLGAVWNTAKVEPG-SIVAVFGL-GTVGLAVAEGAKAAG  218 (243)
Q Consensus       152 ~~~~~~~~~~~lp~-----------~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g-~~vlV~G~-g~~G~~a~~~a~~~G  218 (243)
                      |++++++.++++|+           ++++++|+++.+++.|||+++.+..++++| ++|||+|+ |++|++++|+|+.+|
T Consensus       113 y~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~G  192 (364)
T 1gu7_A          113 HALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLN  192 (364)
T ss_dssp             EEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHT
T ss_pred             eEecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCC
Confidence            99999999999998           899999999999999999988777789999 99999998 999999999999999


Q ss_pred             CCEEEEEcCChhH----HHHHHHhcccC
Q 026087          219 ASRVIGIDIDPKK----FDRVLNALAMS  242 (243)
Q Consensus       219 ~~~vi~~~~~~~~----~~~~~~~Ga~~  242 (243)
                      + ++|++.+++++    .++++++|++.
T Consensus       193 a-~vi~~~~~~~~~~~~~~~~~~lGa~~  219 (364)
T 1gu7_A          193 F-NSISVIRDRPNLDEVVASLKELGATQ  219 (364)
T ss_dssp             C-EEEEEECCCTTHHHHHHHHHHHTCSE
T ss_pred             C-EEEEEecCccccHHHHHHHHhcCCeE
Confidence            9 78888766554    67889999874

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=3.5e-36  Score=263.54  Aligned_cols=187  Identities=23%  Similarity=0.223  Sum_probs=167.8

Q ss_pred             CcccceeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCC-CCCeeeeeceEEEEEEeCCC
Q 026087            5 GQVITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVGEG   81 (243)
Q Consensus         5 ~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~-~~p~~~G~e~vG~V~~~G~~   81 (243)
                      ..+.+|||+++.+++.+  +++++++.|.|+++||+|||++++||++|++++.|.++.. .+|.++|||++|+|+++|++
T Consensus        18 ~~~~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E~~G~V~~vG~~   97 (354)
T 2j8z_A           18 LYFQSMLAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELGPG   97 (354)
T ss_dssp             ---CEEEEEEESSCSSGGGEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCCTTSCSSSCSEEEEEEEEECSC
T ss_pred             cchhheeEEEEccCCCccceEEeecCCCCCCCCeEEEEEEEeecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEECCC
Confidence            45678999999988753  8999999999999999999999999999999999876543 47899999999999999999


Q ss_pred             C-CcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEecccee
Q 026087           82 V-TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV  160 (243)
Q Consensus        82 ~-~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  160 (243)
                      + ++|++||||+...                               .+                  |+|+||+++|++.+
T Consensus        98 v~~~~~vGdrV~~~~-------------------------------~~------------------G~~aey~~v~~~~~  128 (354)
T 2j8z_A           98 CQGHWKIGDTAMALL-------------------------------PG------------------GGQAQYVTVPEGLL  128 (354)
T ss_dssp             C--CCCTTCEEEEEC-------------------------------SS------------------CCSBSEEEEEGGGE
T ss_pred             cCCCCCCCCEEEEec-------------------------------CC------------------CcceeEEEeCHHHc
Confidence            9 9999999997531                               11                  38999999999999


Q ss_pred             EEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhc
Q 026087          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNAL  239 (243)
Q Consensus       161 ~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~G  239 (243)
                      +++|+++++++||+++.++.|||+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|+++++++++++.++++|
T Consensus       129 ~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~g  207 (354)
T 2j8z_A          129 MPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKLG  207 (354)
T ss_dssp             EECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT
T ss_pred             EECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcC
Confidence            9999999999999999999999999888899999999999985 9999999999999999 8999999999999999999


Q ss_pred             cc
Q 026087          240 AM  241 (243)
Q Consensus       240 a~  241 (243)
                      ++
T Consensus       208 ~~  209 (354)
T 2j8z_A          208 AA  209 (354)
T ss_dssp             CS
T ss_pred             Cc
Confidence            86

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.7e-36  Score=263.75  Aligned_cols=184  Identities=22%  Similarity=0.272  Sum_probs=166.5

Q ss_pred             cceeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCc
Q 026087            8 ITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTE   84 (243)
Q Consensus         8 ~~~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~   84 (243)
                      |+|||+++.+++.+  +++++++.|+|++|||+|||++++||++|++++.|.++. ..+|.++|||++|+|+++|+++++
T Consensus         2 m~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~~   81 (349)
T 4a27_A            2 MEMRAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKG   81 (349)
T ss_dssp             CCEEEEEECSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECTTCCS
T ss_pred             ceeEEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCcCCCCCCCccccceeEEEEEEeCCCCCC
Confidence            68999999998854  999999999999999999999999999999999998653 478999999999999999999999


Q ss_pred             CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (243)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp  164 (243)
                      |++||||+...                               .+                  |+|+||+.+|.+.++++|
T Consensus        82 ~~~GdrV~~~~-------------------------------~~------------------G~~aey~~v~~~~~~~iP  112 (349)
T 4a27_A           82 YEIGDRVMAFV-------------------------------NY------------------NAWAEVVCTPVEFVYKIP  112 (349)
T ss_dssp             CCTTCEEEEEC-------------------------------SS------------------CCSBSEEEEEGGGEEECC
T ss_pred             CCCCCEEEEec-------------------------------CC------------------CcceEEEEecHHHeEECC
Confidence            99999997542                               12                  389999999999999999


Q ss_pred             CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++++++++++++++.|||+++.+..++++|++|||+|+ |.+|++++|+|+.+|..+|++++ +++|.+.++ +|++.
T Consensus       113 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-~ga~~  189 (349)
T 4a27_A          113 DDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-DSVTH  189 (349)
T ss_dssp             TTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-GGSSE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-cCCcE
Confidence            999999999999999999999888899999999999998 99999999999999754898887 667888887 88864

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=100.00  E-value=1.7e-35  Score=261.08  Aligned_cols=190  Identities=22%  Similarity=0.209  Sum_probs=166.2

Q ss_pred             CcccceeEEEEecCCCC--eEE-EeeccCCC-CCCcEEEEEeEEecChhhHHhhcCCCC-------------C--CCCCe
Q 026087            5 GQVITCKAAVAWEPNKP--LVI-EDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDP-------------E--GLFPC   65 (243)
Q Consensus         5 ~~~~~~~a~~~~~~~~~--~~~-~~~~~p~~-~~~evlVkv~a~~i~~~D~~~~~g~~~-------------~--~~~p~   65 (243)
                      ..+.+|||+++.+++.+  +++ +++|.|.| ++|||+|||++++||++|++++.|..+             .  ..+|.
T Consensus        17 ~~~~~mka~~~~~~g~~~~l~~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~~~~~~~~P~   96 (375)
T 2vn8_A           17 NLYFQSMAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPL   96 (375)
T ss_dssp             -CCCCEEEEEBSSCCSGGGCEEEEEECCCCCCSTTEEEEEEEEEEECHHHHHHHTTTTHHHHHHHHCTTCCSCTTTTCSB
T ss_pred             ccCccceeEEeccCCCccceEEeccccCCCCCCCCEEEEEEEEEEcCHHHHHHhccCccccccccccccccccccccCCc
Confidence            34567999999988754  888 99999985 999999999999999999999988531             1  23789


Q ss_pred             eeeeceEEEEEEeCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecC
Q 026087           66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMG  145 (243)
Q Consensus        66 ~~G~e~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  145 (243)
                      ++|||++|+|+++|+++++|++||||+..+..                           . .+                 
T Consensus        97 v~G~E~~G~V~~vG~~V~~~~vGDrV~~~~~~---------------------------~-~~-----------------  131 (375)
T 2vn8_A           97 TLGRDVSGVVMECGLDVKYFKPGDEVWAAVPP---------------------------W-KQ-----------------  131 (375)
T ss_dssp             CCCCEEEEEEEEECTTCCSCCTTCEEEEECCT---------------------------T-SC-----------------
T ss_pred             ccceeeeEEEEEeCCCCCCCCCCCEEEEecCC---------------------------C-CC-----------------
Confidence            99999999999999999999999999865320                           0 12                 


Q ss_pred             CcceeeEEEeccceeEEcCCCCChhhhhhcccccchhhhhhhhcCC----CCCCCEEEEEcC-CHHHHHHHHHHHHcCCC
Q 026087          146 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK----VEPGSIVAVFGL-GTVGLAVAEGAKAAGAS  220 (243)
Q Consensus       146 ~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~----~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~  220 (243)
                       |+|+||++++++.++++|+++++++||++++++.|||+++.+..+    +++|++|||+|+ |++|++++|+|+.+|+ 
T Consensus       132 -G~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga-  209 (375)
T 2vn8_A          132 -GTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDA-  209 (375)
T ss_dssp             -CSSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTC-
T ss_pred             -ccceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCC-
Confidence             389999999999999999999999999999899999998877788    999999999995 9999999999999999 


Q ss_pred             EEEEEcCChhHHHHHHHhcccC
Q 026087          221 RVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       221 ~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +|++++ +++++++++++|++.
T Consensus       210 ~Vi~~~-~~~~~~~~~~lGa~~  230 (375)
T 2vn8_A          210 HVTAVC-SQDASELVRKLGADD  230 (375)
T ss_dssp             EEEEEE-CGGGHHHHHHTTCSE
T ss_pred             EEEEEe-ChHHHHHHHHcCCCE
Confidence            899987 678999999999874

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=4.4e-36  Score=259.59  Aligned_cols=187  Identities=18%  Similarity=0.200  Sum_probs=163.8

Q ss_pred             eeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (243)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~   86 (243)
                      |||+++.+++++  +++++++.|+|++|||+|||++++||++|++++.|.++. .++|.++|||++|+|+++|  +++|+
T Consensus         1 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~G--v~~~~   78 (324)
T 3nx4_A            1 MQALILEQQDGKTLASVQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIRHFPMIPGIDFAGTVHASE--DPRFH   78 (324)
T ss_dssp             CEEEEEEESSSSEEEEEEECCGGGSCCCSEEEEEEEEEECHHHHHHHHTCTTCCCSSSBCCCSEEEEEEEEES--STTCC
T ss_pred             CceEEEecCCCCceeeEeecCCCCCCCCEEEEEEEEEeCCHHHHhhhcCCCCCCCCCCccccceeEEEEEEeC--CCCCC
Confidence            799999999876  889999999999999999999999999999999998754 4789999999999999998  57899


Q ss_pred             CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (243)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  166 (243)
                      +||||++.+.   .                     .|.. .+                  |+|+||+.+|++.++++|++
T Consensus        79 vGdrV~~~~~---~---------------------~g~~-~~------------------G~~aey~~v~~~~~~~iP~~  115 (324)
T 3nx4_A           79 AGQEVLLTGW---G---------------------VGEN-HW------------------GGLAERARVKGDWLVALPAG  115 (324)
T ss_dssp             TTCEEEEECT---T---------------------BTTT-BC------------------CSSBSEEEECGGGCEECCTT
T ss_pred             CCCEEEEccc---c---------------------cCCC-CC------------------CceeeEEecCHHHcEECCCC
Confidence            9999987531   0                     1111 22                  39999999999999999999


Q ss_pred             CChhhhhhcccccchhhhhhh--hcCCCCCCC-EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          167 APLDKVCLLGCGVPTGLGAVW--NTAKVEPGS-IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~--~~~~~~~g~-~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++++|+++++++.|||.++.  ...++++++ +|||+|+ |++|++++|+|+.+|+ +|++++++++|+++++++|++.
T Consensus       116 ~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~  194 (324)
T 3nx4_A          116 LSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSLGANR  194 (324)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCE
Confidence            999999999999999998875  345566633 4999998 9999999999999999 8999999999999999999874

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1e-35  Score=257.72  Aligned_cols=184  Identities=25%  Similarity=0.290  Sum_probs=166.1

Q ss_pred             ceeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087            9 TCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (243)
Q Consensus         9 ~~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~   86 (243)
                      +|||+++.+++.+  +++++++.|+|++|||+|||.+++||++|++++.|.++...+|.++|||++|+|+++|+++++|+
T Consensus         1 ~Mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   80 (327)
T 1qor_A            1 MATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIK   80 (327)
T ss_dssp             -CEEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCC
T ss_pred             CcEEEEEcCCCChhheEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCCCceeEEEEEEECCCCCCCC
Confidence            3899999987754  89999999999999999999999999999999998775446899999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (243)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  166 (243)
                      +||||. ..    +.                         .+                  |+|+||+++|++.++++|++
T Consensus        81 ~GdrV~-~~----g~-------------------------~~------------------G~~aey~~v~~~~~~~iP~~  112 (327)
T 1qor_A           81 AGDRVV-YA----QS-------------------------AL------------------GAYSSVHNIIADKAAILPAA  112 (327)
T ss_dssp             TTCEEE-ES----CC-------------------------SS------------------CCSBSEEEEEGGGEEECCTT
T ss_pred             CCCEEE-EC----CC-------------------------CC------------------ceeeeEEEecHHHcEECCCC
Confidence            999994 21    00                         11                  38999999999999999999


Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +++++|++++.++.|||+++.+..++++|++|||+|+ |++|++++|+++..|+ +|+++++++++++.++++|++
T Consensus       113 l~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~g~~  187 (327)
T 1qor_A          113 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAW  187 (327)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCS
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCC
Confidence            9999999999999999998877889999999999995 9999999999999999 999999999999999999876

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=1.3e-35  Score=257.71  Aligned_cols=183  Identities=29%  Similarity=0.374  Sum_probs=162.5

Q ss_pred             eeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCC--CC-CCCCeeeeeceEEEEEEeCCCCCc
Q 026087           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD--PE-GLFPCILGHEAAGIVESVGEGVTE   84 (243)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~--~~-~~~p~~~G~e~vG~V~~~G~~~~~   84 (243)
                      |||+++.+++.+  ++++++|.|+|++|||+|||.+++||++|++++.|.+  .. ..+|.++|||++|+|+++|+++++
T Consensus         2 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~   81 (333)
T 1wly_A            2 VMAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTD   81 (333)
T ss_dssp             CEEEEESSCSSGGGEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTCCS
T ss_pred             cEEEEEcccCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCCCC
Confidence            899999987754  8999999999999999999999999999999999866  22 357999999999999999999999


Q ss_pred             CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (243)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp  164 (243)
                      |++||||...+.                              .+                  |+|+||+++|++.++++|
T Consensus        82 ~~~GdrV~~~~~------------------------------~~------------------G~~aey~~v~~~~~~~iP  113 (333)
T 1wly_A           82 FTVGERVCTCLP------------------------------PL------------------GAYSQERLYPAEKLIKVP  113 (333)
T ss_dssp             CCTTCEEEECSS------------------------------SC------------------CCSBSEEEEEGGGCEECC
T ss_pred             CCCCCEEEEecC------------------------------CC------------------CcceeEEEecHHHcEeCC
Confidence            999999964321                              01                  389999999999999999


Q ss_pred             CCCChhh--hhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          165 PQAPLDK--VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       165 ~~~~~~~--aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +++++++  |++++.++.|||+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|+++++++++++.++++|++
T Consensus       114 ~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~g~~  192 (333)
T 1wly_A          114 KDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKLGCH  192 (333)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCS
T ss_pred             CCCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCC
Confidence            9999999  89999999999998877889999999999997 9999999999999999 999999999999999999876

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=100.00  E-value=1.6e-34  Score=253.83  Aligned_cols=184  Identities=18%  Similarity=0.155  Sum_probs=165.0

Q ss_pred             cccceeEEEEecCCC----CeEE-EeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeC
Q 026087            6 QVITCKAAVAWEPNK----PLVI-EDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVG   79 (243)
Q Consensus         6 ~~~~~~a~~~~~~~~----~~~~-~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G   79 (243)
                      .+.+|||+++.+++.    .+++ +++|.|+|++|||+|||++++||++|++++.|.++. .++|.++|||++|+|+++|
T Consensus        20 ~~~~MkA~~~~~~g~~~~~~l~~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~i~G~E~~G~V~~vG   99 (362)
T 2c0c_A           20 FQSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALG   99 (362)
T ss_dssp             HCCEEEEEEECSCCSSHHHHEEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHTTTTCTTCCSCEECCSEEEEEEEEEC
T ss_pred             chhhceEEEEeecCCCccceeEEEeecCCCCCCCCeEEEEEEEeccCHHHHHHhcCCCCCCCCCCCCCCceeEEEEEEEC
Confidence            346899999999874    3889 999999999999999999999999999999987643 4689999999999999999


Q ss_pred             CCCC-cCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccc
Q 026087           80 EGVT-EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV  158 (243)
Q Consensus        80 ~~~~-~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  158 (243)
                      ++++ +|++||||+...                                +                  |+|+||+++|++
T Consensus       100 ~~V~~~~~vGdrV~~~~--------------------------------~------------------G~~aey~~v~~~  129 (362)
T 2c0c_A          100 LSASARYTVGQAVAYMA--------------------------------P------------------GSFAEYTVVPAS  129 (362)
T ss_dssp             TTGGGTCCTTCEEEEEC--------------------------------S------------------CCSBSEEEEEGG
T ss_pred             CCccCCCCCCCEEEEcc--------------------------------C------------------CcceeEEEEcHH
Confidence            9999 999999997531                                1                  389999999999


Q ss_pred             eeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          159 SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       159 ~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      .++++|+. + .++++++.++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++++++++
T Consensus       130 ~~~~~P~~-~-~~aaal~~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~  206 (362)
T 2c0c_A          130 IATPVPSV-K-PEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKS  206 (362)
T ss_dssp             GCEECSSS-C-HHHHTTTTHHHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             HeEECCCC-c-hHhhcccchHHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH
Confidence            99999986 3 4677788899999999888889999999999995 9999999999999999 89999999999999999


Q ss_pred             hcccC
Q 026087          238 ALAMS  242 (243)
Q Consensus       238 ~Ga~~  242 (243)
                      +|++.
T Consensus       207 ~Ga~~  211 (362)
T 2c0c_A          207 LGCDR  211 (362)
T ss_dssp             TTCSE
T ss_pred             cCCcE
Confidence            99863

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=100.00  E-value=7.3e-35  Score=252.66  Aligned_cols=189  Identities=21%  Similarity=0.203  Sum_probs=163.5

Q ss_pred             cceeEEEEecCCC--CeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCc
Q 026087            8 ITCKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTE   84 (243)
Q Consensus         8 ~~~~a~~~~~~~~--~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~   84 (243)
                      .+|||+++.+++.  .++++++|.|+|++|||+|||++++||++|++++.|.++. ..+|.++|||++|+|+++  ++++
T Consensus         3 ~~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~~--~v~~   80 (330)
T 1tt7_A            3 TLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSS--NDPR   80 (330)
T ss_dssp             CEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEEC--SSTT
T ss_pred             CcceEEEEecCCCCcceeEeecCCCCCCCCEEEEEEEEEecCHHHHhhhcCCCCCcCCCCccccceEEEEEEEc--CCCC
Confidence            4799999998862  4899999999999999999999999999999999887543 357999999999999996  4678


Q ss_pred             CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (243)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp  164 (243)
                      |++||||++.+.                        .+|.. .                  .|+|+||+++|++.++++|
T Consensus        81 ~~vGdrV~~~~~------------------------~~g~~-~------------------~G~~aey~~v~~~~~~~iP  117 (330)
T 1tt7_A           81 FAEGDEVIATSY------------------------ELGVS-R------------------DGGLSEYASVPGDWLVPLP  117 (330)
T ss_dssp             CCTTCEEEEEST------------------------TBTTT-B------------------CCSSBSSEEECGGGEEECC
T ss_pred             CCCCCEEEEccc------------------------ccCCC-C------------------CccceeEEEecHHHeEECC
Confidence            999999986532                        01111 1                  2499999999999999999


Q ss_pred             CCCChhhhhhcccccchhhhhhh--hcCCCCCCC-EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          165 PQAPLDKVCLLGCGVPTGLGAVW--NTAKVEPGS-IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~--~~~~~~~g~-~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      +++++++|+++++++.|+|.++.  ...++++|+ +|||+|+ |++|++++|+|+.+|+ +|++++++++|+++++++|+
T Consensus       118 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa  196 (330)
T 1tt7_A          118 QNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGA  196 (330)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTC
T ss_pred             CCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCC
Confidence            99999999999988999998764  346788996 9999998 9999999999999999 79999999999999999998


Q ss_pred             cC
Q 026087          241 MS  242 (243)
Q Consensus       241 ~~  242 (243)
                      +.
T Consensus       197 ~~  198 (330)
T 1tt7_A          197 SE  198 (330)
T ss_dssp             SE
T ss_pred             cE
Confidence            74

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=7.4e-35  Score=252.42  Aligned_cols=188  Identities=18%  Similarity=0.207  Sum_probs=162.7

Q ss_pred             ceeEEEEecCCC--CeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcC
Q 026087            9 TCKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEV   85 (243)
Q Consensus         9 ~~~a~~~~~~~~--~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~   85 (243)
                      +|||+++.+++.  .++++++|.|+|++|||+|||++++||++|++++.|.++. ..+|.++|||++|+|++.  ++++|
T Consensus         3 ~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~--~v~~~   80 (328)
T 1xa0_A            3 AFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVSS--QHPRF   80 (328)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEEC--CSSSC
T ss_pred             cceEEEEecCCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHhhcCCCCCCCCCCcccCcceEEEEEec--CCCCC
Confidence            799999999874  3789999999999999999999999999999999886432 357899999999999995  56889


Q ss_pred             CCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCC
Q 026087           86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (243)
Q Consensus        86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~  165 (243)
                      ++||||++.+.                        .+|.. .                  .|+|+||+++|++.++++|+
T Consensus        81 ~vGdrV~~~~~------------------------~~g~~-~------------------~G~~aey~~v~~~~~~~~P~  117 (328)
T 1xa0_A           81 REGDEVIATGY------------------------EIGVT-H------------------FGGYSEYARLHGEWLVPLPK  117 (328)
T ss_dssp             CTTCEEEEEST------------------------TBTTT-B------------------CCSSBSEEEECGGGCEECCT
T ss_pred             CCCCEEEEccc------------------------cCCCC-C------------------CccceeEEEechHHeEECCC
Confidence            99999986531                        01111 1                  24999999999999999999


Q ss_pred             CCChhhhhhcccccchhhhhhh--hcCCCCCCC-EEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          166 QAPLDKVCLLGCGVPTGLGAVW--NTAKVEPGS-IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~~~--~~~~~~~g~-~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      ++++++|+++++++.|+|.++.  ...++++|+ +|||+|+ |++|++++|+|+.+|+ +|++++++++|+++++++|++
T Consensus       118 ~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa~  196 (328)
T 1xa0_A          118 GLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAK  196 (328)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCS
T ss_pred             CCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCc
Confidence            9999999999988999998764  346789997 9999998 9999999999999999 799999999999999999987


Q ss_pred             C
Q 026087          242 S  242 (243)
Q Consensus       242 ~  242 (243)
                      .
T Consensus       197 ~  197 (328)
T 1xa0_A          197 E  197 (328)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=100.00  E-value=5.4e-35  Score=258.27  Aligned_cols=184  Identities=18%  Similarity=0.182  Sum_probs=162.7

Q ss_pred             cccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC--------------------------
Q 026087            6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP--------------------------   59 (243)
Q Consensus         6 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~--------------------------   59 (243)
                      .+++|||++.......+++++++.|+|++|||||||++++||++|++++.|.++                          
T Consensus         4 ~~~~mka~v~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~~~~~~   83 (379)
T 3iup_A            4 SALQLRSRIKSSGELELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMRS   83 (379)
T ss_dssp             EEEEEEEEECTTSEEEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCHHHHHH
T ss_pred             chhhHHHHHhcCCCCceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhcCCccccccccccccccccccccCccccccc
Confidence            356899998865555599999999999999999999999999999999988521                          


Q ss_pred             ---CCCCCeeeeeceEEEEEEeCCCC-CcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCcccccc
Q 026087           60 ---EGLFPCILGHEAAGIVESVGEGV-TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSI  135 (243)
Q Consensus        60 ---~~~~p~~~G~e~vG~V~~~G~~~-~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~  135 (243)
                         ..++|.++|||++|+|+++|+++ ++|++||||+..+                                +       
T Consensus        84 ~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~~--------------------------------~-------  124 (379)
T 3iup_A           84 MAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIG--------------------------------G-------  124 (379)
T ss_dssp             HGGGTTEEEECCSCEEEEEEEECSSHHHHTTTTCEEEECC--------------------------------S-------
T ss_pred             cccccCCCccceeeeEEEEEEeCCCcccCCCCCCEEEecC--------------------------------C-------
Confidence               22578999999999999999999 8999999998532                                1       


Q ss_pred             CCcceeeecCCcceeeEEEeccceeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEE--cCCHHHHHHHHH
Q 026087          136 NGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF--GLGTVGLAVAEG  213 (243)
Q Consensus       136 ~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~--G~g~~G~~a~~~  213 (243)
                                 |+|+||+++|++.++++|+++++++|+++++...|||+++ +... ++|++|||+  |+|.+|++++|+
T Consensus       125 -----------G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~-~~~~-~~g~~vlV~gag~G~vG~~a~q~  191 (379)
T 3iup_A          125 -----------AMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMV-ETMR-LEGHSALVHTAAASNLGQMLNQI  191 (379)
T ss_dssp             -----------CCSBSEEEEEGGGEEECCTTCCHHHHTTSSHHHHHHHHHH-HHHH-HTTCSCEEESSTTSHHHHHHHHH
T ss_pred             -----------CcceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHH-HHhc-cCCCEEEEECCCCCHHHHHHHHH
Confidence                       3899999999999999999999999999999999999755 4444 899999999  459999999999


Q ss_pred             HHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          214 AKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       214 a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      |+.+|+ +|++++++++|+++++++|++.
T Consensus       192 a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~  219 (379)
T 3iup_A          192 CLKDGI-KLVNIVRKQEQADLLKAQGAVH  219 (379)
T ss_dssp             HHHHTC-CEEEEESSHHHHHHHHHTTCSC
T ss_pred             HHHCCC-EEEEEECCHHHHHHHHhCCCcE
Confidence            999999 8999999999999999999974

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=100.00  E-value=4.2e-33  Score=242.14  Aligned_cols=179  Identities=18%  Similarity=0.165  Sum_probs=158.2

Q ss_pred             cceeEEEEec------CCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeec----eEEEEEE
Q 026087            8 ITCKAAVAWE------PNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE----AAGIVES   77 (243)
Q Consensus         8 ~~~~a~~~~~------~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e----~vG~V~~   77 (243)
                      ++|||+++.+      ..+.++++++|.|+|++|||||||++++||++|+..+.+.... .+|.++|||    ++|+|++
T Consensus         6 ~~mka~v~~~~~~g~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~d~~~~~~~~~~-~~p~~~G~e~g~~~~G~V~~   84 (336)
T 4b7c_A            6 QINRQYQLAQRPSGLPGRDTFSFVETPLGEPAEGQILVKNEYLSLDPAMRGWMNDARSY-IPPVGIGEVMRALGVGKVLV   84 (336)
T ss_dssp             CEEEEEEECSCCSSSCCTTSEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHHSCSCCS-SCCCCTTSBCCCEEEEEEEE
T ss_pred             ccccEEEEEecCCCCCCCCceEEEeccCCCCCCCEEEEEEEEEEeCHHHHhhhhccccc-CCCCCCCcccCCceEEEEEe
Confidence            5799999986      1234999999999999999999999999999999988764332 456777777    7999999


Q ss_pred             eCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEecc
Q 026087           78 VGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD  157 (243)
Q Consensus        78 ~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  157 (243)
                        +++++|++||||+..                                                    |+|+||+++|+
T Consensus        85 --~~v~~~~vGdrV~~~----------------------------------------------------G~~aey~~v~~  110 (336)
T 4b7c_A           85 --SKHPGFQAGDYVNGA----------------------------------------------------LGVQDYFIGEP  110 (336)
T ss_dssp             --ECSTTCCTTCEEEEE----------------------------------------------------CCSBSEEEECC
T ss_pred             --cCCCCCCCCCEEecc----------------------------------------------------CCceEEEEech
Confidence              458899999999732                                                    28999999999


Q ss_pred             ceeEEcCCCCChhhh--hhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHH
Q 026087          158 VSVAKIDPQAPLDKV--CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (243)
Q Consensus       158 ~~~~~lp~~~~~~~a--a~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~  234 (243)
                      +.++++|+++++.++  +++++++.|||+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|+++++++++++.
T Consensus       111 ~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~  189 (336)
T 4b7c_A          111 KGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRF  189 (336)
T ss_dssp             TTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHH
T ss_pred             HHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            999999999987776  7788899999999888999999999999998 9999999999999999 99999999999999


Q ss_pred             H-HHhcccC
Q 026087          235 V-LNALAMS  242 (243)
Q Consensus       235 ~-~~~Ga~~  242 (243)
                      + +++|++.
T Consensus       190 ~~~~~g~~~  198 (336)
T 4b7c_A          190 LVEELGFDG  198 (336)
T ss_dssp             HHHTTCCSE
T ss_pred             HHHHcCCCE
Confidence            9 8999863

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=100.00  E-value=1.7e-32  Score=240.17  Aligned_cols=183  Identities=19%  Similarity=0.246  Sum_probs=159.2

Q ss_pred             CcccceeEEEE-ecC---C----CCeEEEeeccCCC-CCCcEEEEEeEEecChhhHHhhcC----CCC-CCCCCeeeeec
Q 026087            5 GQVITCKAAVA-WEP---N----KPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSG----KDP-EGLFPCILGHE   70 (243)
Q Consensus         5 ~~~~~~~a~~~-~~~---~----~~~~~~~~~~p~~-~~~evlVkv~a~~i~~~D~~~~~g----~~~-~~~~p~~~G~e   70 (243)
                      ..+++|||+++ .++   +    +.+++++++.|.| ++|||+|||++++||++|++.+.+    .+. ..++|.++|||
T Consensus         4 ~~~~~mka~v~~~~~~~~g~p~~~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~~~~g~~~~~~~~~p~v~G~E   83 (357)
T 2zb4_A            4 AAAMIVQRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGG   83 (357)
T ss_dssp             --CCEEEEEEECCCCCTTSCCCGGGEEEEEEECCSCCCTTEEEEEEEEEECCTTHHHHTSSSCSSSSSCCCCBTSBCEEE
T ss_pred             cccccceEEEEeccCCCCCCCCcCceEEEeecCCCCCCCCeEEEEEEEEecCHHHHhhccccccccccCCCCCCcccccc
Confidence            46789999999 454   3    2399999999999 999999999999999999988775    232 23578899999


Q ss_pred             eEEEEEEeCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCccee
Q 026087           71 AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFS  150 (243)
Q Consensus        71 ~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~  150 (243)
                      ++|+|++  +++++|++||||++..                                                   |+|+
T Consensus        84 ~~G~V~~--~~v~~~~vGdrV~~~~---------------------------------------------------G~~a  110 (357)
T 2zb4_A           84 GIGIIEE--SKHTNLTKGDFVTSFY---------------------------------------------------WPWQ  110 (357)
T ss_dssp             EEEEEEE--ECSTTCCTTCEEEEEE---------------------------------------------------EESB
T ss_pred             EEEEEEe--cCCCCCCCCCEEEecC---------------------------------------------------CCcE
Confidence            9999999  8899999999997431                                                   2899


Q ss_pred             eEEEeccceeEEcCCCC-----ChhhhhhcccccchhhhhhhhcCCCCCC--CEEEEEcC-CHHHHHHHHHHHHcCCCEE
Q 026087          151 QYTVVHDVSVAKIDPQA-----PLDKVCLLGCGVPTGLGAVWNTAKVEPG--SIVAVFGL-GTVGLAVAEGAKAAGASRV  222 (243)
Q Consensus       151 ~~~~~~~~~~~~lp~~~-----~~~~aa~l~~~~~ta~~~~~~~~~~~~g--~~vlV~G~-g~~G~~a~~~a~~~G~~~v  222 (243)
                      ||++++.+.++++|+++     +++ +++++.++.|||+++.+..++++|  ++|||+|+ |++|++++|+++.+|+++|
T Consensus       111 ey~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~V  189 (357)
T 2zb4_A          111 TKVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRV  189 (357)
T ss_dssp             SEEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEE
T ss_pred             EEEEEchHHceecCcccccCchhHH-HHhcccHHHHHHHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeE
Confidence            99999999999999998     555 677888999999998888999999  99999998 9999999999999999789


Q ss_pred             EEEcCChhHHHHHHH-hccc
Q 026087          223 IGIDIDPKKFDRVLN-ALAM  241 (243)
Q Consensus       223 i~~~~~~~~~~~~~~-~Ga~  241 (243)
                      +++++++++++.+++ +|++
T Consensus       190 i~~~~~~~~~~~~~~~~g~~  209 (357)
T 2zb4_A          190 VGICGTHEKCILLTSELGFD  209 (357)
T ss_dssp             EEEESCHHHHHHHHHTSCCS
T ss_pred             EEEeCCHHHHHHHHHHcCCc
Confidence            999999999999987 8875

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=100.00  E-value=1.8e-32  Score=234.84  Aligned_cols=171  Identities=23%  Similarity=0.237  Sum_probs=155.2

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQPG   88 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~~G   88 (243)
                      |||+++.+++.+..++++|.|+|++|||+|||++++||++|++++.|.++. .++|.++|||++|+|+           |
T Consensus         1 Mka~~~~~~g~~~~l~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~-----------G   69 (302)
T 1iz0_A            1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVVE-----------G   69 (302)
T ss_dssp             CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEET-----------T
T ss_pred             CeEEEEcCCCCchheEECCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcccceEEEEEE-----------C
Confidence            789999999886667799999999999999999999999999999987654 3689999999999998           9


Q ss_pred             CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCC
Q 026087           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (243)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~  168 (243)
                      |||+..+                               .                  .|+|+||+++|++.++++|++++
T Consensus        70 drV~~~~-------------------------------~------------------~G~~aey~~v~~~~~~~iP~~~~  100 (302)
T 1iz0_A           70 RRYAALV-------------------------------P------------------QGGLAERVAVPKGALLPLPEGLS  100 (302)
T ss_dssp             EEEEEEC-------------------------------S------------------SCCSBSEEEEEGGGCEECCTTCC
T ss_pred             cEEEEec-------------------------------C------------------CcceeeEEEEcHHHcEeCCCCCC
Confidence            9997542                               1                  13899999999999999999999


Q ss_pred             hhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++++++++.++.|||+++.+.. +++|++|||+|+ |++|++++|+++.+|+ +|++++++++++++++++|++.
T Consensus       101 ~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~  173 (302)
T 1iz0_A          101 PEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEE  173 (302)
T ss_dssp             HHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSE
T ss_pred             HHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCE
Confidence            9999999999999999887677 999999999998 9999999999999999 9999999999999999999863

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=99.97  E-value=1e-29  Score=220.47  Aligned_cols=177  Identities=18%  Similarity=0.174  Sum_probs=152.5

Q ss_pred             cccceeEEEEecC--C----CCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeC
Q 026087            6 QVITCKAAVAWEP--N----KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVG   79 (243)
Q Consensus         6 ~~~~~~a~~~~~~--~----~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G   79 (243)
                      .+++||++++.+.  +    +.+++++++.|+|++|||+|||++++||+.|... ..   ..++|.++|||++|+|++. 
T Consensus         4 ~~~~mka~~~~~~~~g~~~~~~l~~~e~~~P~~~~~eVlVkv~a~gi~~~~~~~-~~---~~~~p~~~g~e~~G~Vv~~-   78 (333)
T 1v3u_A            4 FMVKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIA-SK---RLKEGAVMMGQQVARVVES-   78 (333)
T ss_dssp             CCCEEEEEEECC-----CCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHH-TT---TCCTTSBCCCCEEEEEEEE-
T ss_pred             ccccccEEEEeecCCCCCCccceEEEeCCCCCCCCCEEEEEEEEeccCHHHccc-cC---cCCCCcccccceEEEEEec-
Confidence            4578999999874  3    3389999999999999999999999999998732 21   2356789999999999995 


Q ss_pred             CCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccce
Q 026087           80 EGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS  159 (243)
Q Consensus        80 ~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  159 (243)
                       ++++|++||||+..                                                    |+|+||++++.+.
T Consensus        79 -~v~~~~vGdrV~~~----------------------------------------------------g~~aey~~v~~~~  105 (333)
T 1v3u_A           79 -KNSAFPAGSIVLAQ----------------------------------------------------SGWTTHFISDGKG  105 (333)
T ss_dssp             -SCTTSCTTCEEEEC----------------------------------------------------CCSBSEEEESSTT
T ss_pred             -CCCCCCCCCEEEec----------------------------------------------------CceEEEEEechHH
Confidence             57889999999732                                                    2799999999999


Q ss_pred             eEEcCCC----CChhh-hhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHH
Q 026087          160 VAKIDPQ----APLDK-VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (243)
Q Consensus       160 ~~~lp~~----~~~~~-aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~  233 (243)
                      ++++|++    +++++ ++++..++.|||+++.+..++++|++|||+|+ |++|++++|+++..|+ +|+++++++++++
T Consensus       106 ~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~  184 (333)
T 1v3u_A          106 LEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIA  184 (333)
T ss_dssp             EEECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHH
T ss_pred             eEEcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            9999997    88887 47888899999999888889999999999998 9999999999999999 9999999999999


Q ss_pred             HHHHhccc
Q 026087          234 RVLNALAM  241 (243)
Q Consensus       234 ~~~~~Ga~  241 (243)
                      .++++|++
T Consensus       185 ~~~~~g~~  192 (333)
T 1v3u_A          185 YLKQIGFD  192 (333)
T ss_dssp             HHHHTTCS
T ss_pred             HHHhcCCc
Confidence            99989875

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.96  E-value=6.7e-30  Score=244.12  Aligned_cols=175  Identities=28%  Similarity=0.323  Sum_probs=151.4

Q ss_pred             eEEEEecCCCC--eEEEeecc--CCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087           11 KAAVAWEPNKP--LVIEDVQV--APPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (243)
Q Consensus        11 ~a~~~~~~~~~--~~~~~~~~--p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~   86 (243)
                      ..+.+..++.+  +++++.+.  |+|++|||+|||+++|||++|++++.|.++   .|.++|||++|+|+++|+++++|+
T Consensus       211 ~~l~~~~~G~~~~L~~~~~~~p~~~~~~~eVlV~V~a~gin~~D~~~~~G~~~---~~~~lG~E~aG~V~~vG~~V~~~~  287 (795)
T 3slk_A          211 WRLEATRPGSLDGLALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYP---GVASLGSEGAGVVVETGPGVTGLA  287 (795)
T ss_dssp             CCEEESSTTSSTTEEECCCHHHHSCCCSSEEEEEEEEEEECHHHHHHTTTCCS---SCCCSCCCEEEEEEEECSSCCSSC
T ss_pred             EEEecCCCCCccceEEEeCCccCCCCCCCEEEEEEEEEccCHHHHHHHcCCCC---CCccccceeEEEEEEeCCCCCcCC
Confidence            34555566543  88887774  568999999999999999999999998764   346799999999999999999999


Q ss_pred             CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (243)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  166 (243)
                      +||||+..                                .+                  |+|++|++++.+.++++|++
T Consensus       288 vGDrV~~~--------------------------------~~------------------G~~ae~~~v~~~~~~~iP~~  317 (795)
T 3slk_A          288 PGDRVMGM--------------------------------IP------------------KAFGPLAVADHRMVTRIPAG  317 (795)
T ss_dssp             TTCEEEEC--------------------------------CS------------------SCSSSEEEEETTSEEECCTT
T ss_pred             CCCEEEEE--------------------------------ec------------------CCCcCEEEeehHHEEECCCC
Confidence            99999743                                12                  38999999999999999999


Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +++++|+++++++.|+|+++.+..++++|++|||+|+ |++|++++|+||.+|+ +|+++++++ |.++++ +|++
T Consensus       318 ls~~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga-~V~~t~~~~-k~~~l~-lga~  390 (795)
T 3slk_A          318 WSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGA-EVYATASED-KWQAVE-LSRE  390 (795)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTBHHHHHHHHHHHHTTC-CEEEECCGG-GGGGSC-SCGG
T ss_pred             CCHHHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeChH-Hhhhhh-cChh
Confidence            9999999999999999999989999999999999997 9999999999999999 899998655 555544 6665

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=99.96  E-value=2.3e-29  Score=219.26  Aligned_cols=179  Identities=21%  Similarity=0.201  Sum_probs=148.2

Q ss_pred             cceeEEEEec-----CCC-CeEEE--eeccCC-CCCCcEEEEEeEEecChhhHHhhcCCCCC----CCCCeeeeeceEEE
Q 026087            8 ITCKAAVAWE-----PNK-PLVIE--DVQVAP-PQAGEVRIKILFTALCHTDAYTWSGKDPE----GLFPCILGHEAAGI   74 (243)
Q Consensus         8 ~~~~a~~~~~-----~~~-~~~~~--~~~~p~-~~~~evlVkv~a~~i~~~D~~~~~g~~~~----~~~p~~~G~e~vG~   74 (243)
                      .+||+++...     ++. .++++  +++.|. |++|||||||.++++|+.|. .+.|.+..    ..+|.++|||++|+
T Consensus         3 ~~mka~~m~a~~~~~p~~~~l~~~~~~~~~P~~~~~~eVlVkv~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G~e~~G~   81 (345)
T 2j3h_A            3 ATNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMR-IRMGKPDPSTAALAQAYTPGQPIQGY   81 (345)
T ss_dssp             EEEEEEEECSCBSSSCCGGGEEEEEEEEECCSCSSSSCEEEEECEEECCTTHH-HHHBC---------CCCCTTSBCEEE
T ss_pred             ccceEEEEecCCCCCCCccceeEEEeecCCCCCCCCCEEEEEEEEecCCHHHH-hhcccCCCCccccCCCcCCCCeeecc
Confidence            3566666553     442 38888  888887 89999999999999988875 44454322    14688999999999


Q ss_pred             EEE--eCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeE
Q 026087           75 VES--VGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQY  152 (243)
Q Consensus        75 V~~--~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~  152 (243)
                      +++  +|+++++|++||||+..                                                    |+|+||
T Consensus        82 ~~~GvV~~~v~~~~vGdrV~~~----------------------------------------------------g~~aey  109 (345)
T 2j3h_A           82 GVSRIIESGHPDYKKGDLLWGI----------------------------------------------------VAWEEY  109 (345)
T ss_dssp             EEEEEEEECSTTCCTTCEEEEE----------------------------------------------------EESBSE
T ss_pred             eEEEEEecCCCCCCCCCEEEee----------------------------------------------------cCceeE
Confidence            999  99999999999999732                                                    279999


Q ss_pred             EEeccce--eEEcCC---CCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEc
Q 026087          153 TVVHDVS--VAKIDP---QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID  226 (243)
Q Consensus       153 ~~~~~~~--~~~lp~---~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~  226 (243)
                      ++++++.  ++++|+   .++++ ++++.+++.|||+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|++++
T Consensus       110 ~~v~~~~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~  187 (345)
T 2j3h_A          110 SVITPMTHAHFKIQHTDVPLSYY-TGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSA  187 (345)
T ss_dssp             EEECCCTTTCEEECCCSSCTTGG-GTTTSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             EEecccccceeecCCCCCCHHHH-HHhccccHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe
Confidence            9998876  999996   35555 67788899999998878889999999999997 9999999999999999 899999


Q ss_pred             CChhHHHHHH-Hhccc
Q 026087          227 IDPKKFDRVL-NALAM  241 (243)
Q Consensus       227 ~~~~~~~~~~-~~Ga~  241 (243)
                      +++++++.++ ++|++
T Consensus       188 ~~~~~~~~~~~~~g~~  203 (345)
T 2j3h_A          188 GSKEKVDLLKTKFGFD  203 (345)
T ss_dssp             SSHHHHHHHHHTSCCS
T ss_pred             CCHHHHHHHHHHcCCc
Confidence            9999999998 79985

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.84  E-value=6.2e-21  Score=199.38  Aligned_cols=160  Identities=16%  Similarity=0.140  Sum_probs=137.3

Q ss_pred             eEEEeeccCC-CC--CCcEEEEEeEEecChhhHHhhcCCCCCC-------CCCeeeeeceEEEEEEeCCCCCcCCCCCEE
Q 026087           22 LVIEDVQVAP-PQ--AGEVRIKILFTALCHTDAYTWSGKDPEG-------LFPCILGHEAAGIVESVGEGVTEVQPGDHV   91 (243)
Q Consensus        22 ~~~~~~~~p~-~~--~~evlVkv~a~~i~~~D~~~~~g~~~~~-------~~p~~~G~e~vG~V~~~G~~~~~~~~Gd~V   91 (243)
                      +.+.+.+... +.  ++||+|||.++++|+.|+.+..|..+..       ..|.++|+|++|+|.          +||+|
T Consensus      1544 l~~~~~~~~~~~~l~~~eVlVkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V~----------vGdrV 1613 (2512)
T 2vz8_A         1544 IRWVCSPLHYALPASCQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRDA----------SGRRV 1613 (2512)
T ss_dssp             EEEEECTTTTCCCHHHHTTEEEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEET----------TSCCE
T ss_pred             eEEEecCcccccCCCCCceEEEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEEc----------cCCEE
Confidence            6666655433 33  7999999999999999999999876432       245789999999873          79999


Q ss_pred             eeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCChhh
Q 026087           92 IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK  171 (243)
Q Consensus        92 ~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~  171 (243)
                      +...                               .+                  |+|++|+++|++.++++|+++++++
T Consensus      1614 ~g~~-------------------------------~~------------------G~~Aeyv~vp~~~v~~iPd~ls~~e 1644 (2512)
T 2vz8_A         1614 MGMV-------------------------------PA------------------EGLATSVLLLQHATWEVPSTWTLEE 1644 (2512)
T ss_dssp             EEEC-------------------------------SS------------------CCSBSEEECCGGGEEECCTTSCHHH
T ss_pred             EEee-------------------------------cC------------------CceeeEEEcccceEEEeCCCCCHHH
Confidence            7431                               11                  3899999999999999999999999


Q ss_pred             hhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH----hccc
Q 026087          172 VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN----ALAM  241 (243)
Q Consensus       172 aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~----~Ga~  241 (243)
                      ||++++++.|||+++....++++|++|||+|+ |++|++++|+||.+|+ +|++++++++|.+++++    +|++
T Consensus      1645 AA~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga-~Viat~~s~~k~~~l~~~~~~lga~ 1718 (2512)
T 2vz8_A         1645 AASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGC-RVFTTVGSAEKRAYLQARFPQLDET 1718 (2512)
T ss_dssp             HTTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTCCST
T ss_pred             HHHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHHcCC-EEEEEeCChhhhHHHHhhcCCCCce
Confidence            99999999999999988899999999999986 9999999999999999 89999999999999986    5665

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.34  E-value=8.2e-13  Score=105.55  Aligned_cols=83  Identities=20%  Similarity=0.213  Sum_probs=66.1

Q ss_pred             ceeEEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       158 ~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      +.++++|+++++++|++++.++.|||+++.+..++++|++|||+|+ |++|++++++++..|+ +|+++++++++.+.++
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~   80 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS   80 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            4678999999999999999899999998877889999999999996 9999999999999999 8999999999999998


Q ss_pred             Hhccc
Q 026087          237 NALAM  241 (243)
Q Consensus       237 ~~Ga~  241 (243)
                      ++|++
T Consensus        81 ~~g~~   85 (198)
T 1pqw_A           81 RLGVE   85 (198)
T ss_dssp             TTCCS
T ss_pred             HcCCC
Confidence            88875

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.70  E-value=2.5e-08  Score=81.71  Aligned_cols=118  Identities=9%  Similarity=0.014  Sum_probs=77.6

Q ss_pred             CCCCCEEeeec-------ccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEecc
Q 026087           85 VQPGDHVIPCY-------QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD  157 (243)
Q Consensus        85 ~~~Gd~V~~~~-------~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  157 (243)
                      +++||+|++.+       ...|+.|.+|..|..++|......  +|                        ...      .
T Consensus         4 ~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~g~~--~G------------------------~~~------~   51 (248)
T 2yvl_A            4 FKEGEYVLIRFGEKKFLRKLLPKQSLSVKKSVLKFDEVIGKP--EG------------------------VKI------N   51 (248)
T ss_dssp             CCTTCEEEEEETTEEEEEECCTTCEEEETTEEEEGGGTTTCC--TT------------------------EEE------T
T ss_pred             CCCCCEEEEEeCCeEEEEEEcCCCEEecCCceEEHHHhcCCC--CC------------------------CEE------E
Confidence            89999999998       677888999988888888753211  11                        111      2


Q ss_pred             ceeEEcCCCCChhhhhhccc----ccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHH
Q 026087          158 VSVAKIDPQAPLDKVCLLGC----GVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (243)
Q Consensus       158 ~~~~~lp~~~~~~~aa~l~~----~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~  233 (243)
                      ..+++.|+.....+.+....    ....+. .+.....++++++||.+|+| .|..+..+++. +. ++++++.+++.++
T Consensus        52 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G-~G~~~~~l~~~-~~-~v~~vD~~~~~~~  127 (248)
T 2yvl_A           52 GFEVYRPTLEEIILLGFERKTQIIYPKDSF-YIALKLNLNKEKRVLEFGTG-SGALLAVLSEV-AG-EVWTFEAVEEFYK  127 (248)
T ss_dssp             TEEEECCCHHHHHHHTSCCSSCCCCHHHHH-HHHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEECSCHHHHH
T ss_pred             EEEEeCCCHHHHHHhcCcCCCCcccchhHH-HHHHhcCCCCCCEEEEeCCC-ccHHHHHHHHh-CC-EEEEEecCHHHHH
Confidence            33333333222121111100    011111 24456678899999999998 69999999998 66 9999999999988


Q ss_pred             HHHHh
Q 026087          234 RVLNA  238 (243)
Q Consensus       234 ~~~~~  238 (243)
                      .+++.
T Consensus       128 ~a~~~  132 (248)
T 2yvl_A          128 TAQKN  132 (248)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.35  E-value=3.5e-09  Score=93.83  Aligned_cols=138  Identities=16%  Similarity=0.068  Sum_probs=100.3

Q ss_pred             CCeeeeeceEEEEEEeCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceee
Q 026087           63 FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYH  142 (243)
Q Consensus        63 ~p~~~G~e~vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~  142 (243)
                      +-...|++.++.|..+|++++++.+|+.+++..-..                        ++.                .
T Consensus        73 ~~~~~g~~a~~~i~~v~~Glds~~vGe~~Il~qvk~------------------------~~~----------------~  112 (404)
T 1gpj_A           73 AWVKRGSEAVRHLFRVASGLESMMVGEQEILRQVKK------------------------AYD----------------R  112 (404)
T ss_dssp             CEEEEHHHHHHHHHHHHTTTTSSSTTCHHHHHHHHH------------------------HHH----------------H
T ss_pred             eeeecCchHhhhheeeccCCCCCcCCcchhHHHHHH------------------------HHH----------------H
Confidence            335689999999999999999999999874321100                        000                0


Q ss_pred             ecCCcceeeEEEeccceeEEcCCCCChhhhhhcccccchhhhhhhhcC---CCCCCCEEEEEcCCHHHHHHHHHHHHcCC
Q 026087          143 FMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA---KVEPGSIVAVFGLGTVGLAVAEGAKAAGA  219 (243)
Q Consensus       143 ~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~---~~~~g~~vlV~G~g~~G~~a~~~a~~~G~  219 (243)
                      ....|++++|+..+...++++|++++.+.++. ..+..++|.++....   .-.+|++|+|+|+|.+|.++++.++.+|+
T Consensus       113 ~~~~G~~~~~~~~~~~~a~~~~k~v~~~~~~~-~~~~s~a~~av~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~  191 (404)
T 1gpj_A          113 AARLGTLDEALKIVFRRAINLGKRAREETRIS-EGAVSIGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGV  191 (404)
T ss_dssp             HHHHTCCCHHHHHHHHHHHHHHHHHHHHSSTT-CSCCSHHHHHHHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCC
T ss_pred             HHHcCCchHHHHHHHHHHhhhhccCcchhhhc-CCCccHHHHHHHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCC
Confidence            00112567777777778888888877776554 335667776553221   12589999999999999999999999999


Q ss_pred             CEEEEEcCChhHH-HHHHHhccc
Q 026087          220 SRVIGIDIDPKKF-DRVLNALAM  241 (243)
Q Consensus       220 ~~vi~~~~~~~~~-~~~~~~Ga~  241 (243)
                      ++|++++++.+|. ++++++|++
T Consensus       192 ~~V~v~~r~~~ra~~la~~~g~~  214 (404)
T 1gpj_A          192 RAVLVANRTYERAVELARDLGGE  214 (404)
T ss_dssp             SEEEEECSSHHHHHHHHHHHTCE
T ss_pred             CEEEEEeCCHHHHHHHHHHcCCc
Confidence            8899999999886 677788864

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=97.60  E-value=0.00012  Score=64.59  Aligned_cols=47  Identities=34%  Similarity=0.414  Sum_probs=44.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      ++++|+|+|+|.+|+.++++++.+|+ +|++++++.++++.++++|++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~~~~~~~~~lGa~  217 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAE  217 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCGGGHHHHHHTTCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCE
Confidence            68999999999999999999999999 899999999999999989875

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=97.55  E-value=0.00012  Score=64.01  Aligned_cols=47  Identities=32%  Similarity=0.434  Sum_probs=44.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      ++++|+|+|+|.+|+.++++++.+|+ +|+++++++++++.++++|++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~~~d~~~~~~~~~~~~Ga~  217 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGK  217 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCe
Confidence            78999999999999999999999999 799999999999999889875

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.54  E-value=0.00014  Score=63.38  Aligned_cols=48  Identities=29%  Similarity=0.403  Sum_probs=45.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++.+|+|+|+|.+|+.++++++.+|+ +|++++++.++++.++++|++.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~lGa~~  230 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRPEVAEQVRSVGAQW  230 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSGGGHHHHHHTTCEE
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeE
Confidence            67999999999999999999999999 8999999999999999998753

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.49  E-value=0.00019  Score=63.05  Aligned_cols=47  Identities=30%  Similarity=0.420  Sum_probs=44.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      ++.+|+|+|+|.+|+.++++++.+|+ +|+++++++++++.++++|++
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~~G~~  235 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRPAAKEQVASLGAK  235 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSTTHHHHHHHTTCE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCc
Confidence            67999999999999999999999999 899999999999999999875

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.47  E-value=0.00023  Score=61.81  Aligned_cols=46  Identities=26%  Similarity=0.325  Sum_probs=42.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +++|+|+|+|.+|++++++++.+|+ +|++++++++|++.++++|++
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~  212 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS  212 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCc
Confidence            4899999999999999999999999 999999999999999887754

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=97.42  E-value=0.00032  Score=63.35  Aligned_cols=49  Identities=33%  Similarity=0.361  Sum_probs=46.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      ..+|++|+|+|.|.+|..+++.++.+|+ +|+++++++++.+.++++|++
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~~~~~~A~~~Ga~  319 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDPINALQAMMEGFD  319 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCE
Confidence            6789999999999999999999999999 999999999999888888875

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.25  E-value=0.00059  Score=59.54  Aligned_cols=48  Identities=29%  Similarity=0.295  Sum_probs=43.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH-hccc
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN-ALAM  241 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~-~Ga~  241 (243)
                      -++++|+|+|+|.+|+.+++.++.+|+ +|+++++++++++.+++ +|++
T Consensus       166 l~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~g~~  214 (377)
T 2vhw_A          166 VEPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEFCGR  214 (377)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhcCCe
Confidence            357999999999999999999999999 99999999999888876 5653

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.05  E-value=0.00042  Score=52.42  Aligned_cols=50  Identities=24%  Similarity=0.412  Sum_probs=41.4

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-Hhcc
Q 026087          190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL-NALA  240 (243)
Q Consensus       190 ~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~-~~Ga  240 (243)
                      ....++++|+|+|+|.+|...++.++..|. +|+++++++++.+.++ +.|+
T Consensus        14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~g~   64 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNSEFSG   64 (155)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCTTCCS
T ss_pred             hcccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHhcCCC
Confidence            445678999999999999999999999999 8999999998887766 5554

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.03  E-value=0.0013  Score=57.06  Aligned_cols=46  Identities=28%  Similarity=0.341  Sum_probs=41.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH-hcc
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN-ALA  240 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~-~Ga  240 (243)
                      ++++|+|+|+|.+|+.+++.++.+|+ +|+++++++++++.+++ +|+
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~g~  211 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVFGG  211 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCc
Confidence            45899999999999999999999999 99999999999887765 554

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.00  E-value=0.0015  Score=54.06  Aligned_cols=52  Identities=19%  Similarity=0.217  Sum_probs=42.1

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHHh
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G-~~~vi~~~~~~~~~~~~~~~  238 (243)
                      +.....++++++||-+|+|. |..++.+++..+ ..+|++++.+++.++.+++.
T Consensus       104 i~~~~~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~  156 (277)
T 1o54_A          104 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESN  156 (277)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHH
Confidence            44566789999999999887 888889999864 34999999999988777653

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.79  E-value=0.0023  Score=47.42  Aligned_cols=47  Identities=17%  Similarity=0.195  Sum_probs=42.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      -.++|+|.|.|.+|...++.++..|. +|++++.++++.+.+++.|..
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~~g~~   52 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRERGVR   52 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHcCCC
Confidence            34689999999999999999999999 899999999999998887764

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.78  E-value=0.0018  Score=50.17  Aligned_cols=46  Identities=20%  Similarity=0.330  Sum_probs=41.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHHHhccc
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~-G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +++|+|+|.|.+|...++.++.. |. +|+++++++++.+.+++.|+.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~~g~~   85 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRSEGRN   85 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHHTTCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHHCCCC
Confidence            56899999999999999999998 99 899999999999988887764

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=96.77  E-value=0.0045  Score=52.78  Aligned_cols=51  Identities=25%  Similarity=0.379  Sum_probs=40.9

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~-~~vi~~~~~~~~~~~~~~  237 (243)
                      +.....++++++||-+|+|. |..++.+++..|. .+|++++.+++.++.+++
T Consensus        97 ~l~~l~~~~g~~VLDiG~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~  148 (336)
T 2b25_A           97 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKK  148 (336)
T ss_dssp             HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Confidence            33445688999999999877 7888888887763 499999999988877765

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.69  E-value=0.0034  Score=44.34  Aligned_cols=46  Identities=20%  Similarity=0.122  Sum_probs=39.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHHhcc
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G-~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      .+.+|+|+|+|.+|...++.+...| . +|+++++++++.+.+...+.
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~-~v~~~~r~~~~~~~~~~~~~   50 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNY-SVTVADHDLAALAVLNRMGV   50 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSE-EEEEEESCHHHHHHHHTTTC
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHhCCC
Confidence            3568999999999999999999999 6 89999999998887775543

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.64  E-value=0.0041  Score=52.14  Aligned_cols=49  Identities=33%  Similarity=0.356  Sum_probs=43.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      --.|++|+|+|.|.+|...++.++.+|+ +|++++++.++.+.+.++|+.
T Consensus       152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~  200 (293)
T 3d4o_A          152 TIHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARESDLLARIAEMGME  200 (293)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTSE
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHCCCe
Confidence            3478999999999999999999999999 999999998887777777754

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.63  E-value=0.0031  Score=46.57  Aligned_cols=46  Identities=20%  Similarity=0.248  Sum_probs=40.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      ..+++|.|+|.+|...++.+...|. +|+++++++++.+.+++.|..
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~~~~   51 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDEGFD   51 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHCCCc
Confidence            4679999999999999999999999 899999999999888876653

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=96.60  E-value=0.0045  Score=53.45  Aligned_cols=48  Identities=31%  Similarity=0.356  Sum_probs=42.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      -+|++|.|.|.|.+|+.+++.++.+|+ +|++.|.+.++.++.+++|++
T Consensus       173 L~GktV~I~G~GnVG~~~A~~l~~~Ga-kVvvsD~~~~~~~~a~~~ga~  220 (355)
T 1c1d_A          173 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHT  220 (355)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHhcCCE
Confidence            578999999999999999999999999 899999888776667777764

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=96.52  E-value=0.0011  Score=49.35  Aligned_cols=60  Identities=10%  Similarity=-0.005  Sum_probs=44.8

Q ss_pred             cchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHH-HHHhcc
Q 026087          179 VPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR-VLNALA  240 (243)
Q Consensus       179 ~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~-~~~~Ga  240 (243)
                      ++.++.++ +......+++|+|+|+|.+|...++.++..|+ +|+++++++++.+. ++++|.
T Consensus         6 ~sv~~~a~-~~~~~~~~~~v~iiG~G~iG~~~a~~l~~~g~-~v~v~~r~~~~~~~~a~~~~~   66 (144)
T 3oj0_A            6 VSIPSIVY-DIVRKNGGNKILLVGNGMLASEIAPYFSYPQY-KVTVAGRNIDHVRAFAEKYEY   66 (144)
T ss_dssp             CSHHHHHH-HHHHHHCCCEEEEECCSHHHHHHGGGCCTTTC-EEEEEESCHHHHHHHHHHHTC
T ss_pred             ccHHHHHH-HHHHhccCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCHHHHHHHHHHhCC
Confidence            34455544 23333448999999999999999999998999 59999999988755 455554

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=96.38  E-value=0.007  Score=54.34  Aligned_cols=48  Identities=35%  Similarity=0.376  Sum_probs=42.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      -.|++++|+|+|.+|...++.++..|+ +|+++++++.+...+...|++
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~~~~a~~Aa~~g~d  310 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEIDPICALQATMEGLQ  310 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHhCCc
Confidence            578999999999999999999999999 999999999888777776653

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.38  E-value=0.0074  Score=50.74  Aligned_cols=48  Identities=31%  Similarity=0.339  Sum_probs=42.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      --.|++|+|+|.|.+|..+++.++.+|+ +|++++++.++.+.+.++|+
T Consensus       154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~~~~~~~~~~~g~  201 (300)
T 2rir_A          154 TIHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSSAHLARITEMGL  201 (300)
T ss_dssp             CSTTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTC
T ss_pred             CCCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCC
Confidence            3468999999999999999999999999 99999999888776666665

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=96.35  E-value=0.0078  Score=53.17  Aligned_cols=48  Identities=29%  Similarity=0.252  Sum_probs=42.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      .-.|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|+
T Consensus       217 ~L~GktV~ViG~G~IGk~vA~~Lra~Ga-~Viv~D~dp~ra~~A~~~G~  264 (435)
T 3gvp_A          217 MFGGKQVVVCGYGEVGKGCCAALKAMGS-IVYVTEIDPICALQACMDGF  264 (435)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTC
T ss_pred             eecCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEeCChhhhHHHHHcCC
Confidence            4689999999999999999999999999 89999998877766666664

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=96.24  E-value=0.0096  Score=51.61  Aligned_cols=49  Identities=27%  Similarity=0.332  Sum_probs=41.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHH-HHHhccc
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR-VLNALAM  241 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~-~~~~Ga~  241 (243)
                      --.|++|+|+|.|.+|..+++.+..+|+ +|++.+++.++++. +.++|++
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~Ga-kVvv~D~~~~~l~~~a~~~ga~  219 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGAD  219 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCE
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE
Confidence            3578999999999999999999999999 89999999888764 4456664

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.19  E-value=0.0031  Score=46.27  Aligned_cols=45  Identities=24%  Similarity=0.415  Sum_probs=38.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      +++|+|+|+|.+|...++.+...|. +|+++++++++.+.+++.|.
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~~~   50 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYAT   50 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHTTTTTCS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCC
Confidence            4679999999999999999999998 79999998888776655443

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=96.15  E-value=0.02  Score=46.36  Aligned_cols=52  Identities=21%  Similarity=0.311  Sum_probs=41.8

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHHh
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G-~~~vi~~~~~~~~~~~~~~~  238 (243)
                      +.....++++++||-+|+|. |..+..+++..+ ..++++++.+++.++.+++.
T Consensus        85 i~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~  137 (255)
T 3mb5_A           85 IVAYAGISPGDFIVEAGVGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWEN  137 (255)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEecCCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHH
Confidence            44566789999999999876 888888888853 34999999999988777653

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=96.12  E-value=0.012  Score=52.26  Aligned_cols=48  Identities=29%  Similarity=0.336  Sum_probs=41.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      .-.|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|+
T Consensus       244 ~L~GKTVgVIG~G~IGr~vA~~lrafGa-~Viv~d~dp~~a~~A~~~G~  291 (464)
T 3n58_A          244 MMAGKVAVVCGYGDVGKGSAQSLAGAGA-RVKVTEVDPICALQAAMDGF  291 (464)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTC
T ss_pred             cccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCcchhhHHHhcCc
Confidence            5689999999999999999999999999 99999988876655555554

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=96.08  E-value=0.0083  Score=50.52  Aligned_cols=49  Identities=18%  Similarity=0.216  Sum_probs=43.2

Q ss_pred             cCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087          189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       189 ~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      ..+++++++||.+|+|+.++.++.+++..|+ +|++++.+++.++.+++.
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l~~Ar~~  165 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRKV  165 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHHHHHHHH
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHHHHHHHH
Confidence            4678999999999999888888888888899 999999999998888764

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=96.06  E-value=0.0041  Score=50.99  Aligned_cols=45  Identities=18%  Similarity=0.238  Sum_probs=39.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHHHhc
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRVLNAL  239 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~-G~~~vi~~~~~~~~~~~~~~~G  239 (243)
                      +++++||.+|+|. |..+..+++.. +. ++++++.+++.++.+++.+
T Consensus        84 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~  129 (269)
T 1p91_A           84 DKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRY  129 (269)
T ss_dssp             TTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCC-CHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHhC
Confidence            6789999999988 88899999986 66 9999999999998887754

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.00  E-value=0.013  Score=46.86  Aligned_cols=46  Identities=20%  Similarity=0.170  Sum_probs=39.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      .+.+|||+|+ |.+|...+..+...|+ +|+++++++++.+.+.+.++
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~   66 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNEEQGPELRERGA   66 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHTTC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECChHHHHHHHhCCC
Confidence            4689999998 9999999999999999 99999999998887776554

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=95.90  E-value=0.014  Score=47.31  Aligned_cols=52  Identities=21%  Similarity=0.232  Sum_probs=42.1

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHHh
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G-~~~vi~~~~~~~~~~~~~~~  238 (243)
                      +.....++++++||-+|+|. |..+..+++..+ ..+|++++.+++.++.+++.
T Consensus        88 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~  140 (258)
T 2pwy_A           88 MVTLLDLAPGMRVLEAGTGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERN  140 (258)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEECCCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence            44556789999999999985 888889998863 33999999999988877654

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=95.72  E-value=0.023  Score=50.29  Aligned_cols=49  Identities=27%  Similarity=0.342  Sum_probs=42.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      .-.|++|+|+|.|.+|...++.++.+|+ +|+++++++.+...+...|+.
T Consensus       208 ~L~GktVgIiG~G~IG~~vA~~Lka~Ga-~Viv~D~~p~~a~~A~~~G~~  256 (436)
T 3h9u_A          208 MIAGKTACVCGYGDVGKGCAAALRGFGA-RVVVTEVDPINALQAAMEGYQ  256 (436)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE
T ss_pred             cccCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCChhhhHHHHHhCCe
Confidence            3478999999999999999999999999 899999988877666666653

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=95.68  E-value=0.03  Score=45.94  Aligned_cols=52  Identities=21%  Similarity=0.292  Sum_probs=41.8

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHHh
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G-~~~vi~~~~~~~~~~~~~~~  238 (243)
                      +.....++++++||-+|+| .|..+..+++..+ ..+|++++.+++.++.+++.
T Consensus        91 i~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~  143 (280)
T 1i9g_A           91 IVHEGDIFPGARVLEAGAG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARRN  143 (280)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEEccc-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence            4456678999999999988 7888888888753 33999999999988777653

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=95.61  E-value=0.029  Score=46.63  Aligned_cols=47  Identities=26%  Similarity=0.241  Sum_probs=40.1

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HHhcc
Q 026087          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV-LNALA  240 (243)
Q Consensus       193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~-~~~Ga  240 (243)
                      -+|+++||.|+ +++|.+.+..+...|+ +|+.+++++++++.+ +++|.
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~g~   75 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEIGG   75 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCT
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCC
Confidence            46899999987 8999999999999999 999999999887655 34553

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=95.50  E-value=0.046  Score=45.59  Aligned_cols=43  Identities=26%  Similarity=0.288  Sum_probs=37.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      -.+++++|+|+|.+|.+++..+...|+++|++++++.+|.+.+
T Consensus       125 l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~l  167 (283)
T 3jyo_A          125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQAL  167 (283)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence            4678999999999999999999999997899999998887644

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=95.36  E-value=0.04  Score=44.72  Aligned_cols=42  Identities=26%  Similarity=0.273  Sum_probs=36.4

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      -.++++||+|+ +.+|...+..+...|+ +|+.+++++++++.+
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   52 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQV   52 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            45789999987 9999999999999999 899999998876554

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=95.33  E-value=0.04  Score=45.54  Aligned_cols=45  Identities=13%  Similarity=0.084  Sum_probs=38.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HHhc
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV-LNAL  239 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~-~~~G  239 (243)
                      ++++++|+|+|.+|.+++..+...|+ +|++++++.++.+.+ .+++
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~-~V~v~~R~~~~~~~la~~~~  163 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFA  163 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTG
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHhh
Confidence            57899999999999999999999997 999999998886544 4444

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.30  E-value=0.05  Score=39.37  Aligned_cols=44  Identities=25%  Similarity=0.394  Sum_probs=37.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH-hcc
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN-ALA  240 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~-~Ga  240 (243)
                      .+|+|+|+|.+|...++.+...|. +|+++++++++.+.+.+ +|.
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~   49 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDA   49 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhcCc
Confidence            578999999999999999998998 89999999888876654 353

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=95.24  E-value=0.033  Score=44.88  Aligned_cols=45  Identities=20%  Similarity=0.200  Sum_probs=38.5

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       191 ~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      ...+++++||+|+ |.+|...+..+...|+ +|+.+++++++++.+.
T Consensus        10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~   55 (249)
T 3f9i_A           10 IDLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLG   55 (249)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence            3567889999987 9999999999999999 8999999988876654

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=95.19  E-value=0.038  Score=45.46  Aligned_cols=42  Identities=26%  Similarity=0.278  Sum_probs=36.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      .++++||+|+ +.+|...+..+...|+ +|+.+++++++.+.+.
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~   71 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALA   71 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHH
Confidence            4678999987 9999999999889999 8999999988876654

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=95.10  E-value=0.047  Score=45.28  Aligned_cols=43  Identities=23%  Similarity=0.183  Sum_probs=37.4

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      -.|+++||+|+ |.+|...+..+...|+ +|+.+++++++.+.+.
T Consensus        14 l~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~   57 (291)
T 3rd5_A           14 FAQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAA   57 (291)
T ss_dssp             CTTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            35789999987 9999999999999999 8999999988876654

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=95.09  E-value=0.046  Score=45.85  Aligned_cols=48  Identities=17%  Similarity=0.117  Sum_probs=39.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HHhcc
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV-LNALA  240 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~-~~~Ga  240 (243)
                      -.+++++|+|+|.+|.+++..+...|+.+|++++++.+|.+.+ .+++.
T Consensus       139 l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~  187 (297)
T 2egg_A          139 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDE  187 (297)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCS
T ss_pred             CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhh
Confidence            3578999999999999999999999987899999998886544 34443

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=95.06  E-value=0.042  Score=46.35  Aligned_cols=47  Identities=26%  Similarity=0.429  Sum_probs=40.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++++++.++ +.+.++|++
T Consensus       140 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~  186 (307)
T 1wwk_A          140 LEGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPYPNE-ERAKEVNGK  186 (307)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHTTCE
T ss_pred             cCCceEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCCh-hhHhhcCcc
Confidence            357899999999999999999999999 99999988776 556666654

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=95.06  E-value=0.052  Score=45.35  Aligned_cols=43  Identities=28%  Similarity=0.384  Sum_probs=36.8

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      -.|+++||+|+ |.+|...+..+...|+ +|+.+++++++++.+.
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~   72 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAV   72 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            35789999987 9999999999999999 8999999988776543

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=95.04  E-value=0.042  Score=44.16  Aligned_cols=43  Identities=26%  Similarity=0.310  Sum_probs=36.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      -.++++||+|+ |.+|...+..+...|+ +|+.+++++++++.+.
T Consensus        12 l~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~   55 (247)
T 3i1j_A           12 LKGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTEASLAEVS   55 (247)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCHHHHHHHH
Confidence            35789999987 9999999999999999 8999999988765543

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=95.03  E-value=0.041  Score=45.48  Aligned_cols=41  Identities=24%  Similarity=0.293  Sum_probs=35.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .++++||+|+ |.+|...+..+...|+ +|+++++++++++.+
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   68 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKV   68 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            4678999988 9999999999999999 899999998876654

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=95.02  E-value=0.056  Score=44.41  Aligned_cols=41  Identities=24%  Similarity=0.394  Sum_probs=35.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .++++||+|+ |.+|...+..+...|+ +|++++++.++.+.+
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   72 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEEL   72 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHH
Confidence            4688999987 9999999999999999 899999988776544

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=94.99  E-value=0.061  Score=44.61  Aligned_cols=43  Identities=19%  Similarity=0.064  Sum_probs=37.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      .+++++|+|+|.+|.+++..+...|+.+|+++.++.+|.+.+.
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la  161 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALR  161 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHH
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            6789999999999999999999999779999999998866553

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=94.98  E-value=0.044  Score=44.69  Aligned_cols=42  Identities=31%  Similarity=0.396  Sum_probs=35.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      .++++||+|+ |.+|...+..+...|+ +|+.+++++++++.+.
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~   70 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVE   70 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            5689999987 9999999998889999 8999999988765543

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=94.95  E-value=0.061  Score=44.09  Aligned_cols=41  Identities=22%  Similarity=0.349  Sum_probs=35.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .++++||+|+ |.+|...+..+...|+ +|+++++++++++.+
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   61 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEA   61 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5688999987 9999999999999999 899999988776543

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=94.92  E-value=0.063  Score=43.84  Aligned_cols=41  Identities=22%  Similarity=0.318  Sum_probs=35.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .++++||+|+ |.+|...+..+...|+ +|+.+++++++.+.+
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   53 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEAS   53 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4688999987 9999999998888999 899999988776544

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=94.91  E-value=0.061  Score=44.39  Aligned_cols=42  Identities=29%  Similarity=0.255  Sum_probs=36.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      .++++||+|+ +.+|...+..+...|+ +|+.+++++++.+.+.
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~   68 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVA   68 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            4689999987 9999999999999999 8999999988766554

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=94.90  E-value=0.054  Score=44.71  Aligned_cols=41  Identities=24%  Similarity=0.243  Sum_probs=35.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .++++||+|+ +.+|...++.+...|+ +|+.+++++++.+.+
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   72 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVV   72 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4689999987 9999999999999999 899999988776544

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=94.88  E-value=0.058  Score=44.49  Aligned_cols=41  Identities=32%  Similarity=0.367  Sum_probs=34.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .++++||+|+ +.+|...+..+...|+ +|+.+++++++.+.+
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   64 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAA   64 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5689999987 9999999998889999 899999998876554

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=94.88  E-value=0.045  Score=45.38  Aligned_cols=42  Identities=17%  Similarity=0.125  Sum_probs=34.8

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      ..++++||+|+ +.+|...+..+...|+ +|+.+++++++.+.+
T Consensus        10 ~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~   52 (311)
T 3o26_A           10 TKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEA   52 (311)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            35789999987 9999999998889999 999999998876443

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=94.86  E-value=0.064  Score=44.14  Aligned_cols=41  Identities=20%  Similarity=0.264  Sum_probs=35.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .++++||+|+ |.+|...+..+...|+ +|+++++++++.+.+
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   62 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTT   62 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4688999987 9999999999999999 899999988776543

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=94.85  E-value=0.067  Score=44.08  Aligned_cols=41  Identities=32%  Similarity=0.370  Sum_probs=35.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .++++||+|+ |.+|...+..+...|+ +|+.+++++++.+.+
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~   69 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADT   69 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4678999987 9999999999999999 899999988776544

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=94.82  E-value=0.07  Score=43.09  Aligned_cols=40  Identities=33%  Similarity=0.404  Sum_probs=34.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~  234 (243)
                      .++++||+|+ |.+|...+..+...|+ +|+++++++++.+.
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~   52 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATK   52 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            4688999987 9999999999889999 89999998876543

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=94.82  E-value=0.043  Score=45.43  Aligned_cols=42  Identities=29%  Similarity=0.332  Sum_probs=34.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      .|+++||+|+ +.+|...+..+...|+ +|+.+++++++.+.+.
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~   74 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAAA   74 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            5789999987 9999999999999999 8999999988765543

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=94.81  E-value=0.069  Score=43.81  Aligned_cols=41  Identities=29%  Similarity=0.394  Sum_probs=35.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .++++||+|+ |.+|...+..+...|+ +|+.+++++++++.+
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   61 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDEC   61 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4688999987 9999999999999999 899999998776543

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=94.81  E-value=0.099  Score=44.29  Aligned_cols=43  Identities=14%  Similarity=0.176  Sum_probs=36.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC---hhHHHHH
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID---PKKFDRV  235 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~---~~~~~~~  235 (243)
                      -.++++||+|+|.+|.+++..+...|+++|+++.++   .+|.+.+
T Consensus       152 l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~l  197 (315)
T 3tnl_A          152 IIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKT  197 (315)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHH
T ss_pred             ccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHH
Confidence            367899999999999999999999999889999998   6665443

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=94.79  E-value=0.071  Score=43.35  Aligned_cols=42  Identities=31%  Similarity=0.332  Sum_probs=36.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      .++++||+|+ |.+|...+..+...|+ +|+.+++++++.+.+.
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~   53 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLDVMAAQAVV   53 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            4688999987 9999999999999999 8999999887766543

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=94.77  E-value=0.071  Score=44.14  Aligned_cols=42  Identities=21%  Similarity=0.309  Sum_probs=36.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      +++++||+|+ +.+|...+..+...|+ +|+.+++++++++.+.
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~   69 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVA   69 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            5688999987 9999999999999999 9999999988766553

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=94.74  E-value=0.053  Score=44.12  Aligned_cols=42  Identities=26%  Similarity=0.346  Sum_probs=35.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      .++++||+|+ +.+|...+..+...|+ +|+.+++++++.+.+.
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~   53 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVA   53 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            5789999987 9999999998888999 8999999988765543

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=94.73  E-value=0.075  Score=43.55  Aligned_cols=41  Identities=20%  Similarity=0.279  Sum_probs=35.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .++++||+|+ |.+|...+..+...|+ +|+++++++++.+.+
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~   71 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEET   71 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHH
Confidence            4688999987 9999999999999999 899999988776544

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=94.72  E-value=0.052  Score=44.41  Aligned_cols=41  Identities=27%  Similarity=0.357  Sum_probs=35.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .++++||.|+ +.+|...+..+...|+ +|+.+++++++++.+
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   60 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAA   60 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4688999987 9999999999999999 899999998876554

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=94.69  E-value=0.1  Score=43.44  Aligned_cols=43  Identities=12%  Similarity=0.150  Sum_probs=37.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      .+++++|+|+|.+|.+.+..+...|+.+|+++.++.+|.+.+.
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la  167 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLA  167 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHH
T ss_pred             cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHH
Confidence            6789999999999999999888999778999999988865543

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=94.68  E-value=0.11  Score=43.86  Aligned_cols=43  Identities=16%  Similarity=0.190  Sum_probs=36.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC---hhHHHHH
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID---PKKFDRV  235 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~---~~~~~~~  235 (243)
                      -.++++||+|+|.+|.+++..+...|+++|+++.++   .+|.+.+
T Consensus       146 l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~l  191 (312)
T 3t4e_A          146 MRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAF  191 (312)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHH
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHH
Confidence            357899999999999999999999999889999999   5555443

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=94.65  E-value=0.067  Score=44.31  Aligned_cols=44  Identities=18%  Similarity=0.130  Sum_probs=38.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhc
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNAL  239 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~G  239 (243)
                      +++++|+|+|.+|.+++..+...|. +|+++.++.+|.+.+.++|
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~-~v~V~nRt~~ka~~la~~~  161 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGL-QVSVLNRSSRGLDFFQRLG  161 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCTTHHHHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCC
Confidence            8899999999999999999999995 9999999998876665655

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=94.63  E-value=0.061  Score=43.68  Aligned_cols=41  Identities=24%  Similarity=0.330  Sum_probs=35.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .++++||+|+ |.+|...+..+...|+ +|+.+++++++.+.+
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   54 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQENVDRT   54 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4688999987 9999999999999999 899999988766543

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=94.59  E-value=0.074  Score=43.76  Aligned_cols=41  Identities=12%  Similarity=0.109  Sum_probs=35.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .|+++||+|+ +.+|...+..+...|+ +|+.++++.++.+.+
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   67 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTA   67 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5789999987 8999999999999999 999999988765443

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=94.58  E-value=0.058  Score=44.35  Aligned_cols=41  Identities=24%  Similarity=0.283  Sum_probs=35.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .++++||+|+ +.+|...+..+...|+ +|+.+++++++.+.+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   68 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGI   68 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4688999987 9999999999999999 999999998776544

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=94.56  E-value=0.094  Score=43.70  Aligned_cols=43  Identities=23%  Similarity=0.253  Sum_probs=37.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      -.++++||+|+|.+|.+++..+...|+++|+++.++.+|.+.+
T Consensus       120 ~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~L  162 (282)
T 3fbt_A          120 IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEI  162 (282)
T ss_dssp             CTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            3578999999999999999999999998899999998887554

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=94.51  E-value=0.087  Score=43.70  Aligned_cols=41  Identities=17%  Similarity=0.255  Sum_probs=35.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .++++||+|+ |.+|...+..+...|+ +|+.+++++++.+.+
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   58 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSA   58 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4689999987 9999999999989999 899999988776543

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=94.48  E-value=0.085  Score=43.67  Aligned_cols=48  Identities=19%  Similarity=0.093  Sum_probs=39.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HHhc
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV-LNAL  239 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~-~~~G  239 (243)
                      ...+.+++|+|+|.++.+++..+...|+++|+++.++.+|.+.+ .+++
T Consensus       116 ~~~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~  164 (271)
T 1npy_A          116 LNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG  164 (271)
T ss_dssp             CCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcC
Confidence            34567899999999999999999999987899999998875544 3444

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=94.47  E-value=0.07  Score=43.76  Aligned_cols=42  Identities=29%  Similarity=0.281  Sum_probs=36.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      .++++||+|+ |.+|...+..+...|+ +|+.+++++++++.+.
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~   68 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGTREDKLKEIA   68 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            5689999987 9999999999999999 8999999988776553

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=94.47  E-value=0.076  Score=43.01  Aligned_cols=41  Identities=24%  Similarity=0.306  Sum_probs=34.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .++++||+|+ |.+|...+..+...|+ +|+++++++++.+.+
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~   52 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQ   52 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCcHhHHHH
Confidence            4678999987 9999999999999999 899999887765544

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=94.46  E-value=0.059  Score=44.53  Aligned_cols=42  Identities=33%  Similarity=0.465  Sum_probs=36.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      .|+++||+|+ +.+|...+..+...|+ +|+.+++++++.+.+.
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~   70 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAA   70 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            5688999987 8999999999889999 9999999988766553

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=94.43  E-value=0.093  Score=43.44  Aligned_cols=41  Identities=12%  Similarity=0.139  Sum_probs=35.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .+.++||+|+ |.+|...+..+...|+ +|+++++++++.+.+
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r~~~~~~~~   66 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKAT   66 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4688999987 9999999999999999 899999988776543

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=94.38  E-value=0.058  Score=45.02  Aligned_cols=41  Identities=27%  Similarity=0.280  Sum_probs=35.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .++++||+|+ |.+|...+..+...|+ +|+.+++++++++.+
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   81 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSPRELSSV   81 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            5688999987 9999999999999999 899999998876544

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=94.37  E-value=0.098  Score=43.40  Aligned_cols=42  Identities=24%  Similarity=0.238  Sum_probs=35.9

Q ss_pred             CCCCEEEEEc-CCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          193 EPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       193 ~~g~~vlV~G-~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      -+++++||+| +|.+|.+.+..+...|+ +|+.++++.++.+.+
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~-~V~i~~R~~~~~~~l  159 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAA  159 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCHHHHHHH
Confidence            3678999999 59999999999999999 799999988776544

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=94.35  E-value=0.069  Score=43.97  Aligned_cols=42  Identities=26%  Similarity=0.166  Sum_probs=35.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      .++++||+|+ +.+|...+..+...|+ +|+.+++++++++.+.
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~   69 (272)
T 4dyv_A           27 GKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRRLDALQETA   69 (272)
T ss_dssp             -CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            5688999987 9999999999999999 8999999988766553

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=94.34  E-value=0.058  Score=44.35  Aligned_cols=41  Identities=34%  Similarity=0.477  Sum_probs=35.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .|+++||.|+ +.+|...+..+...|+ +|+.+++++++.+.+
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~   66 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQT   66 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4688999987 9999999999999999 899999988876544

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=94.26  E-value=0.074  Score=44.33  Aligned_cols=41  Identities=20%  Similarity=0.246  Sum_probs=35.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .++++||+|+ |.+|...+..+...|+ +|+.+++++++++.+
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~   66 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEET   66 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4678999987 9999999999999999 899999998876544

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=94.25  E-value=0.063  Score=46.22  Aligned_cols=48  Identities=17%  Similarity=0.133  Sum_probs=40.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.+++..+.+.+.++|+.
T Consensus       162 l~gktvGIIG~G~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~  209 (351)
T 3jtm_A          162 LEGKTIGTVGAGRIGKLLLQRLKPFGC-NLLYHDRLQMAPELEKETGAK  209 (351)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGCC-EEEEECSSCCCHHHHHHHCCE
T ss_pred             ccCCEEeEEEeCHHHHHHHHHHHHCCC-EEEEeCCCccCHHHHHhCCCe
Confidence            457899999999999999999999999 899999877666666666653

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=94.24  E-value=0.11  Score=42.27  Aligned_cols=41  Identities=24%  Similarity=0.281  Sum_probs=34.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .++++||+|+ |.+|...+..+...|+ +|+++++++++.+.+
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~   56 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKV   56 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCChhHHHHH
Confidence            4688999987 9999999999889999 899999887765443

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=94.20  E-value=0.056  Score=44.55  Aligned_cols=41  Identities=37%  Similarity=0.459  Sum_probs=34.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .|+++||+|+ +.+|...+..+...|+ +|+.+++++++.+.+
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   73 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAV   73 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence            5689999987 9999999999999999 899999888765443

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=94.19  E-value=0.082  Score=42.93  Aligned_cols=41  Identities=20%  Similarity=0.188  Sum_probs=34.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .++++||+|+ |.+|...+..+...|+ +|+++++++++.+.+
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~   54 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNEC   54 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4678999987 9999999999999999 899999988766543

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=94.18  E-value=0.079  Score=41.60  Aligned_cols=49  Identities=20%  Similarity=0.304  Sum_probs=40.4

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      +.....++++++||-+|+|. |..++.+++. +. +|+++|.+++.++.+++
T Consensus        47 ~l~~l~~~~~~~vLDlGcG~-G~~~~~la~~-~~-~v~~vD~s~~~~~~a~~   95 (204)
T 3njr_A           47 TLAALAPRRGELLWDIGGGS-GSVSVEWCLA-GG-RAITIEPRADRIENIQK   95 (204)
T ss_dssp             HHHHHCCCTTCEEEEETCTT-CHHHHHHHHT-TC-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEecCCC-CHHHHHHHHc-CC-EEEEEeCCHHHHHHHHH
Confidence            34456678999999999976 8888888888 77 99999999998877764

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=94.13  E-value=0.12  Score=42.56  Aligned_cols=41  Identities=27%  Similarity=0.327  Sum_probs=33.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .|+++||.|+ +.+|...+..+...|+ +|+.++++++..+.+
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   71 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRTDGVKEVA   71 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCHHHHHHHH
Confidence            4789999987 9999999999999999 899998665443333

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=94.13  E-value=0.097  Score=44.24  Aligned_cols=47  Identities=26%  Similarity=0.344  Sum_probs=39.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++++++.++. .+.++|+.
T Consensus       140 l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~g~~  186 (313)
T 2ekl_A          140 LAGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYDILDIRE-KAEKINAK  186 (313)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSCCHH-HHHHTTCE
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCcchh-HHHhcCce
Confidence            467899999999999999999999999 999999887764 35566653

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=94.12  E-value=0.093  Score=47.03  Aligned_cols=48  Identities=33%  Similarity=0.392  Sum_probs=40.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      --.|++|+|+|.|.+|..+++.++.+|+ +|++++++..+...+...|+
T Consensus       254 ~l~GktVgIIG~G~IG~~vA~~l~~~G~-~Viv~d~~~~~~~~a~~~g~  301 (479)
T 1v8b_A          254 LISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEGF  301 (479)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTTC
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHhCcC-EEEEEeCChhhHHHHHHcCC
Confidence            4578999999999999999999999999 99999998877544445554

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=94.09  E-value=0.084  Score=43.59  Aligned_cols=42  Identities=17%  Similarity=0.137  Sum_probs=36.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      .+++++|+|+|.+|.+.+..+...|. +|++++++.+|.+.+.
T Consensus       118 ~~~~vlvlGaGg~g~a~a~~L~~~G~-~v~v~~R~~~~a~~l~  159 (272)
T 1p77_A          118 PNQHVLILGAGGATKGVLLPLLQAQQ-NIVLANRTFSKTKELA  159 (272)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            57899999999999999998889996 9999999988865553

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=94.03  E-value=0.13  Score=42.17  Aligned_cols=34  Identities=29%  Similarity=0.342  Sum_probs=30.3

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC
Q 026087          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI  227 (243)
Q Consensus       193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~  227 (243)
                      -.|+++||+|+ +.+|...++.+...|+ +|+++++
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r   47 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDI   47 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEec
Confidence            45789999987 9999999999999999 8999887

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=93.98  E-value=0.058  Score=46.03  Aligned_cols=46  Identities=20%  Similarity=0.247  Sum_probs=39.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++..+.+...++|+
T Consensus       144 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~  189 (330)
T 4e5n_A          144 DNATVGFLGMGAIGLAMADRLQGWGA-TLQYHEAKALDTQTEQRLGL  189 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHTTTSCC-EEEEECSSCCCHHHHHHHTE
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCCCcHhHHHhcCc
Confidence            57899999999999999999999999 89999988755566666665

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=93.97  E-value=0.096  Score=44.75  Aligned_cols=47  Identities=23%  Similarity=0.314  Sum_probs=39.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++++++.++ +.+.++|++
T Consensus       163 l~g~tvgIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~  209 (335)
T 2g76_A          163 LNGKTLGILGLGRIGREVATRMQSFGM-KTIGYDPIISP-EVSASFGVQ  209 (335)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSCH-HHHHHTTCE
T ss_pred             CCcCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcch-hhhhhcCce
Confidence            467899999999999999999999999 99999987665 355566653

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=93.94  E-value=0.11  Score=42.09  Aligned_cols=40  Identities=23%  Similarity=0.120  Sum_probs=33.9

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHH
Q 026087          192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (243)
Q Consensus       192 ~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~  232 (243)
                      .-.++++||+|+ |.+|...+..+...|+ +|+.++++++..
T Consensus        16 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~   56 (249)
T 1o5i_A           16 GIRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELL   56 (249)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHH
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHH
Confidence            446789999987 9999999999999999 899998887443

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=93.93  E-value=0.1  Score=46.89  Aligned_cols=48  Identities=29%  Similarity=0.307  Sum_probs=40.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      .-.|++|+|+|.|.+|..+++.++.+|+ +|++++++..+.......|+
T Consensus       274 ~L~GktVgIIG~G~IG~~vA~~l~~~G~-~V~v~d~~~~~~~~a~~~G~  321 (494)
T 3d64_A          274 MIAGKIAVVAGYGDVGKGCAQSLRGLGA-TVWVTEIDPICALQAAMEGY  321 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSCHHHHHHHHTTTC
T ss_pred             ccCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCChHhHHHHHHcCC
Confidence            3578999999999999999999999999 99999998876534444454

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=93.90  E-value=0.089  Score=45.17  Aligned_cols=47  Identities=21%  Similarity=0.355  Sum_probs=39.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHH-HcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~-~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      -.|.+|.|+|.|.+|...++.++ ..|. +|++++++.++.+...++|+
T Consensus       161 l~g~~vgIIG~G~IG~~vA~~l~~~~G~-~V~~~d~~~~~~~~~~~~g~  208 (348)
T 2w2k_A          161 PRGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVAPADAETEKALGA  208 (348)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSCCCHHHHHHHTC
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHhcCC-EEEEECCCCcchhhHhhcCc
Confidence            46789999999999999999999 9999 89999988776666655554

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=93.89  E-value=0.15  Score=39.63  Aligned_cols=51  Identities=10%  Similarity=0.251  Sum_probs=41.4

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      +.....++++++||-+|+|. |..++.+++.....+|+++|.+++.++.+++
T Consensus        32 ~l~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~   82 (204)
T 3e05_A           32 TLSKLRLQDDLVMWDIGAGS-ASVSIEASNLMPNGRIFALERNPQYLGFIRD   82 (204)
T ss_dssp             HHHHTTCCTTCEEEEETCTT-CHHHHHHHHHCTTSEEEEEECCHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEECCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence            34556788999999999875 8888888888644499999999998877765

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=93.87  E-value=0.068  Score=46.21  Aligned_cols=48  Identities=21%  Similarity=0.205  Sum_probs=40.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCE-EEEEcCChhHHHHHHHhccc
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASR-VIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~-vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      -.|.+|.|+|.|.+|...++.++.+|+ + |++++++..+.+.+.++|+.
T Consensus       162 l~g~tvgIIG~G~IG~~vA~~l~~~G~-~~V~~~d~~~~~~~~~~~~g~~  210 (364)
T 2j6i_A          162 IEGKTIATIGAGRIGYRVLERLVPFNP-KELLYYDYQALPKDAEEKVGAR  210 (364)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGCC-SEEEEECSSCCCHHHHHHTTEE
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEECCCccchhHHHhcCcE
Confidence            367899999999999999999999999 6 99999877666666666653

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=93.83  E-value=0.1  Score=44.18  Aligned_cols=46  Identities=17%  Similarity=0.269  Sum_probs=38.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcC-ChhHHHHHHHhcc
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRVLNALA  240 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~-~~~~~~~~~~~Ga  240 (243)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|+++++ +.++ +.+.++|+
T Consensus       144 l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~~g~  190 (320)
T 1gdh_A          144 LDNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASS-SDEASYQA  190 (320)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCH-HHHHHHTC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcCh-hhhhhcCc
Confidence            467899999999999999999999999 9999998 7665 34555554

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=93.82  E-value=0.12  Score=44.09  Aligned_cols=46  Identities=26%  Similarity=0.354  Sum_probs=38.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      -.|.+|.|+|.|.+|...++.++..|. +|++++++.++ +.+.++|+
T Consensus       148 l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~  193 (334)
T 2dbq_A          148 VYGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTRKE-EVERELNA  193 (334)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHHCC
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECCCcch-hhHhhcCc
Confidence            357899999999999999999999999 89999988877 55555554

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=93.82  E-value=0.11  Score=42.61  Aligned_cols=40  Identities=15%  Similarity=0.247  Sum_probs=34.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~  234 (243)
                      .++++||+|+ |.+|...+..+...|+ +|+.++++.++++.
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~   55 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGH-PLLLLARRVERLKA   55 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence            4688999987 9999999999999999 89999988776554

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=93.80  E-value=0.1  Score=42.49  Aligned_cols=42  Identities=26%  Similarity=0.358  Sum_probs=35.4

Q ss_pred             CCCEEEEEcC-C-HHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          194 PGSIVAVFGL-G-TVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       194 ~g~~vlV~G~-g-~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      .++++||+|+ | ++|...+..+...|+ +|+.+++++++.+.+.
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~   64 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETR   64 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHH
Confidence            5789999998 7 699999998889999 8999999988765543

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=93.73  E-value=0.11  Score=42.86  Aligned_cols=41  Identities=24%  Similarity=0.265  Sum_probs=34.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .++++||+|+ |.+|...+..+...|+ +|+++++++++.+.+
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~   84 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSV   84 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHH
Confidence            4678999987 9999999998888999 888888887766543

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=93.71  E-value=0.17  Score=41.78  Aligned_cols=41  Identities=24%  Similarity=0.363  Sum_probs=33.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC-ChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~-~~~~~~~~  235 (243)
                      .++++||+|+ +.+|...+..+...|+ +|+.+++ ++++.+.+
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~   66 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRTV   66 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHH
Confidence            4688999987 9999999999999999 8999988 55554433

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=93.71  E-value=0.1  Score=42.52  Aligned_cols=35  Identities=31%  Similarity=0.468  Sum_probs=32.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      +.+|+|+|+|++|..++..+...|..+++.+|.+.
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            47899999999999999999999998999999886

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=93.69  E-value=0.17  Score=41.44  Aligned_cols=35  Identities=29%  Similarity=0.345  Sum_probs=30.8

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      -.|+++||+|+ +.+|...+..+...|+ +|+.++++
T Consensus        11 l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   46 (278)
T 3sx2_A           11 LTGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLC   46 (278)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecc
Confidence            35789999987 9999999999999999 89999876

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=93.63  E-value=0.14  Score=42.49  Aligned_cols=41  Identities=22%  Similarity=0.272  Sum_probs=34.0

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-G--TVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g--~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .++++||+|+ |  .+|...+..+...|+ +|+.++++++..+.+
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~   72 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRV   72 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHH
Confidence            5789999987 5  899999998889999 899999887654444

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=93.62  E-value=0.097  Score=43.24  Aligned_cols=41  Identities=20%  Similarity=0.173  Sum_probs=33.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCh-hHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP-KKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~-~~~~~~  235 (243)
                      .++++||+|+ |.+|...+..+...|+ +|+.+++++ ++.+.+
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~   64 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYHNSAEAAVSL   64 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEESSCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeCCchHHHHHH
Confidence            4678999987 9999999998888999 899998887 655433

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=93.57  E-value=0.098  Score=45.71  Aligned_cols=48  Identities=15%  Similarity=-0.013  Sum_probs=40.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++.+...++|+.
T Consensus       189 l~gktvGIIGlG~IG~~vA~~l~a~G~-~V~~~d~~~~~~~~~~~~G~~  236 (393)
T 2nac_A          189 LEAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLT  236 (393)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHHHHHTCE
T ss_pred             CCCCEEEEEeECHHHHHHHHHHHhCCC-EEEEEcCCccchhhHhhcCce
Confidence            367899999999999999999999999 899999877666666666653

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=93.54  E-value=0.12  Score=43.72  Aligned_cols=42  Identities=21%  Similarity=0.194  Sum_probs=35.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEc-CChhHHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID-IDPKKFDRVL  236 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~-~~~~~~~~~~  236 (243)
                      .++++||+|+ +.+|...+..+...|+ +|+.++ +++++++.+.
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~~r~~~~~~~~~   88 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANALS   88 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHH
Confidence            4678999987 9999999999999999 899998 8887765543

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=93.52  E-value=0.13  Score=44.19  Aligned_cols=46  Identities=24%  Similarity=0.316  Sum_probs=38.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++. +.+.+.+.|+.
T Consensus       159 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~~~~~g~~  204 (352)
T 3gg9_A          159 KGQTLGIFGYGKIGQLVAGYGRAFGM-NVLVWGREN-SKERARADGFA  204 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSHH-HHHHHHHTTCE
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEECCCC-CHHHHHhcCce
Confidence            57899999999999999999999999 999998765 44555566653

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=93.45  E-value=0.13  Score=41.98  Aligned_cols=40  Identities=20%  Similarity=0.204  Sum_probs=32.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC-ChhHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDR  234 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~-~~~~~~~  234 (243)
                      .++++||+|+ +.+|...+..+...|+ +|+.+++ ++++.+.
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   69 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSNAEVADA   69 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHH
Confidence            4689999987 9999999998889999 8988888 4444333

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=93.45  E-value=0.16  Score=42.11  Aligned_cols=42  Identities=21%  Similarity=0.251  Sum_probs=33.7

Q ss_pred             CCCCEEEEEcC-CH--HHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          193 EPGSIVAVFGL-GT--VGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       193 ~~g~~vlV~G~-g~--~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      -.++++||+|+ |.  +|...+..+...|+ +|+.++++++..+.+
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   73 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRV   73 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence            35789999987 66  99999999999999 899998886544433

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=93.42  E-value=0.14  Score=41.63  Aligned_cols=40  Identities=20%  Similarity=0.194  Sum_probs=33.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC-ChhHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDR  234 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~-~~~~~~~  234 (243)
                      .++++||+|+ |.+|...+..+...|+ +|+++++ ++++.+.
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~   61 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEE   61 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHH
Confidence            4678999987 9999999999999999 8998888 6665543

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=93.41  E-value=0.12  Score=44.04  Aligned_cols=46  Identities=22%  Similarity=0.247  Sum_probs=38.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      -.|.+|.|+|.|.+|...++.++..|. +|++++++.++ +...++|+
T Consensus       144 l~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~  189 (333)
T 2d0i_A          144 LYGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSRHRKV-NVEKELKA  189 (333)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCH-HHHHHHTE
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcch-hhhhhcCc
Confidence            357899999999999999999999999 89999988776 55555554

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=93.37  E-value=0.08  Score=43.38  Aligned_cols=41  Identities=17%  Similarity=0.157  Sum_probs=35.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .+ +++|+|+|.+|.+++..+...|+++|++++++.+|.+.+
T Consensus       108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~l  148 (253)
T 3u62_A          108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKAL  148 (253)
T ss_dssp             CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTC
T ss_pred             CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            45 899999999999999999999998899999998876544

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=93.35  E-value=0.2  Score=41.62  Aligned_cols=34  Identities=26%  Similarity=0.341  Sum_probs=30.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      .|+++||+|+ +.+|...+..+...|+ +|++++++
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~   61 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVC   61 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            5789999987 8999999999999999 89998876

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=93.33  E-value=0.096  Score=44.57  Aligned_cols=46  Identities=24%  Similarity=0.276  Sum_probs=38.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      .|.+|.|+|.|.+|...++.++..|. +|++++++.++.+.+.++|+
T Consensus       154 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~  199 (330)
T 2gcg_A          154 TQSTVGIIGLGRIGQAIARRLKPFGV-QRFLYTGRQPRPEEAAEFQA  199 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-CEEEEESSSCCHHHHHTTTC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcchhHHHhcCc
Confidence            57899999999999999999999999 89999987766665555554

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=93.32  E-value=0.21  Score=41.09  Aligned_cols=41  Identities=22%  Similarity=0.298  Sum_probs=33.3

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC-ChhHHHH
Q 026087          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDR  234 (243)
Q Consensus       193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~-~~~~~~~  234 (243)
                      ..++++||+|+ +.+|...+..+...|+ +|+.+++ ++++.+.
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~   69 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAP   69 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHH
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHH
Confidence            35789999987 9999999999999999 8888874 5555443

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=93.18  E-value=0.09  Score=42.66  Aligned_cols=43  Identities=7%  Similarity=0.065  Sum_probs=34.3

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcC---CCEEEEEcCChhHHHHHH
Q 026087          193 EPGSIVAVFGL-GTVGLAVAEGAKAAG---ASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G---~~~vi~~~~~~~~~~~~~  236 (243)
                      .+++++||+|+ |.+|...+..+...|   + +|+.++++.++.+.+.
T Consensus        19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~-~V~~~~r~~~~~~~~~   65 (267)
T 1sny_A           19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELE   65 (267)
T ss_dssp             -CCSEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhcCCCCc-EEEEEecChhhhHHHH
Confidence            35678999987 999999999988899   7 8999998876544433

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=93.14  E-value=0.2  Score=41.86  Aligned_cols=51  Identities=18%  Similarity=0.339  Sum_probs=42.5

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      +.....++++++||-+|+|. |..+..+++..|+ +|++++.+++.++.+++.
T Consensus        82 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~  132 (318)
T 2fk8_A           82 NLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQV  132 (318)
T ss_dssp             HHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHH
T ss_pred             HHHhcCCCCcCEEEEEcccc-hHHHHHHHHHCCC-EEEEEECCHHHHHHHHHH
Confidence            44556788999999999876 8888888888788 999999999988877654

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=93.12  E-value=0.16  Score=41.57  Aligned_cols=40  Identities=30%  Similarity=0.244  Sum_probs=32.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC-ChhHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDR  234 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~-~~~~~~~  234 (243)
                      .++++||+|+ +.+|...+..+...|+ +|+.+++ ++++.+.
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~   68 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGA-KVAVNYASSAGAADE   68 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCChHHHHH
Confidence            4688999987 9999999999999999 8888776 5555443

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=93.11  E-value=0.21  Score=41.43  Aligned_cols=36  Identities=25%  Similarity=0.267  Sum_probs=31.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      .|+++||+|+ +.+|...+..+...|+ +|+.++++++
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~   82 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEE   82 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence            5789999987 9999999999999999 8988888765

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=93.09  E-value=0.2  Score=42.51  Aligned_cols=43  Identities=16%  Similarity=0.204  Sum_probs=35.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~-G~~~vi~~~~~~~~~~~~~  236 (243)
                      .+.+|||+|+ |.+|...+..+... |..+|+++++++++.+.+.
T Consensus        20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~   64 (344)
T 2gn4_A           20 DNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMA   64 (344)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHH
Confidence            4689999987 99999988888887 8668999999888765543

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=93.07  E-value=0.23  Score=41.85  Aligned_cols=45  Identities=22%  Similarity=0.473  Sum_probs=40.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCC-EEEEEcCChhHHHHHHHhcc
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~-~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      .+|.|+|.|.+|...+..++..|.. +|+++++++++.+.++++|+
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~   79 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI   79 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCC
Confidence            5799999999999998888888873 79999999999999988876

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=93.06  E-value=0.21  Score=39.00  Aligned_cols=51  Identities=24%  Similarity=0.360  Sum_probs=41.4

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcC--CCEEEEEcCChhHHHHHHHh
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG--ASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G--~~~vi~~~~~~~~~~~~~~~  238 (243)
                      +......+++++||.+|+| .|..+..+++..|  . +|++++.+++.++.+++.
T Consensus        69 ~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~-~v~~vD~~~~~~~~a~~~  121 (215)
T 2yxe_A           69 MCELLDLKPGMKVLEIGTG-CGYHAAVTAEIVGEDG-LVVSIERIPELAEKAERT  121 (215)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTS-EEEEEESCHHHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCC-ccHHHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHH
Confidence            3445567899999999998 4888889998886  5 999999999888777653

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=92.89  E-value=0.12  Score=44.97  Aligned_cols=37  Identities=22%  Similarity=0.293  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      --++.+|+|+|+|..|..++.++..+|+++|++++++
T Consensus       189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            3466799999999999999999999999899999987

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=92.83  E-value=0.12  Score=38.80  Aligned_cols=50  Identities=16%  Similarity=0.270  Sum_probs=40.4

Q ss_pred             hhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       187 ~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      ......+++++||-+|+|. |..+..+++..+..+|++++.+++.++.+++
T Consensus        18 ~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~   67 (178)
T 3hm2_A           18 ISALAPKPHETLWDIGGGS-GSIAIEWLRSTPQTTAVCFEISEERRERILS   67 (178)
T ss_dssp             HHHHCCCTTEEEEEESTTT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHH
T ss_pred             HHHhcccCCCeEEEeCCCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHH
Confidence            3445678899999999986 8888888888743499999999998887764

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=92.81  E-value=0.13  Score=39.99  Aligned_cols=82  Identities=20%  Similarity=0.246  Sum_probs=48.4

Q ss_pred             ceeeEEE-eccceeEEcCCCCChhhhhhcccccchhhhhhhhcC--CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEE
Q 026087          148 TFSQYTV-VHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA--KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIG  224 (243)
Q Consensus       148 ~~~~~~~-~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~--~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~  224 (243)
                      .|.+|.. .+....+.+++.+.+.....-     +... +....  .++++++||-+|+|. |..+..+++ .+..+|++
T Consensus        17 ~w~~~~~~~~~~~~~~~~~~~~f~~~~~~-----~~~~-~~~~l~~~~~~~~~vLDiG~G~-G~~~~~l~~-~~~~~v~~   88 (205)
T 3grz_A           17 EWEDYQPVFKDQEIIRLDPGLAFGTGNHQ-----TTQL-AMLGIERAMVKPLTVADVGTGS-GILAIAAHK-LGAKSVLA   88 (205)
T ss_dssp             TTCCCCCSSTTCEEEEESCC-----CCHH-----HHHH-HHHHHHHHCSSCCEEEEETCTT-SHHHHHHHH-TTCSEEEE
T ss_pred             cccccccCCCCceeEEecCCcccCCCCCc-----cHHH-HHHHHHHhccCCCEEEEECCCC-CHHHHHHHH-CCCCEEEE
Confidence            3555555 455667777766654432110     1100 11111  156889999999876 666667666 45559999


Q ss_pred             EcCChhHHHHHHH
Q 026087          225 IDIDPKKFDRVLN  237 (243)
Q Consensus       225 ~~~~~~~~~~~~~  237 (243)
                      +|.+++.++.+++
T Consensus        89 vD~s~~~~~~a~~  101 (205)
T 3grz_A           89 TDISDESMTAAEE  101 (205)
T ss_dssp             EESCHHHHHHHHH
T ss_pred             EECCHHHHHHHHH
Confidence            9999988877765

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=92.80  E-value=0.14  Score=42.15  Aligned_cols=40  Identities=18%  Similarity=0.176  Sum_probs=34.5

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       196 ~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      +++||+|+ |.+|...+..+...|+ +|+.+++++++++.+.
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~-~V~~~~r~~~~~~~~~   62 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW-SLVLTGRREERLQALA   62 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            68999987 8999999999999999 8999999988776543

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=92.80  E-value=0.2  Score=41.97  Aligned_cols=45  Identities=24%  Similarity=0.255  Sum_probs=40.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      .+|.|+|.|.+|...+..+...|. +|+++++++++.+.+.+.|+.
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~   66 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTLSKCDELVEHGAS   66 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTCE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCe
Confidence            579999999999999998889999 899999999999888887753

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=92.76  E-value=0.13  Score=42.04  Aligned_cols=38  Identities=24%  Similarity=0.154  Sum_probs=32.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~  232 (243)
                      .++++||+|+ +.+|...+..+...|+ +|+.+++++++.
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~   64 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGH-RVIISYRTEHAS   64 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESSCCHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCChHHH
Confidence            4678999987 9999999999989999 799998887653

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=92.72  E-value=0.11  Score=42.48  Aligned_cols=41  Identities=32%  Similarity=0.337  Sum_probs=33.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .++++||+|+ |.+|...+..+...|+ +|+.+++++++.+.+
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~   74 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYNSHPADEKA   74 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTC-EEEEEESSSCCHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4678999987 9999998888888899 899998887654433

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=92.72  E-value=0.16  Score=40.98  Aligned_cols=37  Identities=30%  Similarity=0.292  Sum_probs=31.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~  231 (243)
                      .++++||+|+ |.+|...+..+...|+ +|++++++.++
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~   50 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAAD   50 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCcchh
Confidence            3578999987 9999999998888999 89999885543

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=92.70  E-value=0.29  Score=40.09  Aligned_cols=39  Identities=23%  Similarity=0.263  Sum_probs=31.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC-hhHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID-PKKFD  233 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~-~~~~~  233 (243)
                      .++++||+|+ +.+|...+..+...|+ +|+.++++ +++.+
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~   70 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQ   70 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHH
Confidence            5789999987 8999999999999999 78887444 44443

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=92.70  E-value=0.25  Score=38.37  Aligned_cols=49  Identities=18%  Similarity=0.064  Sum_probs=39.8

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      +......+++++||-+|+| .|..+..+++. +. +|++++.+++.++.+++
T Consensus        69 ~~~~l~~~~~~~vLdiG~G-~G~~~~~la~~-~~-~v~~vD~~~~~~~~a~~  117 (210)
T 3lbf_A           69 MTELLELTPQSRVLEIGTG-SGYQTAILAHL-VQ-HVCSVERIKGLQWQARR  117 (210)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEEcCC-CCHHHHHHHHh-CC-EEEEEecCHHHHHHHHH
Confidence            3455677899999999987 47778888887 66 99999999998877765

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=92.69  E-value=0.18  Score=44.32  Aligned_cols=39  Identities=31%  Similarity=0.498  Sum_probs=34.4

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       191 ~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      .+.++++|+|+|+|.+|...++.++.+|+ +|++++.+++
T Consensus        31 ~~~~~~~IlIlG~G~lg~~~~~aa~~lG~-~v~v~d~~~~   69 (419)
T 4e4t_A           31 PILPGAWLGMVGGGQLGRMFCFAAQSMGY-RVAVLDPDPA   69 (419)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCTT
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCc
Confidence            35689999999999999999999999999 8998886543

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=92.65  E-value=0.13  Score=42.19  Aligned_cols=40  Identities=28%  Similarity=0.414  Sum_probs=32.9

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          190 AKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       190 ~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      .....++++||+|+ +.+|...+..+...|+ +|+.++++++
T Consensus         9 ~~~~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~   49 (269)
T 3vtz_A            9 MEEFTDKVAIVTGGSSGIGLAVVDALVRYGA-KVVSVSLDEK   49 (269)
T ss_dssp             -CTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCC-
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence            34567899999987 9999999999999999 8998887654

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=92.60  E-value=0.26  Score=40.77  Aligned_cols=51  Identities=18%  Similarity=0.342  Sum_probs=42.6

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      +.....++++++||-+|+|. |..+..+++..|+ +|++++.+++.++.+++.
T Consensus        64 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~  114 (302)
T 3hem_A           64 ALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKAM  114 (302)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEECCHHHHHHHHHH
T ss_pred             HHHHcCCCCcCEEEEeeccC-cHHHHHHHHhCCC-EEEEEECCHHHHHHHHHH
Confidence            44566789999999999875 8888899998887 999999999988777653

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=92.57  E-value=0.21  Score=41.07  Aligned_cols=37  Identities=22%  Similarity=0.266  Sum_probs=31.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~  231 (243)
                      .++++||+|+ |.+|...+..+...|+ +|+.+++++++
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~   65 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTE   65 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchH
Confidence            4688999987 9999999999999999 89988877643

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=92.57  E-value=0.16  Score=41.03  Aligned_cols=38  Identities=24%  Similarity=0.276  Sum_probs=31.7

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (243)
Q Consensus       193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~  231 (243)
                      ..++++||+|+ |.+|...+..+...|+ +|+++++++++
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~   58 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSW-NTISIDFRENP   58 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCT
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCccc
Confidence            34688999987 9999999999999999 89999887654

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=92.52  E-value=0.24  Score=41.74  Aligned_cols=45  Identities=20%  Similarity=0.256  Sum_probs=39.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      ..+|.|+|.|.+|...++.+...|. +|+++++++++.+.+.+.|+
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~l~~~g~   75 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRTPARAASLAALGA   75 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTC
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHHHHCCC
Confidence            3589999999999999988888999 89999999999988877665

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=92.48  E-value=0.17  Score=40.38  Aligned_cols=50  Identities=20%  Similarity=0.246  Sum_probs=41.3

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      +.....++++++||-+|+| .|..+..+++..+. +|++++.+++.++.+++
T Consensus        83 ~~~~l~~~~~~~vLdiG~G-~G~~~~~la~~~~~-~v~~vD~~~~~~~~a~~  132 (235)
T 1jg1_A           83 MLEIANLKPGMNILEVGTG-SGWNAALISEIVKT-DVYTIERIPELVEFAKR  132 (235)
T ss_dssp             HHHHHTCCTTCCEEEECCT-TSHHHHHHHHHHCS-CEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEEeCC-cCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHH
Confidence            3344568899999999998 78888999998874 89999999988877765

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=92.45  E-value=0.26  Score=40.24  Aligned_cols=41  Identities=20%  Similarity=0.204  Sum_probs=31.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEE-cCChhHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~-~~~~~~~~~~  235 (243)
                      .++++||+|+ +.+|...+..+...|+ +|+.+ .+++++.+.+
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~   68 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEV   68 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHH
Confidence            5789999987 9999999988888999 77776 4555554433

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=92.41  E-value=0.21  Score=41.42  Aligned_cols=40  Identities=18%  Similarity=0.212  Sum_probs=34.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .+++++|+|+|.+|.+.+..+...|  +|++++++.++.+.+
T Consensus       127 ~~k~vlV~GaGgiG~aia~~L~~~G--~V~v~~r~~~~~~~l  166 (287)
T 1nvt_A          127 KDKNIVIYGAGGAARAVAFELAKDN--NIIIANRTVEKAEAL  166 (287)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS--EEEEECSSHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCC--CEEEEECCHHHHHHH
Confidence            5789999999999999998888889  899999988776544

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=92.39  E-value=0.25  Score=40.32  Aligned_cols=42  Identities=29%  Similarity=0.193  Sum_probs=33.3

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEE-cCChhHHHHH
Q 026087          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DIDPKKFDRV  235 (243)
Q Consensus       193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~-~~~~~~~~~~  235 (243)
                      .+++++||+|+ |.+|...+..+...|+ +|+.+ .+++++.+.+
T Consensus        24 ~~~k~vlITGas~gIG~a~a~~l~~~G~-~V~~~~~~~~~~~~~~   67 (272)
T 4e3z_A           24 SDTPVVLVTGGSRGIGAAVCRLAARQGW-RVGVNYAANREAADAV   67 (272)
T ss_dssp             CCSCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCChhHHHHH
Confidence            35678999987 9999999999999999 77665 6776665544

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=92.38  E-value=0.22  Score=43.09  Aligned_cols=37  Identities=27%  Similarity=0.478  Sum_probs=33.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      ..++++|+|+|+|.+|...++.++.+|+ +|++++.++
T Consensus        11 ~~~~k~IlIlG~G~~g~~la~aa~~~G~-~vi~~d~~~   47 (389)
T 3q2o_A           11 ILPGKTIGIIGGGQLGRMMALAAKEMGY-KIAVLDPTK   47 (389)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESST
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCC
Confidence            5688999999999999999999999999 898888654

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=92.24  E-value=0.18  Score=41.52  Aligned_cols=42  Identities=21%  Similarity=0.189  Sum_probs=36.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      .+.+++|+|+|.+|.+.+..+...|+ +|++++++.++.+.+.
T Consensus       128 ~~~~v~iiGaG~~g~aia~~L~~~g~-~V~v~~r~~~~~~~l~  169 (275)
T 2hk9_A          128 KEKSILVLGAGGASRAVIYALVKEGA-KVFLWNRTKEKAIKLA  169 (275)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSHHHHHHHT
T ss_pred             CCCEEEEECchHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHH
Confidence            56799999999999999999999999 9999999988766543

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=92.24  E-value=0.22  Score=41.84  Aligned_cols=34  Identities=44%  Similarity=0.531  Sum_probs=30.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      .|+++||+|+ +.+|...+..+...|+ +|+.++++
T Consensus        26 ~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~   60 (322)
T 3qlj_A           26 DGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIG   60 (322)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCc
Confidence            5789999987 9999999998889999 99999876

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=92.22  E-value=0.32  Score=40.30  Aligned_cols=34  Identities=24%  Similarity=0.091  Sum_probs=30.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      .++++||+|+ +.+|...+..+...|+ +|+.++++
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~   82 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLP   82 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCG
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5789999987 9999999999999999 89888776

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=92.19  E-value=0.26  Score=41.33  Aligned_cols=35  Identities=23%  Similarity=0.301  Sum_probs=30.4

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      -.|+++||+|+ +.+|...+..+...|+ +|++++++
T Consensus        44 l~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~   79 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLC   79 (317)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecc
Confidence            35789999987 9999999999999999 89988765

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=92.19  E-value=0.33  Score=40.42  Aligned_cols=39  Identities=28%  Similarity=0.387  Sum_probs=33.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      .+|.|+|+|.+|...++.+...|. +|+++++++++++.+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~   54 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKS   54 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHH
Confidence            579999999999977777777798 899999999887654

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=92.18  E-value=0.26  Score=40.84  Aligned_cols=43  Identities=19%  Similarity=0.166  Sum_probs=33.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCC--EEEEEcCChhHHHHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGAS--RVIGIDIDPKKFDRVL  236 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~--~vi~~~~~~~~~~~~~  236 (243)
                      .++++||+|+ +.+|...+..+...|+.  +|+.+++++++++.+.
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~   77 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELK   77 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHH
Confidence            4689999987 99999887776666652  8999999988776554

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=92.08  E-value=0.28  Score=39.73  Aligned_cols=45  Identities=20%  Similarity=0.286  Sum_probs=35.4

Q ss_pred             CCCCCCEEEEEcC---CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          191 KVEPGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       191 ~~~~g~~vlV~G~---g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      ...+++++||+|+   +.+|...+..+...|+ +|+.++++++..+.++
T Consensus        10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~   57 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRIT   57 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHH
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHH
Confidence            3567889999974   6899999998889999 8999988765444443

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=91.99  E-value=0.25  Score=42.16  Aligned_cols=37  Identities=24%  Similarity=0.304  Sum_probs=32.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~  231 (243)
                      .|+++||+|+ +.+|...+..+...|+ +|+.+++++++
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~   81 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQP   81 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSC
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhh
Confidence            5789999987 9999999999999999 89999887763

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=91.88  E-value=0.13  Score=42.72  Aligned_cols=40  Identities=10%  Similarity=0.174  Sum_probs=35.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHH
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~  233 (243)
                      .+++++|+|+|.+|.+++..+...|+++|+++.++.+|.+
T Consensus       116 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~  155 (277)
T 3don_A          116 EDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFN  155 (277)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHH
Confidence            5789999999999999999999999978999999887753

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=91.85  E-value=0.22  Score=42.67  Aligned_cols=46  Identities=33%  Similarity=0.247  Sum_probs=36.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++ +...++|+
T Consensus       166 l~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~  211 (347)
T 1mx3_A          166 IRGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLSD-GVERALGL  211 (347)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCT-THHHHHTC
T ss_pred             CCCCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcch-hhHhhcCC
Confidence            357899999999999999999999999 89999876543 22344454

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=91.76  E-value=0.39  Score=38.47  Aligned_cols=52  Identities=21%  Similarity=0.227  Sum_probs=42.8

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhc
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNAL  239 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~G  239 (243)
                      +.....++++.+||-+|+| .|..+..+++..++ +|++++.+++.++.+++..
T Consensus        47 ~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~   98 (266)
T 3ujc_A           47 ILSDIELNENSKVLDIGSG-LGGGCMYINEKYGA-HTHGIDICSNIVNMANERV   98 (266)
T ss_dssp             HTTTCCCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTC
T ss_pred             HHHhcCCCCCCEEEEECCC-CCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHh
Confidence            4455678899999999987 67778888887788 9999999999988887654

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=91.75  E-value=0.42  Score=38.21  Aligned_cols=50  Identities=20%  Similarity=0.314  Sum_probs=40.8

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      +.....++++++||=+|+|. |..+..+++..|. +|++++.+++.++.+++
T Consensus        28 l~~~~~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~l~~a~~   77 (256)
T 1nkv_A           28 LGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKR   77 (256)
T ss_dssp             HHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHH
Confidence            34556688999999999876 7778888888888 89999999988777754

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=91.63  E-value=0.46  Score=40.82  Aligned_cols=46  Identities=13%  Similarity=0.271  Sum_probs=40.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      ..+|.|+|.|.+|...+..+...|. +|+++++++++.+.+.+.|+.
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~   67 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALEREGIA   67 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTCB
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCCE
Confidence            3579999999999999998889998 899999999999888877654

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=91.62  E-value=0.33  Score=39.60  Aligned_cols=44  Identities=27%  Similarity=0.244  Sum_probs=36.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH-HHhc
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV-LNAL  239 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~-~~~G  239 (243)
                      .| +++|+|+|.+|...+..+...|+ +|++++++.++.+.+ .++|
T Consensus       116 ~~-~v~iiG~G~~g~~~a~~l~~~g~-~v~v~~r~~~~~~~l~~~~~  160 (263)
T 2d5c_A          116 KG-PALVLGAGGAGRAVAFALREAGL-EVWVWNRTPQRALALAEEFG  160 (263)
T ss_dssp             CS-CEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHHT
T ss_pred             CC-eEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhc
Confidence            45 89999999999999999999999 899999998875544 3444

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=91.62  E-value=0.27  Score=42.85  Aligned_cols=36  Identities=31%  Similarity=0.343  Sum_probs=32.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      -+..+|+|+|+|..|..++.++..+|+++|+.+|++
T Consensus       186 l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~  221 (398)
T 2a9f_A          186 LDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF  221 (398)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            345689999999999999999999999999999876

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=91.59  E-value=0.23  Score=39.30  Aligned_cols=44  Identities=20%  Similarity=0.340  Sum_probs=35.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhc
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNAL  239 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~G  239 (243)
                      ..+|.|+|+|.+|...+..+...|. +|+++++++++.+.+.+.|
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~g   71 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGF-KVVVGSRNPKRTARLFPSA   71 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTC-CEEEEESSHHHHHHHSBTT
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcC
Confidence            4579999999999998888888898 7999999988877665434

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=91.54  E-value=0.22  Score=41.63  Aligned_cols=40  Identities=23%  Similarity=0.167  Sum_probs=30.4

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          190 AKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       190 ~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      .+..++.+|||+|+ |.+|...+..+...|. +|++++++.+
T Consensus         9 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~   49 (335)
T 1rpn_A            9 HHGSMTRSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRS   49 (335)
T ss_dssp             ------CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCS
T ss_pred             cccccCCeEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCCc
Confidence            44678899999987 9999999998888998 8999987654

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=91.51  E-value=0.25  Score=40.04  Aligned_cols=37  Identities=27%  Similarity=0.202  Sum_probs=31.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~  231 (243)
                      .++++||+|+ |.+|...+..+...|+ +|+.+++++++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~   57 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGD-KVAITYRSGEP   57 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHh
Confidence            3678999987 9999999999999999 89888776543

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=91.37  E-value=0.21  Score=45.20  Aligned_cols=42  Identities=31%  Similarity=0.378  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      .++++||+|+|++|.+++..+...|+ +|+.++++.++.+.+.
T Consensus       363 ~~k~vlV~GaGGig~aia~~L~~~G~-~V~i~~R~~~~a~~la  404 (523)
T 2o7s_A          363 ASKTVVVIGAGGAGKALAYGAKEKGA-KVVIANRTYERALELA  404 (523)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHHCC--CEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            45689999999999999999999999 8999999988766553

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=91.29  E-value=0.42  Score=39.13  Aligned_cols=43  Identities=14%  Similarity=0.337  Sum_probs=33.8

Q ss_pred             CCCEEEEEcC-CH--HHHHHHHHHHHcCCCEEEEEcCCh--hHHHHHHH
Q 026087          194 PGSIVAVFGL-GT--VGLAVAEGAKAAGASRVIGIDIDP--KKFDRVLN  237 (243)
Q Consensus       194 ~g~~vlV~G~-g~--~G~~a~~~a~~~G~~~vi~~~~~~--~~~~~~~~  237 (243)
                      .++++||+|+ |.  +|...+..+...|+ +|+.+++++  ++++.+.+
T Consensus        25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~l~~   72 (280)
T 3nrc_A           25 AGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVGQFKDRVEKLCA   72 (280)
T ss_dssp             TTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECTTCHHHHHHHHG
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCchHHHHHHHHHH
Confidence            4689999985 55  99999988889999 899998877  55555443

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=91.27  E-value=0.19  Score=40.45  Aligned_cols=37  Identities=27%  Similarity=0.246  Sum_probs=31.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~  231 (243)
                      .++++||+|+ |.+|...+..+...|+ +|+++++++++
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~   51 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGA   51 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHH
Confidence            4688999987 9999999999999999 89988876543

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=91.24  E-value=0.29  Score=42.29  Aligned_cols=45  Identities=20%  Similarity=0.164  Sum_probs=37.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.+++. +.+.+.+.|+
T Consensus       175 ~gktvGIIGlG~IG~~vA~~l~~fG~-~V~~~d~~~-~~~~~~~~g~  219 (365)
T 4hy3_A          175 AGSEIGIVGFGDLGKALRRVLSGFRA-RIRVFDPWL-PRSMLEENGV  219 (365)
T ss_dssp             SSSEEEEECCSHHHHHHHHHHTTSCC-EEEEECSSS-CHHHHHHTTC
T ss_pred             CCCEEEEecCCcccHHHHHhhhhCCC-EEEEECCCC-CHHHHhhcCe
Confidence            47899999999999999999999999 999998774 3344455554

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=91.20  E-value=0.34  Score=39.42  Aligned_cols=38  Identities=21%  Similarity=0.212  Sum_probs=30.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEc-CChhHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID-IDPKKF  232 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~-~~~~~~  232 (243)
                      .++++||+|+ +.+|...+..+...|+ +|+.++ ++.++.
T Consensus        24 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~   63 (269)
T 3gk3_A           24 AKRVAFVTGGMGGLGAAISRRLHDAGM-AVAVSHSERNDHV   63 (269)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEECSCHHHH
T ss_pred             cCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCchHHH
Confidence            4678999987 9999999999999999 888887 444443

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=91.08  E-value=0.21  Score=40.64  Aligned_cols=36  Identities=17%  Similarity=0.276  Sum_probs=31.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      .++++||+|+ |.+|...+..+...|+ +|+.++++.+
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~   63 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRSIK   63 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChh
Confidence            4688999987 9999999999999999 8999887654

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=91.04  E-value=0.49  Score=37.19  Aligned_cols=47  Identities=26%  Similarity=0.270  Sum_probs=38.5

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcC-----CCEEEEEcCChhHHHHHHHh
Q 026087          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAG-----ASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       191 ~~~~g~~vlV~G~g~~G~~a~~~a~~~G-----~~~vi~~~~~~~~~~~~~~~  238 (243)
                      .++++++||-+|+|. |..+..+++..+     ..+|++++.+++.++.+++.
T Consensus        77 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~  128 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLEN  128 (227)
T ss_dssp             TSCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHH
T ss_pred             hCCCCCEEEEECCCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHH
Confidence            578899999999876 888888898876     12899999999888777653

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=90.93  E-value=0.51  Score=38.54  Aligned_cols=51  Identities=16%  Similarity=0.322  Sum_probs=41.3

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      +.....++++++||-+|+|. |..+..+++..|+ +|++++.+++-++.+++.
T Consensus        56 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~  106 (287)
T 1kpg_A           56 ALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQL  106 (287)
T ss_dssp             HHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHH
T ss_pred             HHHHcCCCCcCEEEEECCcc-cHHHHHHHHHcCC-EEEEEECCHHHHHHHHHH
Confidence            44556688999999999875 7778888877798 999999999888777653

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=90.91  E-value=0.51  Score=37.35  Aligned_cols=49  Identities=18%  Similarity=0.298  Sum_probs=39.6

Q ss_pred             hcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       188 ~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      ....++++++||-+|+|. |..+..+++..|..+|++++.+++.++.+++
T Consensus        68 ~~~~~~~~~~VLDlGcG~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~  116 (230)
T 1fbn_A           68 KVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLD  116 (230)
T ss_dssp             CCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHH
T ss_pred             cccCCCCCCEEEEEcccC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHHH
Confidence            344577899999999876 8888888888774499999999988877654

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=90.89  E-value=0.21  Score=40.85  Aligned_cols=37  Identities=38%  Similarity=0.443  Sum_probs=31.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~  231 (243)
                      .|+++||+|+ +.+|...+..+...|+ +|+.++++.++
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~   64 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGA-RVAVADRAVAG   64 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECSSCCTT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHH
Confidence            4688999987 9999999999999999 89998876543

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=90.74  E-value=0.22  Score=40.10  Aligned_cols=39  Identities=23%  Similarity=0.260  Sum_probs=29.1

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEc-CChh
Q 026087          191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID-IDPK  230 (243)
Q Consensus       191 ~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~-~~~~  230 (243)
                      ...+++++||+|+ +.+|...+..+...|+ +|+.++ ++.+
T Consensus         9 ~~~~~k~vlITGas~giG~~ia~~l~~~G~-~v~~~~~~~~~   49 (256)
T 3ezl_A            9 MVMSQRIAYVTGGMGGIGTSICQRLHKDGF-RVVAGCGPNSP   49 (256)
T ss_dssp             ----CEEEEETTTTSHHHHHHHHHHHHTTE-EEEEEECTTCS
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHH
Confidence            3467789999987 9999999998889999 788776 4433

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=90.59  E-value=0.43  Score=40.57  Aligned_cols=45  Identities=24%  Similarity=0.166  Sum_probs=37.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhH-HHHHHHhcc
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK-FDRVLNALA  240 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~-~~~~~~~Ga  240 (243)
                      +.+|.|+|.|.+|...++.++..|. +|++.++++++ .+.+.+.|+
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~~~~~~~~~a~~~G~   61 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRSGSATVAKAEAHGL   61 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTC-CEEEECCTTCHHHHHHHHTTC
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcC-EEEEEECChHHHHHHHHHCCC
Confidence            3579999999999999999999998 78888887765 677777665

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=90.50  E-value=0.39  Score=40.13  Aligned_cols=44  Identities=20%  Similarity=0.280  Sum_probs=37.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      .+|.|+|+|.+|...+..+...|. +|+++++++++.+.+.+.|+
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~   74 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRTAEKCDLFIQEGA   74 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSGGGGHHHHHTTC
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHcCC
Confidence            469999999999998888888898 79999999988887776664

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=90.47  E-value=0.34  Score=41.51  Aligned_cols=37  Identities=24%  Similarity=0.418  Sum_probs=33.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~  231 (243)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++..+
T Consensus       172 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~  208 (345)
T 4g2n_A          172 TGRRLGIFGMGRIGRAIATRARGFGL-AIHYHNRTRLS  208 (345)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHTTTC-EEEEECSSCCC
T ss_pred             CCCEEEEEEeChhHHHHHHHHHHCCC-EEEEECCCCcc
Confidence            47899999999999999999999999 99999987543

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=90.46  E-value=0.65  Score=41.57  Aligned_cols=40  Identities=25%  Similarity=0.263  Sum_probs=33.8

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       191 ~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      .++++.++||+|+ |.+|...+..+...|+++|+.++++..
T Consensus       222 ~~~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~  262 (486)
T 2fr1_A          222 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGP  262 (486)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGG
T ss_pred             CcCCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence            3678899999987 999999888888889966888888764

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=90.44  E-value=0.59  Score=39.25  Aligned_cols=44  Identities=30%  Similarity=0.342  Sum_probs=36.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      ..+|.|+|+|.+|.+.+..+...|. .|..+ +++++.+.+++.|.
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~-~~~~~~~~i~~~g~   62 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGH-EVILI-ARPQHVQAIEATGL   62 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTC-EEEEE-CCHHHHHHHHHHCE
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC-eEEEE-EcHhHHHHHHhCCe
Confidence            3579999999999998888888898 89988 88888888877653

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=90.42  E-value=0.22  Score=41.92  Aligned_cols=38  Identities=32%  Similarity=0.519  Sum_probs=29.4

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       192 ~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      -.++.+|||+|+ |.+|...++.+...|+ +|++++++++
T Consensus        16 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~   54 (347)
T 4id9_A           16 PRGSHMILVTGSAGRVGRAVVAALRTQGR-TVRGFDLRPS   54 (347)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTC-CEEEEESSCC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCCCC
Confidence            456678999998 9999999999999999 8999887653

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=90.40  E-value=0.35  Score=40.06  Aligned_cols=38  Identities=18%  Similarity=0.225  Sum_probs=29.4

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       191 ~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      ..++..+|||+|+ |.+|...++.+...|. +|+++++++
T Consensus         8 ~~~~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~   46 (321)
T 2pk3_A            8 HHHGSMRALITGVAGFVGKYLANHLTEQNV-EVFGTSRNN   46 (321)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCT
T ss_pred             cccCcceEEEECCCChHHHHHHHHHHHCCC-EEEEEecCC
Confidence            4567789999987 9999999999988999 899887764

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=90.31  E-value=0.34  Score=41.25  Aligned_cols=38  Identities=29%  Similarity=0.369  Sum_probs=34.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHH
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~  232 (243)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++++++.++.
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~  182 (333)
T 1j4a_A          145 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRNPE  182 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcchh
Confidence            46899999999999999999999999 899999877654

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=90.29  E-value=0.6  Score=39.37  Aligned_cols=46  Identities=20%  Similarity=0.119  Sum_probs=38.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhc
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNAL  239 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~G  239 (243)
                      .-.-+|.|+|+|.+|.+.+..+...|. +|+++++++++.+.+++.|
T Consensus        12 ~~~~kI~iIG~G~mG~ala~~L~~~G~-~V~~~~r~~~~~~~l~~~g   57 (335)
T 1z82_A           12 HMEMRFFVLGAGSWGTVFAQMLHENGE-EVILWARRKEIVDLINVSH   57 (335)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHS
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhC
Confidence            345679999999999998887777898 8999999999988887766

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=90.19  E-value=0.28  Score=41.68  Aligned_cols=37  Identities=38%  Similarity=0.477  Sum_probs=32.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~  231 (243)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~  181 (331)
T 1xdw_A          145 RNCTVGVVGLGRIGRVAAQIFHGMGA-TVIGEDVFEIK  181 (331)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCccH
Confidence            56799999999999999999999999 89999876643

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=90.08  E-value=0.49  Score=38.37  Aligned_cols=39  Identities=23%  Similarity=0.149  Sum_probs=30.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEE-EcCChhHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIG-IDIDPKKFD  233 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~-~~~~~~~~~  233 (243)
                      .++++||+|+ +.+|...+..+...|+ +|++ ..++.++.+
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~~G~-~v~i~~~r~~~~~~   65 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAADGF-NIGVHYHRDAAGAQ   65 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCchHHHH
Confidence            4578999987 9999999999999999 6755 455555543

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=90.04  E-value=0.55  Score=38.52  Aligned_cols=36  Identities=19%  Similarity=0.319  Sum_probs=30.9

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          194 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       194 ~g~~vlV~G~---g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      .++++||+|+   |.+|...+..+...|+ +|++++++++
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~   58 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGA-QLAFTYATPK   58 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEESSGG
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCCHH
Confidence            4678999986   5999999998888999 8999988775

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=90.04  E-value=0.72  Score=36.17  Aligned_cols=46  Identities=30%  Similarity=0.428  Sum_probs=37.5

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHH
Q 026087          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       191 ~~~~g~~vlV~G~g~~G~~a~~~a~~~G~-~~vi~~~~~~~~~~~~~~  237 (243)
                      .++++++||-+|+|. |..+..+++..|. .+|++++.+++.++.+++
T Consensus        74 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~  120 (226)
T 1i1n_A           74 QLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVN  120 (226)
T ss_dssp             TSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred             hCCCCCEEEEEcCCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Confidence            378899999999875 7788888888763 289999999998877754

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=89.94  E-value=0.48  Score=35.68  Aligned_cols=48  Identities=25%  Similarity=0.234  Sum_probs=38.4

Q ss_pred             hhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       187 ~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      .......++++||-+|+|. |..+..+++.. . ++++++.+++.++.+++
T Consensus        26 ~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~-~-~v~~~D~~~~~~~~a~~   73 (192)
T 1l3i_A           26 MCLAEPGKNDVAVDVGCGT-GGVTLELAGRV-R-RVYAIDRNPEAISTTEM   73 (192)
T ss_dssp             HHHHCCCTTCEEEEESCTT-SHHHHHHHTTS-S-EEEEEESCHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEECCCC-CHHHHHHHHhc-C-EEEEEECCHHHHHHHHH
Confidence            3445678899999999876 77777777766 5 99999999988877765

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=89.94  E-value=0.31  Score=41.51  Aligned_cols=36  Identities=33%  Similarity=0.421  Sum_probs=32.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++.+
T Consensus       144 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~  179 (333)
T 1dxy_A          144 GQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPYPM  179 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCcc
Confidence            57899999999999999999999999 8999987654

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=89.94  E-value=0.21  Score=41.51  Aligned_cols=45  Identities=22%  Similarity=0.202  Sum_probs=39.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      .+|.|+|.|.+|...+..+...|. +|+++++++++.+.+.+.|+.
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~   60 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIRIEAMTPLAEAGAT   60 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTT-CEEEECSSTTTSHHHHHTTCE
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCE
Confidence            479999999999998888888898 899999999998888877653

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=89.94  E-value=0.78  Score=41.36  Aligned_cols=38  Identities=26%  Similarity=0.358  Sum_probs=33.0

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       192 ~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      ++++.++||+|+ |.+|...+..+...|+++|+.++++.
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~  294 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRG  294 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSG
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCC
Confidence            578899999987 99999998888889997788888775

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=89.92  E-value=0.36  Score=40.27  Aligned_cols=37  Identities=35%  Similarity=0.438  Sum_probs=33.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.+++.+
T Consensus       120 l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~  156 (290)
T 3gvx_A          120 LYGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRSSV  156 (290)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSCC
T ss_pred             eecchheeeccCchhHHHHHHHHhhCc-EEEEEecccc
Confidence            357899999999999999999999999 9999988764

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=89.91  E-value=0.54  Score=38.27  Aligned_cols=39  Identities=28%  Similarity=0.293  Sum_probs=31.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC-ChhHHH
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFD  233 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~-~~~~~~  233 (243)
                      .++++||+|+ +.+|...+..+...|+ +|+.+++ ++++.+
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~   57 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAE   57 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHH
Confidence            5789999987 8999999999999999 8887654 444443

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=89.85  E-value=0.76  Score=37.08  Aligned_cols=50  Identities=26%  Similarity=0.309  Sum_probs=40.4

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      +.....++++++||-+|+|. |..+..+++..++ +|++++.+++-++.+++
T Consensus        53 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~  102 (273)
T 3bus_A           53 MIALLDVRSGDRVLDVGCGI-GKPAVRLATARDV-RVTGISISRPQVNQANA  102 (273)
T ss_dssp             HHHHSCCCTTCEEEEESCTT-SHHHHHHHHHSCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEeCCCC-CHHHHHHHHhcCC-EEEEEeCCHHHHHHHHH
Confidence            44566788999999999865 7777788887788 99999999988777654

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=89.81  E-value=0.42  Score=40.26  Aligned_cols=38  Identities=37%  Similarity=0.494  Sum_probs=33.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~  231 (243)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++
T Consensus       142 l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~  179 (311)
T 2cuk_A          142 LQGLTLGLVGMGRIGQAVAKRALAFGM-RVVYHARTPKP  179 (311)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCS
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHCCC-EEEEECCCCcc
Confidence            467899999999999999999999999 89999877643

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=89.77  E-value=0.83  Score=38.30  Aligned_cols=35  Identities=23%  Similarity=0.254  Sum_probs=30.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .+.+|||+|+ |.+|...+..+...|. +|++++++.
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   59 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFS   59 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            3578999997 9999999999999998 899998854

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=89.77  E-value=0.41  Score=40.60  Aligned_cols=36  Identities=31%  Similarity=0.611  Sum_probs=32.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++++++.+
T Consensus       136 ~gktvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~  171 (324)
T 3evt_A          136 TGQQLLIYGTGQIGQSLAAKASALGM-HVIGVNTTGH  171 (324)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCC
T ss_pred             cCCeEEEECcCHHHHHHHHHHHhCCC-EEEEECCCcc
Confidence            57899999999999999999999999 9999987654

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=89.58  E-value=0.63  Score=42.10  Aligned_cols=38  Identities=16%  Similarity=0.078  Sum_probs=31.8

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEE-cCC
Q 026087          191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DID  228 (243)
Q Consensus       191 ~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~-~~~  228 (243)
                      .++++.++||+|+ |.+|...+..+...|+++++.+ +++
T Consensus       247 ~~~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~  286 (525)
T 3qp9_A          247 WWQADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPS  286 (525)
T ss_dssp             SSCTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred             eecCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCC
Confidence            3678899999987 9999998888888899667777 776

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=89.42  E-value=0.64  Score=41.31  Aligned_cols=40  Identities=15%  Similarity=0.042  Sum_probs=32.7

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHc---CCCEEEEEcCChhHH
Q 026087          192 VEPGSIVAVFGL-GTVGLAVAEGAKAA---GASRVIGIDIDPKKF  232 (243)
Q Consensus       192 ~~~g~~vlV~G~-g~~G~~a~~~a~~~---G~~~vi~~~~~~~~~  232 (243)
                      ...+.+|||+|+ |.+|...+..+...   |. +|++++++++..
T Consensus        70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~-~V~~l~R~~~~~  113 (478)
T 4dqv_A           70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDG-RLICLVRAESDE  113 (478)
T ss_dssp             CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTC-EEEEEECSSSHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCC-EEEEEECCCCcH
Confidence            456789999997 99999888777777   78 999999877654

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=89.42  E-value=0.63  Score=38.86  Aligned_cols=36  Identities=31%  Similarity=0.416  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      ...+|+|+|+|++|..++..+...|..++..+|.+.
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            457899999999999999999999999999998665

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=89.39  E-value=0.43  Score=37.64  Aligned_cols=46  Identities=24%  Similarity=0.374  Sum_probs=37.4

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCC------CEEEEEcCChhHHHHHHH
Q 026087          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGA------SRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       191 ~~~~g~~vlV~G~g~~G~~a~~~a~~~G~------~~vi~~~~~~~~~~~~~~  237 (243)
                      .++++++||-+|+|. |..+..+++..+.      .+|++++.+++.++.+++
T Consensus        81 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~  132 (227)
T 1r18_A           81 HLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKA  132 (227)
T ss_dssp             TCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHH
T ss_pred             hCCCCCEEEEECCCc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHH
Confidence            478899999999876 8888888887662      389999999988777654

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=89.36  E-value=0.41  Score=42.13  Aligned_cols=40  Identities=25%  Similarity=0.241  Sum_probs=31.6

Q ss_pred             CCC-CCCCEEEEEcC-CHHHHHHHHHHHH-cCCCEEEEEcCChh
Q 026087          190 AKV-EPGSIVAVFGL-GTVGLAVAEGAKA-AGASRVIGIDIDPK  230 (243)
Q Consensus       190 ~~~-~~g~~vlV~G~-g~~G~~a~~~a~~-~G~~~vi~~~~~~~  230 (243)
                      ..+ +.++++||+|+ +++|++.+..+.. .|+ +|+.++++.+
T Consensus        55 ~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA-~Vv~~~r~~~   97 (422)
T 3s8m_A           55 GVRNDGPKKVLVIGASSGYGLASRITAAFGFGA-DTLGVFFEKP   97 (422)
T ss_dssp             CCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCC
T ss_pred             cccccCCCEEEEECCChHHHHHHHHHHHHhCCC-EEEEEeCCch
Confidence            444 46788999987 8999998777777 999 8988877654

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=89.30  E-value=0.78  Score=38.41  Aligned_cols=46  Identities=22%  Similarity=0.228  Sum_probs=38.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC--hhHHHHHHHhccc
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID--PKKFDRVLNALAM  241 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~--~~~~~~~~~~Ga~  241 (243)
                      .+|.|+|.|.+|...++.+...|.++|++++++  +++.+.+.+.|+.
T Consensus        25 ~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~   72 (312)
T 3qsg_A           25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVS   72 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCE
Confidence            579999999999998888888887689999986  5788888877754

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=89.28  E-value=0.91  Score=39.88  Aligned_cols=34  Identities=44%  Similarity=0.480  Sum_probs=29.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEE-EEcC
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVI-GIDI  227 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi-~~~~  227 (243)
                      -+|.+|+|.|.|.+|..+++++...|+ +|+ +.|+
T Consensus       216 l~gk~vaVqG~GnVG~~~a~~L~~~Ga-kVVavsD~  250 (419)
T 3aoe_E          216 LRGARVVVQGLGQVGAAVALHAERLGM-RVVAVATS  250 (419)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEEET
T ss_pred             ccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEEcC
Confidence            468999999999999999999999999 888 5555

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=89.27  E-value=0.76  Score=38.44  Aligned_cols=52  Identities=19%  Similarity=0.238  Sum_probs=40.6

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHHh
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G-~~~vi~~~~~~~~~~~~~~~  238 (243)
                      +.....++++++||-+|+|. |..+..+++..+ ..+|++++.+++.++.+++.
T Consensus        67 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~  119 (317)
T 1dl5_A           67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRN  119 (317)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHH
T ss_pred             HHHhcCCCCcCEEEEecCCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHH
Confidence            44556788999999999876 777888888754 23799999999988777653

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=89.20  E-value=0.7  Score=38.41  Aligned_cols=40  Identities=23%  Similarity=0.176  Sum_probs=32.8

Q ss_pred             CCCCCEEEEEcCC-HHHHHHHHHHHHcCCCEEEEEcCChhHH
Q 026087          192 VEPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (243)
Q Consensus       192 ~~~g~~vlV~G~g-~~G~~a~~~a~~~G~~~vi~~~~~~~~~  232 (243)
                      --.|++++|+|.| .+|..++.++..+|+ +|+.+.+..+.+
T Consensus       158 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t~~L  198 (285)
T 3l07_A          158 KTEGAYAVVVGASNVVGKPVSQLLLNAKA-TVTTCHRFTTDL  198 (285)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSSH
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCchhH
Confidence            4589999999985 589999999999999 888886654444

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=89.17  E-value=0.26  Score=41.20  Aligned_cols=36  Identities=28%  Similarity=0.375  Sum_probs=31.1

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHH
Q 026087          196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (243)
Q Consensus       196 ~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~  232 (243)
                      -+|||+|+ |.+|...+..+...|. +|+++++++++.
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~   50 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGH-DLVLIHRPSSQI   50 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECTTSCG
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecChHhh
Confidence            48999997 9999999999988998 899998876544

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=88.96  E-value=0.4  Score=37.97  Aligned_cols=47  Identities=15%  Similarity=0.337  Sum_probs=37.9

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       191 ~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      ...++++||-+|+| .|..+..+++.....+|++++.+++.++.+++.
T Consensus        51 ~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~   97 (233)
T 2gpy_A           51 KMAAPARILEIGTA-IGYSAIRMAQALPEATIVSIERDERRYEEAHKH   97 (233)
T ss_dssp             HHHCCSEEEEECCT-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHH
T ss_pred             hccCCCEEEEecCC-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence            45678899999987 688888899887433999999999988777653

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=88.95  E-value=0.51  Score=35.75  Aligned_cols=46  Identities=20%  Similarity=0.236  Sum_probs=36.4

Q ss_pred             cCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       189 ~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      ...++++++||=+|+|. |..+..+++. +. +|+++|.+++.++.+++
T Consensus        17 ~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~-~v~~vD~s~~~l~~a~~   62 (185)
T 3mti_A           17 AEVLDDESIVVDATMGN-GNDTAFLAGL-SK-KVYAFDVQEQALGKTSQ   62 (185)
T ss_dssp             HTTCCTTCEEEESCCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHH
T ss_pred             HHhCCCCCEEEEEcCCC-CHHHHHHHHh-CC-EEEEEECCHHHHHHHHH
Confidence            34578899999888864 7777777777 66 99999999988877754

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=88.84  E-value=0.84  Score=37.07  Aligned_cols=34  Identities=32%  Similarity=0.388  Sum_probs=30.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      +.+|+|+|+|++|..++..+...|.+++..+|.+
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            4789999999999999999999999899888754

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=88.82  E-value=0.77  Score=40.84  Aligned_cols=40  Identities=38%  Similarity=0.614  Sum_probs=34.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      .+|.|+|+|.+|...++.+...|. +|+.+++++++++.++
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~~~~~~~~~   77 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAK   77 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHH
Confidence            579999999999998888888899 8999999998776654

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=88.76  E-value=0.98  Score=35.45  Aligned_cols=50  Identities=20%  Similarity=0.330  Sum_probs=39.8

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      +......+++++||-+|+|. |..+..+++.. . +|++++.+++.++.+++.
T Consensus        62 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~-~-~v~~vD~~~~~~~~a~~~  111 (231)
T 1vbf_A           62 MLDELDLHKGQKVLEIGTGI-GYYTALIAEIV-D-KVVSVEINEKMYNYASKL  111 (231)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHS-S-EEEEEESCHHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEEcCCC-CHHHHHHHHHc-C-EEEEEeCCHHHHHHHHHH
Confidence            34455678999999999876 77777787764 5 999999999988888764

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=88.69  E-value=0.42  Score=37.97  Aligned_cols=36  Identities=17%  Similarity=0.209  Sum_probs=31.4

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcC-CCEEEEEcCChhHH
Q 026087          196 SIVAVFGL-GTVGLAVAEGAKAAG-ASRVIGIDIDPKKF  232 (243)
Q Consensus       196 ~~vlV~G~-g~~G~~a~~~a~~~G-~~~vi~~~~~~~~~  232 (243)
                      .+|||+|+ |.+|...++.+...| + +|+++++++++.
T Consensus        24 k~vlVtGatG~iG~~l~~~L~~~G~~-~V~~~~R~~~~~   61 (236)
T 3qvo_A           24 KNVLILGAGGQIARHVINQLADKQTI-KQTLFARQPAKI   61 (236)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTE-EEEEEESSGGGS
T ss_pred             cEEEEEeCCcHHHHHHHHHHHhCCCc-eEEEEEcChhhh
Confidence            57999997 999999999999999 7 899998887654

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=88.68  E-value=0.47  Score=39.66  Aligned_cols=35  Identities=20%  Similarity=0.196  Sum_probs=30.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .+.+|||+|+ |.+|...+..+...|+ +|++++++.
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~g~-~V~~~~r~~   54 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQGH-EILVIDNFA   54 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGGTC-EEEEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCC
Confidence            4578999998 9999999998888998 899998754

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=88.67  E-value=0.52  Score=35.92  Aligned_cols=39  Identities=23%  Similarity=0.267  Sum_probs=33.0

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCC---------CEEEEEcCChh
Q 026087          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGA---------SRVIGIDIDPK  230 (243)
Q Consensus       191 ~~~~g~~vlV~G~g~~G~~a~~~a~~~G~---------~~vi~~~~~~~  230 (243)
                      .++++++||-+|+|+ |..+..+++..|.         .+|+++|.++.
T Consensus        19 ~~~~~~~vLDlGcG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~   66 (196)
T 2nyu_A           19 ILRPGLRVLDCGAAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI   66 (196)
T ss_dssp             CCCTTCEEEEETCCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC
T ss_pred             CCCCCCEEEEeCCCC-CHHHHHHHHHhccccccccCCCceEEEEechhc
Confidence            368899999999988 8899999999873         48999998764

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=88.66  E-value=1.5  Score=38.85  Aligned_cols=34  Identities=38%  Similarity=0.316  Sum_probs=30.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID  226 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~  226 (243)
                      --.|.+|+|.|.|.+|..+++.+..+|+ +|++++
T Consensus       232 ~l~Gk~vaVQG~GnVG~~aa~~L~e~Ga-kvVavs  265 (450)
T 4fcc_A          232 GFEGMRVSVSGSGNVAQYAIEKAMEFGA-RVITAS  265 (450)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CcCCCEEEEeCCChHHHHHHHHHHhcCC-eEEEEe
Confidence            3468999999999999999999999999 888775

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=88.59  E-value=0.53  Score=40.25  Aligned_cols=37  Identities=38%  Similarity=0.486  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~  231 (243)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++
T Consensus       147 ~gktvgIiGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~  183 (343)
T 2yq5_A          147 YNLTVGLIGVGHIGSAVAEIFSAMGA-KVIAYDVAYNP  183 (343)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCG
T ss_pred             CCCeEEEEecCHHHHHHHHHHhhCCC-EEEEECCChhh
Confidence            47899999999999999999999999 99999887643

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=88.50  E-value=0.66  Score=35.46  Aligned_cols=48  Identities=29%  Similarity=0.303  Sum_probs=37.5

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHHh
Q 026087          190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       190 ~~~~~g~~vlV~G~g~~G~~a~~~a~~~G-~~~vi~~~~~~~~~~~~~~~  238 (243)
                      ..++++++||-+|+|. |..+..+++..+ ..+++++|.+++.++.+++.
T Consensus        18 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~   66 (197)
T 3eey_A           18 MFVKEGDTVVDATCGN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTKK   66 (197)
T ss_dssp             HHCCTTCEEEESCCTT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH
T ss_pred             hcCCCCCEEEEcCCCC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence            3568899999998876 777888888764 23999999999888777643

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=88.42  E-value=0.76  Score=39.23  Aligned_cols=36  Identities=25%  Similarity=0.344  Sum_probs=32.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .+.+|+|+|+|++|..++..+...|.+++..+|.+.
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             hCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            468999999999999999999999999999988653

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=88.35  E-value=0.69  Score=39.66  Aligned_cols=43  Identities=21%  Similarity=0.237  Sum_probs=37.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhc
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNAL  239 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~G  239 (243)
                      .+|.|+|+|.+|.+.+..+...|. +|..+++++++.+.+++.|
T Consensus        30 mkI~VIGaG~mG~alA~~La~~G~-~V~l~~r~~~~~~~i~~~~   72 (356)
T 3k96_A           30 HPIAILGAGSWGTALALVLARKGQ-KVRLWSYESDHVDEMQAEG   72 (356)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTTTC-CEEEECSCHHHHHHHHHHS
T ss_pred             CeEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcC
Confidence            469999999999998888888898 8999999999888887755

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=88.32  E-value=1.3  Score=39.83  Aligned_cols=38  Identities=26%  Similarity=0.259  Sum_probs=31.5

Q ss_pred             CCCC--CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          192 VEPG--SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       192 ~~~g--~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      ++++  .++||+|+ |.+|...+..+...|+++|+.+.++.
T Consensus       234 ~~~~~~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~  274 (496)
T 3mje_A          234 KRPPVHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRG  274 (496)
T ss_dssp             CCCCCCSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSG
T ss_pred             CCCCCCCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCC
Confidence            3455  89999987 99999988888889997888887763

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=88.14  E-value=0.57  Score=40.37  Aligned_cols=34  Identities=24%  Similarity=0.211  Sum_probs=29.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      -.|+|+|+|..|++++..+...|. +|+++++.+.
T Consensus        24 ~dV~IVGaG~aGl~~A~~La~~G~-~V~v~E~~~~   57 (407)
T 3rp8_A           24 MKAIVIGAGIGGLSAAVALKQSGI-DCDVYEAVKE   57 (407)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCCC
Confidence            479999999999999999999999 8999987653

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=87.99  E-value=0.64  Score=40.44  Aligned_cols=32  Identities=28%  Similarity=0.356  Sum_probs=29.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID  226 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~  226 (243)
                      ++.+|+|+|+|.+|...++.++.+|+ ++++++
T Consensus        23 ~~~~I~ilGgG~lg~~l~~aa~~lG~-~v~~~d   54 (403)
T 3k5i_A           23 NSRKVGVLGGGQLGRMLVESANRLNI-QVNVLD   54 (403)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEE
Confidence            57899999999999999999999999 888887

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=87.99  E-value=0.72  Score=38.57  Aligned_cols=35  Identities=31%  Similarity=0.409  Sum_probs=29.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .+.+|||+|+ |.+|...+..+...|. +|+++++++
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~   55 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGD-KVVGIDNFA   55 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCS
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCC
Confidence            3578999987 9999999998888998 899998764

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=87.94  E-value=0.42  Score=40.60  Aligned_cols=37  Identities=19%  Similarity=0.453  Sum_probs=31.2

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHc-CCCEEEEEcCChhHH
Q 026087          195 GSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKF  232 (243)
Q Consensus       195 g~~vlV~G~-g~~G~~a~~~a~~~-G~~~vi~~~~~~~~~  232 (243)
                      +.+|||+|+ |.+|...+..+... |. +|++++++.++.
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~   62 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDW-EVFGMDMQTDRL   62 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSC-EEEEEESCCTTT
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCC-EEEEEeCChhhh
Confidence            468999997 99999988888877 88 899999876554

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=87.91  E-value=0.67  Score=39.29  Aligned_cols=35  Identities=26%  Similarity=0.558  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.+++.
T Consensus       139 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~  173 (324)
T 3hg7_A          139 KGRTLLILGTGSIGQHIAHTGKHFGM-KVLGVSRSG  173 (324)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             ccceEEEEEECHHHHHHHHHHHhCCC-EEEEEcCCh
Confidence            47899999999999999999999999 999998765

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=87.88  E-value=1.2  Score=35.86  Aligned_cols=38  Identities=37%  Similarity=0.405  Sum_probs=32.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~  231 (243)
                      ..+.+|.|+|.|.+|...+..+...|. +|+++++++++
T Consensus        17 ~~~~kIgiIG~G~mG~alA~~L~~~G~-~V~~~~r~~~~   54 (245)
T 3dtt_A           17 FQGMKIAVLGTGTVGRTMAGALADLGH-EVTIGTRDPKA   54 (245)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCChhh
Confidence            345789999999999999998888998 89999999887

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=87.86  E-value=0.85  Score=40.25  Aligned_cols=40  Identities=25%  Similarity=0.310  Sum_probs=34.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      .+|.|+|.|.+|+..+..+.. |. +|+++++++++.+.+++
T Consensus        37 mkIaVIGlG~mG~~lA~~La~-G~-~V~~~D~~~~~v~~l~~   76 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ-NH-EVVALDIVQAKVDMLNQ   76 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TS-EEEEECSCHHHHHHHHT
T ss_pred             CEEEEECcCHHHHHHHHHHHc-CC-eEEEEecCHHHhhHHhc
Confidence            479999999999987776666 98 99999999999887765

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=87.83  E-value=0.59  Score=39.91  Aligned_cols=42  Identities=21%  Similarity=0.187  Sum_probs=35.8

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhc
Q 026087          197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNAL  239 (243)
Q Consensus       197 ~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~G  239 (243)
                      +|.|+|+|.+|...+..+...|. +|+++++++++.+.+.+.|
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~-~V~~~~r~~~~~~~l~~~~   58 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNEEEVRLVNEKR   58 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEE-EEEEECSCHHHHHHHHHHT
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcC
Confidence            69999999999988887777788 8999999998888777654

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=87.81  E-value=0.96  Score=37.86  Aligned_cols=40  Identities=18%  Similarity=0.115  Sum_probs=33.3

Q ss_pred             CCCCCEEEEEcCC-HHHHHHHHHHHHcCCCEEEEEcCChhHH
Q 026087          192 VEPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (243)
Q Consensus       192 ~~~g~~vlV~G~g-~~G~~a~~~a~~~G~~~vi~~~~~~~~~  232 (243)
                      --.|.+++|+|.| .+|.-++.++..+|+ +|..+.+..+.+
T Consensus       162 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t~~L  202 (301)
T 1a4i_A          162 PIAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSKTAHL  202 (301)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSSH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEECCcccH
Confidence            3578999999997 689999999999999 898886655444

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=87.79  E-value=0.58  Score=41.74  Aligned_cols=43  Identities=19%  Similarity=0.110  Sum_probs=34.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHHH
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~-G~~~vi~~~~~~~~~~~~~~  237 (243)
                      ++.+|+|+|+|.+|...+..+... |. +|++++++.++.+.+.+
T Consensus        22 ~~k~VlIiGAGgiG~aia~~L~~~~g~-~V~v~~R~~~ka~~la~   65 (467)
T 2axq_A           22 MGKNVLLLGSGFVAQPVIDTLAANDDI-NVTVACRTLANAQALAK   65 (467)
T ss_dssp             -CEEEEEECCSTTHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHG
T ss_pred             CCCEEEEECChHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHH
Confidence            356899999999999988888877 67 89999999888766543

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=87.78  E-value=0.96  Score=40.05  Aligned_cols=41  Identities=37%  Similarity=0.652  Sum_probs=35.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      .+|-|+|.|-+|+-.+..+...|. +|+++|.+++|.+.+++
T Consensus        22 ~~IaViGlGYVGLp~A~~~A~~G~-~V~g~Did~~kV~~ln~   62 (444)
T 3vtf_A           22 ASLSVLGLGYVGVVHAVGFALLGH-RVVGYDVNPSIVERLRA   62 (444)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHT
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHC
Confidence            579999999999987777777899 99999999999887753

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=87.77  E-value=1.1  Score=37.12  Aligned_cols=48  Identities=19%  Similarity=0.265  Sum_probs=38.3

Q ss_pred             hcCC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          188 NTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       188 ~~~~-~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      .... ++++++||=+|+|. |..+..+++..|+ +|++++.+++.++.+++
T Consensus       110 ~~l~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~  158 (312)
T 3vc1_A          110 DHLGQAGPDDTLVDAGCGR-GGSMVMAHRRFGS-RVEGVTLSAAQADFGNR  158 (312)
T ss_dssp             TTSCCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred             HHhccCCCCCEEEEecCCC-CHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence            4444 78999999998864 6777778887788 89999999998877765

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=87.75  E-value=0.48  Score=37.48  Aligned_cols=44  Identities=30%  Similarity=0.292  Sum_probs=34.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEE-EcCChhHHHHHH-Hhcc
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIG-IDIDPKKFDRVL-NALA  240 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~-~~~~~~~~~~~~-~~Ga  240 (243)
                      .+|.|+|+|.+|...+..+...|. +|+. +++++++.+.+. ++|.
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~-~V~~v~~r~~~~~~~l~~~~g~   69 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQI-PAIIANSRGPASLSSVTDRFGA   69 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTC-CEEEECTTCGGGGHHHHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCCHHHHHHHHHHhCC
Confidence            469999999999998888888898 6776 889988877654 4553

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=87.66  E-value=1.3  Score=35.15  Aligned_cols=46  Identities=22%  Similarity=0.242  Sum_probs=38.7

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       190 ~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      ..++++++||-+|+|. |..+..+++..+. +|++++.+++.++.+++
T Consensus        42 ~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~   87 (257)
T 3f4k_A           42 NELTDDAKIADIGCGT-GGQTLFLADYVKG-QITGIDLFPDFIEIFNE   87 (257)
T ss_dssp             CCCCTTCEEEEETCTT-SHHHHHHHHHCCS-EEEEEESCHHHHHHHHH
T ss_pred             hcCCCCCeEEEeCCCC-CHHHHHHHHhCCC-eEEEEECCHHHHHHHHH
Confidence            4678899999999875 7888889998887 99999999988877654

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=87.66  E-value=0.76  Score=39.94  Aligned_cols=38  Identities=32%  Similarity=0.327  Sum_probs=33.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      +.|..+++|+|+|.++...+++++.+|+ +|+++|..++
T Consensus       201 ~~P~~rL~IfGAGhva~ala~~a~~lg~-~V~v~D~R~~  238 (386)
T 2we8_A          201 YAPRPRMLVFGAIDFAAAVAQQGAFLGY-RVTVCDARPV  238 (386)
T ss_dssp             ECCCCEEEEECCSTHHHHHHHHHHHTTC-EEEEEESCTT
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCchh
Confidence            3466799999999999999999999999 8999987654

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=87.52  E-value=0.6  Score=40.16  Aligned_cols=33  Identities=33%  Similarity=0.390  Sum_probs=29.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      ..|+|+|+|..|++++..++..|. +|+++++.+
T Consensus        27 ~dV~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~   59 (398)
T 2xdo_A           27 KNVAIIGGGPVGLTMAKLLQQNGI-DVSVYERDN   59 (398)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTC-EEEEEECSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            579999999999999999999999 899998754

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=87.50  E-value=0.53  Score=39.72  Aligned_cols=36  Identities=28%  Similarity=0.282  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++.+
T Consensus       138 ~g~tvGIiG~G~IG~~vA~~l~~~G~-~V~~~dr~~~  173 (315)
T 3pp8_A          138 EEFSVGIMGAGVLGAKVAESLQAWGF-PLRCWSRSRK  173 (315)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTC-CEEEEESSCC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCch
Confidence            47899999999999999999999999 8999987654

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=87.46  E-value=1  Score=37.27  Aligned_cols=40  Identities=13%  Similarity=0.019  Sum_probs=33.5

Q ss_pred             CCCCEEEEEcCC-HHHHHHHHHHHHcCCCEEEEEcCChhHHH
Q 026087          193 EPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (243)
Q Consensus       193 ~~g~~vlV~G~g-~~G~~a~~~a~~~G~~~vi~~~~~~~~~~  233 (243)
                      -.|++++|+|.| .+|..++.++..+|+ +|+.+.+..+.++
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gA-tVtv~~~~t~~L~  188 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNY-TVSVCHSKTKDIG  188 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSCHH
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCC-eEEEEeCCcccHH
Confidence            789999999985 699999999999999 8988876554443

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=87.41  E-value=1.4  Score=37.07  Aligned_cols=34  Identities=21%  Similarity=0.327  Sum_probs=29.8

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       195 g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      +.+|||+|+ |.+|...+..+...|. +|+++++++
T Consensus        27 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   61 (352)
T 1sb8_A           27 PKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDNFA   61 (352)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            468999998 9999999998888899 899998764

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=87.29  E-value=1.1  Score=37.23  Aligned_cols=41  Identities=27%  Similarity=0.251  Sum_probs=33.8

Q ss_pred             CCCCCEEEEEcCC-HHHHHHHHHHHHcCCCEEEEEcCChhHHH
Q 026087          192 VEPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (243)
Q Consensus       192 ~~~g~~vlV~G~g-~~G~~a~~~a~~~G~~~vi~~~~~~~~~~  233 (243)
                      --.|++++|+|.| .+|..++.++..+|+ +|..+.+..+.++
T Consensus       157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gA-tVtv~h~~t~~L~  198 (285)
T 3p2o_A          157 DLEGKDAVIIGASNIVGRPMATMLLNAGA-TVSVCHIKTKDLS  198 (285)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSCHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCchhHH
Confidence            4589999999985 589999999999999 8988876555443

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=87.07  E-value=0.82  Score=38.29  Aligned_cols=37  Identities=43%  Similarity=0.596  Sum_probs=32.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.+++.+
T Consensus       122 l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~dr~~~  158 (303)
T 1qp8_A          122 IQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPK  158 (303)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcc
Confidence            357899999999999999999999999 8999987653

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=87.00  E-value=0.51  Score=41.08  Aligned_cols=38  Identities=16%  Similarity=0.137  Sum_probs=32.0

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       192 ~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      ..++.+|||+|+ |.+|...+..+...|+ +|++++++++
T Consensus        66 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~R~~~  104 (427)
T 4f6c_A           66 HRPLGNTLLTGATGFLGAYLIEALQGYSH-RIYCFIRADN  104 (427)
T ss_dssp             CCCCEEEEEECTTSHHHHHHHHHHTTTEE-EEEEEEECSS
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHHcCCC-EEEEEECCCC
Confidence            345678999998 9999998888888888 8999988876

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=86.97  E-value=2  Score=31.53  Aligned_cols=25  Identities=12%  Similarity=0.122  Sum_probs=22.6

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCC
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAGA  219 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G~  219 (243)
                      .++++|.|+|.+|...++.+...|.
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~   27 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQ   27 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC
Confidence            4678999999999999999999999

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=86.92  E-value=0.78  Score=39.17  Aligned_cols=36  Identities=33%  Similarity=0.428  Sum_probs=32.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      .|.+|.|+|.|.+|...++.++..|. +|++.+++.+
T Consensus       170 ~gktiGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~  205 (340)
T 4dgs_A          170 KGKRIGVLGLGQIGRALASRAEAFGM-SVRYWNRSTL  205 (340)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCcc
Confidence            47899999999999999999999999 8999987764

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=86.91  E-value=1.6  Score=36.53  Aligned_cols=45  Identities=9%  Similarity=0.108  Sum_probs=35.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHc-CCCEEEEEcCChhHHHHHHH
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~-G~~~vi~~~~~~~~~~~~~~  237 (243)
                      ....+|.|+|+|.+|...+..+... |.++|.++++++++.+.+.+
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~  178 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFAD  178 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHH
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Confidence            4567899999999999877766554 87789999999988766543

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=86.89  E-value=0.83  Score=36.05  Aligned_cols=37  Identities=19%  Similarity=0.197  Sum_probs=30.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCC-EEEEEcCChhH
Q 026087          195 GSIVAVFGL-GTVGLAVAEGAKAAGAS-RVIGIDIDPKK  231 (243)
Q Consensus       195 g~~vlV~G~-g~~G~~a~~~a~~~G~~-~vi~~~~~~~~  231 (243)
                      +.++||+|+ |.+|...+..+...|+. +|+++++++++
T Consensus        18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~   56 (242)
T 2bka_A           18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLT   56 (242)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCC
Confidence            578999987 99999999888888873 68888877654

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=86.85  E-value=1.1  Score=37.19  Aligned_cols=40  Identities=20%  Similarity=0.107  Sum_probs=33.7

Q ss_pred             CCCCCEEEEEcCC-HHHHHHHHHHHHcCCCEEEEEcCChhHH
Q 026087          192 VEPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (243)
Q Consensus       192 ~~~g~~vlV~G~g-~~G~~a~~~a~~~G~~~vi~~~~~~~~~  232 (243)
                      --.|.+++|+|.| .+|.-++.++..+|+ +|..+.+..+.+
T Consensus       156 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t~~L  196 (288)
T 1b0a_A          156 DTFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRFTKNL  196 (288)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSSCSCH
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHHCCC-eEEEEeCCchhH
Confidence            4578999999997 589999999999999 888887666544

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=86.78  E-value=1.4  Score=36.79  Aligned_cols=43  Identities=23%  Similarity=0.159  Sum_probs=34.3

Q ss_pred             CCCCCCCEEEEEcCC-HHHHHHHHHHHHcCCCEEEEEcCChhHHH
Q 026087          190 AKVEPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (243)
Q Consensus       190 ~~~~~g~~vlV~G~g-~~G~~a~~~a~~~G~~~vi~~~~~~~~~~  233 (243)
                      .---.|++++|+|.| .+|..++.++..+|+ +|..+.+....++
T Consensus       160 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~~~~T~~l~  203 (300)
T 4a26_A          160 GIEMAGKRAVVLGRSNIVGAPVAALLMKENA-TVTIVHSGTSTED  203 (300)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTSCHHH
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCCCCch
Confidence            334589999999985 589999999999999 8998876444443

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=86.62  E-value=0.6  Score=37.14  Aligned_cols=47  Identities=13%  Similarity=0.070  Sum_probs=37.4

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHHh
Q 026087          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       191 ~~~~g~~vlV~G~g~~G~~a~~~a~~~G-~~~vi~~~~~~~~~~~~~~~  238 (243)
                      ...++++||-+|+| .|..+..+++..+ ..+|++++.+++.++.+++.
T Consensus        57 ~~~~~~~VLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~  104 (239)
T 2hnk_A           57 KISGAKRIIEIGTF-TGYSSLCFASALPEDGKILCCDVSEEWTNVARKY  104 (239)
T ss_dssp             HHHTCSEEEEECCT-TCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHH
T ss_pred             HhhCcCEEEEEeCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH
Confidence            45678899999987 5888889999874 23999999999888777653

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=86.60  E-value=0.63  Score=42.91  Aligned_cols=33  Identities=27%  Similarity=0.321  Sum_probs=27.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI  227 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~  227 (243)
                      .|+++||+|+ +.+|...+..+...|+ +|+++++
T Consensus        18 ~gk~~lVTGas~GIG~aiA~~La~~Ga-~Vv~~~r   51 (613)
T 3oml_A           18 DGRVAVVTGAGAGLGREYALLFAERGA-KVVVNDL   51 (613)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEC--
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            5688999987 8999999999889999 8998876

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=86.59  E-value=1.3  Score=35.70  Aligned_cols=43  Identities=30%  Similarity=0.610  Sum_probs=35.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      ++++++||-+|+|. |.+++.+++ .|. +|++++.++..++.+++
T Consensus       118 ~~~~~~VLDiGcG~-G~l~~~la~-~g~-~v~gvDi~~~~v~~a~~  160 (254)
T 2nxc_A          118 LRPGDKVLDLGTGS-GVLAIAAEK-LGG-KALGVDIDPMVLPQAEA  160 (254)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCGGGHHHHHH
T ss_pred             cCCCCEEEEecCCC-cHHHHHHHH-hCC-eEEEEECCHHHHHHHHH
Confidence            57889999999876 777777666 588 99999999988877765

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=86.59  E-value=1.2  Score=39.90  Aligned_cols=36  Identities=28%  Similarity=0.314  Sum_probs=30.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .....|+|+|+|..|+.++..+...|. +|+.++..+
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~G~-~V~liEk~~  125 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALLGA-RVVLVEKRI  125 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCS
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHCCC-eEEEEEecc
Confidence            445689999999999999988888999 899998654

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=86.52  E-value=1.1  Score=39.18  Aligned_cols=41  Identities=24%  Similarity=0.284  Sum_probs=31.2

Q ss_pred             cCCC-CCCCEEEEEcC-CHHHHHHHHHHHH-cCCCEEEEEcCChh
Q 026087          189 TAKV-EPGSIVAVFGL-GTVGLAVAEGAKA-AGASRVIGIDIDPK  230 (243)
Q Consensus       189 ~~~~-~~g~~vlV~G~-g~~G~~a~~~a~~-~G~~~vi~~~~~~~  230 (243)
                      ...+ ..++++||+|+ +++|.+.+..+.. .|+ +|+.++++.+
T Consensus        40 ~~~~~~~gKvaLVTGas~GIG~AiA~~LA~g~GA-~Vv~~~~~~~   83 (405)
T 3zu3_A           40 EGPIANGPKRVLVIGASTGYGLAARITAAFGCGA-DTLGVFFERP   83 (405)
T ss_dssp             HCCCTTCCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCC
T ss_pred             cCCcCCCCCEEEEeCcchHHHHHHHHHHHHhcCC-EEEEEeCCch
Confidence            3444 55678899987 8999988877777 999 8888876543

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=86.47  E-value=1.4  Score=36.62  Aligned_cols=40  Identities=20%  Similarity=0.091  Sum_probs=32.8

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHH
Q 026087          192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (243)
Q Consensus       192 ~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~  232 (243)
                      --.|++++|+|. +.+|..++.++..+|+ +|..+.+..+.+
T Consensus       158 ~l~Gk~vvVvGrs~iVG~plA~lL~~~gA-tVtv~hs~T~~L  198 (286)
T 4a5o_A          158 DLYGMDAVVVGASNIVGRPMALELLLGGC-TVTVTHRFTRDL  198 (286)
T ss_dssp             CCTTCEEEEECTTSTTHHHHHHHHHHTTC-EEEEECTTCSCH
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCCcCH
Confidence            458999999998 5699999999999999 888887644433

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=86.45  E-value=0.94  Score=38.06  Aligned_cols=43  Identities=23%  Similarity=0.354  Sum_probs=35.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC----CCEEEEEcCChh--HHHHHHHhcc
Q 026087          197 IVAVFGLGTVGLAVAEGAKAAG----ASRVIGIDIDPK--KFDRVLNALA  240 (243)
Q Consensus       197 ~vlV~G~g~~G~~a~~~a~~~G----~~~vi~~~~~~~--~~~~~~~~Ga  240 (243)
                      +|.|+|+|.+|...+..+...|    . +|++++++++  +.+.+.+.|+
T Consensus        24 kI~iIG~G~mG~ala~~L~~~G~~~~~-~V~v~~r~~~~~~~~~l~~~G~   72 (322)
T 2izz_A           24 SVGFIGAGQLAFALAKGFTAAGVLAAH-KIMASSPDMDLATVSALRKMGV   72 (322)
T ss_dssp             CEEEESCSHHHHHHHHHHHHTTSSCGG-GEEEECSCTTSHHHHHHHHHTC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCCcc-eEEEECCCccHHHHHHHHHcCC
Confidence            5999999999998888777788    5 7999998875  7777777665

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=86.43  E-value=1.2  Score=34.85  Aligned_cols=47  Identities=15%  Similarity=0.259  Sum_probs=38.2

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       190 ~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      ..++++++||=+|+|..|..++.+++..+. +|++++.+++.++.+++
T Consensus        51 ~~~~~~~~vLDlG~G~~G~~~~~la~~~~~-~v~~vD~s~~~~~~a~~   97 (230)
T 3evz_A           51 TFLRGGEVALEIGTGHTAMMALMAEKFFNC-KVTATEVDEEFFEYARR   97 (230)
T ss_dssp             TTCCSSCEEEEECCTTTCHHHHHHHHHHCC-EEEEEECCHHHHHHHHH
T ss_pred             hhcCCCCEEEEcCCCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHHHH
Confidence            346789999999988678888888887666 99999999998877754

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=86.23  E-value=1.5  Score=41.75  Aligned_cols=37  Identities=22%  Similarity=0.274  Sum_probs=31.6

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHH-HcCCCEEEEEcCC
Q 026087          192 VEPGSIVAVFGL-GTVGLAVAEGAK-AAGASRVIGIDID  228 (243)
Q Consensus       192 ~~~g~~vlV~G~-g~~G~~a~~~a~-~~G~~~vi~~~~~  228 (243)
                      +.++.++||.|+ |++|...+..+. ..|+++|+.++++
T Consensus       527 ~~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~  565 (795)
T 3slk_A          527 WDAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRR  565 (795)
T ss_dssp             CCTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESS
T ss_pred             cccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccC
Confidence            567899999987 999999888776 7999778888887

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=86.22  E-value=1  Score=38.37  Aligned_cols=35  Identities=26%  Similarity=0.208  Sum_probs=30.4

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcC-CCEEEEEcCChh
Q 026087          195 GSIVAVFGL-GTVGLAVAEGAKAAG-ASRVIGIDIDPK  230 (243)
Q Consensus       195 g~~vlV~G~-g~~G~~a~~~a~~~G-~~~vi~~~~~~~  230 (243)
                      +.+|||+|+ |.+|...+..+...| . +|++++++.+
T Consensus        32 ~~~ilVtGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~   68 (377)
T 2q1s_A           32 NTNVMVVGGAGFVGSNLVKRLLELGVN-QVHVVDNLLS   68 (377)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCS-EEEEECCCTT
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCCc-eEEEEECCCC
Confidence            468999997 999999999998899 8 8999987654

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=86.16  E-value=0.95  Score=37.90  Aligned_cols=35  Identities=20%  Similarity=0.148  Sum_probs=29.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .+.+|||+|+ |.+|...+..+...|. +|++++++.
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   61 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLMMDGH-EVTVVDNFF   61 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCS
T ss_pred             CCCEEEEEcCccHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            4578999998 9999999998888999 899998753

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=86.16  E-value=1.2  Score=37.31  Aligned_cols=43  Identities=21%  Similarity=0.282  Sum_probs=35.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCCh-------hHHHHHHHhc
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDP-------KKFDRVLNAL  239 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G-~~~vi~~~~~~-------~~~~~~~~~G  239 (243)
                      .+|.|+|.|.+|...+..+...| . +|+++++++       ++.+.+.+.|
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~-~V~~~dr~~~~~~~~~~~~~~~~~~g   75 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAA-RLAAYDLRFNDPAASGALRARAAELG   75 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCS-EEEEECGGGGCTTTHHHHHHHHHHTT
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCC-eEEEEeCCCccccchHHHHHHHHHCC
Confidence            57999999999999998888889 8 899999887       4555555555

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=86.02  E-value=0.89  Score=38.67  Aligned_cols=34  Identities=24%  Similarity=0.260  Sum_probs=29.7

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       196 ~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      .+|||+|+ |.+|...+..+...|. +|++++++.+
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~-~V~~~~r~~~   63 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY-EVHGLIRRSS   63 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCS
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC-EEEEEecCCc
Confidence            57999998 9999999998888998 8999987654

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=85.96  E-value=0.77  Score=40.14  Aligned_cols=33  Identities=18%  Similarity=0.181  Sum_probs=29.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      ..|+|+|+|..|+.++..+...|. +|++++..+
T Consensus        23 ~~ViIVGaGpaGl~~A~~La~~G~-~V~viE~~~   55 (430)
T 3ihm_A           23 KRIGIVGAGTAGLHLGLFLRQHDV-DVTVYTDRK   55 (430)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTC-EEEEEESCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCC-eEEEEcCCC
Confidence            579999999999999999999999 899998654

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=85.84  E-value=1.5  Score=35.77  Aligned_cols=51  Identities=14%  Similarity=0.220  Sum_probs=37.7

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHc--CCCEEEEEcCChhHHHHHHHh
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~--G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      +.....++++++||-+|+| .|..+..+++..  +. +|++++.+++.++.+++.
T Consensus       102 ~~~~~~~~~~~~VLD~G~G-~G~~~~~la~~~~~~~-~v~~vD~s~~~~~~a~~~  154 (275)
T 1yb2_A          102 IIMRCGLRPGMDILEVGVG-SGNMSSYILYALNGKG-TLTVVERDEDNLKKAMDN  154 (275)
T ss_dssp             ----CCCCTTCEEEEECCT-TSHHHHHHHHHHTTSS-EEEEECSCHHHHHHHHHH
T ss_pred             HHHHcCCCCcCEEEEecCC-CCHHHHHHHHHcCCCC-EEEEEECCHHHHHHHHHH
Confidence            3455678899999999886 466777888763  45 999999999988877653

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=85.78  E-value=1.5  Score=33.67  Aligned_cols=47  Identities=15%  Similarity=0.005  Sum_probs=37.5

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhc
Q 026087          190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNAL  239 (243)
Q Consensus       190 ~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~G  239 (243)
                      ...+++.+||-+|+|. |..+..+++. |. ++++++.+++.++.+++.|
T Consensus        42 ~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~~D~s~~~~~~a~~~~   88 (218)
T 3ou2_A           42 RAGNIRGDVLELASGT-GYWTRHLSGL-AD-RVTALDGSAEMIAEAGRHG   88 (218)
T ss_dssp             TTTTSCSEEEEESCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHGGGC
T ss_pred             hcCCCCCeEEEECCCC-CHHHHHHHhc-CC-eEEEEeCCHHHHHHHHhcC
Confidence            3477888999998865 6666677776 77 9999999999888887754

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=85.77  E-value=0.73  Score=39.19  Aligned_cols=37  Identities=38%  Similarity=0.510  Sum_probs=32.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~  231 (243)
                      .|.+|.|+|.|.+|...++.++..|. +|++.+++.++
T Consensus       163 ~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~dr~~~~  199 (333)
T 3ba1_A          163 SGKRVGIIGLGRIGLAVAERAEAFDC-PISYFSRSKKP  199 (333)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTC-CEEEECSSCCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCchh
Confidence            56789999999999999999999999 89999877653

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=85.71  E-value=0.67  Score=40.14  Aligned_cols=37  Identities=30%  Similarity=0.391  Sum_probs=26.9

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       191 ~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      ...+|++||-+|+|. |++++. |...|+++|++++.++
T Consensus        80 ~~~~~k~VLDvG~Gt-GiLs~~-Aa~aGA~~V~ave~s~  116 (376)
T 4hc4_A           80 AALRGKTVLDVGAGT-GILSIF-CAQAGARRVYAVEASA  116 (376)
T ss_dssp             HHHTTCEEEEETCTT-SHHHHH-HHHTTCSEEEEEECST
T ss_pred             HhcCCCEEEEeCCCc-cHHHHH-HHHhCCCEEEEEeChH
Confidence            345789999998854 555543 4456888999999875

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=85.70  E-value=0.63  Score=37.94  Aligned_cols=37  Identities=19%  Similarity=0.308  Sum_probs=29.2

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       191 ~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      +..+..+|||+|+ |.+|...+..+...|. +|++++++
T Consensus         8 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   45 (292)
T 1vl0_A            8 HHHHHMKILITGANGQLGREIQKQLKGKNV-EVIPTDVQ   45 (292)
T ss_dssp             ----CEEEEEESTTSHHHHHHHHHHTTSSE-EEEEECTT
T ss_pred             cccccceEEEECCCChHHHHHHHHHHhCCC-eEEeccCc
Confidence            3456688999987 9999999999888998 89998764

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=85.64  E-value=1.1  Score=37.91  Aligned_cols=36  Identities=25%  Similarity=0.270  Sum_probs=30.8

Q ss_pred             CCCCCEEEEEcCC-HHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          192 VEPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       192 ~~~g~~vlV~G~g-~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      --.|.+++|+|+| .+|..++.++..+|+ +|++++++
T Consensus       174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gA-tVtv~nR~  210 (320)
T 1edz_A          174 RLYGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVN  210 (320)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSS
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHCCC-EEEEEeCc
Confidence            3478999999997 579999999999999 88888665

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=85.62  E-value=1.3  Score=39.19  Aligned_cols=35  Identities=34%  Similarity=0.532  Sum_probs=30.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      +++++||+|+ |.+|...+..+...|+ +|+.+++++
T Consensus       212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga-~Vvl~~r~~  247 (454)
T 3u0b_A          212 DGKVAVVTGAARGIGATIAEVFARDGA-TVVAIDVDG  247 (454)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECGG
T ss_pred             CCCEEEEeCCchHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            5789999987 9999998888888899 899888754

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=85.61  E-value=2.3  Score=35.74  Aligned_cols=44  Identities=18%  Similarity=0.247  Sum_probs=35.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHH-cCCCEEEEEcCChhHHHHHH
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~-~G~~~vi~~~~~~~~~~~~~  236 (243)
                      +...+++|+|+|.+|...+..+.. .+.++|.+++++.++.+.+.
T Consensus       123 ~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la  167 (322)
T 1omo_A          123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFV  167 (322)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHH
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHH
Confidence            567899999999999987776655 56779999999988876554

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=85.57  E-value=0.97  Score=40.55  Aligned_cols=36  Identities=31%  Similarity=0.352  Sum_probs=31.9

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (243)
Q Consensus       195 g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~  231 (243)
                      +.+|||+|+ |.+|...+..+...|. +|+++++++.+
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~-~V~~l~R~~~~  183 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGH-EVIQLVRKEPK  183 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCC
Confidence            679999997 9999999999999999 89999887654

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=85.53  E-value=0.7  Score=39.80  Aligned_cols=38  Identities=21%  Similarity=0.265  Sum_probs=33.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      +.|.-+++|+|+|.++...+++++.+|+ +|+++|..++
T Consensus       196 ~~p~~~L~I~GaGhva~aLa~la~~lgf-~V~v~D~R~~  233 (362)
T 3on5_A          196 YSPKERLIIFGAGPDVPPLVTFASNVGF-YTVVTDWRPN  233 (362)
T ss_dssp             ECCCEEEEEECCSTTHHHHHHHHHHHTE-EEEEEESCGG
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEECCCcc
Confidence            4466789999999999999999999999 8999987765

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=85.49  E-value=1.1  Score=39.83  Aligned_cols=31  Identities=19%  Similarity=0.245  Sum_probs=28.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEE
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI  225 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~  225 (243)
                      +|.+|+|.|.|.+|..+++++..+|+ +|+++
T Consensus       251 ~g~~vaVqG~GnVG~~~a~~L~~~Ga-kvVav  281 (470)
T 2bma_A          251 EKQTAVVSGSGNVALYCVQKLLHLNV-KVLTL  281 (470)
T ss_dssp             GGCEEEEECSSHHHHHHHHHHHHTTC-EECEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEE
Confidence            67899999999999999999999999 88854

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=85.48  E-value=0.95  Score=35.11  Aligned_cols=47  Identities=21%  Similarity=0.295  Sum_probs=35.4

Q ss_pred             cCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087          189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       189 ~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      ...+.++.+||-+|+|. |..+..+++. |+ +|+++|.+++-++.+++.
T Consensus        17 ~l~~~~~~~vLD~GCG~-G~~~~~la~~-g~-~V~gvD~S~~~l~~a~~~   63 (203)
T 1pjz_A           17 SLNVVPGARVLVPLCGK-SQDMSWLSGQ-GY-HVVGAELSEAAVERYFTE   63 (203)
T ss_dssp             HHCCCTTCEEEETTTCC-SHHHHHHHHH-CC-EEEEEEECHHHHHHHHHH
T ss_pred             hcccCCCCEEEEeCCCC-cHhHHHHHHC-CC-eEEEEeCCHHHHHHHHHH
Confidence            34567889999998753 4445566665 88 999999999988877653

>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*

Probab=85.48  E-value=2.3  Score=36.08  Aligned_cols=54  Identities=15%  Similarity=0.164  Sum_probs=41.5

Q ss_pred             cCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHHhcccC
Q 026087          189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRVLNALAMS  242 (243)
Q Consensus       189 ~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~--~~~~~~~~~~~~Ga~~  242 (243)
                      ....++|++|+..++|..|.+.+..++.+|.+-++.+.  .+..|++.++.+||+.
T Consensus        72 ~g~~~~g~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V  127 (343)
T 2pqm_A           72 DGRLKPGMEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAEL  127 (343)
T ss_dssp             HTSSCTTCEEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEE
T ss_pred             cCCCCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEE
Confidence            34456777777778899999999999999995555553  3457889999999863

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=85.37  E-value=1.4  Score=39.87  Aligned_cols=45  Identities=33%  Similarity=0.350  Sum_probs=37.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      .|.+|.|+|.|.+|...+..++..|. +|++++++..+ +.+.++|+
T Consensus       141 ~g~~vgIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~-~~a~~~g~  185 (529)
T 1ygy_A          141 FGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPYVSP-ARAAQLGI  185 (529)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCH-HHHHHHTC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEECCCCCh-hHHHhcCc
Confidence            57899999999999999999999999 89999877643 44555664

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=85.37  E-value=1  Score=38.37  Aligned_cols=35  Identities=23%  Similarity=0.302  Sum_probs=30.3

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       195 g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      +.+|||+|+ |.+|...+..+...|+ +|++++++++
T Consensus        29 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~   64 (379)
T 2c5a_A           29 NLKISITGAGGFIASHIARRLKHEGH-YVIASDWKKN   64 (379)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCC
T ss_pred             CCeEEEECCccHHHHHHHHHHHHCCC-eEEEEECCCc
Confidence            468999998 9999999998888898 8999987654

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=85.23  E-value=2.1  Score=37.75  Aligned_cols=33  Identities=39%  Similarity=0.603  Sum_probs=29.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID  226 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~  226 (243)
                      -+|.+|+|.|.|.+|..+++++...|+ +|+++.
T Consensus       233 l~g~~vaVqGfGnVG~~~a~~L~e~Ga-kvVavs  265 (440)
T 3aog_A          233 VEGARVAIQGFGNVGNAAARAFHDHGA-RVVAVQ  265 (440)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             ccCCEEEEeccCHHHHHHHHHHHHCCC-EEEEEE
Confidence            468999999999999999999999999 888543

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=85.18  E-value=1.3  Score=39.86  Aligned_cols=47  Identities=26%  Similarity=0.284  Sum_probs=36.8

Q ss_pred             CC-CEEEEEcCCHHHHHHHHHHHHc------CCCEEEE-EcCChhHHHHHHHhccc
Q 026087          194 PG-SIVAVFGLGTVGLAVAEGAKAA------GASRVIG-IDIDPKKFDRVLNALAM  241 (243)
Q Consensus       194 ~g-~~vlV~G~g~~G~~a~~~a~~~------G~~~vi~-~~~~~~~~~~~~~~Ga~  241 (243)
                      .| ++|.|+|.|.+|...++-++..      |. +|++ ...+++..+.+++.|+.
T Consensus        52 ~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~-~ViVg~r~~sks~e~A~e~G~~  106 (525)
T 3fr7_A           52 KGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKIGLRKGSKSFDEARAAGFT  106 (525)
T ss_dssp             TTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCC-EEEEEECTTCSCHHHHHHTTCC
T ss_pred             cCCCEEEEEeEhHHHHHHHHHHHhcccccCCCC-EEEEEeCCchhhHHHHHHCCCE
Confidence            45 7899999999999999999988      98 6654 44445567777888875

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=85.16  E-value=1.9  Score=32.56  Aligned_cols=48  Identities=21%  Similarity=0.097  Sum_probs=35.5

Q ss_pred             hhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       187 ~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      .......++++||-+|+| .|..+..+++. |. ++++++.+++.++.+++
T Consensus        25 ~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~   72 (199)
T 2xvm_A           25 LEAVKVVKPGKTLDLGCG-NGRNSLYLAAN-GY-DVDAWDKNAMSIANVER   72 (199)
T ss_dssp             HHHTTTSCSCEEEEETCT-TSHHHHHHHHT-TC-EEEEEESCHHHHHHHHH
T ss_pred             HHHhhccCCCeEEEEcCC-CCHHHHHHHHC-CC-eEEEEECCHHHHHHHHH
Confidence            344455678899999886 35566666665 77 99999999988777654

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=85.03  E-value=0.99  Score=38.20  Aligned_cols=32  Identities=19%  Similarity=0.128  Sum_probs=27.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      -.|+|+|+|..|+.++..+...|. +|++++..
T Consensus        18 ~dvvIIGgG~~Gl~~A~~La~~G~-~V~llE~~   49 (382)
T 1ryi_A           18 YEAVVIGGGIIGSAIAYYLAKENK-NTALFESG   49 (382)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCC-cEEEEeCC
Confidence            368999999999998888888999 89999864

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=84.90  E-value=0.93  Score=36.54  Aligned_cols=36  Identities=28%  Similarity=0.358  Sum_probs=29.6

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          194 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       194 ~g~~vlV~G~---g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      .++++||+|+   +.+|...+..+...|+ +|+.++++.+
T Consensus        19 ~~k~vlITGas~~~giG~~~a~~l~~~G~-~v~~~~~~~~   57 (267)
T 3gdg_A           19 KGKVVVVTGASGPKGMGIEAARGCAEMGA-AVAITYASRA   57 (267)
T ss_dssp             TTCEEEETTCCSSSSHHHHHHHHHHHTSC-EEEECBSSSS
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHHCCC-eEEEEeCCcc
Confidence            4688999975   4899999888889999 8888877654

>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*

Probab=84.85  E-value=2.6  Score=34.95  Aligned_cols=54  Identities=17%  Similarity=0.179  Sum_probs=40.7

Q ss_pred             cCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHHhcccC
Q 026087          189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRVLNALAMS  242 (243)
Q Consensus       189 ~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~--~~~~~~~~~~~~Ga~~  242 (243)
                      ....+++++|+..++|..|.+.+..++.+|.+-++.+.  .++.|.+.++.+||+.
T Consensus        55 ~g~~~~g~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v  110 (303)
T 2v03_A           55 RGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAEL  110 (303)
T ss_dssp             TTCCCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEE
T ss_pred             cCCCCCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEE
Confidence            34456777777778899999999999999994344442  3456889999999863

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=84.78  E-value=0.91  Score=38.23  Aligned_cols=35  Identities=20%  Similarity=0.387  Sum_probs=28.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcC-CCEEEEEcCChh
Q 026087          195 GSIVAVFGL-GTVGLAVAEGAKAAG-ASRVIGIDIDPK  230 (243)
Q Consensus       195 g~~vlV~G~-g~~G~~a~~~a~~~G-~~~vi~~~~~~~  230 (243)
                      +.+|||+|+ |.+|...+..+...| . +|++++++++
T Consensus        46 ~~~vlVtGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~   82 (357)
T 2x6t_A           46 GRMIIVTGGAGFIGSNIVKALNDKGIT-DILVVDNLKD   82 (357)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCC-CEEEEECCSS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCc-EEEEEecCCC
Confidence            467999998 999999999888889 7 8888887654

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=84.60  E-value=1.4  Score=38.97  Aligned_cols=32  Identities=28%  Similarity=0.445  Sum_probs=28.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEE
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI  225 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~  225 (243)
                      -+|.+|.|.|.|.+|..++.++..+|+ +|+++
T Consensus       228 l~g~~v~VqG~GnVG~~~a~~L~~~Ga-kvVav  259 (449)
T 1bgv_A          228 LVGKTVALAGFGNVAWGAAKKLAELGA-KAVTL  259 (449)
T ss_dssp             STTCEEEECCSSHHHHHHHHHHHHHTC-EEEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEE
Confidence            368999999999999999999999999 78864

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=84.55  E-value=1.6  Score=34.86  Aligned_cols=35  Identities=26%  Similarity=0.279  Sum_probs=30.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .|.+|||+|+|.+|...+..+...|+ +|++++.+.
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~~   64 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPTV   64 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            46889999999999999999999999 788886543

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=84.53  E-value=1.2  Score=37.85  Aligned_cols=34  Identities=26%  Similarity=0.292  Sum_probs=29.4

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       196 ~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      .+|||+|+ |.+|...+..+...|+ +|++++++++
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~   59 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGY-EVHGIVRRSS   59 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCS
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCcc
Confidence            57999987 9999999998888998 8999887643

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=84.49  E-value=1.8  Score=33.67  Aligned_cols=44  Identities=27%  Similarity=0.345  Sum_probs=35.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      ++++++||-+|+|. |..+..+++. |. ++++++.+++.++.+++.
T Consensus        28 ~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~   71 (235)
T 3sm3_A           28 LQEDDEILDIGCGS-GKISLELASK-GY-SVTGIDINSEAIRLAETA   71 (235)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCC-CHHHHHHHhC-CC-eEEEEECCHHHHHHHHHH
Confidence            46889999998865 6666677766 77 999999999988888763

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=84.48  E-value=1.4  Score=38.72  Aligned_cols=35  Identities=26%  Similarity=0.397  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .|+++.|+|.|.+|...+..++.+|+ +|++.++++
T Consensus       155 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~yd~~~  189 (416)
T 3k5p_A          155 RGKTLGIVGYGNIGSQVGNLAESLGM-TVRYYDTSD  189 (416)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECTTC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCcc
Confidence            57899999999999999999999999 999998654

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=84.44  E-value=0.95  Score=39.58  Aligned_cols=34  Identities=32%  Similarity=0.424  Sum_probs=29.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      -.|+|+|+|..|++++..+...|. +|++++..+.
T Consensus        28 ~dViIIGgG~AGl~aA~~La~~G~-~V~llEk~~~   61 (417)
T 3v76_A           28 QDVVIIGAGAAGMMCAIEAGKRGR-RVLVIDHARA   61 (417)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence            358899999999999999999999 8999987654

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=84.42  E-value=0.97  Score=40.91  Aligned_cols=32  Identities=22%  Similarity=0.261  Sum_probs=28.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       197 ~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .|+|+|+|..|++++..+...|. +|++++..+
T Consensus        28 dVlIVGaGpaGl~~A~~La~~G~-~V~vlEr~~   59 (549)
T 2r0c_A           28 DVLILGGGPVGMALALDLAHRQV-GHLVVEQTD   59 (549)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            58999999999999999999999 799998654

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=84.36  E-value=1.2  Score=37.73  Aligned_cols=36  Identities=28%  Similarity=0.355  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      .|.++.|+|.|.+|...++.++.+|+ +|++.++..+
T Consensus       140 ~g~tvGIiG~G~IG~~va~~~~~fg~-~v~~~d~~~~  175 (334)
T 3kb6_A          140 NRLTLGVIGTGRIGSRVAMYGLAFGM-KVLCYDVVKR  175 (334)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             cCcEEEEECcchHHHHHHHhhcccCc-eeeecCCccc
Confidence            46899999999999999999999999 9999986543

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=84.28  E-value=2.5  Score=34.48  Aligned_cols=50  Identities=28%  Similarity=0.370  Sum_probs=38.8

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      +.....++++++||=+|+|. |..+..+++. |+ +|+++|.+++-++.+++.
T Consensus        37 il~~l~l~~g~~VLDlGcGt-G~~a~~La~~-g~-~V~gvD~S~~ml~~Ar~~   86 (261)
T 3iv6_A           37 DIFLENIVPGSTVAVIGAST-RFLIEKALER-GA-SVTVFDFSQRMCDDLAEA   86 (261)
T ss_dssp             HHHTTTCCTTCEEEEECTTC-HHHHHHHHHT-TC-EEEEEESCHHHHHHHHHH
T ss_pred             HHHhcCCCCcCEEEEEeCcc-hHHHHHHHhc-CC-EEEEEECCHHHHHHHHHH
Confidence            34556788999999998853 6667777764 77 999999999988888754

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=84.27  E-value=1.7  Score=32.58  Aligned_cols=50  Identities=14%  Similarity=0.106  Sum_probs=37.4

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      +......+++++||-+|+|. |..+..+++. +. ++++++.+++.++.+++.
T Consensus        44 l~~~~~~~~~~~vLdiG~G~-G~~~~~~~~~-~~-~v~~~D~~~~~~~~a~~~   93 (194)
T 1dus_A           44 LVENVVVDKDDDILDLGCGY-GVIGIALADE-VK-STTMADINRRAIKLAKEN   93 (194)
T ss_dssp             HHHHCCCCTTCEEEEETCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHH
T ss_pred             HHHHcccCCCCeEEEeCCCC-CHHHHHHHHc-CC-eEEEEECCHHHHHHHHHH
Confidence            34455667889999998763 6666667766 76 999999999888777653

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=84.27  E-value=2.2  Score=34.27  Aligned_cols=50  Identities=18%  Similarity=0.440  Sum_probs=38.8

Q ss_pred             hcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHHh
Q 026087          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       188 ~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~-~~vi~~~~~~~~~~~~~~~  238 (243)
                      ....++||++||=+|+|+ |..+..+|+..|- .+|++++.+++.++.+++.
T Consensus        71 ~~l~ikpG~~VldlG~G~-G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~  121 (233)
T 4df3_A           71 IELPVKEGDRILYLGIAS-GTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTV  121 (233)
T ss_dssp             SCCCCCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHH
T ss_pred             hhcCCCCCCEEEEecCcC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Confidence            456799999999998743 5666677777663 4899999999988777653

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=84.25  E-value=1.4  Score=37.67  Aligned_cols=34  Identities=29%  Similarity=0.419  Sum_probs=31.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      +.+|+|+|+|++|..++..+...|..++..+|.+
T Consensus       118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D  151 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDND  151 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCC
Confidence            5789999999999999999999999999999865

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=84.16  E-value=1.5  Score=40.30  Aligned_cols=36  Identities=25%  Similarity=0.344  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .+.+|+|+|+|++|..++..+...|.+++..+|.+.
T Consensus       325 ~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~  360 (615)
T 4gsl_A          325 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  360 (615)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            457999999999999999999999999999998654

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=84.09  E-value=1  Score=37.22  Aligned_cols=35  Identities=20%  Similarity=0.254  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .|.+|||+|+|.+|...+..+...|+ +|++++.+.
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga-~VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCC-EEEEEcCCC
Confidence            57899999999999999999999999 888887654

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=84.06  E-value=2.2  Score=37.71  Aligned_cols=48  Identities=19%  Similarity=0.202  Sum_probs=37.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh--------HHHHHHHhcc
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK--------KFDRVLNALA  240 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~--------~~~~~~~~Ga  240 (243)
                      ..+++|+|+|+|.+|.-++..+...|+++|..+.+++.        ..+.+++.|.
T Consensus       262 ~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~~~~e~~~~~~~Gv  317 (456)
T 2vdc_G          262 AAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGV  317 (456)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSSCHHHHHHHHHTTC
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCCCHHHHHHHHHCCC
Confidence            56899999999999999998888899867888866542        2445555554

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=84.03  E-value=0.94  Score=35.50  Aligned_cols=47  Identities=17%  Similarity=0.100  Sum_probs=37.2

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHH
Q 026087          190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       190 ~~~~~g~~vlV~G~g~~G~~a~~~a~~~G-~~~vi~~~~~~~~~~~~~~  237 (243)
                      ....++++||-+|+| .|..++.+++..+ ..+|++++.+++.++.+++
T Consensus        65 ~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~  112 (229)
T 2avd_A           65 ARLIQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRP  112 (229)
T ss_dssp             HHHTTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHH
T ss_pred             HHhcCCCEEEEEcCC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence            345678899999987 7888888888763 3499999999988877764

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=83.91  E-value=1.9  Score=35.14  Aligned_cols=45  Identities=18%  Similarity=0.137  Sum_probs=37.1

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       191 ~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      .++++.+||-+|+| .|..+..+++..|+ ++++++.+++-++.+++
T Consensus        79 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~  123 (297)
T 2o57_A           79 VLQRQAKGLDLGAG-YGGAARFLVRKFGV-SIDCLNIAPVQNKRNEE  123 (297)
T ss_dssp             CCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCC-CCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHH
Confidence            67899999999986 56777778887788 99999999987776654

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=83.79  E-value=2.2  Score=39.16  Aligned_cols=32  Identities=25%  Similarity=0.231  Sum_probs=28.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      ..|+|+|+|..|++++..+...|. +|+.++..
T Consensus        24 ~DVvIVGgG~AGl~aA~~Lar~G~-~V~LiEr~   55 (591)
T 3i3l_A           24 SKVAIIGGGPAGSVAGLTLHKLGH-DVTIYERS   55 (591)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHcCCC-CEEEEcCC
Confidence            579999999999998888888899 89999865

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=83.41  E-value=1.5  Score=40.24  Aligned_cols=35  Identities=26%  Similarity=0.353  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      .+.+|+|+|+|++|..++..+...|.+++..+|.+
T Consensus       326 ~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D  360 (598)
T 3vh1_A          326 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG  360 (598)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            35789999999999999999999999999999754

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=83.38  E-value=1.3  Score=39.14  Aligned_cols=35  Identities=26%  Similarity=0.331  Sum_probs=30.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      ....|+|+|+|..|+.++..++..|. +|++++.++
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~-~v~vlE~~~   66 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASE   66 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCC-eEEEEECCC
Confidence            45689999999999999999999999 899987653

>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*

Probab=83.15  E-value=2.1  Score=36.14  Aligned_cols=55  Identities=18%  Similarity=0.173  Sum_probs=40.5

Q ss_pred             hcCCCCCCCEEEEE-cCCHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHHhcccC
Q 026087          188 NTAKVEPGSIVAVF-GLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRVLNALAMS  242 (243)
Q Consensus       188 ~~~~~~~g~~vlV~-G~g~~G~~a~~~a~~~G~~~vi~~~--~~~~~~~~~~~~Ga~~  242 (243)
                      ....+++|++|+|. ++|..|.+.+..++.+|.+-++++.  .+..|++.++.+||+.
T Consensus        64 ~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V  121 (334)
T 3tbh_A           64 KEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEV  121 (334)
T ss_dssp             HTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEE
T ss_pred             HcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEE
Confidence            33446888987555 6699999999999999994444443  2356888899999863

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=83.15  E-value=1.2  Score=39.54  Aligned_cols=36  Identities=42%  Similarity=0.437  Sum_probs=30.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      ..+.+|+|+|+|+.|+.++..++..|. +|+.++..+
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~~G~-~V~v~e~~~  155 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRAKGY-EVHVYDRYD  155 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHHHTC-CEEEECSSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            346789999999999999999998999 799987654

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=83.09  E-value=1.2  Score=36.51  Aligned_cols=33  Identities=27%  Similarity=0.317  Sum_probs=27.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHc-CCCEEEEEcCCh
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDP  229 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~-G~~~vi~~~~~~  229 (243)
                      -.|+|+|+|..|+.++..+... |. +|+.++..+
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~-~V~viEk~~   73 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQSV   73 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTS-CEEEEESSS
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCC-eEEEEECCC
Confidence            3689999999999988888876 98 788887654

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=83.07  E-value=2  Score=37.73  Aligned_cols=39  Identities=21%  Similarity=0.303  Sum_probs=29.2

Q ss_pred             CCCCCCCEEEEEcC-CHHHHH--HHHHHHHcCCCEEEEEcCCh
Q 026087          190 AKVEPGSIVAVFGL-GTVGLA--VAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       190 ~~~~~g~~vlV~G~-g~~G~~--a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .....|+++||+|+ +++|.+  .+..+...|+ +|+.++++.
T Consensus        55 ~~~~~gK~aLVTGassGIG~A~aia~ala~~Ga-~Vi~~~r~~   96 (418)
T 4eue_A           55 IGFRGPKKVLIVGASSGFGLATRISVAFGGPEA-HTIGVSYET   96 (418)
T ss_dssp             CCCCCCSEEEEESCSSHHHHHHHHHHHHSSSCC-EEEEEECCC
T ss_pred             CcCCCCCEEEEECCCcHHHHHHHHHHHHHhCCC-EEEEEecCc
Confidence            44577899999987 899998  4444445599 888887653

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=83.07  E-value=2.2  Score=33.34  Aligned_cols=49  Identities=18%  Similarity=0.523  Sum_probs=36.8

Q ss_pred             hcCCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHH
Q 026087          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       188 ~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G-~~~vi~~~~~~~~~~~~~~  237 (243)
                      ....++++++||-+|+|. |..+..+++..| ..+|++++.+++.++.+++
T Consensus        67 ~~~~~~~~~~vLDlG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~  116 (227)
T 1g8a_A           67 KNFPIKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVP  116 (227)
T ss_dssp             CCCCCCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEEeccC-CHHHHHHHHHhCCCeEEEEEECCHHHHHHHHH
Confidence            344578899999999876 777788888764 2389999999976655543

>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*

Probab=83.03  E-value=3.2  Score=34.89  Aligned_cols=55  Identities=15%  Similarity=0.128  Sum_probs=40.8

Q ss_pred             hcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHHhcccC
Q 026087          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRVLNALAMS  242 (243)
Q Consensus       188 ~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~--~~~~~~~~~~~~Ga~~  242 (243)
                      ....++++++|+...+|..|.+.+..++.+|.+-++++.  .++.|++.++.+||+.
T Consensus        66 ~~g~l~~~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V  122 (325)
T 3dwg_A           66 ADGLLRPGATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQI  122 (325)
T ss_dssp             HTTCCCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEE
T ss_pred             HcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEE
Confidence            334467788877767799999999999999994344443  2456888889999863

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=82.94  E-value=1.8  Score=38.77  Aligned_cols=32  Identities=28%  Similarity=0.386  Sum_probs=29.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID  226 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~  226 (243)
                      .|.+|+|.|.|.+|..+++++..+|+ +|+++.
T Consensus       243 ~g~tVaVQG~GNVG~~aa~~L~e~Ga-kVVavs  274 (501)
T 3mw9_A          243 GDKTFVVQGFGNVGLHSMRYLHRFGA-KCITVG  274 (501)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEE
Confidence            68999999999999999999999999 888763

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=82.94  E-value=1.7  Score=37.96  Aligned_cols=35  Identities=26%  Similarity=0.394  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .|+++.|+|.|.+|...++.++.+|. +|++.+++.
T Consensus       144 ~gktlGiIGlG~IG~~vA~~l~~~G~-~V~~~d~~~  178 (404)
T 1sc6_A          144 RGKKLGIIGYGHIGTQLGILAESLGM-YVYFYDIEN  178 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEEcCCc
Confidence            67899999999999999999999999 999998754

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=82.91  E-value=0.82  Score=38.53  Aligned_cols=44  Identities=14%  Similarity=0.122  Sum_probs=35.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      ..++++|.|.|.+|...++.+...|.  |++++.++++.+ +++.|.
T Consensus       114 ~~~~viI~G~G~~g~~l~~~L~~~g~--v~vid~~~~~~~-~~~~~~  157 (336)
T 1lnq_A          114 KSRHVVICGWSESTLECLRELRGSEV--FVLAEDENVRKK-VLRSGA  157 (336)
T ss_dssp             --CEEEEESCCHHHHHHHTTGGGSCE--EEEESCGGGHHH-HHHTTC
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhCCc--EEEEeCChhhhh-HHhCCc
Confidence            35689999999999988888888886  888899999988 766554

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=82.85  E-value=1.6  Score=36.10  Aligned_cols=40  Identities=25%  Similarity=0.248  Sum_probs=32.4

Q ss_pred             CCCCCEEEEEcCC-HHHHHHHHHHHHc--CCCEEEEEcCChhHH
Q 026087          192 VEPGSIVAVFGLG-TVGLAVAEGAKAA--GASRVIGIDIDPKKF  232 (243)
Q Consensus       192 ~~~g~~vlV~G~g-~~G~~a~~~a~~~--G~~~vi~~~~~~~~~  232 (243)
                      --.|++++|+|.| .+|..++.++..+  |+ +|+.+.+..+.+
T Consensus       155 ~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~a-tVtv~h~~t~~L  197 (281)
T 2c2x_A          155 SIAGAHVVVIGRGVTVGRPLGLLLTRRSENA-TVTLCHTGTRDL  197 (281)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHTSTTTCC-EEEEECTTCSCH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHhcCCCCC-EEEEEECchhHH
Confidence            4588999999997 5799999999999  88 888886655443

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=82.80  E-value=1.2  Score=36.77  Aligned_cols=33  Identities=18%  Similarity=0.057  Sum_probs=28.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      ...|+|+|+|..|+.++..++..|. +|+.++..
T Consensus        22 ~~~vvIIG~G~aGl~aA~~l~~~g~-~v~vie~~   54 (338)
T 3itj_A           22 HNKVTIIGSGPAAHTAAIYLARAEI-KPILYEGM   54 (338)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CCEEECCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEecC
Confidence            3579999999999999999999999 78888873

>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*

Probab=82.72  E-value=2.7  Score=35.08  Aligned_cols=53  Identities=15%  Similarity=0.107  Sum_probs=39.8

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHHhcccC
Q 026087          190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRVLNALAMS  242 (243)
Q Consensus       190 ~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~--~~~~~~~~~~~~Ga~~  242 (243)
                      ..++++++|+..++|..|.+.+..++.+|.+-++.+.  .++.|++.++.+||+.
T Consensus        57 g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v  111 (316)
T 1y7l_A           57 GTLTKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNL  111 (316)
T ss_dssp             TSSCTTCEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEE
T ss_pred             CCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEE
Confidence            3346666666656799999999999999995555553  3467889999999863

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=82.65  E-value=1.6  Score=38.99  Aligned_cols=48  Identities=21%  Similarity=0.323  Sum_probs=37.0

Q ss_pred             CCCCEEEEEcCCHHHHH-HHHHHHHcCCCEEEEEcCChh-HHHHHHHhccc
Q 026087          193 EPGSIVAVFGLGTVGLA-VAEGAKAAGASRVIGIDIDPK-KFDRVLNALAM  241 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~-a~~~a~~~G~~~vi~~~~~~~-~~~~~~~~Ga~  241 (243)
                      ...++|+|+|.|..|.. ++.+++.+|+ +|.+.|..+. ..+.+++.|+.
T Consensus        20 ~~~~~v~viGiG~sG~s~~A~~l~~~G~-~V~~~D~~~~~~~~~l~~~gi~   69 (494)
T 4hv4_A           20 RRVRHIHFVGIGGAGMGGIAEVLANEGY-QISGSDLAPNSVTQHLTALGAQ   69 (494)
T ss_dssp             --CCEEEEETTTSTTHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHTTCE
T ss_pred             ccCCEEEEEEEcHhhHHHHHHHHHhCCC-eEEEEECCCCHHHHHHHHCCCE
Confidence            34578999999999986 6899999999 9999987654 44667777754

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=82.62  E-value=2  Score=37.75  Aligned_cols=33  Identities=24%  Similarity=0.447  Sum_probs=30.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHH-cCCCEEEEEc
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGID  226 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~-~G~~~vi~~~  226 (243)
                      -.|++|.|+|.|.+|..++++++. +|+ +|++++
T Consensus       210 l~gktvgI~G~G~VG~~vA~~l~~~~G~-kVv~~s  243 (419)
T 1gtm_A          210 LKGKTIAIQGYGNAGYYLAKIMSEDFGM-KVVAVS  243 (419)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             cCCCEEEEEcCCHHHHHHHHHHHHhcCC-EEEEEe
Confidence            468999999999999999999999 999 898884

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=82.53  E-value=4.2  Score=36.11  Aligned_cols=36  Identities=28%  Similarity=0.271  Sum_probs=32.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~  231 (243)
                      =.+|.|+|+|.+|...++.+...|. +|+.+++++++
T Consensus        54 i~kVaVIGaG~MG~~IA~~la~aG~-~V~l~D~~~e~   89 (460)
T 3k6j_A           54 VNSVAIIGGGTMGKAMAICFGLAGI-ETFLVVRNEQR   89 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECcHHH
Confidence            3689999999999998888888999 99999999884

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=82.46  E-value=1.8  Score=37.34  Aligned_cols=35  Identities=23%  Similarity=0.387  Sum_probs=30.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      .....|+|+|+|..|+.++..++..|. +|++++.+
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~-~V~VlE~~   76 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGH-DVTILEAN   76 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSC-EEEEECSC
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCC-cEEEEecc
Confidence            345689999999999999999999998 89999876

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=82.43  E-value=2.5  Score=38.10  Aligned_cols=47  Identities=21%  Similarity=0.204  Sum_probs=36.8

Q ss_pred             CCCEEEEEcCCHHHHH-HHHHHHHcCCCEEEEEcCCh--hHHHHHHHhccc
Q 026087          194 PGSIVAVFGLGTVGLA-VAEGAKAAGASRVIGIDIDP--KKFDRVLNALAM  241 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~-a~~~a~~~G~~~vi~~~~~~--~~~~~~~~~Ga~  241 (243)
                      ++.+|.++|.|.+|.. ++.+++.+|+ +|.+.|..+  ...+.+++.|+.
T Consensus        18 ~~~~i~~iGiGg~Gms~lA~~l~~~G~-~V~~sD~~~~~~~~~~L~~~gi~   67 (524)
T 3hn7_A           18 QGMHIHILGICGTFMGSLALLARALGH-TVTGSDANIYPPMSTQLEQAGVT   67 (524)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCCTTHHHHHHHTTCE
T ss_pred             cCCEEEEEEecHhhHHHHHHHHHhCCC-EEEEECCCCCcHHHHHHHHCCCE
Confidence            4578999999999986 5888999999 999999764  345677777754

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=82.42  E-value=1  Score=37.53  Aligned_cols=35  Identities=26%  Similarity=0.403  Sum_probs=29.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcC-------CCEEEEEcCCh
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAG-------ASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G-------~~~vi~~~~~~  229 (243)
                      .+.+|||+|+ |.+|...+..+...|       . +|++++++.
T Consensus        13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~-~V~~~~r~~   55 (342)
T 2hrz_A           13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVE-KFTLIDVFQ   55 (342)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEE-EEEEEESSC
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCc-eEEEEEccC
Confidence            3568999987 999999998888888       6 888887754

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=82.34  E-value=1.5  Score=33.65  Aligned_cols=45  Identities=18%  Similarity=0.216  Sum_probs=35.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      ++++++||-+|+|. |..+..+++. |..++++++.++..++.+++.
T Consensus        40 ~~~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~   84 (215)
T 2pxx_A           40 LRPEDRILVLGCGN-SALSYELFLG-GFPNVTSVDYSSVVVAAMQAC   84 (215)
T ss_dssp             CCTTCCEEEETCTT-CSHHHHHHHT-TCCCEEEEESCHHHHHHHHHH
T ss_pred             cCCCCeEEEECCCC-cHHHHHHHHc-CCCcEEEEeCCHHHHHHHHHh
Confidence            47889999999875 6667777765 544899999999988888764

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=82.34  E-value=0.99  Score=39.28  Aligned_cols=36  Identities=19%  Similarity=0.333  Sum_probs=30.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCC--EEEEEcCCh
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGAS--RVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~--~vi~~~~~~  229 (243)
                      +.-+|+|+|+ |.+|+.|+++++.+|+.  .|.+.|.++
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~  251 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKE  251 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHH
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccc
Confidence            5668899999 99999999999999985  688887655

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=82.24  E-value=1.4  Score=35.75  Aligned_cols=43  Identities=19%  Similarity=0.193  Sum_probs=33.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      .+++.+||.+|+|. |..+..+++. |+ +|+++|.++.-++.+++
T Consensus        66 ~~~~~~vLD~GCG~-G~~~~~La~~-G~-~V~gvD~S~~~i~~a~~  108 (252)
T 2gb4_A           66 GQSGLRVFFPLCGK-AIEMKWFADR-GH-TVVGVEISEIGIREFFA  108 (252)
T ss_dssp             TCCSCEEEETTCTT-CTHHHHHHHT-TC-EEEEECSCHHHHHHHHH
T ss_pred             CCCCCeEEEeCCCC-cHHHHHHHHC-CC-eEEEEECCHHHHHHHHH
Confidence            46788999998753 5555666654 88 99999999998888754

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=82.24  E-value=1.6  Score=35.61  Aligned_cols=32  Identities=19%  Similarity=0.107  Sum_probs=28.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      ..|+|+|+|..|+.++..++..|. +|+.++.+
T Consensus        16 ~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~   47 (323)
T 3f8d_A           16 FDVIIVGLGPAAYGAALYSARYML-KTLVIGET   47 (323)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             cCEEEECccHHHHHHHHHHHHCCC-cEEEEecc
Confidence            479999999999999999998999 78888764

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=82.17  E-value=1.3  Score=38.35  Aligned_cols=37  Identities=24%  Similarity=0.217  Sum_probs=32.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      --.|.+|.|+|.|.+|...++.++.+|+ +|++.++..
T Consensus       113 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~  149 (380)
T 2o4c_A          113 DLAERTYGVVGAGQVGGRLVEVLRGLGW-KVLVCDPPR  149 (380)
T ss_dssp             CGGGCEEEEECCSHHHHHHHHHHHHTTC-EEEEECHHH
T ss_pred             ccCCCEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcCCh
Confidence            3467899999999999999999999999 899987544

>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*

Probab=82.13  E-value=3  Score=35.46  Aligned_cols=55  Identities=16%  Similarity=0.138  Sum_probs=41.2

Q ss_pred             hcCCCCCCCEEEEE-cCCHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHHhcccC
Q 026087          188 NTAKVEPGSIVAVF-GLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRVLNALAMS  242 (243)
Q Consensus       188 ~~~~~~~g~~vlV~-G~g~~G~~a~~~a~~~G~~~vi~~~--~~~~~~~~~~~~Ga~~  242 (243)
                      ....+++|++.+|. .+|..|.+.+..++.+|.+-+|++.  .++.|.+.++.+||+.
T Consensus        79 ~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~V  136 (344)
T 3vc3_A           79 EKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAEL  136 (344)
T ss_dssp             HTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEE
T ss_pred             HcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEE
Confidence            44557788766665 5699999999999999994444442  3457899999999863

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=82.09  E-value=1.7  Score=38.77  Aligned_cols=42  Identities=19%  Similarity=0.292  Sum_probs=36.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      .+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.
T Consensus        16 ~~IgvIGlG~MG~~lA~~La~~G~-~V~v~~r~~~~~~~l~~~   57 (480)
T 2zyd_A           16 QQIGVVGMAVMGRNLALNIESRGY-TVSIFNRSREKTEEVIAE   57 (480)
T ss_dssp             BSEEEECCSHHHHHHHHHHHTTTC-CEEEECSSHHHHHHHHHH
T ss_pred             CeEEEEccHHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHhh
Confidence            458899999999998888888899 899999999988877653

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=81.99  E-value=1.3  Score=40.30  Aligned_cols=33  Identities=30%  Similarity=0.373  Sum_probs=28.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      -.|+|+|+|..|++++..+...|. +|++++..+
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~~G~-~V~VlEr~~   82 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRAGGV-GALVLEKLV   82 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHTTC-CEEEEBSCS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-CEEEEcCCC
Confidence            358999999999999988888999 899998654

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=81.95  E-value=2.5  Score=31.31  Aligned_cols=48  Identities=21%  Similarity=0.165  Sum_probs=35.1

Q ss_pred             hhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       187 ~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      .......++++||=+|+|. |..+..+++ .+. ++++++.+++.++.+++
T Consensus        28 ~~~~~~~~~~~vLdiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~   75 (183)
T 2yxd_A           28 IGKLNLNKDDVVVDVGCGS-GGMTVEIAK-RCK-FVYAIDYLDGAIEVTKQ   75 (183)
T ss_dssp             HHHHCCCTTCEEEEESCCC-SHHHHHHHT-TSS-EEEEEECSHHHHHHHHH
T ss_pred             HHHcCCCCCCEEEEeCCCC-CHHHHHHHh-cCC-eEEEEeCCHHHHHHHHH
Confidence            3444667889999998754 555566666 555 99999999988777654

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=81.93  E-value=1.7  Score=37.22  Aligned_cols=30  Identities=27%  Similarity=0.501  Sum_probs=27.2

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCC
Q 026087          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGAS  220 (243)
Q Consensus       191 ~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~  220 (243)
                      ...++.+|+|+|+|.+|...++.++.+|++
T Consensus         8 ~~~~~~~IlIlG~G~lg~~la~aa~~lG~~   37 (377)
T 3orq_A            8 KLKFGATIGIIGGGQLGKMMAQSAQKMGYK   37 (377)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence            356789999999999999999999999993

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=81.90  E-value=2  Score=37.77  Aligned_cols=33  Identities=36%  Similarity=0.483  Sum_probs=29.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID  226 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~  226 (243)
                      -.|.+|+|.|.|.+|..+++++..+|+ +|+++.
T Consensus       208 l~gk~vaVqG~GnVG~~aa~~L~e~Ga-kVVavs  240 (421)
T 1v9l_A          208 IEGKTVAIQGMGNVGRWTAYWLEKMGA-KVIAVS  240 (421)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEE
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEE
Confidence            467999999999999999999999999 888553

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=81.86  E-value=1.3  Score=38.41  Aligned_cols=36  Identities=22%  Similarity=0.327  Sum_probs=32.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      --.|.+|.|+|.|.+|...++.++.+|+ +|++.++.
T Consensus       116 ~l~gktvGIIGlG~IG~~vA~~l~a~G~-~V~~~d~~  151 (381)
T 3oet_A          116 SLRDRTIGIVGVGNVGSRLQTRLEALGI-RTLLCDPP  151 (381)
T ss_dssp             CGGGCEEEEECCSHHHHHHHHHHHHTTC-EEEEECHH
T ss_pred             ccCCCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCC
Confidence            3467899999999999999999999999 99999753

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=81.65  E-value=1.5  Score=38.54  Aligned_cols=32  Identities=41%  Similarity=0.471  Sum_probs=27.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       197 ~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .|+|+|+|..|++++..+...|. +|++++..+
T Consensus        28 dVvIIGgG~aGl~aA~~la~~G~-~V~llEk~~   59 (447)
T 2i0z_A           28 DVIVIGGGPSGLMAAIGAAEEGA-NVLLLDKGN   59 (447)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHHCCC-CEEEEECCC
Confidence            48889999999998888888898 899998665

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=81.65  E-value=2.5  Score=33.88  Aligned_cols=45  Identities=24%  Similarity=0.230  Sum_probs=36.5

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       191 ~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      .++++++||=+|+|. |..+..+++.-++ +|++++.+++.++.+++
T Consensus        43 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~   87 (267)
T 3kkz_A           43 NLTEKSLIADIGCGT-GGQTMVLAGHVTG-QVTGLDFLSGFIDIFNR   87 (267)
T ss_dssp             CCCTTCEEEEETCTT-CHHHHHHHTTCSS-EEEEEESCHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCC-CHHHHHHHhccCC-EEEEEeCCHHHHHHHHH
Confidence            478899999999874 7777788887555 99999999988777654

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=81.47  E-value=1.5  Score=38.84  Aligned_cols=33  Identities=27%  Similarity=0.411  Sum_probs=30.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCC--CEEEEEc
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGA--SRVIGID  226 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~--~~vi~~~  226 (243)
                      .+.+++|+|+|..|.+++..+..+|+  ++|++++
T Consensus       185 ~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd  219 (439)
T 2dvm_A          185 SEITLALFGAGAAGFATLRILTEAGVKPENVRVVE  219 (439)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence            56789999999999999999999999  7899988

>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*

Probab=81.37  E-value=3.4  Score=36.38  Aligned_cols=53  Identities=23%  Similarity=0.273  Sum_probs=40.8

Q ss_pred             cCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc---CChhHHHHHHHhcccC
Q 026087          189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID---IDPKKFDRVLNALAMS  242 (243)
Q Consensus       189 ~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~---~~~~~~~~~~~~Ga~~  242 (243)
                      ...++++++|+...+|..|.+.+.+++.+|+ +++++.   .+..|++.++.+||..
T Consensus       155 ~G~l~~g~tVV~aSsGN~G~AlA~aaa~~Gi-~~~IvmP~~~s~~k~~~l~~~GAeV  210 (435)
T 1jbq_A          155 DGTLKPGDTIIEPTSGNTGIGLALAAAVRGY-RCIIVMPEKMSSEKVDVLRALGAEI  210 (435)
T ss_dssp             HTCSCTTCEEEEECSSHHHHHHHHHHHHHTC-EEEEEECSCCCHHHHHHHHHTTCEE
T ss_pred             cCCCCCCCEEEEeCCCHHHHHHHHHHHHcCC-eEEEEeCCCCCHHHHHHHHhCCCEE
Confidence            4456778877776779999999999999999 554443   2456889999999863

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=81.33  E-value=3.6  Score=32.14  Aligned_cols=52  Identities=25%  Similarity=0.265  Sum_probs=38.2

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhc
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNAL  239 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~G  239 (243)
                      +.......++.+||-+|+|. |..+..+++. |..++++++.+++.++.+++..
T Consensus        35 l~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~   86 (243)
T 3bkw_A           35 LRAMLPEVGGLRIVDLGCGF-GWFCRWAHEH-GASYVLGLDLSEKMLARARAAG   86 (243)
T ss_dssp             HHHHSCCCTTCEEEEETCTT-CHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTS
T ss_pred             HHHhccccCCCEEEEEcCcC-CHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhc
Confidence            44455567889999998764 5556666665 6558999999999888887653

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=81.32  E-value=1.7  Score=36.56  Aligned_cols=33  Identities=18%  Similarity=0.169  Sum_probs=28.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      ..|+|+|+|..|+.++..++..|. +|+.++..+
T Consensus        15 ~dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~   47 (360)
T 3ab1_A           15 RDLTIIGGGPTGIFAAFQCGMNNI-SCRIIESMP   47 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            469999999999999888888899 899988654

>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A

Probab=81.31  E-value=4.4  Score=33.69  Aligned_cols=54  Identities=19%  Similarity=0.158  Sum_probs=39.4

Q ss_pred             cCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHHhcccC
Q 026087          189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRVLNALAMS  242 (243)
Q Consensus       189 ~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~--~~~~~~~~~~~~Ga~~  242 (243)
                      ...++++++|+....|..|.+.+..++.+|.+-++.+.  .++.|++.++.+||+.
T Consensus        61 ~g~~~~g~~vv~assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v  116 (313)
T 2q3b_A           61 AGLIKPDTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAEL  116 (313)
T ss_dssp             TTCCCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEE
T ss_pred             cCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEE
Confidence            33456777776645699999999999999994444442  2456888999999863

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=81.27  E-value=3.7  Score=32.50  Aligned_cols=51  Identities=22%  Similarity=0.269  Sum_probs=37.8

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      +.......++.+||=+|+|. |..+..+++. |..+|+++|.+++-++.+++.
T Consensus        36 l~~~~~~~~~~~vLD~GcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~   86 (253)
T 3g5l_A           36 LKKMLPDFNQKTVLDLGCGF-GWHCIYAAEH-GAKKVLGIDLSERMLTEAKRK   86 (253)
T ss_dssp             HHTTCCCCTTCEEEEETCTT-CHHHHHHHHT-TCSEEEEEESCHHHHHHHHHH
T ss_pred             HHHhhhccCCCEEEEECCCC-CHHHHHHHHc-CCCEEEEEECCHHHHHHHHHh
Confidence            44445566889999998865 5666666665 554899999999888887764

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=81.25  E-value=6.2  Score=30.95  Aligned_cols=48  Identities=10%  Similarity=0.001  Sum_probs=36.1

Q ss_pred             hcCCCCCCCEEEEEcCCHHHHHHHHHHHHc--CCCEEEEEcCChhHHHHHHH
Q 026087          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       188 ~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~--G~~~vi~~~~~~~~~~~~~~  237 (243)
                      ...+.+++.+||=+|+| .|..++.+++.+  +. +|++++.+++.++.+++
T Consensus        50 ~~~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~   99 (221)
T 3dr5_A           50 ATTNGNGSTGAIAITPA-AGLVGLYILNGLADNT-TLTCIDPESEHQRQAKA   99 (221)
T ss_dssp             HHSCCTTCCEEEEESTT-HHHHHHHHHHHSCTTS-EEEEECSCHHHHHHHHH
T ss_pred             HhhCCCCCCCEEEEcCC-chHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHH
Confidence            34445566799988875 477778888876  45 99999999998877754

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=81.15  E-value=2.2  Score=33.75  Aligned_cols=45  Identities=18%  Similarity=0.144  Sum_probs=35.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHHH
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G-~~~vi~~~~~~~~~~~~~~  237 (243)
                      ..++++||-+|+| .|..++.+++.++ ..++++++.+++.++.+++
T Consensus        70 ~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~  115 (232)
T 3cbg_A           70 LTGAKQVLEIGVF-RGYSALAMALQLPPDGQIIACDQDPNATAIAKK  115 (232)
T ss_dssp             HHTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHH
T ss_pred             hcCCCEEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence            4567899999987 7888888888763 2399999999998877764

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=81.08  E-value=2.2  Score=38.52  Aligned_cols=34  Identities=18%  Similarity=0.127  Sum_probs=27.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHH---cCCCEEEEEcCCh
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKA---AGASRVIGIDIDP  229 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~---~G~~~vi~~~~~~  229 (243)
                      -..|+|+|+|..|++++..+..   .|. +|+.+++.+
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~-~V~liE~~~   61 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTA-DITLLQAPD   61 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSS-EEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCC-cEEEEeCCC
Confidence            3579999999999988777777   788 899998643

>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0

Probab=81.04  E-value=2.8  Score=28.68  Aligned_cols=24  Identities=38%  Similarity=0.480  Sum_probs=19.5

Q ss_pred             EEEEEEeCCCCC---------cCCCCCEEeeec
Q 026087           72 AGIVESVGEGVT---------EVQPGDHVIPCY   95 (243)
Q Consensus        72 vG~V~~~G~~~~---------~~~~Gd~V~~~~   95 (243)
                      .|+|+++|++..         .+++||+|+...
T Consensus        37 ~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vl~~k   69 (95)
T 3nx6_A           37 KGEVVAIGAGKPLDNGSLHAPVVKVGDKVIYGQ   69 (95)
T ss_dssp             EEEEEEECSCEECTTSCEECCSCCTTCEEEECT
T ss_pred             ccEEEEECCCeECCCCCEEccccCCCCEEEECC
Confidence            699999999743         489999998543

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=81.02  E-value=1.7  Score=35.68  Aligned_cols=36  Identities=11%  Similarity=-0.012  Sum_probs=31.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .++++|+|+|+|.+|+-.+..++.+|. +|..+.+.+
T Consensus       143 ~~~k~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~~  178 (312)
T 4gcm_A          143 FKNKRLFVIGGGDSAVEEGTFLTKFAD-KVTIVHRRD  178 (312)
T ss_dssp             GTTCEEEEECCSHHHHHHHHHHTTTCS-EEEEECSSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEeccc
Confidence            457899999999999998899999998 888887654

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=81.02  E-value=2.4  Score=33.12  Aligned_cols=34  Identities=26%  Similarity=0.434  Sum_probs=28.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      ..+|.|+|+|.+|...+..+...|. +|+.+++++
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~-~V~~~~~~~   52 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGH-EVTYYGSKD   52 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC-EEEEECTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence            4679999999999998888888898 888887764

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=80.95  E-value=1.2  Score=38.98  Aligned_cols=38  Identities=32%  Similarity=0.407  Sum_probs=28.9

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       191 ~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .......|+|+|+|..|+.++..++..|. +|.+++.++
T Consensus        12 ~~~~~~~v~iiG~G~~Gl~aa~~l~~~g~-~v~v~E~~~   49 (478)
T 2ivd_A           12 PRTTGMNVAVVGGGISGLAVAHHLRSRGT-DAVLLESSA   49 (478)
T ss_dssp             -----CCEEEECCBHHHHHHHHHHHTTTC-CEEEECSSS
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEEcCC
Confidence            34455679999999999999999998999 788887654

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=80.91  E-value=3.5  Score=36.27  Aligned_cols=52  Identities=15%  Similarity=0.188  Sum_probs=39.6

Q ss_pred             hhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          184 GAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       184 ~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      ..++....++++++||=+|+|. |..++++++..|+.+|++++.+++-+++++
T Consensus       163 ~~il~~l~l~~gd~VLDLGCGt-G~l~l~lA~~~g~~kVvGIDiS~~~lelAr  214 (438)
T 3uwp_A          163 AQMIDEIKMTDDDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAE  214 (438)
T ss_dssp             HHHHHHHCCCTTCEEEEESCTT-SHHHHHHHHHCCCSEEEEEECCHHHHHHHH
T ss_pred             HHHHHhcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence            3456677889999988888753 666778888889867999999986555544

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=80.88  E-value=2.1  Score=35.02  Aligned_cols=38  Identities=18%  Similarity=0.211  Sum_probs=32.4

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       191 ~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      ...++++++|+|+|.+|+-.++.+..+|. +|..+.+.+
T Consensus       148 ~~~~~~~vvViGgG~ig~e~A~~l~~~G~-~Vt~v~~~~  185 (314)
T 4a5l_A          148 PIFRNKVLMVVGGGDAAMEEALHLTKYGS-KVIILHRRD  185 (314)
T ss_dssp             GGGTTSEEEEECSSHHHHHHHHHHTTTSS-EEEEECSSS
T ss_pred             hhcCCCeEEEECCChHHHHHHHHHHHhCC-eeeeecccc
Confidence            34568899999999999999999999999 888887544

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=80.70  E-value=1.9  Score=35.47  Aligned_cols=32  Identities=28%  Similarity=0.303  Sum_probs=27.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      ..|+|+|+|..|+.++..++..|. +|+.++..
T Consensus        17 ~dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~   48 (319)
T 3cty_A           17 FDVVIVGAGAAGFSAAVYAARSGF-SVAILDKA   48 (319)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCC-cEEEEeCC
Confidence            469999999999999999998999 78888753

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=80.49  E-value=3.6  Score=32.30  Aligned_cols=42  Identities=19%  Similarity=0.421  Sum_probs=32.8

Q ss_pred             cCCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCChhH
Q 026087          189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKK  231 (243)
Q Consensus       189 ~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G-~~~vi~~~~~~~~  231 (243)
                      ...++++++||=+|+|. |..+..+++..| ..+|++++.+++-
T Consensus        72 ~~~~~~~~~vLDlG~G~-G~~~~~la~~~g~~~~v~gvD~s~~~  114 (233)
T 2ipx_A           72 QIHIKPGAKVLYLGAAS-GTTVSHVSDIVGPDGLVYAVEFSHRS  114 (233)
T ss_dssp             CCCCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEECCCHHH
T ss_pred             eecCCCCCEEEEEcccC-CHHHHHHHHHhCCCcEEEEEECCHHH
Confidence            45678899999999876 777788888764 2389999999753

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=80.48  E-value=1.7  Score=38.11  Aligned_cols=34  Identities=26%  Similarity=0.400  Sum_probs=29.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEE-EEcCC
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVI-GIDID  228 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi-~~~~~  228 (243)
                      +|.+|+|.|.|.+|..+++++...|+ +|+ +.|++
T Consensus       211 ~g~~vaVqG~GnVG~~~a~~L~~~Ga-kvVavsD~~  245 (421)
T 2yfq_A          211 EDAKIAVQGFGNVGTFTVKNIERQGG-KVCAIAEWD  245 (421)
T ss_dssp             GGSCEEEECCSHHHHHHHHHHHHTTC-CEEECCBCC
T ss_pred             cCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEEecC
Confidence            57899999999999999999999999 777 44554

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=80.42  E-value=1.6  Score=39.57  Aligned_cols=33  Identities=39%  Similarity=0.557  Sum_probs=28.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      -.|+|+|+|..|+.++..+...|. +|++++..+
T Consensus       127 ~DVvVVGaG~aGl~aA~~la~~G~-~V~vlEk~~  159 (571)
T 1y0p_A          127 VDVVVVGSGGAGFSAAISATDSGA-KVILIEKEP  159 (571)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            358899999999999999999999 899987654

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=80.37  E-value=3.4  Score=35.46  Aligned_cols=49  Identities=27%  Similarity=0.361  Sum_probs=34.0

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      +.......++++||-+|+|. |.++..+++. |+.+|++++.+ +-++.+++
T Consensus        55 i~~~~~~~~~~~VLDlGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~a~~  103 (376)
T 3r0q_C           55 VFQNKHHFEGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMADHARA  103 (376)
T ss_dssp             HHTTTTTTTTCEEEEESCTT-THHHHHHHHT-TCSEEEEEESS-TTHHHHHH
T ss_pred             HHhccccCCCCEEEEeccCc-CHHHHHHHhc-CCCEEEEEccH-HHHHHHHH
Confidence            33445678899999998753 4555555655 76699999998 65555543

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=80.34  E-value=1.8  Score=37.96  Aligned_cols=32  Identities=34%  Similarity=0.509  Sum_probs=28.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEE
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI  225 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~  225 (243)
                      -.|.+|+|.|.|.+|..+++++..+|+ +|+++
T Consensus       219 l~g~~vaVqG~GnVG~~aa~~l~e~Ga-kVVav  250 (424)
T 3k92_A          219 LQNARIIIQGFGNAGSFLAKFMHDAGA-KVIGI  250 (424)
T ss_dssp             GGGCEEEEECCSHHHHHHHHHHHHHTC-EEEEE
T ss_pred             cccCEEEEECCCHHHHHHHHHHHHCCC-EEEEE
Confidence            367899999999999999999999999 77654

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=80.29  E-value=1.6  Score=39.59  Aligned_cols=33  Identities=42%  Similarity=0.596  Sum_probs=28.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      -.|+|+|+|..|+.++..+...|+ +|++++..+
T Consensus       122 ~DVvVVG~G~aGl~aA~~la~~G~-~V~vlEk~~  154 (566)
T 1qo8_A          122 TQVLVVGAGSAGFNASLAAKKAGA-NVILVDKAP  154 (566)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTC-CEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            368999999999999998888999 899987654

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=80.24  E-value=4.4  Score=35.45  Aligned_cols=33  Identities=30%  Similarity=0.414  Sum_probs=28.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHH-cCCCEEEEEc
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGID  226 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~-~G~~~vi~~~  226 (243)
                      -.|.+|.|.|.|.+|..+++++.. .|+ +|+++.
T Consensus       207 l~g~~vaVqG~GnVG~~~a~~L~e~~Ga-kvVavs  240 (415)
T 2tmg_A          207 PKKATVAVQGFGNVGQFAALLISQELGS-KVVAVS  240 (415)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHhcCC-EEEEEE
Confidence            467999999999999999999998 999 788553

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=80.19  E-value=1.3  Score=35.27  Aligned_cols=46  Identities=20%  Similarity=0.220  Sum_probs=37.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhc
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNAL  239 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~G  239 (243)
                      ..+|.+||=+|.| .|..+..+++..+. ++++++.+++-++.+++..
T Consensus        58 ~~~G~rVLdiG~G-~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~  103 (236)
T 3orh_A           58 SSKGGRVLEVGFG-MAIAASKVQEAPID-EHWIIECNDGVFQRLRDWA  103 (236)
T ss_dssp             TTTCEEEEEECCT-TSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHG
T ss_pred             ccCCCeEEEECCC-ccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHH
Confidence            4688999999987 37777778877666 8999999999888887654

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=80.13  E-value=1.8  Score=36.88  Aligned_cols=32  Identities=25%  Similarity=0.184  Sum_probs=26.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHH-cC-CCEEEEEcCC
Q 026087          196 SIVAVFGLGTVGLAVAEGAKA-AG-ASRVIGIDID  228 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~-~G-~~~vi~~~~~  228 (243)
                      -.|+|+|+|..|+.++..+.. .| . +|++++..
T Consensus        22 ~dVvIIG~G~~Gl~~A~~La~~~G~~-~V~vlE~~   55 (405)
T 2gag_B           22 YDAIIVGGGGHGLATAYFLAKNHGIT-NVAVLEKG   55 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCC-CEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHhcCCC-cEEEEeCC
Confidence            468999999999998877777 89 8 89999764

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=80.04  E-value=1.7  Score=37.44  Aligned_cols=32  Identities=22%  Similarity=0.272  Sum_probs=27.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHc--CCCEEEEEcCC
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDID  228 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~--G~~~vi~~~~~  228 (243)
                      -.|+|+|+|..|+.++..+...  |. +|++++..
T Consensus        37 ~dVvIIGaGi~Gls~A~~La~~~pG~-~V~vlE~~   70 (405)
T 3c4n_A           37 FDIVVIGAGRMGAACAFYLRQLAPGR-SLLLVEEG   70 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTS-CEEEECSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCC-eEEEEeCC
Confidence            3689999999999988888778  99 79999764

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=80.01  E-value=4.2  Score=34.65  Aligned_cols=45  Identities=20%  Similarity=0.272  Sum_probs=35.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHH-HHcCCCEEEEEcCChhHHHHHHH
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGA-KAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a-~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      ....+++|+|+|.+|...+..+ ...+.++|.+++++.++.+.+.+
T Consensus       127 ~~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~  172 (350)
T 1x7d_A          127 PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIA  172 (350)
T ss_dssp             TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHH
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Confidence            4667999999999998876544 45677799999999888766653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	243
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	1e-51
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	3e-49
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	2e-45
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	2e-45
d2jhfa1	198	b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase	7e-44
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	9e-33
d1uufa1	179	b.35.1.2 (A:3-144,A:313-349) Hypothetical protein	7e-24
d1vj0a1	184	b.35.1.2 (A:2-155,A:338-367) Hypothetical protein	2e-23
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	9e-23
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	3e-22
d1d1ta2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	5e-19
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	9e-18
d1jvba1	177	b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase	2e-17
d1e3ia2	174	c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (	3e-17
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	9e-17
d1rjwa1	171	b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase	1e-15
d1p0fa2	174	c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog	3e-15
d1h2ba1	171	b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenas	7e-14
d1pl8a1	185	b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor	1e-13
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	2e-13
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	8e-12
d1jqba1	177	b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secon	2e-11
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	6e-11
d1f8fa2	174	c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {	9e-11
d1yb5a1	150	b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductas	4e-07
d1iz0a1	131	b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase	2e-06
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	9e-06
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	1e-05
d1xa0a1	152	b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homo	2e-05
d1gu7a1	175	b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA redu	4e-05
d1kola2	195	c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps	2e-04
d1mv8a2	202	c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pse	2e-04
d1dlja2	196	c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGD	6e-04
d1qora1	147	b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductas	7e-04

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score =  164 bits (416), Expect = 1e-51
 Identities = 95/200 (47%), Positives = 129/200 (64%), Gaps = 1/200 (0%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           +T G+VI CKAAVAWE NKPLVIE+++V  P A E+RIKI+ T +CHTD Y       + 
Sbjct: 1   ATVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKD 60

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
            FP +LGHE AGIVESVG GVTE QPG+ VIP + ++C EC+FC+S KTN C K   A  
Sbjct: 61  GFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGW-ANE 119

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
           +  +M+ +++RF+  G+ +  F+GTSTFSQYTVV+ ++VAKIDP   LD+       + +
Sbjct: 120 SPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLES 179

Query: 182 GLGAVWNTAKVEPGSIVAVF 201
              A+      +    V   
Sbjct: 180 VNDAIDLMKHGKCIRTVLSL 199

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score =  158 bits (399), Expect = 3e-49
 Identities = 111/196 (56%), Positives = 132/196 (67%), Gaps = 1/196 (0%)

Query: 5   GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFP 64
            +VI CKAAVAWE  KPL IE+++VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP
Sbjct: 2   NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFP 61

Query: 65  CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
            ILGH  AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G 
Sbjct: 62  VILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG- 120

Query: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 184
           +M D  SRF+  GK I H+MGTSTFS+YTVV D+SVAKIDP   +D+             
Sbjct: 121 LMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINK 180

Query: 185 AVWNTAKVEPGSIVAV 200
           A       +    V  
Sbjct: 181 AFELMHSGKSIRTVVK 196

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score =  148 bits (375), Expect = 2e-45
 Identities = 92/208 (44%), Positives = 125/208 (60%), Gaps = 12/208 (5%)

Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
           T G+ ITCKAAVAWEP+KPL +E + VAPP+A EVRIKIL + +C +D+       P   
Sbjct: 2   TAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPSK- 60

Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
           FP ILGHEA G+VES+G GVT V+PGD VIP +  +C  C+ CKS  +N C K       
Sbjct: 61  FPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAK- 119

Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG 182
             +M D  SRF+  GKPIY+ MGTSTF++YTVV D++VAKIDP+  ++ +      +   
Sbjct: 120 TGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKINVNFLVSTKLTL--- 176

Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAV 210
                   ++     +   G G   + +
Sbjct: 177 -------DQINKAFELLSSGQGVRSIMI 197

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score =  148 bits (375), Expect = 2e-45
 Identities = 89/201 (44%), Positives = 126/201 (62%), Gaps = 7/201 (3%)

Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
           T+G+VI CKAA+AW+   PL IE+++V+PP+A EVRI+++ T +C TD         + L
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATD-PKKKAL 60

Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
           FP +LGHE AGIVESVG GVT  +PGD VIP +  +C+ CK C S  TNLCGK+R     
Sbjct: 61  FPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYP 120

Query: 123 GV---MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 179
            +   +M DR SRF+  G+ IYHFMG S+FSQYTVV + ++A++D +  LD +       
Sbjct: 121 TIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLVTHALPF 180

Query: 180 PTGLGAVWNTAKVEPGSIVAV 200
            +   A+     ++ G  +  
Sbjct: 181 ESINDAI---DLMKEGKSIRT 198

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score =  144 bits (364), Expect = 7e-44
 Identities = 96/201 (47%), Positives = 120/201 (59%), Gaps = 5/201 (2%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L     GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  LPVIA-GHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID    LD    L   V  
Sbjct: 120 RGTMQ-DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAFALD---PLITHVLP 175

Query: 182 GLGAVWNTAKVEPGSIVAVFG 202
                     +  G  +    
Sbjct: 176 FEKINEGFDLLRSGESIRTIL 196

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score =  115 bits (289), Expect = 9e-33
 Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 5/194 (2%)

Query: 9   TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILG 68
              AAV         ++ +++  PQ  EV +K++ T +CHTD      K P    P +LG
Sbjct: 3   DIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVP-LPAVLG 61

Query: 69  HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
           HE +GI+E++G  VTE+Q GDHV+  Y   C +C  C +G    C +  G   +G     
Sbjct: 62  HEGSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEG 120

Query: 129 RKSRFSINGK--PIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
                  + +     HF   S+F+ Y +  + +  K+    P D++            A+
Sbjct: 121 N-HALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQLVKFYAFDEINQAAI 179

Query: 187 WNTAKVEPGSIVAV 200
            +   +    I+ +
Sbjct: 180 DSRKGITLKPIIKI 193

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 92.3 bits (228), Expect = 7e-24
 Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 16/177 (9%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KA  A+   +PL   D+    P   +V+I+I +  +CH+D +    +    ++PC+ GHE
Sbjct: 2   KAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHE 61

Query: 71  AAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
             G V +VG+ V +  PGD V + C    C+ C+ C+ G  N C  + G T         
Sbjct: 62  IVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTG-TYNSPT---- 116

Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ-APLDKVCLLGCGVPTGLGA 185
                    P         +SQ  VVH+  V +I      + +   +       L  
Sbjct: 117 ---------PDEPGHTLGGYSQQIVVHERYVLRIRVADIEMIRADQINEAYERMLRG 164

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 91.1 bits (225), Expect = 2e-23
 Identities = 42/200 (21%), Positives = 74/200 (37%), Gaps = 26/200 (13%)

Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           +   A V  + N+PLV ++ +++    G + ++IL   +C +D + + G+DP    P IL
Sbjct: 3   LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIIL 62

Query: 68  GHEAAGIVESVGEGVTEVQPGD-----HVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
           GHE AG V  V     ++          ++      C EC +CK  K       R   G 
Sbjct: 63  GHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYG- 121

Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH-DVSVAKIDPQAPLDKVCLLGCGVPT 181
              +N   S +        H  G   +S + V+  +  V K+  +        L      
Sbjct: 122 ---INRGCSEYP-------HLRG--CYSSHIVLDPETDVLKVSEKITHRLP--LKEAN-- 165

Query: 182 GLGAVWNTAKVEPGSIVAVF 201
                    +      V ++
Sbjct: 166 ---KALELMESREALKVILY 182

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 89.2 bits (220), Expect = 9e-23
 Identities = 53/196 (27%), Positives = 78/196 (39%), Gaps = 30/196 (15%)

Query: 9   TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCIL 67
           T KAAV      PL IE+V+V  P  G+V +KI  + +CHTD +   G  P +   P I 
Sbjct: 5   TMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIP 64

Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE  G V +VG GVT V+ GD V IP     C  C+ C +G   LC             
Sbjct: 65  GHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLC------------- 111

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
                      +    +     +++Y +     V  +    P +    +  G    +  +
Sbjct: 112 ---------ESQQNTGYSVNGGYAEYVLADPNYVGIL----PKNVKATIHPGKLDDINQI 158

Query: 187 WNTAK--VEPGSIVAV 200
            +  +     G IV  
Sbjct: 159 LDQMRAGQIEGRIVLE 174

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.4 bits (218), Expect = 3e-22
 Identities = 30/196 (15%), Positives = 60/196 (30%), Gaps = 20/196 (10%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPP--QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILG 68
           +             +  +  P      ++ IKI    +C +D +  +G       P ++G
Sbjct: 8   EGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVG 67

Query: 69  HEAAGIVESVGEGVTE-VQPGDH-VIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           HE  G V  +G      ++ G    +      C EC  CK+     C             
Sbjct: 68  HEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYC------------- 114

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
              K   + +      ++    ++ Y  VH+  V  I     ++ + +   GV      +
Sbjct: 115 --TKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAFERM 172

Query: 187 WNTAKVEPGSIVAVFG 202
                V     +  + 
Sbjct: 173 -EKGDVRYRFTLVGYD 187

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 79.1 bits (194), Expect = 5e-19
 Identities = 42/75 (56%), Positives = 53/75 (70%)

Query: 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
           AP +KVCL+GCG  TG GA   T KV+PGS   VFGLG VGL+V  G K+AGASR+IGID
Sbjct: 2   APPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGID 61

Query: 227 IDPKKFDRVLNALAM 241
           ++  KF++ +   A 
Sbjct: 62  LNKDKFEKAMAVGAT 76

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 76.2 bits (186), Expect = 9e-18
 Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 26/194 (13%)

Query: 12  AAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG---KDPEGLFPCILG 68
           +AV ++ N  L +E   +  P+  EV +++ +  +C +D + +      D     P ++G
Sbjct: 4   SAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIG 62

Query: 69  HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
           HEA+G V  VG+ V  ++ GD V       CR C+FCK GK NLC               
Sbjct: 63  HEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLC--------------- 107

Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
                  +             ++Y V       K+     + ++      +   + A   
Sbjct: 108 ------PDLTFCATPPDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVDAF-E 160

Query: 189 TAKVEPGSIVAVFG 202
            A+ +  + + V  
Sbjct: 161 AARKKADNTIKVMI 174

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 75.4 bits (184), Expect = 2e-17
 Identities = 38/185 (20%), Positives = 66/185 (35%), Gaps = 31/185 (16%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL-------- 62
           +A    E  KPL ++++ V  P+  +V IK+    +CH+D +   G+             
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61

Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
            P  LGHE AG +E VG+ V     GD V          C +C+ G+ +LC   R     
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPR----- 116

Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS-VAKIDPQAPLDKVCLLGCGVPT 181
                                     +++Y +V     + K+    P+    +       
Sbjct: 117 -----------------WLGINFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANE 159

Query: 182 GLGAV 186
            +  +
Sbjct: 160 AIDNL 164

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 74.6 bits (182), Expect = 3e-17
 Identities = 41/66 (62%), Positives = 49/66 (74%)

Query: 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
           A L++VCL+GCG  +G GA  NTAKV PGS  AVFGLG VGL+   G K AGASR+I ID
Sbjct: 1   ANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAID 60

Query: 227 IDPKKF 232
           I+ +KF
Sbjct: 61  INGEKF 66

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 73.8 bits (180), Expect = 9e-17
 Identities = 41/218 (18%), Positives = 73/218 (33%), Gaps = 28/218 (12%)

Query: 11  KAAVAWEPNKPLVIEDVQV-------APPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF 63
           +  V     K + ++ +                V +K++ T +C +D +   G       
Sbjct: 3   RGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRG-RTTAQV 60

Query: 64  PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAG 123
             +LGHE  G V   G  V  +Q GD V   +   C  C+ CK   T +C  V  A   G
Sbjct: 61  GLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGG 120

Query: 124 VMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPT 181
                    ++               ++Y +V   D ++ K+  +    +   +   V  
Sbjct: 121 AYGYVDMGDWTG------------GQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGV 168

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA 219
            + ++ + A    G     F  G     V +  K   A
Sbjct: 169 QVISLDD-APRGYG----EFDAGVPKKFVIDPHKTFSA 201

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 70.0 bits (170), Expect = 1e-15
 Identities = 50/196 (25%), Positives = 75/196 (38%), Gaps = 32/196 (16%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL-GH 69
           KAAV  +  +PL I++V+      GEV ++I    +CHTD +   G  P      ++ GH
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61

Query: 70  EAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
           E  GIVE VG GVT ++ GD V IP   + C  C +C SG+  LC               
Sbjct: 62  EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLC--------------- 106

Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL--LGCGVPTGLGAV 186
                    +    +     +++Y       V KI     ++   L  +       L   
Sbjct: 107 -------EHQKNAGYSVDGGYAEYCRAAADYVVKIPDNTIIEVQPLEKINEVFDRMLKGQ 159

Query: 187 WNTAKVEPGSIVAVFG 202
                   G +V    
Sbjct: 160 I------NGRVVLTLE 169

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 69.1 bits (168), Expect = 3e-15
 Identities = 40/68 (58%), Positives = 46/68 (67%), Gaps = 1/68 (1%)

Query: 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
           APL+  CL+GCG  TG GA  NTAKV PGS  AVFGLG VG +   G KAAGASR+IG+ 
Sbjct: 1   APLES-CLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVG 59

Query: 227 IDPKKFDR 234
               KF +
Sbjct: 60  THKDKFPK 67

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 65.5 bits (158), Expect = 7e-14
 Identities = 47/194 (24%), Positives = 68/194 (35%), Gaps = 28/194 (14%)

Query: 11  KAAVAWEPNKPLVIEDVQV-APPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFP---CI 66
           KAA   E NKPL IEDV         +V ++I    +CHTD +   G   E L P     
Sbjct: 1   KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYT 60

Query: 67  LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           LGHE  G +E V EGV  ++ GD VI         C  C++G+   C  +          
Sbjct: 61  LGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLE--------- 111

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
                                 F+++      SV K+     ++        +   L  +
Sbjct: 112 -------------FPGLNIDGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERL 158

Query: 187 WNTAKVEPGSIVAV 200
                   G  V +
Sbjct: 159 EKGEV--LGRAVLI 170

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (157), Expect = 1e-13
 Identities = 38/193 (19%), Positives = 62/193 (32%), Gaps = 28/193 (14%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL---FPCIL 67
            + V   P   L +E+  +  P   EV +++    +C +D + W            P +L
Sbjct: 9   LSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVL 67

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           GHEA+G VE VG  V  ++PGD V     A     +FCK G+ NL   +          N
Sbjct: 68  GHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGN 127

Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
                                  ++   +     K+                       +
Sbjct: 128 ---------------------LCRFYKHNAAFCYKLPDNVKPLVTHRFPLEKAL---EAF 163

Query: 188 NTAKVEPGSIVAV 200
            T K   G  + +
Sbjct: 164 ETFKKGLGLKIML 176

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 64.2 bits (155), Expect = 2e-13
 Identities = 40/67 (59%), Positives = 49/67 (73%)

Query: 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
           +PL+KVCL+GCG  TG G+    AKV  GS  AVFGLG VGL+V  G KAAGA+R+IG+D
Sbjct: 1   SPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVD 60

Query: 227 IDPKKFD 233
           I+  KF 
Sbjct: 61  INKDKFA 67

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 60.0 bits (144), Expect = 8e-12
 Identities = 48/67 (71%), Positives = 54/67 (80%)

Query: 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
           APLDKVCLLGCG+ TG GA  NTAK+EPGS+ AVFGLG VGLAV  G K AGASR+IG+D
Sbjct: 1   APLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVD 60

Query: 227 IDPKKFD 233
           I+  KF 
Sbjct: 61  INKDKFA 67

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 59.2 bits (142), Expect = 2e-11
 Identities = 35/203 (17%), Positives = 60/203 (29%), Gaps = 33/203 (16%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           K       NK L   + +     + +  ++ L  + C +D +T            ILGHE
Sbjct: 2   KGFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHE 60

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
           A G V  VG  V + +PGD VI             ++G                      
Sbjct: 61  AVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNG--------------- 105

Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
               +     +       F +Y  V+  D+++A +     L K+         G   +  
Sbjct: 106 ----MLAGWKFSNFKDGVFGEYFHVNDADMNLAILPKDVDLSKLVTHVY---HGFDHIEE 158

Query: 189 TAKVEPGSIVAVFGLGTVGLAVA 211
                    + +       L  A
Sbjct: 159 A--------LLLMKDKPKDLIKA 173

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 57.3 bits (137), Expect = 6e-11
 Identities = 45/67 (67%), Positives = 51/67 (76%)

Query: 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
           APLD VCLLGCGV TG GA  NTAKVEPGS  AVFGLG VGLA   G  +AGA R+I +D
Sbjct: 1   APLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVD 60

Query: 227 IDPKKFD 233
           ++P KF+
Sbjct: 61  LNPDKFE 67

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 56.8 bits (136), Expect = 9e-11
 Identities = 27/66 (40%), Positives = 37/66 (56%)

Query: 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227
           P++ +  LGCG+ TG GA  N  KV P S    +G G VGL+    AK  GAS +I +DI
Sbjct: 2   PIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI 61

Query: 228 DPKKFD 233
              + +
Sbjct: 62  VESRLE 67

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 4e-07
 Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 4/99 (4%)

Query: 11  KAAVAWEPNKPLVIE---DVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCI 66
           +A   +E   P V++   D+ V  P+  +V IK+    +   + Y  SG    + L P  
Sbjct: 4   RAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYT 63

Query: 67  LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFC 105
            G + AG++E+VG+  +  + GD V           ++ 
Sbjct: 64  PGSDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYA 102

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 131

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 44.0 bits (103), Expect = 2e-06
 Identities = 14/59 (23%), Positives = 21/59 (35%)

Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH 69
          KA V      PL + D+     + GEV +++    L   D     G     L P  +  
Sbjct: 2  KAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPG 60

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 42.6 bits (99), Expect = 9e-06
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLA 209
           PL+   ++   + TG       A +E GS V V G+G VGL 
Sbjct: 2   PLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLM 42

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.2 bits (98), Expect = 1e-05
 Identities = 10/39 (25%), Positives = 15/39 (38%)

Query: 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVG 207
           LD + +  C   T   A     +   G  V + G G +G
Sbjct: 3   LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLG 41

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 152

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 10/93 (10%), Positives = 26/93 (27%), Gaps = 3/93 (3%)

Query: 9  TCKAAVAWEPNKPLV--IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCI 66
            +A V  +        ++ + +     G+V +++ ++++ + D                
Sbjct: 3  AFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKT-YP 61

Query: 67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAEC 99
                     V       + GD VI       
Sbjct: 62 FVPGIDLAGVVVSSQHPRFREGDEVIATGYEIG 94

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 40.9 bits (94), Expect = 4e-05
 Identities = 16/104 (15%), Positives = 30/104 (28%), Gaps = 5/104 (4%)

Query: 7   VITCKAAVAWEPNKP-----LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           +IT +A +  +  +P         ++        EV +K L + +  +D     G  P  
Sbjct: 1   MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSK 60

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFC 105
                             EG+ EV      +   +A        
Sbjct: 61  PAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSH 104

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGA 214
           +  +  L   +PTG       A V PGS V V G G VGLA A  A
Sbjct: 1   IRDLTCLSDILPTGYHGAVT-AGVGPGSTVYVAGAGPVGLAAAASA 45

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 202

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           +++FGLG VG   A    A G   VIG+D+   K D 
Sbjct: 3   ISIFGLGYVGAVCAGCLSARG-HEVIGVDVSSTKIDL 38

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} Length = 196

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 37.3 bits (85), Expect = 6e-04
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           +AV G G VGL++      +  + V  +DI P K D+
Sbjct: 3   IAVAGSGYVGLSLG--VLLSLQNEVTIVDILPSKVDK 37

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 147

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 36.9 bits (84), Expect = 7e-04
 Identities = 26/84 (30%), Positives = 35/84 (41%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81
           L   +   A P   E++++     +   D Y  SG  P    P  LG EAAGIV  VG G
Sbjct: 15  LQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSG 74

Query: 82  VTEVQPGDHVIPCYQAECRECKFC 105
           V  ++ GD V+    A        
Sbjct: 75  VKHIKAGDRVVYAQSALGAYSSVH 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	243
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	100.0
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	100.0
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	100.0
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	100.0
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	100.0
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	100.0
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	100.0
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	100.0
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	100.0
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	100.0
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	100.0
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	100.0
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	100.0
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	100.0
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	100.0
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	100.0
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	99.97
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.97
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.96
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.95
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.95
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.93
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.92
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	99.92
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.67
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	99.67
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.59
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.56
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.56
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.55
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.55
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.54
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.54
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.52
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.51
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.5
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.48
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.48
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.47
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.47
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.46
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.46
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.45
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.44
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.41
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.38
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.36
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.36
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.35
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.35
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.35
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.33
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.3
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.16
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.12
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.63
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.38
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.89
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.65
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.56
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.48
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	96.23
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.2
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.14
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.08
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.04
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	95.98
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.76
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	95.75
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	95.68
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	95.31
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.25
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	94.96
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	94.72
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.69
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	94.54
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	94.54
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	94.12
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	94.1
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	94.07
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.03
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	93.93
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	93.78
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	93.78
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	93.76
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	93.5
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	93.27
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.02
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	92.91
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	92.86
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	92.84
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	92.8
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	92.75
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	92.73
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	92.72
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	92.49
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	92.38
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	92.24
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	92.22
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	92.14
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	92.12
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	91.99
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	91.75
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	91.66
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	91.56
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	91.56
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	91.46
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	91.36
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	91.33
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	91.28
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	91.19
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	91.05
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	89.97
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	89.96
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	89.92
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	89.88
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	89.87
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	89.58
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	89.45
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	89.43
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	89.35
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	89.13
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	89.12
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	89.11
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	88.77
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	88.36
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	88.23
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	88.16
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	88.03
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	88.0
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	87.65
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	87.55
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	87.55
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	87.49
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	87.45
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	87.15
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	87.05
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	86.82
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	86.18
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	86.05
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	85.88
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	85.69
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	85.65
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	85.61
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	85.39
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	85.29
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	85.23
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	85.22
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	85.16
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	85.0
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	84.92
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	84.87
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	84.83
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	84.81
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	84.29
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	84.24
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	84.21
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	83.95
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	83.87
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	83.84
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	83.74
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	83.74
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	83.56
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	83.51
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	82.92
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	82.92
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	82.62
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	82.04
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	81.57
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	81.5
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	81.46
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	81.34
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	80.76
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	80.66

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=100.00  E-value=8e-41  Score=268.86  Aligned_cols=198  Identities=48%  Similarity=0.776  Sum_probs=184.5

Q ss_pred             CCCcccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCC
Q 026087            3 TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV   82 (243)
Q Consensus         3 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~   82 (243)
                      +.+..|++||+++.+++++++++|++.|+|++|||||||+++|||++|++.+.+......+|.++|||++|+|+++|+++
T Consensus         2 ~~~~~~~~kAav~~~~~~pl~i~ev~~P~p~~~eVlIkv~a~giCgsD~~~~~g~~~~~~~p~i~GhE~~G~v~~vG~~v   81 (199)
T d1cdoa1           2 TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLGHEGAGIVESVGPGV   81 (199)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCTTSCSEECCCCEEEEEEEECTTC
T ss_pred             CCCCceEEEEEEEecCCCCcEEEEEECCCCCCCEEEEEEEEEEEecchhhhhhhcccccccccccccccceEEEEEcCCC
Confidence            45677899999999999999999999999999999999999999999999999987777899999999999999999999


Q ss_pred             CcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEE
Q 026087           83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK  162 (243)
Q Consensus        83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  162 (243)
                      ++|++||||++.+...|++|.+|.+++++.|.+.......+.. .++..++..+|..+++..+.|+|+||++++++.+++
T Consensus        82 ~~~~~GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~Ggfaey~~v~~~~~~~  160 (199)
T d1cdoa1          82 TEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVM-SPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAK  160 (199)
T ss_dssp             CSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTT-SCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEE
T ss_pred             ceecCCCEEEEeeeccccccccccCCCcccccccccccccccc-cCcccceeeccceeecccccCCceEEEEEchHHEEE
Confidence            9999999999999999999999999999999987766666655 778888888999999998899999999999999999


Q ss_pred             cCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEE
Q 026087          163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF  201 (243)
Q Consensus       163 lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~  201 (243)
                      +|+++++++++++.+++.|++.++......+.|++|||+
T Consensus       161 iP~~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~  199 (199)
T d1cdoa1         161 IDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  199 (199)
T ss_dssp             CCTTSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence            999999999999999999999999888889999999984

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=100.00  E-value=3.4e-39  Score=258.73  Aligned_cols=196  Identities=57%  Similarity=0.886  Sum_probs=175.9

Q ss_pred             CcccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCc
Q 026087            5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE   84 (243)
Q Consensus         5 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~   84 (243)
                      +++|+|||+++++++++|+++|+|.|+|+++||||||+++|||++|++++.|.+....+|.++|||++|+|+++|++++.
T Consensus         2 ~~~~~~kAav~~~~g~~l~i~evp~P~p~~~eVLVkv~a~gic~sD~~~~~G~~~~~~~p~v~GhE~~G~V~~vG~~V~~   81 (197)
T d2fzwa1           2 NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVTK   81 (197)
T ss_dssp             CCCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             CCceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEecCCCCcHHHHcCCcccccccccCCcceeeEEEeecCCcee
Confidence            46789999999999999999999999999999999999999999999999998777789999999999999999999999


Q ss_pred             CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (243)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp  164 (243)
                      +++||||++.+...|+.|.+|..++...|.+.......+.. .+...++..+|..+.++.+.|+|+||+++++..++++|
T Consensus        82 ~~~GdrV~v~~~~~cg~c~~c~~g~~~~C~~~~~~~~~~~~-~~~~~~~~~~g~~v~~~~g~GgfAey~vvp~~~~~~vp  160 (197)
T d2fzwa1          82 LKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLM-PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKID  160 (197)
T ss_dssp             CCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCC-TTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECC
T ss_pred             cCCCCEEEEccccccccccccccCccccCcccccccccccc-CCccceeccCCcceecccccccceeEEEechHHEEECC
Confidence            99999999999999999999999999999886554334443 45555666778888888888999999999999999999


Q ss_pred             CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEE
Q 026087          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF  201 (243)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~  201 (243)
                      +++++++++.+.+++.|++.++.....-+.+++|||+
T Consensus       161 ~~l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi  197 (197)
T d2fzwa1         161 PLIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  197 (197)
T ss_dssp             TTSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             CCCCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence            9999999999999999999887666666788999884

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=100.00  E-value=1.1e-37  Score=251.15  Aligned_cols=194  Identities=46%  Similarity=0.819  Sum_probs=168.6

Q ss_pred             CCcccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCC
Q 026087            4 EGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT   83 (243)
Q Consensus         4 ~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~   83 (243)
                      +..+|+|||+++.+++++++++|+|.|+|+++||||||+++|||++|++++.|.++. .+|.++|||++|+|+++|++++
T Consensus         3 ~~~~~~~KAaV~~~~g~pl~i~evp~P~p~~geVlVkv~a~gic~sD~~~~~G~~~~-~~P~v~GHE~~G~V~~vG~~V~   81 (202)
T d1e3ia1           3 QGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKA-LFPVVLGHECAGIVESVGPGVT   81 (202)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTTSCC-CSSBCCCCEEEEEEEEECTTCC
T ss_pred             CCCeEEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEeccccceeeeeccc-ccccccccccceEEeeecCCce
Confidence            456789999999999999999999999999999999999999999999999997754 6899999999999999999999


Q ss_pred             cCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCC---CceecCCCccccccCCcceeeecCCcceeeEEEecccee
Q 026087           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG---AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV  160 (243)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~---~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  160 (243)
                      +|++||||++.+...|+.|.+|..|+.+.|........   .+....++..++..+|..+++..+.|+|+||+++++..+
T Consensus        82 ~~~~GdrV~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~G~faey~~v~~~~l  161 (202)
T d1e3ia1          82 NFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANL  161 (202)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGE
T ss_pred             eccCCCEEEEEeeccccccccccCCcccccccccccccCccceecccccccccccCceeeecccccCCceEEEEEehhhE
Confidence            99999999999999999999999999999987654321   122224456667778888998999999999999999999


Q ss_pred             EEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEE
Q 026087          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF  201 (243)
Q Consensus       161 ~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~  201 (243)
                      +++|++++++.++++.+++.+++.++.   .+|+|++|.|+
T Consensus       162 ~~lP~~~~~~~~~~~~~~~~~~~~a~~---~~k~G~~V~vi  199 (202)
T d1e3ia1         162 ARVDDEFDLDLLVTHALPFESINDAID---LMKEGKSIRTI  199 (202)
T ss_dssp             EECCTTSCGGGGEEEEEEGGGHHHHHH---HHHTTCCSEEE
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCEEEEE
Confidence            999999999988888777777776552   25789998876

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=100.00  E-value=1.4e-37  Score=248.68  Aligned_cols=191  Identities=28%  Similarity=0.523  Sum_probs=158.0

Q ss_pred             ccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087            7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (243)
Q Consensus         7 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~   86 (243)
                      +++|+|+++.+++++|++++++.|+|++|||||||++++||++|++++.|.++. ++|.++|||++|+|+++|+++++|+
T Consensus         1 ~k~~~Aav~~~~g~~l~l~~v~~P~p~~geVlVkv~a~gic~sD~~~~~G~~~~-~~P~i~GHE~~G~V~~vG~~v~~~~   79 (194)
T d1f8fa1           1 LKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPV-PLPAVLGHEGSGIIEAIGPNVTELQ   79 (194)
T ss_dssp             CEEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC-CSSBCCCCEEEEEEEEECTTCCSCC
T ss_pred             CceeEEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEEecCchHhhhhhcccc-cCCcccccceEEEeeecCccceeEc
Confidence            358999999999999999999999999999999999999999999999998764 6899999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccC--CcceeeecCCcceeeEEEeccceeEEcC
Q 026087           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSIN--GKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (243)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~lp  164 (243)
                      +||||+. +..+|++|.+|.+++++.|++.......|.. .+|.+++...  +....+..+.|+|+||.+++...++++|
T Consensus        80 vGDrVv~-~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~-~dg~~~~~~~~~~~~~~~~~~~g~fae~~~v~~~~~~~ip  157 (194)
T d1f8fa1          80 VGDHVVL-SYGYCGKCTQCNTGNPAYCSEFFGRNFSGAD-SEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVT  157 (194)
T ss_dssp             TTCEEEE-CCCCCSSSHHHHTTCGGGCTTHHHHSSSSSC-SSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEEC
T ss_pred             cCceeee-ecccccCChhhhCCCcccccccccceecccc-ccceeeeecCCceeeccccccccccceeEEEehHHEEECC
Confidence            9999955 4558999999999999999975443334433 3443333222  3334456667899999999999999999


Q ss_pred             CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEE
Q 026087          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI  225 (243)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~  225 (243)
                      ++++++++                         +++.|+|.+|++++|+++.+|+.+|+++
T Consensus       158 ~~i~~~~~-------------------------~~i~g~g~~g~~aiq~a~~~g~~~iiaV  193 (194)
T d1f8fa1         158 KDFPFDQL-------------------------VKFYAFDEINQAAIDSRKGITLKPIIKI  193 (194)
T ss_dssp             TTCCGGGG-------------------------EEEEEGGGHHHHHHHHHHTSCSEEEEEC
T ss_pred             CCCCcccE-------------------------EEEeCcHHHHHHHHHHHHHcCCCEEEEe
Confidence            98875532                         4556889999999999999999777765

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=100.00  E-value=1.6e-37  Score=249.11  Aligned_cols=192  Identities=48%  Similarity=0.834  Sum_probs=166.7

Q ss_pred             CcccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCc
Q 026087            5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE   84 (243)
Q Consensus         5 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~   84 (243)
                      .+.+||||+++++++++|+++|++.|+|+++||||||.+++||++|++++.|.++. .+|.++|||++|+|+++|+++++
T Consensus         4 ~~~~~~KAav~~~~g~~l~i~ev~~P~p~~~eVlVkv~a~gICgsDlh~~~G~~~~-~~P~i~GHE~~G~Vv~~G~~v~~   82 (198)
T d1p0fa1           4 GKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPS-KFPVILGHEAVGVVESIGAGVTC   82 (198)
T ss_dssp             TSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC-CSSBCCCCCEEEEEEEECTTCCS
T ss_pred             CCceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEecccceeeeecccc-ccccccceeeeeeeeecCccccc
Confidence            56689999999999999999999999999999999999999999999999988764 68999999999999999999999


Q ss_pred             CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (243)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp  164 (243)
                      |++||||++.+...|+.|.+|.++..++|+........|.. .++..++...+..++...+.++|+||+.+++..++++|
T Consensus        83 ~~~GdrV~~~~~~~Cg~c~~c~~g~~~~C~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~g~faey~~v~~~~~~kip  161 (198)
T d1p0fa1          83 VKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLM-ADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKID  161 (198)
T ss_dssp             CCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSC-TTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEEEEC
T ss_pred             CcCCCEEEEEeeccccccccccccccccchhhhcccccccc-CCCceeEeeCCeeccccCCCccceeeEEecHHHEEECC
Confidence            99999999999999999999999999999988776555555 56667777888888888889999999999999999999


Q ss_pred             CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHH
Q 026087          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGL  208 (243)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~  208 (243)
                      ++++...++...+..          ..++++++|||.|+|++|+
T Consensus       162 ~~~~~~~~~~~~~~~----------~~v~~~~~vlv~G~G~iGl  195 (198)
T d1p0fa1         162 PKINVNFLVSTKLTL----------DQINKAFELLSSGQGVRSI  195 (198)
T ss_dssp             TTSCGGGGEEEEECG----------GGHHHHHHHTTTSSCSEEE
T ss_pred             CCCCHHHHHHhhcch----------hhcCCCCEEEEECCCcceE
Confidence            999876655433322          2234456688888888775

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=100.00  E-value=3.2e-37  Score=243.58  Aligned_cols=171  Identities=24%  Similarity=0.414  Sum_probs=151.1

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC---CCCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTEVQ   86 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~---~~~~p~~~G~e~vG~V~~~G~~~~~~~   86 (243)
                      +.|++++++++ ++++|++.|+|+++|||||+++++||++|++++.+...   ..++|.++|||++|+|+++|+++++|+
T Consensus         2 ~maAVl~g~~~-l~~~e~~~P~~~~~evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v~~~~   80 (178)
T d1e3ja1           2 NLSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLK   80 (178)
T ss_dssp             CEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSCC
T ss_pred             ceEEEEEcCCc-EEEEEeECCCCCCCEEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecCcccCCCC
Confidence            34566778877 99999999999999999999999999999999886532   236789999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (243)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  166 (243)
                      +||||++.+...|+.|.+|.++..+.|++....   |....+                  |+|+||+++|++.++++|++
T Consensus        81 ~GdrV~~~~~~~~~~c~~c~~g~~~~c~~~~~~---~~~~~~------------------G~~aey~~v~~~~~~~iP~~  139 (178)
T d1e3ja1          81 KGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFC---ATPPDD------------------GNLARYYVHAADFCHKLPDN  139 (178)
T ss_dssp             TTCEEEECCEECCSSSHHHHTTCGGGCTTCEET---TBTTBC------------------CSCBSEEEEEGGGEEECCTT
T ss_pred             CCCEEEECcccccCCccccccCCccccccccce---eccccc------------------cccceeeeecccceeeCCCC
Confidence            999999999999999999999999999877653   222233                  39999999999999999999


Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL  203 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~  203 (243)
                      +++++++.+...+.|+|+++ +.+++++|++|+|+|+
T Consensus       140 ~~~~~aa~~~~~~~ta~~a~-~~~~~~~g~~VlVig~  175 (178)
T d1e3ja1         140 CNVKQLVTHSFKLEQTVDAF-EAARKKADNTIKVMIS  175 (178)
T ss_dssp             CCCGGGEEEEEEGGGHHHHH-HHHHHCCTTCSEEEEE
T ss_pred             CCHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEEcc
Confidence            99999999999999999975 6788999999999975

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=100.00  E-value=1.5e-35  Score=237.70  Aligned_cols=194  Identities=48%  Similarity=0.772  Sum_probs=166.9

Q ss_pred             CCCcccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCC
Q 026087            3 TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV   82 (243)
Q Consensus         3 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~   82 (243)
                      +....++|||+++.+++++++++|++.|+|+++||||||.++|||++|++++.|.++. ++|.++|||++|+|+++|+++
T Consensus         2 ~~~~~~k~KAavl~~~~~~l~i~ev~~P~p~~~eVlVkV~a~giC~sDl~~~~G~~~~-~~P~i~GHE~~G~Vv~vG~~v   80 (198)
T d2jhfa1           2 TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT-PLPVIAGHEAAGIVESIGEGV   80 (198)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-CSSBCCCCSEEEEEEEECTTC
T ss_pred             CCCCceEEEEEEEecCCCCCEEEEEECCCCCCCEEEEEEEEEecccccceeecCCccc-ccceecccceeEEEEecCccc
Confidence            3455688999999999999999999999999999999999999999999999998664 689999999999999999999


Q ss_pred             CcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEE
Q 026087           83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK  162 (243)
Q Consensus        83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  162 (243)
                      +++++||||++.+...|+.|.+|.++..+.|.........|.. .++...+..+|..+++.++.|+|+||+++++..+++
T Consensus        81 ~~~~vGdrV~v~~~~~c~~c~~c~~g~~~~C~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~G~fAEy~~v~~~~~~~  159 (198)
T d2jhfa1          81 TTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAK  159 (198)
T ss_dssp             CSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSC-TTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEE
T ss_pred             cCcCCCCEEEEeeeecccccccccCCccceeccccccccCccc-cCccccccccCceeccCCCCCcccCeEEeCHHHeEE
Confidence            9999999999999999999999999999999998877666665 667777888899999999999999999999999999


Q ss_pred             cCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEE
Q 026087          163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF  201 (243)
Q Consensus       163 lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~  201 (243)
                      +|++++++.++....++.+...   ....+++|++|+|+
T Consensus       160 ~p~~~~~e~l~~~~~~~~~v~~---g~~~l~~G~~VaVi  195 (198)
T d2jhfa1         160 IDAAFALDPLITHVLPFEKINE---GFDLLRSGESIRTI  195 (198)
T ss_dssp             CCTTSCCGGGEEEEEEGGGHHH---HHHHHHTTCCSEEE
T ss_pred             CCCCCCHHHHHHHHHHHHhhhh---CCceeeCCCEEEEE
Confidence            9999887665543333322211   12236789998886

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=7.6e-36  Score=235.00  Aligned_cols=172  Identities=30%  Similarity=0.408  Sum_probs=150.8

Q ss_pred             cccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCc
Q 026087            6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTE   84 (243)
Q Consensus         6 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~   84 (243)
                      .|.||||+++.+++++++++|++.|.|++|||||||++++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++
T Consensus         2 ~P~tMkA~v~~~~g~pl~l~evp~P~~~~~evlVkv~a~gic~~D~~~~~G~~~~~~~~P~i~GhE~~G~V~~~G~~v~~   81 (175)
T d1llua1           2 LPQTMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAVGSGVTR   81 (175)
T ss_dssp             CCSEEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCS
T ss_pred             cchhcEEEEEEeCCCCCEEEEeECCCCCCCEEEEEEEEecCcccchhhhccCccccccCCcCCCCcceEEEEEeCCCccc
Confidence            4679999999999999999999999999999999999999999999999998754 478999999999999999999999


Q ss_pred             CCCCCEEeeec-ccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEc
Q 026087           85 VQPGDHVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (243)
Q Consensus        85 ~~~Gd~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l  163 (243)
                      |++||||.+.+ ...|+.|.+|..+..+.|.....   .|+. .+|                  +|+||+.++++.++++
T Consensus        82 ~~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~---~G~~-~~g------------------g~aey~~v~~~~~~~i  139 (175)
T d1llua1          82 VKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQN---TGYS-VNG------------------GYAEYVLADPNYVGIL  139 (175)
T ss_dssp             CCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEE---BTTT-BCC------------------SSBSEEEECTTTSEEC
T ss_pred             cccCCEEEeccccccCCccccccCCcccccccccc---cccc-ccc------------------ccceEEEechHHEEEC
Confidence            99999998765 55799999999999999987664   3333 333                  8999999999999999


Q ss_pred             CCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEE
Q 026087          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF  201 (243)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~  201 (243)
                      |++++++.++++..++.|+++.+ + ....+|++|||+
T Consensus       140 Pd~l~~~~a~~~~~~~~t~~~~~-~-~g~~~G~~VLVl  175 (175)
T d1llua1         140 PKNVKATIHPGKLDDINQILDQM-R-AGQIEGRIVLEM  175 (175)
T ss_dssp             CTTCCCCEEEECGGGHHHHHHHH-H-TTCCSSEEEEEC
T ss_pred             CCCCChhHHHHHHhHHHHHHHHH-H-hCCCCCCEEEeC
Confidence            99999988888878888888754 3 334579999984

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=2.4e-35  Score=231.28  Aligned_cols=166  Identities=29%  Similarity=0.371  Sum_probs=149.5

Q ss_pred             eEEEEecCCCCeEEEeeccCCC-CCCcEEEEEeEEecChhhHHhhcCCCC---CCCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087           11 KAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTEVQ   86 (243)
Q Consensus        11 ~a~~~~~~~~~~~~~~~~~p~~-~~~evlVkv~a~~i~~~D~~~~~g~~~---~~~~p~~~G~e~vG~V~~~G~~~~~~~   86 (243)
                      ||+++.+.++++++++++.|++ .++||||||++++||++|++.+.|.+.   ...+|.++|||++|+|+++|+++++|+
T Consensus         1 kA~~~~~~g~pl~i~~v~~P~~~~~~eVlVkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~vG~~v~~~~   80 (171)
T d1h2ba1           1 KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLE   80 (171)
T ss_dssp             CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCCSCC
T ss_pred             CEEEEEeCCCCCEEEEeeCCCCCCCCEEEEEEEecccceeeehccCCCcccccCCccccccceeeeeeeecccCCCCcCC
Confidence            7999999999999999999986 689999999999999999999998763   346899999999999999999999999


Q ss_pred             CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (243)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  166 (243)
                      +||||++.+...|+.|..|.++..++|.+...   .|+. .+|                  +|+||+.++.+.++++|++
T Consensus        81 ~GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~iP~~  138 (171)
T d1h2ba1          81 KGDPVILHPAVTDGTCLACRAGEDMHCENLEF---PGLN-IDG------------------GFAEFMRTSHRSVIKLPKD  138 (171)
T ss_dssp             TTCEEEECSCBCCSCSHHHHTTCGGGCTTCBC---BTTT-BCC------------------SSBSEEEECGGGEEECCTT
T ss_pred             CCCEEEEcCccCCCCccccccccccccccccc---ceee-ccc------------------ccceeeeehhhcceecCCC
Confidence            99999999999999999999999999987664   3433 344                  9999999999999999999


Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEE
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAV  200 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV  200 (243)
                      ++++.++++..++.|+|+++ +...+ .|++|||
T Consensus       139 ~~~e~aa~~~~~~~ta~~al-~~~~~-~G~~VlI  170 (171)
T d1h2ba1         139 VRVEVDIHKLDEINDVLERL-EKGEV-LGRAVLI  170 (171)
T ss_dssp             CCCCEEEEEGGGHHHHHHHH-HTTCC-SSEEEEE
T ss_pred             CCHHHHHHHHhHHHHHHHHH-HhcCC-CCCEEEe
Confidence            99988888888999999987 55667 8999998

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=100.00  E-value=5.1e-37  Score=241.78  Aligned_cols=171  Identities=21%  Similarity=0.193  Sum_probs=142.9

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd   89 (243)
                      |||+++.++++ ++++|+|.|.|+++|||||+++++||++|++.+.+.....++|.++|||++|+|+++|+++++|++||
T Consensus         1 MKa~v~~~~~~-l~i~e~p~P~~~~~eVlIkv~a~gic~sD~~~~~~~~~~~~~P~i~GhE~~G~V~~vG~~v~~~~vGd   79 (177)
T d1jqba1           1 MKGFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGSEVKDFKPGD   79 (177)
T ss_dssp             CEEEEEEETTE-EEEEECCCCCCCTTCEEEEEEEECCCHHHHHHHHHCTTCCCSSEECCCCEEEEEEEECTTCCSCCTTC
T ss_pred             CeEEEEEeCCC-eEEEEeeCCCCCCCEEEEEEEEEecCCCcccccccCCCCCCCCccCcceeeEEeeecccccceecCCC
Confidence            89999999998 99999999999999999999999999999988876655557899999999999999999999999999


Q ss_pred             EEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEecc--ceeEEcCCCC
Q 026087           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD--VSVAKIDPQA  167 (243)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~lp~~~  167 (243)
                      ||++.+..+|++|.+|.++.+++|.....+..+|.. .+|                  +|+||+++|.  ..++++|+++
T Consensus        80 rV~v~~~~~cg~c~~C~~g~~~~c~~~~~~~~~g~~-~~G------------------~~aEy~~vp~a~~~l~~iP~~~  140 (177)
T d1jqba1          80 RVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNF-KDG------------------VFGEYFHVNDADMNLAILPKDV  140 (177)
T ss_dssp             EEEECSCCCCSSSHHHHTTCGGGTTSTTTTCCBTTT-BCC------------------SSBSSEEESSHHHHCEECCTTS
T ss_pred             cEEEeeeeccccccchhhhhhcccccccccccccCC-CCh------------------hcCeeEEEEhhhCeEEECCCCc
Confidence            999999999999999999999999987665444433 344                  9999999986  4789999999


Q ss_pred             ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHH
Q 026087          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVA  211 (243)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~  211 (243)
                      ++++++...   .+++..+        ++.+||+|+|++|++++
T Consensus       141 ~~~~~~~~~---~~~~~~~--------~~~vlv~g~gp~gl~aa  173 (177)
T d1jqba1         141 DLSKLVTHV---YHGFDHI--------EEALLLMKDKPKDLIKA  173 (177)
T ss_dssp             CGGGGEEEE---EESGGGH--------HHHHHHHHHCCTTCSEE
T ss_pred             chHHHHHHH---HHHHHHh--------cCceEEECCCHHHhhee
Confidence            987765432   2223222        34477778777776543

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-35  Score=231.74  Aligned_cols=172  Identities=23%  Similarity=0.296  Sum_probs=147.1

Q ss_pred             ccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC---CCCCCeeeeeceEEEEEEeCCCCC
Q 026087            7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVT   83 (243)
Q Consensus         7 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~---~~~~p~~~G~e~vG~V~~~G~~~~   83 (243)
                      +.+++|++++++++ ++++|++.|+|+++||||||++++||++|++.+.+...   ..++|.++|||++|+|+++|++++
T Consensus         5 ~p~~~a~V~~gp~~-l~l~evp~P~p~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~   83 (185)
T d1pl8a1           5 KPNNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVK   83 (185)
T ss_dssp             CCCCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCC
T ss_pred             CCCCEEEEEeCCCe-EEEEEeECCCCCCCEEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEecccee
Confidence            34778999999987 99999999999999999999999999999999976432   236789999999999999999999


Q ss_pred             cCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEc
Q 026087           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (243)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l  163 (243)
                      +|++||||++.+...|+.|.+|.+|+++.|......   |....+|                  +|+||++++.+.++++
T Consensus        84 ~~~~GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~~---g~~~~~G------------------~~aey~~~~~~~~~~l  142 (185)
T d1pl8a1          84 HLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFC---ATPPDDG------------------NLCRFYKHNAAFCYKL  142 (185)
T ss_dssp             SCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEET---TBTTBCC------------------SCBSEEEEEGGGEEEC
T ss_pred             eecccccceecceeccccchhhccchhchhccceee---ecccccc------------------cceEEEEEchHHEEEC
Confidence            999999999999999999999999999999876642   3322333                  8999999999999999


Q ss_pred             CCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCC
Q 026087          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLG  204 (243)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g  204 (243)
                      |+++++++++.++  +.++++++ +..+.++|++||| |+|
T Consensus       143 P~~~~~~~aa~~p--l~~a~~a~-~~~~~~~G~~VlI-g~G  179 (185)
T d1pl8a1         143 PDNVKPLVTHRFP--LEKALEAF-ETFKKGLGLKIML-KCD  179 (185)
T ss_dssp             CTTCGGGEEEEEE--GGGHHHHH-HHHHTTCCSEEEE-ECC
T ss_pred             CCCCCHHHHHHHH--HHHHHHHH-HHhCCCCCCEEEE-EeC
Confidence            9999999887654  44566653 5667899999998 444

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-34  Score=229.92  Aligned_cols=181  Identities=18%  Similarity=0.244  Sum_probs=150.6

Q ss_pred             CcccceeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCC
Q 026087            5 GQVITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV   82 (243)
Q Consensus         5 ~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~   82 (243)
                      +.|.||||+++.+++..  +++.+++.++++++||||||+++|||++|++++.|.++..++|.++|||++|+|+++|+++
T Consensus         2 ~~P~~~ka~~~~~~~~~~~~~~~~~~p~p~~~~eVlVkv~a~giC~sDl~~~~g~~~~~~~P~i~GHE~~G~Vv~vG~~v   81 (192)
T d1piwa1           2 SYPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKS   81 (192)
T ss_dssp             CTTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECTTC
T ss_pred             CCCceeEEEEEeCCCcCCcceEeeccCCCCCCCeEEEEEeeeCCCcchHHHHcCCCCCCCCCcCcccccccchhhccccc
Confidence            46789999999988754  7778887777899999999999999999999999988777899999999999999999998


Q ss_pred             -CcCCCCCEEeeecc-cCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEecccee
Q 026087           83 -TEVQPGDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV  160 (243)
Q Consensus        83 -~~~~~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  160 (243)
                       +.+++||||.+.+. ..|+.|.+|..++.+.|.........  ...+|             ....|+|+||++++++.+
T Consensus        82 ~~~~k~GdrV~~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~--~~~~G-------------~~~~Ggfaey~~v~~~~~  146 (192)
T d1piwa1          82 NSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQ--PYEDG-------------YVSQGGYANYVRVHEHFV  146 (192)
T ss_dssp             CSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSC--BCTTS-------------CBCCCSSBSEEEEEGGGE
T ss_pred             ccccCCCCeeeEeeeccCCCCchhhhcCCccccccccccccc--ccccc-------------cccccceeeEEEeehHHe
Confidence             56999999987764 47999999999999999886543111  00111             223459999999999999


Q ss_pred             EEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEE
Q 026087          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF  201 (243)
Q Consensus       161 ~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~  201 (243)
                      +++|+++++++|+.+...+.|||+++ +.+++++|++|||.
T Consensus       147 ~~iP~~l~~e~Aal~~~~~~ta~~~l-~~~~vk~g~~Vvv~  186 (192)
T d1piwa1         147 VPIPENIWVETLPVGEAGVHEAFERM-EKGDVRYRFTLVGY  186 (192)
T ss_dssp             EECCTTCCEEEEESSHHHHHHHHHHH-HHTCCSSEEEEECC
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEE
Confidence            99999999987765554567899966 67899999999985

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.2e-34  Score=227.76  Aligned_cols=174  Identities=24%  Similarity=0.369  Sum_probs=143.9

Q ss_pred             ccceeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCC---
Q 026087            7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT---   83 (243)
Q Consensus         7 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~---   83 (243)
                      .+.|||+++.++++++++++++.|+|++|||||||.++|||++|++++.|.++..++|.++|||++|+|+++|++++   
T Consensus         2 ~~k~kA~v~~~~~~pl~i~ev~~P~~~~~evlVkv~a~gIC~sD~~~~~G~~~~~~~P~vlGHE~~G~V~~vG~~v~~~~   81 (184)
T d1vj0a1           2 GLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVNGEKRDLN   81 (184)
T ss_dssp             CEEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEESSCCBCTT
T ss_pred             CceEEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEECCCCCchhheeccCCccccccccceeeeeeeeEEeccccccc
Confidence            35789999999999999999999999999999999999999999999999887778999999999999999999986   


Q ss_pred             --cCCCCCEEeeecccCCCCCccccCCCCC-CCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEec-cce
Q 026087           84 --EVQPGDHVIPCYQAECRECKFCKSGKTN-LCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH-DVS  159 (243)
Q Consensus        84 --~~~~Gd~V~~~~~~~~~~c~~c~~~~~~-~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~  159 (243)
                        .+++||+|++.+..+|++|.+|+.|+.. .|.+...   +|+..  +         ......-.|+|+||+.++ ...
T Consensus        82 ~~~~~~Gd~V~~~~~~~Cg~C~~C~~g~~~~~c~~~~~---~G~~~--~---------~~~~~~~~Gg~ae~~~v~~~~~  147 (184)
T d1vj0a1          82 GELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV---YGINR--G---------CSEYPHLRGCYSSHIVLDPETD  147 (184)
T ss_dssp             SCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEE---TTTTC--C---------SSSTTCCCSSSBSEEEECTTCC
T ss_pred             cccccceeeeEeccccccccChhHhCccccccCCCcee---eccCC--C---------CCCCCCcceeCcCcEEechhHc
Confidence              4689999999999999999999999964 5776553   22210  0         000011234999999995 578


Q ss_pred             eEEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEE
Q 026087          160 VAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF  201 (243)
Q Consensus       160 ~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~  201 (243)
                      ++++|+++++++      ++.+|++++ +.+.+++|++|||+
T Consensus       148 v~~ip~~l~~~~------pl~~A~~a~-~~~~~~~G~~VlI~  182 (184)
T d1vj0a1         148 VLKVSEKITHRL------PLKEANKAL-ELMESREALKVILY  182 (184)
T ss_dssp             EEEECTTCCEEE------EGGGHHHHH-HHHHHTSCSCEEEE
T ss_pred             EEECCCCCCHHH------HHHHHHHHH-HHhCCCcCCEEEEe
Confidence            999999998653      345677754 67889999999997

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=1.5e-36  Score=243.79  Aligned_cols=191  Identities=21%  Similarity=0.256  Sum_probs=154.2

Q ss_pred             eeEEEEecCCCCeEEEeeccCCC-------CCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPP-------QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV   82 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~-------~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~   82 (243)
                      +||++|.++++ ++++|++.|++       .++||+|||.+++||++|++++.|.++. ++|.++|||++|+|+++|+++
T Consensus         2 ~kA~v~~~~~~-le~~e~~~P~~~~p~~~p~~~eVlVkv~a~giC~sDl~~~~G~~~~-~~P~v~GHE~~G~Vv~vG~~V   79 (201)
T d1kola1           2 NRGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTA-QVGLVLGHEITGEVIEKGRDV   79 (201)
T ss_dssp             EEEEEEEETTE-EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSCC-CTTCBCCCCEEEEEEEECTTC
T ss_pred             cEEEEEeCCCc-eEEEEecCCcccCCCCCCCCCEEEEEEEEEEEcchhhhhhcCCccc-ccceeccceeeeeeecccccc
Confidence            69999999997 99999999865       4699999999999999999999998764 689999999999999999999


Q ss_pred             CcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEecc--cee
Q 026087           83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD--VSV  160 (243)
Q Consensus        83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~  160 (243)
                      ++|++||||++.+..+|++|.+|.+++++.|.........|......            .....|+|+||+++|.  ..+
T Consensus        80 ~~~~vGdrV~v~~~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~g~~~------------~~~~~Gg~aeyv~vp~~~~~l  147 (201)
T d1kola1          80 ENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVD------------MGDWTGGQAEYVLVPYADFNL  147 (201)
T ss_dssp             CSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTT------------SCCBCCCSBSEEEESSHHHHC
T ss_pred             ccccccceeEEeeeeeccCChhhhCCCcccccccccccccccccccC------------CCccccccccEEEeehHHCeE
Confidence            99999999999999999999999999999997765443333221100            0112359999999985  479


Q ss_pred             EEcCCCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCC
Q 026087          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA  219 (243)
Q Consensus       161 ~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~  219 (243)
                      ++||++.++.+++.+...+.++++++ .....+.+    ++|+|++|++++|+||.+|+
T Consensus       148 ~~iPd~~~~~~~~~~~~~~~~~~~a~-~~~~~~~g----~~g~G~vG~~~i~~ak~~GA  201 (201)
T d1kola1         148 LKLPDRDKAMEKINIAEVVGVQVISL-DDAPRGYG----EFDAGVPKKFVIDPHKTFSA  201 (201)
T ss_dssp             EECSCHHHHHHTCCHHHHHTEEEECG-GGHHHHHH----HHHHTCSCEEEECTTCSSCC
T ss_pred             EECCCCCChHHHHHHHHHHHHHHHHH-HhCCCCCe----EEeeCHHHHHHHHHHHHcCC
Confidence            99999877767666666666777754 33333334    24889999999999999885

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=3.2e-33  Score=220.20  Aligned_cols=166  Identities=25%  Similarity=0.391  Sum_probs=138.6

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCC--------CCCCCeeeeeceEEEEEEeCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP--------EGLFPCILGHEAAGIVESVGEG   81 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~--------~~~~p~~~G~e~vG~V~~~G~~   81 (243)
                      |||+++.+++++++++|++.|+|++|||||||.+++||++|++++.|.++        ..++|.++|||++|+|+++|+.
T Consensus         1 MKA~~~~~~G~pl~i~dv~~P~p~~~eVlVkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~~~g~~   80 (177)
T d1jvba1           1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE   80 (177)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred             CeEEEEEeCCCCCEEEEeeCCCCCCCEEEEEEEEEecccceeeeecCcccccccccccccCCCccccceEEEEEeeeccC
Confidence            89999999999999999999999999999999999999999999998642        2378999999999999999999


Q ss_pred             CCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccce-e
Q 026087           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS-V  160 (243)
Q Consensus        82 ~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~  160 (243)
                      +++|++||||++.+...|+.|.+|.+++++.|+....   +|.. .+|                  +|+||+.+++.. +
T Consensus        81 v~~~~~GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~---~g~~-~~G------------------~~aey~~vp~~~~~  138 (177)
T d1jvba1          81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRW---LGIN-FDG------------------AYAEYVIVPHYKYM  138 (177)
T ss_dssp             CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEE---BTTT-BCC------------------SSBSEEEESCGGGE
T ss_pred             ccccccCceEeeeeccccccccccccccccccCCcce---eeec-ccc------------------ccccEEEEEhHHeE
Confidence            9999999999999999999999999999999987654   2332 334                  999999998755 5


Q ss_pred             EEcCCCCChhhhhhc-ccccchhhhhhhhcCCCCCCCEEEE
Q 026087          161 AKIDPQAPLDKVCLL-GCGVPTGLGAVWNTAKVEPGSIVAV  200 (243)
Q Consensus       161 ~~lp~~~~~~~aa~l-~~~~~ta~~~~~~~~~~~~g~~vlV  200 (243)
                      +++|+ +++.+++++ ..++.++++++ ...+. .|++|||
T Consensus       139 ~~~~~-~~~~~~a~~~~~~~~~a~~~~-~~~~~-~G~~VlI  176 (177)
T d1jvba1         139 YKLRR-VKPMITKTMKLEEANEAIDNL-ENFKA-IGRQVLI  176 (177)
T ss_dssp             EECSS-SCCCCEEEEEGGGHHHHHHHH-HTTCC-CSEEEEE
T ss_pred             EECCC-CChHHHHHHHHHHHHHHHHHH-Hhhcc-cCCceEC
Confidence            56555 454555544 45777888865 44444 5899987

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=6.1e-33  Score=217.41  Aligned_cols=168  Identities=30%  Similarity=0.472  Sum_probs=141.5

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCC-CCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-PEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~-~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G   88 (243)
                      |||+++.+.+++++++|++.|.|++|||||||++++||++|++.+.+.. ....+|.++|||++|+|+++|++++++++|
T Consensus         1 MkA~v~~~~g~pl~i~~v~~P~~~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~p~v~GhE~~G~Vv~vG~~v~~~~vG   80 (171)
T d1rjwa1           1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVG   80 (171)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEecCCCCcEEEEeECCCCCCCeEEEEEEEeeccccceeeeecccccccccccccCCEEEEEEEEecccccCceee
Confidence            8999999999999999999999999999999999999999999988654 444789999999999999999999999999


Q ss_pred             CEEeeecc-cCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCC
Q 026087           89 DHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (243)
Q Consensus        89 d~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~  167 (243)
                      |||.+.+. ..|+.|..|..+..+.|.....   .|.. .+|                  +|+||++++++.++++|+++
T Consensus        81 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~iP~~~  138 (171)
T d1rjwa1          81 DRVGIPWLYSACGHCDYCLSGQETLCEHQKN---AGYS-VDG------------------GYAEYCRAAADYVVKIPDNT  138 (171)
T ss_dssp             CEEEECSEEECCSCSHHHHTTCGGGCTTCEE---BTTT-BCC------------------SSBSEEEEEGGGCEECCTTC
T ss_pred             eEEeeccccccccccccccCCCccccccccc---ccee-ccC------------------ccccceEecHHHEEECCCCC
Confidence            99987764 4689999999999999987654   3333 333                  99999999999999999999


Q ss_pred             ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC
Q 026087          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL  203 (243)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~  203 (243)
                      +++.|+ +. .+.++++++. ...+ +|++|||+|.
T Consensus       139 ~~e~A~-l~-~~~~~~~~~~-~~~~-~G~tVlViG~  170 (171)
T d1rjwa1         139 IIEVQP-LE-KINEVFDRML-KGQI-NGRVVLTLED  170 (171)
T ss_dssp             CEEEEE-GG-GHHHHHHHHH-TTCC-SSEEEEECCC
T ss_pred             CHHHHH-HH-HHHHHHHHHH-hcCC-CCCEEEEeCC
Confidence            986554 33 3456666553 3444 5999999873

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2.6e-32  Score=215.10  Aligned_cols=160  Identities=26%  Similarity=0.425  Sum_probs=131.1

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~Gd   89 (243)
                      |||++.++++++|+++|++.|+|++|||||||.+++||++|++.+.|.+....+|.++|||++|+|+++|++++++++||
T Consensus         1 m~a~~~~~~~~pl~i~ev~~P~pg~geVlVkv~a~gic~sDl~~~~g~~~~~~~P~i~GhE~~G~V~~vG~~V~~~~vGd   80 (179)
T d1uufa1           1 IKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKYAPGD   80 (179)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEECTTCCSCCTTC
T ss_pred             CeEEEEccCCCCCEEEEecCCCCCCCEEEEEEEEECCCCCcceeeeeeeccccccccccccccccchhhccccccCCCCC
Confidence            79999999999999999999999999999999999999999999999887778999999999999999999999999999


Q ss_pred             EEeeec-ccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCC
Q 026087           90 HVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (243)
Q Consensus        90 ~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~  168 (243)
                      +|.+.+ ...|++|.+|.++++++|++..... .+.....+             ....|+|+||+.++++.++++|+...
T Consensus        81 rV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~~-~~~~~~~~-------------~~~~GgfaEy~~v~~~~~~~ip~~~~  146 (179)
T d1uufa1          81 LVGVGCIVDSCKHCEECEDGLENYCDHMTGTY-NSPTPDEP-------------GHTLGGYSQQIVVHERYVLRIRVADI  146 (179)
T ss_dssp             EEEECSEEECCSSSHHHHTTCGGGCTTCEETT-TSBCSSTT-------------SBCCCSSBSEEEEEGGGCEECCCCCE
T ss_pred             EEEEcccccccCccccccCcccccCCCccccc-cccCCCCC-------------cccccccceEEEechHHEEECCCCCc
Confidence            998776 4579999999999999999865321 11110000             11235999999999999999996654


Q ss_pred             hhhhhhcccccchhhhhh
Q 026087          169 LDKVCLLGCGVPTGLGAV  186 (243)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~  186 (243)
                      ....+   .++.++++++
T Consensus       147 ~~~~a---~~l~~a~~a~  161 (179)
T d1uufa1         147 EMIRA---DQINEAYERM  161 (179)
T ss_dssp             EEECG---GGHHHHHHHH
T ss_pred             ChhHh---chhHHHHHHH
Confidence            33222   2345666655

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.4e-30  Score=198.31  Aligned_cols=145  Identities=20%  Similarity=0.305  Sum_probs=130.2

Q ss_pred             ceeEEEEecCCCC--eEEE-eeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCc
Q 026087            9 TCKAAVAWEPNKP--LVIE-DVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTE   84 (243)
Q Consensus         9 ~~~a~~~~~~~~~--~~~~-~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~   84 (243)
                      .|||+++++.+.+  ++++ +++.|+|++|||||||++++||++|++.+.|.+.. ..+|.++|||++|+|+++|+++++
T Consensus         2 ~MkAv~~~~~G~p~~l~~~~~~~~P~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~~vG~~v~~   81 (150)
T d1yb5a1           2 LMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASA   81 (150)
T ss_dssp             EEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTCTT
T ss_pred             ceeEEEEEccCCcceEEEEeecCCCCCCCCeEEEEEEEecCcccchhhhcCCcCccccccccCccceeeeeEeecceeec
Confidence            5899999988766  7774 68999999999999999999999999999987755 378899999999999999999999


Q ss_pred             CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (243)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp  164 (243)
                      |++||||+..+.                              .+                  |+|+||+.++++.++++|
T Consensus        82 ~~vGdrV~~~~~------------------------------~~------------------G~~ae~~~v~~~~~~~iP  113 (150)
T d1yb5a1          82 FKKGDRVFTSST------------------------------IS------------------GGYAEYALAADHTVYKLP  113 (150)
T ss_dssp             CCTTCEEEESCC------------------------------SS------------------CSSBSEEEEEGGGEEECC
T ss_pred             cccCcccccccc------------------------------cc------------------cccccccccccccccccc
Confidence            999999975432                              22                  389999999999999999


Q ss_pred             CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEE
Q 026087          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF  201 (243)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~  201 (243)
                      +++++++|++++++..|+|++++.....+.|+++||+
T Consensus       114 ~~ls~~~Aa~~~~~~~ta~~~~~~~g~~~~G~~vliL  150 (150)
T d1yb5a1         114 EKLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  150 (150)
T ss_dssp             TTCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             CCCCHHHHHHhhhhhhhehhhheEEcCcccCCEEEEC
Confidence            9999999999999999999988888889999999984

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=2.1e-28  Score=186.75  Aligned_cols=141  Identities=22%  Similarity=0.290  Sum_probs=121.7

Q ss_pred             eEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087           11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (243)
Q Consensus        11 ~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~~~~~~~G   88 (243)
                      +++.|++.|.+  |++++++.|+|++|||+|||++++||++|++++.|.++...+|.++|||++|+|+++|+++++|++|
T Consensus         2 ~~i~~~~~G~pe~l~~~e~~~P~p~~~eVlVkv~a~~in~~D~~~~~G~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vG   81 (147)
T d1qora1           2 TRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIKAG   81 (147)
T ss_dssp             EEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             eEEEEcccCCCceeEEEEecCCCCCCCEEEEEEEEecccceeeeeecCCCCCCcceeeeccccccceeeeeeeccccccc
Confidence            46788888877  9999999999999999999999999999999999998877899999999999999999999999999


Q ss_pred             CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCC
Q 026087           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (243)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~  168 (243)
                      |||+....                              .                  .|+|+||+.++.+.++++|++++
T Consensus        82 drV~~~~~------------------------------~------------------~G~~ae~~~v~~~~~~~~P~~~~  113 (147)
T d1qora1          82 DRVVYAQS------------------------------A------------------LGAYSSVHNIIADKAAILPAAIK  113 (147)
T ss_dssp             CEEEESCC------------------------------S------------------SCCSBSEEEEEGGGEEECCTTSC
T ss_pred             ceeeeecc------------------------------c------------------cccceeEEEEehHHeEEcCcccc
Confidence            99963211                              1                  23899999999999999999998


Q ss_pred             hhhhh--hcccccchhhhhhhhcCCCCCCCEEEE
Q 026087          169 LDKVC--LLGCGVPTGLGAVWNTAKVEPGSIVAV  200 (243)
Q Consensus       169 ~~~aa--~l~~~~~ta~~~~~~~~~~~~g~~vlV  200 (243)
                      +++++  ++++...++++++++ .++++|++|||
T Consensus       114 ~~~a~a~~~~~~~~~~~~~l~~-~~~~~G~~VLI  146 (147)
T d1qora1         114 VDVAEQQKYPLKDAQRAHEILE-SRATQGSSLLI  146 (147)
T ss_dssp             CCCCGGGEEEGGGHHHHHHHHH-TTCCCBCCEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEe
Confidence            87554  455666677776654 67899999998

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.95  E-value=2.4e-28  Score=187.53  Aligned_cols=147  Identities=15%  Similarity=0.192  Sum_probs=124.1

Q ss_pred             ceeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcC
Q 026087            9 TCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEV   85 (243)
Q Consensus         9 ~~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~   85 (243)
                      +|||+++.+.+++  +++++++.|+|++|||||||++++||++|++.+.|.++. .+.|.++|||++|+|++  ..++.|
T Consensus         3 ~~KA~v~~~~~~~~~~~i~~v~~P~~~~~eVlVkV~a~gin~~D~~~~~g~~~~~~~~p~v~g~e~~G~v~~--~~~~~~   80 (152)
T d1xa0a1           3 AFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVS--SQHPRF   80 (152)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEE--CCSSSC
T ss_pred             ceEEEEEEecCCceEEEEEEccCCCCCCCEEEEEEEEeCCChHHHHHHhhcccccccccceeeeeeeeeeec--cCCCcc
Confidence            8999999999887  457899999999999999999999999999999887653 47899999999999999  556789


Q ss_pred             CCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCC
Q 026087           86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (243)
Q Consensus        86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~  165 (243)
                      ++||+|......                        .+.. .                  .|+|+||+.+|++.++++|+
T Consensus        81 ~~g~~v~~~~~~------------------------~~~~-~------------------~G~~aEy~~v~~~~~~~iP~  117 (152)
T d1xa0a1          81 REGDEVIATGYE------------------------IGVT-H------------------FGGYSEYARLHGEWLVPLPK  117 (152)
T ss_dssp             CTTCEEEEESTT------------------------BTTT-B------------------CCSSBSEEEECGGGCEECCT
T ss_pred             ccCCEEEEecCc------------------------cccc-c------------------CCCcceeeeehhhccccCCC
Confidence            999999754320                        0111 2                  24999999999999999999


Q ss_pred             CCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEc
Q 026087          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFG  202 (243)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G  202 (243)
                      +++ .+|++++++..|++.++....+++ |++|||+|
T Consensus       118 ~l~-~~aa~l~~a~~ta~~~~~~~~~~~-G~tVL~l~  152 (152)
T d1xa0a1         118 GLE-RIAQEISLAELPQALKRILRGELR-GRTVVRLA  152 (152)
T ss_dssp             THH-HHEEEEEGGGHHHHHHHHHHTCCC-SEEEEECC
T ss_pred             CCC-HHHHHHHHHHHHHHHHHHHhcCCC-CCEEEEcC
Confidence            998 468888889899988887888876 99999975

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=4e-28  Score=181.47  Aligned_cols=130  Identities=18%  Similarity=0.200  Sum_probs=116.7

Q ss_pred             eeEEEEecCCCCeEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCCCC
Q 026087           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQPG   88 (243)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~~G   88 (243)
                      |||+++.+.+++++++|++.|.|+++||+||+++++||++|++.+.|.++. ..+|.++|||++|+|           +|
T Consensus         1 MkA~~~~~~G~~l~~~e~~~p~p~~~eVlVkv~a~gin~~D~~~~~G~~~~~~~~P~v~G~E~~G~V-----------vG   69 (131)
T d1iz0a1           1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVV-----------EG   69 (131)
T ss_dssp             CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEE-----------TT
T ss_pred             CcEEEEccCCCCCEEEEccCCCCCCCEEEEEEEEEeccccccccccccccccccceeEeeeeeEEee-----------cc
Confidence            899999999999999999999999999999999999999999999998755 379999999999999           39


Q ss_pred             CEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCCCC
Q 026087           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (243)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~  168 (243)
                      |+|....                               .                  +|+|+||+.++++.++++|++++
T Consensus        70 d~V~~~~-------------------------------~------------------~G~~aey~~v~~~~~~~~P~~~~  100 (131)
T d1iz0a1          70 RRYAALV-------------------------------P------------------QGGLAERVAVPKGALLPLPEGRP  100 (131)
T ss_dssp             EEEEEEC-------------------------------S------------------SCCSBSEEEEEGGGCEECCTTCC
T ss_pred             ceEEEEe-------------------------------c------------------cCccceeeeeCHHHeEEccCCCC
Confidence            9997432                               1                  23899999999999999999999


Q ss_pred             hhhhhhcccccchhhhhhhhcCCCCCCCEEEEE
Q 026087          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF  201 (243)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~  201 (243)
                      +++|+++.+++.|||+++.+..  +.|++||++
T Consensus       101 ~~~aa~~~~~~~Ta~~al~~~g--~~g~tvl~l  131 (131)
T d1iz0a1         101 VVGPVFPFAEAEAAFRALLDRG--HTGKVVVRL  131 (131)
T ss_dssp             CEEEEEEGGGHHHHHHHTTCTT--CCBEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc--cCCCEEEEC
Confidence            9999999999999999987765  459999873

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.93  E-value=2.2e-27  Score=185.87  Aligned_cols=156  Identities=21%  Similarity=0.148  Sum_probs=127.9

Q ss_pred             ccceeEEEEecCCCC---e--EEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCC----------CCCeeeeece
Q 026087            7 VITCKAAVAWEPNKP---L--VIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG----------LFPCILGHEA   71 (243)
Q Consensus         7 ~~~~~a~~~~~~~~~---~--~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~----------~~p~~~G~e~   71 (243)
                      |+|+||+++.+.++|   +  +..+++.|.|+++||||||++++||++|++.++|.++..          .+|.++|+|+
T Consensus         1 m~t~kA~v~~~~G~p~~~l~l~~~~~p~p~~~~~eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~   80 (175)
T d1gu7a1           1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEG   80 (175)
T ss_dssp             CEEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCC
T ss_pred             CceeEEEEEccCCCcccccEEEEEECCCCCCCcCEEEEEEEEeccCcceeEEEecCcccccccccccCCCCCCccccccc
Confidence            359999999998876   3  445777778899999999999999999999998875321          5788999999


Q ss_pred             EEEEEEeCCCCCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceee
Q 026087           72 AGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQ  151 (243)
Q Consensus        72 vG~V~~~G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~  151 (243)
                      +|+|++.+..+..++.||+|.....                              .                  .|+|+|
T Consensus        81 ~g~V~~~~~~~~~~~~g~~v~~~~~------------------------------~------------------~g~~ae  112 (175)
T d1gu7a1          81 LFEVIKVGSNVSSLEAGDWVIPSHV------------------------------N------------------FGTWRT  112 (175)
T ss_dssp             EEEEEEECTTCCSCCTTCEEEESSS------------------------------C------------------CCCSBS
T ss_pred             ccccccccccccccccccceecccc------------------------------c------------------cccccc
Confidence            9999999999999999999974322                              1                  238999


Q ss_pred             EEEeccceeEEcCCCCChhhhhhcccccchhhhhhhh-cCCCCCCCEEEEEc-C-CHHHHHHHH
Q 026087          152 YTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN-TAKVEPGSIVAVFG-L-GTVGLAVAE  212 (243)
Q Consensus       152 ~~~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~-~~~~~~g~~vlV~G-~-g~~G~~a~~  212 (243)
                      |+.++++.++++|++++.+.  ++.+...|+|+++.. ...+++|++|||+| + |.+|.+++|
T Consensus       113 y~~v~~~~~~~iP~~~~~~~--a~~~~~~ta~~~l~~~~~~~~~g~~vli~gaa~~gvG~~~iQ  174 (175)
T d1gu7a1         113 HALGNDDDFIKLPNPAQSKA--NGKPNGLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLIT  174 (175)
T ss_dssp             EEEEEGGGEEEECCHHHHHH--TTCSCCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEE
T ss_pred             eeeehhhhccCCCccchhhh--hccchHHHHHHHHHHHhcCCCCCCEEEEECccchhhhheEEe
Confidence            99999999999999775443  345678889987764 46799999999997 4 679987765

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.92  E-value=1.2e-26  Score=179.73  Aligned_cols=150  Identities=17%  Similarity=0.144  Sum_probs=125.2

Q ss_pred             cceeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCC-CCCeeeeeceEEEEEEeCCCCCc
Q 026087            8 ITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVGEGVTE   84 (243)
Q Consensus         8 ~~~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~-~~p~~~G~e~vG~V~~~G~~~~~   84 (243)
                      .+|||+++.++++.  +++++++.|++++|||||||+|++||++|++.+.|.++.. ..|.++|+|++|+|++  +.+.+
T Consensus         2 ~~~ka~~~~~~g~~~~l~~~~v~~p~l~~~eVLVkV~a~gin~~D~~~~~g~~~~~~~~~~~~g~e~~G~v~~--~~~~~   79 (162)
T d1tt7a1           2 TLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVS--SNDPR   79 (162)
T ss_dssp             CEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEE--CSSTT
T ss_pred             CcEEEEEEEecCCCeEEEEEEcCCCCCCCCEEEEEEEEecccchhhheeeecccccccceeeeeeeccccccc--ccccc
Confidence            37999999987655  8999999999999999999999999999999999987643 6789999999999998  55678


Q ss_pred             CCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcC
Q 026087           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (243)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp  164 (243)
                      +++||+|......                        .|.. .+                  |+|+||+.+|++.++++|
T Consensus        80 ~~~g~~v~~~~~~------------------------~g~~-~~------------------G~~aey~~v~~~~l~~iP  116 (162)
T d1tt7a1          80 FAEGDEVIATSYE------------------------LGVS-RD------------------GGLSEYASVPGDWLVPLP  116 (162)
T ss_dssp             CCTTCEEEEESTT------------------------BTTT-BC------------------CSSBSSEEECGGGEEECC
T ss_pred             cccceeeEeeecc------------------------ceec-cc------------------cccceEEEecHHHEEECC
Confidence            9999999765431                        1111 22                  399999999999999999


Q ss_pred             CCCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC
Q 026087          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL  203 (243)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~  203 (243)
                      +++++++||.+++...|+|.++.. ...+.+++|||+|+
T Consensus       117 ~~ls~~~Aa~~~~~~~ta~~~~~~-~~~~~~~~Vli~ga  154 (162)
T d1tt7a1         117 QNLSLKEAMVDQLLTIVDREVSLE-ETPGALKDILQNRI  154 (162)
T ss_dssp             TTCCHHHHHHSCSTTSEEEEECST-THHHHHHHTTTTCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECC
Confidence            999999999999999999986533 34555677888776

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=6.3e-25  Score=166.97  Aligned_cols=130  Identities=15%  Similarity=0.180  Sum_probs=108.9

Q ss_pred             eeEEEEecCCCC--eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCC-CCCCeeeeeceEEEEEEeCCCCCcCC
Q 026087           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (243)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~V~~~G~~~~~~~   86 (243)
                      |||+++.+++++  +++++++.|+|++|||+|||+|++||++|.....|.++. ..+|.++|+|++|+|+++|.  +.++
T Consensus         1 MkA~v~~~~~~~~~l~i~~v~~p~~~~geVlVkV~a~gin~~D~~~~~G~~~~~~~~p~v~G~e~~G~V~~~~~--~~~~   78 (146)
T d1o89a1           1 LQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIPGIDFAGTVRTSED--PRFH   78 (146)
T ss_dssp             CEEEEEECC---CEEEEEECCGGGSCSCSEEEEEEEEECCHHHHHHHHTCSSCCCSSSBCCCSEEEEEEEEECS--TTCC
T ss_pred             CeEEEEEcCCCceEEEEEEcCCCCCCCCEEEEEEeeccCccceeeEEEeecccccccceeccccccccceeecc--CCcc
Confidence            899999998876  778999999999999999999999999999999998654 37899999999999999766  4799


Q ss_pred             CCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeEEcCCC
Q 026087           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (243)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  166 (243)
                      +||+|.+....                        .|.. .                  .|+|+||+.+|++.++++|++
T Consensus        79 ~g~~v~~~~~~------------------------~g~~-~------------------~G~~Aey~~v~~~~vv~lP~~  115 (146)
T d1o89a1          79 AGQEVLLTGWG------------------------VGEN-H------------------WGGLAEQARVKGDWLVAMPQG  115 (146)
T ss_dssp             TTCEEEEECTT------------------------BTTT-B------------------CCSSBSEEEECGGGCEECCTT
T ss_pred             ceeeEEeeccc------------------------ceec-C------------------CCcceeeeeeeeeeEEECCCC
Confidence            99999764320                        1111 2                  249999999999999999999


Q ss_pred             CChhhhhhcccccchhhh
Q 026087          167 APLDKVCLLGCGVPTGLG  184 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~  184 (243)
                      +|+++||+++++..||+.
T Consensus       116 ls~~eAA~l~~a~~tA~~  133 (146)
T d1o89a1         116 QAAKEISLSEAPNFAEAI  133 (146)
T ss_dssp             SCCEEECGGGHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            999999999988777754

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.67  E-value=6.9e-16  Score=116.28  Aligned_cols=133  Identities=14%  Similarity=0.147  Sum_probs=98.9

Q ss_pred             cceeEEEEecC--CCC----eEEEeeccCCCCCCcEEEEEeEEecChhhHHhhcCCCCCCCCCeeeeeceEEEEEEeCCC
Q 026087            8 ITCKAAVAWEP--NKP----LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG   81 (243)
Q Consensus         8 ~~~~a~~~~~~--~~~----~~~~~~~~p~~~~~evlVkv~a~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~V~~~G~~   81 (243)
                      ++.|++++.+.  +.|    |++++.++|+|++||||||+++.++++.........    +....+..+.+|+|++  |+
T Consensus         2 ~~~k~~vl~~~P~G~P~~~~f~l~e~~ip~~~~gevLvk~~~~svDp~~R~~~~~~----~~g~~~~g~~vg~Vv~--S~   75 (147)
T d1v3va1           2 VKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIASKRL----KEGAVMMGQQVARVVE--SK   75 (147)
T ss_dssp             CEEEEEEESSCCCSSCCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHGGGS----CTTSBCCCCEEEEEEE--ES
T ss_pred             cccEEEEEccCCCCCCcccceEEEEEECCCCCCCEEEEEEEEEeEccccccccccc----ccCCccccceEEEEEE--eC
Confidence            46788888875  433    999999999999999999999999987655433221    2223456688999998  67


Q ss_pred             CCcCCCCCEEeeecccCCCCCccccCCCCCCCCCccCCCCCceecCCCccccccCCcceeeecCCcceeeEEEeccceeE
Q 026087           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA  161 (243)
Q Consensus        82 ~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  161 (243)
                      .++|++||+|...                                                    ++|+||.+.+.+.+.
T Consensus        76 ~~~f~~GD~V~g~----------------------------------------------------~gw~ey~v~~~~~l~  103 (147)
T d1v3va1          76 NSAFPAGSIVLAQ----------------------------------------------------SGWTTHFISDGKGLE  103 (147)
T ss_dssp             CTTSCTTCEEEEC----------------------------------------------------CCSBSEEEECSSSCE
T ss_pred             CCcccCCCEEEEc----------------------------------------------------cCCEeEEEeccceee
Confidence            7889999999621                                                    279999999999999


Q ss_pred             EcCCCCC-----hhhhhhcccccchh-hhhhhhcCCCCCCCEEEE
Q 026087          162 KIDPQAP-----LDKVCLLGCGVPTG-LGAVWNTAKVEPGSIVAV  200 (243)
Q Consensus       162 ~lp~~~~-----~~~aa~l~~~~~ta-~~~~~~~~~~~~g~~vlV  200 (243)
                      ++|++..     ....+++....+|| |..+.  ...+.|++||+
T Consensus       104 kv~~~~~~~~~~~~~~~~lG~~Gmtaay~gl~--~~~k~Getvv~  146 (147)
T d1v3va1         104 KLLTEWPDKKIQYHEHVTKGFENMPAAFIEML--NGANLGKAVVT  146 (147)
T ss_dssp             ECCTTCCTTSSCCCEEEEECGGGHHHHHHHHH--TTCCSSEEEEE
T ss_pred             EccccccccccchhhhHhccccchHHHHHHhh--CCCCCCCEEEe
Confidence            9986543     22345566677775 43443  33577999987

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.59  E-value=1.1e-15  Score=118.51  Aligned_cols=75  Identities=51%  Similarity=0.816  Sum_probs=71.1

Q ss_pred             ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +|.+||++.|++.|+|+++.+.+++++||+|+|+|+|++|++++|+++++|+++|++++++++|+++++++||+.
T Consensus         1 ~P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~   75 (174)
T d1p0fa2           1 APLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATE   75 (174)
T ss_dssp             CCGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSE
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcE
Confidence            356799999999999999989999999999999999999999999999999989999999999999999999984

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.56  E-value=3.6e-15  Score=115.44  Aligned_cols=75  Identities=65%  Similarity=1.039  Sum_probs=70.7

Q ss_pred             ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      .+++||++.|++.|+|+++.+..++++|++|||+|+|++|++++|+++.+|+.+|++++++++|+++++++||+.
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~   76 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATE   76 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSE
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcE
Confidence            357899999999999999988899999999999999999999999999999889999999999999999999874

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.6e-15  Score=116.35  Aligned_cols=75  Identities=28%  Similarity=0.301  Sum_probs=70.9

Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +|+++||++++++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +||+++++++|.++++++|++.
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~   76 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHE   76 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSE
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccccCccc
Confidence            5889999999999999999988899999999999997 9999999999999999 8999999999999999999974

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.55  E-value=4e-15  Score=115.59  Aligned_cols=75  Identities=55%  Similarity=0.961  Sum_probs=71.6

Q ss_pred             ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      .+++|+.+.|++.|+|+++.+..++++|++|+|+|+|++|++++|+++.+|+.+||+++.+++|+++++++||+.
T Consensus         3 P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~   77 (176)
T d1d1ta2           3 PPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATE   77 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSE
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcE
Confidence            468899999999999999989999999999999999999999999999999889999999999999999999985

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.55  E-value=5.3e-15  Score=114.70  Aligned_cols=75  Identities=55%  Similarity=0.886  Sum_probs=71.3

Q ss_pred             ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++++||.+.|++.|+|+++.+.+++++|++|+|+|+|++|++++|+++.+|+++|++++.+++|+++++++|++.
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~   76 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATD   76 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSE
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCc
Confidence            467899999999999999989999999999999999999999999999999989999999999999999999974

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=2.5e-15  Score=116.70  Aligned_cols=75  Identities=24%  Similarity=0.191  Sum_probs=71.0

Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +|+++||++++++.|||+++.+..++++||+|||+|+ |.+|++++|+|+.+|+ +|++++++++|.++++++|++.
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~lGa~~   76 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQ   76 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhcCCeE
Confidence            5889999999999999999988889999999999976 8899999999999999 9999999999999999999974

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=3.1e-15  Score=99.78  Aligned_cols=73  Identities=16%  Similarity=0.149  Sum_probs=66.4

Q ss_pred             CChhhhhhcccccchhhhhhh---hcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          167 APLDKVCLLGCGVPTGLGAVW---NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~---~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      +|+++|+.++++..|||.+++   +....+++++|||+|+ |.+|.+++|+++.+|+ +|+++.++++|.++++++||
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~-~Vi~~t~s~~k~~~~~~lGA   77 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGA   77 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHHCCC
Confidence            578999999999999987654   4566789999999987 9999999999999999 89999999999999999997

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.52  E-value=1.2e-14  Score=111.55  Aligned_cols=74  Identities=26%  Similarity=0.363  Sum_probs=69.4

Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++++++|++++++.|||+++ +..++++|++|+|+|+|++|++++|++|.+|+ +|++++++++|+++++++|++.
T Consensus         1 v~f~~aA~l~ca~~Ta~~al-~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~~Ga~~   74 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGL-KQTNARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARKLGASL   74 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhccCccc
Confidence            47899999999999999987 56889999999999999999999999999998 9999999999999999999974

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.51  E-value=6e-15  Score=114.04  Aligned_cols=74  Identities=26%  Similarity=0.276  Sum_probs=69.1

Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++++||++++++.|||+++. ..++++|++|||+|+ |++|++++|+||.+|+ +|++++++++|.+.++++|++.
T Consensus         1 ls~eeAA~l~~~~~TA~~al~-~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~lGa~~   75 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLALK-RAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEE   75 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHHH-HTTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSE
T ss_pred             CCHHHHHHHHHHHHHHHHHHH-HhCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccccccce
Confidence            578999999999999999874 589999999999987 9999999999999999 8999999999999999999974

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=1.8e-14  Score=110.93  Aligned_cols=73  Identities=26%  Similarity=0.280  Sum_probs=67.0

Q ss_pred             ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +.+.||.+.++..|+|+++ +..++++|++|+|+|+|++|++++|++|.+|+ +||+++++++|+++++++||+.
T Consensus         2 p~e~AApl~cag~Ta~~al-~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~lGa~~   74 (168)
T d1piwa2           2 PSHLAAPLLCGGLTVYSPL-VRNGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGADH   74 (168)
T ss_dssp             CHHHHGGGGTHHHHHHHHH-HHTTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSE
T ss_pred             CHHHHHHHHHHHHHHHHHH-HHhCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhccCCcE
Confidence            3466889999999999987 56789999999999999999999999999999 8999999999999999999974

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.48  E-value=2.6e-14  Score=110.71  Aligned_cols=75  Identities=33%  Similarity=0.475  Sum_probs=69.9

Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++++|+.++.++.|+|+++ +.+++++|++|+|+|+|++|++++|++|.+|+++|++++++++|+++++++||+.
T Consensus         1 ip~e~A~~l~~~~~ta~~a~-~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~   75 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATD   75 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHH-HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccc
Confidence            46789999999999999986 6689999999999999999999999999999988999999999999999999863

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.48  E-value=4.8e-14  Score=109.16  Aligned_cols=74  Identities=54%  Similarity=0.901  Sum_probs=70.4

Q ss_pred             hhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++||.++|++.|+|+++.+..++++||+|||+|+|++|++++++++.+|+.+|++++++++|+++++++|++.
T Consensus         3 le~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~   76 (176)
T d2jhfa2           3 LEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE   76 (176)
T ss_dssp             HHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSE
T ss_pred             HHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCee
Confidence            56899999999999999999999999999999999999999999999999889999999999999999999874

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=3e-14  Score=109.60  Aligned_cols=75  Identities=27%  Similarity=0.279  Sum_probs=68.0

Q ss_pred             CCChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +.+++.+|.+.|+..|+|+++ +..++++|++|+|+|+|++|++++|+||.+|+ ++|+++.+++|+++++++|+|.
T Consensus         3 ~~~~a~~Apl~Cag~Tay~al-~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~lGad~   77 (168)
T d1uufa2           3 QEQLAAVAPLLCAGITTYSPL-RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADE   77 (168)
T ss_dssp             GGGHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSE
T ss_pred             cccHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhccCCcE
Confidence            346678888999999999987 67899999999999999999999999999999 7788999999999999999984

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.47  E-value=3.6e-14  Score=110.49  Aligned_cols=74  Identities=26%  Similarity=0.244  Sum_probs=69.0

Q ss_pred             hhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +..+|.+.++..|||+++.+..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++||+.
T Consensus         3 ~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~   76 (182)
T d1vj0a2           3 LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADL   76 (182)
T ss_dssp             HHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSE
T ss_pred             HHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceE
Confidence            45678889999999999988889999999999999999999999999999988999999999999999999974

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.46  E-value=6.7e-14  Score=108.25  Aligned_cols=75  Identities=37%  Similarity=0.589  Sum_probs=70.1

Q ss_pred             ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      .++.++++++++.|||+++++..++++|++|+|+|+|++|++++|+++.+|+++|++++.+++|+++++++|++.
T Consensus         2 P~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~   76 (174)
T d1f8fa2           2 PIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATH   76 (174)
T ss_dssp             CGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSE
T ss_pred             CHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeE
Confidence            356789999999999999999999999999999999999999999999999988889999999999999999873

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.46  E-value=6.9e-14  Score=108.04  Aligned_cols=75  Identities=60%  Similarity=1.003  Sum_probs=70.9

Q ss_pred             ChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++++||++.|++.|+|+++.+.+++++|++|+|+|+|++|++++++++..|+.+|++++++++|+++++++|||.
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~   76 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATD   76 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCE
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcE
Confidence            367899999999999999989999999999999999999999999999999989999999999999999999974

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.45  E-value=5.8e-14  Score=107.63  Aligned_cols=74  Identities=26%  Similarity=0.401  Sum_probs=69.4

Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +|+++||++++++.|||+++ +..++++|++|||+|+|++|++++++++..|+ +|++++++++|+++++++|++.
T Consensus         1 ls~eeAA~l~~~~~Ta~~al-~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~~Ga~~   74 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKAL-KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADL   74 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhhcCcce
Confidence            57899999999999999976 56789999999999999999999999999999 8999999999999999999975

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.44  E-value=2.6e-14  Score=110.85  Aligned_cols=75  Identities=17%  Similarity=0.042  Sum_probs=68.7

Q ss_pred             CChhhhhhcccccchhhhhh---hhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          167 APLDKVCLLGCGVPTGLGAV---WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~---~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +|+++||++++++.|||+++   ++....++|++|||+|+ |.+|.+++|+|+.+|+ +|+++.++++|.++++++|++.
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~lGa~~   79 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKE   79 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhcccce
Confidence            58899999999999999654   45678899999999987 9999999999999999 8999999999999999999985

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.41  E-value=8.3e-14  Score=108.25  Aligned_cols=72  Identities=21%  Similarity=0.256  Sum_probs=67.5

Q ss_pred             hhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +|||+++++++|||+++++..++++|++|||+|+ |++|++++|+|+.+|+ +++++++++++.+.++++|++.
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~~Ga~~   73 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRLGVEY   73 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTTCCSE
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeecccccccccccccccc
Confidence            4789999999999999999999999999999986 9999999999999999 8999989999999999999874

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.38  E-value=4.7e-13  Score=102.80  Aligned_cols=75  Identities=25%  Similarity=0.318  Sum_probs=69.7

Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +|+.+||++++++.|||+++ +..++++|++|+|+|+ |++|++++|+++++|+.+|++++.+++|+++++++|++.
T Consensus         1 l~~~eAA~l~c~~~Ta~~al-~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~   76 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADY   76 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCce
Confidence            57899999999999999976 6688999999999996 999999999999999879999999999999999999863

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.36  E-value=6.2e-13  Score=102.45  Aligned_cols=74  Identities=26%  Similarity=0.280  Sum_probs=68.1

Q ss_pred             hhhhhhcccccchhhhhhhhcC-CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          169 LDKVCLLGCGVPTGLGAVWNTA-KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~-~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +.++|++++++.|||+++.+.. .++||++|||+|+|++|++++|+++.+|+.+|++++++++|+++++++|++.
T Consensus         6 l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~   80 (172)
T d1h2ba2           6 LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADH   80 (172)
T ss_dssp             HHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSE
T ss_pred             HHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccce
Confidence            5688999999999999987755 4899999999999999999999999999889999999999999999999874

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=5.5e-13  Score=102.59  Aligned_cols=74  Identities=24%  Similarity=0.344  Sum_probs=66.5

Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +|+++||++. ++.++|+++ ++.++++|++|+|+|+|++|++++|+++.+|+++|++++++++|+++++++||+.
T Consensus         1 vS~e~Aal~e-pla~a~~a~-~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~   74 (171)
T d1pl8a2           1 VTFEEGALIE-PLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADL   74 (171)
T ss_dssp             SCHHHHHHHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSE
T ss_pred             CCHHHHHHHH-HHHHHHHHH-HHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcc
Confidence            4678888663 677899975 6678999999999999999999999999999989999999999999999999974

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.35  E-value=6.5e-13  Score=101.94  Aligned_cols=73  Identities=32%  Similarity=0.408  Sum_probs=65.3

Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +|+++||++. ++.++|+++ +..++++|++|+|+|+|++|++++|+++.+|+ +|++++++++|+++++++|++.
T Consensus         1 VS~e~Aal~e-Pla~a~~a~-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~ga~~   73 (170)
T d1e3ja2           1 VSLEEGALLE-PLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADV   73 (170)
T ss_dssp             SCHHHHHTHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSE
T ss_pred             CCHHHHHHHH-HHHHHHHHH-HHhCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHcCCcE
Confidence            4778888763 677899975 67789999999999999999999999999999 9999999999999999999863

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.35  E-value=7.5e-13  Score=102.88  Aligned_cols=69  Identities=23%  Similarity=0.199  Sum_probs=64.4

Q ss_pred             hhcccccchhhhhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          173 CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       173 a~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +++.++++|||+++.+..++++||+|||+|+ |.+|++++|++|.+|+ +||+++++++|.++++++|++.
T Consensus         8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~Ga~~   77 (182)
T d1v3va2           8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDA   77 (182)
T ss_dssp             TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSE
T ss_pred             HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHhhhhhh
Confidence            4577788999999999999999999999987 8999999999999999 9999999999999999999874

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.35  E-value=4.7e-13  Score=104.77  Aligned_cols=75  Identities=15%  Similarity=0.067  Sum_probs=65.6

Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCCCEEEEE-cC-CHHHHHHHHHHHHcCCCEEEEEcCCh----hHHHHHHHhcc
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF-GL-GTVGLAVAEGAKAAGASRVIGIDIDP----KKFDRVLNALA  240 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~-G~-g~~G~~a~~~a~~~G~~~vi~~~~~~----~~~~~~~~~Ga  240 (243)
                      +|+++||+++++++|||+++.+..++++|++++|+ |+ |.+|++++|+||.+|+ +||++.+++    ++.++++++|+
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGa   79 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGA   79 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTC
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccc
Confidence            58899999999999999999999999999998887 55 9999999999999999 888876543    45677889998


Q ss_pred             cC
Q 026087          241 MS  242 (243)
Q Consensus       241 ~~  242 (243)
                      |.
T Consensus        80 d~   81 (189)
T d1gu7a2          80 TQ   81 (189)
T ss_dssp             SE
T ss_pred             cE
Confidence            75

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=4e-13  Score=104.15  Aligned_cols=75  Identities=16%  Similarity=0.138  Sum_probs=65.5

Q ss_pred             CChhhhhhcccccchhhhhhh---hcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          167 APLDKVCLLGCGVPTGLGAVW---NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~---~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +|+.+|+.++++..|||++++   +....+++++|||+|+ |++|.+++|+||.+|+ +||+++++++|.+.++++|+|.
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~~lGad~   79 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGASR   79 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTEEE
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHHhhcccc
Confidence            578999999999999997654   3344556679999987 9999999999999999 8999999999999999999985

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.30  E-value=2.7e-12  Score=100.91  Aligned_cols=72  Identities=36%  Similarity=0.406  Sum_probs=66.6

Q ss_pred             hhhhhcccccchhhhhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++.+.|...+.|+|+++ +.+++++|++|||+|+|++|++++++++.+|+.+|++++.+++|+++++++|++.
T Consensus         2 ~d~~~l~d~~~ta~~a~-~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~   73 (195)
T d1kola2           2 RDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEI   73 (195)
T ss_dssp             HHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEE
T ss_pred             chHHhcccHHHHHHHHH-HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccE
Confidence            46677888999999986 6789999999999999999999999999999999999999999999999999874

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=9.8e-12  Score=96.91  Aligned_cols=75  Identities=21%  Similarity=0.137  Sum_probs=61.3

Q ss_pred             CChhhhhhcccccchhhhhhhhcCCCCCC--CEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHH-HHHHHhcccC
Q 026087          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPG--SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF-DRVLNALAMS  242 (243)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g--~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~-~~~~~~Ga~~  242 (243)
                      +|+.+.+ ++++..|||++++...++++|  ++|||+|+ |++|++++|+||.+|+++|+++++++++. ++.+++|+|.
T Consensus         2 ~~~~~ga-lg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~   80 (187)
T d1vj1a2           2 LSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDA   80 (187)
T ss_dssp             GGGGGTT-TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSE
T ss_pred             ccHHHHH-hhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceE
Confidence            4555543 667899999999999999987  88999986 99999999999999997788777666554 5556899875

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.12  E-value=1.4e-11  Score=94.28  Aligned_cols=64  Identities=17%  Similarity=0.023  Sum_probs=54.9

Q ss_pred             ccchhh---hhhhhcCCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          178 GVPTGL---GAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       178 ~~~ta~---~~~~~~~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      +..|||   +++.+....+++++|||+|+ |.+|++++|+||.+|+ +||++.++++|.++++++|++.
T Consensus         4 aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~lGad~   71 (167)
T d1tt7a2           4 AGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGASE   71 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTCSE
T ss_pred             hHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhhcccc
Confidence            345665   44555666778889999987 9999999999999999 8999999999999999999985

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.63  E-value=5.2e-05  Score=57.34  Aligned_cols=47  Identities=32%  Similarity=0.434  Sum_probs=43.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +..+|+|+|+|..|+.|+..|+.+|+ .|.++|.+.++++.++++|+.
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~~~   74 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGK   74 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCE
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhhcc
Confidence            45789999999999999999999999 999999999999999998864

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.38  E-value=0.00023  Score=53.01  Aligned_cols=46  Identities=26%  Similarity=0.330  Sum_probs=42.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      +..+|+|+|+|..|+.|++.|+.+|+ .|.++|.+.++++.+++...
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~   76 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFG   76 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhc
Confidence            45789999999999999999999999 99999999999998887654

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.89  E-value=0.0011  Score=49.21  Aligned_cols=52  Identities=17%  Similarity=0.142  Sum_probs=44.0

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      +++.....++++|||+|+|+.+.+++..++..|+++|..+.++.+|.+.+.+
T Consensus         8 ~l~~~~~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~   59 (167)
T d1npya1           8 LIEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAA   59 (167)
T ss_dssp             HHHHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHH
T ss_pred             HHHHcCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHH
Confidence            3455666678899999999999999999999999889999999988776643

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.65  E-value=0.0021  Score=48.49  Aligned_cols=47  Identities=21%  Similarity=0.187  Sum_probs=40.4

Q ss_pred             CCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          190 AKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       190 ~~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      ..--+|+++||+|+ |.+|...+..+...|+ +|+.++++.++.+.+.+
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~   65 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAAD   65 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHH
Confidence            33558899999997 9999999999999999 89999999988766643

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.56  E-value=0.0029  Score=48.37  Aligned_cols=49  Identities=31%  Similarity=0.357  Sum_probs=44.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      -.|.+|+|.|-|.+|..++..+...|+ +|++.+.+.++++...++|++.
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~Ga-kvvv~d~d~~~~~~~~~~g~~~   73 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHTA   73 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEecchHHHHHHHHhhcccc
Confidence            478999999999999999999999999 9999999999999888888653

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.48  E-value=0.0049  Score=45.54  Aligned_cols=51  Identities=12%  Similarity=0.113  Sum_probs=41.6

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      +....-..+|++|||+|+|+.+.+++..+..+|+ +|+.+.|+.+|.+.+.+
T Consensus         9 l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~nRt~~ka~~l~~   59 (170)
T d1nyta1           9 LERLSFIRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAK   59 (170)
T ss_dssp             HHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHH
T ss_pred             HHHcCCCCCCCEEEEECCcHHHHHHHHHhcccce-EEEeccchHHHHHHHHH
Confidence            3333335678999999999999999999999999 79999999988766654

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.0036  Score=49.77  Aligned_cols=43  Identities=23%  Similarity=0.271  Sum_probs=38.4

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      -+|+++||+|+ +++|.+.+..+...|+ +|+.+++++++++.+.
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~   55 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVV   55 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            46899999998 8999999999999999 9999999999887664

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.20  E-value=0.0067  Score=44.42  Aligned_cols=51  Identities=18%  Similarity=0.105  Sum_probs=42.2

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHH-HHHHhccc
Q 026087          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD-RVLNALAM  241 (243)
Q Consensus       191 ~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~-~~~~~Ga~  241 (243)
                      .--.+.+|||+|+|.+|.+.+..+...|++++.++.++.+|.+ +++++|..
T Consensus        20 ~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~   71 (159)
T d1gpja2          20 GSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGE   71 (159)
T ss_dssp             SCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCE
T ss_pred             CCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcc
Confidence            3457789999999999999999999999988999999887754 55666653

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.0025  Score=42.25  Aligned_cols=35  Identities=29%  Similarity=0.352  Sum_probs=31.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      +|++|+|+|.|..|+.+++++...|+ +|+++|.++
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~~   38 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRM   38 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESSS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCCc
Confidence            46789999999999999999999999 899998754

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.0094  Score=44.44  Aligned_cols=43  Identities=16%  Similarity=0.291  Sum_probs=37.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      -.+++|||+|+|+.+.+++..+..+|+++++.+.++.++.+.+
T Consensus        16 l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~   58 (182)
T d1vi2a1          16 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKA   58 (182)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHH
Confidence            4678999999999999999999999998999999987766544

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.04  E-value=0.0023  Score=45.15  Aligned_cols=44  Identities=25%  Similarity=0.411  Sum_probs=39.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhccc
Q 026087          197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAM  241 (243)
Q Consensus       197 ~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~  241 (243)
                      +++|.|.|.+|...++.+...|. +|++++.++++.+.+++.|..
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~~~~~   45 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATH   45 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTTTCSE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHHhCCc
Confidence            57888999999999999999999 899999999999988877653

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=95.98  E-value=0.0074  Score=48.36  Aligned_cols=42  Identities=12%  Similarity=0.105  Sum_probs=36.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      -+|+++||.|+ +++|.+.+..+...|+ +|+.+++++++++.+
T Consensus        23 l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~   65 (294)
T d1w6ua_          23 FQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKAT   65 (294)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHH
Confidence            36799999987 9999999999999999 999999998876543

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.76  E-value=0.012  Score=41.24  Aligned_cols=43  Identities=26%  Similarity=0.414  Sum_probs=37.8

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH-hcc
Q 026087          197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN-ALA  240 (243)
Q Consensus       197 ~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~-~Ga  240 (243)
                      +|+|.|.|.+|...++.+...|. .|++++.++++.+.+.+ ++.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~~~   45 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDA   45 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhhhh
Confidence            58899999999999999999999 89999999999887764 453

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.0081  Score=41.22  Aligned_cols=38  Identities=29%  Similarity=0.475  Sum_probs=32.2

Q ss_pred             CCCC-CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          192 VEPG-SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       192 ~~~g-~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      +.++ .+|.|+|+|.+|.+.++.|+.+|+ ++++++.+++
T Consensus         7 ~~~~~~kigIlGgGQL~rMla~aA~~lG~-~v~v~d~~~~   45 (111)
T d1kjqa2           7 LRPAATRVMLLGSGELGKEVAIECQRLGV-EVIAVDRYAD   45 (111)
T ss_dssp             TSTTCCEEEEESCSHHHHHHHHHHHTTTC-EEEEEESSTT
T ss_pred             CCCCCCEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcCCCC
Confidence            3444 469999999999999999999999 8999986653

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.012  Score=47.54  Aligned_cols=44  Identities=16%  Similarity=0.222  Sum_probs=38.2

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       191 ~~~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      +.-+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+
T Consensus         8 g~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~   52 (297)
T d1yxma1           8 GLLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSA   52 (297)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            3457899999987 8999999999999999 899999998887554

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=95.31  E-value=0.022  Score=41.98  Aligned_cols=46  Identities=15%  Similarity=0.125  Sum_probs=37.5

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       191 ~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      ...++++|+|+|+|+.+.+++..+...+ .+|+.+.|+.++.+.+.+
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~aL~~~~-~~i~I~nR~~~~a~~l~~   59 (171)
T d1p77a1          14 WLRPNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANRTFSKTKELAE   59 (171)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHcccC-ceeeeccchHHHHHHHHH
Confidence            3457889999999999999888877755 499999999988766643

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.25  E-value=0.0081  Score=38.47  Aligned_cols=34  Identities=24%  Similarity=0.440  Sum_probs=30.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      ++|.|+|+|.+|.+.++.++.+|+ ++++++.+++
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~-~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGI-AVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTE-EEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-EEEEEcCCCC
Confidence            478999999999999999999999 8999876543

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=94.96  E-value=0.018  Score=42.90  Aligned_cols=37  Identities=35%  Similarity=0.384  Sum_probs=33.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      ...+++|+|+|+|+.|+.|+..+..+|. +|+.++.++
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~   76 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHS   76 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred             CCCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccC
Confidence            4556899999999999999999999999 999998765

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.049  Score=39.71  Aligned_cols=49  Identities=31%  Similarity=0.455  Sum_probs=40.4

Q ss_pred             hhhcCC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHH
Q 026087          186 VWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRV  235 (243)
Q Consensus       186 ~~~~~~-~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~  235 (243)
                      +.+..+ .-.|++++|.|-|-+|...++.++.+|+ +|++++.++.+.-.+
T Consensus        14 ~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~-~V~v~e~dp~~al~A   63 (163)
T d1li4a1          14 IKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGA-RVIITEIDPINALQA   63 (163)
T ss_dssp             HHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHH
T ss_pred             HHHHhCceecCCEEEEeccccccHHHHHHHHhCCC-eeEeeecccchhHHh
Confidence            334333 5689999999999999999999999999 999999988664333

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.69  E-value=0.041  Score=37.63  Aligned_cols=44  Identities=23%  Similarity=0.221  Sum_probs=36.7

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      +.......++++|+|+|+|.+|+=.+..++.+|. +|..+.+.+.
T Consensus        13 ~~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~-~vt~i~~~~~   56 (121)
T d1mo9a2          13 LVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGR-RTVMLVRTEP   56 (121)
T ss_dssp             HHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCT
T ss_pred             HHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcch-hheEeeccch
Confidence            3345566788999999999999999999999999 8888887653

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=94.54  E-value=0.046  Score=42.25  Aligned_cols=49  Identities=24%  Similarity=0.330  Sum_probs=41.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH-Hhccc
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL-NALAM  241 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~-~~Ga~  241 (243)
                      --.|.+|+|.|-|.+|..+++++..+|+ ++++++.+..+++.+. +.|++
T Consensus        36 ~l~g~~v~IqG~GnVG~~~a~~L~~~Ga-kvv~~d~~~~~~~~~~~~~g~~   85 (230)
T d1leha1          36 SLEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGAD   85 (230)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEeecccHHHHHHHHHhcCCc
Confidence            3578999999999999999999999999 9999998888876655 35544

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.54  E-value=0.037  Score=42.16  Aligned_cols=51  Identities=20%  Similarity=0.247  Sum_probs=42.0

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~-~~vi~~~~~~~~~~~~~~  237 (243)
                      +....++++|++||-+|+|+ |..++.+++..|- .+|++++.+++..+.+++
T Consensus        67 ~l~~l~l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~  118 (213)
T d1dl5a1          67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR  118 (213)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred             HHHhhhccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhh
Confidence            45677899999999999876 8888889988763 389999999988777764

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=94.12  E-value=0.03  Score=44.24  Aligned_cols=37  Identities=24%  Similarity=0.315  Sum_probs=32.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      ....++|+|+|+|..|+.++..++..|. +|.+++.++
T Consensus        27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~~   63 (370)
T d2iida1          27 TSNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASE   63 (370)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            4556799999999999999999999999 899998654

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.10  E-value=0.04  Score=43.41  Aligned_cols=40  Identities=20%  Similarity=0.224  Sum_probs=32.7

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC-hhHHH
Q 026087          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID-PKKFD  233 (243)
Q Consensus       193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~-~~~~~  233 (243)
                      -+|+++||.|+ +++|.+.++.+...|+ +|+.++++ +++++
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~   57 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAE   57 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHH
Confidence            35799999987 9999999999999999 88888765 44433

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.07  E-value=0.052  Score=39.91  Aligned_cols=49  Identities=14%  Similarity=0.118  Sum_probs=36.1

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      +.+...--++++|||+|+|+++.+++..+...  .+|..+.|+.+|.+.+.
T Consensus         9 l~~~~~~~~~k~vlIlGaGG~arai~~aL~~~--~~i~I~nR~~~ka~~l~   57 (177)
T d1nvta1           9 LEEEIGRVKDKNIVIYGAGGAARAVAFELAKD--NNIIIANRTVEKAEALA   57 (177)
T ss_dssp             HHHHHCCCCSCEEEEECCSHHHHHHHHHHTSS--SEEEEECSSHHHHHHHH
T ss_pred             HHHhCCCcCCCEEEEECCcHHHHHHHHHHccc--cceeeehhhhhHHHHHH
Confidence            33333345788999999999999877666544  48999999988876553

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.03  E-value=0.042  Score=42.11  Aligned_cols=39  Identities=23%  Similarity=0.219  Sum_probs=33.9

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       191 ~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      ..+.+++|+|+|+|+.|+.++..++.+|. +|+.++.+++
T Consensus        45 ~~~~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~~~~   83 (233)
T d1djqa3          45 QTKNKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAEK   83 (233)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             cccCCceEEEEcccHHHHHHHHHHHHhcc-ceeeEeeccc
Confidence            34577899999999999999999999999 8999986654

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=93.93  E-value=0.031  Score=41.00  Aligned_cols=49  Identities=22%  Similarity=0.385  Sum_probs=38.8

Q ss_pred             hhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087          187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       187 ~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      +....+.||++||.+|+|. |..+..+|+ .|+ +|+++|.+++-++.+++.
T Consensus        13 ~~~l~~~~~~rvLd~GCG~-G~~a~~la~-~G~-~V~gvD~S~~~i~~a~~~   61 (201)
T d1pjza_          13 WSSLNVVPGARVLVPLCGK-SQDMSWLSG-QGY-HVVGAELSEAAVERYFTE   61 (201)
T ss_dssp             HHHHCCCTTCEEEETTTCC-SHHHHHHHH-HCC-EEEEEEECHHHHHHHHHH
T ss_pred             HHHcCCCCCCEEEEecCcC-CHHHHHHHH-cCC-ceEeecccHHHHHHHHHH
Confidence            4456788999999998753 456667775 599 999999999988888763

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.78  E-value=0.056  Score=36.77  Aligned_cols=35  Identities=17%  Similarity=0.272  Sum_probs=31.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      .++++|+|+|.+|+=+++.+..+|. +|..+.+.++
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~-~Vtlve~~~~   56 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGT-KVTILEGAGE   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             CCeEEEECCCccceeeeeeeccccc-EEEEEEecce
Confidence            4789999999999999999999999 8988887664

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.78  E-value=0.063  Score=36.99  Aligned_cols=40  Identities=33%  Similarity=0.350  Sum_probs=33.5

Q ss_pred             cCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       189 ~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      ......+++|+|+|+|.+|+-+++.+..+|. +|..+++.+
T Consensus        24 ~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~-~Vtlie~~~   63 (123)
T d1nhpa2          24 KTVDPEVNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILD   63 (123)
T ss_dssp             HHTCTTCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             HhhccCCCEEEEECChHHHHHHHHHhhccce-EEEEEEecC
Confidence            3334567899999999999999999999999 888887655

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=93.76  E-value=0.057  Score=36.95  Aligned_cols=37  Identities=11%  Similarity=0.179  Sum_probs=32.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      ++..++|+|+|+|.+|+=.++.++.+|. +|..+.+.+
T Consensus        19 l~~p~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~   55 (117)
T d1onfa2          19 IKESKKIGIVGSGYIAVELINVIKRLGI-DSYIFARGN   55 (117)
T ss_dssp             CCCCSEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSS
T ss_pred             cCCCCEEEEECCchHHHHHHHHHHhccc-cceeeehhc
Confidence            4456899999999999999999999999 899998755

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=93.50  E-value=0.071  Score=36.66  Aligned_cols=38  Identities=32%  Similarity=0.588  Sum_probs=33.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      ++++++++|+|+|.+|.=.+..++.+|. +|..++++++
T Consensus        27 ~~~~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~~   64 (121)
T d1d7ya2          27 LRPQSRLLIVGGGVIGLELAATARTAGV-HVSLVETQPR   64 (121)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             hhcCCeEEEECcchhHHHHHHHhhcccc-eEEEEeeccc
Confidence            4677999999999999999999999999 8988887663

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.27  E-value=0.062  Score=36.36  Aligned_cols=35  Identities=23%  Similarity=0.096  Sum_probs=30.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .|.+|||+|+|.+|..-+..+...|+ +|++++...
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~~~   45 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTF   45 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            47899999999999999999999999 788776443

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.02  E-value=0.096  Score=36.55  Aligned_cols=38  Identities=29%  Similarity=0.354  Sum_probs=33.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      ++++++++|+|+|.+|+=++..++.+|. +|..+++.+.
T Consensus        32 ~~~~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~~~   69 (133)
T d1q1ra2          32 LIADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAAR   69 (133)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             hccCCEEEEECCchHHHHHHHHHHhhCc-ceeeeeeccc
Confidence            4667899999999999999999999999 8999887653

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=92.91  E-value=0.085  Score=35.84  Aligned_cols=34  Identities=24%  Similarity=0.303  Sum_probs=30.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .++++|+|+|.+|+=+++.++.+|. +|..+.+.+
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGA-KTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhcccc-EEEEEeecc
Confidence            3689999999999999999999999 898888766

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.86  E-value=0.064  Score=40.92  Aligned_cols=49  Identities=20%  Similarity=0.266  Sum_probs=38.2

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      +....++++|++||.+|+|+ |..++.+++..|. +|++++.+++-.+.++
T Consensus        70 ml~~L~l~~g~~VLeIGsGs-GY~taila~l~g~-~V~~ie~~~~l~~~a~  118 (215)
T d1jg1a_          70 MLEIANLKPGMNILEVGTGS-GWNAALISEIVKT-DVYTIERIPELVEFAK  118 (215)
T ss_dssp             HHHHHTCCTTCCEEEECCTT-SHHHHHHHHHHCS-CEEEEESCHHHHHHHH
T ss_pred             HHHhhccCccceEEEecCCC-ChhHHHHHHhhCc-eeEEEeccHHHHHHHH
Confidence            45677899999999998753 6777778877776 7999999987655543

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.84  E-value=0.096  Score=35.77  Aligned_cols=35  Identities=23%  Similarity=0.293  Sum_probs=30.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      ..++++|+|+|.+|+=.+++++.+|. +|..+.+++
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~G~-~Vtiv~~~~   55 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARLGA-EVTVLEAMD   55 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             CCCeEEEECCChHHHHHHHHHHHcCC-ceEEEEeec
Confidence            34889999999999999999999999 788887655

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.80  E-value=0.098  Score=35.90  Aligned_cols=34  Identities=21%  Similarity=0.440  Sum_probs=30.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .++++|+|+|.+|+=.++++..+|. +|..+.+.+
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~~~   56 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEFQP   56 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCc-ceeEEEecc
Confidence            3789999999999999999999999 898887765

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=92.75  E-value=0.071  Score=40.11  Aligned_cols=36  Identities=31%  Similarity=0.431  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      .|.+|.|+|.|.+|...+++++.+|+ +|++.+...+
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~-~V~~~d~~~~   77 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRN   77 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             cCCeEEEecccccchhHHHhHhhhcc-cccccCcccc
Confidence            47899999999999999999999999 9999986543

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=92.73  E-value=0.11  Score=40.61  Aligned_cols=51  Identities=14%  Similarity=0.250  Sum_probs=38.3

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~-~~vi~~~~~~~~~~~~~~  237 (243)
                      +....+++||++||=.|+|+ |.++..+|+..|. .+|++++.+++..+.+++
T Consensus        77 Ii~~l~i~pG~rVLEiG~Gs-G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~  128 (250)
T d1yb2a1          77 IIMRCGLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMD  128 (250)
T ss_dssp             ----CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHH
T ss_pred             HHHHcCCCCcCEEEEeeeeC-cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH
Confidence            45678899999999998755 6667778887653 389999999998888765

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=92.72  E-value=0.11  Score=39.70  Aligned_cols=50  Identities=20%  Similarity=0.332  Sum_probs=39.9

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      ++....+++|++||-+|+| .|..++.+++. +. +|++++.+++..+.+++.
T Consensus        62 ml~~L~l~~g~~VLdIG~G-sGy~ta~La~l-~~-~V~aiE~~~~~~~~A~~~  111 (224)
T d1vbfa_          62 MLDELDLHKGQKVLEIGTG-IGYYTALIAEI-VD-KVVSVEINEKMYNYASKL  111 (224)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEEESCHHHHHHHHHH
T ss_pred             HHHHhhhcccceEEEecCC-CCHHHHHHHHH-hc-ccccccccHHHHHHHHHH
Confidence            4567789999999999986 46677777775 44 899999999988877654

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.49  E-value=0.1  Score=35.30  Aligned_cols=35  Identities=23%  Similarity=0.355  Sum_probs=30.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      .++++|+|+|.+|+=+++.++.+|. +|..+.+.++
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~~~~   55 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGA-QVSVVEARER   55 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhccc-ceEEEeeecc
Confidence            3789999999999999999999999 8998877653

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.38  E-value=0.13  Score=40.94  Aligned_cols=50  Identities=16%  Similarity=0.336  Sum_probs=40.9

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      +..+.++++|++||=+|+|- |..++.+|+..|+ +|++++.+++-.+.+++
T Consensus        54 ~~~~l~l~~G~~VLDiGCG~-G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~  103 (285)
T d1kpga_          54 ALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQ  103 (285)
T ss_dssp             HHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEecCcc-hHHHHHHHhcCCc-ceEEEeccHHHHHHHHH
Confidence            56788899999999998753 4556778888999 99999999987776654

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.24  E-value=0.11  Score=35.79  Aligned_cols=36  Identities=19%  Similarity=0.305  Sum_probs=31.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      +..++++|+|+|.+|+=.+++.+.+|. +|..+.+.+
T Consensus        24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~~~   59 (125)
T d1ojta2          24 EVPGKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEMMD   59 (125)
T ss_dssp             CCCSEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             ccCCeEEEECCCHHHHHHHHHhhcCCC-EEEEEEeec
Confidence            445899999999999999999999999 888887665

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=92.22  E-value=0.077  Score=39.90  Aligned_cols=35  Identities=34%  Similarity=0.446  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .|.+|.|+|.|.+|...+++++.+|+ +|++.+...
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~   78 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPYP   78 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             cceeeeeeecccccccccccccccce-eeeccCCcc
Confidence            46899999999999999999999999 999998654

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=92.14  E-value=0.1  Score=38.62  Aligned_cols=36  Identities=42%  Similarity=0.583  Sum_probs=32.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      -.|.+|.|+|.|.+|...+++++.+|+ +|++++++.
T Consensus        40 l~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~   75 (181)
T d1qp8a1          40 IQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTP   75 (181)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             ccCceEEEeccccccccceeeeecccc-ccccccccc
Confidence            357899999999999999999999999 999998765

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.12  E-value=0.084  Score=36.32  Aligned_cols=36  Identities=19%  Similarity=0.303  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      ..++++|+|+|.+|+=.+++++.+|. +|..+.++++
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~~~~   59 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEFASE   59 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTC-EEEEECSSSS
T ss_pred             cCCeEEEEccchHHHHHHHHHHhcCC-eEEEEEEccc
Confidence            45789999999999999999999999 8999987664

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.99  E-value=0.12  Score=35.56  Aligned_cols=33  Identities=15%  Similarity=0.152  Sum_probs=30.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      ++++|+|+|.+|+=.+..++.+|. +|..+.+++
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGS-KTSLMIRHD   55 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCc-EEEEEeecc
Confidence            789999999999999999999999 899998765

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.75  E-value=0.15  Score=36.44  Aligned_cols=37  Identities=27%  Similarity=0.271  Sum_probs=31.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .-+++|+|+|+|.+|.=++..+...|++.|+.+.+.+
T Consensus        43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            3457899999999999999999999998888876554

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.66  E-value=0.12  Score=41.24  Aligned_cols=44  Identities=27%  Similarity=0.453  Sum_probs=32.4

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~  231 (243)
                      +.+.....+|++||-+|+| .|++++.+|+ .|+++|++++.++.-
T Consensus        27 i~~~~~~~~~~~VLDiGcG-~G~lsl~aa~-~Ga~~V~aid~s~~~   70 (311)
T d2fyta1          27 IYQNPHIFKDKVVLDVGCG-TGILSMFAAK-AGAKKVLGVDQSEIL   70 (311)
T ss_dssp             HHHCGGGTTTCEEEEETCT-TSHHHHHHHH-TTCSEEEEEESSTHH
T ss_pred             HHhccccCCcCEEEEECCC-CCHHHHHHHH-cCCCEEEEEeCHHHH
Confidence            4444566789999999986 5566665555 577799999988753

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.56  E-value=0.092  Score=37.32  Aligned_cols=33  Identities=18%  Similarity=0.243  Sum_probs=29.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID  226 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~  226 (243)
                      -.|++|||+|+|.+|.--+..+...|+ +|++++
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVva   43 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVS   43 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEe
Confidence            467999999999999999999999999 888884

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=91.56  E-value=0.25  Score=35.73  Aligned_cols=39  Identities=41%  Similarity=0.580  Sum_probs=36.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~  231 (243)
                      .-.|++++|.|=|-+|...++-++.+|+ +|++++.++-+
T Consensus        20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga-~V~V~E~DPi~   58 (163)
T d1v8ba1          20 LISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPIC   58 (163)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHH
T ss_pred             eecCCEEEEecccccchhHHHHHHhCCC-EEEEEecCchh
Confidence            5789999999999999999999999999 99999998855

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=91.46  E-value=0.22  Score=32.61  Aligned_cols=49  Identities=24%  Similarity=0.271  Sum_probs=38.4

Q ss_pred             CCCCCEEEEEcCCHHHHHH-HHHHHHcCCCEEEEEcCCh-hHHHHHHHhccc
Q 026087          192 VEPGSIVAVFGLGTVGLAV-AEGAKAAGASRVIGIDIDP-KKFDRVLNALAM  241 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a-~~~a~~~G~~~vi~~~~~~-~~~~~~~~~Ga~  241 (243)
                      .+..+++.++|.|.+|..+ +++++..|+ .|.+.|... ...+.+++.|+.
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~~~L~~~Gi~   55 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVTQRLAQAGAK   55 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHHHHHHHTTCE
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhhhHHHHCCCe
Confidence            4556889999988888666 899999999 999999764 345677777764

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=91.36  E-value=0.13  Score=38.41  Aligned_cols=36  Identities=42%  Similarity=0.431  Sum_probs=32.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.+...
T Consensus        47 L~gktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~   82 (193)
T d1mx3a1          47 IRGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYL   82 (193)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTS
T ss_pred             eeCceEEEeccccccccceeeeecccc-ceeeccCcc
Confidence            467899999999999999999999999 999998653

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.33  E-value=0.21  Score=38.01  Aligned_cols=45  Identities=29%  Similarity=0.410  Sum_probs=35.7

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCChhHHHHHH
Q 026087          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       191 ~~~~g~~vlV~G~g~~G~~a~~~a~~~G-~~~vi~~~~~~~~~~~~~  236 (243)
                      .+++|++||-+|+|+ |..++.+|+..| ..+|++++.+++-.+.++
T Consensus        73 ~l~~g~~VLdiG~Gs-Gy~ta~la~l~~~~g~V~~ie~~~~l~~~a~  118 (224)
T d1i1na_          73 QLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSV  118 (224)
T ss_dssp             TSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred             ccCCCCeEEEecCCC-CHHHHHHHHHhCCCceEEEEcCCHHHHHHHH
Confidence            689999999998753 677777888766 348999999998776664

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=91.28  E-value=0.22  Score=38.99  Aligned_cols=51  Identities=20%  Similarity=0.223  Sum_probs=42.0

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~-~~vi~~~~~~~~~~~~~~  237 (243)
                      +....+++||++||=.|+|+ |.+++.+|+..|. .+|++++.+++.++.+++
T Consensus        95 Ii~~l~i~pG~~VLDiG~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~  146 (266)
T d1o54a_          95 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAES  146 (266)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEECCCCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Confidence            56788999999999998865 6777788888752 389999999998887754

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=91.19  E-value=0.14  Score=39.69  Aligned_cols=34  Identities=35%  Similarity=0.436  Sum_probs=31.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID  226 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~  226 (243)
                      --.|.+|+|.|-|.+|..+++++..+|+ +|++++
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Ga-kvv~vs   61 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWLEKMGA-KVIAVS   61 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEee
Confidence            3578999999999999999999999999 888876

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.05  E-value=0.15  Score=34.98  Aligned_cols=33  Identities=21%  Similarity=0.079  Sum_probs=28.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      .++++|+|+|.+|+=.+++++.+|. +|..+.++
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~   52 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGL-DVTVMVRS   52 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCC-eEEEEEec
Confidence            3679999999999999999999999 67777654

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=89.97  E-value=0.21  Score=38.43  Aligned_cols=35  Identities=31%  Similarity=0.461  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      ...+|+|+|+|++|..++..+..+|.+++..+|.+
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            34789999999999999999999999999999844

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=89.96  E-value=0.47  Score=30.55  Aligned_cols=44  Identities=18%  Similarity=0.288  Sum_probs=34.7

Q ss_pred             EEEEEcCCHHHHHH-HHHHHHcCCCEEEEEcCCh-hHHHHHHHhccc
Q 026087          197 IVAVFGLGTVGLAV-AEGAKAAGASRVIGIDIDP-KKFDRVLNALAM  241 (243)
Q Consensus       197 ~vlV~G~g~~G~~a-~~~a~~~G~~~vi~~~~~~-~~~~~~~~~Ga~  241 (243)
                      +|-++|-|++|..+ +++++.+|+ .|.+.|..+ +..+.|+++|+.
T Consensus         3 ~ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD~~~~~~t~~L~~~Gi~   48 (89)
T d1j6ua1           3 KIHFVGIGGIGMSAVALHEFSNGN-DVYGSNIEETERTAYLRKLGIP   48 (89)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHTTCC
T ss_pred             EEEEEeECHHHHHHHHHHHHhCCC-eEEEEeCCCChhHHHHHHCCCe
Confidence            56677887777654 688999999 999999877 456788888874

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.92  E-value=0.24  Score=33.75  Aligned_cols=37  Identities=27%  Similarity=0.290  Sum_probs=31.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      +.+++++|+|+|.+|+=.++.+..+|. +|..+.+++.
T Consensus        30 ~~~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~~   66 (122)
T d1xhca2          30 ENSGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRGAM   66 (122)
T ss_dssp             HHHSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSSSC
T ss_pred             hcCCcEEEECCcHHHHHHHHHhhcccc-eEEEEecccc
Confidence            345789999999999999999999999 8888887653

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.88  E-value=0.35  Score=35.58  Aligned_cols=38  Identities=37%  Similarity=0.412  Sum_probs=33.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~  231 (243)
                      -.|.++.|+|.|.+|...+.+++..|+ +|++.++..++
T Consensus        42 l~~k~vgiiG~G~IG~~va~~~~~fg~-~v~~~d~~~~~   79 (184)
T d1ygya1          42 IFGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPYVSP   79 (184)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCH
T ss_pred             ccceeeeeccccchhHHHHHHhhhccc-eEEeecCCCCh
Confidence            357899999999999999999999999 99999875543

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.87  E-value=0.16  Score=38.59  Aligned_cols=47  Identities=19%  Similarity=0.182  Sum_probs=36.9

Q ss_pred             hcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       188 ~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      .....+++.+||..|+|. |..+..+|+ .|+ +|+++|.+++-++.+++
T Consensus        39 ~~l~~~~~~rvLd~GCG~-G~~a~~LA~-~G~-~V~gvD~S~~ai~~a~~   85 (229)
T d2bzga1          39 TFLKGKSGLRVFFPLCGK-AVEMKWFAD-RGH-SVVGVEISELGIQEFFT   85 (229)
T ss_dssp             HHHTTCCSCEEEETTCTT-CTHHHHHHH-TTC-EEEEECSCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEeCCCC-cHHHHHHHh-CCC-cEEEEeCCHHHHHHHHH
Confidence            344578899999998865 566666665 699 99999999998877764

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.58  E-value=0.22  Score=39.58  Aligned_cols=33  Identities=27%  Similarity=0.365  Sum_probs=30.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID  226 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~  226 (243)
                      -.|.+|+|.|-|.+|..+++.+..+|+ +|++++
T Consensus        34 L~gktvaIqGfGnVG~~~A~~L~e~Ga-kvv~vs   66 (293)
T d1hwxa1          34 FGDKTFAVQGFGNVGLHSMRYLHRFGA-KCVAVG   66 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEE
Confidence            467899999999999999999999999 898885

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=89.45  E-value=0.29  Score=36.08  Aligned_cols=38  Identities=18%  Similarity=0.110  Sum_probs=33.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhH
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~  231 (243)
                      -.+.++.|+|.|.+|...++.++..|. +|++.++....
T Consensus        42 l~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~   79 (188)
T d2naca1          42 LEAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLP   79 (188)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCC
T ss_pred             ccccceeeccccccchhhhhhhhccCc-eEEEEeecccc
Confidence            357899999999999999999999999 89999875443

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=89.43  E-value=0.28  Score=34.58  Aligned_cols=44  Identities=20%  Similarity=0.217  Sum_probs=35.6

Q ss_pred             CEEEEEc-CCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcc
Q 026087          196 SIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALA  240 (243)
Q Consensus       196 ~~vlV~G-~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga  240 (243)
                      ++|.|+| .|.+|...+..++..|+ .|.+.+++++..+.....++
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~~~~~~~~~~~~~   54 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGY-PISILDREDWAVAESILANA   54 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTCGGGHHHHHTTC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCC-CcEecccccccccchhhhhc
Confidence            5899999 69999999999999999 89999988776555444333

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=89.35  E-value=0.35  Score=35.86  Aligned_cols=36  Identities=19%  Similarity=0.390  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      .|.++.|+|.|.+|...+++++..|+ +|++.+....
T Consensus        46 ~g~tvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~   81 (191)
T d1gdha1          46 DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRA   81 (191)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCC
T ss_pred             cccceEEeecccchHHHHHHHHhhcc-cccccccccc
Confidence            47999999999999999999999999 8999886543

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=89.13  E-value=0.23  Score=37.30  Aligned_cols=49  Identities=14%  Similarity=0.094  Sum_probs=38.1

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      +.+..+++++++||=+|+| .|..+..+++ .|+ +|+++|.+++-++.+++
T Consensus         7 ll~~~~l~~~~rVLDiGcG-~G~~~~~l~~-~~~-~v~gvD~s~~~i~~A~~   55 (231)
T d1vl5a_           7 LMQIAALKGNEEVLDVATG-GGHVANAFAP-FVK-KVVAFDLTEDILKVARA   55 (231)
T ss_dssp             HHHHHTCCSCCEEEEETCT-TCHHHHHHGG-GSS-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCcCEEEEeccc-CcHHHHHHHH-hCC-EEEEEECCHHHHhhhhh
Confidence            5577889999999999986 5666666664 477 89999999987766653

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=89.12  E-value=0.4  Score=34.20  Aligned_cols=40  Identities=18%  Similarity=0.120  Sum_probs=32.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHH
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~  232 (243)
                      ++..+|.|+|+|.+|...+.++...+..+++.+|.++++.
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~   44 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMP   44 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHH
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccc
Confidence            4557899999999998888777888876899999887654

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=89.11  E-value=0.47  Score=36.05  Aligned_cols=52  Identities=19%  Similarity=0.309  Sum_probs=40.2

Q ss_pred             hhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          184 GAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       184 ~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      ..+....+++||++||=+|+|. |..+..+++..|+ +|++++.+++-++.+++
T Consensus        23 ~~l~~~~~l~pg~~VLDiGCG~-G~~~~~la~~~~~-~v~GvD~s~~~~~~ar~   74 (245)
T d1nkva_          23 ATLGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKR   74 (245)
T ss_dssp             HHHHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCEEEEEcCCC-CHHHHHHHHhcCC-EEEEEecccchhhHHHH
Confidence            3466778899999998888743 3456677888898 99999999987766654

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.77  E-value=0.17  Score=40.51  Aligned_cols=39  Identities=36%  Similarity=0.476  Sum_probs=29.5

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChh
Q 026087          190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (243)
Q Consensus       190 ~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~  230 (243)
                      ..+.+|++||-+|+|. |++++.+|+ .|+++|++++.++.
T Consensus        29 ~~~~~~~~VLDiGcG~-G~ls~~aa~-~Ga~~V~avd~s~~   67 (316)
T d1oria_          29 RHLFKDKVVLDVGSGT-GILCMFAAK-AGARKVIGIECSSI   67 (316)
T ss_dssp             HHHHTTCEEEEETCTT-SHHHHHHHH-TTCSEEEEEECSTT
T ss_pred             cccCCcCEEEEEecCC-cHHHHHHHH-hCCCEEEEEcCcHH
Confidence            3456889999999875 666666555 68779999998764

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=88.36  E-value=0.46  Score=36.99  Aligned_cols=50  Identities=18%  Similarity=0.117  Sum_probs=39.3

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      +.....++++++||=+|+| .|..+..+++..|+ +|++++.++.-++.+++
T Consensus        59 l~~~~~l~~~~~vLDiGcG-~G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~  108 (282)
T d2o57a1          59 LAMTGVLQRQAKGLDLGAG-YGGAARFLVRKFGV-SIDCLNIAPVQNKRNEE  108 (282)
T ss_dssp             HHHTTCCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEeCCC-CcHHHhhhhccCCc-EEEEEeccchhhhhhhc
Confidence            4456789999999999886 34566678887898 89999999887766654

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=88.23  E-value=0.24  Score=38.95  Aligned_cols=31  Identities=39%  Similarity=0.522  Sum_probs=27.3

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       197 ~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      -|||+|+|..|+.++.-+...|+ +|+.++..
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~-~V~lvEK~   48 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGA-KVILIEKE   48 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            47889999999999999999999 89988754

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=88.16  E-value=0.34  Score=37.67  Aligned_cols=34  Identities=26%  Similarity=0.424  Sum_probs=30.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID  226 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~  226 (243)
                      --.|.+|+|.|-|.+|..+++.+..+|+ +|++++
T Consensus        33 ~l~g~~v~IQGfGnVG~~~a~~L~e~Ga-kvvavs   66 (255)
T d1bgva1          33 TLVGKTVALAGFGNVAWGAAKKLAELGA-KAVTLS   66 (255)
T ss_dssp             CSTTCEEEECCSSHHHHHHHHHHHHHTC-EEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEe
Confidence            3478899999999999999999999999 888774

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=88.03  E-value=0.57  Score=33.19  Aligned_cols=39  Identities=21%  Similarity=0.225  Sum_probs=32.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHH
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~  232 (243)
                      |..+|.|+|+|.+|...+.++...+..+++.+|.++++.
T Consensus         2 p~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~   40 (150)
T d1t2da1           2 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMP   40 (150)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcc
Confidence            456899999999998888888888888999999887654

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.00  E-value=0.59  Score=32.96  Aligned_cols=39  Identities=31%  Similarity=0.422  Sum_probs=32.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCChhH
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKK  231 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G-~~~vi~~~~~~~~  231 (243)
                      ..+.+|.|+|+|.+|...+..+...+ +++++.+|.++++
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~   43 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESK   43 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecccc
Confidence            35678999999999998888877777 4689999988876

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.65  E-value=0.6  Score=37.45  Aligned_cols=51  Identities=16%  Similarity=0.193  Sum_probs=41.4

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      +....+++++++||=+|+|. |..+.++|+..++.++++++.+++..+.+++
T Consensus       143 ~~~~~~l~~~~~vlD~GcG~-G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~  193 (328)
T d1nw3a_         143 MIDEIKMTDDDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAET  193 (328)
T ss_dssp             HHHHSCCCTTCEEEEETCTT-SHHHHHHHHHCCCSEEEEEECSHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEcCCCC-CHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Confidence            56778899999988888753 6667788899898889999999987766654

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.55  E-value=0.61  Score=37.04  Aligned_cols=33  Identities=21%  Similarity=0.377  Sum_probs=29.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcC
Q 026087          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI  227 (243)
Q Consensus       194 ~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~  227 (243)
                      .-+++||+|+ |.+|...+..+...|. +|+++++
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~-~V~~~d~   48 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDN   48 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence            4478999988 9999999999999999 8999975

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.55  E-value=0.49  Score=38.10  Aligned_cols=51  Identities=25%  Similarity=0.379  Sum_probs=41.7

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~-~~vi~~~~~~~~~~~~~~  237 (243)
                      +....+++||++||=.|+|. |.+++.+|+..|. .+|+.++.+++..+.+++
T Consensus        90 Il~~l~i~pG~rVLE~GtGs-G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~  141 (324)
T d2b25a1          90 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKK  141 (324)
T ss_dssp             HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEecccc-cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHH
Confidence            55678899999998888755 8888899998874 389999999998877653

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.49  E-value=0.58  Score=35.61  Aligned_cols=50  Identities=20%  Similarity=0.308  Sum_probs=36.7

Q ss_pred             hcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       188 ~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      ....++||++||=+|+|+ |..+..+++.....+|+++|.+++-++.+++.
T Consensus        68 ~~l~ikpG~~VLDlGcGs-G~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~  117 (230)
T d1g8sa_          68 KVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDA  117 (230)
T ss_dssp             CCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHH
T ss_pred             HhCCCCCCCEEEEeCEEc-CHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHH
Confidence            556799999999998742 34445556654334999999999888777654

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=87.45  E-value=0.52  Score=36.49  Aligned_cols=43  Identities=30%  Similarity=0.610  Sum_probs=33.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      .++|++||=+|+|. |.+++.+++ +|+ +|+++|.+++-++.+++
T Consensus       118 ~~~g~~VLDiGcGs-G~l~i~aa~-~g~-~V~gvDis~~av~~A~~  160 (254)
T d2nxca1         118 LRPGDKVLDLGTGS-GVLAIAAEK-LGG-KALGVDIDPMVLPQAEA  160 (254)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCGGGHHHHHH
T ss_pred             cCccCEEEEcccch-hHHHHHHHh-cCC-EEEEEECChHHHHHHHH
Confidence            67999999888864 566665554 688 89999999998877764

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.15  E-value=0.71  Score=34.49  Aligned_cols=48  Identities=19%  Similarity=0.335  Sum_probs=36.7

Q ss_pred             cCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       189 ~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      ...++||++||=+|+|+ |..+..+++..+..+|+++|.+++.++.+++
T Consensus        51 ~l~lkpg~~VLDlGcG~-G~~~~~la~~v~~g~V~gvDis~~~i~~a~~   98 (209)
T d1nt2a_          51 RLKLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLLE   98 (209)
T ss_dssp             CCCCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHHH
T ss_pred             cCCCCCCCEEEEeCCcC-CHHHHHHHHhccCCeEEEEeCCHHHHHHHHH
Confidence            46799999999998743 3455566776665599999999998877654

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=87.05  E-value=0.44  Score=35.91  Aligned_cols=49  Identities=18%  Similarity=0.190  Sum_probs=36.6

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      +....+++||++||=+|+|+ |..+..+++ .+. +|+++|.+++-++.+++
T Consensus         8 l~~~~~~~~~~rILDiGcGt-G~~~~~la~-~~~-~v~gvD~S~~~l~~A~~   56 (234)
T d1xxla_           8 MIKTAECRAEHRVLDIGAGA-GHTALAFSP-YVQ-ECIGVDATKEMVEVASS   56 (234)
T ss_dssp             HHHHHTCCTTCEEEEESCTT-SHHHHHHGG-GSS-EEEEEESCHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEeCCcC-cHHHHHHHH-hCC-eEEEEeCChhhhhhhhh
Confidence            55778899999999998743 455556665 466 89999999887666543

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.82  E-value=0.43  Score=35.11  Aligned_cols=35  Identities=26%  Similarity=0.394  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .+.+|.|+|.|.+|...+++++.+|+ +|++.+...
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~   77 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLGM-YVYFYDIEN   77 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             cceEEEEeecccchhhhhhhcccccc-eEeeccccc
Confidence            57899999999999999999999999 999998654

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=86.18  E-value=0.32  Score=38.56  Aligned_cols=31  Identities=42%  Similarity=0.537  Sum_probs=27.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       197 ~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      .|||+|+|..|+.++.-+...|+ +|++++..
T Consensus        21 DVvVIGaG~aGl~AA~~aa~~G~-~V~vlEK~   51 (317)
T d1qo8a2          21 QVLVVGAGSAGFNASLAAKKAGA-NVILVDKA   51 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            48899999999999999999999 88888754

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.05  E-value=0.92  Score=35.48  Aligned_cols=51  Identities=16%  Similarity=0.267  Sum_probs=40.8

Q ss_pred             hhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          185 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       185 ~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      .+....++++|++||=+|+|.=| ++..+++..|+ +|++++.+++-.+.+++
T Consensus        43 ~~~~~l~l~~g~~VLDiGCG~G~-~a~~~a~~~g~-~v~gi~ls~~q~~~a~~   93 (280)
T d2fk8a1          43 LNLDKLDLKPGMTLLDIGCGWGT-TMRRAVERFDV-NVIGLTLSKNQHARCEQ   93 (280)
T ss_dssp             HHHTTSCCCTTCEEEEESCTTSH-HHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHHHcCCCCCCEEEEecCCchH-HHHHHHHhCce-eEEEecchHHHHHHHHH
Confidence            36677889999999999985434 45668888899 99999999988776654

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=85.88  E-value=0.67  Score=34.12  Aligned_cols=43  Identities=19%  Similarity=0.196  Sum_probs=33.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      ++++++||=+|+|+ |..+..+++ .|. +|+++|.+++-++.+++
T Consensus        35 l~~~~~ILDiGcG~-G~~~~~la~-~~~-~v~giD~S~~~i~~ak~   77 (226)
T d1ve3a1          35 MKKRGKVLDLACGV-GGFSFLLED-YGF-EVVGVDISEDMIRKARE   77 (226)
T ss_dssp             CCSCCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCHHHHHHHHH
T ss_pred             cCCCCEEEEECCCc-chhhhhHhh-hhc-ccccccccccchhhhhh
Confidence            46888999898855 556667776 577 89999999988877764

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=85.69  E-value=0.35  Score=38.27  Aligned_cols=31  Identities=45%  Similarity=0.724  Sum_probs=27.3

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       198 vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      |+|+|+|..|+.++..+...|+ +|++++..+
T Consensus        26 VvVIG~G~aGl~aA~~la~~G~-~V~llEk~~   56 (322)
T d1d4ca2          26 VVIIGSGGAGLAAAVSARDAGA-KVILLEKEP   56 (322)
T ss_dssp             EEEECSSHHHHHHHHHHHTTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            8899999999999999999999 899997543

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.65  E-value=0.77  Score=38.09  Aligned_cols=51  Identities=24%  Similarity=0.373  Sum_probs=41.8

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      ++...++++|+++|=+|+| .|..+.++|+..|+.++++++.++.-++.+++
T Consensus       208 Il~~l~Lkpgd~fLDLGCG-~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~  258 (406)
T d1u2za_         208 VYQQCQLKKGDTFMDLGSG-VGNCVVQAALECGCALSFGCEIMDDASDLTIL  258 (406)
T ss_dssp             HHHHTTCCTTCEEEEESCT-TSHHHHHHHHHHCCSEEEEEECCHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEeCCCC-CcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            5677889999988777774 47778899999998789999999987776654

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=85.61  E-value=1.1  Score=34.91  Aligned_cols=54  Identities=17%  Similarity=0.196  Sum_probs=40.4

Q ss_pred             hcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHHhccc
Q 026087          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRVLNALAM  241 (243)
Q Consensus       188 ~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~--~~~~~~~~~~~~Ga~  241 (243)
                      .....+++.+|+...+|..|.+.+..++.+|.+-+|.+.  .++.|.+.++.+||.
T Consensus        53 ~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~  108 (292)
T d2bhsa1          53 KRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAE  108 (292)
T ss_dssp             HTTSCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEEEESCCCHHHHHHHHHTTCE
T ss_pred             HhCCcCCCceeeeecccchhHHHHHHHHhcCcceEeeeccCchhhhhHHHHHhCCC
Confidence            344456677766667899999999999999984333332  355688999999986

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=85.39  E-value=0.55  Score=34.94  Aligned_cols=48  Identities=27%  Similarity=0.428  Sum_probs=33.8

Q ss_pred             hcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       188 ~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      ...++ .|++||=+|+|+ |.+++. +...|+++|++++.+++-++.+++.
T Consensus        43 ~~~dl-~Gk~VLDlGcGt-G~l~i~-a~~~ga~~V~~vDid~~a~~~ar~N   90 (197)
T d1ne2a_          43 NDGNI-GGRSVIDAGTGN-GILACG-SYLLGAESVTAFDIDPDAIETAKRN   90 (197)
T ss_dssp             HHTSS-BTSEEEEETCTT-CHHHHH-HHHTTBSEEEEEESCHHHHHHHHHH
T ss_pred             HcCCC-CCCEEEEeCCCC-cHHHHH-HHHcCCCcccccccCHHHHHHHHHc
Confidence            34444 589999888753 444443 4456777899999999988877653

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.29  E-value=0.98  Score=35.10  Aligned_cols=51  Identities=20%  Similarity=0.302  Sum_probs=40.9

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~-~~vi~~~~~~~~~~~~~~  237 (243)
                      +....+++||++||=.|+|+ |.++..+|+..|- .+|+.++.+++.++.+++
T Consensus        88 Ii~~l~i~PG~~VLE~G~Gs-G~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~  139 (264)
T d1i9ga_          88 IVHEGDIFPGARVLEAGAGS-GALTLSLLRAVGPAGQVISYEQRADHAEHARR  139 (264)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEecCcCC-cHHHHHHHHhhCCCcEEEEecCCHHHHHHHHH
Confidence            56778899999998887643 6677788888763 489999999998887764

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.23  E-value=1.6  Score=32.89  Aligned_cols=46  Identities=24%  Similarity=0.403  Sum_probs=33.1

Q ss_pred             CCCCCCEEEEEcC--CHHHHHHHHHHHHcCC---CEEEEEcCChhHHHHHH
Q 026087          191 KVEPGSIVAVFGL--GTVGLAVAEGAKAAGA---SRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       191 ~~~~g~~vlV~G~--g~~G~~a~~~a~~~G~---~~vi~~~~~~~~~~~~~  236 (243)
                      .+++|++||.+|+  |-.......++...|+   .+|+.++.+++-.+.++
T Consensus        77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~  127 (223)
T d1r18a_          77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSK  127 (223)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHH
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHH
Confidence            7899999999986  4444445555555553   37999999988766654

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=85.22  E-value=0.81  Score=32.07  Aligned_cols=47  Identities=19%  Similarity=0.082  Sum_probs=36.7

Q ss_pred             chhhhhhhhcCCCCCCCEEEEE--cCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          180 PTGLGAVWNTAKVEPGSIVAVF--GLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       180 ~ta~~~~~~~~~~~~g~~vlV~--G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .|....+  .....+++.++|+  |+|-+|+-+++++..+|+ +|..+...+
T Consensus        26 ~t~~d~l--~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~-~Vtlv~~~~   74 (156)
T d1djqa2          26 LTPEQVM--DGKKKIGKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGVH   74 (156)
T ss_dssp             ECHHHHH--HTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             ECHHHHh--cCccccCCceEEEecCCChHHHHHHHHHHHcCC-eEEEEecCC
Confidence            3544432  3557788888887  779999999999999999 888887665

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.16  E-value=0.54  Score=37.69  Aligned_cols=35  Identities=23%  Similarity=0.298  Sum_probs=30.2

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       193 ~~g~~vlV~G~-g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      .++-+|||+|+ |.+|...+..+...|. +|+++++.
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~~   48 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGH-YVIASDWK   48 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCC
Confidence            35678999987 9999999999999999 89998754

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.00  E-value=1.3  Score=35.73  Aligned_cols=55  Identities=20%  Similarity=0.258  Sum_probs=41.4

Q ss_pred             hcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHHhcccC
Q 026087          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRVLNALAMS  242 (243)
Q Consensus       188 ~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~--~~~~~~~~~~~~Ga~~  242 (243)
                      ....+++++.|+...+|..|.+.+.+|+.+|.+-++++.  .++.|.+.++.+||+.
T Consensus        90 ~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~v  146 (355)
T d1jbqa_          90 RDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEI  146 (355)
T ss_dssp             HHTCSCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEE
T ss_pred             HcCCcccCceEEEecccchhhHHHHHHHhccCCeEEEeeccchHHHHHHHHhcCCeE
Confidence            344566777777767899999999999999994444442  3456899999999863

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=84.92  E-value=0.9  Score=30.92  Aligned_cols=57  Identities=18%  Similarity=0.061  Sum_probs=45.4

Q ss_pred             hhhcCCCCCCCEEEEE-cCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          186 VWNTAKVEPGSIVAVF-GLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~-G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      .+...+++.-+.+++. ..-..-++++++++.+|..++++...+++..+.++++|++.
T Consensus        57 ~l~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~~~~~~~l~~~G~d~  114 (132)
T d1lssa_          57 TLEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFERLGVDV  114 (132)
T ss_dssp             HHHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHTTCSE
T ss_pred             hhhhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEEecCHHHHHHHHHCCCCE
Confidence            4566677776766664 33456778899999999989999989999999999999974

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.87  E-value=0.61  Score=34.06  Aligned_cols=49  Identities=22%  Similarity=0.285  Sum_probs=39.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHhcccC
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNALAMS  242 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~Ga~~  242 (243)
                      ++++|.|+|=|.-|.+.++-+|-.|.+.+++........+.+++-|++.
T Consensus        15 k~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v   63 (182)
T d1np3a2          15 QGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKV   63 (182)
T ss_dssp             HTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEE
T ss_pred             CCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhcccc
Confidence            5789999999999999999999999965666654445678888888753

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=84.83  E-value=0.96  Score=31.76  Aligned_cols=38  Identities=24%  Similarity=0.300  Sum_probs=31.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCChhHH
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKF  232 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~G-~~~vi~~~~~~~~~  232 (243)
                      ..+|.|+|+|.+|...+..+...| +++++.+|.++++.
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~   43 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRT   43 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchh
Confidence            357999999999998877777776 46899999888764

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.81  E-value=0.65  Score=34.88  Aligned_cols=36  Identities=22%  Similarity=0.248  Sum_probs=29.6

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCC-CEEEEEcCChh
Q 026087          195 GSIVAVFGL-GTVGLAVAEGAKAAGA-SRVIGIDIDPK  230 (243)
Q Consensus       195 g~~vlV~G~-g~~G~~a~~~a~~~G~-~~vi~~~~~~~  230 (243)
                      +.+|||+|+ |.+|...++.+...|. .+|+++++++.
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~   51 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKL   51 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChh
Confidence            468999998 9999998888887774 48999887653

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.29  E-value=0.94  Score=34.55  Aligned_cols=34  Identities=29%  Similarity=0.389  Sum_probs=28.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHH-HHcCCCEEEEEc
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGA-KAAGASRVIGID  226 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a-~~~G~~~vi~~~  226 (243)
                      --+|.+|+|.|-|.+|..+++.+ +.+|+ +|++++
T Consensus        28 ~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga-~vv~vs   62 (234)
T d1b26a1          28 DPKKATVAVQGFGNVGQFAALLISQELGS-KVVAVS   62 (234)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHHCC-EEEEEE
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCC-ceEEee
Confidence            34689999999999999999877 67899 888775

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=84.24  E-value=0.82  Score=34.68  Aligned_cols=50  Identities=18%  Similarity=0.484  Sum_probs=38.6

Q ss_pred             hcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCChhHHHHHHHh
Q 026087          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       188 ~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~-~~vi~~~~~~~~~~~~~~~  238 (243)
                      ....++||++||=+|+|+ |..+..+++..|- .+|++++.+++.++.+++.
T Consensus        67 ~~l~i~pG~~VLDlGaGs-G~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~  117 (227)
T d1g8aa_          67 KNFPIKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPI  117 (227)
T ss_dssp             CCCCCCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHH
T ss_pred             cccccCCCCEEEEeccCC-CHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHH
Confidence            556799999999998743 5556677777653 4899999999988877653

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=84.21  E-value=1.1  Score=31.54  Aligned_cols=37  Identities=41%  Similarity=0.582  Sum_probs=30.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCChhHH
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKF  232 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G-~~~vi~~~~~~~~~  232 (243)
                      ++|.|+|+|.+|...+..+...| +++++.+|.++++.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~   39 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKV   39 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchh
Confidence            57889999999988777777766 56899999988874

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=83.95  E-value=0.93  Score=34.31  Aligned_cols=45  Identities=24%  Similarity=0.270  Sum_probs=35.5

Q ss_pred             hhhhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCC
Q 026087          184 GAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (243)
Q Consensus       184 ~~~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~  228 (243)
                      +++......-...++++.|+|..|...+++....+.++++.+|+.
T Consensus        15 ~a~~~~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          15 NALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             HHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             HHHHHhCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            334334444566889999999999999999999999999999864

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=83.87  E-value=1.5  Score=31.23  Aligned_cols=41  Identities=27%  Similarity=0.424  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCChhHH
Q 026087          192 VEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKF  232 (243)
Q Consensus       192 ~~~g~~vlV~G~g~~G~~a~~~a~~~G-~~~vi~~~~~~~~~  232 (243)
                      ..+..+|.|+|+|.+|...+..+...| +++++.+|.++++.
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a   58 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKL   58 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHH
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchh
Confidence            445578999999999999888888888 47899999887654

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=83.84  E-value=1.2  Score=33.34  Aligned_cols=50  Identities=20%  Similarity=0.298  Sum_probs=38.3

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHHh
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLNA  238 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~~  238 (243)
                      ++.....++.++||=+|+|+ |..+..+++ .|+ +|+++|.+++-++.+++.
T Consensus        33 ~~~~~~~~~~~~iLDiGcGt-G~~~~~l~~-~~~-~v~gvD~s~~mi~~a~~~   82 (251)
T d1wzna1          33 IFKEDAKREVRRVLDLACGT-GIPTLELAE-RGY-EVVGLDLHEEMLRVARRK   82 (251)
T ss_dssp             HHHHTCSSCCCEEEEETCTT-CHHHHHHHH-TTC-EEEEEESCHHHHHHHHHH
T ss_pred             HHHHhcCCCCCEEEEeCCCC-Cccchhhcc-cce-EEEEEeeccccccccccc
Confidence            44556677888999999875 676777776 688 899999999877777653

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=83.74  E-value=0.82  Score=33.18  Aligned_cols=49  Identities=24%  Similarity=0.228  Sum_probs=34.4

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      +....++++|++||=+|+|. |..++.+|+. +. +|++++.+++.++.+++
T Consensus        25 il~~l~~~~g~~VLDiGcGs-G~~s~~lA~~-~~-~V~avD~~~~~l~~a~~   73 (186)
T d1l3ia_          25 IMCLAEPGKNDVAVDVGCGT-GGVTLELAGR-VR-RVYAIDRNPEAISTTEM   73 (186)
T ss_dssp             HHHHHCCCTTCEEEEESCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEEECCe-Eccccccccc-ce-EEEEecCCHHHHHHHHH
Confidence            34556789999988887632 2334455553 44 99999999998877754

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=83.74  E-value=0.47  Score=36.75  Aligned_cols=33  Identities=30%  Similarity=0.374  Sum_probs=26.3

Q ss_pred             CEEEEEcCCHHHHHHHHH-HHHcCCCEEEEEcCCh
Q 026087          196 SIVAVFGLGTVGLAVAEG-AKAAGASRVIGIDIDP  229 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~-a~~~G~~~vi~~~~~~  229 (243)
                      -.|+|+|+|+.|+.++.. ++..|. +|.+++..+
T Consensus        34 ~DViVIGaGpaGL~aA~~LA~~~G~-~V~vlE~~~   67 (278)
T d1rp0a1          34 TDVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQSV   67 (278)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTS-CEEEEESSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHccCC-eEEEEecCC
Confidence            348899999999987665 566799 899998664

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=83.56  E-value=1.4  Score=30.70  Aligned_cols=37  Identities=30%  Similarity=0.433  Sum_probs=30.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-CEEEEEcCChhHH
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKF  232 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~-~~vi~~~~~~~~~  232 (243)
                      .+|.|+|+|.+|..++..+...+. ++++.+|.++++.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~   39 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERV   39 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccc
Confidence            468888999999998877777774 6899999888764

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=83.51  E-value=0.98  Score=30.05  Aligned_cols=34  Identities=18%  Similarity=0.016  Sum_probs=26.6

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHc---CCCEEEEEcCCh
Q 026087          195 GSIVAVFGLGTVGLAVAEGAKAA---GASRVIGIDIDP  229 (243)
Q Consensus       195 g~~vlV~G~g~~G~~a~~~a~~~---G~~~vi~~~~~~  229 (243)
                      .++++|+|+|.+|.=.++++..+   |. +|..+.+.+
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~-~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGG-QVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTC-EEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhccccc-ccceecccc
Confidence            47899999999998877765544   67 788887655

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.92  E-value=0.88  Score=34.26  Aligned_cols=36  Identities=19%  Similarity=0.172  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHH--------------------cCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAKA--------------------AGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~~--------------------~G~~~vi~~~~~~  229 (243)
                      .|++|+|+|+|.+++-++.++..                    .|+++|..+.++.
T Consensus        38 ~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg   93 (225)
T d1cjca1          38 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG   93 (225)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             cCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence            58999999999999999988876                    5888999997664

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.92  E-value=1.4  Score=34.66  Aligned_cols=49  Identities=16%  Similarity=0.295  Sum_probs=39.3

Q ss_pred             hhhcCCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHH
Q 026087          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVL  236 (243)
Q Consensus       186 ~~~~~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~  236 (243)
                      +....++++|++||=+|+|-= .++..+|+..|+ +|++++.+++-.+.++
T Consensus        53 ~~~~l~l~~G~~VLDiGCG~G-~~~~~~a~~~g~-~v~git~s~~q~~~a~  101 (291)
T d1kpia_          53 ALDKLNLEPGMTLLDIGCGWG-STMRHAVAEYDV-NVIGLTLSENQYAHDK  101 (291)
T ss_dssp             HHHTTCCCTTCEEEEETCTTS-HHHHHHHHHHCC-EEEEEESCHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEecCcch-HHHHHHHHhcCc-ceeeccchHHHHHHHH
Confidence            567889999999999998532 346788888999 9999999998665554

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=82.62  E-value=1.2  Score=29.69  Aligned_cols=37  Identities=22%  Similarity=0.089  Sum_probs=28.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCC--EEEEEcCCh
Q 026087          193 EPGSIVAVFGLGTVGLAVAEGAKAAGAS--RVIGIDIDP  229 (243)
Q Consensus       193 ~~g~~vlV~G~g~~G~~a~~~a~~~G~~--~vi~~~~~~  229 (243)
                      +.+++++|+|+|.+|.=.+..+..++.+  .|..+.+.+
T Consensus        18 ~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          18 EPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             hcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            3457999999999999888777776642  688887655

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.04  E-value=1.1  Score=33.49  Aligned_cols=36  Identities=28%  Similarity=0.316  Sum_probs=29.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHH--------------------HcCCCEEEEEcCCh
Q 026087          194 PGSIVAVFGLGTVGLAVAEGAK--------------------AAGASRVIGIDIDP  229 (243)
Q Consensus       194 ~g~~vlV~G~g~~G~~a~~~a~--------------------~~G~~~vi~~~~~~  229 (243)
                      .|++|+|+|+|.+++-++.++.                    ..|+++|..+.+..
T Consensus        38 ~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          38 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             cCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            4799999999999998877665                    67898999987653

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=81.57  E-value=0.75  Score=35.64  Aligned_cols=42  Identities=29%  Similarity=0.397  Sum_probs=31.3

Q ss_pred             CCCCCEEEEEcC--CHHHHHHHHHHHHcCCCEEEEEcCChhHHHHHHH
Q 026087          192 VEPGSIVAVFGL--GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRVLN  237 (243)
Q Consensus       192 ~~~g~~vlV~G~--g~~G~~a~~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (243)
                      +++|++||-.++  |.+++   .+|+.-++ +|++++.+++..+.+++
T Consensus       105 ~~~g~~VlD~~aG~G~~~l---~~a~~~~~-~V~avd~n~~a~~~~~~  148 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSL---PIAVYGKA-KVIAIEKDPYTFKFLVE  148 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHH---HHHHHTCC-EEEEECCCHHHHHHHHH
T ss_pred             cCCccEEEECcceEcHHHH---HHHHhCCc-EEEEecCCHHHHHHHHH
Confidence            689999998865  55554   55555445 99999999998877754

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=81.50  E-value=0.75  Score=35.19  Aligned_cols=32  Identities=25%  Similarity=0.227  Sum_probs=27.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       197 ~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      .++|+|+|+.|+.++..+..+|. +|.+++..+
T Consensus        44 DvvVIGgG~aG~~aA~~~a~~G~-kv~vve~~~   75 (261)
T d1mo9a1          44 DAIFIGGGAAGRFGSAYLRAMGG-RQLIVDRWP   75 (261)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            47777999999999999999999 777777544

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=81.46  E-value=1.4  Score=30.47  Aligned_cols=37  Identities=22%  Similarity=0.241  Sum_probs=30.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC-CCEEEEEcCChhHHH
Q 026087          197 IVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFD  233 (243)
Q Consensus       197 ~vlV~G~g~~G~~a~~~a~~~G-~~~vi~~~~~~~~~~  233 (243)
                      +|.|+|+|.+|...+..+...+ +++++.+|.++++.+
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~   39 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQ   39 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccch
Confidence            4778899999998777777777 468999998887654

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=81.34  E-value=1.7  Score=35.56  Aligned_cols=52  Identities=21%  Similarity=0.062  Sum_probs=38.7

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEc--CChhHHHHHHHhcccC
Q 026087          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRVLNALAMS  242 (243)
Q Consensus       191 ~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~--~~~~~~~~~~~~Ga~~  242 (243)
                      +.+++.+|+-..+|+.|.+.+.+++.+|.+-++++.  .++.|.+.++.+||+.
T Consensus       140 ~~~~g~~VVeaSSGN~GiAlA~~aa~lGik~~Iv~P~~~~~~K~~~ira~GAeV  193 (382)
T d1wkva1         140 RVEKGSLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQV  193 (382)
T ss_dssp             TSCTTCEEEEECCHHHHHHHHHHHHHTTCEEEEEEETTSCHHHHHHHHHTTCEE
T ss_pred             ccCCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEeeccccccccccccccCcce
Confidence            467777655456699999999999999994333333  3456888899999863

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.76  E-value=0.64  Score=37.15  Aligned_cols=38  Identities=34%  Similarity=0.478  Sum_probs=27.5

Q ss_pred             CCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCCh
Q 026087          190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (243)
Q Consensus       190 ~~~~~g~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~  229 (243)
                      ....+|++||-+|+|. |+++..++ ..|+++|++++.++
T Consensus        34 ~~~~~~~~VLDlGcGt-G~ls~~aa-~~Ga~~V~avd~s~   71 (328)
T d1g6q1_          34 KDLFKDKIVLDVGCGT-GILSMFAA-KHGAKHVIGVDMSS   71 (328)
T ss_dssp             HHHHTTCEEEEETCTT-SHHHHHHH-HTCCSEEEEEESST
T ss_pred             cccCCcCEEEEeCCCC-CHHHHHHH-HhCCCEEEEEeCCH
Confidence            3456789999998863 55555444 46877999999875

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=80.66  E-value=1.5  Score=30.47  Aligned_cols=37  Identities=22%  Similarity=0.229  Sum_probs=29.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCEEEEEcCChhHH
Q 026087          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (243)
Q Consensus       196 ~~vlV~G~g~~G~~a~~~a~~~G~~~vi~~~~~~~~~  232 (243)
                      .+|.|+|+|.+|...+.++...+...++.+|.++++.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~   38 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVP   38 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccc
Confidence            3688889999998877666666765899999877754