Citrus Sinensis ID: 026129

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
MPAAKKNSDNSRIGHAFNKLLKQIGNPVEFELPDWFIKPKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGSSGVCDRDCHCGMLLSSCSSGCKCGNSCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQYEFLHDSLIAYC
cccccccccccccHHHHHHHHHHHccccccccccccccccccccEEEcccEEccccccccccccccccEEccccccccccccccccccEEcccccccccccccccccccccccccEEEEEcccccEEEEEccccccccEEEEEEEEEccHHHHHHHHHHHHHcccccEEEEEEccccEEEccccccEEEccccccccccEEEEEEEccccEEEEEEccccccccEEEEEcccccccccccEEc
cccHcHccccccHHHHHHHHHHHHHccHHHHHHHHHccccccccEEEEEcEEccccEccccHccccccccccccccccccccHHHHHHHHHHcccccccccccccccEEEcccccEEEEEEcccccEEEEccccccccEEEEEccEEccHHHHHHHHHHHHHccccEEEEEEEcccEEEEccccccccHEEEccccccccEEEEEEccEEEEEEEEEEccccccEEEEEEEEEEccccEEEcc
mpaakknsdnsriGHAFNKLLKQignpvefelpdwfikpkaipyvfIKRNIYLTKRIKRrleddgifcsctaspgssgvcdrdchcgmllsscssgckcgnsclnkpfqnrpvkkmklvqtekcgagivadedikRGEFVIEYVGEVIDDQTCEERLWKMKhlgetnfylCEINRDMVIDAtykgnksryinhsccpnteMQKWIIdgetrigifatrdikkgenltYDYQYEFLHDSLIAYC
mpaakknsdnsriGHAFNKLLKQIGNPVEFELPDwfikpkaipyvfiKRNIYLTKRIKRRLEDDGIFCSCTASPGSSGVCDRDCHCGMLLSSCSSGCKCGNSclnkpfqnrpvKKMKLVQTEkcgagivadedikrGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQYEFLHDSLIAYC
MPAAKKNSDNSRIGHAFNKLLKQIGNPVEFELPDWFIKPKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGSSGVCDRDCHcgmllsscssgckcgnsclNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQYEFLHDSLIAYC
*************GHAFNKLLKQIGNPVEFELPDWFIKPKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGSSGVCDRDCHCGMLLSSCSSGCKCGNSCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQYEFLHDSLIAY*
*************************NPVEFELPDWFIKPKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGSSGVCDRDCHCGMLLSSCSSGCKCGNSCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQYEFLHDSLIAYC
**********SRIGHAFNKLLKQIGNPVEFELPDWFIKPKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGSSGVCDRDCHCGMLLSSCSSGCKCGNSCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQYEFLHDSLIAYC
**********SRIGHAFNKLLKQIGNPVEFELPDWFIKPKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGSSGVCDRDCHCGMLLSSCSSGCKCGNSCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQYEFLHDSLIAYC
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPAAKKNSDNSRIGHAFNKLLKQIGNPVEFELPDWFIKPKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGSSGVCDRDCHCGMLLSSCSSGCKCGNSCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQYEFLHDSLIAYC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query243 2.2.26 [Sep-21-2011]
Q945S8 363 Histone-lysine N-methyltr yes no 0.954 0.639 0.752 8e-91
Q9M1X9 352 Putative histone-lysine N no no 0.979 0.676 0.661 4e-78
Q949T8497 Histone-lysine N-methyltr no no 0.810 0.396 0.497 5e-53
Q2LAE1 1759 Histone-lysine N-methyltr no no 0.777 0.107 0.410 4e-35
Q9VYD1 2313 Probable histone-lysine N yes no 0.818 0.086 0.4 7e-34
Q9BYW2 2564 Histone-lysine N-methyltr yes no 0.781 0.074 0.365 9e-33
O88491 2588 Histone-lysine N-methyltr no no 0.691 0.064 0.414 1e-32
Q6P2L6 1439 Histone-lysine N-methyltr no no 0.888 0.150 0.360 5e-32
Q96L73 2696 Histone-lysine N-methyltr no no 0.691 0.062 0.414 6e-32
Q9BZ95 1437 Histone-lysine N-methyltr no no 0.802 0.135 0.376 9e-32
>sp|Q945S8|ASHH3_ARATH Histone-lysine N-methyltransferase ASHH3 OS=Arabidopsis thaliana GN=ASHH3 PE=2 SV=2 Back     alignment and function desciption
 Score =  333 bits (853), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 176/234 (75%), Positives = 201/234 (85%), Gaps = 2/234 (0%)

Query: 1   MPAAKKNSDNSRIGHAFNKLLKQIGNPVEFELPDWFIKPKAIPYVFIKRNIYLTKRIKRR 60
           MPA+KK SD + +G  F+KLL QIG   EFELP+W  K K  PY+FI+RNIYLTK++KRR
Sbjct: 1   MPASKKISDRNHLGQVFDKLLNQIGESEEFELPEWLNKGKPTPYIFIRRNIYLTKKVKRR 60

Query: 61  LEDDGIFCSCTASPGSS--GVCDRDCHCGMLLSSCSSGCKCGNSCLNKPFQNRPVKKMKL 118
           +EDDGIFCSC++S   S   VC  +CHCGML SSCSS CKCG+ C NKPFQ R VKKMKL
Sbjct: 61  VEDDGIFCSCSSSSPGSSSTVCGSNCHCGMLFSSCSSSCKCGSECNNKPFQQRHVKKMKL 120

Query: 119 VQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMV 178
           +QTEKCG+GIVA+E+I+ GEF+IEYVGEVIDD+TCEERLWKMKH GETNFYLCEI RDMV
Sbjct: 121 IQTEKCGSGIVAEEEIEAGEFIIEYVGEVIDDKTCEERLWKMKHRGETNFYLCEITRDMV 180

Query: 179 IDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQY 232
           IDAT+KGNKSRYINHSC PNT+MQKWIIDGETRIGIFATR IKKGE+LTYDYQ+
Sbjct: 181 IDATHKGNKSRYINHSCNPNTQMQKWIIDGETRIGIFATRGIKKGEHLTYDYQF 234
Histone methyltransferase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3
>sp|Q9M1X9|ASHH4_ARATH Putative histone-lysine N-methyltransferase ASHH4 OS=Arabidopsis thaliana GN=ASHH4 PE=3 SV=1 Back     alignment and function description
>sp|Q949T8|ASHR3_ARATH Histone-lysine N-methyltransferase ASHR3 OS=Arabidopsis thaliana GN=ASHR3 PE=1 SV=1 Back     alignment and function description
>sp|Q2LAE1|ASHH2_ARATH Histone-lysine N-methyltransferase ASHH2 OS=Arabidopsis thaliana GN=ASHH2 PE=1 SV=1 Back     alignment and function description
>sp|Q9VYD1|C1716_DROME Probable histone-lysine N-methyltransferase CG1716 OS=Drosophila melanogaster GN=Set2 PE=1 SV=2 Back     alignment and function description
>sp|Q9BYW2|SETD2_HUMAN Histone-lysine N-methyltransferase SETD2 OS=Homo sapiens GN=SETD2 PE=1 SV=3 Back     alignment and function description
>sp|O88491|NSD1_MOUSE Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific OS=Mus musculus GN=Nsd1 PE=1 SV=1 Back     alignment and function description
>sp|Q6P2L6|NSD3_MOUSE Histone-lysine N-methyltransferase NSD3 OS=Mus musculus GN=Whsc1l1 PE=1 SV=2 Back     alignment and function description
>sp|Q96L73|NSD1_HUMAN Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific OS=Homo sapiens GN=NSD1 PE=1 SV=1 Back     alignment and function description
>sp|Q9BZ95|NSD3_HUMAN Histone-lysine N-methyltransferase NSD3 OS=Homo sapiens GN=WHSC1L1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query243
449505027 373 PREDICTED: histone-lysine N-methyltransf 0.954 0.621 0.849 1e-115
449442399 373 PREDICTED: histone-lysine N-methyltransf 0.954 0.621 0.849 1e-115
224117806 351 SET domain protein [Populus trichocarpa] 0.950 0.658 0.857 1e-112
356530969 349 PREDICTED: histone-lysine N-methyltransf 0.954 0.664 0.824 1e-111
356559949 349 PREDICTED: histone-lysine N-methyltransf 0.954 0.664 0.824 1e-110
297737225 438 unnamed protein product [Vitis vinifera] 0.954 0.529 0.808 1e-100
359489946 377 PREDICTED: histone-lysine N-methyltransf 0.938 0.604 0.815 1e-99
357498513 348 Histone-lysine N-methyltransferase ASHH3 0.942 0.658 0.754 1e-95
297824409 363 SET domain-containing protein [Arabidops 0.954 0.639 0.764 3e-90
18406465 363 histone-lysine N-methyltransferase ASHH3 0.954 0.639 0.752 5e-89
>gi|449505027|ref|XP_004162355.1| PREDICTED: histone-lysine N-methyltransferase ASHH3-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/233 (84%), Positives = 217/233 (93%), Gaps = 1/233 (0%)

Query: 1   MPAAKKNSDNSRIGHAFNKLLKQIGNPVEFELPDWFIKPKAIPYVFIKRNIYLTKRIKRR 60
           MPA KKNS+ SRIG+ F+KL++QIGNPV+FELPDWF K K +PY FI+RNIYLTK+ KRR
Sbjct: 1   MPAIKKNSECSRIGNVFHKLMRQIGNPVDFELPDWFSKWKPMPYTFIRRNIYLTKKFKRR 60

Query: 61  LEDDGIFCSCTASPGSSGVC-DRDCHCGMLLSSCSSGCKCGNSCLNKPFQNRPVKKMKLV 119
           +EDDGIFCSC+ SPGS GVC D+DCHCGMLLSSCSSGCKCG  CLNKPFQ+RPVKKMKLV
Sbjct: 61  VEDDGIFCSCSPSPGSPGVCCDKDCHCGMLLSSCSSGCKCGVLCLNKPFQHRPVKKMKLV 120

Query: 120 QTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVI 179
           +TEKCG+GIVADEDIK+GEFVIEYVGEVIDD+TCEERLW MKH GETNFYLCEINRDMVI
Sbjct: 121 KTEKCGSGIVADEDIKQGEFVIEYVGEVIDDKTCEERLWNMKHRGETNFYLCEINRDMVI 180

Query: 180 DATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQY 232
           DATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDI KGE+LTYDYQ+
Sbjct: 181 DATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIPKGEHLTYDYQF 233

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449442399|ref|XP_004138969.1| PREDICTED: histone-lysine N-methyltransferase ASHH3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224117806|ref|XP_002331636.1| SET domain protein [Populus trichocarpa] gi|222874032|gb|EEF11163.1| SET domain protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356530969|ref|XP_003534051.1| PREDICTED: histone-lysine N-methyltransferase ASHH3-like [Glycine max] Back     alignment and taxonomy information
>gi|356559949|ref|XP_003548258.1| PREDICTED: histone-lysine N-methyltransferase ASHH3-like [Glycine max] Back     alignment and taxonomy information
>gi|297737225|emb|CBI26426.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359489946|ref|XP_002268035.2| PREDICTED: histone-lysine N-methyltransferase ASHH3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357498513|ref|XP_003619545.1| Histone-lysine N-methyltransferase ASHH3 [Medicago truncatula] gi|355494560|gb|AES75763.1| Histone-lysine N-methyltransferase ASHH3 [Medicago truncatula] Back     alignment and taxonomy information
>gi|297824409|ref|XP_002880087.1| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297325926|gb|EFH56346.1| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18406465|ref|NP_566010.1| histone-lysine N-methyltransferase ASHH3 [Arabidopsis thaliana] gi|94707125|sp|Q945S8.2|ASHH3_ARATH RecName: Full=Histone-lysine N-methyltransferase ASHH3; AltName: Full=ASH1 homolog 3; AltName: Full=Protein SET DOMAIN GROUP 7 gi|15028059|gb|AAK76560.1| unknown protein [Arabidopsis thaliana] gi|20197070|gb|AAC23419.2| expressed protein [Arabidopsis thaliana] gi|20259301|gb|AAM14386.1| unknown protein [Arabidopsis thaliana] gi|330255289|gb|AEC10383.1| histone-lysine N-methyltransferase ASHH3 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query243
TAIR|locus:2051769 363 ASHH3 "histone-lysine N-methyl 0.954 0.639 0.705 7.5e-89
TAIR|locus:2080462 352 ASHH4 "histone-lysine N-methyl 0.983 0.678 0.618 6.3e-76
TAIR|locus:2126714497 SDG4 "SET domain group 4" [Ara 0.810 0.396 0.453 6.2e-46
DICTYBASE|DDB_G0268132 898 DDB_G0268132 "SET domain-conta 0.880 0.238 0.361 4.3e-30
UNIPROTKB|F1MMY4 1368 WHSC1 "Uncharacterized protein 0.567 0.100 0.446 1.7e-28
UNIPROTKB|F1S8S0 1361 WHSC1 "Uncharacterized protein 0.572 0.102 0.428 2.7e-28
UNIPROTKB|D4A3R4 1439 Whsc1l1 "Protein Whsc1l1" [Rat 0.921 0.155 0.329 3.8e-28
RGD|1308980 1443 Whsc1l1 "Wolf-Hirschhorn syndr 0.921 0.155 0.329 3.9e-28
FB|FBgn0030486 2313 Set2 "Set2" [Drosophila melano 0.925 0.097 0.341 5.7e-28
MGI|MGI:2142581 1439 Whsc1l1 "Wolf-Hirschhorn syndr 0.921 0.155 0.329 1e-27
TAIR|locus:2051769 ASHH3 "histone-lysine N-methyltransferase ASHH3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 887 (317.3 bits), Expect = 7.5e-89, P = 7.5e-89
 Identities = 165/234 (70%), Positives = 189/234 (80%)

Query:     1 MPAAKKNSDNSRIGHAFNKLLKQIGNPVEFELPDWFIKPKAIPYVFIKRNIYLTKRIKRR 60
             MPA+KK SD + +G  F+KLL QIG   EFELP+W  K K  PY+FI+RNIYLTK++KRR
Sbjct:     1 MPASKKISDRNHLGQVFDKLLNQIGESEEFELPEWLNKGKPTPYIFIRRNIYLTKKVKRR 60

Query:    61 LEDDGIFCSCTAS-PGSSG-VCDRDCHXXXXXXXXXXXXXXXXXXXNKPFQNRPVKKMKL 118
             +EDDGIFCSC++S PGSS  VC  +CH                   NKPFQ R VKKMKL
Sbjct:    61 VEDDGIFCSCSSSSPGSSSTVCGSNCHCGMLFSSCSSSCKCGSECNNKPFQQRHVKKMKL 120

Query:   119 VQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMV 178
             +QTEKCG+GIVA+E+I+ GEF+IEYVGEVIDD+TCEERLWKMKH GETNFYLCEI RDMV
Sbjct:   121 IQTEKCGSGIVAEEEIEAGEFIIEYVGEVIDDKTCEERLWKMKHRGETNFYLCEITRDMV 180

Query:   179 IDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQY 232
             IDAT+KGNKSRYINHSC PNT+MQKWIIDGETRIGIFATR IKKGE+LTYDYQ+
Sbjct:   181 IDATHKGNKSRYINHSCNPNTQMQKWIIDGETRIGIFATRGIKKGEHLTYDYQF 234
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0016279 "protein-lysine N-methyltransferase activity" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2080462 ASHH4 "histone-lysine N-methyltransferase ASHH4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126714 SDG4 "SET domain group 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0268132 DDB_G0268132 "SET domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1MMY4 WHSC1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S8S0 WHSC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|D4A3R4 Whsc1l1 "Protein Whsc1l1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1308980 Whsc1l1 "Wolf-Hirschhorn syndrome candidate 1-like 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0030486 Set2 "Set2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:2142581 Whsc1l1 "Wolf-Hirschhorn syndrome candidate 1-like 1 (human)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q945S8ASHH3_ARATH2, ., 1, ., 1, ., 4, 30.75210.95470.6391yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1.430.946
3rd Layer2.1.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query243
smart00317124 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest 6e-47
pfam00856113 pfam00856, SET, SET domain 3e-33
COG2940480 COG2940, COG2940, Proteins containing SET domain [ 8e-17
smart0057050 smart00570, AWS, associated with SET domains 2e-12
>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information 
 Score =  151 bits (384), Expect = 6e-47
 Identities = 56/124 (45%), Positives = 79/124 (63%)

Query: 114 KKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEI 173
            K+++ ++   G G+ A EDI +GEF+ EYVGE+I  +  EER       G   FYL +I
Sbjct: 1   NKLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERPKAYDTDGAKAFYLFDI 60

Query: 174 NRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQYE 233
           + D+ IDA  KGN +R+INHSC PN E+    ++G+ RI IFA RDIK GE LT DY  +
Sbjct: 61  DSDLCIDARRKGNLARFINHSCEPNCELLFVEVNGDDRIVIFALRDIKPGEELTIDYGSD 120

Query: 234 FLHD 237
           + ++
Sbjct: 121 YANE 124

Putative methyl transferase, based on outlier plant homologues. Length = 124
>gnl|CDD|216155 pfam00856, SET, SET domain Back     alignment and domain information
>gnl|CDD|225491 COG2940, COG2940, Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|197795 smart00570, AWS, associated with SET domains Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 243
KOG4442 729 consensus Clathrin coat binding protein/Huntingtin 100.0
KOG1082364 consensus Histone H3 (Lys9) methyltransferase SUV3 100.0
KOG1079739 consensus Transcriptional repressor EZH1 [Transcri 99.98
KOG10801005 consensus Histone H3 (Lys4) methyltransferase comp 99.97
smart00317116 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) 99.96
KOG10831306 consensus Putative transcription factor ASH1/LIN-5 99.93
KOG1141 1262 consensus Predicted histone methyl transferase [Ch 99.92
KOG1085392 consensus Predicted methyltransferase (contains a 99.87
COG2940480 Proteins containing SET domain [General function p 99.74
PF00856162 SET: SET domain; InterPro: IPR001214 The SET domai 99.73
KOG2589 453 consensus Histone tail methylase [Chromatin struct 99.39
KOG1081463 consensus Transcription factor NSD1 and related SE 99.31
smart0057051 AWS associated with SET domains. subdomain of PRES 99.11
KOG2461 396 consensus Transcription factor BLIMP-1/PRDI-BF1, c 98.89
PF05033103 Pre-SET: Pre-SET motif; InterPro: IPR007728 This r 98.88
smart0046898 PreSET N-terminal to some SET domains. A Cys-rich 98.38
KOG1081 463 consensus Transcription factor NSD1 and related SE 98.02
KOG11411262 consensus Predicted histone methyl transferase [Ch 97.46
KOG1337 472 consensus N-methyltransferase [General function pr 91.61
KOG2084 482 consensus Predicted histone tail methylase contain 91.14
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=5e-52  Score=383.90  Aligned_cols=205  Identities=39%  Similarity=0.768  Sum_probs=190.1

Q ss_pred             CCCCCcEEcccceeccccccccCCCCCCccccCCCCC----CCCCCCCCCCccceeecCCC-CCC-CCCCCCCcccccCC
Q 026129           39 PKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPG----SSGVCDRDCHCGMLLSSCSS-GCK-CGNSCLNKPFQNRP  112 (243)
Q Consensus        39 ~~p~~f~~i~~n~~~~~~~~~~~~~~~~~C~C~~~~~----~~~~C~~~C~c~~~~~eC~~-~C~-c~~~C~Nr~~q~~~  112 (243)
                      ..|..|.-+..++|.....+.....+.+.|+|...-+    ..+.|+.+|.|+++..||++ .|. |+..|.|+.||+..
T Consensus        39 e~~~~f~~~~e~~y~~krk~~~ee~~~m~Cdc~~~~~d~~n~~~~cg~~CiNr~t~iECs~~~C~~cg~~C~NQRFQkkq  118 (729)
T KOG4442|consen   39 EALTKFENLDEKFYANKRKKKKEENDEMICDCKPKTGDGANGACACGEDCINRMTSIECSDRECPRCGVYCKNQRFQKKQ  118 (729)
T ss_pred             ccchhhhhhhhhhhHHhhccCcccCcceeeecccccccccccccccCccccchhhhcccCCccCCCccccccchhhhhhc
Confidence            4566788888888877765554444677899998543    35678999999999999999 899 99999999999999


Q ss_pred             ccceEEEEecCCCcEEEecccCCCCceEEEeceeeeCHHHHHHHHHHhhhcCCcceeeeeecccceecccccCCcccccC
Q 026129          113 VKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYIN  192 (243)
Q Consensus       113 ~~~l~v~~s~~kG~Gv~A~~~I~~G~~I~ey~Gevi~~~~~~~r~~~~~~~~~~~~y~~~~~~~~~iDa~~~Gn~~RfiN  192 (243)
                      ..+++||.|+++||||+|.++|++|+||+||.||||+..+++.|...|...+..++|+|.+..+.+|||+.+||++||||
T Consensus       119 yA~vevF~Te~KG~GLRA~~dI~~g~FI~EY~GEVI~~~Ef~kR~~~Y~~d~~kh~Yfm~L~~~e~IDAT~KGnlaRFiN  198 (729)
T KOG4442|consen  119 YAKVEVFLTEKKGCGLRAEEDIPKGQFILEYIGEVIEEKEFEKRVKRYAKDGIKHYYFMALQGGEYIDATKKGNLARFIN  198 (729)
T ss_pred             cCceeEEEecCcccceeeccccCCCcEEeeeccccccHHHHHHHHHHHHhcCCceEEEEEecCCceecccccCcHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceeEEEEECCeEEEEEEEcCCCCCCCeEEEecCCCcCCC-CCcccC
Q 026129          193 HSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQYEFLHD-SLIAYC  243 (243)
Q Consensus       193 HSC~PN~~~~~~~~~~~~~i~i~A~rdI~~GEELt~dY~~~~~~~-~~~C~C  243 (243)
                      |||+|||.+++|.+++..||+|||.|.|.+||||||||++++++. +|+|+|
T Consensus       199 HSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf~rYGr~AQ~CyC  250 (729)
T KOG4442|consen  199 HSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQFDRYGRDAQPCYC  250 (729)
T ss_pred             CCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEeccccccccccccccc
Confidence            999999999999999999999999999999999999999999987 699999

>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription] Back     alignment and domain information
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription] Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] Back     alignment and domain information
>COG2940 Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco Back     alignment and domain information
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] Back     alignment and domain information
>smart00570 AWS associated with SET domains Back     alignment and domain information
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription] Back     alignment and domain information
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain Back     alignment and domain information
>smart00468 PreSET N-terminal to some SET domains Back     alignment and domain information
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1337 consensus N-methyltransferase [General function prediction only] Back     alignment and domain information
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query243
3ooi_A232 Crystal Structure Of Human Histone-Lysine N-Methylt 2e-28
4fmu_A278 Crystal Structure Of Methyltransferase Domain Of Hu 2e-27
3ope_A222 Structural Basis Of Auto-Inhibitory Mechanism Of Hi 6e-23
2w5y_A192 Binary Complex Of The Mixed Lineage Leukaemia (Mll1 2e-16
2r3a_A300 Methyltransferase Domain Of Human Suppressor Of Var 6e-14
3hna_A287 Crystal Structure Of Catalytic Domain Of Human Euch 7e-14
2igq_A285 Human Euchromatic Histone Methyltransferase 1 Lengt 7e-14
3fpd_A261 G9a-Like Protein Lysine Methyltransferase Inhibitio 1e-13
3k5k_A283 Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazolin 1e-13
2o8j_A281 Human Euchromatic Histone Methyltransferase 2 Lengt 1e-13
4i51_A286 Methyltransferase Domain Of Human Euchromatic Histo 6e-13
3bo5_A290 Crystal Structure Of Methyltransferase Domain Of Hu 3e-12
2bqz_A161 Crystal Structure Of A Ternary Complex Of The Human 1e-11
1zkk_A167 Crystal Structure Of Hset8 In Ternary Complex With 1e-11
3f9z_A166 Structural Insights Into Lysine Multiple Methylatio 3e-11
3f9w_A166 Structural Insights Into Lysine Multiple Methylatio 3e-11
4ij8_A165 Crystal Structure Of The Complex Of Setd8 With Sam 1e-10
1ml9_A302 Structure Of The Neurospora Set Domain Protein Dim- 1e-10
1mvh_A299 Structure Of The Set Domain Histone Lysine Methyltr 7e-08
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine N-Methyltransferase Nsd1 Set Domain In Complex With S-Adenosyl-L-Methionine Length = 232 Back     alignment and structure 
Iteration: 1

 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/134 (43%), Positives = 88/134 (65%)
Query: 105 NKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLG 164
           N+ F  R   ++++ +T + G G+    DIK+GEFV EYVGE+ID++ C  R+   +   
Sbjct: 83  NQCFSKRQYPEVEIFRTLQRGWGLRTKTDIKKGEFVNEYVGELIDEEECRARIRYAQEHD 142
Query: 165 ETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGE 224
            TNFY+  +++D +IDA  KGN +R++NH C PN E QKW ++G+TR+G+FA  DIK G 
Sbjct: 143 ITNFYMLTLDKDRIIDAGPKGNYARFMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGT 202
Query: 225 NLTYDYQYEFLHDS 238
            LT++Y  E L + 
Sbjct: 203 ELTFNYNLECLGNG 216
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set Domain- Containing Protein 2 Compound: Pr-Snf Length = 278 Back     alignment and structure
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone Methyltransferase Length = 222 Back     alignment and structure
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set Domain With The Cofactor Product S-Adenosylhomocysteine. Length = 192 Back     alignment and structure
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of Variegation 3-9 Homolog 2 Length = 300 Back     alignment and structure
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic Histone Methyltransferase 1 In Complex With Sah And Mono- Methylated H3k9 Peptide Length = 287 Back     alignment and structure
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1 Length = 285 Back     alignment and structure
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix- 01294 Length = 261 Back     alignment and structure
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A Potent Inhibitor Of Histone Lysine Methyltransferase, G9a Length = 283 Back     alignment and structure
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2 Length = 281 Back     alignment and structure
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone Methyltransferase 1, Mutant Y1211a Length = 286 Back     alignment and structure
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Histone-Lysine N-Methyltransferase Setmar Length = 290 Back     alignment and structure
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human Histone Methyltransferase Pr-Set7 (Also Known As Set8) Length = 161 Back     alignment and structure
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4 Peptide (16-24) And Adohcy Length = 167 Back     alignment and structure
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y245f H4-Lys20 ADOHCY Length = 166 Back     alignment and structure
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY Length = 166 Back     alignment and structure
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam Length = 165 Back     alignment and structure
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A Histone Lysine Methyltransferase Length = 302 Back     alignment and structure
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase Clr4 Length = 299 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query243
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 1e-80
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 8e-80
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 3e-74
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 1e-64
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 4e-63
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 5e-62
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 3e-61
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 2e-59
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 5e-58
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 2e-56
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 7e-33
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 7e-32
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 5e-31
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 1e-27
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 9e-20
3dal_A196 PR domain zinc finger protein 1; methyltransferase 1e-15
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 3e-15
3db5_A151 PR domain zinc finger protein 4; methyltransferase 5e-15
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 6e-15
3ray_A237 PR domain-containing protein 11; structural genomi 1e-08
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 2e-05
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 7e-05
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 7e-05
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232 Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Length = 222 Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Length = 192 Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* Length = 166 Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Length = 299 Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Length = 290 Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Length = 300 Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Length = 287 Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Length = 302 Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119 Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261 Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Length = 273 Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Length = 247 Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Length = 149 Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Length = 196 Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Length = 170 Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Length = 151 Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Length = 152 Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Length = 237 Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query243
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 100.0
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 100.0
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 100.0
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 100.0
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 100.0
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 100.0
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 100.0
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 100.0
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 100.0
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 100.0
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 99.97
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 99.97
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 99.96
1h3i_A293 Histone H3 lysine 4 specific methyltransferase; 2. 99.96
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 99.94
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 99.93
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 99.89
3db5_A151 PR domain zinc finger protein 4; methyltransferase 99.88
3dal_A196 PR domain zinc finger protein 1; methyltransferase 99.85
3ray_A237 PR domain-containing protein 11; structural genomi 99.75
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 99.71
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 99.34
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 99.02
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 98.91
3qxy_A 449 N-lysine methyltransferase SETD6; epigenetics, pro 97.61
2h21_A 440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 97.43
3smt_A 497 Histone-lysine N-methyltransferase SETD3; histone 97.1
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 92.72
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 90.79
3smt_A 497 Histone-lysine N-methyltransferase SETD3; histone 85.13
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Back     alignment and structure
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Back     alignment and structure
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Back     alignment and structure
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 243
d1mvha_269 b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S 9e-39
d2f69a2171 b.85.7.1 (A:194-364) Histone H3 K4-specific methyl 9e-37
d1ml9a_284 b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T 1e-34
d2g46a1119 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth 6e-19
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269 Back     information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: SET domain of Clr4
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score =  133 bits (335), Expect = 9e-39
 Identities = 50/226 (22%), Positives = 88/226 (38%), Gaps = 30/226 (13%)

Query: 38  KPKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGSSGVCDRDCHC----------- 86
              ++ + FI +    T+ +     +    C+C++  G        C C           
Sbjct: 39  PCPSLDFQFISQYRL-TQGVIPPDPNFQSGCNCSSLGGCDLNNPSRCECLDDLDEPTHFA 97

Query: 87  -----------GMLLSSCSSGCKCGNSCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIK 135
                      G ++  C+S C C   C N+  Q      +++ +T++ G G+ +     
Sbjct: 98  YDAQGRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAP 157

Query: 136 RGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRD---MVIDATYKGNKSRYIN 192
            G F+  Y+GEVI      +R       G T  +  ++  D     +DA   G+ SR+ N
Sbjct: 158 AGTFITCYLGEVITSAEAAKRDKNYDDDGITYLFDLDMFDDASEYTVDAQNYGDVSRFFN 217

Query: 193 HSCCPNTEMQKWIIDGET----RIGIFATRDIKKGENLTYDYQYEF 234
           HSC PN  +   + +        +  FA +DI+  E LT+DY    
Sbjct: 218 HSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAK 263
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171 Back     information, alignment and structure
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284 Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query243
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 100.0
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 100.0
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 99.96
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 99.95
d2h2ja2261 RuBisCo LSMT catalytic domain {Garden pea (Pisum s 99.14
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: SET domain of Clr4
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=4.1e-51  Score=351.56  Aligned_cols=222  Identities=25%  Similarity=0.406  Sum_probs=173.8

Q ss_pred             hHHHHHHHHHHHhCCCeeecCCCccCCCC-C-CCcEEcccceeccccccccCCCCCCccccCCCCCCCCCCCCCCCc---
Q 026129           12 RIGHAFNKLLKQIGNPVEFELPDWFIKPK-A-IPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGSSGVCDRDCHC---   86 (243)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-p-~~f~~i~~n~~~~~~~~~~~~~~~~~C~C~~~~~~~~~C~~~C~c---   86 (243)
                      ..|+++.+.++.+ +..++++-++++... | ..|+||.++++.... .........+|+|...++....|...|.|   
T Consensus        12 ~~~~~~~~~~~~~-~~~pi~~~N~vD~~~~P~~~F~yi~~~~~~~~~-~~~~~~~~~gC~C~~~~~C~~~~~~~C~C~~~   89 (269)
T d1mvha_          12 EKRELFRKKLREI-EGPEVTLVNEVDDEPCPSLDFQFISQYRLTQGV-IPPDPNFQSGCNCSSLGGCDLNNPSRCECLDD   89 (269)
T ss_dssp             HHHHHHHHHHHTS-SSSCEEEECSSCCCCCSCCCSEECSSCEECTTC-CCCCGGGCCCCCCCCSSSSCTTCTTTCSSSTT
T ss_pred             HHHHHHHHHHhhC-CCCCcEEEeCCCCCCCCCCCcEEeeccccCCCC-CcCCccccCCCCCCCCCCcCCCCCcceecccc
Confidence            3455565555554 566777778887654 3 369999998887553 23333456789888643322111222332   


Q ss_pred             -------------------cceeecCCCCCCCCCCCCCcccccCCccceEEEEecCCCcEEEecccCCCCceEEEeceee
Q 026129           87 -------------------GMLLSSCSSGCKCGNSCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEV  147 (243)
Q Consensus        87 -------------------~~~~~eC~~~C~c~~~C~Nr~~q~~~~~~l~v~~s~~kG~Gv~A~~~I~~G~~I~ey~Gev  147 (243)
                                         ..+++||++.|+|+..|.||++|++...+|+|++|+.+||||||+++|++|++|+||.|++
T Consensus        90 ~~~~~~~~~~~~~rl~~~~~~~i~EC~~~C~C~~~C~Nr~~q~g~~~~leV~~t~~~G~GvfA~~~I~kGt~I~eY~Gev  169 (269)
T d1mvha_          90 LDEPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEV  169 (269)
T ss_dssp             CCSSCCCSBCTTSSBCTTCCSEEECCCTTSCSCTTCTTCTGGGCCCSCEEEEECSSSSEEEEESSCBCTTCEEEECCCEE
T ss_pred             cCCCCccccccCCccccCcCCeEEECCCCCCCCCCCCCeecCCCCccCEEEEEcCCCCeEEEeCcccCCCceEEEecceE
Confidence                               1247999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCHHHHHHHHHHhhhcCCcceeeeee-----cccceecccccCCcccccCCCCCCCceeEEEEECC----eEEEEEEEcC
Q 026129          148 IDDQTCEERLWKMKHLGETNFYLCEI-----NRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDG----ETRIGIFATR  218 (243)
Q Consensus       148 i~~~~~~~r~~~~~~~~~~~~y~~~~-----~~~~~iDa~~~Gn~~RfiNHSC~PN~~~~~~~~~~----~~~i~i~A~r  218 (243)
                      ++..++++|...+......  |++.+     ...++|||+..||++|||||||+||+.++.|++++    .++|+|||+|
T Consensus       170 i~~~e~~~R~~~y~~~~~~--~~~~l~~~~~~~~~~iDa~~~GN~aRFiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~r  247 (269)
T d1mvha_         170 ITSAEAAKRDKNYDDDGIT--YLFDLDMFDDASEYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIK  247 (269)
T ss_dssp             EEHHHHHHHHTTCCSCSCC--CEEEECSSCSSSCEEEECSSEECGGGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESS
T ss_pred             EcHHHHHHHHHhHhhcCCc--chhheecccccccceeeeeecCcceEEeecCCCCCcEEEEEEecCCcCccceEEEEECC
Confidence            9999999987665544433  44444     34689999999999999999999999999988764    4789999999


Q ss_pred             CCCCCCeEEEecCCCcCCC
Q 026129          219 DIKKGENLTYDYQYEFLHD  237 (243)
Q Consensus       219 dI~~GEELt~dY~~~~~~~  237 (243)
                      ||++|||||||||+.....
T Consensus       248 dI~~GEELt~DYG~~~d~~  266 (269)
T d1mvha_         248 DIQPLEELTFDYAGAKDFS  266 (269)
T ss_dssp             CBCTTCBCEECCCTTSSSS
T ss_pred             ccCCCCEEEEecCCCcCCC
Confidence            9999999999999866543
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure