Citrus Sinensis ID: 026135

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
MKKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEPAVPVAAAQSATTAAPADVAAAAAAAATTTTTISFSAAAAAKEDIKREKRTIGFVCKNEKQPYHHHNHHRHRQQQQVIVKEEEVTCPDLNLELRISPPSSADLHQQQPLIKTGGRSSSLCLACSLGLQNSKGCSCNNNNNNNTNSMISSSNTSSSSSSSTCYDFLGLKSGVLDYRSLEMK
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHHcccccHHHHccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccEEEEEEEccccccccEEcccccccccccEEEEccccccccccccccHcccccccEcccccccc
Coil and Loop (DISEMBL)
mkkmnslsNSIASLVTSksswsliagrlpgrtdneiKNYWNTHIRRKLLnrgidpathrplnepavpvaaaqsattaaPADVAAAAAAAATTTTTISFSAAAAAKEDIKREKRTigfvcknekqpyhhhnhhrhrqQQQVIVkeeevtcpdlnlelrisppssadlhqqqpliktggrssslclacslglqnskgcscnnnnnnntnsmisssntssssssstcydflglksgvldyRSLEMK
Flexible Loop (DISEMBL)
mkkmnslsNSIASLvtsksswsliagrlpgrtdneiknYWNTHIRRKLLNRGIDPATHRPLNEPAVPVAAAQSATTAAPADVAAAAAAAATTTTTISFSAAAAAKEDIKREKRTIGFVCKNEKQPYHHHNHHRHRQQQQVIVKEEEVTCPDLNLELRISPPSSADLHQQQPLIKTGGRSSSLCLACSLGLQNSKGCSCNNNNNNNTNSMISSSNTSSSSSSSTCYDFLglksgvldyrslemk
Low Complexity Region (SEG)
MKKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEpavpvaaaqsattaapadvaaaaaaaatttttisfsaaaaaKEDIKREKRTIGFVCKNEKQPYhhhnhhrhrqqqqvivkeeevTCPDLNLELRISPPSSADLHQQQPLIKTggrssslclacslglQnskgcscnnnnnnntnsmisssntssssssstcYDFLGLKSGVLDYRSLEMK
Disordered region (IsUnstruct)
*******************SWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGID******************************AAAAAATTTTTISFSAAAA********KRTIGFVCKN*******************IV****VTCPDL*****************************LCLACSLG******************************************************
Disordered Region (DISOPRED)
***MNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLN**************************************************************************************************CPDLNLELR*************************CLACSLGLQNSKG****************************CYDFLGLKSGVLDYRSLEM*
Disordered Region (DISEMBL)
***********ASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEPAV**************************TTTISFSAAAAAKEDIKREKRTIGFVCKNEKQ****************IVKEEEVTCPDLNLELRISPPSSADLHQQQPLIKTGGRSSSLCLACSLGLQNSKGCSCNNNNNNNTNSM**************CYDFLGLKSGVLDYRSLEMK
Disordered Region (DISPRO)
MKKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHR***************************************************************************************VTCPDLNLELRISPPSS***************SSSLCLACSLGLQNSKGCSCNNNNNNNTNSMISSSNTSSSSSSSTCYDFLGLKSGVLDYRSL***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEPAVPVAAAQSATTAAPADVAAAAAAAATTTTTISFSAAAAAKEDIKREKRTIGFVCKNEKQPYHHHNHHRHRQQQQVIVKEEEVTCPDLNLELRISPPSSADLHQQQPLIKTGGRSSSLCLACSLGLQNSKGCSCNNNNNNNTNSMISSSNTSSSSSSSTCYDFLGLKSGVLDYRSLEMK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	243	2.2.26 [Sep-21-2011]
P81393	232	Myb-related protein 308 O	N/A	no	0.600	0.629	0.44	4e-36
O49608	274	Transcription factor MYB3	yes	no	0.818	0.726	0.420	2e-33
Q9SZP1	282	Transcription repressor M	no	no	0.814	0.702	0.385	2e-32
P20026	267	Myb-related protein Hv1 O	N/A	no	0.769	0.700	0.363	3e-30
P20025	255	Myb-related protein Zm38	N/A	no	0.674	0.643	0.335	1e-25
Q9S9K9	257	Transcription factor MYB3	no	no	0.654	0.618	0.336	8e-18
Q38851	236	Transcription repressor M	no	no	0.209	0.216	0.754	8e-17
Q38850	249	Transcription repressor M	no	no	0.362	0.353	0.422	8e-17
P81395	274	Myb-related protein 330 O	N/A	no	0.205	0.182	0.75	6e-16
Q8GWP0	360	Transcription factor MYB3	no	no	0.238	0.161	0.603	3e-14

>sp|P81393|MYB08_ANTMA Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1

 Score =  151 bits (381), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/200 (44%), Positives = 111/200 (55%), Gaps = 54/200 (27%)

Query: 11  IASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEPAVPVAA 70
           + SL+ +K  WSLIAGRLPGRTDNEIKNYWNTHIRRKLL+RGIDP THR +N+       
Sbjct: 81  LHSLLGNK--WSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPTTHRSIND------- 131

Query: 71  AQSATTAAPADVAAAAAAAATTTTTISFSAAAAAKEDIKREKRTIGFVCKNEKQPYHHHN 130
                            A+    TTISFS A + +ED K                     
Sbjct: 132 ---------------GTASQDQVTTISFSNANSKEEDTK--------------------- 155

Query: 131 HHRHRQQQQVIVKEE----EVTCPDLNLELRISPPSSADLHQQQPLIKTGGR--SSSLCL 184
              H+    +++KEE    +  CPDLNL+L+ISPP    ++  Q  +KTGGR  SS+LC 
Sbjct: 156 ---HKVAVDIMIKEENSPVQERCPDLNLDLKISPPCQQQINYHQENLKTGGRNGSSTLCF 212

Query: 185 ACSLGLQNSKGCSCNNNNNN 204
            C LG+QNSK CSC++   N
Sbjct: 213 VCRLGIQNSKDCSCSDGVGN 232

Transcription factor.
Antirrhinum majus (taxid: 4151)

>sp|O49608|MYB32_ARATH Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1

 Score =  142 bits (359), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/240 (42%), Positives = 122/240 (50%), Gaps = 41/240 (17%)

Query: 5   NSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEP 64
           + L   + SL+ +K  WSLIA RLPGRTDNEIKNYWNTH++RKLL +GIDPATHRP+NE 
Sbjct: 75  DDLIIKLHSLLGNK--WSLIATRLPGRTDNEIKNYWNTHVKRKLLRKGIDPATHRPINET 132

Query: 65  AVPVAAAQSATTAAPADVAAAAAAAATTTTTISFSAAAAAKEDIKREKRTIGFVCKNEKQ 124
                ++ S+ T  P                +SF                         Q
Sbjct: 133 KTSQDSSDSSKTEDPL------------VKILSFGP-----------------------Q 157

Query: 125 PYHHHNHHRHRQQQQVIVKEEEVTCPDLNLELRISPPSSADLHQQQPLIKTGGRSSSLCL 184
                N    R Q++V     E  C DLNLELRISPP    LH ++ L    GR    C 
Sbjct: 158 LEKIANFGDERIQKRVEYSVVEERCLDLNLELRISPPWQDKLHDERNL--RFGRVKYRCS 215

Query: 185 ACSLGLQNSKGCSCNNNNNNNTNSMISSSNTSSSSSSSTCYDFLGL-KSGVLDYRSLEMK 243
           AC  G  N K CSC NN    T    SSS +S+  SSS  YDFLGL  + VLD+ +LEMK
Sbjct: 216 ACRFGFGNGKECSC-NNVKCQTEDSSSSSYSSTDISSSIGYDFLGLNNTRVLDFSTLEMK 274

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1

 Score =  139 bits (349), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/249 (38%), Positives = 125/249 (50%), Gaps = 51/249 (20%)

Query: 5   NSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEP 64
           + L   + SL+ +K  WSLIAGRLPGRTDNEIKNYWNTHIRRKL+NRGIDP +HRP+ E 
Sbjct: 75  DELIIKLHSLLGNK--WSLIAGRLPGRTDNEIKNYWNTHIRRKLINRGIDPTSHRPIQE- 131

Query: 65  AVPVAAAQSATTAAPADVAAAAAAAATTTTTISFSAAAAAKEDIKREKRTIGFVCKNEKQ 124
                 + ++  + P  +         T+ TI+ S  +A K +   E  +I F  K+EK 
Sbjct: 132 ------SSASQDSKPTQLEPV------TSNTINISFTSAPKVETFHE--SISFPGKSEK- 176

Query: 125 PYHHHNHHRHRQQQQVIVKEEEVTC------PDLNLELRISPPSSADLHQQQPLIKTGGR 178
                          +  KEE+  C      PDLNLELRIS P   D  Q       G  
Sbjct: 177 ------------ISMLTFKEEKDECPVQEKFPDLNLELRISLPDDVDRLQGH-----GKS 219

Query: 179 SSSLCLACSLGLQNSKGCSCNNNNNNNTNSMISSSNTSSSSSSSTCYDFLGL----KSGV 234
           ++  C  CSLG+ N   C C     +          +S  S  S  +DFLGL     + +
Sbjct: 220 TTPRCFKCSLGMINGMECRCGRMRCDVV------GGSSKGSDMSNGFDFLGLAKKETTSL 273

Query: 235 LDYRSLEMK 243
           L +RSLEMK
Sbjct: 274 LGFRSLEMK 282

Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate.

Arabidopsis thaliana (taxid: 3702)

>sp|P20026|MYB1_HORVU Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1

 Score =  132 bits (331), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/245 (36%), Positives = 117/245 (47%), Gaps = 58/245 (23%)

Query: 5   NSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEP 64
           + L   + SL+ +K  WSLIAGRLPGRTDNEIKNYWNTHIRRKL +RGIDP THR +N  
Sbjct: 75  DELIIKLHSLLGNK--WSLIAGRLPGRTDNEIKNYWNTHIRRKLTSRGIDPVTHRAIN-- 130

Query: 65  AVPVAAAQSATTAAPADVAAAAAAAATTTTTISF-SAAAAAKEDIKREKRTIGFVCKNEK 123
                                 +  A +  TISF SA    K  + R             
Sbjct: 131 ----------------------SDHAASNITISFESAQRDDKGAVFRRDAEPAKAAAAAA 168

Query: 124 QPYHHHNHHRHRQQQQVIVKEEEVTCPDLNLELRISPPSSAD-LHQQQPLIK----TGGR 178
              HH +HH     Q    + + + CPDLNL+L ISPP   D +   +P++K     G  
Sbjct: 169 AISHHVDHHHRSNPQLDWGQGKPLKCPDLNLDLCISPPIHEDPMVDTKPVVKREAGVGVG 228

Query: 179 SSSLCLACSLGLQNSKGCSCNNNNNNNTNSMISSSNTSSSSSSSTCYDFLGLKSGVLDYR 238
              LC +CS+GL  S  C C++                          F+GL++ +LD+R
Sbjct: 229 VVGLCFSCSMGLPRSSDCKCSS--------------------------FMGLRTAMLDFR 262

Query: 239 SLEMK 243
           S+EMK
Sbjct: 263 SIEMK 267

Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.

Hordeum vulgare (taxid: 4513)

>sp|P20025|MYB38_MAIZE Myb-related protein Zm38 OS=Zea mays PE=2 SV=1

 Score =  117 bits (292), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/256 (33%), Positives = 111/256 (43%), Gaps = 92/256 (35%)

Query: 5   NSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEP 64
           + L   + SL+ +K  WSLIA RLPGRTDNEIKNYWNTH+RRKLL RGIDP THRP+   
Sbjct: 75  DDLIVKLHSLLGNK--WSLIAARLPGRTDNEIKNYWNTHVRRKLLGRGIDPVTHRPI--- 129

Query: 65  AVPVAAAQSATTAAPADVAAAAAAAATTTTTISFSAAAAAKEDIKREKRTIGFVCKNEKQ 124
                                 AA A T TT+SF  + +A                    
Sbjct: 130 ----------------------AADAVTVTTVSFQPSPSAAA------------------ 149

Query: 125 PYHHHNHHRHRQQQQVIVKEEEVTCPDLNLELRISPP------SSADLHQQQPLIK---- 174
                        +      +   CPDLNL+L ISPP         DL     ++K    
Sbjct: 150 ---------AAAAEAEATAAKAPRCPDLNLDLCISPPCQQQEEEEVDLKPSAAVVKREVL 200

Query: 175 ------TGGRSSSLCLACSLGLQ-NSKGCSCNNNNNNNTNSMISSSNTSSSSSSSTCYDF 227
                   G   +LC  CSLG+Q  + GCSC+++N +                       
Sbjct: 201 LGGRGHGHGHGGALCFGCSLGVQKGAPGCSCSSSNGHRC--------------------- 239

Query: 228 LGLKSGVLDYRSLEMK 243
           LGL+ G+LD+R L+MK
Sbjct: 240 LGLRGGMLDFRGLKMK 255

Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis.

Zea mays (taxid: 4577)

>sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1

 Score = 90.9 bits (224), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 98/205 (47%), Gaps = 46/205 (22%)

Query: 5   NSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEP 64
           + L   + SL+ +K  WSLIAGRLPGRTDNEIKNYWNTHI+RKLL+RGIDP +HR +NE 
Sbjct: 75  DELIIKLHSLLGNK--WSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRGIDPNSHRLINES 132

Query: 65  AVPVAAAQSATTAAPADVAAAAAAAATTTTTISFSAAAAAKEDIKREKRTIGFVCKNEKQ 124
            V  ++ Q+       DV            TI    +   K +  RE+  IG V   E  
Sbjct: 133 VVSPSSLQN-------DVVE----------TIHLDFSGPVKPEPVREE--IGMVNNCESS 173

Query: 125 PYHHHNHHRHRQQQQVIVKEEEVTCPDLNLELRISPPSSADLHQQQPLIKTGG------- 177
                        ++    EE+     LNLEL + P    +  ++  ++ +         
Sbjct: 174 GT---------TSEKDYGNEEDWV---LNLELSVGPSYRYESTRKVSVVDSAESTRRWGS 221

Query: 178 ------RSSSLCLACSLGLQNSKGC 196
                  S ++CL C +GL  ++ C
Sbjct: 222 ELFGAHESDAVCLCCRIGLFRNESC 246

Arabidopsis thaliana (taxid: 3702)

>sp|Q38851|MYB6_ARATH Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1

 Score = 87.4 bits (215), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 40/53 (75%), Positives = 46/53 (86%), Gaps = 2/53 (3%)

Query: 11  IASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNE 63
           + SL+ +K  WSLIAGRLPGRTDNEIKNYWNTHI+RKLL+ GIDP THR +NE
Sbjct: 81  LHSLLGNK--WSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHGIDPQTHRQINE 131

Arabidopsis thaliana (taxid: 3702)

>sp|Q38850|MYB5_ARATH Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1

 Score = 87.4 bits (215), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 41/97 (42%), Positives = 55/97 (56%), Gaps = 9/97 (9%)

Query: 21  WSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLN-----EPAVPVAAAQ--- 72
           WSLIAGR+PGRTDNEIKNYWNTH+R+KLL +GIDP TH+PL+     +P   V+  Q   
Sbjct: 100 WSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLDANNIHKPEEEVSGGQKYP 159

Query: 73  -SATTAAPADVAAAAAAAATTTTTISFSAAAAAKEDI 108
               +++  D          +  +I+        ED 
Sbjct: 160 LEPISSSHTDDTTVNGGDGDSKNSINVFGGEHGYEDF 196

Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8.

Arabidopsis thaliana (taxid: 3702)

>sp|P81395|MYB30_ANTMA Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 39/52 (75%), Positives = 45/52 (86%), Gaps = 2/52 (3%)

Query: 11  IASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLN 62
           + SL+ +K  WSLIAG LPGRTDNEIKNYWNTHI+RKL++RGIDP THR LN
Sbjct: 81  LHSLLGNK--WSLIAGALPGRTDNEIKNYWNTHIKRKLVSRGIDPQTHRSLN 130

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/58 (60%), Positives = 38/58 (65%)

Query: 21  WSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEPAVPVAAAQSATTAA 78
           WS IAG LPGRTDNEIKNYWNTH+R+KLL  GIDP TH P      P+        AA
Sbjct: 90  WSKIAGHLPGRTDNEIKNYWNTHMRKKLLQMGIDPVTHEPRTNDLSPILDVSQMLAAA 147

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
224080616	268	predicted protein [Populus trichocarpa]	0.781	0.708	0.497	7e-48
224103207	271	predicted protein [Populus trichocarpa]	0.810	0.726	0.506	1e-45
324022718	256	R2R3-MYB transcription factor [Prunus av	0.740	0.703	0.473	5e-44
302398923	255	MYB domain class transcription factor [M	0.732	0.698	0.471	7e-44
332656162	260	MYB transcription factor [Morus alba var	0.699	0.653	0.524	1e-43
429326618	269	MYB transcription factor [Populus toment	0.798	0.721	0.512	1e-43
255579979	266	r2r3-myb transcription factor, putative	0.786	0.718	0.516	2e-43
312222651	313	R2R3-MYB transcriptional factor [Dahlia	0.855	0.664	0.437	5e-43
13346194	264	GHMYB9 [Gossypium hirsutum] gi|207298825	0.769	0.708	0.491	7e-43
124430478	265	putative transcription factor [Humulus l	0.777	0.713	0.510	8e-43

>gi|224080616|ref|XP_002306180.1| predicted protein [Populus trichocarpa] gi|222849144|gb|EEE86691.1| predicted protein [Populus trichocarpa] gi|225626253|gb|ACN97176.1| MYB transcription factor [Populus trichocarpa]

 Score =  196 bits (498), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 121/243 (49%), Positives = 145/243 (59%), Gaps = 53/243 (21%)

Query: 5   NSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEP 64
           + L   + SL+ +K  WSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEP
Sbjct: 75  DELIIKLHSLLGNK--WSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEP 132

Query: 65  AVPVAAAQSATTAAPADVAAAAAAAATTTTTISFSAAAAAKEDIKREK--RTIGFVCKNE 122
           A                  A+   + +TTT++   + ++ KE+  +EK      F+CK E
Sbjct: 133 A----------------QEASTTISFSTTTSVKEESLSSVKEESNKEKIISAAAFICKEE 176

Query: 123 KQPYHHHNHHRHRQQQQVIVKEEEVTCPDLNLELRISPP--SSADLHQQQPLIKTGGRSS 180
           K P                       CPDLNLELRIS P  +  D HQ     KTGG S+
Sbjct: 177 KTPVQER-------------------CPDLNLELRISLPCQNQPDRHQA---FKTGG-ST 213

Query: 181 SLCLACSLGLQNSKGCSCNNNNNNNTNSMISSSNTSSSSSSSTCYDFLGLKSGVLDYRSL 240
           SLC ACSLGLQNSK CSC        + ++ +  +SSS+ S T YDFLG+KSGVLDYR L
Sbjct: 214 SLCFACSLGLQNSKDCSC--------SVIVGTIGSSSSAGSKTGYDFLGMKSGVLDYRGL 265

Query: 241 EMK 243
           EMK
Sbjct: 266 EMK 268

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103207|ref|XP_002312966.1| predicted protein [Populus trichocarpa] gi|222849374|gb|EEE86921.1| predicted protein [Populus trichocarpa] gi|225626255|gb|ACN97177.1| MYB transcription factor [Populus trichocarpa]

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 121/239 (50%), Positives = 140/239 (58%), Gaps = 42/239 (17%)

Query: 5   NSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEP 64
           + L   + SL+ +K  WSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEP
Sbjct: 75  DELIIKLHSLLGNK--WSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEP 132

Query: 65  AVPVAAAQSATTAAPADVAAAAAAAATTTTTISFSAAAAAKEDIKREKRTIGFVCKNEKQ 124
           AV  A    + T     V    +  +              +E+ ++      FVCK EK 
Sbjct: 133 AVQEATTTISFTTTTTSVLEEESLGSIIK-----------EENKEKIISATAFVCKEEKT 181

Query: 125 PYHHHNHHRHRQQQQVIVKEEEVTCPDLNLELRISPPSSADLHQQQPLIKTGGRSSSLCL 184
                      Q Q+         CPDLNLEL IS PS       QP  KTGG S SLC 
Sbjct: 182 -----------QVQE--------RCPDLNLELGISLPSQNQPDHHQPF-KTGG-SRSLCF 220

Query: 185 ACSLGLQNSKGCSCNNNNNNNTNSMISSSNTSSSSSSSTCYDFLGLKSGVLDYRSLEMK 243
           ACSLGLQNSK CSC        N ++S+  +S S+S+ T YDFLG+KSGVLDYRSLEMK
Sbjct: 221 ACSLGLQNSKDCSC--------NVIVSTVGSSGSTSTKTGYDFLGMKSGVLDYRSLEMK 271

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|324022718|gb|ADY15315.1| R2R3-MYB transcription factor [Prunus avium]

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 114/241 (47%), Positives = 138/241 (57%), Gaps = 61/241 (25%)

Query: 5   NSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEP 64
           + L   + SL+ +K  WSLIAGRLPGRTDNEIKNYWNTHIRRKLL RGIDP THR LNE 
Sbjct: 75  DELIIKLHSLLGNK--WSLIAGRLPGRTDNEIKNYWNTHIRRKLLTRGIDPTTHRALNE- 131

Query: 65  AVPVAAAQSATTAAPADVAAAAAAAATTTTTISFSAAAAAKEDIKREKRTIGFVCKNEKQ 124
                                 AA  + TTTISF+A+A  KE+ ++     G + K+ K+
Sbjct: 132 ----------------------AAQDSATTTISFAASANIKEEDQKSSIINGLLGKDSKK 169

Query: 125 PYHHHNHHRHRQQQQVIVKEEEVTCPDLNLELRISPPSSADLHQQQP--LIKTGGRSSSL 182
           P                       CPDLNLEL+ISPP       QQP   +K+GGR   +
Sbjct: 170 PVQER-------------------CPDLNLELQISPPC----QPQQPSEPLKSGGR--GV 204

Query: 183 CLACSLGLQNSKGCSCNNNNNNNTNSMISSSNTSSSSSSSTCYDFLGLKSGVLDYRSLEM 242
           C +CSLGLQ++K CSC  +        I SS TS +++    YDFLGLKSGVLDYRSLEM
Sbjct: 205 CFSCSLGLQDAKNCSCGIDT-------IGSSTTSGTTNVG--YDFLGLKSGVLDYRSLEM 255

Query: 243 K 243
           K
Sbjct: 256 K 256

Source: Prunus avium

Species: Prunus avium

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398923|gb|ADL36756.1| MYB domain class transcription factor [Malus x domestica]

 Score =  182 bits (463), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 114/242 (47%), Positives = 139/242 (57%), Gaps = 64/242 (26%)

Query: 5   NSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEP 64
           + L   + SL+ +K  WSLIAGRLPGRTDNEIKNYWNTHIRRKLL RGIDP THRPLNE 
Sbjct: 75  DELIIKLHSLLGNK--WSLIAGRLPGRTDNEIKNYWNTHIRRKLLTRGIDPTTHRPLNE- 131

Query: 65  AVPVAAAQSATTAAPADVAAAAAAAATTTTTISFSAAAA-AKEDIKREKRTIGFVCKNEK 123
                         P + A          TTISF+AA+A  KE+ K+   T G VCK+ K
Sbjct: 132 -------------TPQESA----------TTISFAAASANIKEEDKKISITNGLVCKDSK 168

Query: 124 QPYHHHNHHRHRQQQQVIVKEEEVTCPDLNLELRISPPSSADLHQQQP--LIKTGGRSSS 181
            P                       CPDLNL+L+ISPP       QQP   +K+GGR   
Sbjct: 169 NPVQER-------------------CPDLNLDLQISPPC----QPQQPSDGLKSGGR--G 203

Query: 182 LCLACSLGLQNSKGCSCNNNNNNNTNSMISSSNTSSSSSSSTCYDFLGLKSGVLDYRSLE 241
           LC +CSLGLQ++K CSC  +          +   ++S +++  YDFLGLK+GVLDYRSLE
Sbjct: 204 LCFSCSLGLQDAKNCSCGRD----------AIGGATSGTTNIGYDFLGLKNGVLDYRSLE 253

Query: 242 MK 243
           MK
Sbjct: 254 MK 255

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|332656162|gb|AEE81751.1| MYB transcription factor [Morus alba var. multicaulis]

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/225 (52%), Positives = 133/225 (59%), Gaps = 55/225 (24%)

Query: 21  WSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEPAVPVAAAQSATTAAPA 80
           WSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNE A               
Sbjct: 89  WSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNETA--------QDNTTTT 140

Query: 81  DVAAAAAAAATTTTTISFSAAAAAKEDIKREKRTI--GFVCKNEKQPYHHHNHHRHRQQQ 138
                 + AA+TTTTI           +K E++ I  GFV K+ K P          Q+Q
Sbjct: 141 PTTTTISFAASTTTTI-----------VKEEEKNINGGFVSKDVKNPV---------QEQ 180

Query: 139 QVIVKEEEVTCPDLNLELRISPPSSADLHQQQPLIKTGGRSSSLCLACSLGLQNSKGCSC 198
                     CPDLNLELRISPP      QQ   +K+GGR S  C +CSLGL NSK CSC
Sbjct: 181 ----------CPDLNLELRISPPYQP---QQPEQLKSGGRGS--CFSCSLGLPNSKECSC 225

Query: 199 NNNNNNNTNSMISSSNTSSSSSSSTCYDFLGLKSGVLDYRSLEMK 243
                      I +S  S+S+S+S  YDFLGLK+GVLDYRSLEMK
Sbjct: 226 G----------IITSIDSTSASTSVGYDFLGLKTGVLDYRSLEMK 260

Source: Morus alba var. multicaulis

Species: Morus alba

Genus: Morus

Family: Moraceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|429326618|gb|AFZ78649.1| MYB transcription factor [Populus tomentosa]

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/240 (51%), Positives = 141/240 (58%), Gaps = 46/240 (19%)

Query: 5   NSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEP 64
           + L   + SL+ +K  WSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEP
Sbjct: 75  DELIIKLHSLLGNK--WSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEP 132

Query: 65  AVPVAAAQSATTAAPADVAAAAAAAATTTTTISFSAAAAAKEDIKREKRT-IGFVCKNEK 123
                 AQ ATT         +    +  + I        KE+IK +  +   FVCK  K
Sbjct: 133 ------AQEATTTISFTTTTTSVEEESRGSII--------KEEIKEKLISATAFVCKEAK 178

Query: 124 QPYHHHNHHRHRQQQQVIVKEEEVTCPDLNLELRISPPSSADLHQQQPLIKTGGRSSSLC 183
                       Q Q+         CPDLNLEL IS PS       QP  KTGG S SLC
Sbjct: 179 T-----------QVQE--------RCPDLNLELGISLPSQNQPDHHQPF-KTGG-SRSLC 217

Query: 184 LACSLGLQNSKGCSCNNNNNNNTNSMISSSNTSSSSSSSTCYDFLGLKSGVLDYRSLEMK 243
            ACSLGLQNSK CSC        N ++S+  +S S+S+   YDFLG+KSGVLDYRSLEMK
Sbjct: 218 FACSLGLQNSKDCSC--------NVIVSTVGSSGSTSTKNGYDFLGMKSGVLDYRSLEMK 269

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579979|ref|XP_002530824.1| r2r3-myb transcription factor, putative [Ricinus communis] gi|223529616|gb|EEF31564.1| r2r3-myb transcription factor, putative [Ricinus communis]

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 124/240 (51%), Positives = 138/240 (57%), Gaps = 49/240 (20%)

Query: 5   NSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEP 64
           + L   + SL+ +K  WSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNE 
Sbjct: 75  DELIIKLHSLLGNK--WSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNE- 131

Query: 65  AVPVAAAQSATTAAPADVAAAAAAAATTTTTISFSAAAAAKEDIKREKRTIGFVCKNEKQ 124
                         P    A  A    TT TI+FS     KE I        F+CK E+ 
Sbjct: 132 --------------PTQETATTATTTATTNTITFSTIKEEKERISTPTTPSTFICKEEQN 177

Query: 125 PYHHHNHHRHRQQQQVIVKEEEVTCPDLNLELRIS-PPSSADLHQQQPLIKTGGRSSSLC 183
           P H                     CPDLNLELRIS P  S   H  +PL KTGGR   LC
Sbjct: 178 PVHER-------------------CPDLNLELRISLPYQSQQQHVVEPL-KTGGR--ILC 215

Query: 184 LACSLGLQNSKGCSCNNNNNNNTNSMISSSNTSSSSSSSTCYDFLGLKSGVLDYRSLEMK 243
            AC LGLQNSK CSC         S++ S   SSS +S++ YDFLG+KSGVLDYRSLEMK
Sbjct: 216 FACRLGLQNSKDCSC---------SIMGSGIGSSSGNSNSGYDFLGMKSGVLDYRSLEMK 266

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312222651|dbj|BAJ33514.1| R2R3-MYB transcriptional factor [Dahlia pinnata]

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 113/258 (43%), Positives = 141/258 (54%), Gaps = 50/258 (19%)

Query: 11  IASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEPAVPVAA 70
           + SL+ +K  WSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDP THRP+N+       
Sbjct: 81  LHSLLGNK--WSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPTTHRPVNDSPTNYPT 138

Query: 71  AQSATTAAPADVAAAAAAAATTTTTISFSAAAAAKEDIKREKRTIGFVCKNEKQPYHHHN 130
             + T             ++   TTISF+        + +E+         E +P H+ +
Sbjct: 139 TTTVTATT-TTNNNNNNNSSLDVTTISFANPPPTTHHLVKEEV--------EDEPKHNSD 189

Query: 131 HHRHRQQQQVIVKEEEVTCPDLNLELR---------------------ISPPSSADLHQQ 169
              HR+   V+ + +E  CPDLNLELR                     I P    + H  
Sbjct: 190 GSDHRKINSVLPEIQE-RCPDLNLELRMSPPHHSSSSSSSSSSSSSSHIHPQLQQENHYH 248

Query: 170 QPLIKTGGRS----SSLCLACSLGLQNSKGCSCNNNNNNNTNSMISSSNTSSSSSSSTCY 225
             L+KTGGRS    +++C ACSLG++NSK CSC NN N              +SSSST Y
Sbjct: 249 HQLLKTGGRSPPGGTNICFACSLGIENSKECSCTNNIN-------------GTSSSSTGY 295

Query: 226 DFLGLKSGVLDYRSLEMK 243
           DFLGLK+ VLDYRSLEMK
Sbjct: 296 DFLGLKTRVLDYRSLEMK 313

Source: Dahlia pinnata

Species: Dahlia pinnata

Genus: Dahlia

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13346194|gb|AAK19619.1|AF336286_1 GHMYB9 [Gossypium hirsutum] gi|207298825|gb|ACI23564.1| MYB-like protein 3 [Gossypium barbadense]

 Score =  179 bits (455), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 119/242 (49%), Positives = 144/242 (59%), Gaps = 55/242 (22%)

Query: 5   NSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEP 64
           + L   + SL+ +K  WSLIAGRLPGRTDNEIKNYWNTHIRRKLL+RGIDPATHRPLNE 
Sbjct: 75  DELIIKLHSLLGNK--WSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPATHRPLNE- 131

Query: 65  AVPVAAAQSATTAAPADVAAAAAAAATTTTTISFSAAAAAKEDIKREKRT--IGFVCKNE 122
                                   A+   TTISFS A   KE I        IGF+ K+E
Sbjct: 132 ------------------------ASQDVTTISFSGAKEEKEKINTNSNNNPIGFITKDE 167

Query: 123 KQPYHHHNHHRHRQQQQVIVKEEEVTCPDLNLELRISPPSSADLHQQQPL-IKTGGRSSS 181
           K               ++ V+E    CPDLNL+LRISPP      Q QP   KTGGR  +
Sbjct: 168 K---------------KIPVQER---CPDLNLDLRISPPY---YQQTQPESFKTGGR--T 204

Query: 182 LCLACSLGLQNSKGCSCNNNNNNNTNSMISSSNTSSSSSSSTCYDFLGLKSGVLDYRSLE 241
           LC  CSLG++NSK C+C  +         SSS++ S+S++S+ YDFLGLKSG+L+YRSLE
Sbjct: 205 LCFICSLGVKNSKDCTC--STITTAAGSSSSSSSHSNSNNSSGYDFLGLKSGILEYRSLE 262

Query: 242 MK 243
           MK
Sbjct: 263 MK 264

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124430478|dbj|BAF46265.1| putative transcription factor [Humulus lupulus]

 Score =  179 bits (454), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 123/241 (51%), Positives = 143/241 (59%), Gaps = 52/241 (21%)

Query: 5   NSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEP 64
           + L   + SL+ +K  WSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNE 
Sbjct: 75  DELIIKLHSLLGNK--WSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNES 132

Query: 65  AVPVAAAQSATTAAPADVAAAAAAAATTTTTISFSAAAAAKEDIKREKRTIGFVCKNEKQ 124
                   + TTA           A+ TTTTISF+A+      +K E++T          
Sbjct: 133 GQETTNTSTTTTAT----TTTTTTASNTTTTISFAAST-----VKEEEKTT--------- 174

Query: 125 PYHHHNHHRHRQQQQVIVKEEEVTCPDLNLELRISPPSSADLHQQ-QP-LIKTGGRSSSL 182
                          V++   +  CPDLNLELRISPP     HQQ QP  +K+GG  +SL
Sbjct: 175 --------------SVLLNPIQEQCPDLNLELRISPPYP---HQQRQPDQLKSGG--ASL 215

Query: 183 CLACSLGLQNSKGCSCNNNNNNNTNSMISSSNTSSSSSSSTCYDFLGLKSGVLDYRSLEM 242
           C ACSLGLQNSK C C             SS  S++ S+S  YDFLGLKSGVLDYRSLEM
Sbjct: 216 CFACSLGLQNSKECCCT-----------ISSMDSNNPSTSVGYDFLGLKSGVLDYRSLEM 264

Query: 243 K 243
           K
Sbjct: 265 K 265

Source: Humulus lupulus

Species: Humulus lupulus

Genus: Humulus

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
TAIR|locus:2059883	269	MYB7 "myb domain protein 7" [A	0.201	0.182	0.784	4.8e-30
TAIR|locus:2131576	274	MYB32 "myb domain protein 32"	0.201	0.178	0.784	2.5e-29
TAIR|locus:2121259	282	MYB4 "myb domain protein 4" [A	0.201	0.173	0.803	2.3e-27
TAIR|locus:2133677	236	MYB6 "myb domain protein 6" [A	0.201	0.207	0.784	2e-17
TAIR|locus:2009452	257	MYB3 "myb domain protein 3" [A	0.201	0.190	0.784	3.2e-17
TAIR|locus:2092820	249	MYB5 "myb domain protein 5" [A	0.172	0.168	0.809	1.8e-16
TAIR|locus:1005716764	212	HOS10 "high response to osmoti	0.185	0.212	0.8	2.3e-16
TAIR|locus:2132584	266	MYB85 "myb domain protein 85"	0.185	0.169	0.733	2.6e-15
TAIR|locus:2075387	321	MYB107 "myb domain protein 107	0.201	0.152	0.705	2.7e-15
TAIR|locus:2149000	336	MYB9 "myb domain protein 9" [A	0.201	0.145	0.705	3.4e-15

TAIR|locus:2059883 MYB7 "myb domain protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 4.8e-30, Sum P(3) = 4.8e-30
 Identities = 40/51 (78%), Positives = 46/51 (90%)

Query:    13 SLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNE 63
             SL+ +K  WSLIA RLPGRTDNEIKNYWNTHI+RKLL++GIDPATHR +NE
Sbjct:    83 SLLGNK--WSLIAARLPGRTDNEIKNYWNTHIKRKLLSKGIDPATHRGINE 131

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2131576 MYB32 "myb domain protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 2.5e-29, Sum P(3) = 2.5e-29
 Identities = 40/51 (78%), Positives = 46/51 (90%)

Query:    13 SLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNE 63
             SL+ +K  WSLIA RLPGRTDNEIKNYWNTH++RKLL +GIDPATHRP+NE
Sbjct:    83 SLLGNK--WSLIATRLPGRTDNEIKNYWNTHVKRKLLRKGIDPATHRPINE 131

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

TAIR|locus:2121259 MYB4 "myb domain protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 2.3e-27, Sum P(3) = 2.3e-27
 Identities = 41/51 (80%), Positives = 46/51 (90%)

Query:    13 SLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNE 63
             SL+ +K  WSLIAGRLPGRTDNEIKNYWNTHIRRKL+NRGIDP +HRP+ E
Sbjct:    83 SLLGNK--WSLIAGRLPGRTDNEIKNYWNTHIRRKLINRGIDPTSHRPIQE 131

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0010224 "response to UV-B" evidence=IEP;IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:2000762 "regulation of phenylpropanoid metabolic process" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

TAIR|locus:2133677 MYB6 "myb domain protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 40/51 (78%), Positives = 45/51 (88%)

Query:    13 SLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNE 63
             SL+ +K  WSLIAGRLPGRTDNEIKNYWNTHI+RKLL+ GIDP THR +NE
Sbjct:    83 SLLGNK--WSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHGIDPQTHRQINE 131

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2009452 MYB3 "myb domain protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 40/51 (78%), Positives = 46/51 (90%)

Query:    13 SLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNE 63
             SL+ +K  WSLIAGRLPGRTDNEIKNYWNTHI+RKLL+RGIDP +HR +NE
Sbjct:    83 SLLGNK--WSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRGIDPNSHRLINE 131

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0009800 "cinnamic acid biosynthetic process" evidence=TAS

GO:0009892 "negative regulation of metabolic process" evidence=TAS

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP;RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009739 "response to gibberellin stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2092820 MYB5 "myb domain protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 34/42 (80%), Positives = 40/42 (95%)

Query:    21 WSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLN 62
             WSLIAGR+PGRTDNEIKNYWNTH+R+KLL +GIDP TH+PL+
Sbjct:   100 WSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLD 141

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0009845 "seed germination" evidence=NAS

GO:0010026 "trichome differentiation" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010090 "trichome morphogenesis" evidence=IMP

GO:0010214 "seed coat development" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IEP

GO:0048354 "mucilage biosynthetic process involved in seed coat development" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:1005716764 HOS10 "high response to osmotic stress 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 36/45 (80%), Positives = 40/45 (88%)

Query:    19 SSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNE 63
             + WSLIAG+LPGRTDNEIKNYWNTHI+RKLLNRGIDP TH  + E
Sbjct:    87 NKWSLIAGKLPGRTDNEIKNYWNTHIKRKLLNRGIDPKTHGSIIE 131

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009631 "cold acclimation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

TAIR|locus:2132584 MYB85 "myb domain protein 85" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 33/45 (73%), Positives = 39/45 (86%)

Query:    19 SSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNE 63
             + WS IA RLPGRTDNEIKN+WNTHI++KLL  GIDP TH+PLN+
Sbjct:    87 NKWSKIASRLPGRTDNEIKNHWNTHIKKKLLKMGIDPMTHQPLNQ 131

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

TAIR|locus:2075387 MYB107 "myb domain protein 107" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 2.7e-15, P = 2.7e-15
 Identities = 36/51 (70%), Positives = 42/51 (82%)

Query:    10 SIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRP 60
             ++ SL+ +K  WS IAG LPGRTDNEIKNYWNTHIR+KL+  GIDP THRP
Sbjct:    80 NLHSLLGNK--WSSIAGHLPGRTDNEIKNYWNTHIRKKLIQMGIDPVTHRP 128

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

TAIR|locus:2149000 MYB9 "myb domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 3.4e-15, P = 3.4e-15
 Identities = 36/51 (70%), Positives = 42/51 (82%)

Query:    10 SIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRP 60
             ++ SL+ +K  WS IAG LPGRTDNEIKNYWNTH+R+KLL  GIDP THRP
Sbjct:    80 NLHSLLGNK--WSSIAGNLPGRTDNEIKNYWNTHLRKKLLQMGIDPVTHRP 128

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	243
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	1e-19
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	8e-14
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	2e-07
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	4e-06
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	8e-06

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score = 84.4 bits (208), Expect = 1e-19
 Identities = 34/42 (80%), Positives = 40/42 (95%)

Query: 21  WSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLN 62
           WSLIAGR+PGRTDNEIKNYWNTH+R+KLL +GIDP TH+PL+
Sbjct: 100 WSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLD 141

Length = 249

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score = 70.0 bits (171), Expect = 8e-14
 Identities = 29/43 (67%), Positives = 36/43 (83%)

Query: 21  WSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNE 63
           WS IA +LPGRTDNEIKN WN+ +++KL  RGIDP TH+PL+E
Sbjct: 89  WSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSE 131

Length = 459

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 15/24 (62%), Positives = 18/24 (75%)

Query: 21 WSLIAGRLPGRTDNEIKNYWNTHI 44
          WS IA  LPGRTDN+ KN WN ++
Sbjct: 24 WSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 42.2 bits (100), Expect = 4e-06
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 21 WSLIAGRLPGRTDNEIKNYWNTHIRR 46
          W  IA  LPGRT  + +  W   ++ 
Sbjct: 24 WEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 41.8 bits (99), Expect = 8e-06
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 21 WSLIAGRLPGRTDNEIKNYWNTHI 44
          W  IA  LPGRT  + +  W   +
Sbjct: 22 WEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.63
PLN03212	249	Transcription repressor MYB5; Provisional	99.5
PLN03091	459	hypothetical protein; Provisional	99.42
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	98.99
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	98.85
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.82
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.7
PLN03212	249	Transcription repressor MYB5; Provisional	98.65
KOG0048	238	consensus Transcription factor, Myb superfamily [T	98.45
PLN03091	459	hypothetical protein; Provisional	98.37
COG5147	512	REB1 Myb superfamily proteins, including transcrip	96.4
COG5147	512	REB1 Myb superfamily proteins, including transcrip	96.38
KOG0049	939	consensus Transcription factor, Myb superfamily [T	96.24
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	96.2
KOG0051	607	consensus RNA polymerase I termination factor, Myb	93.85
KOG0049	939	consensus Transcription factor, Myb superfamily [T	91.24
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	90.29
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	89.13
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	88.96
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	88.51
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	85.55
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	82.58
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	80.36
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	80.16

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.63  E-value=2.8e-16  Score=139.51  Aligned_cols=58  Identities=59%  Similarity=1.035  Sum_probs=54.2

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhhCCCCCCCCCCC
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPL   61 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~~~~~p~t~rpl   61 (243)
                      +|||++||++|+.+||  ||+.||++|||||||+|||||+++++|++...++++.+..+.
T Consensus        67 ~eEe~~Ii~lH~~~GN--rWs~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~~~~~~~~~~  124 (238)
T KOG0048|consen   67 DEEEDLIIKLHALLGN--RWSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMGIDPSTHRPS  124 (238)
T ss_pred             HHHHHHHHHHHHHHCc--HHHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcCCCCCccccc
Confidence            6999999999999999  999999999999999999999999999999988877776654

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.50  E-value=3.3e-14  Score=128.42  Aligned_cols=63  Identities=57%  Similarity=1.050  Sum_probs=59.6

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhhCCCCCCCCCCCCCCCC
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEPAV   66 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~~~~~p~t~rpl~~~~~   66 (243)
                      +|||++|+++|.++|+  +|+.||++|||||+++|||||+.+++++++..+++|.+++|+.....
T Consensus        83 ~EED~lLlel~~~~Gn--KWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~kp~~~~~~  145 (249)
T PLN03212         83 SDEEDLILRLHRLLGN--RWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLDANNI  145 (249)
T ss_pred             hHHHHHHHHHHHhccc--cHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCCCCCCcccc
Confidence            6899999999999999  99999999999999999999999999999999999999999876543

>PLN03091 hypothetical protein; Provisional

Probab=99.42  E-value=2e-13  Score=131.52  Aligned_cols=62  Identities=48%  Similarity=0.888  Sum_probs=59.4

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhhCCCCCCCCCCCCCCC
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEPA   65 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~~~~~p~t~rpl~~~~   65 (243)
                      +|||++|+++|.+||+  +|+.||++|||||+++|||||+.++|++++.++++|.+|+|+.+..
T Consensus        72 ~EED~lLLeL~k~~Gn--KWskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~t~kpl~e~E  133 (459)
T PLN03091         72 QQEENLIIELHAVLGN--RWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVE  133 (459)
T ss_pred             HHHHHHHHHHHHHhCc--chHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccc
Confidence            7999999999999999  9999999999999999999999999999999999999999998643

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=98.99  E-value=4e-10  Score=79.55  Aligned_cols=52  Identities=25%  Similarity=0.415  Sum_probs=43.8

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhhCCCCC
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDP   55 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~~~~~p   55 (243)
                      +|||++|+.+|..+|+  +|..||.+|+.||..+|++||+.+|++.+....+++
T Consensus         3 ~eEd~~L~~~~~~~g~--~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~   54 (60)
T PF13921_consen    3 KEEDELLLELVKKYGN--DWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTK   54 (60)
T ss_dssp             HHHHHHHHHHHHHHTS---HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSH
T ss_pred             HHHHHHHHHHHHHHCc--CHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCH
Confidence            6999999999999999  999999999669999999999998877666655543

...

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=98.85  E-value=3.2e-09  Score=72.59  Aligned_cols=41  Identities=20%  Similarity=0.383  Sum_probs=38.7

Q ss_pred             hhhHHHHHHHHHHhCCcCc-HHHHhccCC-CCChHHHHHHHHHHH
Q 026135            2 KKMNSLSNSIASLVTSKSS-WSLIAGRLP-GRTDNEIKNYWNTHI   44 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~k-Ws~IA~~Lp-GRTdn~IKNrWn~~l   44 (243)
                      +|||++|++++.++|.  . |..||..|| |||..+|++||+.++
T Consensus         6 ~eE~~~l~~~v~~~g~--~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    6 EEEDEKLLEAVKKYGK--DNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             HHHHHHHHHHHHHSTT--THHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCC--cHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            6899999999999998  6 999999999 999999999999864

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.82  E-value=5.8e-09  Score=68.15  Aligned_cols=42  Identities=26%  Similarity=0.565  Sum_probs=39.7

Q ss_pred             hhhHHHHHHHHHHhC-CcCcHHHHhccCCCCChHHHHHHHHHHHH
Q 026135            2 KKMNSLSNSIASLVT-SKSSWSLIAGRLPGRTDNEIKNYWNTHIR   45 (243)
Q Consensus         2 ~EEDelLi~l~s~~G-n~~kWs~IA~~LpGRTdn~IKNrWn~~lr   45 (243)
                      ++||++|+.++..+| .  .|..||..|++||+.+|++||+.+++
T Consensus         6 ~~E~~~l~~~~~~~g~~--~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        6 EEEDELLIELVKKYGKN--NWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             HHHHHHHHHHHHHHCcC--CHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            689999999999999 8  99999999999999999999998764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.70  E-value=2.7e-08  Score=64.24  Aligned_cols=40  Identities=25%  Similarity=0.483  Sum_probs=38.1

Q ss_pred             hhhHHHHHHHHHHhC-CcCcHHHHhccCCCCChHHHHHHHHHH
Q 026135            2 KKMNSLSNSIASLVT-SKSSWSLIAGRLPGRTDNEIKNYWNTH   43 (243)
Q Consensus         2 ~EEDelLi~l~s~~G-n~~kWs~IA~~LpGRTdn~IKNrWn~~   43 (243)
                      +|||++|+.++..+| .  .|..||..|++|+..+|++||+.+
T Consensus         4 ~eE~~~l~~~~~~~g~~--~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           4 EEEDELLLEAVKKYGKN--NWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             HHHHHHHHHHHHHHCcC--CHHHHHhHcCCCCHHHHHHHHHHh
Confidence            689999999999999 7  999999999999999999999875

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PLN03212 Transcription repressor MYB5; Provisional

Probab=98.65  E-value=2e-08  Score=91.26  Aligned_cols=59  Identities=14%  Similarity=0.198  Sum_probs=53.6

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccC-CCCChHHHHHHHHHHHHhhhhhCCCCCCCCCCC
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRL-PGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPL   61 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~L-pGRTdn~IKNrWn~~lrrkl~~~~~~p~t~rpl   61 (243)
                      +|||++|++++..+|.. +|..||+++ +|||+++|+.||..+|++.+....|++.+..-+
T Consensus        30 ~EEDe~L~~lV~kyG~~-nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lL   89 (249)
T PLN03212         30 VEEDEILVSFIKKEGEG-RWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLI   89 (249)
T ss_pred             HHHHHHHHHHHHHhCcc-cHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHH
Confidence            79999999999999943 899999998 699999999999999999999999988876644

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=98.45  E-value=7.8e-08  Score=85.67  Aligned_cols=60  Identities=7%  Similarity=0.043  Sum_probs=55.4

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCC-CCChHHHHHHHHHHHHhhhhhCCCCCCCCCCCC
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLP-GRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLN   62 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~Lp-GRTdn~IKNrWn~~lrrkl~~~~~~p~t~rpl~   62 (243)
                      .|||++|++++..+|.. +|..|++.++ ||++.+|+-||..|||+.++...+++.+.+.+-
T Consensus        14 ~EED~~L~~~V~~~G~~-~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii   74 (238)
T KOG0048|consen   14 QEEDLTQIRSIKSFGKH-NGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLII   74 (238)
T ss_pred             hHHHHHHHHHHHHhCCC-CcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHH
Confidence            69999999999999963 7999999999 999999999999999999999999988777653

>PLN03091 hypothetical protein; Provisional

Probab=98.37  E-value=1.9e-07  Score=90.72  Aligned_cols=57  Identities=11%  Similarity=0.124  Sum_probs=51.6

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccC-CCCChHHHHHHHHHHHHhhhhhCCCCCCCCC
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRL-PGRTDNEIKNYWNTHIRRKLLNRGIDPATHR   59 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~L-pGRTdn~IKNrWn~~lrrkl~~~~~~p~t~r   59 (243)
                      +|||++|++++..+|.. +|..||+.+ +||++++||.||+.+|++.+++..|++.+..
T Consensus        19 pEEDe~L~~~V~kyG~~-nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~   76 (459)
T PLN03091         19 PEEDEKLLRHITKYGHG-CWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEEN   76 (459)
T ss_pred             HHHHHHHHHHHHHhCcC-CHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHH
Confidence            69999999999999953 899999998 4999999999999999999999988877663

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=96.40  E-value=0.0032  Score=62.77  Aligned_cols=46  Identities=13%  Similarity=0.142  Sum_probs=42.6

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhh
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLL   49 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~   49 (243)
                      .|||+.|+.++.++|+  +|+.||..++||++.+|.+||+..+.....
T Consensus        77 ~eed~~li~l~~~~~~--~wstia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          77 EEEDEQLIDLDKELGT--QWSTIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             HHHHHHHHHHHHhcCc--hhhhhccccCccchHHHHHHHHHHhhhhhc
Confidence            5899999999999999  999999999999999999999987776555

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=96.38  E-value=0.0019  Score=64.45  Aligned_cols=60  Identities=18%  Similarity=0.351  Sum_probs=52.3

Q ss_pred             ChhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhhCCCCCCCCCCC
Q 026135            1 MKKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPL   61 (243)
Q Consensus         1 ~~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~~~~~p~t~rpl   61 (243)
                      +..||+.+..++..+|.+ .|+.||..|.-|+.+++++||+.++.+.+....+......-+
T Consensus        24 ~~~EDe~l~~~vk~l~~n-nws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~l   83 (512)
T COG5147          24 KRTEDEDLKALVKKLGPN-NWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQL   83 (512)
T ss_pred             CCcchhHHHHHHhhcccc-cHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHH
Confidence            467999999999999954 899999999999999999999999999999888766654443

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=96.24  E-value=0.0059  Score=62.71  Aligned_cols=54  Identities=15%  Similarity=0.260  Sum_probs=48.5

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhhCCCCCC
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPA   56 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~~~~~p~   56 (243)
                      .+||-+|+..+++||.+ -|.+|...+|||++.+|+.||...|.+.++...|+-.
T Consensus       365 ~~ED~~L~~AV~~Yg~k-dw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~  418 (939)
T KOG0049|consen  365 DQEDVLLVCAVSRYGAK-DWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLV  418 (939)
T ss_pred             CHHHHHHHHHHHHhCcc-chhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeec
Confidence            58999999999999963 7999999999999999999999999998888777543

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=96.20  E-value=0.0041  Score=62.21  Aligned_cols=54  Identities=15%  Similarity=0.238  Sum_probs=48.7

Q ss_pred             hhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhhCCCCCCC
Q 026135            3 KMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPAT   57 (243)
Q Consensus         3 EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~~~~~p~t   57 (243)
                      -||++|-..+..+|.+ +|+.|+++|+-.+..+|++||+.++.+.++...|....
T Consensus        13 tEdeilkaav~kyg~n-qws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~ee   66 (617)
T KOG0050|consen   13 TEDEVLKAAVMKYGKN-QWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREE   66 (617)
T ss_pred             cHHHHHHHHHHHcchH-HHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhH
Confidence            4899999999999943 99999999999999999999999999999988886553

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=93.85  E-value=0.061  Score=54.79  Aligned_cols=43  Identities=14%  Similarity=0.302  Sum_probs=39.6

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhh
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRK   47 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrk   47 (243)
                      +||++.|..+|.++|+  .|..|++.| ||....|+.||..+.+..
T Consensus       389 ~ee~eeL~~l~~~~g~--~W~~Ig~~l-gr~P~~crd~wr~~~~~g  431 (607)
T KOG0051|consen  389 PEEEEELKKLVVEHGN--DWKEIGKAL-GRMPMDCRDRWRQYVKCG  431 (607)
T ss_pred             cchHHHHHHHHHHhcc--cHHHHHHHH-ccCcHHHHHHHHHhhccc
Confidence            6899999999999999  999999998 999999999999876554

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=91.24  E-value=0.27  Score=50.99  Aligned_cols=45  Identities=18%  Similarity=0.175  Sum_probs=35.8

Q ss_pred             hhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhh
Q 026135            3 KMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKL   48 (243)
Q Consensus         3 EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl   48 (243)
                      .||+.||.++..||.. .|.+||..||.||..+...|-...++.++
T Consensus       418 ~edeqL~~~V~~YG~g-~WakcA~~Lp~~t~~q~~rrR~R~~~~k~  462 (939)
T KOG0049|consen  418 VEDEQLLYAVKVYGKG-NWAKCAMLLPKKTSRQLRRRRLRLIAAKL  462 (939)
T ss_pred             cchHHHHHHHHHHccc-hHHHHHHHccccchhHHHHHHHHHHHHHH
Confidence            4889999999999943 99999999999999776665555554443

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=90.29  E-value=0.7  Score=31.41  Aligned_cols=40  Identities=15%  Similarity=0.128  Sum_probs=31.1

Q ss_pred             ChhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHH
Q 026135            1 MKKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTH   43 (243)
Q Consensus         1 ~~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~   43 (243)
                      |++++..++.++-..|-  .|..||..| |.+.+.|+.+...-
T Consensus        11 L~~~~r~i~~l~~~~g~--s~~eIa~~l-~~s~~~v~~~l~ra   50 (54)
T PF08281_consen   11 LPERQREIFLLRYFQGM--SYAEIAEIL-GISESTVKRRLRRA   50 (54)
T ss_dssp             S-HHHHHHHHHHHTS-----HHHHHHHC-TS-HHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCc--CHHHHHHHH-CcCHHHHHHHHHHH
Confidence            56889999999999998  999999999 99999999976654

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=89.13  E-value=0.52  Score=34.92  Aligned_cols=46  Identities=13%  Similarity=0.203  Sum_probs=32.3

Q ss_pred             hhhHHHHHHHHHHh--------CCcCcHHHHhccCC-CCChHHHHHHHHHHHHhhh
Q 026135            2 KKMNSLSNSIASLV--------TSKSSWSLIAGRLP-GRTDNEIKNYWNTHIRRKL   48 (243)
Q Consensus         2 ~EEDelLi~l~s~~--------Gn~~kWs~IA~~Lp-GRTdn~IKNrWn~~lrrkl   48 (243)
                      .|||++|++.+.++        ||. -|..++..-| .+|=.+.|+||..+|+.+.
T Consensus         7 ~edD~~l~~~v~~~~~~~~~~~Gn~-iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    7 EEDDAALLDYVKENERQGGSVSGNK-IWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             HHHHHHHHHHHHHT--STTTTTSSH-HHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHHhccCCCCCchHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            68999999999443        441 4999999988 9999999999988887664

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=88.96  E-value=0.37  Score=48.70  Aligned_cols=45  Identities=20%  Similarity=0.319  Sum_probs=40.8

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhh
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLL   49 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~   49 (243)
                      .|||+.|+++..++-.  .|..||..| ||+.++|-.||+.++--...
T Consensus        64 ~eederlLhlakl~p~--qwrtIa~i~-gr~~~qc~eRy~~ll~~~~s  108 (617)
T KOG0050|consen   64 REEDERLLHLAKLEPT--QWRTIADIM-GRTSQQCLERYNNLLDVYVS  108 (617)
T ss_pred             hhHHHHHHHHHHhcCC--ccchHHHHh-hhhHHHHHHHHHHHHHHHHh
Confidence            5899999999999999  999999987 99999999999988766554

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=88.51  E-value=0.61  Score=34.51  Aligned_cols=48  Identities=21%  Similarity=0.282  Sum_probs=32.0

Q ss_pred             hhhHHHHHHHHHH------hC---Cc---CcHHHHhccC----CCCChHHHHHHHHHHHHhhhh
Q 026135            2 KKMNSLSNSIASL------VT---SK---SSWSLIAGRL----PGRTDNEIKNYWNTHIRRKLL   49 (243)
Q Consensus         2 ~EEDelLi~l~s~------~G---n~---~kWs~IA~~L----pGRTdn~IKNrWn~~lrrkl~   49 (243)
                      .+|-.+||+++..      ++   ..   ..|..||..|    -.||..+|+++|+.+.++...
T Consensus         6 ~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~   69 (90)
T PF13837_consen    6 DEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKK   69 (90)
T ss_dssp             HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            4677788887776      32   10   1499999998    479999999999996555443

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=85.55  E-value=1.1  Score=44.35  Aligned_cols=41  Identities=22%  Similarity=0.225  Sum_probs=35.9

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHH
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTH   43 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~   43 (243)
                      -+||-+||+....||-. +|..||.++.-|+..+||.+|..+
T Consensus        77 adEEilLLea~~t~G~G-NW~dIA~hIGtKtkeeck~hy~k~  117 (438)
T KOG0457|consen   77 ADEEILLLEAAETYGFG-NWQDIADHIGTKTKEECKEHYLKH  117 (438)
T ss_pred             hHHHHHHHHHHHHhCCC-cHHHHHHHHcccchHHHHHHHHHH
Confidence            37889999999999932 899999999999999999998643

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=82.58  E-value=1.6  Score=37.97  Aligned_cols=48  Identities=19%  Similarity=0.230  Sum_probs=33.9

Q ss_pred             hhhHHHHHHHHHHh---CCc--CcHHHHhccCCCCChHHHHHHHHHHHHhhhhh
Q 026135            2 KKMNSLSNSIASLV---TSK--SSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLN   50 (243)
Q Consensus         2 ~EEDelLi~l~s~~---Gn~--~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~   50 (243)
                      +|||.||-+.+-.+   |.-  .-...+++.| +||.-+|.=|||+++|+++..
T Consensus         9 ~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~   61 (161)
T TIGR02894         9 HEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEE   61 (161)
T ss_pred             cHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHH
Confidence            46776665544333   420  0367778887 999999999999999987643

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=80.36  E-value=1.9  Score=41.71  Aligned_cols=39  Identities=21%  Similarity=0.244  Sum_probs=35.4

Q ss_pred             hhHHHHHHHHHHhC-CcCcHHHHhccCCCCChHHHHHHHHHH
Q 026135            3 KMNSLSNSIASLVT-SKSSWSLIAGRLPGRTDNEIKNYWNTH   43 (243)
Q Consensus         3 EEDelLi~l~s~~G-n~~kWs~IA~~LpGRTdn~IKNrWn~~   43 (243)
                      +||-+||+.-..+| .  +|.-||.++..|+..+||.+|..+
T Consensus        69 dEEllli~~~~TlGlG--NW~dIadyiGsr~kee~k~HylK~  108 (432)
T COG5114          69 DEELLLIECLDTLGLG--NWEDIADYIGSRAKEEIKSHYLKM  108 (432)
T ss_pred             hHHHHHHHHHHhcCCC--cHHHHHHHHhhhhhHHHHHHHHHH
Confidence            68899999999999 5  899999999999999999998643

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=80.16  E-value=4  Score=29.40  Aligned_cols=41  Identities=10%  Similarity=0.161  Sum_probs=34.3

Q ss_pred             hhhHHHHHHHHHHhCCcCcH---HHHhccCC--CCChHHHHHHHHHH
Q 026135            2 KKMNSLSNSIASLVTSKSSW---SLIAGRLP--GRTDNEIKNYWNTH   43 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kW---s~IA~~Lp--GRTdn~IKNrWn~~   43 (243)
                      +||.++.++.+..+|-. .|   ..|+..|.  +.|..+|+.+...|
T Consensus         8 ~eeh~~Fl~ai~~~G~g-~~a~pk~I~~~~~~~~lT~~qV~SH~QKy   53 (57)
T TIGR01557         8 EDLHDRFLQAVQKLGGP-DWATPKRILELMVVDGLTRDQVASHLQKY   53 (57)
T ss_pred             HHHHHHHHHHHHHhCCC-cccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            68999999999999932 89   99999874  33999999988765

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	243
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		2e-04
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		2e-04
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		3e-04
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		3e-04
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		3e-04
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		3e-04
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		3e-04
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		4e-04

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 21 WSLIAGRLPGRTDNEIKNYWNTHIRRKL 48
          W+ IA  LPGRTDN IKN+WN+ +RRK+
Sbjct: 27 WAEIAKLLPGRTDNAIKNHWNSTMRRKV 54

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 21 WSLIAGRLPGRTDNEIKNYWNTHIRRKL 48
          W+ IA  LPGRTDN IKN+WN+ +RRK+
Sbjct: 25 WAEIAKLLPGRTDNAIKNHWNSTMRRKV 52

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 21  WSLIAGRLPGRTDNEIKNYWNTHIRRKL 48
           W+ IA  LPGRTDN IKN+WN+ +RRK+
Sbjct: 132 WAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 21  WSLIAGRLPGRTDNEIKNYWNTHIRRKL 48
           W+ IA  LPGRTDN IKN+WN+ +RRK+
Sbjct: 78  WAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 21  WSLIAGRLPGRTDNEIKNYWNTHIRRKL 48
           W+ IA  LPGRTDN IKN+WN+ +RRK+
Sbjct: 78  WAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 21  WSLIAGRLPGRTDNEIKNYWNTHIRRKL 48
           W+ IA  LPGRTDN +KN+WN+ I+RK+
Sbjct: 81  WAEIAKLLPGRTDNAVKNHWNSTIKRKV 108

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 21  WSLIAGRLPGRTDNEIKNYWNTHIRRKL 48
           W+ IA  LPGRTDN +KN+WN+ +RRK+
Sbjct: 101 WAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 19  SSWSLIAGRLPGRTDNEIKNYWNTHIRRKL 48
           S WS+IA  +PGRTDN IKN WN+ I +++
Sbjct: 74  SKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	243
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	1e-17
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	4e-16
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	3e-15
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	3e-15
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	1e-12
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	2e-12

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score = 75.8 bits (187), Expect = 1e-17
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 21  WSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRP 60
           WS+IA  +PGRTDN IKN WN+ I +++           P
Sbjct: 76  WSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLP 115

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score = 70.6 bits (174), Expect = 4e-16
 Identities = 18/28 (64%), Positives = 23/28 (82%)

Query: 21  WSLIAGRLPGRTDNEIKNYWNTHIRRKL 48
           W+ IA  LPGRTDN IKN+WN+ +RRK+
Sbjct: 78  WAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score = 69.1 bits (170), Expect = 3e-15
 Identities = 17/28 (60%), Positives = 23/28 (82%)

Query: 21  WSLIAGRLPGRTDNEIKNYWNTHIRRKL 48
           W+ IA  LPGRTDN +KN+WN+ +RRK+
Sbjct: 101 WAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score = 68.8 bits (169), Expect = 3e-15
 Identities = 14/38 (36%), Positives = 19/38 (50%)

Query: 21  WSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATH 58
           W++IA   PGRTD  IKN W T   +  + +      H
Sbjct: 84  WAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQMLEH 121

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 62.7 bits (153), Expect = 1e-12
 Identities = 18/28 (64%), Positives = 23/28 (82%)

Query: 21  WSLIAGRLPGRTDNEIKNYWNTHIRRKL 48
           W+ IA  LPGRTDN IKN+WN+ +RRK+
Sbjct: 132 WAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score = 60.6 bits (148), Expect = 2e-12
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 21  WSLIAGRLPGRTDNEIKNYWNTHIRRKLLNR 51
           W+ I+  L  R+DN I+N W    R +  ++
Sbjct: 75  WNKISKFLKNRSDNNIRNRWMMIARHRAKHQ 105

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	243
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.48
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.33
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.33
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.31
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.28
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.27
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.27
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.26
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.26
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.25
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.22
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.22
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.21
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.2
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.82
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.17
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.14
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.13
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.07
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.03
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.01
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	98.9
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	98.9
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.9
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	98.87
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	98.87
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	98.85
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	98.84
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.82
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	98.77
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	98.74
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	98.65
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	98.64
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	98.5
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.44
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	98.41
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.36
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.28
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.08
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	97.29
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.23
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	97.19
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	95.96
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	96.56
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	95.34
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	95.05
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	94.89
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	94.31
2crg_A	70	Metastasis associated protein MTA3; transcription	93.37
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	93.2
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	91.44

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.48  E-value=4.4e-14  Score=103.56  Aligned_cols=55  Identities=20%  Similarity=0.257  Sum_probs=50.3

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhhCCCCCCCCC
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHR   59 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~~~~~p~t~r   59 (243)
                      +|||++|+++|.+||+  +|..||.+|||||+++||+||+.+++++++. ++++..+.
T Consensus        14 ~eEd~~l~~~~~~~G~--~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~s   68 (72)
T 2cu7_A           14 IEEKELFEQGLAKFGR--RWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETPN   68 (72)
T ss_dssp             HHHHHHHHHHHHHTCS--CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCSC
T ss_pred             HHHHHHHHHHHHHHCc--CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCccc
Confidence            6999999999999999  9999999999999999999999999998877 77766543

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=8.8e-13  Score=95.83  Aligned_cols=54  Identities=13%  Similarity=0.241  Sum_probs=51.1

Q ss_pred             hhhHHHHHHHHHHhC-CcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhhCCCCCCC
Q 026135            2 KKMNSLSNSIASLVT-SKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPAT   57 (243)
Q Consensus         2 ~EEDelLi~l~s~~G-n~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~~~~~p~t   57 (243)
                      +|||++|+++|..|| +  +|..||.+|+|||+++|++||+.+|++.+....|++.+
T Consensus        14 ~eED~~L~~~v~~~G~~--~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eE   68 (70)
T 2dim_A           14 NTEDEILKAAVMKYGKN--QWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPS   68 (70)
T ss_dssp             HHHHHHHHHHHHHTCSS--CHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSC
T ss_pred             HHHHHHHHHHHHHHCcC--CHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHh
Confidence            699999999999999 7  99999999999999999999999999999988888765

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=1.1e-12  Score=94.33  Aligned_cols=49  Identities=16%  Similarity=0.241  Sum_probs=45.8

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhhCCC
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGI   53 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~~~~   53 (243)
                      +|||++|+++|.++|+  +|..||. |+|||+++||+||+.++++.+....-
T Consensus        14 ~eED~~L~~~~~~~g~--~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~   62 (66)
T 2din_A           14 REEEEKLLHLAKLMPT--QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG   62 (66)
T ss_dssp             HHHHHHHHHHHHHCTT--CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHHHHcCC--CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence            6999999999999999  9999999 99999999999999999999887543

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.31  E-value=9.1e-13  Score=92.99  Aligned_cols=46  Identities=15%  Similarity=0.367  Sum_probs=43.1

Q ss_pred             hhhHHHHHHHHHHhC-CcCcHHHHhccCCCCChHHHHHHHHHHHHhhhh
Q 026135            2 KKMNSLSNSIASLVT-SKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLL   49 (243)
Q Consensus         2 ~EEDelLi~l~s~~G-n~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~   49 (243)
                      +|||++|+++|.+|| +  +|..||.+|||||+++||+||+.+|++.++
T Consensus        13 ~eED~~L~~~v~~~G~~--~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A           13 HEEDEQLRALVRQFGQQ--DWKFLASHFPNRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             HHHHHHHHHHHHHTCTT--CHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred             HHHHHHHHHHHHHhCCC--CHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence            699999999999999 7  999999999999999999999999887653

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.28  E-value=3.7e-12  Score=92.41  Aligned_cols=50  Identities=22%  Similarity=0.228  Sum_probs=46.3

Q ss_pred             hhhHHHHHHHHHHhC-CcCcHHHHhccCC--CCChHHHHHHHHHHHHhhhhhCCC
Q 026135            2 KKMNSLSNSIASLVT-SKSSWSLIAGRLP--GRTDNEIKNYWNTHIRRKLLNRGI   53 (243)
Q Consensus         2 ~EEDelLi~l~s~~G-n~~kWs~IA~~Lp--GRTdn~IKNrWn~~lrrkl~~~~~   53 (243)
                      +|||++|+++|..|| +  +|+.||..|+  |||+++||+||+.++++.+.....
T Consensus        15 ~eED~~L~~~v~~~G~~--~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~   67 (69)
T 1ity_A           15 WEEDKNLRSGVRKYGEG--NWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDS   67 (69)
T ss_dssp             HHHHHHHHHHHHHHCSS--CHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred             HHHHHHHHHHHHHHCCC--cHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence            699999999999999 7  9999999999  999999999999999998776544

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.27  E-value=3.1e-12  Score=98.64  Aligned_cols=46  Identities=39%  Similarity=0.679  Sum_probs=41.5

Q ss_pred             ChhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhh
Q 026135            1 MKKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKL   48 (243)
Q Consensus         1 ~~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl   48 (243)
                      .+|||++|+++|.++|+  +|+.||++|||||+++|||||+.++++++
T Consensus        60 t~eEd~~L~~~~~~~G~--~W~~Ia~~l~gRt~~~~k~rw~~~~~~~~  105 (105)
T 1gv2_A           60 TEEEDRIIYQAHKRLGN--RWAEIAKLLPGRTDNAIKNHWNSTMRRKV  105 (105)
T ss_dssp             CHHHHHHHHHHHHHHSS--CHHHHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred             CHHHHHHHHHHHHHhCC--CHHHHHHHcCCCCHHHHHHHHHHHHhccC
Confidence            36999999999999999  99999999999999999999999998864

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.27  E-value=3.7e-12  Score=87.37  Aligned_cols=44  Identities=20%  Similarity=0.465  Sum_probs=41.1

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHh
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRR   46 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrr   46 (243)
                      +|||++|+++|.++|+. +|..||.+|||||+++|++||+.+|++
T Consensus         8 ~eED~~L~~~v~~~G~~-~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            8 REEDEKLKKLVEQNGTD-DWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             HHHHHHHHHHHHHHCSS-CHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            69999999999999963 899999999999999999999999864

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.26  E-value=5.4e-12  Score=101.42  Aligned_cols=57  Identities=32%  Similarity=0.480  Sum_probs=50.8

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhhCCCCCCCCCC
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRP   60 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~~~~~p~t~rp   60 (243)
                      +|||++|+++|.++|+  +|+.||++|||||+++|||||+.++++++.....+...-.|
T Consensus        59 ~eEd~~L~~~~~~~G~--~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~~~p  115 (131)
T 3zqc_A           59 PEEDETIFRNYLKLGS--KWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLP  115 (131)
T ss_dssp             HHHHHHHHHHHHHSCS--CHHHHTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCCCCC
T ss_pred             HHHHHHHHHHHHHHCc--CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCCcccccCc
Confidence            6999999999999999  99999999999999999999999999998876655544444

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.26  E-value=2e-12  Score=96.38  Aligned_cols=39  Identities=15%  Similarity=0.248  Sum_probs=37.5

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHH
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTH   43 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~   43 (243)
                      +|||++|+++|.++|+  +|+.||+.| |||+++|||||+.+
T Consensus        28 ~EED~~L~~l~~~~G~--kW~~IA~~l-gRt~~q~knRw~~L   66 (73)
T 2llk_A           28 PEEIEKLKELRIKHGN--DWATIGAAL-GRSASSVKDRCRLM   66 (73)
T ss_dssp             HHHHHHHHHHHHHHSS--CHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHCC--CHHHHHHHh-CCCHHHHHHHHHHH
Confidence            7999999999999999  999999999 99999999999864

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.25  E-value=4.2e-12  Score=87.19  Aligned_cols=44  Identities=25%  Similarity=0.498  Sum_probs=40.6

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHh
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRR   46 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrr   46 (243)
                      +|||++|+++|..+|.. +|..||..|+|||+++||+||+.+|++
T Consensus         8 ~eED~~L~~~v~~~G~~-~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            8 KEEDQRLIKLVQKYGPK-RWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHCcC-hHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            69999999999999962 599999999999999999999998864

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.22  E-value=7.3e-12  Score=97.47  Aligned_cols=47  Identities=23%  Similarity=0.372  Sum_probs=44.4

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhh
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLN   50 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~   50 (243)
                      +|||++|+++|.+||+  +|+.||++|||||+++|||||+.++++..+.
T Consensus        58 ~eEd~~L~~~~~~~G~--~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~~  104 (107)
T 2k9n_A           58 PEEDMLLDQKYAEYGP--KWNKISKFLKNRSDNNIRNRWMMIARHRAKH  104 (107)
T ss_dssp             HHHHHHHHHHHHHTCS--CHHHHHHHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHhCc--CHHHHHHHCCCCCHHHHHHHHHHHHhhHHHh
Confidence            6999999999999999  9999999999999999999999999887654

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.22  E-value=9.4e-12  Score=86.02  Aligned_cols=44  Identities=23%  Similarity=0.215  Sum_probs=41.0

Q ss_pred             hhhHHHHHHHHHHhC-CcCcHHHHhccCC--CCChHHHHHHHHHHHHhh
Q 026135            2 KKMNSLSNSIASLVT-SKSSWSLIAGRLP--GRTDNEIKNYWNTHIRRK   47 (243)
Q Consensus         2 ~EEDelLi~l~s~~G-n~~kWs~IA~~Lp--GRTdn~IKNrWn~~lrrk   47 (243)
                      +|||++|+++|..+| +  +|..||..|+  |||+++|++||..+++.+
T Consensus         7 ~eEd~~L~~~v~~~G~~--~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k   53 (53)
T 1w0t_A            7 WEEDKNLRSGVRKYGEG--NWSKILLHYKFNNRTSVMLKDRWRTMKKLK   53 (53)
T ss_dssp             HHHHHHHHHHHHHHCTT--CHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHHCcC--CHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence            699999999999999 6  9999999999  999999999999998753

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.21  E-value=7.5e-12  Score=99.93  Aligned_cols=45  Identities=38%  Similarity=0.692  Sum_probs=41.9

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhh
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKL   48 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl   48 (243)
                      +|||++|+++|.++|+  +|+.||++|||||+++|||||+.++++++
T Consensus        84 ~eEd~~L~~~~~~~G~--~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~  128 (128)
T 1h8a_C           84 EEEDRIIYQAHKRLGN--RWAEIAKLLPGRTDNAVKNHWNSTMRRKV  128 (128)
T ss_dssp             HHHHHHHHHHHHHHCS--CHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHHHHHHHHCc--CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            7999999999999999  99999999999999999999999998864

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=1.1e-11  Score=90.93  Aligned_cols=47  Identities=13%  Similarity=0.118  Sum_probs=44.0

Q ss_pred             hhhHHHHHHHHHHhC------CcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhh
Q 026135            2 KKMNSLSNSIASLVT------SKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLN   50 (243)
Q Consensus         2 ~EEDelLi~l~s~~G------n~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~   50 (243)
                      +|||++|++++..||      +  +|..||.+|+|||+++|++||+.|+++.++.
T Consensus        13 ~eEd~~L~~~v~~~g~~~~~~~--~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~   65 (75)
T 2yum_A           13 VEEQKKLEQLLIKYPPEEVESR--RWQKIADELGNRTAKQVASQVQKYFIKLTKA   65 (75)
T ss_dssp             HHHHHHHHHHHHHSCCCSCHHH--HHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred             HHHHHHHHHHHHHhCCCCCCcc--cHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence            699999999999999      7  9999999999999999999999999887654

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.82  E-value=1.7e-12  Score=99.15  Aligned_cols=46  Identities=20%  Similarity=0.211  Sum_probs=43.2

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhh
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLL   49 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~   49 (243)
                      +|||++|+++|.+||+  +|+.||.+|||||+++|||||+.++++.-+
T Consensus        21 ~eEd~~l~~~~~~~G~--~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l   66 (89)
T 2ltp_A           21 EEEMGTAKKGLLEHGR--NWSAIARMVGSKTVSQCKNFYFNYKKRQNL   66 (89)
Confidence            6899999999999999  999999999999999999999999988544

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.17  E-value=1.6e-11  Score=87.07  Aligned_cols=43  Identities=9%  Similarity=0.091  Sum_probs=40.5

Q ss_pred             hhhHHHHHHHHHHhC-CcCcHHHHhccCCCCChHHHHHHHHHHHHh
Q 026135            2 KKMNSLSNSIASLVT-SKSSWSLIAGRLPGRTDNEIKNYWNTHIRR   46 (243)
Q Consensus         2 ~EEDelLi~l~s~~G-n~~kWs~IA~~LpGRTdn~IKNrWn~~lrr   46 (243)
                      +|||++|+++|..|| +  +|..||++|||||+++|++||+.++..
T Consensus        13 ~eED~~L~~~v~~~G~~--~W~~Ia~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A           13 AQEEMALLEAVMDCGFG--NWQDVANQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             HHHHHHHHHHHHHTCTT--CHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHCcC--cHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence            699999999999999 7  999999999999999999999988753

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.14  E-value=1.9e-11  Score=109.27  Aligned_cols=46  Identities=13%  Similarity=0.274  Sum_probs=44.0

Q ss_pred             hhhHHHHHHHHHHhCCcCc------HHHHhccCCCCChHHHHHHHHHHHHhhhh
Q 026135            2 KKMNSLSNSIASLVTSKSS------WSLIAGRLPGRTDNEIKNYWNTHIRRKLL   49 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~k------Ws~IA~~LpGRTdn~IKNrWn~~lrrkl~   49 (243)
                      +|||++|+++|.++|+  +      |..||++|||||+|+|||||+.+|++++.
T Consensus        13 ~EED~~Ile~v~k~Gn--~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln   64 (246)
T 1ign_A           13 DEEDEFILDVVRKNPT--RRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE   64 (246)
T ss_dssp             HHHHHHHHHHHHTSGG--GTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred             HHHHHHHHHHHHHhCc--CccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence            7999999999999998  6      99999999999999999999999999875

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.13  E-value=4.5e-11  Score=95.56  Aligned_cols=45  Identities=31%  Similarity=0.419  Sum_probs=42.4

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhh
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKL   48 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl   48 (243)
                      +|||++|+++|.+||+  +|+.||++|||||+++|||||+.++++.-
T Consensus        67 ~eEd~~L~~~v~~~G~--~W~~Ia~~l~gRt~~~~k~rw~~l~~k~~  111 (126)
T 3osg_A           67 AEEDALLVQKIQEYGR--QWAIIAKFFPGRTDIHIKNRWVTISNKLG  111 (126)
T ss_dssp             HHHHHHHHHHHHHHCS--CHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHCc--CHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence            6999999999999999  99999999999999999999999887753

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.07  E-value=1.3e-10  Score=83.93  Aligned_cols=46  Identities=22%  Similarity=0.326  Sum_probs=41.1

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCC--CCChHHHHHHHHHHHHhhh
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLP--GRTDNEIKNYWNTHIRRKL   48 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~Lp--GRTdn~IKNrWn~~lrrkl   48 (243)
                      +|||++|+++|..||.. +|..||+.+|  |||+.+||+||..+++..+
T Consensus        16 ~eED~~L~~~V~~~G~~-~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl   63 (64)
T 3sjm_A           16 VEESEWVKAGVQKYGEG-NWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   63 (64)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHccCCC-chHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence            79999999999999932 8999999866  9999999999999887653

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.03  E-value=1.7e-10  Score=81.40  Aligned_cols=41  Identities=17%  Similarity=0.228  Sum_probs=38.7

Q ss_pred             hhhHHHHHHHHHHhC-CcCcHHHHhccCC-CCChHHHHHHHHHHH
Q 026135            2 KKMNSLSNSIASLVT-SKSSWSLIAGRLP-GRTDNEIKNYWNTHI   44 (243)
Q Consensus         2 ~EEDelLi~l~s~~G-n~~kWs~IA~~Lp-GRTdn~IKNrWn~~l   44 (243)
                      +|||++|++++.++| .  +|..||++|+ |||+++|++||+.+.
T Consensus        14 ~eED~~L~~~v~~~G~~--~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A           14 ADEELLLIDACETLGLG--NWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             HHHHHHHHHHHHHTTTT--CHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHCcC--CHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            699999999999999 7  9999999999 999999999998763

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.01  E-value=2.3e-10  Score=85.16  Aligned_cols=42  Identities=12%  Similarity=0.257  Sum_probs=39.5

Q ss_pred             hhhHHHHHHHHHHhC----CcCcHHHHhccCCCCChHHHHHHHHHHHH
Q 026135            2 KKMNSLSNSIASLVT----SKSSWSLIAGRLPGRTDNEIKNYWNTHIR   45 (243)
Q Consensus         2 ~EEDelLi~l~s~~G----n~~kWs~IA~~LpGRTdn~IKNrWn~~lr   45 (243)
                      +|||.+|++++..||    +  +|..||.+|||||+++|++||+.+++
T Consensus        23 ~eEd~~L~~al~~~g~~~~~--rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           23 QNQQKLLELALQQYPRGSSD--CWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             HHHHHHHHHHHHHSCSSSHH--HHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCCCCc--hHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            689999999999999    7  99999999999999999999998754

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=98.90  E-value=7.8e-10  Score=85.13  Aligned_cols=47  Identities=23%  Similarity=0.480  Sum_probs=41.9

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhh
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLL   49 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~   49 (243)
                      +|||++|++++..||.. +|..||..|||||+.+|+.||..++.+.+.
T Consensus         9 ~eED~~L~~~v~~~g~~-~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~   55 (105)
T 1gv2_A            9 KEEDQRVIKLVQKYGPK-RWSVIAKHLKGRIGKQCRERWHNHLNPEVK   55 (105)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHTTSTTCCHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHHHHhCCC-cHHHHhhhhcCCCHHHHHHHHHhccCCccc
Confidence            79999999999999962 699999999999999999999998765443

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=98.90  E-value=9.7e-10  Score=87.81  Aligned_cols=54  Identities=13%  Similarity=0.351  Sum_probs=47.4

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhhCCCCCCC
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPAT   57 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~~~~~p~t   57 (243)
                      +|||++|++++..||.  +|..||..||||++.+|+.||..++.+.+....|++.+
T Consensus        16 ~eED~~L~~~v~~~G~--~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eE   69 (126)
T 3osg_A           16 PEEDEMLKRAVAQHGS--DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEE   69 (126)
T ss_dssp             HHHHHHHHHHHHHHTT--CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHH
T ss_pred             HHHHHHHHHHHHHhCC--CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHH
Confidence            6999999999999999  99999999999999999999999987766655544443

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.90  E-value=1.7e-09  Score=83.85  Aligned_cols=51  Identities=20%  Similarity=0.330  Sum_probs=43.6

Q ss_pred             hhhHHHHHHHHHHhC----CcCcHHHHhccCCCCChHHHHHHHHHHHHhh-hhhCCCC
Q 026135            2 KKMNSLSNSIASLVT----SKSSWSLIAGRLPGRTDNEIKNYWNTHIRRK-LLNRGID   54 (243)
Q Consensus         2 ~EEDelLi~l~s~~G----n~~kWs~IA~~LpGRTdn~IKNrWn~~lrrk-l~~~~~~   54 (243)
                      .|||++|++++..||    +  +|..||..|||||+++||+||+.+++.. ....|..
T Consensus        13 ~eEd~~L~~al~~~~~~~~~--rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~v   68 (93)
T 2cjj_A           13 AKENKAFERALAVYDKDTPD--RWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKV   68 (93)
T ss_dssp             HHHHHHHHHHHHHSCTTCTT--HHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHcCCCCCc--hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCC
Confidence            689999999999996    6  9999999999999999999999988764 3334443

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=98.87  E-value=1e-09  Score=87.53  Aligned_cols=51  Identities=22%  Similarity=0.368  Sum_probs=43.9

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhhCCC
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGI   53 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~~~~   53 (243)
                      +|||++|++++..||.. +|..||..|||||+.+|++||+.++.+.+....|
T Consensus        32 ~eED~~L~~~v~~~g~~-~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~W   82 (128)
T 1h8a_C           32 KEEDQRVIEHVQKYGPK-RWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSW   82 (128)
T ss_dssp             HHHHHHHHHHHHHTCSC-CHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCC
T ss_pred             HHHHHHHHHHHHHHCCC-CHHHHHHHhcCCcHHHHHHHHHHhcccccccccC
Confidence            69999999999999952 6999999999999999999999988765544333

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=98.87  E-value=2.9e-09  Score=80.92  Aligned_cols=46  Identities=15%  Similarity=0.185  Sum_probs=42.1

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhcc----CCCCChHHHHHHHHHHHHhhh
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGR----LPGRTDNEIKNYWNTHIRRKL   48 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~----LpGRTdn~IKNrWn~~lrrkl   48 (243)
                      +|||++|+++|..||.. +|+.|++.    |+|||+++||+||+.+++..-
T Consensus         5 ~eEd~~L~~gv~k~G~g-~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~   54 (83)
T 2ckx_A            5 VAEVEALVEAVEHLGTG-RWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             HHHHHHHHHHHHHHCSS-CHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCC-CcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence            69999999999999954 99999996    899999999999999988664

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=98.85  E-value=1.5e-09  Score=89.29  Aligned_cols=49  Identities=22%  Similarity=0.465  Sum_probs=42.9

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhhC
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNR   51 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~~   51 (243)
                      +|||++|+++|..+|.. +|..||..|||||+++|++||+.++.+.+...
T Consensus        63 ~eEd~~L~~~v~~~g~~-~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~  111 (159)
T 1h89_C           63 KEEDQRVIKLVQKYGPK-RWSVIAKHLKGRIGKQCRERWHNHLNPEVKKT  111 (159)
T ss_dssp             HHHHHHHHHHHHHHCSC-CHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCS
T ss_pred             hHHHHHHHHHHHHhCcc-cHHHHHHHcCCCCHHHHHHHHHHHhCcccccc
Confidence            69999999999999952 69999999999999999999999886554433

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=98.84  E-value=1.7e-09  Score=83.96  Aligned_cols=54  Identities=17%  Similarity=0.270  Sum_probs=46.1

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhhCCCCCC
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPA   56 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~~~~~p~   56 (243)
                      +|||++|++++..||.. +|..||..|||||+.+|+.||..++.+.+....|++.
T Consensus         6 ~eED~~L~~~v~~~g~~-~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~e   59 (107)
T 2k9n_A            6 EEEDLKLQQLVMRYGAK-DWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPE   59 (107)
T ss_dssp             HHHHHHHHHHHHHHCSS-CHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHH
T ss_pred             HHHHHHHHHHHHHHCCC-CHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHH
Confidence            69999999999999942 8999999999999999999999998766554444433

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.82  E-value=4e-09  Score=76.67  Aligned_cols=44  Identities=14%  Similarity=0.141  Sum_probs=40.9

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHh---ccCCCCChHHHHHHHHHHHHhh
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIA---GRLPGRTDNEIKNYWNTHIRRK   47 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA---~~LpGRTdn~IKNrWn~~lrrk   47 (243)
                      +|||+.|+++|.+||.  +|+.|+   .+|+|||+-.||++|+.++|+.
T Consensus        13 ~EE~~~L~~gV~k~G~--~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~   59 (62)
T 1x58_A           13 KEEVNYLFHGVKTMGN--HWNSILWSFPFQKGRRAVDLAHKYHRLISGP   59 (62)
T ss_dssp             HHHHHHHHHHHHHHCS--CHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHhH--hHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence            7999999999999999  999999   6889999999999999987753

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=98.77  E-value=3.9e-09  Score=84.64  Aligned_cols=57  Identities=16%  Similarity=0.388  Sum_probs=49.2

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhhCCCCCCCCC
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHR   59 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~~~~~p~t~r   59 (243)
                      +|||++|++++..+|.. +|..||..|||||+.+|+.||..++.+.+....|++.+..
T Consensus         7 ~eED~~L~~~v~~~g~~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~   63 (131)
T 3zqc_A            7 EAEDDLIREYVKENGPQ-NWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDE   63 (131)
T ss_dssp             HHHHHHHHHHHHHHCSC-CGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHH
T ss_pred             HHHHHHHHHHHHHhCcC-CHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHH
Confidence            79999999999999932 8999999999999999999999999887776666655443

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=98.74  E-value=3.5e-09  Score=79.55  Aligned_cols=40  Identities=13%  Similarity=0.175  Sum_probs=38.2

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHH
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTH   43 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~   43 (243)
                      +|||++|++++.+||.  +|..||.+|+|||+.+|++||..+
T Consensus        23 ~eEd~~Ll~~v~~~G~--~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           23 EQETLLLLEALEMYKD--DWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             HHHHHHHHHHHHHSSS--CHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHhCC--CHHHHHHHcCCCCHHHHHHHHHHh
Confidence            6999999999999998  999999999999999999999765

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=98.65  E-value=3.8e-08  Score=79.71  Aligned_cols=46  Identities=15%  Similarity=0.185  Sum_probs=41.8

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhcc----CCCCChHHHHHHHHHHHHhhh
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGR----LPGRTDNEIKNYWNTHIRRKL   48 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~----LpGRTdn~IKNrWn~~lrrkl   48 (243)
                      +|||++|+++|..||.. +|+.|++.    |+|||+++||+||+.+++...
T Consensus        22 ~EEd~~L~~gV~k~G~G-~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~   71 (121)
T 2juh_A           22 VAEVEALVEAVEHLGTG-RWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   71 (121)
T ss_dssp             HHHHHHHHHHHHHHGGG-CHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCC-CHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence            69999999999999954 99999998    599999999999999998653

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=98.64  E-value=5.1e-08  Score=77.15  Aligned_cols=46  Identities=13%  Similarity=0.128  Sum_probs=41.3

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccC----CCCChHHHHHHHHHHHHhhh
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRL----PGRTDNEIKNYWNTHIRRKL   48 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~L----pGRTdn~IKNrWn~~lrrkl   48 (243)
                      +|||++|+++|..||.. +|+.|++.+    +|||+++||+||..+++...
T Consensus        18 ~EEd~~L~~gV~k~G~g-~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~   67 (105)
T 2aje_A           18 VAEVEALVQAVEKLGTG-RWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK   67 (105)
T ss_dssp             HHHHHHHHHHHHHHCSS-SHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHhCCC-ChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence            69999999999999954 999999965    89999999999999887653

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=98.50  E-value=1.6e-07  Score=76.09  Aligned_cols=46  Identities=17%  Similarity=0.229  Sum_probs=41.4

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhcc----CCCCChHHHHHHHHHHHHhhh
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGR----LPGRTDNEIKNYWNTHIRRKL   48 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~----LpGRTdn~IKNrWn~~lrrkl   48 (243)
                      +|||++|+++|..||.. +|+.|++.    |+|||+.+||+||..+++..-
T Consensus        36 ~EEd~~L~~gV~k~G~g-~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~   85 (122)
T 2roh_A           36 VAEVELLVEAVEHLGTG-RWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS   85 (122)
T ss_dssp             HHHHHHHHHHHHHHSSS-CHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCC-ChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence            69999999999999954 99999997    499999999999999987653

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.44  E-value=1.7e-07  Score=66.59  Aligned_cols=42  Identities=12%  Similarity=0.121  Sum_probs=39.2

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHH
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIR   45 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lr   45 (243)
                      +||++++++++..+|.  +|..||.+|||||..+|.++|+...+
T Consensus        17 ~eE~~~F~~~~~~~gk--~w~~Ia~~l~~rt~~~~v~~Yy~~Kk   58 (61)
T 2eqr_A           17 DHEKEIFKDKFIQHPK--NFGLIASYLERKSVPDCVLYYYLTKK   58 (61)
T ss_dssp             HHHHHHHHHHHHHSTT--CHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhCC--CHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence            7999999999999998  99999999999999999999987643

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=98.41  E-value=2.8e-08  Score=81.70  Aligned_cols=54  Identities=19%  Similarity=0.402  Sum_probs=16.0

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhhCCCCCC
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPA   56 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~~~~~p~   56 (243)
                      +|||++|++++..+|.. +|..||..||||+..+|+.||..++.+.+....|++.
T Consensus        11 ~eED~~L~~~v~~~g~~-~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~e   64 (159)
T 1h89_C           11 REEDEKLKKLVEQNGTD-DWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKE   64 (159)
T ss_dssp             ---------------------------------CHHHHHHTTTCTTCCCSCCCHH
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChH
Confidence            69999999999999942 8999999999999999999999988776554444443

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.36  E-value=3.1e-07  Score=67.97  Aligned_cols=44  Identities=16%  Similarity=0.124  Sum_probs=39.7

Q ss_pred             hhhHHHHHHHHHHhC----CcCcHHHHhccCCCCChHHHHHHHHHHHHhhh
Q 026135            2 KKMNSLSNSIASLVT----SKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKL   48 (243)
Q Consensus         2 ~EEDelLi~l~s~~G----n~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl   48 (243)
                      +|||.+|.+++..|+    +  +|..||.+| |||..+|++||+.+.+...
T Consensus        13 ~eE~k~fe~al~~~p~~t~~--RW~~IA~~l-gRt~~eV~~~y~~L~~d~~   60 (72)
T 2cqq_A           13 EEDLSQLTRSMVKFPGGTPG--RWEKIAHEL-GRSVTDVTTKAKQLKDSVT   60 (72)
T ss_dssp             HHHHHHHHHHHHHSCTTCTT--HHHHHHHHH-TSCHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHCCCCCCc--HHHHHHHHh-CCCHHHHHHHHHHHHHhcC
Confidence            689999999999997    5  999999998 9999999999998866643

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.28  E-value=1.2e-06  Score=68.16  Aligned_cols=49  Identities=12%  Similarity=0.105  Sum_probs=46.0

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccC-----CCCChHHHHHHHHHHHHhhhhhCC
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRL-----PGRTDNEIKNYWNTHIRRKLLNRG   52 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~L-----pGRTdn~IKNrWn~~lrrkl~~~~   52 (243)
                      +||++.|++|+..||-  +|..|+.++     ++||..+||+||+..+++.++.++
T Consensus        35 kEETd~Lf~L~~~fdl--RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~   88 (93)
T 3hm5_A           35 KAETDHLFDLSRRFDL--RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             HHHHHHHHHHHHHTTT--CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhCC--CeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            6999999999999999  999999999     589999999999999999888764

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.08  E-value=1.8e-06  Score=76.76  Aligned_cols=43  Identities=14%  Similarity=0.198  Sum_probs=41.1

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHh
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRR   46 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrr   46 (243)
                      +||++++++.+..||+  .|..||+.+++||.++||++|+.+.++
T Consensus       138 eEE~~lFleAl~kYGK--DW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          138 TEEQLLAVQAIRKYGR--DFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             HHHHHHHHHHHHHHSS--CHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHCc--CHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            6899999999999999  999999999999999999999988766

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=97.29  E-value=0.00025  Score=50.37  Aligned_cols=44  Identities=11%  Similarity=0.163  Sum_probs=39.3

Q ss_pred             ChhhHHHHHHHHHHh--------CCcCcHHHHhc-cCCCCChHHHHHHHHHHHH
Q 026135            1 MKKMNSLSNSIASLV--------TSKSSWSLIAG-RLPGRTDNEIKNYWNTHIR   45 (243)
Q Consensus         1 ~~EEDelLi~l~s~~--------Gn~~kWs~IA~-~LpGRTdn~IKNrWn~~lr   45 (243)
                      .+|||++|++.+.++        ||. -|..++. .+|++|-.++|+||..+|+
T Consensus         6 T~edD~~L~~~v~~~~~~~~~~~Gn~-iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            6 TDADDVAILTYVKENARSPSSVTGNA-LWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CHHHHHHHHHHHHHTCCSTTTTTSSH-HHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhccccCCCccHH-HHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            369999999999999        863 6999999 8999999999999988764

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.23  E-value=0.0003  Score=54.73  Aligned_cols=45  Identities=11%  Similarity=0.235  Sum_probs=39.8

Q ss_pred             hhhHHHHHHHHHHhCC-cCcHHHHhccCCCCChHHHHHHHHHHHHh
Q 026135            2 KKMNSLSNSIASLVTS-KSSWSLIAGRLPGRTDNEIKNYWNTHIRR   46 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn-~~kWs~IA~~LpGRTdn~IKNrWn~~lrr   46 (243)
                      .|||..|+...++.|. ...|+.||+.|.+|+.++|+|||+.+|+=
T Consensus        38 Re~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L   83 (95)
T 1ug2_A           38 READRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL   83 (95)
T ss_dssp             HHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            6899999999999994 22699999999999999999999987653

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=97.19  E-value=0.00034  Score=52.02  Aligned_cols=44  Identities=16%  Similarity=0.191  Sum_probs=36.9

Q ss_pred             hhhHHHHHHHHHHhCC--cCcHHHHhccCCCCChHHHHHHHHHHHH
Q 026135            2 KKMNSLSNSIASLVTS--KSSWSLIAGRLPGRTDNEIKNYWNTHIR   45 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn--~~kWs~IA~~LpGRTdn~IKNrWn~~lr   45 (243)
                      +||+.+|.+....|+.  ..+|..||..+||||..+|+.||..+++
T Consensus        13 ~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A           13 EKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR   58 (73)
T ss_dssp             HHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            5889999888888872  0179999999999999999999987633

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=95.96  E-value=0.00014  Score=53.81  Aligned_cols=43  Identities=7%  Similarity=0.214  Sum_probs=37.8

Q ss_pred             hhhHHHHHHHHHHhCC-cCcHHHHhccCCCCChHHHHHHHHHHHH
Q 026135            2 KKMNSLSNSIASLVTS-KSSWSLIAGRLPGRTDNEIKNYWNTHIR   45 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn-~~kWs~IA~~LpGRTdn~IKNrWn~~lr   45 (243)
                      .|||..|+....+-|. ...|+.||..| +|+.++|++||..+++
T Consensus        19 ReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           19 RNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            5899999999999994 12699999999 9999999999987764

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=96.56  E-value=0.0045  Score=48.07  Aligned_cols=49  Identities=12%  Similarity=0.104  Sum_probs=44.5

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCC-----CCChHHHHHHHHHHHHhhhhhCC
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLP-----GRTDNEIKNYWNTHIRRKLLNRG   52 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~Lp-----GRTdn~IKNrWn~~lrrkl~~~~   52 (243)
                      +||-+.|++|...|+-  +|..|+.++.     .||-.++|.||+...++.+..+.
T Consensus        35 ~eETd~LfdLc~~fdl--Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~   88 (93)
T 4iej_A           35 KAETDHLFDLSRRFDL--RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             HHHHHHHHHHHHHTTT--CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHcCC--CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence            6899999999999999  9999999984     79999999999999888877653

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=95.34  E-value=0.004  Score=46.55  Aligned_cols=40  Identities=23%  Similarity=0.318  Sum_probs=33.2

Q ss_pred             hhhHHHHHHHHHHhCC--cCcHHHHhccCCCCChHHHHHHHH
Q 026135            2 KKMNSLSNSIASLVTS--KSSWSLIAGRLPGRTDNEIKNYWN   41 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn--~~kWs~IA~~LpGRTdn~IKNrWn   41 (243)
                      .||+.++.++...|+.  ..+|.+||..+||||..+|+.+|.
T Consensus        25 ~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           25 FSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             TTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            5788888888777772  127999999999999999999874

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=95.05  E-value=0.032  Score=42.68  Aligned_cols=40  Identities=18%  Similarity=0.107  Sum_probs=36.9

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHH
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTH   43 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~   43 (243)
                      +||-++..+.+..+|.  .|..||..||+||..+|-.+|+.+
T Consensus        48 ~eE~~~F~~~~~~~gK--~F~~Ia~~l~~Kt~~~cV~~YY~~   87 (94)
T 4a69_C           48 EQEKETFREKFMQHPK--NFGLIASFLERKTVAECVLYYYLT   87 (94)
T ss_dssp             HHHHHHHHHHHHHSTT--CHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC--CHHHHHHHcCCCCHHHHHHHHhcc
Confidence            6788899999999998  999999999999999999988764

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.89  E-value=0.034  Score=39.38  Aligned_cols=40  Identities=10%  Similarity=0.047  Sum_probs=36.0

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhc-cCCCCChHHHHHHHHHH
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAG-RLPGRTDNEIKNYWNTH   43 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~-~LpGRTdn~IKNrWn~~   43 (243)
                      +||-++-.+.+..+|.  .|..|++ .||.||-.+|..+|+.+
T Consensus        14 ~eE~~~Fe~~l~~yGK--df~~I~~~~v~~Kt~~~~v~fYY~w   54 (63)
T 2yqk_A           14 EDEVKRFVKGLRQYGK--NFFRIRKELLPNKETGELITFYYYW   54 (63)
T ss_dssp             HHHHHHHHHHHHHTCS--CHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCc--cHHHHHHHHcCCCcHHHHHHHHhcc
Confidence            5788888899999998  9999999 69999999999998754

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=94.31  E-value=0.045  Score=49.00  Aligned_cols=28  Identities=11%  Similarity=0.164  Sum_probs=26.1

Q ss_pred             cHHHHhccCCCCChHHHHHHHHHHHHhh
Q 026135           20 SWSLIAGRLPGRTDNEIKNYWNTHIRRK   47 (243)
Q Consensus        20 kWs~IA~~LpGRTdn~IKNrWn~~lrrk   47 (243)
                      .|..||+.+|+||++++|+||..++++.
T Consensus       173 ~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          173 FFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence            7999999999999999999999888774

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=93.37  E-value=0.13  Score=37.15  Aligned_cols=40  Identities=15%  Similarity=0.122  Sum_probs=35.9

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhc-cCCCCChHHHHHHHHHH
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAG-RLPGRTDNEIKNYWNTH   43 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~-~LpGRTdn~IKNrWn~~   43 (243)
                      +||-.+-.+.+..+|.  .|..|++ .||+||-.+|..+|+.+
T Consensus        13 ~eE~~~Fe~~l~~yGK--df~~I~~~~v~~Kt~~~~v~fYY~w   53 (70)
T 2crg_A           13 ASEACLFEEALEKYGK--DFNDIRQDFLPWKSLTSIIEYYYMW   53 (70)
T ss_dssp             HHHHHHHHHHHHHTCS--CHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCc--cHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            5788888899999998  9999999 69999999999998754

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=93.20  E-value=0.058  Score=52.32  Aligned_cols=43  Identities=14%  Similarity=0.198  Sum_probs=38.6

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHh
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRR   46 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrr   46 (243)
                      +||-++.++.+.+||.  .|..||..+..||..+||++|..+-++
T Consensus       385 ~eE~~~f~~al~~yGk--dw~~IA~~VgTKT~~Qvk~fy~~~kkr  427 (482)
T 2xag_B          385 TEEQLLAVQAIRKYGR--DFQAISDVIGNKSVVQVKNFFVNYRRR  427 (482)
T ss_dssp             HHHHHHHHHHHHHHTT--CHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHCc--CHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            5788999999999998  999999999999999999999865443

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=91.44  E-value=0.16  Score=37.30  Aligned_cols=48  Identities=10%  Similarity=0.210  Sum_probs=36.6

Q ss_pred             hhhHHHHHHHHHHhCC--------cCcHHHHhccCC----CCChHHHHHHHHHHHHhhhh
Q 026135            2 KKMNSLSNSIASLVTS--------KSSWSLIAGRLP----GRTDNEIKNYWNTHIRRKLL   49 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn--------~~kWs~IA~~Lp----GRTdn~IKNrWn~~lrrkl~   49 (243)
                      ++|-.+||+++.++-.        ...|..||..|.    .||+.+|+++|..+.+....
T Consensus         9 ~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~   68 (86)
T 2ebi_A            9 QDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKK   68 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            5677888888876332        015999999974    79999999999997776533

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	243
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	3e-07
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	4e-07
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	4e-06
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	8e-06
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	6e-05
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	8e-05
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-04
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	0.004

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.0 bits (104), Expect = 3e-07
 Identities = 16/25 (64%), Positives = 20/25 (80%)

Query: 21 WSLIAGRLPGRTDNEIKNYWNTHIR 45
          W+ IA  LPGRTDN IKN+WN+ +R
Sbjct: 23 WAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.6 bits (105), Expect = 4e-07
 Identities = 7/47 (14%), Positives = 23/47 (48%)

Query: 2  KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKL 48
          + +  +     +  T+ + +  I+  +P  T N I++ +  ++ ++L
Sbjct: 10 EFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 56

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (97), Expect = 4e-06
 Identities = 5/26 (19%), Positives = 15/26 (57%)

Query: 21 WSLIAGRLPGRTDNEIKNYWNTHIRR 46
          +  I+  +  ++  ++KN++  + RR
Sbjct: 27 FQAISDVIGNKSVVQVKNFFVNYRRR 52

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (95), Expect = 8e-06
 Identities = 7/26 (26%), Positives = 11/26 (42%)

Query: 21 WSLIAGRLPGRTDNEIKNYWNTHIRR 46
          + LIA  L  +T  E   Y+    + 
Sbjct: 39 FGLIASFLERKTVAECVLYYYLTKKN 64

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (88), Expect = 6e-05
 Identities = 7/28 (25%), Positives = 16/28 (57%)

Query: 21 WSLIAGRLPGRTDNEIKNYWNTHIRRKL 48
          W+ I+  +  RT  ++K+Y   + + K+
Sbjct: 24 WTKISKLIGSRTVLQVKSYARQYFKNKV 51

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (86), Expect = 8e-05
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 20 SWSLIAGRLPGRTDNEIKNYWNTHIR 45
           WS+IA  L GR   + +  W+ H+ 
Sbjct: 25 RWSVIAKHLKGRIGKQCRERWHNHLN 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.7 bits (85), Expect = 1e-04
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 20 SWSLIAGRLPGRTDNEIKNYWNTHIR 45
           W +IA  LP RTD + ++ W   + 
Sbjct: 23 DWKVIANYLPNRTDVQCQHRWQKVLN 48

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 32.6 bits (74), Expect = 0.004
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 21 WSLIAGRLPGRTDNEIKNYWNTHIR 45
          W+ +A  + GRT  E+K ++   + 
Sbjct: 27 WANVARAVEGRTPEEVKKHYEILVE 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	243
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.54
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.35
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.25
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.22
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.16
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	98.93
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	98.92
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	98.9
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.89
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	98.85
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.74
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	98.73
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.62
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.61
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	96.18
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	95.67
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	91.81
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	87.15

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=2.5e-15  Score=101.51  Aligned_cols=42  Identities=38%  Similarity=0.672  Sum_probs=40.5

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHH
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIR   45 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lr   45 (243)
                      +|||++|+++|.++|+  +|+.||.+|||||+++|||||+.++|
T Consensus         6 ~eED~~L~~~v~~~G~--~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           6 EEEDRIIYQAHKRLGN--RWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             HHHHHHHHHHHHHHSS--CHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhh--HHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            7999999999999999  99999999999999999999999875

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=2.1e-13  Score=102.56  Aligned_cols=62  Identities=10%  Similarity=0.132  Sum_probs=57.5

Q ss_pred             hhhHHHHHHHHHHhCCcCc------HHHHhccCCCCChHHHHHHHHHHHHhhhhhCCCCCCCCCCCCCCC
Q 026135            2 KKMNSLSNSIASLVTSKSS------WSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEPA   65 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~k------Ws~IA~~LpGRTdn~IKNrWn~~lrrkl~~~~~~p~t~rpl~~~~   65 (243)
                      +|||++|+++|.++|.  +      |..||.+|||||+++||+||+.+|.+.+....+++...+.+-...
T Consensus         6 ~eED~~L~~~v~~~g~--~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~   73 (86)
T d1igna1           6 DEEDEFILDVVRKNPT--RRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDD   73 (86)
T ss_dssp             HHHHHHHHHHHHTSGG--GTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTT
T ss_pred             HHHHHHHHHHHHHhCc--CcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHh
Confidence            7999999999999997  5      999999999999999999999999999999999999998876543

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=2.1e-12  Score=88.43  Aligned_cols=44  Identities=25%  Similarity=0.498  Sum_probs=40.7

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHh
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRR   46 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrr   46 (243)
                      +|||++|++++.++|.. +|..||++|+|||+.+|++||+.+|++
T Consensus         8 ~eED~~L~~~v~~~g~~-~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           8 KEEDQRLIKLVQKYGPK-RWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHCCC-CHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            69999999999999942 899999999999999999999998865

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=3.7e-12  Score=86.24  Aligned_cols=44  Identities=20%  Similarity=0.465  Sum_probs=40.7

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHh
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRR   46 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrr   46 (243)
                      +|||++|++++..+|.. +|..||.+|||||+.+|++||+.+|.+
T Consensus         6 ~eED~~L~~~v~~~g~~-~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           6 REEDEKLKKLVEQNGTD-DWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             HHHHHHHHHHHHHHCSS-CHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHCCC-CHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            69999999999999942 899999999999999999999998864

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.6e-11  Score=86.23  Aligned_cols=47  Identities=17%  Similarity=0.193  Sum_probs=44.2

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhh
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLN   50 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~   50 (243)
                      +|||++|++++..||.  +|..||.+|||||+.+|++||+.++++..+.
T Consensus         7 ~eEd~~l~~~~~~~G~--~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~   53 (65)
T d2cu7a1           7 IEEKELFEQGLAKFGR--RWTKISKLIGSRTVLQVKSYARQYFKNKVKC   53 (65)
T ss_dssp             HHHHHHHHHHHHHTCS--CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHHHHhcc--hHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            6999999999999998  9999999999999999999999999887654

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=4.7e-10  Score=77.10  Aligned_cols=47  Identities=19%  Similarity=0.263  Sum_probs=40.9

Q ss_pred             ChhhHHHHHHHHHHhCCcCcHHHHhcc--CCCCChHHHHHHHHHHHHhhh
Q 026135            1 MKKMNSLSNSIASLVTSKSSWSLIAGR--LPGRTDNEIKNYWNTHIRRKL   48 (243)
Q Consensus         1 ~~EEDelLi~l~s~~Gn~~kWs~IA~~--LpGRTdn~IKNrWn~~lrrkl   48 (243)
                      .+|||++|++++.+||.. +|..||+.  |+|||+.+|++||+.+++..+
T Consensus         6 T~eEd~~L~~~V~~~G~~-~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~   54 (55)
T d1w0ua_           6 TVEESEWVKAGVQKYGEG-NWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   54 (55)
T ss_dssp             CHHHHHHHHHHHHHHCTT-CHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCCC-hHHHHHhhcCCCCcCHHHHHHHHHHHhcCCC
Confidence            369999999999999942 89999997  569999999999998877643

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=5.7e-10  Score=75.94  Aligned_cols=43  Identities=21%  Similarity=0.202  Sum_probs=38.1

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCC--CCChHHHHHHHHHHHH
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLP--GRTDNEIKNYWNTHIR   45 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~Lp--GRTdn~IKNrWn~~lr   45 (243)
                      +|||++|++++.+||.. +|..||..++  |||+.+|++||+.+.+
T Consensus         7 ~eED~~L~~~v~~~G~~-~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           7 WEEDKNLRSGVRKYGEG-NWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHCCC-CHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            69999999999999942 8999999854  9999999999988653

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=5.1e-10  Score=74.78  Aligned_cols=41  Identities=10%  Similarity=0.063  Sum_probs=38.0

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHH
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTH   43 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~   43 (243)
                      +|||++|++++..+|.. +|..||.+|+|||+.+|++||+.+
T Consensus         6 ~eEd~~L~~~v~~~G~~-nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           6 AQEEMALLEAVMDCGFG-NWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             HHHHHHHHHHHHHTCTT-CHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCc-cHHHHHHHcCCCCHHHHHHHHHHh
Confidence            68999999999999942 799999999999999999999865

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=8.6e-10  Score=84.34  Aligned_cols=46  Identities=11%  Similarity=0.179  Sum_probs=42.2

Q ss_pred             hhhHHHHHHHHHHhCCcCc---HHHHhccCCCCChHHHHHHHHHHHHhhhh
Q 026135            2 KKMNSLSNSIASLVTSKSS---WSLIAGRLPGRTDNEIKNYWNTHIRRKLL   49 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~k---Ws~IA~~LpGRTdn~IKNrWn~~lrrkl~   49 (243)
                      +|||++|++.+.++|+  +   |..||++|+||++++|||||..+|+-.-.
T Consensus        38 rEEDriIL~~~q~~G~--~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf~~   86 (95)
T d1ug2a_          38 READRVILTMCQEQGA--QPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT   86 (95)
T ss_dssp             HHHHHHHHHHHHHTTS--CTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC--cHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            6999999999999997  7   99999999999999999999988876543

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=98.85  E-value=1.4e-09  Score=76.21  Aligned_cols=45  Identities=20%  Similarity=0.355  Sum_probs=39.0

Q ss_pred             hhhHHHHHHHHHHhCCc--CcHHHHhccCCCCChHHHHHHHHHHHHh
Q 026135            2 KKMNSLSNSIASLVTSK--SSWSLIAGRLPGRTDNEIKNYWNTHIRR   46 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~--~kWs~IA~~LpGRTdn~IKNrWn~~lrr   46 (243)
                      +|||++|++++..||..  .+|..||.+|||||+++|++||+.+++.
T Consensus         6 ~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~d   52 (63)
T d2cjja1           6 AKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED   52 (63)
T ss_dssp             HHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            69999999999999941  1599999999999999999999766543

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=5.8e-09  Score=72.29  Aligned_cols=41  Identities=15%  Similarity=0.259  Sum_probs=36.8

Q ss_pred             hhhHHHHHHHHHHhCCcC--cHHHHhccCCCCChHHHHHHHHH
Q 026135            2 KKMNSLSNSIASLVTSKS--SWSLIAGRLPGRTDNEIKNYWNT   42 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~--kWs~IA~~LpGRTdn~IKNrWn~   42 (243)
                      +|||++|++++..||...  +|..||..|||||+.+|++||..
T Consensus        17 ~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~   59 (60)
T d2cqra1          17 QNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL   59 (60)
T ss_dssp             HHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHH
Confidence            699999999999999410  59999999999999999999975

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.73  E-value=7e-09  Score=76.40  Aligned_cols=48  Identities=15%  Similarity=0.195  Sum_probs=42.5

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhcc----CCCCChHHHHHHHHHHHHhhhhh
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGR----LPGRTDNEIKNYWNTHIRRKLLN   50 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~----LpGRTdn~IKNrWn~~lrrkl~~   50 (243)
                      +|||++|++++..||.. +|..|++.    ++|||+.+||+||+.+++.....
T Consensus         5 ~eEd~~L~~~V~~~G~~-~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~   56 (83)
T d2ckxa1           5 VAEVEALVEAVEHLGTG-RWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIA   56 (83)
T ss_dssp             HHHHHHHHHHHHHHCSS-CHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHCcc-cHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccC
Confidence            69999999999999942 89999985    79999999999999999876544

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.1e-08  Score=71.73  Aligned_cols=43  Identities=14%  Similarity=0.198  Sum_probs=40.3

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHh
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRR   46 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrr   46 (243)
                      +|||+++++++..+|.  .|..||..|||||..+|++||+.+.++
T Consensus        10 ~eE~~~f~~~~~~~G~--~w~~Ia~~~~~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1          10 TEEQLLAVQAIRKYGR--DFQAISDVIGNKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             HHHHHHHHHHHHHHSS--CHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHhCc--hHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence            6899999999999999  999999999999999999999987654

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=8.3e-09  Score=73.00  Aligned_cols=40  Identities=18%  Similarity=0.107  Sum_probs=38.1

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHH
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTH   43 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~   43 (243)
                      +|||+++++++..+|.  +|..||..|||||..+|+++|+.+
T Consensus        22 ~eE~~~f~~~~~~~G~--~w~~Ia~~~~~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          22 EQEKETFREKFMQHPK--NFGLIASFLERKTVAECVLYYYLT   61 (68)
T ss_dssp             TTTHHHHHHHHHHTTS--CSSSHHHHTTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCC--cHHHHHHHcCCCCHHHHHHHHHHH
Confidence            6899999999999998  999999999999999999999864

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.18  E-value=0.0037  Score=42.13  Aligned_cols=40  Identities=15%  Similarity=0.146  Sum_probs=36.1

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhcc-CCCCChHHHHHHHHHH
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGR-LPGRTDNEIKNYWNTH   43 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~-LpGRTdn~IKNrWn~~   43 (243)
                      +||-.+..+.+..+|.  .|..|++. +|+||..+|.++|...
T Consensus         6 ~eE~~~F~~~~~~yGK--df~~I~~~~v~~Ks~~~~v~fYY~~   46 (57)
T d2crga1           6 ASEACLFEEALEKYGK--DFNDIRQDFLPWKSLTSIIEYYYMW   46 (57)
T ss_dssp             HHHHHHHHHHHHHTCS--CHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcc--cHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            6889999999999999  99999985 6999999999998753

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.005  Score=42.25  Aligned_cols=38  Identities=18%  Similarity=0.209  Sum_probs=34.2

Q ss_pred             hhhHHHHHHHHHHhC----CcCcHHHHhccCCCCChHHHHHHHHH
Q 026135            2 KKMNSLSNSIASLVT----SKSSWSLIAGRLPGRTDNEIKNYWNT   42 (243)
Q Consensus         2 ~EEDelLi~l~s~~G----n~~kWs~IA~~LpGRTdn~IKNrWn~   42 (243)
                      +||+.+|.++...|.    .  +|..||..+ |||..+|..|++.
T Consensus         6 ~ee~~~le~Al~~~P~gt~~--RW~~IA~~v-gkt~~ev~~~~k~   47 (59)
T d2cqqa1           6 EEDLSQLTRSMVKFPGGTPG--RWEKIAHEL-GRSVTDVTTKAKQ   47 (59)
T ss_dssp             HHHHHHHHHHHHHSCTTCTT--HHHHHHHHH-TSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCcH--HHHHHHHHH-CCCHHHHHHHHHH
Confidence            689999999999996    4  899999999 9999999999864

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.81  E-value=0.095  Score=35.57  Aligned_cols=43  Identities=12%  Similarity=0.172  Sum_probs=35.9

Q ss_pred             hhhHHHHHHHHHHh--------CCcCcHHHHhc-cCCCCChHHHHHHHHHHHH
Q 026135            2 KKMNSLSNSIASLV--------TSKSSWSLIAG-RLPGRTDNEIKNYWNTHIR   45 (243)
Q Consensus         2 ~EEDelLi~l~s~~--------Gn~~kWs~IA~-~LpGRTdn~IKNrWn~~lr   45 (243)
                      .|||++|++.+..+        ||. =|..+++ .+|.+|-.+.|+||..+|+
T Consensus         7 ~eeD~~l~~yv~~~~~~~~~~~Gn~-iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           7 DADDVAILTYVKENARSPSSVTGNA-LWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             HHHHHHHHHHHHHTCCSTTTTTSSH-HHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhccCcCCccHHH-HHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            68999999999775        442 4999985 6899999999999987764

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.15  E-value=0.61  Score=30.30  Aligned_cols=40  Identities=13%  Similarity=0.171  Sum_probs=34.0

Q ss_pred             hhhHHHHHHHHHHhCCcCcHHHHhccC---CCCChHHHHHHHHHH
Q 026135            2 KKMNSLSNSIASLVTSKSSWSLIAGRL---PGRTDNEIKNYWNTH   43 (243)
Q Consensus         2 ~EEDelLi~l~s~~Gn~~kWs~IA~~L---pGRTdn~IKNrWn~~   43 (243)
                      +||-..|.+-+..+|+  .|..|==.+   |||+...+...|+.+
T Consensus         6 ~eEv~YL~~GVK~~G~--~WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           6 KEEVNYLFHGVKTMGN--HWNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             HHHHHHHHHHHHHHCS--CHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcc--hhhhhhhccCCCCCchhhHHHHHHHhh
Confidence            6888999999999999  999987655   799999988777654