Citrus Sinensis ID: 026136

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
MAEAAAVVVPESVLKKKKREEEWALAKKQELEAAKKKKAETRKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRRMN
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEcccccccHHHHHHHHHccccccEEEEEEEccHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHccccccHHHHHHHHHHccccHHHcccccccEEccccccccccccccccccccccccHHHHHHHHHHHc
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcccEccccccEEEEEEEEccccccccHHHHHHHHHHHHHHccEEEEEcHHHHHHHHHHcHHEHcccccHHHHHHHHHHccccEEccccEEcccHHHHHHHHccccEEEEHHHEHEHHcccccHHHHHccccccEcccccccccccccEEEEccccccHHHHHHHHHHHcc
MAEAAAVvvpesvlkKKKREEEWALAKKQELEAAKKKKAETRKLIYNRTKQYAKEYDEEQKELIRLKREAKlkggfyvnpeAKLLFIIRIRginavdpkTKKILQLLRLRQIFNGVFLKVNKATLNMLhrvepyvtygypnlkSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILtvgphfkeannflwpfklkaplgglkkkrnhyveggdagnrEDYINELIRRMN
maeaaavvvpesvlkkkkreeEWALAKKQEleaakkkkaetrkliynrtKQYAKEYDEEQKELIRLKReaklkggfyvnpeAKLLFIIRirginavdpKTKKILQLLRLRQIFNGVFLKVNKATLNMLhrvepyvtygypnlkSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKrnhyveggdagnredyiNELIRRMN
MaeaaavvvpesvLKKKKReeewalakkqeleaakkkkaeTRKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFklkaplgglkkkRNHYVEGGDAGNREDYINELIRRMN
*******************************************LIYNR***Y*********ELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKL***********************************
****AAVVVPESVLKKKKREEEWAL********************YNRTKQYAKEYDEEQKELIRL***************AKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRRMN
********VPESVLKKKKREEEWALAKKQELEAAKKKKAETRKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRRMN
*****AVVVPESVLKKKKREEEWALAKKQELEAAKKKKAETRKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRRMN
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAEAAAVVVPESVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIYNRxxxxxxxxxxxxxxxxxxxxxxxxxGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRRMN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query243 2.2.26 [Sep-21-2011]
Q9LHP1244 60S ribosomal protein L7- yes no 1.0 0.995 0.852 1e-121
P60040242 60S ribosomal protein L7- no no 0.983 0.987 0.874 1e-120
P60039242 60S ribosomal protein L7- no no 0.995 1.0 0.860 1e-119
Q58DT1248 60S ribosomal protein L7 yes no 0.971 0.951 0.635 4e-83
P14148270 60S ribosomal protein L7 yes no 0.967 0.870 0.638 5e-83
Q4R506247 60S ribosomal protein L7 N/A no 0.971 0.955 0.631 6e-83
P05426260 60S ribosomal protein L7 yes no 0.967 0.903 0.634 6e-83
P18124248 60S ribosomal protein L7 yes no 0.971 0.951 0.631 9e-83
Q5R9R4247 60S ribosomal protein L7 yes no 0.971 0.955 0.631 1e-82
Q5ZJ56246 60S ribosomal protein L7 yes no 0.954 0.943 0.634 2e-81
>sp|Q9LHP1|RL74_ARATH 60S ribosomal protein L7-4 OS=Arabidopsis thaliana GN=RPL7D PE=2 SV=1 Back     alignment and function desciption
 Score =  434 bits (1116), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/244 (85%), Positives = 232/244 (95%), Gaps = 1/244 (0%)

Query: 1   MAEAAA-VVVPESVLKKKKREEEWALAKKQELEAAKKKKAETRKLIYNRTKQYAKEYDEE 59
           M EA +  VVPESVLKK+KREEEWALAKKQELEAAKK+ AE RKLI+NR KQY+KEY E+
Sbjct: 1   MTEAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEK 60

Query: 60  QKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLK 119
           ++ELI+LKREAKLKGGFYV+PEAKLLFIIRIRGINA+DPKTKKILQLLRLRQIFNGVFLK
Sbjct: 61  ERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLK 120

Query: 120 VNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGI 179
           VNKAT+NML RVEPYVTYGYPNLKSV+ELIYKRG+GKLN QR ALTDNSI++Q LG+HGI
Sbjct: 121 VNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGI 180

Query: 180 ICMEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELI 239
           IC+EDLIHEI+TVGPHFKEANNFLWPF+LKAPLGG+KKKRNHYVEGGDAGNRE++INEL+
Sbjct: 181 ICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELV 240

Query: 240 RRMN 243
           RRMN
Sbjct: 241 RRMN 244

Arabidopsis thaliana (taxid: 3702)
>sp|P60040|RL72_ARATH 60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=1 SV=1 Back     alignment and function description
>sp|P60039|RL73_ARATH 60S ribosomal protein L7-3 OS=Arabidopsis thaliana GN=RPL7C PE=2 SV=1 Back     alignment and function description
>sp|Q58DT1|RL7_BOVIN 60S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=2 SV=1 Back     alignment and function description
>sp|P14148|RL7_MOUSE 60S ribosomal protein L7 OS=Mus musculus GN=Rpl7 PE=2 SV=2 Back     alignment and function description
>sp|Q4R506|RL7_MACFA 60S ribosomal protein L7 OS=Macaca fascicularis GN=RPL7 PE=2 SV=1 Back     alignment and function description
>sp|P05426|RL7_RAT 60S ribosomal protein L7 OS=Rattus norvegicus GN=Rpl7 PE=1 SV=2 Back     alignment and function description
>sp|P18124|RL7_HUMAN 60S ribosomal protein L7 OS=Homo sapiens GN=RPL7 PE=1 SV=1 Back     alignment and function description
>sp|Q5R9R4|RL7_PONAB 60S ribosomal protein L7 OS=Pongo abelii GN=RPL7 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZJ56|RL7_CHICK 60S ribosomal protein L7 OS=Gallus gallus GN=RPL7 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query243
356526310243 PREDICTED: 60S ribosomal protein L7-4-li 1.0 1.0 0.893 1e-123
294438964244 hypothetical protein UP-4 [Dimocarpus lo 1.0 0.995 0.889 1e-122
449447982243 PREDICTED: 60S ribosomal protein L7-4-li 1.0 1.0 0.868 1e-122
388518149243 unknown [Lotus japonicus] 1.0 1.0 0.880 1e-122
255552946243 60S ribosomal protein L7, putative [Rici 1.0 1.0 0.876 1e-122
255566301243 60S ribosomal protein L7, putative [Rici 1.0 1.0 0.872 1e-122
225445899245 PREDICTED: 60S ribosomal protein L7-4 [V 0.991 0.983 0.896 1e-121
388497876245 unknown [Lotus japonicus] 0.991 0.983 0.875 1e-121
351726058242 uncharacterized protein LOC100500011 [Gl 0.995 1.0 0.884 1e-121
357449645244 60S ribosomal protein L7-4 [Medicago tru 0.991 0.987 0.871 1e-120
>gi|356526310|ref|XP_003531761.1| PREDICTED: 60S ribosomal protein L7-4-like [Glycine max] Back     alignment and taxonomy information
 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/243 (89%), Positives = 233/243 (95%)

Query: 1   MAEAAAVVVPESVLKKKKREEEWALAKKQELEAAKKKKAETRKLIYNRTKQYAKEYDEEQ 60
           M E    VVPESVLKK+KREEEWALAKKQ+LEAAKKK+AE+RKLIYNR KQYAKEYD ++
Sbjct: 1   MGEEVKAVVPESVLKKQKREEEWALAKKQDLEAAKKKRAESRKLIYNRAKQYAKEYDHQE 60

Query: 61  KELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKV 120
           KELIRLKREAKLKGGFYV+PEAKLLFI+RIRGINA+DPK++KILQLLRLRQIFNGVFLKV
Sbjct: 61  KELIRLKREAKLKGGFYVDPEAKLLFIVRIRGINAMDPKSRKILQLLRLRQIFNGVFLKV 120

Query: 121 NKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGII 180
           NKAT+NMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQR ALTDNSIIEQALG++GII
Sbjct: 121 NKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRTALTDNSIIEQALGKYGII 180

Query: 181 CMEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIR 240
             EDLIHEI+TVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRE+YINELIR
Sbjct: 181 STEDLIHEIITVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIR 240

Query: 241 RMN 243
           RMN
Sbjct: 241 RMN 243

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|294438964|gb|ACV83305.2| hypothetical protein UP-4 [Dimocarpus longan] Back     alignment and taxonomy information
>gi|449447982|ref|XP_004141745.1| PREDICTED: 60S ribosomal protein L7-4-like [Cucumis sativus] gi|449491808|ref|XP_004159009.1| PREDICTED: 60S ribosomal protein L7-4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|388518149|gb|AFK47136.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|255552946|ref|XP_002517516.1| 60S ribosomal protein L7, putative [Ricinus communis] gi|223543527|gb|EEF45058.1| 60S ribosomal protein L7, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255566301|ref|XP_002524137.1| 60S ribosomal protein L7, putative [Ricinus communis] gi|223536604|gb|EEF38248.1| 60S ribosomal protein L7, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225445899|ref|XP_002262697.1| PREDICTED: 60S ribosomal protein L7-4 [Vitis vinifera] Back     alignment and taxonomy information
>gi|388497876|gb|AFK37004.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|351726058|ref|NP_001235578.1| uncharacterized protein LOC100500011 [Glycine max] gi|255628485|gb|ACU14587.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357449645|ref|XP_003595099.1| 60S ribosomal protein L7-4 [Medicago truncatula] gi|87162669|gb|ABD28464.1| Ribosomal protein L30 [Medicago truncatula] gi|355484147|gb|AES65350.1| 60S ribosomal protein L7-4 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query243
TAIR|locus:2038741242 AT2G01250 [Arabidopsis thalian 0.946 0.950 0.756 1.4e-89
TAIR|locus:2051874247 AT2G44120 [Arabidopsis thalian 0.946 0.931 0.752 2.2e-89
TAIR|locus:2086809244 AT3G13580 [Arabidopsis thalian 0.946 0.942 0.739 2.2e-89
UNIPROTKB|Q58DT1248 RPL7 "60S ribosomal protein L7 0.831 0.814 0.658 4.9e-69
UNIPROTKB|A8MUD9208 RPL7 "60S ribosomal protein L7 0.831 0.971 0.658 4.9e-69
UNIPROTKB|P18124248 RPL7 "60S ribosomal protein L7 0.831 0.814 0.658 4.9e-69
MGI|MGI:98073270 Rpl7 "ribosomal protein L7" [M 0.831 0.748 0.663 4.9e-69
UNIPROTKB|F1Q0Z2248 RPL7 "Uncharacterized protein" 0.831 0.814 0.658 6.3e-69
ZFIN|ZDB-GENE-030131-8654246 rpl7 "ribosomal protein L7" [D 0.946 0.934 0.586 6.3e-69
RGD|735169260 Rpl7 "ribosomal protein L7" [R 0.831 0.776 0.658 8e-69
TAIR|locus:2038741 AT2G01250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
 Identities = 174/230 (75%), Positives = 189/230 (82%)

Query:    14 LKKKKRXXXXXXXXXXXXXXXXXXXXXTRKLIYNRTKQYAKEYDEEQKELIRLKREAKLK 73
             LKK+KR                      RKLI+ R +QY+KEY E++KELI LKREAKLK
Sbjct:    13 LKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKREAKLK 72

Query:    74 GGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEP 133
             GGFYV+PEAKLLFIIRIRGINA+DPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEP
Sbjct:    73 GGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEP 132

Query:   134 YVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVG 193
             YVTYG+PNLKSV+ELIYKRGYGKLN QRIALTDNSI+EQALG+HGIIC EDLIHEILTVG
Sbjct:   133 YVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIHEILTVG 192

Query:   194 PHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRMN 243
             PHFKEANNFLWPF            RNHYVEGGDAGNRE++INELIRRMN
Sbjct:   193 PHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELIRRMN 242
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005840 "ribosome" evidence=IEA
GO:0006412 "translation" evidence=IEA;ISS
GO:0015934 "large ribosomal subunit" evidence=ISS
GO:0009507 "chloroplast" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0005618 "cell wall" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
TAIR|locus:2051874 AT2G44120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086809 AT3G13580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q58DT1 RPL7 "60S ribosomal protein L7" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|A8MUD9 RPL7 "60S ribosomal protein L7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P18124 RPL7 "60S ribosomal protein L7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:98073 Rpl7 "ribosomal protein L7" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q0Z2 RPL7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-8654 rpl7 "ribosomal protein L7" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|735169 Rpl7 "ribosomal protein L7" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q4R506RL7_MACFANo assigned EC number0.63130.97110.9554N/Ano
Q9LHP1RL74_ARATHNo assigned EC number0.85241.00.9959yesno
P05737RL7A_YEASTNo assigned EC number0.51230.98760.9836yesno
Q8SS93RL7_ENCCUNo assigned EC number0.31120.97110.9874yesno
Q5R9R4RL7_PONABNo assigned EC number0.63130.97110.9554yesno
A0CEY2RL71_PARTENo assigned EC number0.52740.95060.9314N/Ano
Q6C603RL7_YARLINo assigned EC number0.58990.97530.948yesno
P05426RL7_RATNo assigned EC number0.63400.96700.9038yesno
P60039RL73_ARATHNo assigned EC number0.86000.99581.0nono
A0BD73RL72_PARTENo assigned EC number0.52740.95060.9314N/Ano
Q6FSN6RL7_CANGANo assigned EC number0.51620.97110.9672yesno
O60143RL7C_SCHPONo assigned EC number0.56540.97110.9402yesno
Q12213RL7B_YEASTNo assigned EC number0.51460.97530.9713yesno
P11874RL7_DICDINo assigned EC number0.54040.96700.9552yesno
P60040RL72_ARATHNo assigned EC number0.87440.98350.9876nono
Q58DT1RL7_BOVINNo assigned EC number0.63550.97110.9516yesno
P0DJ13RL7_TETTHNo assigned EC number0.52560.96290.9790N/Ano
Q755A7RL7_ASHGONo assigned EC number0.54130.98760.9876yesno
P18124RL7_HUMANNo assigned EC number0.63130.97110.9516yesno
P14148RL7_MOUSENo assigned EC number0.63820.96700.8703yesno
P32100RL7_DROMENo assigned EC number0.57800.95470.9206yesno
Q7SBD5RL7_NEUCRNo assigned EC number0.61340.97530.9556N/Ano
Q5ZJ56RL7_CHICKNo assigned EC number0.63440.95470.9430yesno
Q6BTA4RL7_DEBHANo assigned EC number0.51250.98350.9917yesno
O01802RL7_CAEELNo assigned EC number0.56410.96290.9590yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query243
TIGR01310235 TIGR01310, L7, 60S ribosomal protein L7, eukaryoti 1e-108
cd01657159 cd01657, Ribosomal_L7_archeal_euk, Ribosomal prote 3e-88
PRK06049154 PRK06049, rpl30p, 50S ribosomal protein L30P; Revi 1e-22
TIGR01309152 TIGR01309, L30P_arch, 50S ribosomal protein L30P, 3e-20
pfam0807971 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-termin 2e-18
cd0035553 cd00355, Ribosomal_L30_like, Ribosomal protein L30 4e-17
pfam0032752 pfam00327, Ribosomal_L30, Ribosomal protein L30p/L 1e-15
COG184155 COG1841, RpmD, Ribosomal protein L30/L7E [Translat 2e-13
>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic Back     alignment and domain information 
 Score =  311 bits (799), Expect = e-108
 Identities = 144/235 (61%), Positives = 185/235 (78%), Gaps = 2/235 (0%)

Query: 11  ESVLKKKKREEEWALAKKQELEAAKKKKAETRKLIYNRTKQYAKEYDEEQKELIRLKREA 70
           E +LKK+K  +E A+   ++ +A KK   + RK+ + R + + KEY + ++E+IRLKR A
Sbjct: 1   ELLLKKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLA 60

Query: 71  KLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHR 130
           K  G FYV  E KL+F+IRI+GIN + PK +K+L+LLRL+Q+ NGVF+KV KATL ML  
Sbjct: 61  KKPGKFYVPAEHKLVFVIRIKGINGIPPKPRKVLRLLRLKQVNNGVFVKVTKATLEMLRI 120

Query: 131 VEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEIL 190
           VEPYV YGYPNLKSVRELIYKRG+ K+N QR+ LTDN+IIEQ LG++GIIC+EDLIHEI 
Sbjct: 121 VEPYVAYGYPNLKSVRELIYKRGFAKINGQRVPLTDNTIIEQHLGKYGIICIEDLIHEIY 180

Query: 191 TVGPHFKEANNFLWPFKLKAPLGG--LKKKRNHYVEGGDAGNREDYINELIRRMN 243
           TVGPHFKE NNFLWPFKL +P+ G   +KK  H++EGGD GNRED+INELI++MN
Sbjct: 181 TVGPHFKEVNNFLWPFKLSSPVKGWGKRKKVKHFIEGGDFGNREDFINELIKKMN 235

This model describes the eukaryotic 60S (cytosolic) ribosomal protein L7 and paralogs that may or may not also be L7. Human, Drosophila, and Arabidopsis all have both a typical L7 and an L7-related paralog. This family is designated subfamily rather than equivalog to reflect these uncharacterized paralogs. Members of this family average ~ 250 residues in length, somewhat longer than the archaeal L30P/L7E homolog (~ 155 residues) and much longer than the related bacterial/organellar form (~ 60 residues). Length = 235
>gnl|CDD|100099 cd01657, Ribosomal_L7_archeal_euk, Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds domain II of the 23S rRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome Back     alignment and domain information
>gnl|CDD|235683 PRK06049, rpl30p, 50S ribosomal protein L30P; Reviewed Back     alignment and domain information
>gnl|CDD|130376 TIGR01309, L30P_arch, 50S ribosomal protein L30P, archaeal Back     alignment and domain information
>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain Back     alignment and domain information
>gnl|CDD|100098 cd00355, Ribosomal_L30_like, Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa Back     alignment and domain information
>gnl|CDD|201157 pfam00327, Ribosomal_L30, Ribosomal protein L30p/L7e Back     alignment and domain information
>gnl|CDD|224754 COG1841, RpmD, Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 243
TIGR01310235 L7 60S ribosomal protein L7, eukaryotic. Members o 100.0
KOG3184235 consensus 60S ribosomal protein L7 [Translation, r 100.0
cd01657159 Ribosomal_L7_archeal_euk Ribosomal protein L7, whi 100.0
PRK06049154 rpl30p 50S ribosomal protein L30P; Reviewed 100.0
TIGR01309152 L30P_arch 50S ribosomal protein L30P, archaeal. Th 100.0
COG184155 RpmD Ribosomal protein L30/L7E [Translation, ribos 99.8
cd0035553 Ribosomal_L30_like Ribosomal protein L30, which is 99.76
PF0807971 Ribosomal_L30_N: Ribosomal L30 N-terminal domain; 99.72
PF0032752 Ribosomal_L30: Ribosomal protein L30p/L7e; InterPr 99.71
PRK0561159 rpmD 50S ribosomal protein L30; Reviewed 99.7
TIGR0130855 rpmD_bact ribosomal protein L30, bacterial/organel 99.66
cd0165854 Ribosomal_L30 Ribosomal protein L30, which is foun 99.63
KOG4799182 consensus Mitochondrial ribosomal protein L30 [Tra 97.22
>TIGR01310 L7 60S ribosomal protein L7, eukaryotic Back     alignment and domain information 
Probab=100.00  E-value=5.7e-85  Score=575.58  Aligned_cols=233  Identities=62%  Similarity=1.038  Sum_probs=228.6

Q ss_pred             hHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCeeEEEEee
Q 026136           11 ESVLKKKKREEEWALAKKQELEAAKKKKAETRKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRI   90 (243)
Q Consensus        11 E~llKKrk~~~~~~~~~~~~~~~~k~~~k~~rk~~~krae~~vkeyr~~erd~~r~kr~ak~~~~~~~~~e~kl~~Viri   90 (243)
                      |++|||||++++++..+++++.+.++.++++++.+|+|||+|+++|+++++|.+|++|+++++|++|+|++|+++|||||
T Consensus         1 e~llkkrk~~~~~~~~~~~~~~~~k~~~~~~k~~~fkr~e~~~~~y~~~e~d~~r~~r~~k~~~~~~~~~e~kl~fVIRi   80 (235)
T TIGR01310         1 ELLLKKRKARQELAVVRAKQAKAKKKRNKKKKKHYFKRAESFVHEYRKAERERIRLKRLAKKPGKFYVPAEHKLLFVIRI   80 (235)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCeEEEEEEe
Confidence            78999999999999999999888888888999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCHHHHHHHHHhCCCcccceEEEeCCHhhHHHHhhccCeEEEcCCCHHHHHHHHHhhcccccCCccccCCCchHH
Q 026136           91 RGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSII  170 (243)
Q Consensus        91 rg~~~~~~~~~k~L~~L~L~ki~~~v~v~~~~~~~gmL~~V~~~V~~G~p~~~tv~~Li~KRG~~k~~~~~~~ltdn~~i  170 (243)
                      ||++++||++++||++|||+++|+|||+++||++.+||++|+|||||||||++||++||||||+++++|++||||||+||
T Consensus        81 rG~~~v~p~v~k~L~lLRL~~in~~Vfvk~~~~~~~ML~~VepYVt~G~p~l~tvr~Li~KRG~~k~~~~~v~Ltdn~ii  160 (235)
T TIGR01310        81 KGINGIPPKPRKVLRLLRLKQVHNGVFVKVNKATLQMLRIVEPYVAYGYPNLKSVRELIYKRGFAKINGQRVPLTDNTII  160 (235)
T ss_pred             CCCCCCCHHHHHHHHHhCCCccceEEEEECCHHHHHHHHhcCCeEEEecCCHHHHHHHHHHhCceeeCCCeeeCChhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhccCCcccHHHHHHHHHhcCCChhhhhcCCCCcccCCCCccccc--ccccccccCCCCCChhHHHHHHHhhC
Q 026136          171 EQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLKK--KRNHYVEGGDAGNREDYINELIRRMN  243 (243)
Q Consensus       171 ee~lg~~gi~ciEdlv~ei~~~g~~f~~v~~fl~pF~L~~P~~G~~~--~k~~~~~gG~~G~r~~~In~li~rm~  243 (243)
                      |++||++||+|+|||||||+|+|+||+++++|||||+||||+|||++  +++||.+||++||||++||+||++|+
T Consensus       161 E~~lg~~gi~ciEDliheI~t~g~~fk~i~~~L~PFrL~~Pr~G~~~~~~~~~~~egG~~G~r~~~IN~Li~rM~  235 (235)
T TIGR01310       161 EQHLGKYGIICIEDLIHEIYTVGPHFKEVNNFLWPFKLSSPVKGFGKRKKVKHFKEGGDFGNREDAINELIRKMN  235 (235)
T ss_pred             HHhhccCCcccHHHHHHHHHhCCCCHHHHhcCccCccCCCCcccccccCcccCcccCCCCCccHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999974  78999999999999999999999997

Members of this family average ~ 250 residues in length, somewhat longer than the archaeal L30P/L7E homolog (~ 155 residues) and much longer than the related bacterial/organellar form (~ 60 residues).
>KOG3184 consensus 60S ribosomal protein L7 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd01657 Ribosomal_L7_archeal_euk Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds domain II of the 23S rRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome Back     alignment and domain information
>PRK06049 rpl30p 50S ribosomal protein L30P; Reviewed Back     alignment and domain information
>TIGR01309 L30P_arch 50S ribosomal protein L30P, archaeal Back     alignment and domain information
>COG1841 RpmD Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00355 Ribosomal_L30_like Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa Back     alignment and domain information
>PF08079 Ribosomal_L30_N: Ribosomal L30 N-terminal domain; InterPro: IPR012988 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF00327 Ribosomal_L30: Ribosomal protein L30p/L7e; InterPro: IPR016082 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK05611 rpmD 50S ribosomal protein L30; Reviewed Back     alignment and domain information
>TIGR01308 rpmD_bact ribosomal protein L30, bacterial/organelle Back     alignment and domain information
>cd01658 Ribosomal_L30 Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa Back     alignment and domain information
>KOG4799 consensus Mitochondrial ribosomal protein L30 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query243
3izr_e244 Localization Of The Large Subunit Ribosomal Protein 2e-90
2zkr_w270 Structure Of A Mammalian Ribosomal 60s Subunit With 2e-75
3izs_e244 Localization Of The Large Subunit Ribosomal Protein 3e-63
4a17_V239 T.Thermophila 60s Ribosomal Subunit In Complex With 5e-63
1s1i_F162 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 4e-53
3jyw_F213 Structure Of The 60s Proteins For Eukaryotic Riboso 5e-53
3zf7_w257 High-resolution Cryo-electron Microscopy Structure 1e-50
3j21_Y155 Promiscuous Behavior Of Proteins In Archaeal Riboso 4e-07
>pdb|3IZR|EE Chain e, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 244 Back     alignment and structure 
Iteration: 1

 Score =  328 bits (841), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 154/201 (76%), Positives = 176/201 (87%)
Query: 43  KLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKK 102
           K+IY R +QYA EY+ + KEL++LKREA++KGGFYV+PEAK LF++RIRGINA+ PKTKK
Sbjct: 44  KVIYARAEQYAGEYEAQDKELVQLKREARMKGGFYVSPEAKPLFVVRIRGINAMHPKTKK 103
Query: 103 ILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRI 162
           ILQLLRLRQIFNGVFLKVNKAT+NML RVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRI
Sbjct: 104 ILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRI 163
Query: 163 ALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHY 222
            L +N +IE+ LG+H IIC+EDL+HEILTVGPHFKEANNFLWPF            RNHY
Sbjct: 164 PLANNKVIEEGLGKHNIICIEDLVHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHY 223
Query: 223 VEGGDAGNREDYINELIRRMN 243
           VEGGDAGNRE+YIN+L+RRMN
Sbjct: 224 VEGGDAGNRENYINQLVRRMN 244
>pdb|2ZKR|WW Chain w, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 270 Back     alignment and structure
>pdb|3IZS|EE Chain e, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 244 Back     alignment and structure
>pdb|4A17|V Chain V, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 239 Back     alignment and structure
>pdb|1S1I|F Chain F, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 162 Back     alignment and structure
>pdb|3JYW|F Chain F, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 213 Back     alignment and structure
>pdb|3ZF7|WW Chain w, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 257 Back     alignment and structure
>pdb|3J21|Y Chain Y, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 155 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query243
3izc_e244 60S ribosomal protein RPL7 (L30P); eukaryotic ribo 3e-80
4a17_V239 RPL7, 60S ribosomal protein L7; eukaryotic ribosom 6e-80
3iz5_e244 60S ribosomal protein L7 (L30P); eukaryotic riboso 3e-79
2zkr_w270 60S ribosomal protein L7; protein-RNA complex, 60S 3e-76
3jyw_F213 60S ribosomal protein L7(A); eukaryotic ribosome, 3e-76
1vq8_W154 50S ribosomal protein L30P; ribosome 50S, protein- 3e-59
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 9e-06
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_V 4a1c_V 4a1e_V Length = 239 Back     alignment and structure
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 270 Back     alignment and structure
>3jyw_F 60S ribosomal protein L7(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_F Length = 213 Back     alignment and structure
>1vq8_W 50S ribosomal protein L30P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.59.1.1 PDB: 1jj2_V 1k73_X* 1k8a_X* 1k9m_X* 1kc8_X* 1kd1_X* 1kqs_V* 1m1k_X* 1m90_X* 1n8r_X* 1nji_X* 1q7y_X* 1q81_X* 1q82_X* 1q86_X* 1qvf_V 1qvg_V 1s72_W* 1vq4_W* 1vq5_W* ... Length = 154 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query243
4a17_V239 RPL7, 60S ribosomal protein L7; eukaryotic ribosom 100.0
3iz5_e244 60S ribosomal protein L7 (L30P); eukaryotic riboso 100.0
3izc_e244 60S ribosomal protein RPL7 (L30P); eukaryotic ribo 100.0
2zkr_w270 60S ribosomal protein L7; protein-RNA complex, 60S 100.0
1vq8_W154 50S ribosomal protein L30P; ribosome 50S, protein- 100.0
3j21_Y155 50S ribosomal protein L30P; archaea, archaeal, KIN 100.0
3jyw_F213 60S ribosomal protein L7(A); eukaryotic ribosome, 100.0
1bxy_A60 Protein (ribosomal protein L30); X-RAY crystallogr 99.73
2zjr_W55 50S ribosomal protein L30; ribosome, large ribosom 99.69
3r8s_Z58 50S ribosomal protein L30; protein biosynthesis, R 99.68
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_V 4a1c_V 4a1e_V Back     alignment and structure
Probab=100.00  E-value=7.3e-89  Score=601.08  Aligned_cols=236  Identities=52%  Similarity=0.939  Sum_probs=231.8

Q ss_pred             CCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCeeEEE
Q 026136            8 VVPESVLKKKKREEEWALAKKQELEAAKKKKAETRKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFI   87 (243)
Q Consensus         8 ~vpE~llKKrk~~~~~~~~~~~~~~~~k~~~k~~rk~~~krae~~vkeyr~~erd~~r~kr~ak~~~~~~~~~e~kl~~V   87 (243)
                      +|||++|||||+++++++.+++++.+.++.++++++.+|+|||+|++||+++++|++||+|+|+++|+||+|+||+|+||
T Consensus         4 ~vpe~~lKkrk~~~~~~~~~~~~~~~~k~~~~~~r~~~~~rae~y~~ey~~~~r~~ir~~r~a~~~~~~~~~~e~kl~fV   83 (239)
T 4a17_V            4 FVPENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTGAFYVPAEAKVAFA   83 (239)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCCCCEEEE
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceEEEE
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecccCCCCHHHHHHHHHhCCCcccceEEEeCCHhhHHHHhhccCeEEEcCCCHHHHHHHHHhhcccccCCccccCCCc
Q 026136           88 IRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDN  167 (243)
Q Consensus        88 irirg~~~~~~~~~k~L~~L~L~ki~~~v~v~~~~~~~gmL~~V~~~V~~G~p~~~tv~~Li~KRG~~k~~~~~~~ltdn  167 (243)
                      |||||++|++|++++||++|||+++|++||+++||+++|||++|+|||+|||||++||++||||||+++++++++|||||
T Consensus        84 irIRg~ig~~~~~rktL~~LgL~ki~~~Vfvk~npa~~gMLr~V~pyV~~G~pnlksv~eLi~KRG~~k~~~~~i~Ltdn  163 (239)
T 4a17_V           84 IRIRGVNQLHPDVKRVLRLFRLRQLHNGAFFRVNKASLNMIKRVLPFITFGYPTRNTISKLIYKRGFAKVNGQRIPLTDN  163 (239)
T ss_dssp             EECSCSSSCCHHHHHHHHHTTCCBTTEEEEEECCHHHHHTTGGGGGGEEEECCCHHHHHHHHHHSCEEEETTEEEECCCS
T ss_pred             EEecccCCCCHHHHHHHHHcCCCccCCeEEEeCCHHHHHHHHHhhhceeeecCCHHHHHHHHHhhCccccCCceecCChh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhhccCCcccHHHHHHHHHhcCCChhhhhcCCCCcccCCCCcccccccccccccCCCCCChhHHHHHHHhhC
Q 026136          168 SIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRRMN  243 (243)
Q Consensus       168 ~~iee~lg~~gi~ciEdlv~ei~~~g~~f~~v~~fl~pF~L~~P~~G~~~~k~~~~~gG~~G~r~~~In~li~rm~  243 (243)
                      ++||++||++||+|||||||||||+|++|+++++|||||+||||+|||++++.||.+||++|||||.||+||++|+
T Consensus       164 ~~ie~~lGk~giiciEDLiheI~t~g~~fk~~~~fl~pFkL~~PrgG~k~~~~~f~egG~~G~r~~~IN~Li~rM~  239 (239)
T 4a17_V          164 TIVEKSLGKFGITCVEDLIHEITTVGPHFKEANNFLWPFKLDTPRGGFRNKRHAYHQGGDWGNREVYINDLVKAML  239 (239)
T ss_dssp             HHHHHHHGGGTCCSHHHHHHHHHHTCSCCHHHHHHBCCEECCCCSSCCSCTTSBGGGTCCBEECTTTHHHHHHHHC
T ss_pred             HHHHHhCCcCCcccHHHHHHHHHhCCcCHHHhhccCCCeECCCCccccccCCcccccCCCccccHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999888999999999999999999999997
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>1vq8_W 50S ribosomal protein L30P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.59.1.1 PDB: 1jj2_V 1k73_X* 1k8a_X* 1k9m_X* 1kc8_X* 1kd1_X* 1kqs_V* 1m1k_X* 1m90_X* 1n8r_X* 1nji_X* 1q7y_X* 1q81_X* 1q82_X* 1q86_X* 1qvf_V 1qvg_V 1s72_W* 1vq4_W* 1vq5_W* ... Back     alignment and structure
>3j21_Y 50S ribosomal protein L30P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3jyw_F 60S ribosomal protein L7(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_F Back     alignment and structure
>1bxy_A Protein (ribosomal protein L30); X-RAY crystallography, conformational changes, ribosome; 1.90A {Thermus thermophilus} SCOP: d.59.1.1 PDB: 1giy_X 1ml5_x* 1vsa_X 1vsp_X 1yl3_X 2b66_3 2b9n_3 2b9p_3 2hgj_2 2hgq_2 2hgu_2 2j01_3 2j03_3 2jl6_3 2jl8_3 2v47_3 2v49_3 2wdi_3 2wdj_3 2wdl_3 ... Back     alignment and structure
>2zjr_W 50S ribosomal protein L30; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.59.1.1 PDB: 1nwx_X* 1nwy_X* 1pnu_X 1pny_X 1sm1_X* 1vor_Z 1vou_Z 1vow_Z 1voy_Z 1vp0_Z 1xbp_X* 2zjp_W* 2zjq_W 1nkw_X 3cf5_W* 3dll_W* 3pio_W* 3pip_W* Back     alignment and structure
>3r8s_Z 50S ribosomal protein L30; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_X 1p86_X 2awb_Y 2aw4_Y 2i2v_Z 2j28_Y 2i2t_Z* 2qao_Y* 2qba_Y* 2qbc_Y* 2qbe_Y 2qbg_Y 2qbi_Y* 2qbk_Y* 2qov_Y 2qox_Y 2qoz_Y* 2qp1_Y* 2rdo_Y 2vhm_Y ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 243
d1vqow1154 d.59.1.1 (W:1-154) Archaeal L30 (L30a) {Archaeon H 2e-58
d2gycx156 d.59.1.1 (X:3-58) Prokaryotic ribosomal protein L3 6e-04
d1bxya_60 d.59.1.1 (A:) Prokaryotic ribosomal protein L30 {T 0.001
>d1vqow1 d.59.1.1 (W:1-154) Archaeal L30 (L30a) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 154 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L30p/L7e
superfamily: Ribosomal protein L30p/L7e
family: Ribosomal protein L30p/L7e
domain: Archaeal L30 (L30a)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  180 bits (458), Expect = 2e-58
 Identities = 26/160 (16%), Positives = 60/160 (37%), Gaps = 8/160 (5%)

Query: 84  LLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLK 143
           +  ++++RG   +    +  L++L +  + +   +    A   M+ +V  +V +G P+ +
Sbjct: 1   MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQE 60

Query: 144 SVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFL 203
           ++  ++  R         +   D    E          +  L   +L+            
Sbjct: 61  TLETVLATRAEPLEGDADV--DD----EWVAEHTDYDDISGLAFALLS-EETTLREQGLS 113

Query: 204 WPFKLKAPLGGLKKKRNHYVEGGDAGN-REDYINELIRRM 242
              +L  P GG    ++   EGG  G    + I++L+  M
Sbjct: 114 PTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAM 153
>d2gycx1 d.59.1.1 (X:3-58) Prokaryotic ribosomal protein L30 {Escherichia coli [TaxId: 562]} Length = 56 Back     information, alignment and structure
>d1bxya_ d.59.1.1 (A:) Prokaryotic ribosomal protein L30 {Thermus thermophilus [TaxId: 274]} Length = 60 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query243
d1vqow1154 Archaeal L30 (L30a) {Archaeon Haloarcula marismort 100.0
d2gycx156 Prokaryotic ribosomal protein L30 {Escherichia col 99.65
d1bxya_60 Prokaryotic ribosomal protein L30 {Thermus thermop 99.63
d2zjrw155 Prokaryotic ribosomal protein L30 {Deinococcus rad 99.53
>d1vqow1 d.59.1.1 (W:1-154) Archaeal L30 (L30a) {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L30p/L7e
superfamily: Ribosomal protein L30p/L7e
family: Ribosomal protein L30p/L7e
domain: Archaeal L30 (L30a)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=5.1e-59  Score=385.68  Aligned_cols=153  Identities=17%  Similarity=0.330  Sum_probs=144.8

Q ss_pred             eEEEEeecccCCCCHHHHHHHHHhCCCcccceEEEeCCHhhHHHHhhccCeEEEcCCCHHHHHHHHHhhcccccCCcccc
Q 026136           84 LLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIA  163 (243)
Q Consensus        84 l~~Virirg~~~~~~~~~k~L~~L~L~ki~~~v~v~~~~~~~gmL~~V~~~V~~G~p~~~tv~~Li~KRG~~k~~~~~~~  163 (243)
                      +++||||||.+|+||++++||++|||+++|+|||+++||+++|||++|+|||||||||++||++||||||+++.++.  |
T Consensus         1 m~aViRIRg~ig~~~~~r~tL~~LrL~k~~~~V~~~~tp~~~gML~kVk~yVt~G~~~~~tv~~Li~kRG~~~~g~~--~   78 (154)
T d1vqow1           1 MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDA--D   78 (154)
T ss_dssp             CEEEEECSCSTTSCHHHHHHHHHTTCCSTTEEEEECCCHHHHHHHHHSTTSEEEECCCHHHHHHHHHHHCCBSSSCC--C
T ss_pred             CeeEEEecCCCCCCHHHHHHHHHcCCCcCCCEEEecCCHHHHHHHHhhccceeEecCCHHHHHHHHHHhcccccCCC--c
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999888775  8


Q ss_pred             CCCchHHHhhhccCCcccHHHHHHHHHhcCCChhhhhcCCCCcccCCCCcccccccccccccCCCC-CChhHHHHHHHhh
Q 026136          164 LTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAG-NREDYINELIRRM  242 (243)
Q Consensus       164 ltdn~~iee~lg~~gi~ciEdlv~ei~~~g~~f~~v~~fl~pF~L~~P~~G~~~~k~~~~~gG~~G-~r~~~In~li~rm  242 (243)
                      ||||+++|    ++||+|+|||||+|++ |++|.++++|+|||+||||++||++++++|.+||++| ||||+||+||++|
T Consensus        79 lt~e~i~~----~~g~~~iedl~~~i~~-g~~~~~~~~~~~pFrL~pP~~g~~~~k~~~~~gG~~Gnyrge~IN~Li~rM  153 (154)
T d1vqow1          79 VDDEWVAE----HTDYDDISGLAFALLS-EETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAM  153 (154)
T ss_dssp             CCHHHHHH----HSSSSSHHHHHHHHHT-TSCCTTTTTBCSEEECCCCTTCCSCSSSBGGGTSSBEECCHHHHHHHHHHT
T ss_pred             CCHhHhcc----ccCcccHHHHHHHHHc-CCceeeccCCcCCeeCCCcccchhhcccccccCCccCCccHHHHHHHHHHc
Confidence            99998866    3589999999999998 6777788999999999999999999999999999999 6999999999999


Q ss_pred             C
Q 026136          243 N  243 (243)
Q Consensus       243 ~  243 (243)
                      -
T Consensus       154 ~  154 (154)
T d1vqow1         154 R  154 (154)
T ss_dssp             C
T ss_pred             C
Confidence            4
>d2gycx1 d.59.1.1 (X:3-58) Prokaryotic ribosomal protein L30 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bxya_ d.59.1.1 (A:) Prokaryotic ribosomal protein L30 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2zjrw1 d.59.1.1 (W:1-55) Prokaryotic ribosomal protein L30 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure