Citrus Sinensis ID: 026140

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEEEcccccccEEEEEEEccccccEEEEEEEEEEcccccHHHHccccccccccEEccccccEEEEEEcccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccEEEEccEEEEccccccccEEEEEccccccccHHHEEccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEcccccHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEEEEEcccccccEEEEEEEccccccEEEEEEEEEEEcHHHHHHHHcccccccccEccccEEEEEEEEEcccccccccccEEEEcccccccccHHHHccccccccccHHHHHccccccccccEEEcccEEEEccccccccEcEEEEEHHHEEEccccccHHHHHHHHcHHHHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEcccHHHHHHcc
Coil and Loop (DISEMBL)
mdiekpsnktagkpiqcraaiatapgeplvidevivdppnsheVRVRIICTSLChsdvtfwkmkdfpavfprilgHEAIGVVEsvgenvdgvvegdvviphfladctecvgcrskkgnlcsafpfkispwmprdqtsrfkdlrgetihhfvsvssfseytvLDIAHvvkvdptvppnracllscgvstgvgAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE
Flexible Loop (DISEMBL)
mdiekpsnktagkpiqCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSafpfkispwmprdQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE
Low Complexity Region (SEG)
MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIgvvesvgenvdgvvegdvvIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE
Disordered region (IsUnstruct)
***************QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK*****
Disordered Region (DISOPRED)
***************QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE*G*
Disordered Region (DISEMBL)
************KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE
Disordered Region (DISPRO)
***********GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	243	2.2.26 [Sep-21-2011]
Q9FH04	390	Alcohol dehydrogenase-lik	yes	no	0.971	0.605	0.717	1e-98
Q9SK86	388	Alcohol dehydrogenase-lik	no	no	0.954	0.597	0.615	3e-79
Q9SK87	386	Alcohol dehydrogenase-lik	no	no	0.962	0.606	0.622	4e-79
Q0V7W6	389	Alcohol dehydrogenase-lik	no	no	0.954	0.596	0.611	9e-78
P48977	380	Alcohol dehydrogenase OS=	N/A	no	0.954	0.610	0.512	9e-64
Q96533	379	Alcohol dehydrogenase cla	no	no	0.934	0.598	0.531	1e-62
P13603	380	Alcohol dehydrogenase 1 O	N/A	no	0.967	0.618	0.497	4e-62
Q8VZ49	380	Alcohol dehydrogenase-lik	no	no	0.946	0.605	0.514	4e-62
A1L4Y2	394	Alcohol dehydrogenase-lik	no	no	0.967	0.596	0.518	6e-62
P28032	380	Alcohol dehydrogenase 2 O	N/A	no	0.946	0.605	0.508	9e-62

>sp|Q9FH04|ADHL7_ARATH Alcohol dehydrogenase-like 7 OS=Arabidopsis thaliana GN=At5g42250 PE=2 SV=1

 Score =  359 bits (921), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 170/237 (71%), Positives = 204/237 (86%), Gaps = 1/237 (0%)

Query: 8   NKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP 67
           NK++ KPI+C+AA++   GEPLV++E++V PP   EVR+RIICT+LCHSDVTFWK++  P
Sbjct: 10  NKSSHKPIRCKAAVSRKAGEPLVMEEIMVAPPQPFEVRIRIICTALCHSDVTFWKLQVPP 69

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
           A FPRILGHEAIGVVESVGENV  VVEGD V+P F+ DC +CV C+S K NLCS FPFK+
Sbjct: 70  ACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGDCVDCKSHKSNLCSKFPFKV 129

Query: 128 SPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
           SPWMPR D +SRF DL GET+ HF++VSSFSEYTVLD+A+VVK+D ++PP+RACLLSCGV
Sbjct: 130 SPWMPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPPSRACLLSCGV 189

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
           STGVGAAW TA VE GSTVVIFGLGSIGLAVAEGARLCGA+RIIGVD+   KF++G+
Sbjct: 190 STGVGAAWETAKVEKGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPTKFQVGQ 246

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1

>sp|Q9SK86|ADHL1_ARATH Alcohol dehydrogenase-like 1 OS=Arabidopsis thaliana GN=At1g22430 PE=2 SV=1

 Score =  295 bits (754), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 144/234 (61%), Positives = 180/234 (76%), Gaps = 2/234 (0%)

Query: 12  GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVF 70
           GKPI C+AAI    GE LVI+++ VDPP ++EVR++I+CTSLCH+D+TFWK+   P + F
Sbjct: 11  GKPITCKAAICRKAGEALVIEDIHVDPPQAYEVRIKILCTSLCHTDLTFWKLSFGPISRF 70

Query: 71  PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK-ISP 129
           PRILGHEA+GVVES+GENVDG  +GDVV+P F   C EC  C+S K N C  +    IS 
Sbjct: 71  PRILGHEAVGVVESIGENVDGFKQGDVVLPVFHPYCEECKDCKSSKTNWCDRYAEDFISN 130

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                  SRFKD  GE IHHF+ VSSFSEYTV+DIAH+VK+ P +P ++A LLSCGVSTG
Sbjct: 131 TRRYGMASRFKDSSGEVIHHFLFVSSFSEYTVVDIAHLVKISPEIPVDKAALLSCGVSTG 190

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
           +GAAW+ ANVE GST+ IFGLG++GLAVAEGARL GA +IIG+D  S+KFE+G+
Sbjct: 191 IGAAWKVANVEEGSTIAIFGLGAVGLAVAEGARLRGAAKIIGIDTNSDKFELGK 244

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9SK87|ADHL2_ARATH Alcohol dehydrogenase-like 2 OS=Arabidopsis thaliana GN=At1g22440 PE=2 SV=1

 Score =  294 bits (752), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 147/236 (62%), Positives = 181/236 (76%), Gaps = 2/236 (0%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-A 68
           T GKPI+C+AAI    GEPLVI+E+ VDPP ++EVR++I+CTSLCH+DVTFWK+   P A
Sbjct: 7   TEGKPIRCKAAILRKAGEPLVIEEIQVDPPQAYEVRIKILCTSLCHTDVTFWKLDSGPLA 66

Query: 69  VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK-I 127
            FPRILGHEA+GVVES+GE VDG  +GDVV+P F   C EC  C S K N C+ +    +
Sbjct: 67  RFPRILGHEAVGVVESIGEKVDGFKQGDVVLPVFHPQCEECKECISPKSNWCTKYTNDYL 126

Query: 128 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187
           S       TSRFKD RGE IHHF+ VSSF+EYTV+DIAH+VK+ P +P + A LLSC V+
Sbjct: 127 SNTRRYGMTSRFKDSRGEDIHHFIFVSSFTEYTVVDIAHLVKISPEIPVDIAALLSCSVA 186

Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
           TG+GAAW+ A+VE GSTVVIFGLG++GLAVAEG RL GA +IIGVD+   KFEIG+
Sbjct: 187 TGLGAAWKVADVEEGSTVVIFGLGAVGLAVAEGVRLRGAAKIIGVDLNPAKFEIGK 242

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q0V7W6|ADHL5_ARATH Alcohol dehydrogenase-like 5 OS=Arabidopsis thaliana GN=At4g22110 PE=2 SV=1

 Score =  290 bits (741), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 143/234 (61%), Positives = 183/234 (78%), Gaps = 2/234 (0%)

Query: 12  GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVF 70
           GKPI+C+AA++  PGE LVI+E+ VDPP ++EVR++IICTSLCH+DV+F K+   P A F
Sbjct: 12  GKPIRCKAAVSRKPGEALVIEEIHVDPPQAYEVRIKIICTSLCHTDVSFSKIDSGPLARF 71

Query: 71  PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK-ISP 129
           PRILGHEA+GV+ES+GE+V+G  +GDVV+P F   C EC  C+S K N C+ F    +S 
Sbjct: 72  PRILGHEAVGVIESIGEHVNGFQQGDVVLPVFHPHCEECRDCKSSKSNWCARFADDFLSN 131

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                 TSRFKD  GE I+HF+ VSSFSEYTV+DIAH+VK+ P +P ++A LLSCGVSTG
Sbjct: 132 TRRYGMTSRFKDSFGEDIYHFLFVSSFSEYTVVDIAHLVKISPDIPVDKAALLSCGVSTG 191

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
           +GAAW+ ANVE GSTV +FGLG++GLAV EGARL GA +IIGVD+  EKFE+G+
Sbjct: 192 IGAAWKVANVEKGSTVAVFGLGAVGLAVGEGARLRGAGKIIGVDLNPEKFELGK 245

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P48977|ADH_MALDO Alcohol dehydrogenase OS=Malus domestica GN=ADH PE=2 SV=1

 Score =  243 bits (620), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 120/234 (51%), Positives = 166/234 (70%), Gaps = 2/234 (0%)

Query: 8   NKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP 67
           + TAG+ I+CRAA+A   G+PLVI+EV V PP ++EVR++I+ TSLCH+DV FW+ K   
Sbjct: 2   SNTAGQVIRCRAAVAWEAGKPLVIEEVEVAPPQANEVRIKILFTSLCHTDVYFWEAKGQN 61

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
            +FPRI GHEA G+VESVGE V  +  GD V+P F  +C +C  C+S++ N+C       
Sbjct: 62  PLFPRIYGHEAGGIVESVGEGVTDLKAGDHVLPVFTGECKDCAHCKSEESNMCDLLRINT 121

Query: 128 SPW-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
               M  D  SRF  ++G+ I+HFV  S+FSEYTV+ +  + K++P+ P ++ CLLSCG+
Sbjct: 122 DRGVMLSDGKSRF-SIKGKPIYHFVGTSTFSEYTVVHVGCLAKINPSAPLDKVCLLSCGI 180

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
           STG+GA    A  + GSTV +FGLG++GLA AEGARL GA+RIIGVD+ S++FE
Sbjct: 181 STGLGATLNVAKPKKGSTVAVFGLGAVGLAAAEGARLSGASRIIGVDLHSDRFE 234

Malus domestica (taxid: 3750)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q96533|ADHX_ARATH Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2

 Score =  239 bits (609), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 125/235 (53%), Positives = 162/235 (68%), Gaps = 8/235 (3%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T G+ I C+AA+A  P +PLVI++V V PP + EVR++I+ T+LCH+D   W  KD   +
Sbjct: 3   TQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEGL 62

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC----SAFPF 125
           FP ILGHEA G+VESVGE V  V  GD VIP + A+C EC  C+S K NLC    SA   
Sbjct: 63  FPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGV 122

Query: 126 KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
            I   M  D+ SRF  + G+ I+HF+  S+FS+YTV+    V K+DPT P ++ CLL CG
Sbjct: 123 GI---MMNDRKSRF-SVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCG 178

Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
           V TG+GA W TA VE GS V IFGLG++GLAVAEGA+  GA+RIIG+D+ S+K+E
Sbjct: 179 VPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYE 233

Plays a central role in formaldehyde detoxification.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P13603|ADH1_TRIRP Alcohol dehydrogenase 1 OS=Trifolium repens GN=ADH1 PE=2 SV=1

 Score =  238 bits (606), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 118/237 (49%), Positives = 164/237 (69%), Gaps = 2/237 (0%)

Query: 8   NKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP 67
           + TAG+ I+CRAA+A   G+PLVI+EV V PP + EVR++I+ TSLCH+DV FW+ K   
Sbjct: 2   SNTAGQVIKCRAAVAWEAGKPLVIEEVEVAPPQAGEVRLKILFTSLCHTDVYFWEAKGQT 61

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
            +FPRI GHEA G+VESVGE V  +  GD  +P F  +C EC  C+S++ N+C+      
Sbjct: 62  PLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCNLLRINT 121

Query: 128 SPW-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
               M  D  SRF  ++G+ +HHFV  S+FSEYTV+    V K++P  P ++ C+LSCG+
Sbjct: 122 DRGVMINDNKSRF-SIKGQPVHHFVGTSTFSEYTVVHAGCVAKINPDAPLDKVCILSCGI 180

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
            TG+GA    A  + GS+V IFGLG++GLA AEGAR+ GA+RIIGVD++S +FE+ +
Sbjct: 181 CTGLGATVNVAKPKPGSSVAIFGLGAVGLAAAEGARMSGASRIIGVDLVSSRFELAK 237

Trifolium repens (taxid: 3899)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q8VZ49|ADHL4_ARATH Alcohol dehydrogenase-like 4 OS=Arabidopsis thaliana GN=At1g64710 PE=2 SV=1

 Score =  238 bits (606), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 124/241 (51%), Positives = 169/241 (70%), Gaps = 11/241 (4%)

Query: 9   KTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFP 67
           +T GK I C+AA+A   GEPLV+++V VDPP   EVR+RI+ TS+CH+D++ WK   +  
Sbjct: 2   ETQGKVITCKAAVAWGAGEPLVMEDVKVDPPQRLEVRIRILFTSICHTDLSAWKGENEAQ 61

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
             +PRILGHEA G+VESVGE V+ ++ GD V+P F  +C +C  C+    NLC  F  ++
Sbjct: 62  RAYPRILGHEAAGIVESVGEGVEEMMAGDHVLPIFTGECGDCRVCKRDGANLCERF--RV 119

Query: 128 SPW---MPRDQTSRF---KDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL 181
            P    M  D  +RF   KD   + I+HF++ S+FSEYTV+D A V+KVDP  P  +  L
Sbjct: 120 DPMKKVMVTDGKTRFFTSKD--NKPIYHFLNTSTFSEYTVIDSACVLKVDPLFPLEKISL 177

Query: 182 LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
           LSCGVSTGVGAAW  A+++  STV IFGLG++GLAVAEGAR  GA++IIG+D+  +KF++
Sbjct: 178 LSCGVSTGVGAAWNVADIQPASTVAIFGLGAVGLAVAEGARARGASKIIGIDINPDKFQL 237

Query: 242 G 242
           G
Sbjct: 238 G 238

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|A1L4Y2|ADHL3_ARATH Alcohol dehydrogenase-like 3 OS=Arabidopsis thaliana GN=At1g32780 PE=2 SV=1

 Score =  237 bits (604), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 127/245 (51%), Positives = 163/245 (66%), Gaps = 10/245 (4%)

Query: 9   KTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFP 67
           +T GK I C+AA+   P  PLVI E+ VDPP   EVRV+I+ +S+CH+D+  W    +  
Sbjct: 3   ETQGKVITCKAAVVWGPKVPLVIQEICVDPPQKMEVRVKILYSSICHTDLGCWNGTNEAE 62

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK- 126
             FPRILGHEA+G+VESVGE V  V EGD VIP F  +C EC  C+ ++ NLC  +    
Sbjct: 63  RAFPRILGHEAVGIVESVGEGVKDVKEGDYVIPTFNGECGECKVCKREESNLCERYHVDP 122

Query: 127 ISPWMPRDQTSRF-----KD---LRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR 178
           +   M  D  +RF     KD    + + I+HF++ S+F+EYTVLD A VVK+DP  P  +
Sbjct: 123 MKRVMVNDGGTRFSTTINKDGGSSQSQPIYHFLNTSTFTEYTVLDSACVVKIDPNSPLKQ 182

Query: 179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 238
             LLSCGVSTGVGAAW  ANV+ G +  +FGLGS+GLAVAEGAR  GA+RIIGVD  + K
Sbjct: 183 MSLLSCGVSTGVGAAWNIANVKEGKSTAVFGLGSVGLAVAEGARARGASRIIGVDANASK 242

Query: 239 FEIGE 243
           FE G+
Sbjct: 243 FEKGK 247

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P28032|ADH2_SOLLC Alcohol dehydrogenase 2 OS=Solanum lycopersicum GN=ADH2 PE=2 SV=2

 Score =  236 bits (603), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 118/232 (50%), Positives = 160/232 (68%), Gaps = 2/232 (0%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T G+ I+C+AA+A   G+PLV++EV V PP   EVR++I+ TSLCH+DV FW+ K    V
Sbjct: 4   TVGQVIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKGQNPV 63

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FPRILGHEA G+VESVGE V  +  GD V+P F  +C +C  C+S++ N+CS        
Sbjct: 64  FPRILGHEAAGIVESVGEGVTDLAPGDHVLPVFTGECKDCAHCKSEESNMCSLLRINTDR 123

Query: 130 W-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST 188
             M  D  SRF  + G  I+HFV  S+FSEYTV+ +  V K++P  P ++ C+LSCG+ST
Sbjct: 124 GVMLNDGKSRF-SINGNPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSCGIST 182

Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
           G+GA+   A    GS+V IFGLG++GLA AEGAR+ GA+RIIGVD+ + +FE
Sbjct: 183 GLGASLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAGASRIIGVDLNASRFE 234

Solanum lycopersicum (taxid: 4081)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
255539138	386	alcohol dehydrogenase, putative [Ricinus	0.962	0.606	0.752	1e-102
225459818	384	PREDICTED: alcohol dehydrogenase-like 7	0.975	0.617	0.717	2e-98
7705214	389	alcohol dehydrogenase ADH [Solanum lycop	1.0	0.624	0.707	2e-98
297795321	390	hypothetical protein ARALYDRAFT_494804 [	0.971	0.605	0.708	2e-97
356554319	387	PREDICTED: alcohol dehydrogenase-like 7-	0.987	0.620	0.716	3e-97
356554321	388	PREDICTED: alcohol dehydrogenase-like 7-	1.0	0.626	0.711	3e-97
224065707	398	predicted protein [Populus trichocarpa]	0.995	0.608	0.765	4e-97
15238330	390	alcohol dehydrogenase-like 7 [Arabidopsi	0.971	0.605	0.717	6e-97
7705215	390	alcohol dehydrogenase ADH [Solanum lycop	0.971	0.605	0.716	1e-96
359492331	395	PREDICTED: alcohol dehydrogenase-like 7-	0.971	0.597	0.699	3e-96

>gi|255539138|ref|XP_002510634.1| alcohol dehydrogenase, putative [Ricinus communis] gi|223551335|gb|EEF52821.1| alcohol dehydrogenase, putative [Ricinus communis]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 176/234 (75%), Positives = 202/234 (86%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           + G PI+C+AA+   PGEPLVI+E++V PPN HEVR++IICTSLC SD+TFW++KDFPAV
Sbjct: 8   SVGTPIRCKAAVCRKPGEPLVIEEILVAPPNRHEVRIQIICTSLCQSDITFWRLKDFPAV 67

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FPRILGHEA+GVVESVGE+V    EGD VIP FL DC +C  C SKK NLCS  PFK+SP
Sbjct: 68  FPRILGHEAVGVVESVGEDVKEFKEGDTVIPTFLPDCGDCTDCISKKSNLCSKLPFKVSP 127

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
           WMPR +TSRF DL GE ++HF+SVSSFS+YTV+DIAH+ KVDP++PPNRACLLSCGVSTG
Sbjct: 128 WMPRYETSRFTDLNGEALYHFLSVSSFSQYTVIDIAHLTKVDPSIPPNRACLLSCGVSTG 187

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
           VGAAWRTANVE GSTVVIFGLGSIGLAVAEGARLCGATRIIGVD    KFEIG+
Sbjct: 188 VGAAWRTANVEAGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDTNPNKFEIGK 241

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459818|ref|XP_002285916.1| PREDICTED: alcohol dehydrogenase-like 7 [Vitis vinifera] gi|302141683|emb|CBI18886.3| unnamed protein product [Vitis vinifera]

 Score =  364 bits (935), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 170/237 (71%), Positives = 204/237 (86%)

Query: 7   SNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF 66
           + +T GKPI+CRAA+    GEPLV++EV+V PP + EVR+RIICTSLC+SD+TFWK+KD 
Sbjct: 3   AGETRGKPIRCRAAVCWKAGEPLVMEEVMVAPPLAGEVRIRIICTSLCYSDITFWKLKDP 62

Query: 67  PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
           P  FPRILGHEA+GVVESVGENV  V EGD+V+P FL DC EC  CRS+K NLCS FPFK
Sbjct: 63  PGCFPRILGHEAVGVVESVGENVSEVTEGDIVLPIFLPDCGECTDCRSEKSNLCSKFPFK 122

Query: 127 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
           +SPWMPR ++SRF DL+GE ++HF+ VSSFSEYTV+DIA++ K+DP +PPNRACL SCGV
Sbjct: 123 VSPWMPRYESSRFTDLKGEVLYHFLFVSSFSEYTVVDIANITKIDPNIPPNRACLFSCGV 182

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
           STGVGAAW+TANVE GSTV IFGLG+IGLAVAEGARLCGA+RIIGVD+  +KFEIG+
Sbjct: 183 STGVGAAWKTANVEKGSTVAIFGLGAIGLAVAEGARLCGASRIIGVDLNPDKFEIGK 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7705214|gb|AAB33480.2| alcohol dehydrogenase ADH [Solanum lycopersicum]

 Score =  363 bits (933), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 172/243 (70%), Positives = 203/243 (83%)

Query: 1   MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF 60
           M   K     AGKPI+C+AA+A   GEPLVI+EVIV PP +HEVRV+IICTSLCH+D+T 
Sbjct: 1   MASTKQYFSAAGKPIRCKAAVARKAGEPLVIEEVIVAPPKAHEVRVKIICTSLCHTDITL 60

Query: 61  WKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC 120
           WK+K+FP  FPRILGHEA GVVESVGE+VD + EGD V+P FL DC +CV C+SKK NLC
Sbjct: 61  WKLKEFPGCFPRILGHEAFGVVESVGEDVDELKEGDSVVPIFLPDCMDCVDCKSKKSNLC 120

Query: 121 SAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRAC 180
           S FP ++SP + R+ TSRF +  GET+HHF+ +SSFSEYTV+D+ +V K+DP +PPNRAC
Sbjct: 121 SKFPIQVSPLLHRNDTSRFSNAAGETLHHFLYISSFSEYTVVDVVNVTKIDPEIPPNRAC 180

Query: 181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
           LLSCGVSTGVGAAW+TANVE GSTVVIFGLGSIGLAVAEGARLCGATRIIGVD+ S KFE
Sbjct: 181 LLSCGVSTGVGAAWKTANVEPGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDINSNKFE 240

Query: 241 IGE 243
           IG+
Sbjct: 241 IGK 243

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795321|ref|XP_002865545.1| hypothetical protein ARALYDRAFT_494804 [Arabidopsis lyrata subsp. lyrata] gi|297311380|gb|EFH41804.1| hypothetical protein ARALYDRAFT_494804 [Arabidopsis lyrata subsp. lyrata]

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 168/237 (70%), Positives = 206/237 (86%), Gaps = 1/237 (0%)

Query: 8   NKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP 67
           NK++ KPI+C+AA++   GEPLV++E++V PP  +EVR+RIICT+LCHSDVTFWK++  P
Sbjct: 10  NKSSRKPIRCKAAVSRKAGEPLVMEEIMVAPPQPYEVRIRIICTALCHSDVTFWKLQVPP 69

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
           A FPRILGHEAIGVVESVGENV  VVEGD V+P F+ DC ECV C+S+K NLCS FPFK+
Sbjct: 70  ACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGECVDCKSQKSNLCSKFPFKV 129

Query: 128 SPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
           SPWMPR + +SRF DL G+T+ HF++VSSFSEYTVLD+A++VK+D ++PP+RACLLSCGV
Sbjct: 130 SPWMPRYENSSRFTDLNGQTLFHFLNVSSFSEYTVLDVANIVKIDSSIPPSRACLLSCGV 189

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
           STGVGAAW TA VE GSTVVIFGLGSIGLAVAEGARLCGA+RIIGVD+   KF++G+
Sbjct: 190 STGVGAAWETAKVEQGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPAKFQVGQ 246

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554319|ref|XP_003545495.1| PREDICTED: alcohol dehydrogenase-like 7-like isoform 1 [Glycine max]

 Score =  360 bits (924), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 172/240 (71%), Positives = 201/240 (83%)

Query: 4   EKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM 63
           +K +  + G+PI+C+AAI   PG PL I+E+IV PP   E R+R+ICTSLCHSDVTFWKM
Sbjct: 3   DKLATTSEGQPIRCKAAICRKPGSPLSIEEIIVAPPMPREARIRVICTSLCHSDVTFWKM 62

Query: 64  KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAF 123
           +  PA+ PRILGHEA+GVVESVGE+V  V +GDVV+P FL DC EC+ C+S K NLCS F
Sbjct: 63  EVPPAICPRILGHEAVGVVESVGEDVTEVTKGDVVVPIFLPDCGECIDCKSSKSNLCSKF 122

Query: 124 PFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS 183
           PF++SPWMPR  TSRF DL+G+ IHHF+ VSSFSEYTV+DIAH+ K+DP +PPNRACLLS
Sbjct: 123 PFEVSPWMPRHATSRFTDLKGDIIHHFLFVSSFSEYTVVDIAHLTKIDPAIPPNRACLLS 182

Query: 184 CGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
           CGVSTGVGAAWRTA VE GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  EK+E G+
Sbjct: 183 CGVSTGVGAAWRTAGVEPGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVNPEKYETGK 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554321|ref|XP_003545496.1| PREDICTED: alcohol dehydrogenase-like 7-like isoform 2 [Glycine max]

 Score =  360 bits (924), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 173/243 (71%), Positives = 201/243 (82%)

Query: 1   MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF 60
           M  +  S+   G+PI+C+AAI   PG PL I+E+IV PP   E R+R+ICTSLCHSDVTF
Sbjct: 1   MASQNSSSLCEGQPIRCKAAICRKPGSPLSIEEIIVAPPMPREARIRVICTSLCHSDVTF 60

Query: 61  WKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC 120
           WKM+  PA+ PRILGHEA+GVVESVGE+V  V +GDVV+P FL DC EC+ C+S K NLC
Sbjct: 61  WKMEVPPAICPRILGHEAVGVVESVGEDVTEVTKGDVVVPIFLPDCGECIDCKSSKSNLC 120

Query: 121 SAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRAC 180
           S FPF++SPWMPR  TSRF DL+G+ IHHF+ VSSFSEYTV+DIAH+ K+DP +PPNRAC
Sbjct: 121 SKFPFEVSPWMPRHATSRFTDLKGDIIHHFLFVSSFSEYTVVDIAHLTKIDPAIPPNRAC 180

Query: 181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
           LLSCGVSTGVGAAWRTA VE GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  EK+E
Sbjct: 181 LLSCGVSTGVGAAWRTAGVEPGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVNPEKYE 240

Query: 241 IGE 243
            G+
Sbjct: 241 TGK 243

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065707|ref|XP_002301931.1| predicted protein [Populus trichocarpa] gi|222843657|gb|EEE81204.1| predicted protein [Populus trichocarpa]

 Score =  360 bits (923), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 186/243 (76%), Positives = 215/243 (88%), Gaps = 1/243 (0%)

Query: 1   MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF 60
           MD EK S + AGKPI C+AA+A  PGEPLVI+E+IV PP+ HEVRVRIICTSLC SDVTF
Sbjct: 1   MDGEKFSVE-AGKPILCKAAVARKPGEPLVIEEIIVAPPSHHEVRVRIICTSLCQSDVTF 59

Query: 61  WKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC 120
           WK+KD PAVFPRILGHEAIGVVESVGE+VD VVEGDVVIP FL DC +C  C+SKK NLC
Sbjct: 60  WKLKDLPAVFPRILGHEAIGVVESVGEDVDEVVEGDVVIPVFLPDCGDCADCKSKKSNLC 119

Query: 121 SAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRAC 180
           S  PF++SPWMPRD+TSRF +L+GE ++HF++VSSFSEYTV+D AH+VK+DP++PP++AC
Sbjct: 120 SKLPFQVSPWMPRDKTSRFTNLKGEVLYHFLNVSSFSEYTVVDTAHIVKIDPSIPPSKAC 179

Query: 181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
           LLSCGVSTGVGAAWRTANVE GSTVVIFGLGSIGLAVAEGAR+ GAT+IIGVDV  EKFE
Sbjct: 180 LLSCGVSTGVGAAWRTANVEAGSTVVIFGLGSIGLAVAEGARISGATKIIGVDVNQEKFE 239

Query: 241 IGE 243
           I +
Sbjct: 240 IAK 242

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238330|ref|NP_199040.1| alcohol dehydrogenase-like 7 [Arabidopsis thaliana] gi|75333830|sp|Q9FH04.1|ADHL7_ARATH RecName: Full=Alcohol dehydrogenase-like 7 gi|10177010|dbj|BAB10198.1| alcohol dehydrogenase [Arabidopsis thaliana] gi|19698971|gb|AAL91221.1| alcohol dehydrogenase [Arabidopsis thaliana] gi|22136298|gb|AAM91227.1| alcohol dehydrogenase [Arabidopsis thaliana] gi|332007405|gb|AED94788.1| alcohol dehydrogenase-like 7 [Arabidopsis thaliana]

 Score =  359 bits (921), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 170/237 (71%), Positives = 204/237 (86%), Gaps = 1/237 (0%)

Query: 8   NKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP 67
           NK++ KPI+C+AA++   GEPLV++E++V PP   EVR+RIICT+LCHSDVTFWK++  P
Sbjct: 10  NKSSHKPIRCKAAVSRKAGEPLVMEEIMVAPPQPFEVRIRIICTALCHSDVTFWKLQVPP 69

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
           A FPRILGHEAIGVVESVGENV  VVEGD V+P F+ DC +CV C+S K NLCS FPFK+
Sbjct: 70  ACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGDCVDCKSHKSNLCSKFPFKV 129

Query: 128 SPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
           SPWMPR D +SRF DL GET+ HF++VSSFSEYTVLD+A+VVK+D ++PP+RACLLSCGV
Sbjct: 130 SPWMPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPPSRACLLSCGV 189

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
           STGVGAAW TA VE GSTVVIFGLGSIGLAVAEGARLCGA+RIIGVD+   KF++G+
Sbjct: 190 STGVGAAWETAKVEKGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPTKFQVGQ 246

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7705215|gb|AAB33481.2| alcohol dehydrogenase ADH [Solanum lycopersicum]

 Score =  358 bits (918), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 169/236 (71%), Positives = 201/236 (85%)

Query: 8   NKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP 67
           +KTAGKPI+CRAA+A   GEPLVI+EVIV PP +HEVR++IICTSLCH+D+T WK+K+FP
Sbjct: 10  SKTAGKPIRCRAAVARKAGEPLVIEEVIVAPPKAHEVRLKIICTSLCHTDITLWKLKEFP 69

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
             FPRILGHEA GVVESVGE+VD + EGD V+P FL DC +CV C+SKK NLCS FP + 
Sbjct: 70  GCFPRILGHEAFGVVESVGEDVDHLKEGDSVVPIFLPDCMDCVDCKSKKSNLCSKFPIQS 129

Query: 128 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187
           S  + RD TSRF +  GET+HH++ +SSFSEYTV+D+ +V K+DP +PPNRACLLSCGVS
Sbjct: 130 SLLLHRDDTSRFTNADGETLHHYLYISSFSEYTVVDVVNVTKIDPEIPPNRACLLSCGVS 189

Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
           TGVGAAW+TANVE GSTVVIFGLGS+GLAVAEGARLCGATRIIGV   S+KFEIG+
Sbjct: 190 TGVGAAWKTANVEPGSTVVIFGLGSVGLAVAEGARLCGATRIIGVGRNSDKFEIGK 245

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492331|ref|XP_002285917.2| PREDICTED: alcohol dehydrogenase-like 7-like [Vitis vinifera] gi|302141684|emb|CBI18887.3| unnamed protein product [Vitis vinifera]

 Score =  357 bits (916), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 165/236 (69%), Positives = 203/236 (86%)

Query: 8   NKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP 67
           ++T GKPI+CRAA++   GEPLV++EV+V PP + EVR+RIICTSLCHSD+TFWK+K+ P
Sbjct: 15  SQTRGKPIRCRAAVSRKAGEPLVMEEVMVAPPMAGEVRIRIICTSLCHSDLTFWKLKEPP 74

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
           A FPRILGHEA+GVVESVGENV  V EGD V+P F+ DC EC+ CRS+K NLCS FPF+I
Sbjct: 75  ACFPRILGHEAVGVVESVGENVTEVAEGDTVLPIFIPDCGECMDCRSEKSNLCSKFPFEI 134

Query: 128 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187
           SPW+PR ++SRF DL+GE ++HF++VSSFSEYTV+DI ++ K+ P +PPN+ACL SCGVS
Sbjct: 135 SPWLPRHKSSRFTDLKGEVLYHFLNVSSFSEYTVVDIDNITKISPAIPPNKACLFSCGVS 194

Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
           TGVGAAWRTA VE GSTVVIFGLG+IGLAVAEGARLCGA+RIIGVD   EKF++ +
Sbjct: 195 TGVGAAWRTAKVEKGSTVVIFGLGAIGLAVAEGARLCGASRIIGVDTNLEKFDVAK 250

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
TAIR|locus:2157627	390	AT5G42250 [Arabidopsis thalian	0.971	0.605	0.649	1.9e-83
TAIR|locus:2009512	386	AT1G22440 [Arabidopsis thalian	0.962	0.606	0.563	4.5e-66
TAIR|locus:2009522	388	AT1G22430 [Arabidopsis thalian	0.954	0.597	0.551	2e-65
TAIR|locus:2120663	389	AT4G22110 [Arabidopsis thalian	0.954	0.596	0.559	2.5e-65
TAIR|locus:2035619	394	AT1G32780 [Arabidopsis thalian	0.967	0.596	0.465	1.5e-51
TAIR|locus:2025237	379	ADH1 "alcohol dehydrogenase 1"	0.946	0.606	0.443	1.7e-50
TAIR|locus:2184575	381	AT5G24760 [Arabidopsis thalian	0.913	0.582	0.442	5.2e-49
ZFIN|ZDB-GENE-011003-1	376	adh5 "alcohol dehydrogenase 5"	0.958	0.619	0.444	2.3e-48
ZFIN|ZDB-GENE-040426-1165	380	zgc:63568 "zgc:63568" [Danio r	0.954	0.610	0.439	3.7e-48
ZFIN|ZDB-GENE-040426-1910	378	zgc:77938 "zgc:77938" [Danio r	0.962	0.619	0.432	2e-47

TAIR|locus:2157627 AT5G42250 [Arabidopsis thaliana (taxid:3702)]

 Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
 Identities = 154/237 (64%), Positives = 188/237 (79%)

Query:     8 NKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP 67
             NK++ KPI+C+AA++   GEPLV++E++V PP   EVR+RIICT+LCHSDVTFWK++  P
Sbjct:    10 NKSSHKPIRCKAAVSRKAGEPLVMEEIMVAPPQPFEVRIRIICTALCHSDVTFWKLQVPP 69

Query:    68 AVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
             A FPRILGHEAI                   +P F+ DC +CV C+S K NLCS FPFK+
Sbjct:    70 ACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGDCVDCKSHKSNLCSKFPFKV 129

Query:   128 SPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
             SPWMPR D +SRF DL GET+ HF++VSSFSEYTVLD+A+VVK+D ++PP+RACLLSCGV
Sbjct:   130 SPWMPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPPSRACLLSCGV 189

Query:   187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
             STGVGAAW TA VE GSTVVIFGLGSIGLAVAEGARLCGA+RIIGVD+   KF++G+
Sbjct:   190 STGVGAAWETAKVEKGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPTKFQVGQ 246

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2009512 AT1G22440 [Arabidopsis thaliana (taxid:3702)]

 Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 133/236 (56%), Positives = 165/236 (69%)

Query:    10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-A 68
             T GKPI+C+AAI    GEPLVI+E+ VDPP ++EVR++I+CTSLCH+DVTFWK+   P A
Sbjct:     7 TEGKPIRCKAAILRKAGEPLVIEEIQVDPPQAYEVRIKILCTSLCHTDVTFWKLDSGPLA 66

Query:    69 VFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFK-I 127
              FPRILGHEA+                   +P F   C EC  C S K N C+ +    +
Sbjct:    67 RFPRILGHEAVGVVESIGEKVDGFKQGDVVLPVFHPQCEECKECISPKSNWCTKYTNDYL 126

Query:   128 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187
             S       TSRFKD RGE IHHF+ VSSF+EYTV+DIAH+VK+ P +P + A LLSC V+
Sbjct:   127 SNTRRYGMTSRFKDSRGEDIHHFIFVSSFTEYTVVDIAHLVKISPEIPVDIAALLSCSVA 186

Query:   188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
             TG+GAAW+ A+VE GSTVVIFGLG++GLAVAEG RL GA +IIGVD+   KFEIG+
Sbjct:   187 TGLGAAWKVADVEEGSTVVIFGLGAVGLAVAEGVRLRGAAKIIGVDLNPAKFEIGK 242

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2009522 AT1G22430 [Arabidopsis thaliana (taxid:3702)]

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 129/234 (55%), Positives = 163/234 (69%)

Query:    12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVF 70
             GKPI C+AAI    GE LVI+++ VDPP ++EVR++I+CTSLCH+D+TFWK+   P + F
Sbjct:    11 GKPITCKAAICRKAGEALVIEDIHVDPPQAYEVRIKILCTSLCHTDLTFWKLSFGPISRF 70

Query:    71 PRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFK-ISP 129
             PRILGHEA+                   +P F   C EC  C+S K N C  +    IS 
Sbjct:    71 PRILGHEAVGVVESIGENVDGFKQGDVVLPVFHPYCEECKDCKSSKTNWCDRYAEDFISN 130

Query:   130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                    SRFKD  GE IHHF+ VSSFSEYTV+DIAH+VK+ P +P ++A LLSCGVSTG
Sbjct:   131 TRRYGMASRFKDSSGEVIHHFLFVSSFSEYTVVDIAHLVKISPEIPVDKAALLSCGVSTG 190

Query:   190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
             +GAAW+ ANVE GST+ IFGLG++GLAVAEGARL GA +IIG+D  S+KFE+G+
Sbjct:   191 IGAAWKVANVEEGSTIAIFGLGAVGLAVAEGARLRGAAKIIGIDTNSDKFELGK 244

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2120663 AT4G22110 [Arabidopsis thaliana (taxid:3702)]

 Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
 Identities = 131/234 (55%), Positives = 166/234 (70%)

Query:    12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVF 70
             GKPI+C+AA++  PGE LVI+E+ VDPP ++EVR++IICTSLCH+DV+F K+   P A F
Sbjct:    12 GKPIRCKAAVSRKPGEALVIEEIHVDPPQAYEVRIKIICTSLCHTDVSFSKIDSGPLARF 71

Query:    71 PRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFK-ISP 129
             PRILGHEA+                   +P F   C EC  C+S K N C+ F    +S 
Sbjct:    72 PRILGHEAVGVIESIGEHVNGFQQGDVVLPVFHPHCEECRDCKSSKSNWCARFADDFLSN 131

Query:   130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                   TSRFKD  GE I+HF+ VSSFSEYTV+DIAH+VK+ P +P ++A LLSCGVSTG
Sbjct:   132 TRRYGMTSRFKDSFGEDIYHFLFVSSFSEYTVVDIAHLVKISPDIPVDKAALLSCGVSTG 191

Query:   190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
             +GAAW+ ANVE GSTV +FGLG++GLAV EGARL GA +IIGVD+  EKFE+G+
Sbjct:   192 IGAAWKVANVEKGSTVAVFGLGAVGLAVGEGARLRGAGKIIGVDLNPEKFELGK 245

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2035619 AT1G32780 [Arabidopsis thaliana (taxid:3702)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 114/245 (46%), Positives = 150/245 (61%)

Query:     9 KTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFP 67
             +T GK I C+AA+   P  PLVI E+ VDPP   EVRV+I+ +S+CH+D+  W    +  
Sbjct:     3 ETQGKVITCKAAVVWGPKVPLVIQEICVDPPQKMEVRVKILYSSICHTDLGCWNGTNEAE 62

Query:    68 AVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAF---P 124
               FPRILGHEA+                   IP F  +C EC  C+ ++ NLC  +   P
Sbjct:    63 RAFPRILGHEAVGIVESVGEGVKDVKEGDYVIPTFNGECGECKVCKREESNLCERYHVDP 122

Query:   125 FK---ISPWMPRDQTSRFKD---LRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR 178
              K   ++    R  T+  KD    + + I+HF++ S+F+EYTVLD A VVK+DP  P  +
Sbjct:   123 MKRVMVNDGGTRFSTTINKDGGSSQSQPIYHFLNTSTFTEYTVLDSACVVKIDPNSPLKQ 182

Query:   179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 238
               LLSCGVSTGVGAAW  ANV+ G +  +FGLGS+GLAVAEGAR  GA+RIIGVD  + K
Sbjct:   183 MSLLSCGVSTGVGAAWNIANVKEGKSTAVFGLGSVGLAVAEGARARGASRIIGVDANASK 242

Query:   239 FEIGE 243
             FE G+
Sbjct:   243 FEKGK 247

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2025237 ADH1 "alcohol dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 103/232 (44%), Positives = 143/232 (61%)

Query:    10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
             T G+ I+C+AA+A   G+PLVI+EV V PP  HEVR++I+ TSLCH+DV FW+ K    +
Sbjct:     3 TTGQIIRCKAAVAWEAGKPLVIEEVEVAPPQKHEVRIKILFTSLCHTDVYFWEAKGQTPL 62

Query:    70 FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
             FPRI GHEA                    +P F  +C EC  C S++ N+C         
Sbjct:    63 FPRIFGHEAGGIVESVGEGVTDLQPGDHVLPIFTGECGECRHCHSEESNMCDLLRINTER 122

Query:   130 W-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST 188
               M  D  SRF  + G+ I+HF+  S+FSEYTV+    V K++P  P ++ C++SCG+ST
Sbjct:   123 GGMIHDGESRFS-INGKPIYHFLGTSTFSEYTVVHSGQVAKINPDAPLDKVCIVSCGLST 181

Query:   189 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
             G+GA    A  + G +V IFGLG++GL  AEGAR+ GA+RIIGVD  S++F+
Sbjct:   182 GLGATLNVAKPKKGQSVAIFGLGAVGLGAAEGARIAGASRIIGVDFNSKRFD 233

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045333 "cellular respiration" evidence=TAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006970 "response to osmotic stress" evidence=IGI

GO:0001666 "response to hypoxia" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=ISS;IMP

TAIR|locus:2184575 AT5G24760 [Arabidopsis thaliana (taxid:3702)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 100/226 (44%), Positives = 142/226 (62%)

Query:    15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
             I C AA+A   GEPLV++EV V PP   E+R++++CTSLC SD++ W+ +   ++ PRI 
Sbjct:    14 ITCNAAVAWRAGEPLVMEEVEVSPPQPLEIRIKVVCTSLCRSDLSAWESQ---SLLPRIF 70

Query:    75 GHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
             GHEA                    +  F  +C  C  C S K N+C     +    M  D
Sbjct:    71 GHEAAGIVESIGEGVTEFEKGDHVLAVFTGECGSCRHCISGKSNMCQVLGMERKGLMHSD 130

Query:   135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
             Q +RF  ++G+ ++H+ +VSSFSEYTV+     VKVDP  P ++ CLLSCGV+ G+GAAW
Sbjct:   131 QKTRFS-IKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAW 189

Query:   195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
               A+V+ GS+VVIFGLG++GL+VA+GA+L GA +I+GVD+   K E
Sbjct:   190 NVADVQKGSSVVIFGLGTVGLSVAQGAKLRGAAQILGVDINPAKAE 235

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

ZFIN|ZDB-GENE-011003-1 adh5 "alcohol dehydrogenase 5" [Danio rerio (taxid:7955)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 104/234 (44%), Positives = 136/234 (58%)

Query:    10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
             T GK I+C+AA+A   G+PL I+EV V PP +HEVRV+I  T +CH+D       D   +
Sbjct:     3 TTGKVIKCKAAVAWEAGKPLTIEEVEVAPPKAHEVRVKIHATGVCHTDAYTLSGSDPEGL 62

Query:    70 FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
             FP ILGHE                     IP ++  C EC  C++ K NLC         
Sbjct:    63 FPVILGHEGAGTVESVGEGVTKFKPGDTVIPLYVPQCGECKFCKNPKTNLCQKIRVTQGQ 122

Query:   130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +  D TSRF   +G+ + HF+  S+FSEYTV+    + KVD   P ++ CLL CG+STG
Sbjct:   123 GLMPDNTSRFT-CKGKQLFHFMGTSTFSEYTVVAEISLAKVDEHAPLDKVCLLGCGISTG 181

Query:   190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
              GAA  TA VE GST  +FGLG++GLAV  G +  GATRIIG+DV  +KFEI +
Sbjct:   182 YGAAINTAKVEAGSTCAVFGLGAVGLAVVMGCKSAGATRIIGIDVNPDKFEIAK 235

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1165 zgc:63568 "zgc:63568" [Danio rerio (taxid:7955)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 105/239 (43%), Positives = 141/239 (58%)

Query:     9 KTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW----KMK 64
             +T GK I+C+ A+A  PG+PL I++V V PP +HEVR++I  + +CHSD  +     KMK
Sbjct:     5 ETEGKVIKCKVAVAWEPGKPLSIEKVEVAPPKAHEVRIKIAASGVCHSDWAYLYDIAKMK 64

Query:    65 DFPAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFP 124
               P  FP +LGHE                     IP FL  C +C  C+S K NLC+   
Sbjct:    65 --PRPFPLVLGHEGAGVVESVGPGVTKVSIGDKVIPLFLPQCGQCERCQSPKTNLCTKNW 122

Query:   125 FKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC 184
              K    +  D TSR    + + +H F+ +S+FSEYTV+   +V K+ P  P +R CLL C
Sbjct:   123 EKTQQGVLADGTSRIT-CKNQQVHQFIGISTFSEYTVVPEDNVTKIHPDAPLDRVCLLGC 181

Query:   185 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
             GVSTG GAA  T  VE GST  +FGLG++GLA   G +  GA+RII VD+ S+KFEIG+
Sbjct:   182 GVSTGYGAAVNTGKVESGSTCAVFGLGAVGLAAVMGCKAAGASRIIAVDINSDKFEIGK 240

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1910 zgc:77938 "zgc:77938" [Danio rerio (taxid:7955)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 103/238 (43%), Positives = 140/238 (58%)

Query:     9 KTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM--KDF 66
             +T GK I+C+AA+A  PG+PL I++V V PP +HEVR++++ + +CH+D TF     K  
Sbjct:     2 ETEGKVIKCKAAVAWEPGKPLSIEDVEVAPPKAHEVRIKMVASGICHTDWTFLHEVGKTM 61

Query:    67 -PAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPF 125
              P  FP +LGHE                     IP  +  C +C  C S K NLCS    
Sbjct:    62 NPQPFPVVLGHEGAGVVESVGPGVTKMAKGDKVIPLVVPQCGQCERCLSPKTNLCSKNWE 121

Query:   126 KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
             K    +  D TSR    + + +H F+++S+FSEYTV+   +V K+ P  P +R CLL CG
Sbjct:   122 KTQQCLLADGTSRIT-CKNQQVHQFIAISTFSEYTVVPEDNVTKIHPDAPLDRVCLLGCG 180

Query:   186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
             VSTG GAA  T  VE GST  +FGLG++GLA   G +  GATRII VD+ S+KFEI +
Sbjct:   181 VSTGYGAAVNTGKVESGSTCAVFGLGAVGLAAVMGCKAAGATRIIAVDINSDKFEIAK 238

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FH04	ADHL7_ARATH	1, ., 1, ., 1, ., 1	0.7172	0.9711	0.6051	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	243
cd08301	369	cd08301, alcohol_DH_plants, Plant alcohol dehydrog	1e-123
PLN02740	381	PLN02740, PLN02740, Alcohol dehydrogenase-like	1e-100
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	1e-99
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	1e-95
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	1e-82
PLN02827	378	PLN02827, PLN02827, Alcohol dehydrogenase-like	2e-82
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	7e-78
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	6e-77
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	4e-76
TIGR02818	368	TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat	2e-71
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	6e-59
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	1e-54
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	7e-50
TIGR03451	358	TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi	2e-42
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	9e-38
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	9e-37
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	5e-35
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	2e-31
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	4e-28
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	5e-28
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	6e-28
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	2e-27
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	3e-27
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	1e-26
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	2e-25
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	3e-25
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	5e-25
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	7e-25
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	1e-24
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	1e-24
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	2e-24
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	4e-24
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	5e-24
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	6e-24
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	2e-23
pfam08240	108	pfam08240, ADH_N, Alcohol dehydrogenase GroES-like	2e-22
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	3e-22
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	4e-21
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	4e-21
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	9e-21
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	2e-19
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	5e-18
cd05281	341	cd05281, TDH, Threonine dehydrogenase	5e-18
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	1e-17
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	4e-17
cd08287	345	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase	4e-17
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	3e-16
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	5e-16
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	1e-15
PLN02702	364	PLN02702, PLN02702, L-idonate 5-dehydrogenase	1e-15
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	2e-15
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	3e-15
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	3e-15
cd08265	384	cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD	1e-14
PRK10309	347	PRK10309, PRK10309, galactitol-1-phosphate dehydro	1e-13
TIGR03201	349	TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1	1e-13
PRK10083	339	PRK10083, PRK10083, putative oxidoreductase; Provi	2e-13
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	1e-12
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	1e-12
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	2e-12
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	1e-11
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	3e-11
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	3e-11
cd08230	355	cd08230, glucose_DH, Glucose dehydrogenase	7e-10
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	7e-10
TIGR02819	393	TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenas	3e-09
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	4e-09
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	5e-09
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	8e-09
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	2e-08
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	6e-08
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	8e-08
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	9e-08
cd08262	341	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD	1e-07
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	1e-07
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	2e-07
cd08292	324	cd08292, ETR_like_2, 2-enoyl thioester reductase (	2e-07
PLN02178	375	PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase	2e-07
TIGR03366	280	TIGR03366, HpnZ_proposed, putative phosphonate cat	2e-07
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	4e-07
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	4e-07
PRK09880	343	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro	5e-07
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	7e-07
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	1e-06
PLN02586	360	PLN02586, PLN02586, probable cinnamyl alcohol dehy	1e-06
cd08242	319	cd08242, MDR_like, Medium chain dehydrogenases/red	2e-05
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	2e-04
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	2e-04
cd08291	324	cd08291, ETR_like_1, 2-enoyl thioester reductase (	2e-04
cd08238	410	cd08238, sorbose_phosphate_red, L-sorbose-1-phosph	4e-04
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	5e-04
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	0.001
TIGR02822	329	TIGR02822, adh_fam_2, zinc-binding alcohol dehydro	0.001
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	0.002
cd08252	336	cd08252, AL_MDR, Arginate lyase and other MDR fami	0.002

>gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase

 Score =  355 bits (912), Expect = e-123
 Identities = 125/229 (54%), Positives = 159/229 (69%), Gaps = 2/229 (0%)

Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           I C+AA+A   G+PLVI+EV V PP + EVR++I+ TSLCH+DV FW+ K    +FPRIL
Sbjct: 1   ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRIL 60

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW-MPR 133
           GHEA G+VESVGE V  +  GD V+P F  +C EC  C+S+K N+C           M  
Sbjct: 61  GHEAAGIVESVGEGVTDLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMIN 120

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAA 193
           D  SRF    G+ I+HFV  S+FSEYTV+ +  V K++P  P ++ CLLSCGVSTG+GAA
Sbjct: 121 DGKSRFSI-NGKPIYHFVGTSTFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAA 179

Query: 194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242
           W  A V+ GSTV IFGLG++GLAVAEGAR+ GA+RIIGVD+   KFE  
Sbjct: 180 WNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQA 228

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369

>gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like

 Score =  295 bits (756), Expect = e-100
 Identities = 132/239 (55%), Positives = 170/239 (71%), Gaps = 7/239 (2%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFPA 68
           T GK I C+AA+A  PGEPLV++E+ VDPP   EVR++I+ TS+CH+D++ WK   +   
Sbjct: 4   TQGKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQR 63

Query: 69  VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAF---PF 125
            +PRILGHEA G+VESVGE V+ +  GD VIP F  +C +C  C+  K NLC  +   PF
Sbjct: 64  AYPRILGHEAAGIVESVGEGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPF 123

Query: 126 KISPWMPRDQTSRFKDLR-GETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC 184
           K    M  D  +RF     G+ I+HF++ S+F+EYTVLD A VVK+DP  P  +  LLSC
Sbjct: 124 KSV--MVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVVKIDPNAPLKKMSLLSC 181

Query: 185 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
           GVSTGVGAAW TANV+ GS+V IFGLG++GLAVAEGAR  GA++IIGVD+  EKFE G+
Sbjct: 182 GVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGK 240

Length = 381

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score =  294 bits (754), Expect = e-99
 Identities = 116/229 (50%), Positives = 156/229 (68%), Gaps = 3/229 (1%)

Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           I+C+AA+A   G+PLVI+E+ V PP ++EVR++++ TS+CH+D+   +      +FP IL
Sbjct: 1   IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGF-KATLFPVIL 59

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           GHE  G+VESVGE V  +  GD VIP F+  C EC  CRS K NLC  +    S  MP D
Sbjct: 60  GHEGAGIVESVGEGVTNLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMP-D 118

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
            TSRF   +G+ I+HF+  S+FS+YTV+D  +V K+DP  P    CLL CG STG GAAW
Sbjct: 119 GTSRFT-CKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAW 177

Query: 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
            TA VE GSTV +FGLG++GL+   GA++ GA+RIIGVD+  +KFE  +
Sbjct: 178 NTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAK 226

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score =  284 bits (728), Expect = 1e-95
 Identities = 116/235 (49%), Positives = 155/235 (65%), Gaps = 13/235 (5%)

Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           I C+AA+A   G+PL I+EV V PP + EVR++I+ T +CH+D       D   +FP IL
Sbjct: 1   ITCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVIL 60

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW---- 130
           GHE  G+VESVGE V  V  GD VIP +  +C EC  C+S K NLC     KI       
Sbjct: 61  GHEGAGIVESVGEGVTSVKPGDHVIPLYTPECGECKFCKSGKTNLCQ----KIRATQGKG 116

Query: 131 -MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVL-DIAHVVKVDPTVPPNRACLLSCGVST 188
            MP D TSRF   +G+ I+HF+  S+FSEYTV+ +I+ V K++P  P ++ CLL CGV+T
Sbjct: 117 LMP-DGTSRFS-CKGKPIYHFMGTSTFSEYTVVAEIS-VAKINPEAPLDKVCLLGCGVTT 173

Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
           G GA   TA VE GSTV +FGLG++GLAV +GA+  GA+RIIG+D+  +KFE+ +
Sbjct: 174 GYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAK 228

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score =  251 bits (642), Expect = 1e-82
 Identities = 108/231 (46%), Positives = 141/231 (61%), Gaps = 2/231 (0%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+   P +P  I+E+ V PP +HEVR++I+ T +C SD      K     
Sbjct: 1   TAGKVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGK-LVTP 59

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP ILGHEA G+VESVGE V  V  GD VIP F+  C +C  C + + NLC         
Sbjct: 60  FPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQ 119

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            + +D TSRF   +G+ IHHF+  S+FSEYTV+D   V K+D   P  + CL+ CG STG
Sbjct: 120 GLMQDGTSRFT-CKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTG 178

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
            GAA  TA V  GST  +FGLG +GL+   G +  GA+RII VD+  +KF 
Sbjct: 179 YGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFA 229

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|215442 PLN02827, PLN02827, Alcohol dehydrogenase-like

 Score =  250 bits (641), Expect = 2e-82
 Identities = 113/229 (49%), Positives = 157/229 (68%), Gaps = 4/229 (1%)

Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           I CRAA+A   GE LV++EV V PP   E+R++++ TSLC SD++ W+ +   A+FPRI 
Sbjct: 11  ITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQ---ALFPRIF 67

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           GHEA G+VES+GE V    +GD V+  F  +C  C  C S K N+C     +    M  D
Sbjct: 68  GHEASGIVESIGEGVTEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLERKGVMHSD 127

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
           Q +RF  ++G+ ++H+ +VSSFSEYTV+     VKVDP  P ++ CLLSCGV+ G+GAAW
Sbjct: 128 QKTRFS-IKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAW 186

Query: 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
             A+V  GS+VVIFGLG++GL+VA+GA+L GA++IIGVD+  EK E  +
Sbjct: 187 NVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAK 235

Length = 378

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score =  238 bits (610), Expect = 7e-78
 Identities = 105/229 (45%), Positives = 139/229 (60%), Gaps = 2/229 (0%)

Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           ++ RAA+A   G+PL I+EV +DPP + EV VRI  T +CH+D       D P  FP +L
Sbjct: 1   MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDD-PEGFPAVL 59

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           GHE  G+VE+VGE V  V  GD VI  F  +C +C  C S K NLC A           D
Sbjct: 60  GHEGAGIVEAVGEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPD 119

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
            T+R     G  ++H++  S+F+EYTV+    +VK+DP  P  +ACLL CGV+TG+GA  
Sbjct: 120 GTTRLSG-NGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVV 178

Query: 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
            TA VE G TV +FGLG +GLA  +GA+  GA RII VD+  EK E+ +
Sbjct: 179 NTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAK 227

Length = 366

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score =  236 bits (603), Expect = 6e-77
 Identities = 100/225 (44%), Positives = 137/225 (60%), Gaps = 4/225 (1%)

Query: 17  CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGH 76
           C+AA+    G+PL I+E+ V PP + EVR++++ T +CH+D+     K  P   P ILGH
Sbjct: 1   CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKL-PTPLPVILGH 59

Query: 77  EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCS-AFPFKISPWMPRDQ 135
           E  G+VES+G  V  +  GD VIP F   C +C  C + + NLCS +        M  D 
Sbjct: 60  EGAGIVESIGPGVTTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMS-DG 118

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
           TSRF   +G+ IHHF+  S+F+EYTV+    + K+DP  P  + CL+ CG STG GAA  
Sbjct: 119 TSRFT-CKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVN 177

Query: 196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
           TA V  GST  +FGLG +GL+V  G +  GA+RII VD+  +KFE
Sbjct: 178 TAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFE 222

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score =  233 bits (598), Expect = 4e-76
 Identities = 100/224 (44%), Positives = 126/224 (56%), Gaps = 3/224 (1%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           RAA+    G+PL I+EV +D P   EV VRI    LCHSD+      D PA  P +LGHE
Sbjct: 2   RAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVT-GDLPAPLPAVLGHE 60

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
             GVVE VG  V GV  GD V+  ++  C  C  C   + NLC      I      D T 
Sbjct: 61  GAGVVEEVGPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCDL-GAGILGGQLPDGTR 119

Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
           RF    GE +     + +F+EYTV+  A VVK+D  +P +RA LL CGV+TGVGA   TA
Sbjct: 120 RF-TADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTA 178

Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
            V  G TV + G G +GL   +GAR+ GA+RII VD + EK E+
Sbjct: 179 RVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLEL 222

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

 Score =  222 bits (567), Expect = 2e-71
 Identities = 109/226 (48%), Positives = 141/226 (62%), Gaps = 1/226 (0%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           RAA+A A G+PL I+EV V+ P   EV VRI+ T +CH+D       D   VFP ILGHE
Sbjct: 3   RAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHE 62

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
             G+VE+VGE V  V  GD VIP + A+C EC  C S K NLC A        +  D TS
Sbjct: 63  GAGIVEAVGEGVTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTS 122

Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
           RF    G+ I+H++  S+FSEYTV+    + K++P  P    CLL CGV+TG+GA   TA
Sbjct: 123 RFS-KDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTA 181

Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
            VE G TV +FGLG IGL+V +GAR+  A+RII +D+   KFE+ +
Sbjct: 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAK 227

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score =  190 bits (484), Expect = 6e-59
 Identities = 87/229 (37%), Positives = 122/229 (53%), Gaps = 5/229 (2%)

Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           ++  AA+   PG P V+++V +D P   EV VRI+ T +CH+D+   +    P   P +L
Sbjct: 1   MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVV-RDGGLPTPLPAVL 59

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC-SAFPFKISPWMPR 133
           GHE  GVVE+VG  V G+  GD V+  F A C EC  C S     C + FP   S   P 
Sbjct: 60  GHEGAGVVEAVGSAVTGLKPGDHVVLSF-ASCGECANCLSGHPAYCENFFPLNFSGRRP- 117

Query: 134 DQTSRFKDLRGETIH-HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 192
           D ++      G  +H HF   SSF+ Y V+   +VVKVD  VP      L CG+ TG GA
Sbjct: 118 DGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGAGA 177

Query: 193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
                    GS++ +FG G++GLA    A++ G T II VD++  + E+
Sbjct: 178 VLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLEL 226

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score =  179 bits (455), Expect = 1e-54
 Identities = 85/226 (37%), Positives = 126/226 (55%), Gaps = 7/226 (3%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK--DFPA-VFPRIL 74
           +AA+   PG+P  ++E+ +D P + EV V+++ + LCHSD     +   D P   +P + 
Sbjct: 3   KAAVLWGPGQPWEVEEIELDDPKAGEVLVKLVASGLCHSD---EHLVTGDLPMPRYPILG 59

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           GHE  GVV  VG  V GV  GD V+  F+  C  C  C +   NLC      ++     D
Sbjct: 60  GHEGAGVVTKVGPGVTGVKPGDHVVLSFIPACGRCRWCSTGLQNLCDLGAALLTGSQISD 119

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
            T RF    G+ +     + +FSEYTV+  A VVK+D  +P ++ACL+ CGV TG G+A 
Sbjct: 120 GTYRFH-ADGQDVGQMCLLGTFSEYTVVPEASVVKIDDDIPLDKACLVGCGVPTGWGSAV 178

Query: 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
             A+V  G TVV+ G+G +G+   +GA + GA ++I VD +  K E
Sbjct: 179 NIADVRPGDTVVVMGIGGVGINAVQGAAVAGARKVIAVDPVEFKRE 224

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score =  166 bits (423), Expect = 7e-50
 Identities = 90/234 (38%), Positives = 118/234 (50%), Gaps = 10/234 (4%)

Query: 18  RAAIATAPG--------EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           RAA+    G         PLVI+EV +DPP   EV V+I    LCHSD++     D P  
Sbjct: 2   RAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVIN-GDRPRP 60

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P  LGHEA GVV  VGE V  +  GD V+  F+  C  C  C   +  LC         
Sbjct: 61  LPMALGHEAAGVVVEVGEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGA 120

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                   R + LRG  I+H + VS+F+EY V+    VVK+D  VP   A L  C V TG
Sbjct: 121 GTLLSGGRRLR-LRGGEINHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTG 179

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
           VGA   TA V  G +V + GLG +GL+   GA   GA++++ VD+  +K  +  
Sbjct: 180 VGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAR 233

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase

 Score =  147 bits (372), Expect = 2e-42
 Identities = 77/223 (34%), Positives = 114/223 (51%), Gaps = 10/223 (4%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           R  IA + G P+ ++ ++V  P   EV V I    +CH+D+ + +       FP +LGHE
Sbjct: 3   RGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHY-REGGINDEFPFLLGHE 61

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
           A GVVE+VGE V  V  GD V+ ++ A C +C  C+  +   C         +   + T 
Sbjct: 62  AAGVVEAVGEGVTDVAPGDYVVLNWRAVCGQCRACKRGRPWYC---------FDTHNATQ 112

Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
           +     G  +   + + +F+E T++      KVDP   P  A LL CGV  G+GAA  T 
Sbjct: 113 KMTLTDGTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVNTG 172

Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
            V+ G +V + G G +G A   GA L GA++II VD+   K E
Sbjct: 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLE 215

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score =  135 bits (341), Expect = 9e-38
 Identities = 72/227 (31%), Positives = 109/227 (48%), Gaps = 6/227 (2%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +AA+   P  PL I+E+ V  P   E+ +R+    +CHSD+   K  + P   P +LGHE
Sbjct: 2   KAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLK-GELPFPPPFVLGHE 60

Query: 78  AIGVVESVGENVDGVV---EGDVVIPHFLADCTECVGCRSKKGNLC-SAFPFKISPWMPR 133
             G V  VG NV+       GD V+  F+  C +C  C   K NLC   F +        
Sbjct: 61  ISGEVVEVGPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLY 120

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAA 193
           D T+R   L G  ++ + S+   +EY V+    +  +  ++    + +L C   T  GA 
Sbjct: 121 DGTTRLFRLDGGPVYMY-SMGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGAL 179

Query: 194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
              A+V  G TV + G+G +G +  + A+  GA+ II VDV  EK  
Sbjct: 180 KHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLA 226

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  130 bits (328), Expect = 9e-37
 Identities = 58/199 (29%), Positives = 79/199 (39%), Gaps = 28/199 (14%)

Query: 43  EVRVRIICTSLCHSDVTFWK-MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPH 101
           EV VR+    LC +D+   +     P   P ILGHE  GVV  VG  V GV  GD V+  
Sbjct: 1   EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVL 60

Query: 102 FLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTV 161
               C  C  CR                                 I        F+EY V
Sbjct: 61  PNLGCGTCELCRELCPGGG--------------------------ILGEGLDGGFAEYVV 94

Query: 162 LDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGA 221
           +   ++V +   +    A LL   ++T   A  R   ++ G TV++ G G +GL  A+ A
Sbjct: 95  VPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLA 154

Query: 222 RLCGATRIIGVDVISEKFE 240
           +  GA R+I  D   EK E
Sbjct: 155 KAAGA-RVIVTDRSDEKLE 172

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score =  127 bits (321), Expect = 5e-35
 Identities = 70/229 (30%), Positives = 102/229 (44%), Gaps = 27/229 (11%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPR 72
            +  +AA+    G+PL I+EV V  P   EV +++    +CH+D+   K  D+P    P 
Sbjct: 1   MMTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAK-GDWPVPKLPL 59

Query: 73  ILGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
           I GHE +G V  VGE V G+  GD V +   +  C EC  CRS   NLC           
Sbjct: 60  IPGHEIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLC----------- 108

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG 191
                   + + G T         ++EY V+   +VVK+   +    A  L C   T   
Sbjct: 109 ------PNQKITGYTTD-----GGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYR 157

Query: 192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
           A  + ANV+ G  V + G G +G    + A+  GA  +I +    EK E
Sbjct: 158 AL-KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLE 204

Length = 339

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score =  117 bits (296), Expect = 2e-31
 Identities = 62/225 (27%), Positives = 92/225 (40%), Gaps = 19/225 (8%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDV-TFWKMKDFPAVFPRILGH 76
           +AA+    G  + ++E     P   +V +R+  T +C SD+  +   + F      ILGH
Sbjct: 2   KAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGH 61

Query: 77  EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
           E +G V  VG  V G   GD V+      C  C  CR+ + NLC    F     +     
Sbjct: 62  EFVGEVVEVGV-VRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGL----- 115

Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT 196
                + G           F+EY  +     +   P      A  L+  ++T        
Sbjct: 116 --GGGIDG----------GFAEYVRVPADFNLAKLPDGIDEEAAALTEPLATAYHGHAER 163

Query: 197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
           A V  G TVV+ G G IGL     A+L GA+ +I VD   E+ E+
Sbjct: 164 AAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLEL 208

Length = 350

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score =  108 bits (273), Expect = 4e-28
 Identities = 68/231 (29%), Positives = 103/231 (44%), Gaps = 36/231 (15%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +A +   PGE L ++EV V  P   EV +++    +C +D+  ++  +F A  P + GHE
Sbjct: 2   KALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYE-GEFGAAPPLVPGHE 59

Query: 78  AIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
             GVV +VG  V G   GD   V P+    C EC  CR  + NLC               
Sbjct: 60  FAGVVVAVGSKVTGFKVGDRVAVDPNIY--CGECFYCRRGRPNLCENL------------ 105

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGA 192
                   G T +       F+EY V+    V K+   +    A L   LSC V      
Sbjct: 106 -----TAVGVTRN-----GGFAEYVVVPAKQVYKIPDNLSFEEAALAEPLSCAVH----- 150

Query: 193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
                 ++ G +V++FG G IGL +A+  +L GA+R+   +   EK E+ +
Sbjct: 151 GLDLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAK 201

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score =  108 bits (273), Expect = 5e-28
 Identities = 71/225 (31%), Positives = 92/225 (40%), Gaps = 25/225 (11%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           RAA+    GEPL I EV    P    V V +    +C SD   W+  D     P + GHE
Sbjct: 2   RAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHE 61

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
             GVV  VGE+V     GD V   F+  C  C  CR+   N+C              Q  
Sbjct: 62  FAGVVVEVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVC------------EHQ-- 107

Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHV--VKVDPTVPPNRACLLSCGVSTGVGAAWR 195
                       F    SF+EY  +  A V  V++   V    A  L C  +T   A   
Sbjct: 108 --------VQPGFTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRALVH 159

Query: 196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
            A V+ G  V + G G +GL+    A   GA R+I VD+  +K E
Sbjct: 160 QARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLE 203

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score =  108 bits (272), Expect = 6e-28
 Identities = 67/216 (31%), Positives = 91/216 (42%), Gaps = 24/216 (11%)

Query: 26  GEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-FPAVFPRILGHEAIGVVES 84
              LV++EV V  P   EV V++    +CHSD+             P  LGHE  G V  
Sbjct: 11  KGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVE 70

Query: 85  VGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRG 144
           VG  V     GD V    +  C  C  CR  +GNLC             +Q      + G
Sbjct: 71  VGAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLC------------LNQGMPGLGIDG 118

Query: 145 ETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGST 204
                      F+EY V+    +V V   VP  +A + +  V T   A  R   V+ G T
Sbjct: 119 ----------GFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGET 168

Query: 205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
           V++ GLG +GL   + A+  GA  +I VD+  EK E
Sbjct: 169 VLVIGLGGLGLNAVQIAKAMGAA-VIAVDIKEEKLE 203

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  106 bits (268), Expect = 2e-27
 Identities = 67/232 (28%), Positives = 99/232 (42%), Gaps = 40/232 (17%)

Query: 17  CRAAIATAPGE-PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP--AVFPRI 73
            +AA+    GE P  + +V V  P   EV V++  + +CH+D+      D+P     P I
Sbjct: 1   MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALG-DWPVKPKLPLI 59

Query: 74  LGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
            GHE  GVV +VG  V G+  GD V +      C +C  CR+    LC            
Sbjct: 60  GGHEGAGVVVAVGPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLCPN---------- 109

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 192
           +  +    D             +F+EY + D  +V  +   +   +A  L C   T V  
Sbjct: 110 QKNSGYTVD------------GTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVT-VYK 156

Query: 193 AWRTANVEVGSTVVIFG----LGSIGL--AVAEGARLCGATRIIGVDVISEK 238
           A + A ++ G  VVI G    LG +G+  A A G       R+I +DV  EK
Sbjct: 157 ALKKAGLKPGDWVVISGAGGGLGHLGVQYAKAMGL------RVIAIDVGDEK 202

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score =  106 bits (267), Expect = 3e-27
 Identities = 62/228 (27%), Positives = 102/228 (44%), Gaps = 30/228 (13%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +A + T PG+ L  +++    P   EV V++    +C SD+  + +       P +LGHE
Sbjct: 2   KALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRY-LGTGAYHPPLVLGHE 59

Query: 78  AIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
             G VE VG  VD +  GD   V P  L  C +C  C+  + +LCS +            
Sbjct: 60  FSGTVEEVGSGVDDLAVGDRVAVNP--LLPCGKCEYCKKGEYSLCSNY------------ 105

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
                D  G          +F+EY  +   +++K+   V    A ++    +  + A   
Sbjct: 106 -----DYIGSRRD-----GAFAEYVSVPARNLIKIPDHVDYEEAAMIE-PAAVALHAVRL 154

Query: 196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
            A + +G TVV+ G G+IGL   +  ++ GA R+I VD+  EK  +  
Sbjct: 155 -AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAR 201

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score =  104 bits (262), Expect = 1e-26
 Identities = 73/226 (32%), Positives = 105/226 (46%), Gaps = 27/226 (11%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV-FPRILGH 76
           +AAI   P +PL I+EV    P   EV +++    +C+ D+ FWK   FP   +P ILGH
Sbjct: 2   KAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWK-GFFPRGKYPLILGH 60

Query: 77  EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
           E +G VE VGE V+    GD VI ++   C +C  C S + NLC                
Sbjct: 61  EIVGTVEEVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLC---------------- 104

Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT 196
                 R    +       F+EY  +    +VK+   V    A L +C V T V A  + 
Sbjct: 105 ------RNRAEYGEEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHAL-KR 157

Query: 197 ANVEVGSTVVI-FGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
           A V+ G TV++    G +G+   + A+  GA R+I V    EK +I
Sbjct: 158 AGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKI 202

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score =  101 bits (255), Expect = 2e-25
 Identities = 73/225 (32%), Positives = 99/225 (44%), Gaps = 37/225 (16%)

Query: 18  RAAIATAPGEPLVIDEVIVDP-PNSHEVRVRIICTSLCHSDV-TFWKMKDFPAVFP-RIL 74
           +A      G+   I++ I    PN  +  VR    + C SDV T W     P      IL
Sbjct: 2   KAFAMLGIGKVGWIEKPIPVCGPN--DAIVRPTAVAPCTSDVHTVWG--GAPGERHGMIL 57

Query: 75  GHEAIGVVESVGENVDGVVEGD-VVIPHFLAD--CTECV-GCRSKKGNLCSAFPFKISPW 130
           GHEA+GVVE VG  V     GD V++P    D        G  S+ G +   + F     
Sbjct: 58  GHEAVGVVEEVGSEVKDFKPGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKF----- 112

Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYT-VLDI-AHVVKVDPTVPPNRACLLSCGVST 188
                 S FKD              F+EY  V D  A++  +   +   +A +L   +ST
Sbjct: 113 ------SNFKD------------GVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMST 154

Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 233
           G   A   AN+++G TV +FG+G +GL    GARL GA RII V 
Sbjct: 155 GFHGAEL-ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVG 198

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score =  101 bits (253), Expect = 3e-25
 Identities = 62/234 (26%), Positives = 94/234 (40%), Gaps = 36/234 (15%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +AA+   P + + ++EV V  P   EV V++    +C +DV   +        PRILGHE
Sbjct: 2   KAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHE 60

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
             G +  VG+ V G   GD V       C EC  C     N+C                 
Sbjct: 61  IAGEIVEVGDGVTGFKVGDRVFVAPHVPCGECHYCLRGNENMC----------------- 103

Query: 138 RFKDLRGETIHHFVSVSSFSEYTV-----LDIAHVVKVDPTVPPNRACL---LSCGVSTG 189
              + +            F+EY       +    V+K+   V    A L   L+C +   
Sbjct: 104 --PNYKKFGNL---YDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALVEPLACCI--- 155

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
              A R A ++ G TV++ G G IGL  A  A+  GA ++I  D+   + E  +
Sbjct: 156 --NAQRKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAK 207

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score =  100 bits (252), Expect = 5e-25
 Identities = 70/226 (30%), Positives = 108/226 (47%), Gaps = 31/226 (13%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +A +   PG  L + ++    P + EV VR+    +C SD+  +  ++  A +PRILGHE
Sbjct: 2   KALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHE 60

Query: 78  AIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
             G V  VGE V G+  GD  VV P+    C EC  CR  + N C               
Sbjct: 61  LSGEVVEVGEGVAGLKVGDRVVVDPYI--SCGECYACRKGRPNCC--------------- 103

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
               ++L+   +H       F+EY V+    ++  +  +  ++A L+   ++ G  A  R
Sbjct: 104 ----ENLQVLGVH---RDGGFAEYIVVPADALLVPE-GLSLDQAALVEP-LAIGAHAVRR 154

Query: 196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
            A V  G TV++ G G IGL V + A+  GA R+I VD+  E+ E 
Sbjct: 155 -AGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEF 198

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score =   99 bits (250), Expect = 7e-25
 Identities = 68/233 (29%), Positives = 96/233 (41%), Gaps = 32/233 (13%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRIL 74
           +AA     G+PL +++V V  P   +V VR+    +CHSD+           P   P  L
Sbjct: 2   KAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTL 61

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           GHE  G VE VG  VDG+ EGD V+ H    C  C  CR  + N C              
Sbjct: 62  GHENAGWVEEVGSGVDGLKEGDPVVVHPPWGCGTCRYCRRGEENYCEN------------ 109

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
             +RF    G           F+EY ++    +VK+   + P  A  L+    T   A  
Sbjct: 110 --ARF---PGIGTD-----GGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAVK 159

Query: 195 RTANV-EVGSTVVIF---GLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
           +     + GSTVV+    GLG I + +    R      +I VD   E  ++ E
Sbjct: 160 KALPYLDPGSTVVVIGVGGLGHIAVQI---LRALTPATVIAVDRSEEALKLAE 209

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score =  100 bits (250), Expect = 1e-24
 Identities = 68/235 (28%), Positives = 95/235 (40%), Gaps = 28/235 (11%)

Query: 17  CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGH 76
            RAA+ T PG+PL I EV +       V VR+    +C SDV     +      P ILGH
Sbjct: 1   ARAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGH 60

Query: 77  EAIGVVESVGENVD------GVVEGD-VVIPHFLADCTECVGCRSKKGNLC-SAFPFKIS 128
           E +G V ++G  V        +  GD V        C  C  C       C +   +   
Sbjct: 61  EGVGRVVALGGGVTTDVAGEPLKVGDRVTWSVGAP-CGRCYRCLVGDPTKCENRKKYGHE 119

Query: 129 PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI-AHVVKVDPTVPPNRACLLSCGVS 187
                        L G           ++E+  L     +V+V   VP   A   +C ++
Sbjct: 120 ASCDDPH------LSG----------GYAEHIYLPPGTAIVRVPDNVPDEVAAPANCALA 163

Query: 188 TGVGAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
           T V AA   A  V  G TVV+ G G +GL     A+L GA R+I +D   E+ E+
Sbjct: 164 T-VLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLEL 217

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score = 99.3 bits (248), Expect = 1e-24
 Identities = 65/226 (28%), Positives = 98/226 (43%), Gaps = 27/226 (11%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV-FPRILGH 76
           +A I     +   I+EV    P   EV +++    LC+ D+   +   +P + +P ILGH
Sbjct: 2   KAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQ-GFYPRMKYPVILGH 60

Query: 77  EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
           E +G VE VGENV G   GD V     A    C  CRS +   C                
Sbjct: 61  EVVGTVEEVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYC---------------- 104

Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT 196
            + +   GE +  F     F+EY  + +  +VKV P V    A ++ C          R 
Sbjct: 105 -KNRLGYGEELDGF-----FAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGL-RR 157

Query: 197 ANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
           A V+ G TV++ G  G +G+   + A+  GA ++I V     K +I
Sbjct: 158 AGVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKI 202

Length = 334

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score = 99.1 bits (248), Expect = 2e-24
 Identities = 72/234 (30%), Positives = 98/234 (41%), Gaps = 43/234 (18%)

Query: 19  AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM---KDFPAVFPRILG 75
           AA+   PG+ L ++E  +  P   EV VR+    +C SDV ++K     DF    P +LG
Sbjct: 1   AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLG 59

Query: 76  HEAIGVVESVGENVDGVVEGDVV-----IPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           HE+ G V +VG  V  +  GD V     +P     C  C  C+S + NLC    F  +P 
Sbjct: 60  HESAGTVVAVGSGVTHLKVGDRVAIEPGVP-----CRTCEFCKSGRYNLCPDMRFAATP- 113

Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVS 187
            P D T                      Y         K+   V      L   LS GV 
Sbjct: 114 -PVDGT-------------------LCRYVNHPADFCHKLPDNVSLEEGALVEPLSVGV- 152

Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
                A R A V  G TV++FG G IGL  A  A+  GAT+++  D+   + E 
Sbjct: 153 ----HACRRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEF 202

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score = 98.1 bits (245), Expect = 4e-24
 Identities = 61/237 (25%), Positives = 89/237 (37%), Gaps = 36/237 (15%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW------------KMKD 65
           +AA    PG+PL   E+    P   EV V++    +CHSD+  W             + D
Sbjct: 2   KAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDD 61

Query: 66  FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPF 125
                P +LGHE +G V +VG +   V  GD V+ +    C EC  C +   NLC+    
Sbjct: 62  RGVKLPLVLGHEIVGEVVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCA---- 117

Query: 126 KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
                         K               ++EY ++  +  +     + P  A  L+C 
Sbjct: 118 --------------KGRALGIFQD----GGYAEYVIVPHSRYLVDPGGLDPALAATLACS 159

Query: 186 VSTGVGAAWRTANVEVGST-VVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
             T   A  +     V    VVI G G +GL      +  G   II VD+   K E 
Sbjct: 160 GLTAYSAV-KKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEA 215

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 97.6 bits (244), Expect = 5e-24
 Identities = 59/225 (26%), Positives = 87/225 (38%), Gaps = 41/225 (18%)

Query: 18  RAAIATAPG----EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF----WKMKDFPAV 69
           +A +   PG     PL + EV V  P   EV +++    +C +D+            P  
Sbjct: 2   KAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLP----PPK 57

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKIS 128
            P I GHE +G VE+VG  V     GD V +P   + C EC  CRS + NLC    F   
Sbjct: 58  LPLIPGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFT-- 115

Query: 129 PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST 188
                          G T+        ++EY V D      +        A  L C    
Sbjct: 116 ---------------GYTVD-----GGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGII 155

Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATR 228
           G   A + A ++ G  + ++G G+       +A  +GA +   TR
Sbjct: 156 GYR-ALKLAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTR 199

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score = 97.7 bits (244), Expect = 6e-24
 Identities = 59/195 (30%), Positives = 82/195 (42%), Gaps = 22/195 (11%)

Query: 41  SHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIP 100
            H+  VR+  TS+C SD+  ++     A    ILGHE +G V  VG +V  +  GD V  
Sbjct: 25  PHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHEFVGEVVEVGSDVKRLKPGDRVSV 84

Query: 101 HFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYT 160
             +  C  C  CR      C    +               D               +EY 
Sbjct: 85  PCITFCGRCRFCRRGYHAHCENGLWGWKL-------GNRID------------GGQAEYV 125

Query: 161 VLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVA 218
            +  A  ++ K+   +P   A +LS  + TG   A   A ++ GSTV + G G +GL   
Sbjct: 126 RVPYADMNLAKIPDGLPDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAV 184

Query: 219 EGARLCGATRIIGVD 233
            GARL GA RII VD
Sbjct: 185 AGARLLGAARIIAVD 199

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score = 96.6 bits (241), Expect = 2e-23
 Identities = 55/213 (25%), Positives = 85/213 (39%), Gaps = 23/213 (10%)

Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL-GHEAIGVVESVGE 87
           + + E  V  P   EV +R+  + LC SD+ ++        +  ++ GHE  GVV +VG 
Sbjct: 12  VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGP 71

Query: 88  NVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI 147
            V     GD V+ +    C  C  CR     LC++                  +  G   
Sbjct: 72  GVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYG-----------WNRDG--- 117

Query: 148 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVI 207
                    +EY ++    ++ +   +      LL CG+ T    A R   V    TV++
Sbjct: 118 -------GHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTA-YHALRRVGVSGRDTVLV 169

Query: 208 FGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
            G G +GL     AR  GA  +IGVD   E+ E
Sbjct: 170 VGAGPVGLGALMLARALGAEDVIGVDPSPERLE 202

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain

 Score = 88.1 bits (219), Expect = 2e-22
 Identities = 32/79 (40%), Positives = 44/79 (55%)

Query: 42  HEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPH 101
            EV VR+    +C SD+  ++ +  P   P ILGHE  G+VE VG  V G+  GD V+ +
Sbjct: 2   GEVLVRVKAAGICGSDLHIYRGEPPPVKLPLILGHEGAGIVEEVGPGVTGLKVGDRVVVY 61

Query: 102 FLADCTECVGCRSKKGNLC 120
            L  C +C  CR  + NLC
Sbjct: 62  PLIPCGKCAACREGRENLC 80

This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 92.7 bits (231), Expect = 3e-22
 Identities = 64/209 (30%), Positives = 94/209 (44%), Gaps = 22/209 (10%)

Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF---PRILGHEAIGVVESV 85
           L ++E     P   EVRVR+    +C SD+ +++   F  V    P +LGHE  GVVE+V
Sbjct: 9   LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAV 68

Query: 86  GENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGE 145
           G  V G+  G  V  +    C  C  CR+ + NLC    F  S         RF  ++G 
Sbjct: 69  GPGVTGLAPGQRVAVNPSRPCGTCDYCRAGRPNLCLNMRFLGS-------AMRFPHVQG- 120

Query: 146 TIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTV 205
                     F EY V+D +  V +   +   RA  L+  ++  + A  R  ++  G  V
Sbjct: 121 ---------GFREYLVVDASQCVPLPDGLSLRRAA-LAEPLAVALHAVNRAGDL-AGKRV 169

Query: 206 VIFGLGSIGLAVAEGARLCGATRIIGVDV 234
           ++ G G IG  V   AR  GA  I+  D+
Sbjct: 170 LVTGAGPIGALVVAAARRAGAAEIVATDL 198

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score = 89.7 bits (223), Expect = 4e-21
 Identities = 61/224 (27%), Positives = 93/224 (41%), Gaps = 25/224 (11%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +AA+  A G PL  +EV V  P   EV ++I    +CH+D+   +     + +P + GHE
Sbjct: 1   KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHE 60

Query: 78  AIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
            +G V  VG  V+G   GD V +   +  C  C  CR    NLC                
Sbjct: 61  IVGEVVEVGAGVEGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKA------------- 107

Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT 196
                  G     + +   ++EY V D  + V +   +P  +A  L C   T V +A R 
Sbjct: 108 ----VNTG-----YTTQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGIT-VYSALRD 157

Query: 197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
           A    G  V + G+G +G    + AR  G    + +    +K E
Sbjct: 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRE 200

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score = 90.3 bits (225), Expect = 4e-21
 Identities = 70/227 (30%), Positives = 103/227 (45%), Gaps = 34/227 (14%)

Query: 30  VIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFP-RILGHEAIGVVESVGEN 88
           V D  I DP    +  VR+  T++C SD+  +     P +    ILGHE +GVVE VG  
Sbjct: 17  VPDPKIEDP---TDAIVRVTATAICGSDLHLY-HGYIPGMKKGDILGHEFMGVVEEVGPE 72

Query: 89  VDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI 147
           V  +  GD VV+P  +A C EC  C+    + C             D T+   ++     
Sbjct: 73  VRNLKVGDRVVVPFTIA-CGECFYCKRGLYSQC-------------DNTNPSAEMAKLYG 118

Query: 148 HHFVSVSSFS-----------EYTVLDIAHV--VKVDPTVPPNRACLLSCGVSTGVGAAW 194
           H    +  +S           EY  +  A V   K+   +   +A  LS  + TG  AA 
Sbjct: 119 HAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGPFKIPDDLSDEKALFLSDILPTGYHAA- 177

Query: 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
             A V+ G TV ++G G +GL  A  A+L GA R+I +D + E+ E+
Sbjct: 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEM 224

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 88.5 bits (220), Expect = 9e-21
 Identities = 61/218 (27%), Positives = 91/218 (41%), Gaps = 31/218 (14%)

Query: 18  RAAIATAPGEPLV-IDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGH 76
           +A + T PG   V + EV    P   EV +++    +C SD+  +K    P   P +LGH
Sbjct: 2   KALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGH 61

Query: 77  EAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
           E  G +  VG +V+G   GD VV     + C  C  CR    NLC               
Sbjct: 62  EFSGTIVEVGPDVEGWKVGDRVVSETTFSTCGRCPYCRRGDYNLCPH------------- 108

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGA 192
               +   G           F+EY ++    + ++   +    A L   L+  V     A
Sbjct: 109 ----RKGIGTQAD-----GGFAEYVLVPEESLHELPENLSLEAAALTEPLAVAVH----A 155

Query: 193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRII 230
               + +  G TVV+FG G IGL  A+ A+L GAT ++
Sbjct: 156 VAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGATVVV 193

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score = 85.3 bits (212), Expect = 2e-19
 Identities = 59/227 (25%), Positives = 82/227 (36%), Gaps = 58/227 (25%)

Query: 31  IDEVIVDPPNSHEVRVRIICTSLCHSDV-------TFWKMKDFP---------AVFPRIL 74
           ++EV   P    EV++++    +C SD+        F      P            P  L
Sbjct: 14  VEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIF-----IPTEGHPHLTGETAPVTL 68

Query: 75  GHEAIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           GHE  GVV  VG  V G   GD  VV P     C  C  C+    NLC +  F       
Sbjct: 69  GHEFSGVVVEVGSGVTGFKVGDRVVVEPTI--KCGTCGACKRGLYNLCDSLGF------- 119

Query: 133 RDQTSRFKDLRGETIHHFVSVSS--FSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVS 187
                             +      F+EY V+   HV K+   VP   A L   L+    
Sbjct: 120 ----------------IGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALVEPLAVAWH 163

Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 234
                A R +  + G T ++ G G IGL      +  GA++II  + 
Sbjct: 164 -----AVRRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEP 205

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 81.4 bits (202), Expect = 5e-18
 Identities = 50/207 (24%), Positives = 78/207 (37%), Gaps = 22/207 (10%)

Query: 22  ATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGV 81
           A      L        P    +V ++I    +CHSD+   + +  P  +P + GHE +G+
Sbjct: 5   ARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEIVGI 64

Query: 82  VESVGENVDGVVEGDVVIPHFLAD-CTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFK 140
           V +VG  V     GD V      D C  C  C+S +   C           P+   +   
Sbjct: 65  VVAVGSKVTKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYC-----------PKGVVTYNG 113

Query: 141 DLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVE 200
                TI        ++++ V+D   V K+   +    A  L C   T V +  +   V 
Sbjct: 114 KYPDGTITQ----GGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGIT-VYSPLKRNGVG 168

Query: 201 VGSTVVIFGLGSIG-----LAVAEGAR 222
            G  V + G+G +G      A A GA 
Sbjct: 169 PGKRVGVVGIGGLGHLAVKFAKALGAE 195

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score = 81.1 bits (201), Expect = 5e-18
 Identities = 62/229 (27%), Positives = 93/229 (40%), Gaps = 46/229 (20%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPA---VFPRIL 74
           +A + T  G    + EV V  P   EV ++++  S+C +DV  ++  ++       P I 
Sbjct: 2   KAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIF 61

Query: 75  GHEAIGVVESVGENVDGVVEGDVV-----IPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           GHE  G V  VGE V  V  GD V     I      C +C  CR+   ++C         
Sbjct: 62  GHEFAGEVVEVGEGVTRVKVGDYVSAETHIV-----CGKCYQCRTGNYHVC--------- 107

Query: 130 WMPRDQTSRF--KDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187
                Q ++    D  G           F+EY V+   ++ K D  +PP  A      + 
Sbjct: 108 -----QNTKILGVDTDG----------CFAEYVVVPEENLWKNDKDIPPEIA-----SIQ 147

Query: 188 TGVGAAWRTANVE--VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 234
             +G A  T       G +V+I G G IGL     A+  GA+ +I  D 
Sbjct: 148 EPLGNAVHTVLAGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDP 196

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score = 80.4 bits (199), Expect = 1e-17
 Identities = 55/220 (25%), Positives = 88/220 (40%), Gaps = 34/220 (15%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV-FPRIL 74
           +A +    G P  L   ++    P   EV VR+   +L H D+   +      +  P IL
Sbjct: 2   KAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHIL 61

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           G +  GVVE+VG  V  V  G  V+ +    C  C  C + + NLC+ +           
Sbjct: 62  GSDGAGVVEAVGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLCAQY----------- 110

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
                  + GE +        ++EY  +   +++ +   +    A        T    AW
Sbjct: 111 ------GILGEHVDGG-----YAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLT----AW 155

Query: 195 RT----ANVEVGSTVVIFGLGS-IGLAVAEGARLCGATRI 229
                 A +  G TV++ G GS +G A  + A+L GAT I
Sbjct: 156 HMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVI 195

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score = 78.8 bits (195), Expect = 4e-17
 Identities = 59/195 (30%), Positives = 84/195 (43%), Gaps = 33/195 (16%)

Query: 46  VRIICTSLCHSDVTFWKMKDFPAVFP-RILGHEAIGVVESVGENVDGVVEGDVVIPHFLA 104
           V+++ T++C +D+   K  D P V P RILGHE +GVVE VG  V     GD V+   ++
Sbjct: 30  VKMLKTTICGTDLHILK-GDVPTVTPGRILGHEGVGVVEEVGSAVTNFKVGDRVLISCIS 88

Query: 105 DCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH----HFVSV--SSFSE 158
            C  C  CR    + C +       W           + G  I      +V +  +  S 
Sbjct: 89  SCGTCGYCRKGLYSHCES-----GGW-----------ILGNLIDGTQAEYVRIPHADNSL 132

Query: 159 YTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVA 218
           Y         K+   V    A +LS  + TG         V+ G TV I G G +GLA  
Sbjct: 133 Y---------KLPEGVDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAAL 183

Query: 219 EGARLCGATRIIGVD 233
             A+L   ++II VD
Sbjct: 184 LTAQLYSPSKIIMVD 198

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like

 Score = 78.5 bits (194), Expect = 4e-17
 Identities = 71/224 (31%), Positives = 96/224 (42%), Gaps = 39/224 (17%)

Query: 18  RAAIATAPGE---PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           RA +   PG+     V D VI +P    +  +R++ T +C SD+  ++    P   P  +
Sbjct: 2   RATVIHGPGDIRVEEVPDPVIEEP---TDAVIRVVATCVCGSDLWPYRGVS-PTRAPAPI 57

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           GHE +GVVE VG  V  V  GD VI  F      C  CR+     C              
Sbjct: 58  GHEFVGVVEEVGSEVTSVKPGDFVIAPFAISDGTCPFCRAGFTTSC-------------- 103

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH--VVKVDPTVPPNRACL------LSCGV 186
                  + G     FV      EY  + +A   +VKV P  P +   L      LS  +
Sbjct: 104 -------VHGGFWGAFVD-GGQGEYVRVPLADGTLVKV-PGSPSDDEDLLPSLLALSDVM 154

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRII 230
            TG  AA  +A V  GSTVV+ G G++GL     A+  GA RII
Sbjct: 155 GTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERII 197

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score = 76.1 bits (188), Expect = 3e-16
 Identities = 55/198 (27%), Positives = 86/198 (43%), Gaps = 24/198 (12%)

Query: 46  VRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLAD 105
           V++   ++C SD+  ++          +LGHE +G V  VG  V  +  GD V+  F   
Sbjct: 30  VKVTAAAICGSDLHIYRGHIPSTP-GFVLGHEFVGEVVEVGPEVRTLKVGDRVVSPFTIA 88

Query: 106 CTECVGCRSKKGNLCS---AFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVL 162
           C EC  CR  +   C+    F +  SP +   Q              +V V  F++ T  
Sbjct: 89  CGECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQA------------EYVRV-PFADGT-- 133

Query: 163 DIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGAR 222
               ++K+   +    A LL   + TG   A + A V  G TV + G G +GL     A+
Sbjct: 134 ----LLKLPDGLSDEAALLLGDILPTGYFGA-KRAQVRPGDTVAVIGCGPVGLCAVLSAQ 188

Query: 223 LCGATRIIGVDVISEKFE 240
           + GA R+  VD + E+ E
Sbjct: 189 VLGAARVFAVDPVPERLE 206

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score = 75.7 bits (186), Expect = 5e-16
 Identities = 58/224 (25%), Positives = 91/224 (40%), Gaps = 38/224 (16%)

Query: 19  AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF-----WKMKDFPAVFPRI 73
           A + T PG    + EV V  P   EV ++++ TS+C +DV       W         P++
Sbjct: 1   ALMKTKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKP--PQV 58

Query: 74  LGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR 133
           +GHE  G V  +G  V+G+  GD V       C +C  CR  + ++C             
Sbjct: 59  VGHEVAGEVVGIGPGVEGIKVGDYVSVETHIVCGKCYACRRGQYHVC------------- 105

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGV 190
                    +   I    +   F+EY V+   ++ K   ++PP  A +   L   V T +
Sbjct: 106 ---------QNTKIFGVDTDGCFAEYAVVPAQNIWKNPKSIPPEYATIQEPLGNAVHTVL 156

Query: 191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 234
                 A    G +V++ G G IGL     A+  GA  +I  D 
Sbjct: 157 ------AGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDP 194

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score = 74.7 bits (184), Expect = 1e-15
 Identities = 54/228 (23%), Positives = 77/228 (33%), Gaps = 51/228 (22%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRIL 74
           +A +    G P  L + EV    P   EV VR+    +   DV   +    P    P I 
Sbjct: 2   KAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIP 61

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           G EA GVV +VG  V G   GD V                                    
Sbjct: 62  GSEAAGVVVAVGSGVTGFKVGDRVAALGG------------------------------- 90

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
                                ++EY V+    +V +   +    A  L     T   A +
Sbjct: 91  ---------------VGRDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALF 135

Query: 195 RTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
             A ++ G TV++ G  G +G A  + A+  GAT +  V   SEK E+
Sbjct: 136 DRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSS-SEKLEL 182

Length = 326

>gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase

 Score = 74.8 bits (184), Expect = 1e-15
 Identities = 66/219 (30%), Positives = 91/219 (41%), Gaps = 32/219 (14%)

Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MK--DFPAVFPRILGHEAIGVVESV 85
           L I    + P   H+VRVR+    +C SDV + K M+  DF    P ++GHE  G++E V
Sbjct: 29  LKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEV 88

Query: 86  GENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGE 145
           G  V  +V GD V       C  C  C+  + NLC    F  +P                
Sbjct: 89  GSEVKHLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKFFATP---------------- 132

Query: 146 TIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGAAWRTANVEVG 202
            +H      S +   V       K+   V      +   LS GV      A R AN+   
Sbjct: 133 PVH-----GSLANQVVHPADLCFKLPENVSLEEGAMCEPLSVGVH-----ACRRANIGPE 182

Query: 203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
           + V++ G G IGL     AR  GA RI+ VDV  E+  +
Sbjct: 183 TNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSV 221

Length = 364

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score = 73.9 bits (182), Expect = 2e-15
 Identities = 47/224 (20%), Positives = 74/224 (33%), Gaps = 61/224 (27%)

Query: 23  TAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW---KMKDFPAVFPRILGHEAI 79
           T PG    ++E     P   +V VR+    +C SD+  +   +        P   GHE  
Sbjct: 2   TGPGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGW 60

Query: 80  GVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRF 139
           G V ++G  V G+  GD V                                         
Sbjct: 61  GRVVALGPGVRGLAVGDRVA---------------------------------------- 80

Query: 140 KDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP--PNRACLLSCGVSTGVGAAWRTA 197
                      +S  +F+EY + D  H V +   +         L C ++      +R  
Sbjct: 81  ----------GLSGGAFAEYDLADADHAVPLPSLLDGQAFPGEPLGCALN-----VFRRG 125

Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
            +  G TV + G G IGL   + A   GA R+I +D    +  +
Sbjct: 126 WIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLAL 169

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score = 73.3 bits (181), Expect = 3e-15
 Identities = 62/230 (26%), Positives = 100/230 (43%), Gaps = 48/230 (20%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF-----WKMKDFPAVFPR 72
           +A +       L + +V V  P  ++V +++  T++C +DV       W  K  P   P 
Sbjct: 2   KALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPV--PM 59

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVVIP--HFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           ++GHE +G V  VG  V G   GD V    H +  C  C  CR+ + +LC          
Sbjct: 60  VVGHEFVGEVVEVGSEVTGFKVGDRVSGEGHIV--CGHCRNCRAGRRHLC---------- 107

Query: 131 MPRDQTSRFKDLRGETIHHFVSVS---SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187
                    ++ +G      V V+   +F+EY V+   +V K+   +P + A +      
Sbjct: 108 ---------RNTKG------VGVNRPGAFAEYLVIPAFNVWKIPDDIPDDLAAIFD---- 148

Query: 188 TGVGAAWRTA---NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 234
              G A  TA   ++ VG  V+I G G IG+  A  A+  GA  ++  DV
Sbjct: 149 -PFGNAVHTALSFDL-VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDV 196

Length = 341

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 73.4 bits (181), Expect = 3e-15
 Identities = 54/210 (25%), Positives = 84/210 (40%), Gaps = 41/210 (19%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +A   T PG PL + E  V  P   EV +++    +CHSD    +       +PR+ GHE
Sbjct: 2   KAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHE 61

Query: 78  AIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
            +G +++VGE V     GD V +      C  C  CR                       
Sbjct: 62  VVGRIDAVGEGVSRWKVGDRVGVGWHGGHCGTCDACR----------------------- 98

Query: 137 SRFKDLRGETIH----HFVSVSS---FSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVST 188
                 RG+ +H        V+    ++EY +     + ++   +    A  L C GV+T
Sbjct: 99  ------RGDFVHCENGKVTGVTRDGGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTT 152

Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIG-LAV 217
               A R +  + G  V + G+G +G LAV
Sbjct: 153 --FNALRNSGAKPGDLVAVQGIGGLGHLAV 180

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family

 Score = 71.8 bits (176), Expect = 1e-14
 Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 36/227 (15%)

Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM-KD----FPAV--FPRILGHEAIGV 81
           L +++V V      E+ +R+    +C SD+  ++  KD    +P +  FP ++GHE  GV
Sbjct: 39  LRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGV 98

Query: 82  VESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKD 141
           VE  G+NV    +GD V    +  C  C  CRS   N C                   K+
Sbjct: 99  VEKTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHC----------------KNLKE 142

Query: 142 LRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV---PPNRACLLSCGVS-TGV---GAAW 194
           L       F +  +F+EY  ++  +  +++        ++A      V  T V   G   
Sbjct: 143 L------GFSADGAFAEYIAVNARYAWEINELREIYSEDKAFEAGALVEPTSVAYNGLFI 196

Query: 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
           R      G+ VV++G G IGLA    A+  GA+++I  ++  E+  +
Sbjct: 197 RGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNL 243

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384

>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional

 Score = 69.1 bits (169), Expect = 1e-13
 Identities = 54/206 (26%), Positives = 82/206 (39%), Gaps = 39/206 (18%)

Query: 43  EVRVRIICTSLCHSDVTFWKMKDFPAVF-------PRILGHEAIGVVESVGENVDGVVEG 95
           +V V++  + LC SD+        P +F       P  LGHE  G VE+VG  VD +  G
Sbjct: 27  DVLVKVASSGLCGSDI--------PRIFKNGAHYYPITLGHEFSGYVEAVGSGVDDLHPG 78

Query: 96  DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSS 155
           D V    L  C  C  C     +LC+ + F           SR                 
Sbjct: 79  DAVACVPLLPCFTCPECLRGFYSLCAKYDFI---------GSR-------------RDGG 116

Query: 156 FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGL 215
            +EY V+   ++  +   +P      +   ++ G+ A       E G  V+I G G+IGL
Sbjct: 117 NAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGLHAFHLAQGCE-GKNVIIIGAGTIGL 174

Query: 216 AVAEGARLCGATRIIGVDVISEKFEI 241
              + A   GA  +  +D+ SEK  +
Sbjct: 175 LAIQCAVALGAKSVTAIDINSEKLAL 200

Length = 347

>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

 Score = 69.2 bits (169), Expect = 1e-13
 Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 22/221 (9%)

Query: 23  TAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV--FPRILGHEAIG 80
           T PG+P+V   V +    + +V V++    +CH+D++++ M         P  LGHE  G
Sbjct: 5   TEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYM-GVRTNHALPLALGHEISG 63

Query: 81  VVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFK 140
            V   G      +   V++P  +  C EC  C++ +G +C            R Q     
Sbjct: 64  RVIQAGAGAASWIGKAVIVPAVIP-CGECELCKTGRGTIC------------RAQKMPGN 110

Query: 141 DLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVE 200
           D++G    H V  +      V+D A +      +P     +++  V+T   AA + A ++
Sbjct: 111 DMQGGFASHIVVPAKG--LCVVDEARLAAAG--LPLEHVSVVADAVTTPYQAAVQ-AGLK 165

Query: 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
            G  V++ G G +G  + + A+  GA  ++ +D+  EK E+
Sbjct: 166 KGDLVIVIGAGGVGGYMVQTAKAMGAA-VVAIDIDPEKLEM 205

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349

>gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional

 Score = 68.6 bits (168), Expect = 2e-13
 Identities = 53/216 (24%), Positives = 90/216 (41%), Gaps = 29/216 (13%)

Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN 88
           L I+E  +  P + EVRV++    +C SD   ++  +  A +PR++GHE  GV+++VGE 
Sbjct: 12  LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEG 71

Query: 89  VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH 148
           VD    G+ V    +  C  C  C   K N+C++    +   + RD              
Sbjct: 72  VDAARIGERVAVDPVISCGHCYPCSIGKPNVCTSL---VVLGVHRD-------------- 114

Query: 149 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEV--GSTVV 206
                  FSEY V+   +  ++   +    A +    V     AA  T           +
Sbjct: 115 -----GGFSEYAVVPAKNAHRIPDAIADQYAVM----VEPFTIAANVTGRTGPTEQDVAL 165

Query: 207 IFGLGSIGLAVAEG-ARLCGATRIIGVDVISEKFEI 241
           I+G G +GL + +    +     +I  D I E+  +
Sbjct: 166 IYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLAL 201

Length = 339

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 60/227 (26%), Positives = 98/227 (43%), Gaps = 29/227 (12%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +AA+        V+ E  + P    E  V++    +CH+D+      DF     RILGHE
Sbjct: 2   KAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHV-ANGDFGDKTGRILGHE 60

Query: 78  AIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
            IG+V+ VG  V  +  GD V I  F   C  C  C + +  LC                
Sbjct: 61  GIGIVKEVGPGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRETLC---------------- 104

Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAAWR 195
            R     G T+         +E  ++   + VKV   + P +A  ++C GV+T    A +
Sbjct: 105 -RSVKNAGYTVD-----GGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTT--YKAIK 156

Query: 196 TANVEVGSTVVIFGLGSIG-LAVAEGARLCGATRIIGVDVISEKFEI 241
            + ++ G  + I+G G +G LA+     +  A ++I VD+  +K  +
Sbjct: 157 VSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLAL 202

Length = 338

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 65.7 bits (161), Expect = 1e-12
 Identities = 46/226 (20%), Positives = 69/226 (30%), Gaps = 65/226 (28%)

Query: 18  RAAIATAPGEPLVIDEV-IVDP-PNSHEVRVRIICTSLCHSDVTF---WKMKDFPAVFPR 72
           +A      G P V++   +  P P   EV V++    +   D+          FP   P 
Sbjct: 2   KAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPL 61

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           I GH+  GVV +VG  V G   GD V                                  
Sbjct: 62  IPGHDVAGVVVAVGPGVTGFKVGDEVF----------------------GMTP------- 92

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 192
                            F    +++EY V+    +      +    A      +      
Sbjct: 93  -----------------FTRGGAYAEYVVVPADELALKPANLSFEEA----AALPLAGLT 131

Query: 193 AWRT----ANVEVGSTVVIFG-LGSIG-----LAVAEGARLCGATR 228
           AW+       ++ G TV+I G  G +G     LA A GAR+     
Sbjct: 132 AWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATAS 177

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 62/238 (26%), Positives = 99/238 (41%), Gaps = 39/238 (16%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDV-------TFWKMKDFPAVF 70
           RA +   P +   ++EV V  P   E+ V++    +C  D+       +FW  ++ P   
Sbjct: 2   RAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYV 60

Query: 71  --PRILGHEAIGVVESVGENVD--GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
             P I GHE +G V  +GE  +  GV  GD VI   +  C  C  C   +  +C      
Sbjct: 61  KPPMIPGHEFVGRVVELGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQK---- 116

Query: 127 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LS 183
                         DL G   +    ++ +  +    I H  KV   +PP  A L   L+
Sbjct: 117 -------------HDLYGFQNNVNGGMAEYMRFPKEAIVH--KVPDDIPPEDAILIEPLA 161

Query: 184 CGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
           C +     A  R AN++    VV+ G G +GL +   ARL    ++I +D+  E+  +
Sbjct: 162 CALH----AVDR-ANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLAL 214

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 9/108 (8%)

Query: 18  RAAIATAPGEPLVIDEVIVDPP---NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           +A +   PG   V D   V  P   +  +  VRI  T++C SD+  ++     A    +L
Sbjct: 2   KAVVYGGPGNVAVED---VPDPKIEHPTDAIVRITTTAICGSDLHMYR-GRTGAEPGLVL 57

Query: 75  GHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCS 121
           GHEA+G VE VG  V+ +  GD VV+P F   C  C  C+     +C 
Sbjct: 58  GHEAMGEVEEVGSAVESLKVGDRVVVP-FNVACGRCRNCKRGLTGVCL 104

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 64/227 (28%), Positives = 97/227 (42%), Gaps = 38/227 (16%)

Query: 18  RAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSD---VTFWKMKDFPAVFPRI 73
           +A +    G E L +++V    P   EV +R+    +   D   +   K+K      P I
Sbjct: 2   KALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVKVK----PMPHI 57

Query: 74  LGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
            G E  GVVE VG++V GV +GD VV+ + + D T C  C S    LC            
Sbjct: 58  PGAEFAGVVEEVGDHVKGVKKGDRVVVYNRVFDGT-CDMCLSGNEMLC------------ 104

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 192
                     R   I   VS   ++EY V+   ++ K+  ++    A  L     T   A
Sbjct: 105 ----------RNGGIIGVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHA 154

Query: 193 AWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK 238
             +TA +  G TVV+FG  G+ G+   + A++ GA  I     +S K
Sbjct: 155 L-KTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVI----AVSRK 196

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 61.8 bits (151), Expect = 3e-11
 Identities = 53/230 (23%), Positives = 79/230 (34%), Gaps = 61/230 (26%)

Query: 18  RAAIATAP-GEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV--FPRIL 74
           +AA+ T P G  LV+ +V V  P   EV V++   +L   D   WK +D+  +  +P IL
Sbjct: 2   KAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVD---WKHQDYGFIPSYPAIL 58

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           G +  G V  VG  V     GD V                + G                 
Sbjct: 59  GCDFAGTVVEVGSGVTRFKVGDRV----AGFVHGGNPNDPRNG----------------- 97

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST------ 188
                               +F EY V D     K+   +    A  L  G+ T      
Sbjct: 98  --------------------AFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALF 137

Query: 189 ---GVGAAWRTAN-VEVGSTVVIFGLGS--IGLAVAEGARLCGATRIIGV 232
              G+       +    G  V+I+G GS  +G    + A+L G  ++I  
Sbjct: 138 QKLGLPLPPPKPSPASKGKPVLIWG-GSSSVGTLAIQLAKLAGY-KVITT 185

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase

 Score = 58.0 bits (141), Expect = 7e-10
 Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 36/165 (21%)

Query: 20  AIATAPGEPLVIDEVIVDP-PNSHEVRVRIICTSLCHSDV--------TFWKMKDFPAVF 70
           AIA  PG+P V    I +P P   EV VR +   +C +D         T    +DF    
Sbjct: 3   AIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDF---- 58

Query: 71  PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
             +LGHEA+GVVE VG+   G+  GD+V+P       +C+ CR  + + C          
Sbjct: 59  -LVLGHEALGVVEEVGDG-SGLSPGDLVVPTVRRPPGKCLNCRIGRPDFCE--------- 107

Query: 131 MPRDQTSRFKDLRGET-IHHFVSVSSFSEYTVLDIAHVVKVDPTV 174
                T  + + RG   +H F       EY V D  ++VKV P++
Sbjct: 108 -----TGEYTE-RGIKGLHGF-----MREYFVDDPEYLVKVPPSL 141

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 355

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 57.3 bits (139), Expect = 7e-10
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 2/87 (2%)

Query: 157 SEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216
           +E  V+    +V +   +PP RA L +   +T +      A   +G  V + GLG +GL 
Sbjct: 55  AERVVVPANLLVPLPDGLPPERAALTALA-ATALNGVRD-AEPRLGERVAVVGLGLVGLL 112

Query: 217 VAEGARLCGATRIIGVDVISEKFEIGE 243
            A+ A+  GA  ++GVD  + + E+ E
Sbjct: 113 AAQLAKAAGAREVVGVDPDAARRELAE 139

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|234025 TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenase, glutathione-independent

 Score = 56.0 bits (135), Expect = 3e-09
 Identities = 65/238 (27%), Positives = 96/238 (40%), Gaps = 36/238 (15%)

Query: 18  RAAIATAPGEPLVIDEVIVDP--------PNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           R  +   PG+  V D  I  P           H V ++++ T++C SD    + +   A 
Sbjct: 4   RGVVYLGPGKVEVQD--IDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRT-TAP 60

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
              +LGHE  G V   G +V+ +  GD+V   F   C  C  C+     +C      ++P
Sbjct: 61  TGLVLGHEITGEVIEKGRDVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVC----LNVNP 116

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR---------AC 180
                    + D+ G        V   SEY ++  A     +    P+R           
Sbjct: 117 ARA-GAAYGYVDMGG-------WVGGQSEYVMVPYA---DFNLLKFPDRDQALEKIRDLT 165

Query: 181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 238
           +LS    TG   A  TA V  GSTV I G G +GLA A  A+L GA  +I  D+   +
Sbjct: 166 MLSDIFPTGYHGAV-TAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPAR 222

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent [Central intermediary metabolism, One-carbon metabolism]. Length = 393

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 55.7 bits (135), Expect = 4e-09
 Identities = 51/222 (22%), Positives = 74/222 (33%), Gaps = 69/222 (31%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDV-----TFWKMKDFPAVF 70
           R  + T  G P  L + E  +  P + EV V++  + +  +DV      +      P   
Sbjct: 2   REVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFT- 60

Query: 71  PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           P   G++ +G V+++G  V G   GD V                                
Sbjct: 61  P---GYDLVGRVDALGSGVTGFEVGDRVAA------------------------------ 87

Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
                                 V   +EY  LD  ++V V   V    A    C V   V
Sbjct: 88  -------------------LTRVGGNAEYINLDAKYLVPVPEGVDAAEA---VCLVLNYV 125

Query: 191 GAAW----RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGAT 227
             A+    R A V  G  V+I G  G +G A+ E A L GA 
Sbjct: 126 -TAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGAE 166

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 55.3 bits (134), Expect = 5e-09
 Identities = 57/217 (26%), Positives = 81/217 (37%), Gaps = 50/217 (23%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF--PAVFPRI 73
           RA      G P  L I+E+ V  P + EV +R+    L  +D   ++   +  P   P  
Sbjct: 2   RAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADA-MFRRGAYIEPPPLPAR 60

Query: 74  LGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR 133
           LG+EA GVVE+VG  V G   GD V                            + P    
Sbjct: 61  LGYEAAGVVEAVGAGVTGFAVGDRVS---------------------------VIPAADL 93

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAA 193
            Q                   +++EY ++  A VVK+   +    A  L     T  GA 
Sbjct: 94  GQ-----------------YGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGAL 136

Query: 194 WRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRI 229
              A +  G +V+I     S+GLA  + A   GAT I
Sbjct: 137 VELAGLRPGDSVLITAASSSVGLAAIQIANAAGATVI 173

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 54.5 bits (132), Expect = 8e-09
 Identities = 57/243 (23%), Positives = 80/243 (32%), Gaps = 81/243 (33%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV-FPRIL 74
           +A +  + G P    + EV    P   +V VR+  + +   D    +         P IL
Sbjct: 2   KALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAIL 61

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           G +  GVVE+VGE V     GD V            GC                      
Sbjct: 62  GCDVAGVVEAVGEGVTRFRVGDEVY-----------GC---------------------- 88

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLD---IAHVVKVDPTVPPNRACLLSCGVSTGVG 191
                  L+G          S +EY V+D   +A         P N +   +  +     
Sbjct: 89  -AGGLGGLQG----------SLAEYAVVDARLLAL-------KPANLSMREAAALPLVGI 130

Query: 192 AAW----RTANVEVGSTVVIF----GLGSIG--LAVAEGARLC--------------GAT 227
            AW      A V+ G TV+I     G+G +   LA A GAR+               GA 
Sbjct: 131 TAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATASSEKAAFARSLGAD 190

Query: 228 RII 230
            II
Sbjct: 191 PII 193

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score = 53.3 bits (129), Expect = 2e-08
 Identities = 52/222 (23%), Positives = 81/222 (36%), Gaps = 60/222 (27%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF----WKMKDFPAVFP 71
           +A +    G P  LV++EV  +P    EVR+R+    +   D+      +++K  P + P
Sbjct: 2   KAVVCKELGGPEDLVLEEVPPEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVK--PPL-P 58

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
            + G E  GVVE+VGE V G                                        
Sbjct: 59  FVPGSEVAGVVEAVGEGVTGFKV------------------------------------- 81

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG 191
                       G+ +        F+E  V+  A V  +   +    A  L     T   
Sbjct: 82  ------------GDRVVALTGQGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYH 129

Query: 192 AAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV 232
           A  R A ++ G TV++ G  G +GLA  + A+  GA R+I  
Sbjct: 130 ALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAA 170

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 49/217 (22%), Positives = 79/217 (36%), Gaps = 55/217 (25%)

Query: 17  CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV---FP 71
            +A +   PG    L ++E+ +  P + EV V++    L   D   WK+  +      +P
Sbjct: 1   MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVD---WKVIAWGPPAWSYP 57

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
            + G +  GVV +VG  V G   GD V  H                              
Sbjct: 58  HVPGVDGAGVVVAVGAKVTGWKVGDRVAYH------------------------------ 87

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG 191
                S  +              SF+EYTV+D   V+ +  ++    A  L C   T   
Sbjct: 88  ----ASLARG------------GSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQ 131

Query: 192 AAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGAT 227
           A ++   +E G T++I G  G +G    + A+  G  
Sbjct: 132 ALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGLR 168

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 51.8 bits (125), Expect = 8e-08
 Identities = 53/226 (23%), Positives = 80/226 (35%), Gaps = 51/226 (22%)

Query: 18  RAAIATAPG--EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD----FPAVFP 71
           +A   +  G  + L + E  V  P   EV VR+   SL + D+    + +     P   P
Sbjct: 2   KAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLL---ILNGRYPPPVKDP 58

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
            I   +  G V +VGE V     GD V+P F  +                        W+
Sbjct: 59  LIPLSDGAGEVVAVGEGVTRFKVGDRVVPTFFPN------------------------WL 94

Query: 132 --PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVST 188
             P         L G  I         +EY VL    +V+    +    A  L C G++ 
Sbjct: 95  DGPPTAEDEASALGG-PIDGV-----LAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLT- 147

Query: 189 GVGAAWR----TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRII 230
               AW        ++ G TV++ G G + L   + A+  GA  I 
Sbjct: 148 ----AWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGARVIA 189

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 51.7 bits (125), Expect = 9e-08
 Identities = 54/230 (23%), Positives = 79/230 (34%), Gaps = 78/230 (33%)

Query: 18  RAAIATAPGEPLVI--DEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILG 75
           +A      G P V+  ++V V  P   EV VR     +   D  F +   +P   P +LG
Sbjct: 1   KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYF-RSGLYPLPLPFVLG 59

Query: 76  HEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
            E  GVVE+VG  V G   GD V                       A P           
Sbjct: 60  VEGAGVVEAVGPGVTGFKVGDRV---------------------AYAGPP---------- 88

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW- 194
                              +++EY V+  + +VK    +P         G+S    AA  
Sbjct: 89  ------------------GAYAEYRVVPASRLVK----LPD--------GISDETAAALL 118

Query: 195 -----------RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV 232
                       T  V+ G TV++    G +GL + + A+  GA  +IG 
Sbjct: 119 LQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGA-TVIGT 167

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 50/231 (21%), Positives = 81/231 (35%), Gaps = 54/231 (23%)

Query: 18  RAAIATAPGEPLVIDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWK----MKDFPAVFPR 72
           RAA+      PLV+ + + DP P   +V V+++   +C SD+        M D       
Sbjct: 2   RAAVFR--DGPLVVRD-VPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSL 58

Query: 73  -------ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPF 125
                  +LGHE  G V   G   +                      + K G   ++ P 
Sbjct: 59  MDLGADIVLGHEFCGEVVDYGPGTER---------------------KLKVGTRVTSLPL 97

Query: 126 KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---L 182
            +             +  G           ++EY +L  A +++V   +    A L   L
Sbjct: 98  LLCGQGASCGIGLSPEAPG----------GYAEYMLLSEALLLRVPDGLSMEDAALTEPL 147

Query: 183 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 233
           + G+      A R A +  G   ++ G G IGLAV    +  G   I+  D
Sbjct: 148 AVGLH-----AVRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASD 193

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 47/219 (21%), Positives = 77/219 (35%), Gaps = 53/219 (24%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILG 75
           +A +   PG P  L + E+ +  P    V +R+    L  S++   +       FPR+LG
Sbjct: 2   KAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLG 61

Query: 76  HEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
            EA+G VE           G  V               +  G +   F            
Sbjct: 62  IEAVGEVEEAPGG--TFTPGQRVA--------------TAMGGMGRTFD----------- 94

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
                              S++EYT++    V  +D  +       L     T  G+ +R
Sbjct: 95  ------------------GSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFR 136

Query: 196 TANVEVGSTVVI------FGLGSIGLAVAEGARLCGATR 228
           +  ++ G T++I       GL ++ LA A GA +   TR
Sbjct: 137 SLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTR 175

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 17  CRAAIATAPGEPL----VIDEVIVDPPNSHEVRVRIICTSLCHSDV-----TFWKMKDFP 67
            +A + T  GEP     +    I  P   +EV V+++   +  +D+      +       
Sbjct: 1   AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTT 60

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPH 101
              P + G+E +G V  VG  V  +  GD VIP 
Sbjct: 61  PEPPAVGGNEGVGEVVKVGSGVKSLKPGDWVIPL 94

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|176252 cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 8/87 (9%)

Query: 18 RAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFP 71
          RAA+ T  G+P   L I EV    P + EV VR   + + + D+  W ++    +    P
Sbjct: 2  RAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDL--WTIRGTYGYKPELP 59

Query: 72 RILGHEAIGVVESVGENVDGVVEGDVV 98
           I G EA+GVV++VGE V G+  G  V
Sbjct: 60 AIGGSEAVGVVDAVGEGVKGLQVGQRV 86

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase

 Score = 50.4 bits (120), Expect = 2e-07
 Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 19/176 (10%)

Query: 42  HEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVV-IP 100
           ++V V+I+   +CHSD+   K     + +P I GHE +G+   VG+NV    EGD V + 
Sbjct: 32  NDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVG 91

Query: 101 HFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKD-LRGETIHHFVSVSSFSEY 159
             +  C  C  C     N C    F  +        SR  D  R +          +S+ 
Sbjct: 92  VIIGSCQSCESCNQDLENYCPKVVFTYN--------SRSSDGTRNQ--------GGYSDV 135

Query: 160 TVLDIAHVVKVDPTVPPNR-ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIG 214
            V+D   V+ +   +P +  A LL  G++      +     E G  + + GLG +G
Sbjct: 136 IVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLG 191

Length = 375

>gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism associated alcohol dehydrogenase

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 40/178 (22%), Positives = 61/178 (34%), Gaps = 23/178 (12%)

Query: 73  ILGHEAIGVVESVGENVDGVVE------GDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
           +LGHE +G V ++        +      G  V+      C  C  CR      C      
Sbjct: 1   VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCD----- 55

Query: 127 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA-HVVKVDPTVPPNRACLLSCG 185
                     S  K         +     ++E+  L     +V V   +P   A    C 
Sbjct: 56  ----------SLRKYGHEALDSGWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCA 105

Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
            +T V AA   A    G  V++ G G +GL  A  A   GA R++  D   ++ E+  
Sbjct: 106 TAT-VMAALEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELAL 162

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Length = 280

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 20  AIATAPGEP----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM--KDFPAVFPRI 73
            + T  GEP    L +  + + PP   EV VR++   +  SD+          P   P +
Sbjct: 1   VVYTQFGEPLPLVLELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPP-LPAV 59

Query: 74  LGHEAIGVVESVGENVDGVVEGDVVIP 100
            G+E +GVV  VG  V G++ G  V+P
Sbjct: 60  PGNEGVGVVVEVGSGVSGLLVGQRVLP 86

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 49.5 bits (119), Expect = 4e-07
 Identities = 46/216 (21%), Positives = 67/216 (31%), Gaps = 59/216 (27%)

Query: 20  AIATAPGEPLVIDEVIVD----PPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV---FPR 72
            + T  G P V+  + V+     P   EV V++   S+   D    +      +   FP 
Sbjct: 1   VVYTRYGSPEVLLLLEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPP 60

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           I G +  G V +VG  V     GD V            G    KG               
Sbjct: 61  IPGMDFAGEVVAVGSGVTRFKVGDEVF-----------GRLPPKG--------------- 94

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 192
                      G          + +EY V   + + K    V    A  L     T + A
Sbjct: 95  ----------GG----------ALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQA 134

Query: 193 AWRTANVEVGSTVVIFG----LGSIG--LAVAEGAR 222
                 V+ G  V+I G    +G+    +A A GA 
Sbjct: 135 LRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGAH 170

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 47/198 (23%), Positives = 78/198 (39%), Gaps = 24/198 (12%)

Query: 40  NSHEVRVRIICTSLCHSDVTFW---KMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96
           N++   V+I    +C SD+ ++   K+ +F    P +LGHE IG +     +  G+ EG 
Sbjct: 26  NNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSSGLKEGQ 83

Query: 97  VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSF 156
            V  +    C  C  C S   N C+   F  S          F  + G           F
Sbjct: 84  TVAINPSKPCGHCKYCLSHNENQCTTMRFFGS-------AMYFPHVDG----------GF 126

Query: 157 SEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216
           + Y V+D A  +              +  ++  + AA +  ++  G  V + G+G IG  
Sbjct: 127 TRYKVVDTAQCIPYPEKADEKVMA-FAEPLAVAIHAAHQAGDL-QGKRVFVSGVGPIGCL 184

Query: 217 VAEGARLCGATRIIGVDV 234
           +    +  GA  I+  DV
Sbjct: 185 IVAAVKTLGAAEIVCADV 202

Length = 343

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score = 49.0 bits (117), Expect = 7e-07
 Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 28/174 (16%)

Query: 43  EVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVV-IPH 101
           +V +++I   +CH+D+   K     + +P + GHE +G V  VG +V     GD+V +  
Sbjct: 36  DVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGV 95

Query: 102 FLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTV 161
            +  C EC  C+S     C+    +I  W   D  +  K  +G           F+   V
Sbjct: 96  IVGCCGECSPCKSDLEQYCNK---RI--WSYNDVYTDGKPTQG----------GFASAMV 140

Query: 162 LDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGL 215
           +D   VVK+   + P +A  L C            A V V S +  FGL   GL
Sbjct: 141 VDQKFVVKIPEGMAPEQAAPLLC------------AGVTVYSPLSHFGLKQSGL 182

Length = 357

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 20/52 (38%), Positives = 29/52 (55%)

Query: 192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
                A V+ G TV +FG G +GL  A  A L GA+R+  VD + E+ ++ E
Sbjct: 167 HGLELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAE 218

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 16/173 (9%)

Query: 43  EVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVV-IPH 101
           +V V+I+   +CHSD+   K +     +P + GHE +G+V  +G+NV    EGD V +  
Sbjct: 39  DVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTKLGKNVKKFKEGDRVGVGV 98

Query: 102 FLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTV 161
            +  C  C  C     N C    F  +  +  D T  +                +S+  V
Sbjct: 99  IVGSCKSCESCDQDLENYCPKMIFTYNS-IGHDGTKNY--------------GGYSDMIV 143

Query: 162 LDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIG 214
           +D   V++    +P +    L C   T           E G  + + GLG +G
Sbjct: 144 VDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLG 196

Length = 360

>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 17/108 (15%)

Query: 18  RAAIATAPGEPLVIDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWK--MKDFPAVFPRIL 74
           +A +     +  V D  +  P P   E  VR++   +C++D+  +K         FP + 
Sbjct: 2   KALVLDGGLDLRVED--LPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP-----FPGVP 54

Query: 75  GHEAIGVVESVGEN--VDGVVEGDVVIPHFLADCTECVGCRSKKGNLC 120
           GHE +G+VE   E   V   V G++ I      C  C  CR      C
Sbjct: 55  GHEFVGIVEEGPEAELVGKRVVGEINIA-----CGRCEYCRRGLYTHC 97

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 40/170 (23%), Positives = 59/170 (34%), Gaps = 32/170 (18%)

Query: 61  WKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC 120
                    FPRI G + +G V +VGE VD    G+ V+                     
Sbjct: 68  AGWWGGTLSFPRIQGADIVGRVVAVGEGVDTARIGERVL--------------------- 106

Query: 121 SAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRAC 180
                 + P +         D+    I        F+EYTV+   +   V+  +      
Sbjct: 107 ------VDPSIRDPPEDDPADID--YIGSERD-GGFAEYTVVPAENAYPVNSPLSDVELA 157

Query: 181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRI 229
              C  ST      R A V  G TV++ G  G +G A+ + A+  GA  I
Sbjct: 158 TFPCSYSTAENMLER-AGVGAGETVLVTGASGGVGSALVQLAKRRGAIVI 206

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 54/234 (23%), Positives = 86/234 (36%), Gaps = 61/234 (26%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILG 75
           RA      G P  L + ++ V  P   EV VR+  + +   D                + 
Sbjct: 2   RAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVP 61

Query: 76  H-EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
             +  GVVE+VGE VDG+  GD V   +L +    +G   ++G                 
Sbjct: 62  GSDGAGVVEAVGEGVDGLKVGDRV---WLTN----LGWGRRQG----------------- 97

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA-- 192
                               + +EY V+    +V +   V          G + G+ A  
Sbjct: 98  --------------------TAAEYVVVPADQLVPLPDGVSF------EQGAALGIPALT 131

Query: 193 AWRT----ANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
           A+R     A  + G TV++ G  G++G A  + AR  GA R+I     +E  E+
Sbjct: 132 AYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAEL 184

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 10/82 (12%)

Query: 18 RAAIATAPGEPLVIDEVIVDP-----PNSHEVRVRIICTSLCHSDVTFWKMK---DFPAV 69
          +A +    G+PL + E+ +       P   EV +++    +  SD+ F  +K        
Sbjct: 2  KALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGF--LKGQYGSTKA 59

Query: 70 FPRILGHEAIGVVESVGENVDG 91
           P   G E  G V + G     
Sbjct: 60 LPVPPGFEGSGTVVAAGGGPLA 81

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176200 cd08238, sorbose_phosphate_red, L-sorbose-1-phosphate reductase

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 38 PPNSHEVRVRIICTSLCHSDVTFWKM-KDFPAVF------PRILGHEAIGVVESVGENVD 90
               E+ VR+I  SLC S         D   V       P ILGHE  G +  VG+   
Sbjct: 23 EIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGKKWQ 82

Query: 91 G 91
          G
Sbjct: 83 G 83

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 410

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGV 232
           G TV+I GLG IG  +A  A+  G  R+IGV
Sbjct: 134 GKTVLIVGLGDIGREIARRAKAFGM-RVIGV 163

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 9/88 (10%)

Query: 18 RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPR--- 72
          RA      G    L I E     P  ++V +++    +  +D    + K  P   P    
Sbjct: 3  RAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPP---PPGSS 59

Query: 73 -ILGHEAIGVVESVGENVDGVVEGDVVI 99
           ILG E  G VE VG +V    EGD V+
Sbjct: 60 EILGLEVAGYVEDVGSDVKRFKEGDRVM 87

Length = 334

>gnl|CDD|131869 TIGR02822, adh_fam_2, zinc-binding alcohol dehydrogenase family protein

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 33/97 (34%), Positives = 42/97 (43%), Gaps = 3/97 (3%)

Query: 28  PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL-GHEAIGVVESVG 86
           PL   E  V  P   E+ VR+    +C +D+   +  D P   PR+  GHE +G V   G
Sbjct: 14  PLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSE-GDLPVHRPRVTPGHEVVGEVAGRG 72

Query: 87  ENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSA 122
            +  G   GD V I      C  C  CR    NLC A
Sbjct: 73  ADAGGFAVGDRVGIAWLRRTCGVCRYCRRGAENLCPA 109

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized [Energy metabolism, Fermentation]. Length = 329

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 18 RAAIATAPGEP--LVIDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWKMK-DFPAVFPRI 73
          +A +   PG P  L + EV   P P   EV +R+    +  +D+   +     P     I
Sbjct: 2  KAIVIKEPGGPEVLELGEV-PKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDI 60

Query: 74 LGHEAIGVVESVGENVDGVVEGDVV 98
          LG E  GVV +VG  V G   GD V
Sbjct: 61 LGLEVAGVVVAVGPGVTGWKVGDRV 85

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 31 IDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV 89
          ID  +  P P   ++ VR+   S+   D             P+ILG +A GVVE+VG  V
Sbjct: 19 IDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPKILGWDASGVVEAVGSEV 78

Query: 90 DGVVEGDVV 98
               GD V
Sbjct: 79 TLFKVGDEV 87

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	100.0
PLN02740	381	Alcohol dehydrogenase-like	100.0
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	100.0
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	100.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	100.0
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	100.0
PLN02827	378	Alcohol dehydrogenase-like	100.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	100.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	100.0
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	100.0
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	100.0
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	100.0
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
PLN02514	357	cinnamyl-alcohol dehydrogenase	100.0
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	100.0
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	100.0
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	100.0
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	100.0
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	100.0
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	100.0
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	100.0
PRK10083	339	putative oxidoreductase; Provisional	100.0
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	99.98
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	99.98
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	99.97
PRK13771	334	putative alcohol dehydrogenase; Provisional	99.97
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	99.97
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	99.97
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	99.97
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	99.97
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	99.97
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	99.97
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.97
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	99.97
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	99.97
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	99.97
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.97
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	99.97
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	99.97
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	99.97
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	99.97
PLN02702	364	L-idonate 5-dehydrogenase	99.97
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	99.97
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	99.97
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.96
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	99.96
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	99.96
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.96
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.96
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.96
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	99.96
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.96
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.96
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.96
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.96
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.96
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	99.96
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	99.96
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.96
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.96
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	99.95
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.95
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.95
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	99.95
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.95
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.95
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	99.95
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	99.95
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.95
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	99.94
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	99.94
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	99.94
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.94
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	99.94
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	99.93
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.93
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.93
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	99.93
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.93
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	99.93
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.93
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.93
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.93
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.93
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.93
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.93
PTZ00354	334	alcohol dehydrogenase; Provisional	99.93
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.92
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.92
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.92
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.92
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.92
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.91
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.91
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.91
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.91
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.91
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.9
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.9
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.9
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.9
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.89
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.89
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.89
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.88
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	99.87
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.87
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.87
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.87
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.85
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.85
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.83
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.82
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.73
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.65
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.47
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.43
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.35
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.19
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	96.92
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.84
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.64
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.61
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	96.31
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.29
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	95.93
PLN02494	477	adenosylhomocysteinase	95.87
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.7
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	95.46
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	95.32
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	95.31
PRK08324	681	short chain dehydrogenase; Validated	95.18
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	95.1
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	95.04
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.01
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	94.9
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	94.89
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	94.83
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	94.8
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	94.78
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	94.64
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	94.61
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	94.5
PTZ00075	476	Adenosylhomocysteinase; Provisional	94.27
PRK12548	289	shikimate 5-dehydrogenase; Provisional	93.94
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	93.93
PLN03209	576	translocon at the inner envelope of chloroplast su	93.7
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	93.65
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	93.46
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	93.39
PRK05866	293	short chain dehydrogenase; Provisional	93.3
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	93.17
PRK13940	414	glutamyl-tRNA reductase; Provisional	93.16
PRK04148	134	hypothetical protein; Provisional	93.12
PRK06196	315	oxidoreductase; Provisional	92.83
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	92.71
PLN02780	320	ketoreductase/ oxidoreductase	92.68
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	92.62
PF13823	23	ADH_N_assoc: Alcohol dehydrogenase GroES-associate	91.97
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	91.49
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	91.39
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	91.07
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	90.84
PLN02928	347	oxidoreductase family protein	90.75
PLN00203	519	glutamyl-tRNA reductase	90.65
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	90.45
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	90.44
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	90.24
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	89.89
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	89.89
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	89.88
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	89.55
PRK13243	333	glyoxylate reductase; Reviewed	89.43
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	89.39
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	89.2
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	89.17
PRK06720	169	hypothetical protein; Provisional	88.91
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	88.91
PRK08328	231	hypothetical protein; Provisional	88.8
PRK06484	520	short chain dehydrogenase; Validated	88.79
PRK06932	314	glycerate dehydrogenase; Provisional	88.71
PRK06487	317	glycerate dehydrogenase; Provisional	88.57
PRK06719	157	precorrin-2 dehydrogenase; Validated	88.51
PRK06436	303	glycerate dehydrogenase; Provisional	88.5
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	88.46
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	88.36
PRK12480	330	D-lactate dehydrogenase; Provisional	88.34
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	88.28
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	88.09
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	88.05
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	87.99
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	87.96
PRK14031	444	glutamate dehydrogenase; Provisional	87.9
PRK14982	340	acyl-ACP reductase; Provisional	87.9
PRK12831	464	putative oxidoreductase; Provisional	87.84
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	87.82
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	87.71
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	87.55
PRK06701	290	short chain dehydrogenase; Provisional	87.44
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	87.44
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	87.37
PRK07985	294	oxidoreductase; Provisional	87.35
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	87.29
PRK12814	652	putative NADPH-dependent glutamate synthase small	87.28
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	87.23
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	87.12
PLN02686	367	cinnamoyl-CoA reductase	87.09
PRK06128	300	oxidoreductase; Provisional	87.03
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	87.02
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	86.88
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	86.65
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	86.55
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	86.36
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	86.28
PRK07574	385	formate dehydrogenase; Provisional	86.27
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	86.24
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	86.17
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	86.06
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	86.04
KOG1208	314	consensus Dehydrogenases with different specificit	85.95
PRK14030	445	glutamate dehydrogenase; Provisional	85.78
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	85.65
PRK07201	657	short chain dehydrogenase; Provisional	85.63
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	85.56
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	85.47
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	85.45
PRK12779	944	putative bifunctional glutamate synthase subunit b	85.43
PF00289	110	CPSase_L_chain: Carbamoyl-phosphate synthase L cha	85.4
PLN03139	386	formate dehydrogenase; Provisional	85.32
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	85.26
PRK08223	287	hypothetical protein; Validated	85.07
PRK13984	604	putative oxidoreductase; Provisional	84.94
PRK05855	582	short chain dehydrogenase; Validated	84.93
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	84.85
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	84.82
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	84.79
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	84.59
PLN02695	370	GDP-D-mannose-3',5'-epimerase	84.53
PLN02306	386	hydroxypyruvate reductase	84.41
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	84.33
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	84.32
PLN02477	410	glutamate dehydrogenase	84.29
PRK09414	445	glutamate dehydrogenase; Provisional	84.25
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	84.17
PRK15116	268	sulfur acceptor protein CsdL; Provisional	84.04
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	84.03
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	83.78
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	83.78
PRK14967	223	putative methyltransferase; Provisional	83.73
PRK06567	1028	putative bifunctional glutamate synthase subunit b	83.69
PRK08132	547	FAD-dependent oxidoreductase; Provisional	83.69
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	83.62
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	83.57
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	83.42
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	83.34
PLN02572	442	UDP-sulfoquinovose synthase	83.19
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	83.15
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	82.65
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	82.65
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	82.6
PLN02206	442	UDP-glucuronate decarboxylase	82.4
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	82.34
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	82.29
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	82.12
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	82.09
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	82.06
PTZ00188	506	adrenodoxin reductase; Provisional	81.91
PRK08605	332	D-lactate dehydrogenase; Validated	81.9
COG0281	432	SfcA Malic enzyme [Energy production and conversio	81.72
PRK08294	634	phenol 2-monooxygenase; Provisional	81.66
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	81.64
PRK07340	304	ornithine cyclodeaminase; Validated	81.58
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	81.37
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	81.3
PRK06141	314	ornithine cyclodeaminase; Validated	81.09
PLN02166	436	dTDP-glucose 4,6-dehydratase	81.03
PRK06153	393	hypothetical protein; Provisional	80.94
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	80.94
PLN02852	491	ferredoxin-NADP+ reductase	80.85
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	80.71
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	80.52
PRK10669	558	putative cation:proton antiport protein; Provision	80.46
PRK08618	325	ornithine cyclodeaminase; Validated	80.23
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	80.16
PRK07411	390	hypothetical protein; Validated	80.1
PRK12831	464	putative oxidoreductase; Provisional	80.02

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=2.2e-49  Score=346.44  Aligned_cols=206  Identities=33%  Similarity=0.477  Sum_probs=194.7

Q ss_pred             CceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccC
Q 026140           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVV   93 (243)
Q Consensus        14 ~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~   93 (243)
                      +++|||+++.++++++++.|++.|.|+++||||||+|+|||++|++.++|.++...+|+++|||++|+|+++|++|++|+
T Consensus         1 ~~~mkA~~~~~~~~pl~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~~~P~ipGHEivG~V~~vG~~V~~~k   80 (339)
T COG1064           1 MMTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIPGHEIVGTVVEVGEGVTGLK   80 (339)
T ss_pred             CcceEEEEEccCCCCceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCCCCCCccCCcceEEEEEEecCCCccCC
Confidence            46899999999999999999999999999999999999999999999999999988999999999999999999999999


Q ss_pred             CCCEEEe-eccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCC
Q 026140           94 EGDVVIP-HFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (243)
Q Consensus        94 ~Gd~Vv~-~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~  172 (243)
                      +||||.+ +...+|++|.||+++++++|+.-..   .|+..+|                   +|+||+++++.+++++|+
T Consensus        81 ~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~---~gy~~~G-------------------Gyaeyv~v~~~~~~~iP~  138 (339)
T COG1064          81 VGDRVGVGWLVISCGECEYCRSGNENLCPNQKI---TGYTTDG-------------------GYAEYVVVPARYVVKIPE  138 (339)
T ss_pred             CCCEEEecCccCCCCCCccccCcccccCCCccc---cceeecC-------------------cceeEEEEchHHeEECCC
Confidence            9999977 9999999999999999999998664   5555665                   999999999999999999


Q ss_pred             CCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcCC
Q 026140          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE  243 (243)
Q Consensus       173 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~~  243 (243)
                      ++++++||.+.|...|.|+++. ..++++|++|+|.|+|++|++++|+|+++|+ +|++++++++|+++++
T Consensus       139 ~~d~~~aApllCaGiT~y~alk-~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~  207 (339)
T COG1064         139 GLDLAEAAPLLCAGITTYRALK-KANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAK  207 (339)
T ss_pred             CCChhhhhhhhcCeeeEeeehh-hcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHH
Confidence            9999999999999999999864 5999999999999999999999999999998 9999999999998763

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=2e-46  Score=322.93  Aligned_cols=227  Identities=46%  Similarity=0.766  Sum_probs=220.5

Q ss_pred             ceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCC
Q 026140           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (243)
Q Consensus        15 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~   94 (243)
                      |++||+++.++++||.++|+.+++|+++|||||+.++++|++|...++|..+.. +|.++|||++|+|++||++|+.+++
T Consensus         1 mk~~aAV~~~~~~Pl~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~~-~P~vLGHEgAGiVe~VG~gVt~vkp   79 (366)
T COG1062           1 MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEG-FPAVLGHEGAGIVEAVGEGVTSVKP   79 (366)
T ss_pred             CCceEeeeecCCCCeEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCCC-CceecccccccEEEEecCCccccCC
Confidence            578999999999999999999999999999999999999999999999998886 9999999999999999999999999


Q ss_pred             CCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC
Q 026140           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (243)
Q Consensus        95 Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~  174 (243)
                      ||.|+.....+|++|.+|+++..++|+.++.+...|...+|+.|+. .++.+.+|+.|.++|++|.+++..++++++++.
T Consensus        80 GDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls-~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~  158 (366)
T COG1062          80 GDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLS-GNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDA  158 (366)
T ss_pred             CCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeee-cCCcceeeeeccccchhheeecccceEECCCCC
Confidence            9999999999999999999999999999999999999999999999 888999999999999999999999999999999


Q ss_pred             ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcCC
Q 026140          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE  243 (243)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~~  243 (243)
                      +++.++++.|...|.+.++.+.+++++|++|.|+|-|++|++++|-|+..|+.++|+++.+++|+++++
T Consensus       159 p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~  227 (366)
T COG1062         159 PLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAK  227 (366)
T ss_pred             CccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999874

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1e-45  Score=314.49  Aligned_cols=232  Identities=56%  Similarity=0.945  Sum_probs=221.6

Q ss_pred             CCCCceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCC
Q 026140           11 AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD   90 (243)
Q Consensus        11 ~~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~   90 (243)
                      ..++.++||++..++++||.++|+..++|+.+||+||++++++|++|...++|..+...+|.++|||.+|+|+++|.+|+
T Consensus         2 ~gkvI~CKAAV~w~a~~PL~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~~~fP~IlGHEaaGIVESvGegV~   81 (375)
T KOG0022|consen    2 AGKVITCKAAVAWEAGKPLVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPEGLFPVILGHEAAGIVESVGEGVT   81 (375)
T ss_pred             CCCceEEeEeeeccCCCCeeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCccccCceEecccceeEEEEecCCcc
Confidence            45678999999999999999999999999999999999999999999999999887788999999999999999999999


Q ss_pred             ccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCC-CCCCCCCccccccCCceeecccccceeeeeEEeccCcEEE
Q 026140           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP-WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (243)
Q Consensus        91 ~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~-g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~  169 (243)
                      +|++||+|+......|++|.+|+++..|+|++++.+... ++..||+.|+. .+|.+.|||.+..+|+||.+++...+++
T Consensus        82 ~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~-~~gk~iyHfmg~StFsEYTVv~~~~v~k  160 (375)
T KOG0022|consen   82 TVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFT-CKGKPIYHFMGTSTFSEYTVVDDISVAK  160 (375)
T ss_pred             ccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeee-eCCCceEEecccccceeEEEeecceeEe
Confidence            999999999999999999999999999999999988544 44569999999 8999999999999999999999999999


Q ss_pred             cCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcCC
Q 026140          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE  243 (243)
Q Consensus       170 ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~~  243 (243)
                      |++..+.+.++++.|.+.|+|.|+++.+++++|+++.|+|-|.+|+++++-||+.|+.++|++|.+++|.+.+|
T Consensus       161 Id~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak  234 (375)
T KOG0022|consen  161 IDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAK  234 (375)
T ss_pred             cCCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988764

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.1e-43  Score=301.44  Aligned_cols=212  Identities=29%  Similarity=0.428  Sum_probs=192.9

Q ss_pred             CCCceeeeEEeccCCC--CeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCC
Q 026140           12 GKPIQCRAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (243)
Q Consensus        12 ~~~~~~ka~~~~~~~~--~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v   89 (243)
                      ..|.+.++|.+..++.  ++++++++.|+|+++||+|+|+|+|||++|++.+.++++...+|.|+|||++|+|+++|++|
T Consensus         5 ~~p~k~~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~s~~PlV~GHEiaG~VvkvGs~V   84 (360)
T KOG0023|consen    5 SIPEKQFGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGLSKYPLVPGHEIAGVVVKVGSNV   84 (360)
T ss_pred             cCchhhEEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCcccCCccCCceeeEEEEEECCCc
Confidence            3467899999999998  46669999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCEE-EeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEE
Q 026140           90 DGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV  168 (243)
Q Consensus        90 ~~~~~Gd~V-v~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~  168 (243)
                      ++|++||+| +-....+|..|.+|.++.++||+....+ +.|...||              ....|+|++|+++++.+++
T Consensus        85 ~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t-~~g~~~DG--------------t~~~ggf~~~~~v~~~~a~  149 (360)
T KOG0023|consen   85 TGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFT-YNGVYHDG--------------TITQGGFQEYAVVDEVFAI  149 (360)
T ss_pred             ccccccCeeeeeEEeccccCccccccCCcccCCceeEe-ccccccCC--------------CCccCccceeEEEeeeeEE
Confidence            999999999 7788899999999999999999975443 57777777              3334589999999999999


Q ss_pred             EcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       169 ~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      +||++++.+.||.+.|+..|.|++| ...++.||+++.|.|+|++|++++|+|++||. +|+++++++.+.+
T Consensus       150 kIP~~~pl~~aAPlLCaGITvYspL-k~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~kke  219 (360)
T KOG0023|consen  150 KIPENLPLASAAPLLCAGITVYSPL-KRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSKKKE  219 (360)
T ss_pred             ECCCCCChhhccchhhcceEEeehh-HHcCCCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCchhHH
Confidence            9999999999999999999999975 56788899999999997799999999999999 9999999985444

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.3e-41  Score=291.00  Aligned_cols=205  Identities=29%  Similarity=0.479  Sum_probs=188.6

Q ss_pred             ceeeeEEeccCCCCeEEEEEecCCC-CCCeEEEEEeeeecChhhhhhhhCCCCC---CCCCeeeecceeEEEEEeCCCCC
Q 026140           15 IQCRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFP---AVFPRILGHEAIGVVESVGENVD   90 (243)
Q Consensus        15 ~~~ka~~~~~~~~~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~---~~~p~vlG~e~~G~Vv~vG~~v~   90 (243)
                      ..|+|+++..+++ +++.+.|.|++ .|+||+|++.+++||++|++++...+..   .+.|+++|||.+|+|+++|+.|+
T Consensus         3 ~~~~A~vl~g~~d-i~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk   81 (354)
T KOG0024|consen    3 ADNLALVLRGKGD-IRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVK   81 (354)
T ss_pred             cccceeEEEccCc-eeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccccc
Confidence            4689999999998 99999999987 9999999999999999999999765422   46899999999999999999999


Q ss_pred             ccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEc
Q 026140           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (243)
Q Consensus        91 ~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i  170 (243)
                      ++++||||++-|..+|+.|..|++|.+|+|+.+.+-  -....+|                   ++++|++.++++++++
T Consensus        82 ~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~--atpp~~G-------------------~la~y~~~~~dfc~KL  140 (354)
T KOG0024|consen   82 HLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFC--ATPPVDG-------------------TLAEYYVHPADFCYKL  140 (354)
T ss_pred             ccccCCeEEecCCCccccchhhhCcccccCCccccc--cCCCcCC-------------------ceEEEEEechHheeeC
Confidence            999999999999999999999999999999999873  1223344                   9999999999999999


Q ss_pred             CCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcCC
Q 026140          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE  243 (243)
Q Consensus       171 p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~~  243 (243)
                      ||+++++++|++. +++++++|. +++++++|.+|||+|+|++|+++...|+++|+.+|+.++-.+.|+++||
T Consensus       141 Pd~vs~eeGAl~e-PLsV~~HAc-r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak  211 (354)
T KOG0024|consen  141 PDNVSFEEGALIE-PLSVGVHAC-RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAK  211 (354)
T ss_pred             CCCCchhhccccc-chhhhhhhh-hhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHH
Confidence            9999999999998 899999975 7899999999999999999999999999999999999999999999874

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=100.00  E-value=3.1e-38  Score=283.85  Aligned_cols=225  Identities=48%  Similarity=0.784  Sum_probs=190.2

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd   96 (243)
                      |||+++..+++++++++++.|.|.++||+|||.+++||++|++++.|.++...+|.++|||++|+|+++|+++++|++||
T Consensus         2 ~~a~~~~~~~~~l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd   81 (368)
T TIGR02818         2 SRAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHEGAGIVEAVGEGVTSVKVGD   81 (368)
T ss_pred             ceEEEEecCCCCeEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCCCCCCeeeccccEEEEEEECCCCccCCCCC
Confidence            89999999887799999999999999999999999999999999988765556799999999999999999999999999


Q ss_pred             EEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCCh
Q 026140           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (243)
Q Consensus        97 ~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~  176 (243)
                      +|++.+..+|++|.+|+.+..++|.......+.|...+|..++. ..|...++..+.|+|+||++++.++++++|+++++
T Consensus        82 rV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l~~  160 (368)
T TIGR02818        82 HVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFS-KDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPL  160 (368)
T ss_pred             EEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccc-cCCCcccccccCccceeeEEechhheEECCCCCCH
Confidence            99999999999999999999999987542112232222221111 01111122223469999999999999999999999


Q ss_pred             hhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       177 ~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++++.+++++.|+|+++.+..++++|++|||+|+|++|++++|+|+++|+.+|++++++++|++++
T Consensus       161 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a  226 (368)
T TIGR02818       161 EEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELA  226 (368)
T ss_pred             HHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence            999999999999999877788899999999999999999999999999997799999999887764

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PLN02740 Alcohol dehydrogenase-like

Probab=100.00  E-value=2e-38  Score=286.37  Aligned_cols=235  Identities=54%  Similarity=0.950  Sum_probs=192.9

Q ss_pred             CCCCCCCceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeC
Q 026140            8 NKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVG   86 (243)
Q Consensus         8 ~~~~~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG   86 (243)
                      +++.+++++|||+++.++++++.+++++.|.|.++||+|||++++||++|++++.|.++. ..+|.++|||++|+|+++|
T Consensus         2 ~~~~~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG   81 (381)
T PLN02740          2 SETQGKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVG   81 (381)
T ss_pred             ccccccceeeEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeC
Confidence            345677889999999999877889999999999999999999999999999999886532 3578999999999999999


Q ss_pred             CCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCcccccc-CCceeecccccceeeeeEEecc
Q 026140           87 ENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDL-RGETIHHFVSVSSFSEYTVLDI  164 (243)
Q Consensus        87 ~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~-~~~~~~~~~~~g~~~~~~~v~~  164 (243)
                      +++++|++||+|++.+..+|+.|.+|..+.+++|++.......+.. .+|..+++.. .+....++...|+|+||++++.
T Consensus        82 ~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~  161 (381)
T PLN02740         82 EGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDS  161 (381)
T ss_pred             CCCCcCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEeh
Confidence            9999999999999999999999999999999999886532110000 0010000000 0000011122369999999999


Q ss_pred             CcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       165 ~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +.++++|+++++++++.+.+.+.|+|+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|++++
T Consensus       162 ~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a  239 (381)
T PLN02740        162 ACVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKG  239 (381)
T ss_pred             HHeEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHH
Confidence            999999999999999999999999999877788999999999999999999999999999996699999999888765

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=100.00  E-value=1.3e-37  Score=279.46  Aligned_cols=227  Identities=55%  Similarity=0.970  Sum_probs=191.1

Q ss_pred             ceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCC
Q 026140           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (243)
Q Consensus        15 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~   94 (243)
                      ++|||+++.++++++++++++.|.|+++||+|||.+++||++|+++++|..+...+|.++|||++|+|+++|+++++|++
T Consensus         1 ~~~ka~~~~~~~~~~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~   80 (369)
T cd08301           1 ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRILGHEAAGIVESVGEGVTDLKP   80 (369)
T ss_pred             CccEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCCCCCCcccccccceEEEEeCCCCCcccc
Confidence            47999999998888999999999999999999999999999999999887655567899999999999999999999999


Q ss_pred             CCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCC-CCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (243)
Q Consensus        95 Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~-~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~  173 (243)
                      ||+|++.+..+|++|.+|..+.+++|.........|... ++..++. ..|...+++...|+|+||++++...++++|++
T Consensus        81 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~  159 (369)
T cd08301          81 GDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFS-INGKPIYHFVGTSTFSEYTVVHVGCVAKINPE  159 (369)
T ss_pred             CCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccc-cCCcceeeeeccccceeEEEEecccEEECCCC
Confidence            999999999999999999999999998764321122211 0000000 11222223333469999999999999999999


Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++++++++.+.+.|+|.++....++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|++++
T Consensus       160 ~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~  228 (369)
T cd08301         160 APLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQA  228 (369)
T ss_pred             CCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence            999999999999999999887788899999999999999999999999999996799999999887764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=100.00  E-value=3e-37  Score=277.28  Aligned_cols=226  Identities=49%  Similarity=0.846  Sum_probs=191.1

Q ss_pred             eeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140           16 QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (243)
Q Consensus        16 ~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G   95 (243)
                      +|||+++.+.++++++++++.|.|.++||+|||++++||++|+.++.+.++...+|.++|||++|+|+++|+++++|++|
T Consensus         2 ~~~a~~~~~~~~~~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vG   81 (368)
T cd08300           2 TCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVILGHEGAGIVESVGEGVTSVKPG   81 (368)
T ss_pred             cceEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCccCCCCceeccceeEEEEEeCCCCccCCCC
Confidence            68999998888779999999999999999999999999999999998876555689999999999999999999999999


Q ss_pred             CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCC
Q 026140           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (243)
Q Consensus        96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~  175 (243)
                      |+|++.+..+|++|.+|+.+.+++|.......+.|...+|..++. .+|...+++.+.|+|+||+.++.+.++++|++++
T Consensus        82 drV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l~  160 (368)
T cd08300          82 DHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFS-CKGKPIYHFMGTSTFSEYTVVAEISVAKINPEAP  160 (368)
T ss_pred             CEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCccccc-cCCcccccccccccceeEEEEchhceEeCCCCCC
Confidence            999999999999999999999999987542212233333322211 1121112222346999999999999999999999


Q ss_pred             hhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++++.+.+.+.|+|+++.+...+++|++|||+|+|++|++++|+|+.+|+.+|++++++++|++++
T Consensus       161 ~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~  227 (368)
T cd08300         161 LDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELA  227 (368)
T ss_pred             hhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence            9999999999999999877778899999999999999999999999999996799999999888764

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=100.00  E-value=1.7e-36  Score=272.71  Aligned_cols=224  Identities=38%  Similarity=0.616  Sum_probs=185.6

Q ss_pred             eeeEEeccCCC--------CeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCC
Q 026140           17 CRAAIATAPGE--------PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN   88 (243)
Q Consensus        17 ~ka~~~~~~~~--------~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~   88 (243)
                      |||+++.+++.        .+++++++.|.|+++||+|||.+++||++|++++.|.++. .+|.++|||++|+|+++|++
T Consensus         1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~~-~~p~i~GhE~~G~V~~vG~~   79 (371)
T cd08281           1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPR-PLPMALGHEAAGVVVEVGEG   79 (371)
T ss_pred             CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCCC-CCCccCCccceeEEEEeCCC
Confidence            78999998763        3889999999999999999999999999999999886543 57899999999999999999


Q ss_pred             CCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEE
Q 026140           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV  168 (243)
Q Consensus        89 v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~  168 (243)
                      +++|++||+|++.+..+|+.|.+|+.+.+++|.........|....|..++....+.. .+..+.|+|+||+.++.++++
T Consensus        80 v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~-~~~~g~G~~aey~~v~~~~~~  158 (371)
T cd08281          80 VTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEI-NHHLGVSAFAEYAVVSRRSVV  158 (371)
T ss_pred             CCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCcccccccCccc-ccccCcccceeeEEecccceE
Confidence            9999999999988888999999999999999987653322232222211111000000 111123599999999999999


Q ss_pred             EcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       169 ~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++|+++++++|+++.+...|+|+++.+..++++|++|||.|+|++|++++|+|+.+|+.+|++++++++|++++
T Consensus       159 ~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a  232 (371)
T cd08281         159 KIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALA  232 (371)
T ss_pred             ECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHH
Confidence            99999999999999999999999877788899999999999999999999999999996699999999988764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=100.00  E-value=7.1e-36  Score=268.08  Aligned_cols=225  Identities=50%  Similarity=0.905  Sum_probs=189.5

Q ss_pred             ceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCC
Q 026140           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (243)
Q Consensus        15 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~   94 (243)
                      +++||+++.+.+++++++++|.|.|.++||+|||+++++|++|++.+.|..+ ..+|.++|||++|+|+++|+++++|++
T Consensus         1 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~   79 (365)
T cd08277           1 IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA-TLFPVILGHEGAGIVESVGEGVTNLKP   79 (365)
T ss_pred             CccEEEEEccCCCCcEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC-CCCCeecccceeEEEEeeCCCCccCCC
Confidence            4689999998887799999999999999999999999999999999988654 457899999999999999999999999


Q ss_pred             CCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC
Q 026140           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (243)
Q Consensus        95 Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~  174 (243)
                      ||+|++.+..+|++|.+|..+.+++|+...+- ..|...++..++. ..|...+++.+.|+|+||++++.+.++++|+++
T Consensus        80 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l  157 (365)
T cd08277          80 GDKVIPLFIGQCGECSNCRSGKTNLCQKYRAN-ESGLMPDGTSRFT-CKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAA  157 (365)
T ss_pred             CCEEEECCCCCCCCCchhcCcCcccCcCcccc-ccccccCCccccc-cCCcccccccccccceeeEEEchhheEECCCCC
Confidence            99999999999999999999999999876532 1233222211111 011111122234699999999999999999999


Q ss_pred             ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++++++.+.+++.|+|+++.+..++++|++|+|+|+|++|++++|+|+.+|+.+|++++++++|++++
T Consensus       158 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~  225 (365)
T cd08277         158 PLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKA  225 (365)
T ss_pred             CHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence            99999999999999999877788899999999999999999999999999997799999998887754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PLN02827 Alcohol dehydrogenase-like

Probab=100.00  E-value=6.7e-36  Score=269.73  Aligned_cols=228  Identities=49%  Similarity=0.893  Sum_probs=184.6

Q ss_pred             CCCCCceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCC
Q 026140           10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (243)
Q Consensus        10 ~~~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v   89 (243)
                      ..|....|||+++.++++.+.+++++.|.|+++||+|||++++||++|++++.+..   .+|.++|||++|+|+++|+++
T Consensus         6 ~~~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~---~~p~i~GhE~~G~V~~vG~~v   82 (378)
T PLN02827          6 SQPNVITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA---LFPRIFGHEASGIVESIGEGV   82 (378)
T ss_pred             cCcccceeEEEEEecCCCCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC---CCCeeecccceEEEEEcCCCC
Confidence            34445679999999888768999999999999999999999999999999887642   468899999999999999999


Q ss_pred             CccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCC-CCCccccccCCceeecccccceeeeeEEeccCcEE
Q 026140           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV  168 (243)
Q Consensus        90 ~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~-~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~  168 (243)
                      ++|++||+|+..+..+|++|.+|+.+.+++|+..... ..|... ++..++. ..|....++...|+|+||+.++.+.++
T Consensus        83 ~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~-~~~~~~~~~~~~~~-~~g~~~~~~~~~G~~aeyv~v~~~~~~  160 (378)
T PLN02827         83 TEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLE-RKGVMHSDQKTRFS-IKGKPVYHYCAVSSFSEYTVVHSGCAV  160 (378)
T ss_pred             cccCCCCEEEEecCCCCCCChhhhCcCcccccCcccc-ccccccCCCccccc-ccCcccccccccccceeeEEechhheE
Confidence            9999999999999899999999999999999875321 001000 0000000 000000001113699999999999999


Q ss_pred             EcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       169 ~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++|+++++++++.+.+.+.++|+++....++++|++|||+|+|++|++++|+|+++|+..|++++++++|++++
T Consensus       161 ~iP~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a  234 (378)
T PLN02827        161 KVDPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKA  234 (378)
T ss_pred             ECCCCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH
Confidence            99999999999999889899998777778899999999999999999999999999996688888888887764

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=100.00  E-value=3.4e-36  Score=269.40  Aligned_cols=216  Identities=35%  Similarity=0.598  Sum_probs=184.2

Q ss_pred             eeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140           16 QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (243)
Q Consensus        16 ~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G   95 (243)
                      +|||+++.+++.++++++++.|.|+++||+|||.++++|++|++++.|.++. .+|.++|||++|+|+++|+++++|++|
T Consensus         1 ~mka~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~~-~~p~i~G~e~~G~V~~vG~~v~~~~~G   79 (358)
T TIGR03451         1 TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIND-EFPFLLGHEAAGVVEAVGEGVTDVAPG   79 (358)
T ss_pred             CcEEEEEccCCCCCEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCccc-cCCcccccceEEEEEEeCCCCcccCCC
Confidence            5899999999988999999999999999999999999999999998886542 578999999999999999999999999


Q ss_pred             CEEEeeccCCCCCCccccCCCCCCCCCCCCCC-CCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC
Q 026140           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKI-SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (243)
Q Consensus        96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~-~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~  174 (243)
                      |+|++.+..+|+.|.+|..+..++|....... ..+. .+|         .......+.|+|+||+.++.+.++++|+++
T Consensus        80 drV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~-~~g---------~~~~~~~~~G~~aey~~v~~~~~~~ip~~~  149 (358)
T TIGR03451        80 DYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTL-TDG---------TELSPALGIGAFAEKTLVHAGQCTKVDPAA  149 (358)
T ss_pred             CEEEEccCCCCCCChHHhCcCcccCcCcccccccccc-ccC---------cccccccccccccceEEEehhheEECCCCC
Confidence            99999999999999999999999997532210 0000 001         000000123699999999999999999999


Q ss_pred             ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++++|+++.+.+.++|.++.+...+++|++|||+|+|++|++++|+|+.+|+.+|++++++++|++++
T Consensus       150 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~  217 (358)
T TIGR03451       150 DPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWA  217 (358)
T ss_pred             ChhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence            99999999999999998877778899999999999999999999999999996699999999888764

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=100.00  E-value=4.6e-36  Score=266.07  Aligned_cols=203  Identities=30%  Similarity=0.454  Sum_probs=180.1

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC-CCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGVVEG   95 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G   95 (243)
                      |||+++.+++. +++++++.|.|.++||+||+.+++||++|.+.+.+.+. ...+|.++|||++|+|+++|+++++|++|
T Consensus         1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   79 (339)
T cd08239           1 MRGAVFPGDRT-VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFRVG   79 (339)
T ss_pred             CeEEEEecCCc-eEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCCCC
Confidence            78999998776 99999999999999999999999999999998876532 22357899999999999999999999999


Q ss_pred             CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCC
Q 026140           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (243)
Q Consensus        96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~  175 (243)
                      |+|++.+..+|+.|.+|+.+++++|.....  ..|...+|                   +|++|++++.+.++++|++++
T Consensus        80 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~--~~g~~~~G-------------------~~ae~~~v~~~~~~~~P~~~~  138 (339)
T cd08239          80 DRVMVYHYVGCGACRNCRRGWMQLCTSKRA--AYGWNRDG-------------------GHAEYMLVPEKTLIPLPDDLS  138 (339)
T ss_pred             CEEEECCCCCCCCChhhhCcCcccCcCccc--ccccCCCC-------------------cceeEEEechHHeEECCCCCC
Confidence            999999999999999999999999976543  13333334                   999999999999999999999


Q ss_pred             hhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++|+.+.+++.|+|+++ ...++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|++++
T Consensus       139 ~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~  204 (339)
T cd08239         139 FADGALLLCGIGTAYHAL-RRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELA  204 (339)
T ss_pred             HHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            999999999999999976 567889999999999999999999999999994499999998887654

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=7.5e-36  Score=267.76  Aligned_cols=208  Identities=24%  Similarity=0.345  Sum_probs=178.4

Q ss_pred             CCCceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCc
Q 026140           12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG   91 (243)
Q Consensus        12 ~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~   91 (243)
                      ..||+++++.+.+..+.+++.+++.|.|+++||+|||.+++||++|++++.|.++...+|.++|||++|+|+++|+++++
T Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~   87 (360)
T PLN02586          8 EHPQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTKLGKNVKK   87 (360)
T ss_pred             hchhheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCCCCCCccCCcceeEEEEEECCCCCc
Confidence            34788999999888777999999999999999999999999999999999876544467899999999999999999999


Q ss_pred             cCCCCEEEeecc-CCCCCCccccCCCCCCCCCCCCCC-C---CCCCCCCCccccccCCceeecccccceeeeeEEeccCc
Q 026140           92 VVEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKI-S---PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH  166 (243)
Q Consensus        92 ~~~Gd~Vv~~~~-~~~~~c~~c~~~~~~~~~~~~~~~-~---~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~  166 (243)
                      |++||+|++.+. .+|++|.+|+.+.+++|++..... .   .|...+                   |+|+||++++.+.
T Consensus        88 ~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~-------------------G~~aey~~v~~~~  148 (360)
T PLN02586         88 FKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNY-------------------GGYSDMIVVDQHF  148 (360)
T ss_pred             cCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCC-------------------CccceEEEEchHH
Confidence            999999986543 579999999999999998754310 0   011112                   4999999999999


Q ss_pred             EEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          167 VVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       167 ~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                      ++++|+++++++++.+.+...|+|+++......++|++|+|.|+|++|++++|+|+.+|+ +|++++.++++.
T Consensus       149 ~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~  220 (360)
T PLN02586        149 VLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKE  220 (360)
T ss_pred             eeeCCCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchh
Confidence            999999999999999999999999977555667899999999999999999999999999 788887776553

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=100.00  E-value=1.6e-35  Score=268.53  Aligned_cols=209  Identities=27%  Similarity=0.362  Sum_probs=172.6

Q ss_pred             eeeeEEeccCCCCeEEEEEecCCCC-------CCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCC
Q 026140           16 QCRAAIATAPGEPLVIDEVIVDPPN-------SHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN   88 (243)
Q Consensus        16 ~~ka~~~~~~~~~~~~~e~~~p~~~-------~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~   88 (243)
                      -|||+++.++++ +++++++.|.|+       +|||||||++++||++|++++.|..+ ..+|.++|||++|+|+++|++
T Consensus         2 ~mka~v~~~~~~-~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~-~~~p~i~GhE~~G~V~~vG~~   79 (393)
T TIGR02819         2 GNRGVVYLGPGK-VEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTT-APTGLVLGHEITGEVIEKGRD   79 (393)
T ss_pred             CceEEEEecCCc-eeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCC-CCCCccccceeEEEEEEEcCc
Confidence            389999999887 999999999874       68999999999999999999988653 357899999999999999999


Q ss_pred             CCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCC---CCCCCCCCCccccccCCceeecccccceeeeeEEeccC
Q 026140           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI---SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA  165 (243)
Q Consensus        89 v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~---~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~  165 (243)
                      |++|++||||++.+..+|++|.+|+++.+++|+......   ..|+...|               .-.|+|+||+.++..
T Consensus        80 V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~---------------~~~G~~aey~~v~~~  144 (393)
T TIGR02819        80 VEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMG---------------GWVGGQSEYVMVPYA  144 (393)
T ss_pred             cccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccC---------------CCCCceEEEEEechh
Confidence            999999999999999999999999999999998743210   11210000               001499999999964


Q ss_pred             --cEEEcCCCCCh----hhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          166 --HVVKVDPTVPP----NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       166 --~~~~ip~~~~~----~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                        +++++|++++.    .+++.+.+++.++|+++ ...++++|++|+|.|+|++|++++|+|+.+|+..+++++++++|+
T Consensus       145 ~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~  223 (393)
T TIGR02819       145 DFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA-VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARL  223 (393)
T ss_pred             hCceEECCCcccccccccceeeeccHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH
Confidence              79999988653    34667777899999975 567899999999998999999999999999995566677778787


Q ss_pred             hcC
Q 026140          240 EIG  242 (243)
Q Consensus       240 ~~~  242 (243)
                      +++
T Consensus       224 ~~a  226 (393)
T TIGR02819       224 AQA  226 (393)
T ss_pred             HHH
Confidence            765

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=100.00  E-value=1e-35  Score=266.06  Aligned_cols=206  Identities=29%  Similarity=0.388  Sum_probs=168.6

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCe-eeecceeEEEEEeCCCCCccCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPR-ILGHEAIGVVESVGENVDGVVEG   95 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~-vlG~e~~G~Vv~vG~~v~~~~~G   95 (243)
                      |+++++..++...++++.+.|.+.++||+|||.+++||++|++++.+..+....|. ++|||++|+|+++| .++.|++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~~~~~~i~GHE~~G~V~evG-~~~~~~~G   79 (350)
T COG1063           1 MKAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGHEFVGEVVEVG-VVRGFKVG   79 (350)
T ss_pred             CceeEEEecCCccccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCCCCCCcccCccceEEEEEec-cccCCCCC
Confidence            56777777775344677767778999999999999999999999999877766666 99999999999999 77889999


Q ss_pred             CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCC--CCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEc-CC
Q 026140           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP--WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV-DP  172 (243)
Q Consensus        96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~--g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i-p~  172 (243)
                      |||++.+..+|++|.+|+.+.+++|++.++-...  +...+                   |+|+||+.+|.++++.+ |+
T Consensus        80 drVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~-------------------G~~aEyv~vp~~~~~~~~pd  140 (350)
T COG1063          80 DRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGID-------------------GGFAEYVRVPADFNLAKLPD  140 (350)
T ss_pred             CEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCC-------------------CceEEEEEeccccCeecCCC
Confidence            9999999999999999999999999955431111  11123                   49999999997655554 78


Q ss_pred             CCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcCC
Q 026140          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE  243 (243)
Q Consensus       173 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~~  243 (243)
                      +++.+.|++.. +++++|++........++++|+|+|+|++|++++++++.+|+.+||+++++++|+++++
T Consensus       141 ~~~~~~aal~e-pla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~  210 (350)
T COG1063         141 GIDEEAAALTE-PLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAK  210 (350)
T ss_pred             CCChhhhhhcC-hhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHH
Confidence            87545555544 99999886445555666779999999999999999999999999999999999999874

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=1.8e-35  Score=263.24  Aligned_cols=206  Identities=22%  Similarity=0.357  Sum_probs=173.1

Q ss_pred             CceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhh-CCCC--CCCCCeeeecceeEEEEEeCCCCC
Q 026140           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDF--PAVFPRILGHEAIGVVESVGENVD   90 (243)
Q Consensus        14 ~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~-g~~~--~~~~p~vlG~e~~G~Vv~vG~~v~   90 (243)
                      ..++|+++++++++ +++++++.| +.++||||||.+++||++|++++. +...  ...+|.++|||++|+|+++  +++
T Consensus         2 ~~~~~~~~~~~~~~-~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~   77 (343)
T PRK09880          2 QVKTQSCVVAGKKD-VAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSS   77 (343)
T ss_pred             cccceEEEEecCCc-eEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCc
Confidence            35789999999988 999999987 689999999999999999999875 3322  2357899999999999999  788


Q ss_pred             ccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEc
Q 026140           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (243)
Q Consensus        91 ~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i  170 (243)
                      +|++||+|++.+..+|++|.+|+.+.+++|+....   .|....              +....|+|+||++++.+.++++
T Consensus        78 ~~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~--------------~~~~~G~~aey~~v~~~~~~~~  140 (343)
T PRK09880         78 GLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRF---FGSAMY--------------FPHVDGGFTRYKVVDTAQCIPY  140 (343)
T ss_pred             cCCCCCEEEECCCCCCcCChhhcCCChhhCCCcce---eecccc--------------cCCCCCceeeeEEechHHeEEC
Confidence            99999999999999999999999999999987553   221000              0000149999999999999999


Q ss_pred             CCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       171 p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      |++++++++++. .+++++|+++ ......+|++|+|+|+|++|++++|+|+++|+.+|++++++++|++++
T Consensus       141 P~~l~~~~aa~~-~~~~~a~~al-~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a  210 (343)
T PRK09880        141 PEKADEKVMAFA-EPLAVAIHAA-HQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLA  210 (343)
T ss_pred             CCCCCHHHHHhh-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHH
Confidence            999999876644 4788999976 455667899999999999999999999999997799999999998865

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=100.00  E-value=1.5e-34  Score=260.35  Aligned_cols=229  Identities=46%  Similarity=0.803  Sum_probs=194.1

Q ss_pred             CCCceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCc
Q 026140           12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG   91 (243)
Q Consensus        12 ~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~   91 (243)
                      .+..+|||+++..++++++++++|.|.|.++||+||++++++|++|.+.+.|... ..+|.++|||++|+|+++|++++.
T Consensus         3 ~~~~~~~a~~~~~~~~~~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~   81 (373)
T cd08299           3 GKVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV-TPFPVILGHEAAGIVESVGEGVTT   81 (373)
T ss_pred             cccceeEEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC-CCCCccccccceEEEEEeCCCCcc
Confidence            4557799999999888899999999999999999999999999999999988753 357889999999999999999999


Q ss_pred             cCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcC
Q 026140           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (243)
Q Consensus        92 ~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip  171 (243)
                      |++||+|++.+..+|++|.+|+.+..++|+........|...++..+++ .+|...+++...|+|++|++++.+.++++|
T Consensus        82 ~~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP  160 (373)
T cd08299          82 VKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFT-CKGKPIHHFLGTSTFSEYTVVDEIAVAKID  160 (373)
T ss_pred             CCCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccc-cCCcccccccCCCcccceEEecccceeeCC
Confidence            9999999998899999999999999999987654222233323222222 123333344345799999999999999999


Q ss_pred             CCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++++++++.+.+++.++|+++....++++|++|+|+|+|++|++++++|+.+|+.+|++++++++|++.+
T Consensus       161 ~~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a  231 (373)
T cd08299         161 AAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKA  231 (373)
T ss_pred             CCCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence            99999999999999999999877888999999999998899999999999999996799999888887654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=1.2e-34  Score=257.02  Aligned_cols=199  Identities=24%  Similarity=0.314  Sum_probs=175.0

Q ss_pred             EEeccCCC----CeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140           20 AIATAPGE----PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (243)
Q Consensus        20 ~~~~~~~~----~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G   95 (243)
                      +.+.+++.    .++++++|.|.|+++||+|||++++||++|.+++.|.++...+|.++|||++|+|+++|+++++|++|
T Consensus         2 ~~~~~~g~~~~~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   81 (329)
T TIGR02822         2 WEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPGHEVVGEVAGRGADAGGFAVG   81 (329)
T ss_pred             eeeecCCcCCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCCCCCCccCCcceEEEEEEECCCCcccCCC
Confidence            45555553    38889999999999999999999999999999998876544457899999999999999999999999


Q ss_pred             CEEEeecc-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC
Q 026140           96 DVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (243)
Q Consensus        96 d~Vv~~~~-~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~  174 (243)
                      |+|++.+. .+|+.|.+|..+.+++|+...+   .|...+|                   +|+||+.++.+.++++|+++
T Consensus        82 d~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~lP~~~  139 (329)
T TIGR02822        82 DRVGIAWLRRTCGVCRYCRRGAENLCPASRY---TGWDTDG-------------------GYAEYTTVPAAFAYRLPTGY  139 (329)
T ss_pred             CEEEEcCccCcCCCChHHhCcCcccCCCccc---CCcccCC-------------------cceeEEEeccccEEECCCCC
Confidence            99976653 5799999999999999987654   3433334                   99999999999999999999


Q ss_pred             ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++++++.+++.+.|+|+++ ...++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|++++
T Consensus       140 ~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a  205 (329)
T TIGR02822       140 DDVELAPLLCAGIIGYRAL-LRASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLA  205 (329)
T ss_pred             CHHHhHHHhccchHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHH
Confidence            9999999999999999976 46889999999999999999999999999999 799999999988765

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=100.00  E-value=4.4e-34  Score=255.39  Aligned_cols=202  Identities=25%  Similarity=0.321  Sum_probs=164.3

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC---CCCCeeeecceeEEEEEeCCCCCccC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP---AVFPRILGHEAIGVVESVGENVDGVV   93 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~---~~~p~vlG~e~~G~Vv~vG~~v~~~~   93 (243)
                      |||+++..++.+++++++|.|+|.++||||||++++||++|.++++|.++.   ..+|.++|||++|+|+++|++ ++|+
T Consensus         1 mka~~~~~~~~~l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~   79 (355)
T cd08230           1 MKAIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLS   79 (355)
T ss_pred             CceeEecCCCCCCeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCC
Confidence            688998865434899999999999999999999999999999999886532   246899999999999999999 9999


Q ss_pred             CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCceeecccccceeeeeEEeccCcEEEcCC
Q 026140           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (243)
Q Consensus        94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~  172 (243)
                      +||+|+..+..+|+.|.+|+.+.+++|+...+. ..|.. .+                   |+|+||++++.+.++++|+
T Consensus        80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~-~~g~~~~~-------------------G~~aey~~~~~~~~~~~P~  139 (355)
T cd08230          80 PGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYT-ERGIKGLH-------------------GFMREYFVDDPEYLVKVPP  139 (355)
T ss_pred             CCCEEEeccccCCCcChhhhCcCcccCCCccee-ccCcCCCC-------------------ccceeEEEeccccEEECCC
Confidence            999999998889999999999999999865421 01211 12                   4999999999999999999


Q ss_pred             CCChhhhcccchhhHhHHHHHH------HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC---CchhhhcC
Q 026140          173 TVPPNRACLLSCGVSTGVGAAW------RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV---ISEKFEIG  242 (243)
Q Consensus       173 ~~~~~~aa~~~~~~~ta~~~l~------~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~---~~~~~~~~  242 (243)
                      +++ +.+ .+..++.+++.++.      ...+.++|++|+|+|+|++|++++|+|+++|+ +|+++++   +++|++++
T Consensus       140 ~~~-~~a-~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~  215 (355)
T cd08230         140 SLA-DVG-VLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIV  215 (355)
T ss_pred             CCC-cce-eecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHH
Confidence            999 443 33445555444322      12235789999999999999999999999999 8999987   56776654

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=100.00  E-value=4.3e-34  Score=254.53  Aligned_cols=199  Identities=21%  Similarity=0.197  Sum_probs=165.1

Q ss_pred             ceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC----CCCCeeeecceeEEEEEeCCCCC
Q 026140           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP----AVFPRILGHEAIGVVESVGENVD   90 (243)
Q Consensus        15 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~----~~~p~vlG~e~~G~Vv~vG~~v~   90 (243)
                      |..|+++++++++ ++++|++.|. +++||||||++++||++|+++++|.+..    ..+|.++|||++|+|+++|.+  
T Consensus         1 ~~~~~~~~~~~~~-~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--   76 (341)
T cd08237           1 MINQVYRLVRPKF-FEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--   76 (341)
T ss_pred             CcccceEEeccce-EEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--
Confidence            4678999999997 9999999994 9999999999999999999999886532    357999999999999998764  


Q ss_pred             ccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEc
Q 026140           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (243)
Q Consensus        91 ~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i  170 (243)
                      +|++||+|++.+..+|+ |..|  ...++|....+   .|...+                   |+|+||++++.++++++
T Consensus        77 ~~~vGdrV~~~~~~~~~-~~~~--~~~~~c~~~~~---~g~~~~-------------------G~~aey~~v~~~~~~~v  131 (341)
T cd08237          77 TYKVGTKVVMVPNTPVE-KDEI--IPENYLPSSRF---RSSGYD-------------------GFMQDYVFLPPDRLVKL  131 (341)
T ss_pred             ccCCCCEEEECCCCCch-hccc--chhccCCCcce---eEecCC-------------------CceEEEEEEchHHeEEC
Confidence            69999999998887777 4455  35678876543   222223                   49999999999999999


Q ss_pred             CCCCChhhhcccchhhHhHHHHHHH--hcCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCCchhhhcCC
Q 026140          171 DPTVPPNRACLLSCGVSTGVGAAWR--TANVEVGSTVVIFGLGSIGLAVAEGARL-CGATRIIGVDVISEKFEIGE  243 (243)
Q Consensus       171 p~~~~~~~aa~~~~~~~ta~~~l~~--~~~~~~g~~VlI~GaG~vG~~~v~la~~-~g~~~vi~~~~~~~~~~~~~  243 (243)
                      |+++++++|+++. +++++|+++..  ....++|++|||+|+|++|++++|+++. +|..+|++++++++|+++++
T Consensus       132 P~~l~~~~aa~~~-~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~  206 (341)
T cd08237         132 PDNVDPEVAAFTE-LVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFS  206 (341)
T ss_pred             CCCCChHHhhhhc-hHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHh
Confidence            9999999887665 88888887643  3456889999999999999999999986 66558999999999988753

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=5.9e-34  Score=252.14  Aligned_cols=179  Identities=30%  Similarity=0.344  Sum_probs=159.5

Q ss_pred             eeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCC-CCCCCCCeeeecceeEEEEEeCCCCCccC
Q 026140           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-DFPAVFPRILGHEAIGVVESVGENVDGVV   93 (243)
Q Consensus        17 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~-~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~   93 (243)
                      |||+++.+.+.+  ++++|++.|.|.+|||||||++++||+.|..+++|. .+...+|.++|.|++|+|+++|+++++|+
T Consensus         1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~   80 (326)
T COG0604           1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFK   80 (326)
T ss_pred             CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcC
Confidence            688999998876  778999999999999999999999999999999987 34457999999999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (243)
Q Consensus        94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~  173 (243)
                      +||+|+... ..                        +  .+                   |+|+||+.+|++.++++|++
T Consensus        81 ~GdrV~~~~-~~------------------------~--~~-------------------G~~AEy~~v~a~~~~~~P~~  114 (326)
T COG0604          81 VGDRVAALG-GV------------------------G--RD-------------------GGYAEYVVVPADWLVPLPDG  114 (326)
T ss_pred             CCCEEEEcc-CC------------------------C--CC-------------------CcceeEEEecHHHceeCCCC
Confidence            999998653 00                        0  12                   49999999999999999999


Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++++||++++.+.|||+++....++++|++|||+|+ |++|++++|+|+++|+ .++++.+++++.+++
T Consensus       115 ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~  183 (326)
T COG0604         115 LSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELL  183 (326)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHH
Confidence            9999999999999999999988899999999999997 9999999999999998 677777777766543

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=1.9e-33  Score=253.56  Aligned_cols=199  Identities=25%  Similarity=0.349  Sum_probs=166.4

Q ss_pred             EEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCCEEE
Q 026140           20 AIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVI   99 (243)
Q Consensus        20 ~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv   99 (243)
                      +++.+..+.+++.+++.|.|+++||+|||.+++||++|++++.|.+....+|.++|||++|+|+++|+++++|++||+|+
T Consensus        10 ~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~~~~p~i~GhE~aG~Vv~vG~~v~~~~vGdrV~   89 (375)
T PLN02178         10 WAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVG   89 (375)
T ss_pred             EEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCCCCCCcccCceeeEEEEEECCCCCccCCCCEEE
Confidence            44444444588889999999999999999999999999999988654345689999999999999999999999999998


Q ss_pred             eeccC-CCCCCccccCCCCCCCCCCCCCCC----CCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC
Q 026140          100 PHFLA-DCTECVGCRSKKGNLCSAFPFKIS----PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (243)
Q Consensus       100 ~~~~~-~~~~c~~c~~~~~~~~~~~~~~~~----~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~  174 (243)
                      +.+.. +|++|.+|+.+.+++|+...+...    .|...+                   |+|+||++++.+.++++|+++
T Consensus        90 ~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~-------------------G~~aey~~v~~~~~~~lP~~l  150 (375)
T PLN02178         90 VGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQ-------------------GGYSDVIVVDHRFVLSIPDGL  150 (375)
T ss_pred             EcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCC-------------------CccccEEEEchHHeEECCCCC
Confidence            66544 699999999999999987653100    111112                   499999999999999999999


Q ss_pred             ChhhhcccchhhHhHHHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          175 PPNRACLLSCGVSTGVGAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~-~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      ++++++.+.+...|+|+++..... .++|++|+|.|+|++|++++|+|+.+|+ +|+++++++++
T Consensus       151 s~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~  214 (375)
T PLN02178        151 PSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEK  214 (375)
T ss_pred             CHHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHH
Confidence            999999999999999987644332 3689999999999999999999999999 78888877554

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=2.4e-33  Score=251.20  Aligned_cols=210  Identities=23%  Similarity=0.321  Sum_probs=177.4

Q ss_pred             ceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCC
Q 026140           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (243)
Q Consensus        15 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~   94 (243)
                      ..++|+++.+++.++.+++++.|.|+++||+|||.+++||++|++++.+.+....+|.++|||++|+|+++|+++++|++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~Vv~vG~~v~~~~~   87 (357)
T PLN02514          8 KKTTGWAARDPSGHLSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFTV   87 (357)
T ss_pred             ceEEEEEEecCCCCceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCcCCCCccCCceeeEEEEEECCCcccccC
Confidence            45899999999999999999999999999999999999999999998886544457889999999999999999999999


Q ss_pred             CCEEEeecc-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140           95 GDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (243)
Q Consensus        95 Gd~Vv~~~~-~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~  173 (243)
                      ||+|++.+. ..|++|.+|+.+.+++|+...... .+....|              ....|+|+||++++.+.++++|++
T Consensus        88 Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~-~~~~~~g--------------~~~~G~~aey~~v~~~~~~~iP~~  152 (357)
T PLN02514         88 GDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSY-NDVYTDG--------------KPTQGGFASAMVVDQKFVVKIPEG  152 (357)
T ss_pred             CCEEEEcCccccCCCChhHhCCCcccCCCccccc-cccccCC--------------ccCCCccccEEEEchHHeEECCCC
Confidence            999986543 469999999999999998753210 0000001              001249999999999999999999


Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      +++++++.+++.+.|+|+++......++|++|+|+|+|++|++++|+|+.+|+ ++++++++++++.
T Consensus       153 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~  218 (357)
T PLN02514        153 MAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKRE  218 (357)
T ss_pred             CCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHH
Confidence            99999999999999999987655556899999999889999999999999999 7888887776653

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=100.00  E-value=2.9e-33  Score=249.66  Aligned_cols=198  Identities=27%  Similarity=0.474  Sum_probs=173.4

Q ss_pred             EEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCC-CCCCCCCeeeecceeEEEEEeCCCCCccCCCCEE
Q 026140           20 AIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVV   98 (243)
Q Consensus        20 ~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~-~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~V   98 (243)
                      +++.+++++++++++|.|.|+++||+|||.++++|++|++.+.+. .+...+|.++|||++|+|+++|+++..+ +||+|
T Consensus         2 ~~~~~~g~~~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV   80 (349)
T TIGR03201         2 WMMTEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGKAV   80 (349)
T ss_pred             ceEecCCCCceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCCEE
Confidence            567778877899999999999999999999999999999887443 3234568999999999999999999887 99999


Q ss_pred             EeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCC------
Q 026140           99 IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP------  172 (243)
Q Consensus        99 v~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~------  172 (243)
                      ++.+..+|++|.+|+.+.+++|.....   .|...+                   |+|+||+.++.+.++++|+      
T Consensus        81 ~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~-------------------G~~ae~~~v~~~~~~~ip~~~~~~~  138 (349)
T TIGR03201        81 IVPAVIPCGECELCKTGRGTICRAQKM---PGNDMQ-------------------GGFASHIVVPAKGLCVVDEARLAAA  138 (349)
T ss_pred             EECCCCCCCCChhhhCcCcccCCCCCc---cCcCCC-------------------CcccceEEechHHeEECCccccccc
Confidence            999999999999999999999976443   232223                   3999999999999999999      


Q ss_pred             CCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       173 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++++++++.+.+.+.++|+++ ...++++|++|+|+|+|++|++++|+|+++|+ +|++++++++|++++
T Consensus       139 ~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~  206 (349)
T TIGR03201       139 GLPLEHVSVVADAVTTPYQAA-VQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMM  206 (349)
T ss_pred             CCCHHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHH
Confidence            899999998888999999976 45788999999999999999999999999999 899999999887764

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=100.00  E-value=1.2e-32  Score=247.17  Aligned_cols=223  Identities=44%  Similarity=0.772  Sum_probs=193.6

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd   96 (243)
                      +||+++.+.++++++++++.|.|.++||+|++.++++|+.|++.+.+... ..+|.++|||++|+|+++|++++.+++||
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~-~~~~~i~g~e~~G~V~~vG~~v~~~~~Gd   79 (365)
T cd05279           1 CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP-TPLPVILGHEGAGIVESIGPGVTTLKPGD   79 (365)
T ss_pred             CceeEEecCCCCcEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCCCC
Confidence            47899998887799999999999999999999999999999999887654 35678999999999999999999999999


Q ss_pred             EEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCCh
Q 026140           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (243)
Q Consensus        97 ~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~  176 (243)
                      +|++.+..+|+.|.+|..+.+++|....+....|...+|..++.- +|.+.+|+.+.|+|++|+.++.+.++++|+++++
T Consensus        80 ~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~~  158 (365)
T cd05279          80 KVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTC-KGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPL  158 (365)
T ss_pred             EEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeec-cCCccccccccccccceEEecCCceEECCCCCCH
Confidence            999998899999999999999999887765445555555444432 3444556666689999999999999999999999


Q ss_pred             hhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       177 ~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ++++.+.+.+.++|.++.+..++++|++|||+|+|++|++++++|+.+|+..|++++++++|.+.
T Consensus       159 ~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~  223 (365)
T cd05279         159 EKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEK  223 (365)
T ss_pred             HHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH
Confidence            99999998999999988888899999999999889999999999999999668888878877664

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-32  Score=244.68  Aligned_cols=200  Identities=27%  Similarity=0.445  Sum_probs=171.3

Q ss_pred             eeeEEeccCCCCeEEEEEecCCC-CCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G   95 (243)
                      |||+++++++. +++++.+.|.| .++||+|||.++++|++|...+..... ..+|.++|||++|+|+++|+++++|++|
T Consensus         1 Mka~~~~~~~~-~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~vG   78 (347)
T PRK10309          1 MKSVVNDTDGI-VRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNGA-HYYPITLGHEFSGYVEAVGSGVDDLHPG   78 (347)
T ss_pred             CceEEEeCCCc-eEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCCC-CCCCcccccceEEEEEEeCCCCCCCCCC
Confidence            68999998886 99999999997 589999999999999999875432111 1357899999999999999999999999


Q ss_pred             CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCC
Q 026140           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (243)
Q Consensus        96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~  175 (243)
                      |+|++.+..+|+.|.+|..+.+++|+....   .|...+|                   +|++|+.++.+.++++|++++
T Consensus        79 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~lP~~~s  136 (347)
T PRK10309         79 DAVACVPLLPCFTCPECLRGFYSLCAKYDF---IGSRRDG-------------------GNAEYIVVKRKNLFALPTDMP  136 (347)
T ss_pred             CEEEECCCcCCCCCcchhCcCcccCCCcce---eccCCCC-------------------ccceeEEeehHHeEECcCCCC
Confidence            999999999999999999999999976443   3333333                   999999999999999999999


Q ss_pred             hhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++++++. .+.+++.+ .+....++|++|+|+|+|++|++++|+|+.+|++.|++++++++|++++
T Consensus       137 ~~~aa~~~-~~~~~~~~-~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~  201 (347)
T PRK10309        137 IEDGAFIE-PITVGLHA-FHLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALA  201 (347)
T ss_pred             HHHhhhhh-HHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH
Confidence            99998774 55667776 4667889999999999999999999999999995588999998887754

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=100.00  E-value=5.3e-32  Score=243.00  Aligned_cols=225  Identities=36%  Similarity=0.627  Sum_probs=184.8

Q ss_pred             ceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCC
Q 026140           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (243)
Q Consensus        15 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~   94 (243)
                      |+|||+++.+++.++++++.+.|.+.++||+|||.++++|++|..++.+.++ ...|.++|+|++|+|+++|+++.+|++
T Consensus         1 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~~   79 (365)
T cd08278           1 MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP-TPLPAVLGHEGAGVVEAVGSAVTGLKP   79 (365)
T ss_pred             CccEEeeeccCCCcceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCC
Confidence            5799999999877789999999999999999999999999999999888654 346889999999999999999999999


Q ss_pred             CCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCce-eecccccceeeeeEEeccCcEEEcCCC
Q 026140           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET-IHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (243)
Q Consensus        95 Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~-~~~~~~~g~~~~~~~v~~~~~~~ip~~  173 (243)
                      ||+|++.+. .|++|.+|+.+..++|.........|...+|.-.+.+.+|-+ ..+++..|+|++|++++.+.++++|++
T Consensus        80 Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP~~  158 (365)
T cd08278          80 GDHVVLSFA-SCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKD  158 (365)
T ss_pred             CCEEEEccc-CCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEecchhEEECCCC
Confidence            999998764 899999999999999986653222222222100000000000 001223469999999999999999999


Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +++++++.+++.+.||+.++.+...+++|++|+|+|+|++|++++++|+++|+..+++++++++|.++
T Consensus       159 ~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~  226 (365)
T cd08278         159 VPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLEL  226 (365)
T ss_pred             CCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH
Confidence            99999999999999999987788889999999999889999999999999999779999988887764

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=100.00  E-value=7.9e-32  Score=241.01  Aligned_cols=209  Identities=31%  Similarity=0.428  Sum_probs=179.9

Q ss_pred             eeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCc------
Q 026140           18 RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG------   91 (243)
Q Consensus        18 ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~------   91 (243)
                      ||+++.++++.+++++++.|.|+++||+|||.++++|+.|...+.|.++...+|.++|||++|+|+++|+++++      
T Consensus         2 ka~~~~~~~~~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~~~~   81 (361)
T cd08231           2 RAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGHEGVGRVVALGGGVTTDVAGEP   81 (361)
T ss_pred             eEEEEcCCCCCCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCCCCCCcccccCCceEEEEeCCCccccccCCc
Confidence            78999999867999999999999999999999999999999998887653467889999999999999999986      


Q ss_pred             cCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCC-CCCccccccCCceeecccccceeeeeEEeccC-cEEE
Q 026140           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA-HVVK  169 (243)
Q Consensus        92 ~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~-~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~-~~~~  169 (243)
                      |++||+|++.+..+|+.|.+|+.+.+++|+..+..   |... .+..             ...|+|++|++++.+ .+++
T Consensus        82 ~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~---~~~~~~~~~-------------~~~g~~a~~~~v~~~~~~~~  145 (361)
T cd08231          82 LKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKY---GHEASCDDP-------------HLSGGYAEHIYLPPGTAIVR  145 (361)
T ss_pred             cCCCCEEEEcccCCCCCChhHhCcCccccccchhc---cccccccCC-------------CCCcccceEEEecCCCceEE
Confidence            99999999999999999999999999999887642   2111 0000             002599999999986 7999


Q ss_pred             cCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       170 ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +|+++++.+++++++.+.|||.++.+.....+|++|||+|+|++|++++++|+.+|+++|+++++++++.+++
T Consensus       146 lP~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~  218 (361)
T cd08231         146 VPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELA  218 (361)
T ss_pred             CCCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence            9999999999998889999999876656566999999999899999999999999997799999888876653

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=2.3e-31  Score=235.69  Aligned_cols=202  Identities=26%  Similarity=0.402  Sum_probs=178.3

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd   96 (243)
                      |||+++.+++.++++++++.|.+.++||+||+.++++|++|...+.|..+...+|.++|||++|+|+++|+++++|++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd   80 (333)
T cd08296           1 YKAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHEVVGRIDAVGEGVSRWKVGD   80 (333)
T ss_pred             CeEEEEccCCCCceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCCCCCCcccCcceeEEEEEECCCCccCCCCC
Confidence            69999999965699999999999999999999999999999999888654445688999999999999999999999999


Q ss_pred             EEEeec-cCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCC
Q 026140           97 VVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (243)
Q Consensus        97 ~Vv~~~-~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~  175 (243)
                      +|++.+ ...|+.|.+|..++++.|+..+.   .|...+                   |+|++|+.++...++++|++++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~---~~~~~~-------------------g~~a~~~~v~~~~~~~lp~~~~  138 (333)
T cd08296          81 RVGVGWHGGHCGTCDACRRGDFVHCENGKV---TGVTRD-------------------GGYAEYMLAPAEALARIPDDLD  138 (333)
T ss_pred             EEEeccccCCCCCChhhhCcCcccCCCCCc---cCcccC-------------------CcceeEEEEchhheEeCCCCCC
Confidence            998744 57899999999999999987764   233223                   3899999999999999999999


Q ss_pred             hhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++++.+.+.+.++|+++. ...+.++++|+|+|+|++|++++++|+++|+ +|+++++++++++.+
T Consensus       139 ~~~aa~l~~~~~ta~~~~~-~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~  203 (333)
T cd08296         139 AAEAAPLLCAGVTTFNALR-NSGAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLA  203 (333)
T ss_pred             HHHhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHH
Confidence            9999999999999999764 4589999999999999999999999999999 899999988777653

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=100.00  E-value=2.7e-31  Score=240.24  Aligned_cols=219  Identities=29%  Similarity=0.428  Sum_probs=182.7

Q ss_pred             eeeEEeccCCCCeEEEEEecCCC-CCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G   95 (243)
                      |||+++.++++ +++++++.|.| .+++|+||+.+++||++|..++.|.++...+|.++|||++|+|+++|+++++|++|
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   79 (386)
T cd08283           1 MKALVWHGKGD-VRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKKGDILGHEFMGVVEEVGPEVRNLKVG   79 (386)
T ss_pred             CeeEEEecCCC-ceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCCCCCCccccccceEEEEEeCCCCCCCCCC
Confidence            68999998865 99999999988 49999999999999999999998877656678999999999999999999999999


Q ss_pred             CEEEeeccCCCCCCccccCCCCCCCCCCCCC-CCCCCCCCCCccccccCCceeeccc--ccceeeeeEEeccC--cEEEc
Q 026140           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFK-ISPWMPRDQTSRFKDLRGETIHHFV--SVSSFSEYTVLDIA--HVVKV  170 (243)
Q Consensus        96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~-~~~g~~~~g~~~~~~~~~~~~~~~~--~~g~~~~~~~v~~~--~~~~i  170 (243)
                      |+|++.+..+|++|.+|..+.+++|+.+... .+++..  |....+ ..|  +.++.  ..|+|++|++++.+  .++++
T Consensus        80 d~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~--~~~~~~~~~g~~~~~~~v~~~~~~~~~l  154 (386)
T cd08283          80 DRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLY--GHAGAG-IFG--YSHLTGGYAGGQAEYVRVPFADVGPFKI  154 (386)
T ss_pred             CEEEEcCcCCCCCChhhcCCCcccCCCccccccccccc--cccccc-ccc--cccccCCCCCeeEEEEEcccccCeEEEC
Confidence            9999998889999999999999999987643 111110  000000 000  00000  13699999999987  89999


Q ss_pred             CCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       171 p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      |+++++++++.+++...|+|+++ ....+.+|++|+|+|+|++|++++++|+++|+.+++++++++++.+++
T Consensus       155 p~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~  225 (386)
T cd08283         155 PDDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMA  225 (386)
T ss_pred             CCCCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH
Confidence            99999999999998999999987 778899999999998899999999999999985699999998887764

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PRK10083 putative oxidoreductase; Provisional

Probab=100.00  E-value=2.2e-31  Score=235.80  Aligned_cols=201  Identities=25%  Similarity=0.472  Sum_probs=175.1

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd   96 (243)
                      |||+++.+++. +++++++.|.|.++||+||+.++++|++|+..+.+..+...+|.++|||++|+|+++|+++..|++||
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd   79 (339)
T PRK10083          1 MKSIVIEKPNS-LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVDAARIGE   79 (339)
T ss_pred             CeEEEEecCCe-eEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCcCCCCcccccceEEEEEEECCCCccCCCCC
Confidence            68999998886 99999999999999999999999999999999888765445689999999999999999999999999


Q ss_pred             EEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCCh
Q 026140           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (243)
Q Consensus        97 ~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~  176 (243)
                      +|+..+..+|+.|.+|..+.+++|..+..   .+...+                   |+|++|+.++...++++|+++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~~~~~~~~~ip~~~~~  137 (339)
T PRK10083         80 RVAVDPVISCGHCYPCSIGKPNVCTSLVV---LGVHRD-------------------GGFSEYAVVPAKNAHRIPDAIAD  137 (339)
T ss_pred             EEEEccccCCCCCccccCcCcccCCCCce---EEEccC-------------------CcceeeEEechHHeEECcCCCCH
Confidence            99999999999999999999999965442   121112                   49999999999999999999999


Q ss_pred             hhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCCchhhhcC
Q 026140          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL-CGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       177 ~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~-~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++++. ...+.++|. +....++++|++|+|+|+|++|++++|+|+. +|+..+++++++++|.+++
T Consensus       138 ~~a~~-~~~~~~a~~-~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~  202 (339)
T PRK10083        138 QYAVM-VEPFTIAAN-VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALA  202 (339)
T ss_pred             HHHhh-hchHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHH
Confidence            88764 457788885 5677889999999999999999999999996 6996688898888887654

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=99.98  E-value=2.9e-31  Score=236.52  Aligned_cols=205  Identities=28%  Similarity=0.325  Sum_probs=177.6

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd   96 (243)
                      |||+++.+++. +++++.+.|.+.++||+|||+++++|++|.+.+.+.+.....|.++|||++|+|+++|+++++|++||
T Consensus         1 mka~~~~~~~~-~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd   79 (351)
T cd08285           1 MKAFAMLGIGK-VGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGMILGHEAVGVVEEVGSEVKDFKPGD   79 (351)
T ss_pred             CceEEEccCCc-cEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCCCCCCcccCcceEEEEEEecCCcCccCCCC
Confidence            78999999886 88999999999999999999999999999998877655456789999999999999999999999999


Q ss_pred             EEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccC--cEEEcCCCC
Q 026140           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPTV  174 (243)
Q Consensus        97 ~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~--~~~~ip~~~  174 (243)
                      +|++.+..+|+.|..|..+..++|.........+...+                   |+|++|++++.+  .++++|+++
T Consensus        80 ~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~-------------------g~~~~y~~v~~~~~~~~~lP~~~  140 (351)
T cd08285          80 RVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKD-------------------GVFAEYFHVNDADANLAPLPDGL  140 (351)
T ss_pred             EEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCC-------------------cceeEEEEcchhhCceEECCCCC
Confidence            99998888999999999999999976431000011112                   499999999874  899999999


Q ss_pred             ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++++++.++..+.|+|++ .+...+++|++|||+|+|++|++++|+|+.+|+..+++++++++|.+++
T Consensus       141 ~~~~aa~~~~~~~ta~~~-~~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~  207 (351)
T cd08285         141 TDEQAVMLPDMMSTGFHG-AELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELA  207 (351)
T ss_pred             CHHHhhhhccchhhHHHH-HHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence            999999998899999997 4778899999999998899999999999999997799999888877653

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=99.98  E-value=3.3e-31  Score=236.18  Aligned_cols=201  Identities=28%  Similarity=0.446  Sum_probs=174.0

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC-C----------CCCCeeeecceeEEEEEe
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-P----------AVFPRILGHEAIGVVESV   85 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~----------~~~p~vlG~e~~G~Vv~v   85 (243)
                      |||+++.+++. +++++++.|.|.++||+||+.++++|++|...+.+... .          ..+|.++|||++|+|+++
T Consensus         1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~v   79 (351)
T cd08233           1 MKAARYHGRKD-IRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEV   79 (351)
T ss_pred             CceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEe
Confidence            68999998876 99999999999999999999999999999887653211 0          136889999999999999


Q ss_pred             CCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCceeecccccceeeeeEEecc
Q 026140           86 GENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI  164 (243)
Q Consensus        86 G~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~  164 (243)
                      |+++++|++||+|+..+..+|+.|.+|..+..++|....+   .|.. .+                   |+|++|+.++.
T Consensus        80 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------------------g~~a~~~~~~~  137 (351)
T cd08233          80 GSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGF---IGLGGGG-------------------GGFAEYVVVPA  137 (351)
T ss_pred             CCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCce---eccCCCC-------------------CceeeEEEech
Confidence            9999999999999999999999999999999999975542   2221 12                   49999999999


Q ss_pred             CcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       165 ~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +.++++|+++++++++.+ .+..++|.++ ...++++|++|+|+|+|++|++++|+|+.+|+++|+++++++++.+++
T Consensus       138 ~~~~~lP~~~~~~~aa~~-~~~~ta~~~l-~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~  213 (351)
T cd08233         138 YHVHKLPDNVPLEEAALV-EPLAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELA  213 (351)
T ss_pred             HHeEECcCCCCHHHhhhc-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            999999999999998876 5778999976 778899999999999999999999999999997799999888887653

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=99.97  E-value=1e-30  Score=231.81  Aligned_cols=204  Identities=32%  Similarity=0.462  Sum_probs=179.2

Q ss_pred             eeeEEeccCCCCeEEEEEecCCC-CCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G   95 (243)
                      |||+++.++++ +.+.+.+.|.| .++||+||+.++++|+.|...+.+.++...+|.++|+|++|+|+++|+++++|++|
T Consensus         1 ~ka~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G   79 (347)
T cd05278           1 MKALVYLGPGK-IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHEFVGEVVEVGSDVKRLKPG   79 (347)
T ss_pred             CceEEEecCCc-eEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCCCCCCceeccceEEEEEEECCCccccCCC
Confidence            58999998887 89999999999 89999999999999999999988876656778999999999999999999999999


Q ss_pred             CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccC--cEEEcCCC
Q 026140           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT  173 (243)
Q Consensus        96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~--~~~~ip~~  173 (243)
                      |+|++.+..+|+.|.+|..+.+.+|+......+.+...+                   |+|++|++++.+  .++++|++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------g~~~~~~~v~~~~~~~~~lP~~  140 (347)
T cd05278          80 DRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRID-------------------GGQAEYVRVPYADMNLAKIPDG  140 (347)
T ss_pred             CEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCC-------------------CeeeEEEEecchhCeEEECCCC
Confidence            999999999999999999999999977654322222222                   499999999987  89999999


Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +++++++.+++.+.|||+++ ...++++|++|||.|+|.+|++++|+|+.+|+.+++++++++++.++
T Consensus       141 ~~~~~aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~  207 (347)
T cd05278         141 LPDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDL  207 (347)
T ss_pred             CCHHHHhhhcchhhheeehh-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            99999999999999999976 67889999999998889999999999999997578888877776554

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=99.97  E-value=1.5e-30  Score=229.79  Aligned_cols=201  Identities=30%  Similarity=0.429  Sum_probs=180.2

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd   96 (243)
                      |||+++.++++++++++.+.|.+.++|++|+++++++|+.|+..+.+..+...+|.++|+|++|+|+++|+++..+++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~   80 (334)
T PRK13771          1 MKAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHEVVGTVEEVGENVKGFKPGD   80 (334)
T ss_pred             CeeEEEcCCCCCcEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCCCCCCeeccccceEEEEEeCCCCccCCCCC
Confidence            68999999998899999999999999999999999999999998887665556788999999999999999998999999


Q ss_pred             EEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCCh
Q 026140           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (243)
Q Consensus        97 ~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~  176 (243)
                      +|++.+..+|+.|.+|..+.+++|.....   .|....                   |+|++|+.++.+.++++|+++++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~~~~~~~~~lp~~~~~  138 (334)
T PRK13771         81 RVASLLYAPDGTCEYCRSGEEAYCKNRLG---YGEELD-------------------GFFAEYAKVKVTSLVKVPPNVSD  138 (334)
T ss_pred             EEEECCCCCCcCChhhcCCCcccCccccc---cccccC-------------------ceeeeeeecchhceEECCCCCCH
Confidence            99998888999999999999999988653   332223                   39999999999999999999999


Q ss_pred             hhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       177 ~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      .+++.+.+.+.++|.++... .+.++++|+|+|+ |.+|++++++++.+|+ +++++++++++.+.
T Consensus       139 ~~~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~-~vi~~~~~~~~~~~  202 (334)
T PRK13771        139 EGAVIVPCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKI  202 (334)
T ss_pred             HHhhcccchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence            99999999999999976554 8899999999998 9999999999999999 89999988877654

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=99.97  E-value=1.4e-30  Score=230.58  Aligned_cols=202  Identities=33%  Similarity=0.482  Sum_probs=179.7

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC---CCCCCeeeecceeEEEEEeCCCCCccC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDGVV   93 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~vlG~e~~G~Vv~vG~~v~~~~   93 (243)
                      |||+++++++.++.+++.+.|.+.++||+||+.++++|+.|...+.+.+.   ...+|.++|+|++|+|+++|+++.+|+
T Consensus         1 ~ka~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~   80 (340)
T cd05284           1 MKAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLK   80 (340)
T ss_pred             CeeeEeccCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCc
Confidence            68999998877799999999999999999999999999999998877553   345688999999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (243)
Q Consensus        94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~  173 (243)
                      +||+|++.+...|+.|.+|+.+.+++|+....   .|...+|                   +|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~P~~  138 (340)
T cd05284          81 EGDPVVVHPPWGCGTCRYCRRGEENYCENARF---PGIGTDG-------------------GFAEYLLVPSRRLVKLPRG  138 (340)
T ss_pred             CCCEEEEcCCCCCCCChHHhCcCcccCCCCcc---cCccCCC-------------------cceeeEEecHHHeEECCCC
Confidence            99999999989999999999999999998875   3433344                   9999999999999999999


Q ss_pred             CChhhhcccchhhHhHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCchhhhc
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEI  241 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~-~~~~~g~~VlI~GaG~vG~~~v~la~~~g-~~~vi~~~~~~~~~~~  241 (243)
                      +++++++.+++.+.|||.++... ..+.++++|||+|+|++|++++++|+.+| . +|+++++++++.+.
T Consensus       139 ls~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~-~v~~~~~~~~~~~~  207 (340)
T cd05284         139 LDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPA-TVIAVDRSEEALKL  207 (340)
T ss_pred             CCHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHH
Confidence            99999999999999999987655 46788999999999889999999999999 6 89999888877654

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=7.5e-30  Score=224.25  Aligned_cols=201  Identities=36%  Similarity=0.555  Sum_probs=178.6

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd   96 (243)
                      |||+++..+++++.+++++.|.+.++||+|+++++++|+.|...+.+.++....|.++|+|++|+|+++|++++.|++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd   80 (332)
T cd08259           1 MKAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHEIVGTVEEVGEGVERFKPGD   80 (332)
T ss_pred             CeEEEEecCCCceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCCCCCCeeccccceEEEEEECCCCccCCCCC
Confidence            68999987566699999999999999999999999999999999888766556788999999999999999999999999


Q ss_pred             EEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCCh
Q 026140           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (243)
Q Consensus        97 ~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~  176 (243)
                      +|++....+|+.|.+|..+.+++|+...   ..|....                   |+|++|++++...++++|+++++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------------------g~~~~~~~v~~~~~~~ip~~~~~  138 (332)
T cd08259          81 RVILYYYIPCGKCEYCLSGEENLCRNRA---EYGEEVD-------------------GGFAEYVKVPERSLVKLPDNVSD  138 (332)
T ss_pred             EEEECCCCCCcCChhhhCCCcccCCCcc---ccccccC-------------------CeeeeEEEechhheEECCCCCCH
Confidence            9999999999999999999999998642   2332223                   49999999999999999999999


Q ss_pred             hhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       177 ~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ++++.+++.+.++|+++.. ..+.++++++|+|+ |++|++++++++.+|+ +|+++.+++++.+.
T Consensus       139 ~~~~~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~~~  202 (332)
T cd08259         139 ESAALAACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKI  202 (332)
T ss_pred             HHHhhhccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHH
Confidence            9999999999999998765 88899999999998 9999999999999999 89998888776543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=8.8e-30  Score=226.17  Aligned_cols=202  Identities=34%  Similarity=0.504  Sum_probs=180.5

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd   96 (243)
                      ||||++.+++.++++++.+.|.+.++||+|++.++++|+.|...+.+..+...+|.++|+|++|.|+++|+++..|++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~~~~~~~Gd   80 (345)
T cd08260           1 MRAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHEFAGVVVEVGEDVSRWRVGD   80 (345)
T ss_pred             CeeEEEecCCCCcEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCCCCCCeeeccceeEEEEEECCCCccCCCCC
Confidence            79999998887899999999999999999999999999999999888766556788999999999999999999999999


Q ss_pred             EEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccC--cEEEcCCCC
Q 026140           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPTV  174 (243)
Q Consensus        97 ~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~--~~~~ip~~~  174 (243)
                      +|+..+..+|++|.+|..+..++|+....   .+...+                   |+|++|+.++..  .++++|+++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~v~~~~~~~~~iP~~~  138 (345)
T cd08260          81 RVTVPFVLGCGTCPYCRAGDSNVCEHQVQ---PGFTHP-------------------GSFAEYVAVPRADVNLVRLPDDV  138 (345)
T ss_pred             EEEECCCCCCCCCccccCcCcccCCCCcc---cccCCC-------------------CcceeEEEcccccCceEECCCCC
Confidence            99987778999999999999999987643   222223                   399999999975  899999999


Q ss_pred             ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ++++++.+.+...+||+++....++.++++|+|+|+|++|++++++|+.+|+ +|+++++++++.+.
T Consensus       139 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~-~vi~~~~~~~~~~~  204 (345)
T cd08260         139 DFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLEL  204 (345)
T ss_pred             CHHHhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHH
Confidence            9999999998999999987777889999999999999999999999999999 89999888877654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=99.97  E-value=6.7e-30  Score=229.03  Aligned_cols=222  Identities=44%  Similarity=0.686  Sum_probs=182.9

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd   96 (243)
                      |||+++.+++.++++++++.|.+.++||+||+.++++|+.|..++.+.++ ..+|.++|+|++|+|+++|+++..|++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd   79 (363)
T cd08279           1 MRAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLP-APLPAVLGHEGAGVVEEVGPGVTGVKPGD   79 (363)
T ss_pred             CeEEEEecCCCCceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCC-CCCCccccccceEEEEEeCCCccccCCCC
Confidence            69999999988899999999999999999999999999999998888655 35678899999999999999999999999


Q ss_pred             EEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCCh
Q 026140           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (243)
Q Consensus        97 ~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~  176 (243)
                      +|+..+..+|++|.+|..+..++|+..... -.|..+++..++. ..|.+.+...+.|+|++|+.++.+.++++|+++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~  157 (363)
T cd08279          80 HVVLSWIPACGTCRYCSRGQPNLCDLGAGI-LGGQLPDGTRRFT-ADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPL  157 (363)
T ss_pred             EEEECCCCCCCCChhhcCCCcccCcccccc-cccccCCCccccc-ccCccccccccCccceeeEEeccccEEECCCCCCh
Confidence            999999999999999999999999865321 0000111100000 00111111122369999999999999999999999


Q ss_pred             hhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       177 ~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ++++++.+.+.++|.++.+..++.+|++|+|+|+|++|++++++++.+|+.+|+++++++++.++
T Consensus       158 ~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~  222 (363)
T cd08279         158 DRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLEL  222 (363)
T ss_pred             HHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHH
Confidence            99999999999999988888889999999999889999999999999999559999888877654

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=6.1e-30  Score=227.89  Aligned_cols=202  Identities=27%  Similarity=0.447  Sum_probs=174.2

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC---------CCCCeeeecceeEEEEEeCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP---------AVFPRILGHEAIGVVESVGE   87 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~---------~~~p~vlG~e~~G~Vv~vG~   87 (243)
                      |||+++++++. +++++.+.|+|.+++|+||++++++|+.|..++.|....         ..+|.++|+|++|+|+++|+
T Consensus         1 mka~~~~~~~~-~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~   79 (350)
T cd08256           1 MRAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGE   79 (350)
T ss_pred             CeeEEEecCCc-eEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCC
Confidence            68999998886 999999999999999999999999999999988775311         14677899999999999999


Q ss_pred             CCC--ccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccC
Q 026140           88 NVD--GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA  165 (243)
Q Consensus        88 ~v~--~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~  165 (243)
                      .++  .|++||+|+..+..+|++|..|..+.+++|.....   .|...                 ...|+|++|+.++.+
T Consensus        80 ~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~-----------------~~~g~~~~~~~~~~~  139 (350)
T cd08256          80 GAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDL---YGFQN-----------------NVNGGMAEYMRFPKE  139 (350)
T ss_pred             CcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccc---eeecc-----------------CCCCcceeeEEcccc
Confidence            999  89999999999999999999999999999975432   22210                 012499999999987


Q ss_pred             -cEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          166 -HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       166 -~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                       .++++|+++++++++.+ ..+.++|.++ +..++++|++|+|.|+|.+|++++++|+++|+..+++++++++|.++
T Consensus       140 ~~~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~  214 (350)
T cd08256         140 AIVHKVPDDIPPEDAILI-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLAL  214 (350)
T ss_pred             cceEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHH
Confidence             57899999999999988 7899999976 78889999999997789999999999999999678888888877654

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=99.97  E-value=5.3e-30  Score=232.01  Aligned_cols=207  Identities=20%  Similarity=0.158  Sum_probs=175.5

Q ss_pred             CCceeeeEEecc--CCC---CeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC----------CCCCCeeeecc
Q 026140           13 KPIQCRAAIATA--PGE---PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF----------PAVFPRILGHE   77 (243)
Q Consensus        13 ~~~~~ka~~~~~--~~~---~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~----------~~~~p~vlG~e   77 (243)
                      .|.+|||+++..  .+.   .+++++++.|.++++||+||+.+++||++|+..+.+...          ....+.++|||
T Consensus         9 ~~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e   88 (393)
T cd08246           9 VPEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSD   88 (393)
T ss_pred             CchhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccc
Confidence            577899999863  222   278889999999999999999999999999988766421          01123589999


Q ss_pred             eeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCceeeccccccee
Q 026140           78 AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSF  156 (243)
Q Consensus        78 ~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~  156 (243)
                      ++|+|+++|+++++|++||+|++.+...|+.|..|..+..++|....+   .|.. .+                   |+|
T Consensus        89 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~~~-------------------g~~  146 (393)
T cd08246          89 ASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRI---WGYETNY-------------------GSF  146 (393)
T ss_pred             eEEEEEEeCCCCCcCCCCCEEEEeccccccCccccccccccccccccc---ccccCCC-------------------Ccc
Confidence            999999999999999999999999999999999999999999976543   3322 12                   499


Q ss_pred             eeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHHh--cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEc
Q 026140          157 SEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT--ANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD  233 (243)
Q Consensus       157 ~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~--~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~  233 (243)
                      ++|++++...++++|+++++++++.+.+.+.|||+++...  +++++|++|+|+|+ |++|++++++|+++|+ ++++++
T Consensus       147 a~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~-~vv~~~  225 (393)
T cd08246         147 AQFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGA-NPVAVV  225 (393)
T ss_pred             eeEEEechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCC-eEEEEe
Confidence            9999999999999999999999999999999999987544  67899999999998 9999999999999999 788888


Q ss_pred             CCchhhhcC
Q 026140          234 VISEKFEIG  242 (243)
Q Consensus       234 ~~~~~~~~~  242 (243)
                      ++++|.+++
T Consensus       226 ~s~~~~~~~  234 (393)
T cd08246         226 SSEEKAEYC  234 (393)
T ss_pred             CCHHHHHHH
Confidence            888887654

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.97  E-value=4.7e-30  Score=225.58  Aligned_cols=181  Identities=22%  Similarity=0.304  Sum_probs=147.8

Q ss_pred             eeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecC-hhhhhhhhCCCCC---CCCCeeeecceeEEEEEeCCCCCc
Q 026140           16 QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLC-HSDVTFWKMKDFP---AVFPRILGHEAIGVVESVGENVDG   91 (243)
Q Consensus        16 ~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~-~~D~~~~~g~~~~---~~~p~vlG~e~~G~Vv~vG~~v~~   91 (243)
                      ++||+++.+++. +++++.+.|.|+++||||||++++|| ++|++++.|.++.   ..+|.++|||++|+|+++|+++ +
T Consensus         1 ~~ka~~~~~~~~-l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~   78 (308)
T TIGR01202         1 KTQAIVLSGPNQ-IELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-G   78 (308)
T ss_pred             CceEEEEeCCCe-EEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-C
Confidence            478999998876 99999999999999999999999996 7999988886543   3579999999999999999998 6


Q ss_pred             cCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcC
Q 026140           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (243)
Q Consensus        92 ~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip  171 (243)
                      |++||+|+..    +..|..|..               |  ..                   |+|+||+.++.+.++++|
T Consensus        79 ~~vGdrV~~~----~~~c~~~~~---------------~--~~-------------------G~~aey~~v~~~~~~~ip  118 (308)
T TIGR01202        79 FRPGDRVFVP----GSNCYEDVR---------------G--LF-------------------GGASKRLVTPASRVCRLD  118 (308)
T ss_pred             CCCCCEEEEe----Ccccccccc---------------c--cC-------------------CcccceEEcCHHHceeCC
Confidence            9999999863    222322210               0  01                   499999999999999999


Q ss_pred             CCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++++++. +++. ...|+|+++.. . ..++++++|+|+|++|++++|+|+++|+..|++++.+++|++.+
T Consensus       119 ~~~~~~~-a~~~-~~~~a~~~~~~-~-~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a  185 (308)
T TIGR01202       119 PALGPQG-ALLA-LAATARHAVAG-A-EVKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGA  185 (308)
T ss_pred             CCCCHHH-Hhhh-HHHHHHHHHHh-c-ccCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhh
Confidence            9999754 4444 57899997643 3 34689999999999999999999999996677888888887654

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=99.97  E-value=1.6e-29  Score=223.57  Aligned_cols=201  Identities=25%  Similarity=0.411  Sum_probs=175.7

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd   96 (243)
                      |||++++++++...+++.+.|.|.++||+|||+++++|++|...+.+..+. ..|.++|||++|+|+++|+++.+|++||
T Consensus         1 mka~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~~G~~v~~~~~Gd   79 (338)
T PRK09422          1 MKAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD-KTGRILGHEGIGIVKEVGPGVTSLKVGD   79 (338)
T ss_pred             CeEEEecCCCCCceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC-CCCccCCcccceEEEEECCCCccCCCCC
Confidence            789999998874448999999999999999999999999999988776543 3467899999999999999999999999


Q ss_pred             EEEeec-cCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCC
Q 026140           97 VVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (243)
Q Consensus        97 ~Vv~~~-~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~  175 (243)
                      +|++.+ ..+|+.|.+|..+.+++|.....   .|...+|                   +|++|+.++.+.++++|++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~~~  137 (338)
T PRK09422         80 RVSIAWFFEGCGHCEYCTTGRETLCRSVKN---AGYTVDG-------------------GMAEQCIVTADYAVKVPEGLD  137 (338)
T ss_pred             EEEEccCCCCCCCChhhcCCCcccCCCccc---cCccccC-------------------cceeEEEEchHHeEeCCCCCC
Confidence            998654 56899999999999999976542   2333334                   999999999999999999999


Q ss_pred             hhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCCchhhhcC
Q 026140          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL-CGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~-~g~~~vi~~~~~~~~~~~~  242 (243)
                      +.+++.+.+.+.|+|+++ ..+++++|++|||+|+|++|++++++|+. +|+ +|+++++++++.+.+
T Consensus       138 ~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~-~v~~~~~~~~~~~~~  203 (338)
T PRK09422        138 PAQASSITCAGVTTYKAI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALA  203 (338)
T ss_pred             HHHeehhhcchhHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCChHHHHHH
Confidence            999999999999999976 77889999999999999999999999998 599 899999988887654

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=99.97  E-value=1.3e-29  Score=225.67  Aligned_cols=203  Identities=29%  Similarity=0.441  Sum_probs=177.7

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC------------CCCCCeeeecceeEEEEE
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF------------PAVFPRILGHEAIGVVES   84 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~------------~~~~p~vlG~e~~G~Vv~   84 (243)
                      |||+++..++.++++++++.|++.++||+|++.++++|++|+..+.+.++            ...+|.++|+|++|+|++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~   80 (350)
T cd08240           1 MKAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVA   80 (350)
T ss_pred             CeeEEeccCCCCceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEe
Confidence            78999998888789999999999999999999999999999998877543            123567899999999999


Q ss_pred             eCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEecc
Q 026140           85 VGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI  164 (243)
Q Consensus        85 vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~  164 (243)
                      +|++++++++||+|++.+...|+.|.+|..+.+++|....+.   |....                   |+|++|+.++.
T Consensus        81 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------------------g~~~~~~~~~~  138 (350)
T cd08240          81 VGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRAL---GIFQD-------------------GGYAEYVIVPH  138 (350)
T ss_pred             eCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCce---eeecc-------------------CcceeeEEecH
Confidence            999999999999999999999999999999999999765432   22122                   48999999999


Q ss_pred             CcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       165 ~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +.++++|+++++.+++.+.+.+.|||+++.......++++|+|+|+|++|++++|+|+.+|+++|++++++++|.+.
T Consensus       139 ~~~~~~p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~  215 (350)
T cd08240         139 SRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEA  215 (350)
T ss_pred             HHeeeCCCCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH
Confidence            99999999999999999999999999987666656689999999889999999999999999778888888877654

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=99.97  E-value=1.6e-29  Score=230.41  Aligned_cols=194  Identities=20%  Similarity=0.239  Sum_probs=157.0

Q ss_pred             ceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhh-hCCCCC------CCCCeeeecceeEEEEEeCC
Q 026140           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW-KMKDFP------AVFPRILGHEAIGVVESVGE   87 (243)
Q Consensus        15 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~-~g~~~~------~~~p~vlG~e~~G~Vv~vG~   87 (243)
                      |+|||+++.++++ ++++++|.|.|.++||+|||.+++||++|++++ .+....      ..+|.++|||++|+|+++|+
T Consensus         1 m~~~a~~~~~~~~-l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~   79 (410)
T cd08238           1 MKTKAWRMYGKGD-LRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGK   79 (410)
T ss_pred             CCcEEEEEEcCCc-eEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCC
Confidence            5689999999986 999999999999999999999999999999976 453211      24688999999999999999


Q ss_pred             CCC-ccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccC-
Q 026140           88 NVD-GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA-  165 (243)
Q Consensus        88 ~v~-~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~-  165 (243)
                      +++ +|++||+|++.+...|+.|..|..              .|...+                   |+|+||++++.+ 
T Consensus        80 ~v~~~~~vGdrV~~~~~~~c~~~~~c~~--------------~g~~~~-------------------G~~aey~~v~~~~  126 (410)
T cd08238          80 KWQGKYKPGQRFVIQPALILPDGPSCPG--------------YSYTYP-------------------GGLATYHIIPNEV  126 (410)
T ss_pred             CccCCCCCCCEEEEcCCcCCCCCCCCCC--------------ccccCC-------------------CcceEEEEecHHh
Confidence            998 699999999988888988887731              122223                   399999999986 


Q ss_pred             ---cEEEcCCCCChhhhccc-chhh-HhHHHHH--------HHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcC--CCeE
Q 026140          166 ---HVVKVDPTVPPNRACLL-SCGV-STGVGAA--------WRTANVEVGSTVVIFGL-GSIGLAVAEGARLCG--ATRI  229 (243)
Q Consensus       166 ---~~~~ip~~~~~~~aa~~-~~~~-~ta~~~l--------~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g--~~~v  229 (243)
                         .++++|+++++++++++ ++.. .+++.++        .+..++++|++|+|+|+ |++|++++|+|+++|  +.+|
T Consensus       127 ~~~~~~~lP~~l~~~~aal~epl~~~~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~V  206 (410)
T cd08238         127 MEQDCLLIYEGDGYAEASLVEPLSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLL  206 (410)
T ss_pred             ccCCeEECCCCCCHHHHhhcchHHHHHHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceE
Confidence               68999999999998865 2111 1233322        24567899999999985 999999999999975  4579


Q ss_pred             EEEcCCchhhhcC
Q 026140          230 IGVDVISEKFEIG  242 (243)
Q Consensus       230 i~~~~~~~~~~~~  242 (243)
                      ++++++++|++++
T Consensus       207 i~~~~~~~r~~~a  219 (410)
T cd08238         207 VVTDVNDERLARA  219 (410)
T ss_pred             EEEcCCHHHHHHH
Confidence            9999999988765

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.97  E-value=3.3e-29  Score=222.25  Aligned_cols=207  Identities=23%  Similarity=0.318  Sum_probs=177.1

Q ss_pred             eeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCCE
Q 026140           18 RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDV   97 (243)
Q Consensus        18 ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~   97 (243)
                      |+|++++.+..+++++++.|.|.++||+||++++++|+.|...+.+......+|.++|||++|+|+++|+++.+|++||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~   80 (337)
T cd05283           1 KGYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEIVGIVVAVGSKVTKFKVGDR   80 (337)
T ss_pred             CceEEecCCCCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCCCCCCcccCcceeeEEEEECCCCcccCCCCE
Confidence            57888988888999999999999999999999999999999998886655567889999999999999999999999999


Q ss_pred             EE-eeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCCh
Q 026140           98 VI-PHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (243)
Q Consensus        98 Vv-~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~  176 (243)
                      |+ .....+|++|.+|.++..++|...... +.|....+              ....|+|++|+.++.+.++++|+++++
T Consensus        81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------------~~~~g~~~~~~~v~~~~~~~lp~~~~~  145 (337)
T cd05283          81 VGVGCQVDSCGTCEQCKSGEEQYCPKGVVT-YNGKYPDG--------------TITQGGYADHIVVDERFVFKIPEGLDS  145 (337)
T ss_pred             EEEecCCCCCCCCccccCCchhcCcchhhc-ccccccCC--------------CcCCCcceeEEEechhheEECCCCCCH
Confidence            97 545668999999999999999876532 11111000              111259999999999999999999999


Q ss_pred             hhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       177 ~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ++++.+.+.+.+||.++ ....+.+|++++|.|+|++|++++++++.+|+ +++++++++++.+.
T Consensus       146 ~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~-~v~~~~~~~~~~~~  208 (337)
T cd05283         146 AAAAPLLCAGITVYSPL-KRNGVGPGKRVGVVGIGGLGHLAVKFAKALGA-EVTAFSRSPSKKED  208 (337)
T ss_pred             HHhhhhhhHHHHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHH
Confidence            99999999999999975 45568999999998889999999999999999 89999988877654

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=99.97  E-value=4.6e-29  Score=224.75  Aligned_cols=211  Identities=27%  Similarity=0.398  Sum_probs=174.7

Q ss_pred             eeeEEeccCCCCeEEEEEecCCC-CCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G   95 (243)
                      ||++++.+++. ++++++|.|.| +++||+|||+++++|+.|+.++.|.++ ..+|.++|||++|+|+++|++++.|++|
T Consensus         1 m~~~~~~~~~~-~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~-~~~p~~~g~e~~G~V~~vG~~v~~~~~G   78 (375)
T cd08282           1 MKAVVYGGPGN-VAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTG-AEPGLVLGHEAMGEVEEVGSAVESLKVG   78 (375)
T ss_pred             CceEEEecCCc-eeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC-CCCCceeccccEEEEEEeCCCCCcCCCC
Confidence            58899988875 99999999996 799999999999999999999988665 3468899999999999999999999999


Q ss_pred             CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccC--cEEEcCCC
Q 026140           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT  173 (243)
Q Consensus        96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~--~~~~ip~~  173 (243)
                      |+|+..+..+|+.|..|+.+..++|...... +.+. ..|....          ....|+|++|+.++.+  .++++|++
T Consensus        79 d~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~-~~~~-~~~~~~~----------~~~~g~~a~y~~v~~~~~~~~~lP~~  146 (375)
T cd08282          79 DRVVVPFNVACGRCRNCKRGLTGVCLTVNPG-RAGG-AYGYVDM----------GPYGGGQAEYLRVPYADFNLLKLPDR  146 (375)
T ss_pred             CEEEEeCCCCCCCCHHHHCcCcccCCCCCcc-cccc-ccccccc----------CCCCCeeeeEEEeecccCcEEECCCC
Confidence            9999999999999999999999999753221 0000 0000000          0001599999999976  89999999


Q ss_pred             CChh---hhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          174 VPPN---RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       174 ~~~~---~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++++   +++.+...+.++|+++ ...++.+|++|+|.|+|++|++++|+|+++|+.+|++++++++|.+++
T Consensus       147 ~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~  217 (375)
T cd08282         147 DGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLA  217 (375)
T ss_pred             CChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            9998   5677787899999986 788899999999998899999999999999986788898888877653

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=99.97  E-value=4.3e-29  Score=221.78  Aligned_cols=203  Identities=28%  Similarity=0.403  Sum_probs=176.8

Q ss_pred             eeeEEeccCCCCeEEEEEecCCC-CCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G   95 (243)
                      |||+++.+++. +++++.+.|+| .++||+|+++++++|+.|..++.|.++...+|.++|||++|+|+++|+++.++++|
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~G   79 (345)
T cd08286           1 MKALVYHGPGK-ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVTPGRILGHEGVGVVEEVGSAVTNFKVG   79 (345)
T ss_pred             CceEEEecCCc-eeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCCCCCCceecccceEEEEEeccCccccCCC
Confidence            68999998887 99999999986 79999999999999999999998876555568899999999999999999999999


Q ss_pred             CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccC--cEEEcCCC
Q 026140           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT  173 (243)
Q Consensus        96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~--~~~~ip~~  173 (243)
                      |+|++.+..+|+.|.+|..+..+.|......  .|...+                   |+|++|+.++..  .++++|++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------------------g~~~~~~~v~~~~~~~~~lp~~  138 (345)
T cd08286          80 DRVLISCISSCGTCGYCRKGLYSHCESGGWI--LGNLID-------------------GTQAEYVRIPHADNSLYKLPEG  138 (345)
T ss_pred             CEEEECCcCCCCCChHHHCcCcccCCCcccc--cccccC-------------------CeeeeEEEcccccCceEECCCC
Confidence            9999998889999999999988888654321  121122                   499999999987  89999999


Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ++..+++.+.+.+.++|.++....++.+|++|+|.|+|.+|.+++|+|+.+|+.+|++++++++|.++
T Consensus       139 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~  206 (345)
T cd08286         139 VDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEV  206 (345)
T ss_pred             CCHHHhhhccchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH
Confidence            99999999998999999877777889999999999889999999999999994489998888777654

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.97  E-value=7.4e-30  Score=212.07  Aligned_cols=181  Identities=28%  Similarity=0.319  Sum_probs=166.1

Q ss_pred             CCceeeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCC
Q 026140           13 KPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD   90 (243)
Q Consensus        13 ~~~~~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~   90 (243)
                      .|+..|.+++++.|..  +++++.|.|+|+++|++||-.|+|+|..|..+++|.+.+...|+++|.|.+|+|+++|++++
T Consensus         5 ~p~~~k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~~~plPytpGmEaaGvVvAvG~gvt   84 (336)
T KOG1197|consen    5 SPPLLKCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYDPAPLPYTPGMEAAGVVVAVGEGVT   84 (336)
T ss_pred             CCchheEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccCCCCCCcCCCcccceEEEEecCCcc
Confidence            4677889999998875  77889999999999999999999999999999999987778999999999999999999999


Q ss_pred             ccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEc
Q 026140           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (243)
Q Consensus        91 ~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i  170 (243)
                      ++++||||+...                              ..                   |.|+|+..+|...++++
T Consensus        85 drkvGDrVayl~------------------------------~~-------------------g~yaee~~vP~~kv~~v  115 (336)
T KOG1197|consen   85 DRKVGDRVAYLN------------------------------PF-------------------GAYAEEVTVPSVKVFKV  115 (336)
T ss_pred             ccccccEEEEec------------------------------cc-------------------hhhheeccccceeeccC
Confidence            999999996321                              11                   49999999999999999


Q ss_pred             CCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcCC
Q 026140          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGE  243 (243)
Q Consensus       171 p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~~  243 (243)
                      |+.+++++||++.+...|||..+.+..++++|++|||+.| |++|++++|++++.|+ .+|++.+.++|.+.+|
T Consensus       116 pe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a-~tI~~asTaeK~~~ak  188 (336)
T KOG1197|consen  116 PEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGA-HTIATASTAEKHEIAK  188 (336)
T ss_pred             CcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCc-EEEEEeccHHHHHHHH
Confidence            9999999999999999999998889999999999999976 9999999999999999 8999999999988764

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=99.97  E-value=4.4e-29  Score=221.28  Aligned_cols=204  Identities=27%  Similarity=0.429  Sum_probs=173.4

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCC-CCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPN-SHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~-~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G   95 (243)
                      |||+++.+++. +++++++.|.|. ++||+||+.++++|+.|..++.+.++ ..+|.++|+|++|+|+++|++++++++|
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~G   78 (344)
T cd08284           1 MKAVVFKGPGD-VRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIP-STPGFVLGHEFVGEVVEVGPEVRTLKVG   78 (344)
T ss_pred             CeeEEEecCCC-ceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCC-CCCCcccccceEEEEEeeCCCccccCCC
Confidence            68999988765 999999999984 99999999999999999988877654 3457889999999999999999999999


Q ss_pred             CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccC--cEEEcCCC
Q 026140           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT  173 (243)
Q Consensus        96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~--~~~~ip~~  173 (243)
                      |+|++.+..+|+.|.+|..+.+++|+.....++.+..                  ...|+|++|++++.+  .++++|++
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~g~~~~~~~v~~~~~~~~~~p~~  140 (344)
T cd08284          79 DRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSP------------------NLDGAQAEYVRVPFADGTLLKLPDG  140 (344)
T ss_pred             CEEEEcccCCCCCChHHhCcCcccCCCCccccccccC------------------CCCCceeEEEEcccccCceEECCCC
Confidence            9999988899999999999999999764321000100                  012499999999865  99999999


Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +++++++.+++.+.|||+++. ..+..+|++|+|+|+|.+|++++++|+.+|+.++++++++++|.++
T Consensus       141 l~~~~a~~l~~~~~ta~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~  207 (344)
T cd08284         141 LSDEAALLLGDILPTGYFGAK-RAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLER  207 (344)
T ss_pred             CCHHHhhhhcCchHHHHhhhH-hcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHH
Confidence            999999999999999999764 5788999999999889999999999999997578888877777654

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.97  E-value=6.4e-29  Score=222.67  Aligned_cols=203  Identities=31%  Similarity=0.464  Sum_probs=168.7

Q ss_pred             CceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC---CCCCCeeeecceeEEEEEeCCCCC
Q 026140           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVD   90 (243)
Q Consensus        14 ~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~vlG~e~~G~Vv~vG~~v~   90 (243)
                      ..+++++++..+.. +++++.+.|.|.++||+||++++++|++|..++.+...   ....|.++|||++|+|+++|++++
T Consensus        15 ~~~~~~~~~~~~~~-l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   93 (364)
T PLN02702         15 EEENMAAWLVGVNT-LKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVK   93 (364)
T ss_pred             ccccceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCC
Confidence            34566666666665 88889988889999999999999999999998876321   123577899999999999999999


Q ss_pred             ccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCceeecccccceeeeeEEeccCcEEE
Q 026140           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (243)
Q Consensus        91 ~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~  169 (243)
                      +|++||+|++.+..+|++|..|+.+.+++|++..+   .+.. .+                   |+|++|+.++.+.+++
T Consensus        94 ~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~---~~~~~~~-------------------g~~~~y~~v~~~~~~~  151 (364)
T PLN02702         94 HLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKF---FATPPVH-------------------GSLANQVVHPADLCFK  151 (364)
T ss_pred             CCCCCCEEEEcCCCCCCCCcchhCcCcccCCCccc---cCCCCCC-------------------CcccceEEcchHHeEE
Confidence            99999999999999999999999999999987432   2211 12                   3999999999999999


Q ss_pred             cCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       170 ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +|++++++++++.. .+.++|.++ ...++.+|++|+|+|+|++|++++++|+.+|+..+++++++++|.++
T Consensus       152 ~P~~l~~~~aa~~~-~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~  221 (364)
T PLN02702        152 LPENVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSV  221 (364)
T ss_pred             CCCCCCHHHHhhhh-HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence            99999999887532 455577765 67888999999999889999999999999999668888888777654

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.97  E-value=5.9e-29  Score=219.20  Aligned_cols=202  Identities=29%  Similarity=0.451  Sum_probs=178.4

Q ss_pred             eeeEEeccCCC----CeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCcc
Q 026140           17 CRAAIATAPGE----PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGV   92 (243)
Q Consensus        17 ~ka~~~~~~~~----~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~   92 (243)
                      |||+++.+++.    ++++++.+.|.+.++||+||+.++++|++|...+.|..+....|.++|||++|+|+++|+++.+|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~   80 (329)
T cd08298           1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLIPGHEIVGRVEAVGPGVTRF   80 (329)
T ss_pred             CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCCCCCCccccccccEEEEEECCCCCCC
Confidence            68999998883    48888888888999999999999999999999988866545568899999999999999999999


Q ss_pred             CCCCEEEeec-cCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcC
Q 026140           93 VEGDVVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (243)
Q Consensus        93 ~~Gd~Vv~~~-~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip  171 (243)
                      ++||+|++.+ ..+|+.|.+|..+.+++|+...+   .|...+|                   +|++|++++...++++|
T Consensus        81 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp  138 (329)
T cd08298          81 SVGDRVGVPWLGSTCGECRYCRSGRENLCDNARF---TGYTVDG-------------------GYAEYMVADERFAYPIP  138 (329)
T ss_pred             cCCCEEEEeccCCCCCCChhHhCcChhhCCCccc---cccccCC-------------------ceEEEEEecchhEEECC
Confidence            9999997643 46899999999999999987764   3433333                   89999999999999999


Q ss_pred             CCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++++.+++.+.+.+.++|+++ ..++++++++++|+|+|++|++++++++..|+ +|+++++++++.+.+
T Consensus       139 ~~~~~~~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~~~~~~~~~~~  207 (329)
T cd08298         139 EDYDDEEAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELA  207 (329)
T ss_pred             CCCCHHHhhHhhhhhHHHHHHH-HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEcCChHHHHHH
Confidence            9999999999999999999986 88999999999999989999999999999999 899999888776653

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=99.97  E-value=4.5e-29  Score=226.51  Aligned_cols=207  Identities=23%  Similarity=0.203  Sum_probs=174.1

Q ss_pred             CCceeeeEEecc--CCCC---eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC----------CCCCC-eeeec
Q 026140           13 KPIQCRAAIATA--PGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF----------PAVFP-RILGH   76 (243)
Q Consensus        13 ~~~~~ka~~~~~--~~~~---~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~----------~~~~p-~vlG~   76 (243)
                      .|.+||||++..  ++++   +++++++.|.|.++||+||++++++|+.|.+...+.+.          ....| .++||
T Consensus         4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~   83 (398)
T TIGR01751         4 VPETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGS   83 (398)
T ss_pred             cchhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceeccc
Confidence            457799999965  5543   88899999999999999999999999999876654321          11223 37999


Q ss_pred             ceeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCceeecccccce
Q 026140           77 EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSS  155 (243)
Q Consensus        77 e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~  155 (243)
                      |++|+|+++|+++++|++||+|++.....|++|.+|+.+++++|.....   .|.. .+                   |+
T Consensus        84 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~-------------------g~  141 (398)
T TIGR01751        84 DASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRI---WGYETNF-------------------GS  141 (398)
T ss_pred             ceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCcccccccccc---ccccCCC-------------------cc
Confidence            9999999999999999999999999999999999999999999965432   2211 12                   49


Q ss_pred             eeeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHH--hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEE
Q 026140          156 FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR--TANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV  232 (243)
Q Consensus       156 ~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~--~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~  232 (243)
                      |++|++++...++++|+++++++++.+.+...++|+++..  ..++.+|++|+|+|+ |++|++++++++++|+ +++++
T Consensus       142 ~ae~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~-~vi~~  220 (398)
T TIGR01751       142 FAEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGG-NPVAV  220 (398)
T ss_pred             ceEEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-eEEEE
Confidence            9999999999999999999999999999999999998654  467899999999998 9999999999999999 78888


Q ss_pred             cCCchhhhcC
Q 026140          233 DVISEKFEIG  242 (243)
Q Consensus       233 ~~~~~~~~~~  242 (243)
                      ++++++.+.+
T Consensus       221 ~~~~~~~~~~  230 (398)
T TIGR01751       221 VSSPEKAEYC  230 (398)
T ss_pred             cCCHHHHHHH
Confidence            8887776543

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=1.1e-28  Score=216.85  Aligned_cols=194  Identities=25%  Similarity=0.422  Sum_probs=167.8

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd   96 (243)
                      |||+++.++++ +++++.+.|+|.++||+||+.++++|+.|..++.+.++   .|.++|+|++|+|+++|++   +++||
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~---~~~~~G~e~~G~Vv~~G~~---~~~G~   73 (319)
T cd08242           1 MKALVLDGGLD-LRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP---FPGVPGHEFVGIVEEGPEA---ELVGK   73 (319)
T ss_pred             CeeEEEeCCCc-EEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC---CCCccCceEEEEEEEeCCC---CCCCC
Confidence            68999998764 99999999999999999999999999999998887643   5778999999999999988   67999


Q ss_pred             EEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCC-CCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCC
Q 026140           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM-PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (243)
Q Consensus        97 ~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~-~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~  175 (243)
                      +|...+..+|+.|.+|..+..++|...+.   .+. ..+                   |+|++|++++.+.++++|++++
T Consensus        74 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------------------g~~~~~~~v~~~~~~~lP~~~~  131 (319)
T cd08242          74 RVVGEINIACGRCEYCRRGLYTHCPNRTV---LGIVDRD-------------------GAFAEYLTLPLENLHVVPDLVP  131 (319)
T ss_pred             eEEECCCcCCCCChhhhCcCcccCCCCcc---cCccCCC-------------------CceEEEEEechHHeEECcCCCC
Confidence            99999999999999999999988877553   222 123                   3999999999999999999999


Q ss_pred             hhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++++.+ ....++|. +....++++|++|+|+|+|.+|++++|+|+.+|+ +|+++++++++.+.+
T Consensus       132 ~~~aa~~-~~~~~~~~-~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~  195 (319)
T cd08242         132 DEQAVFA-EPLAAALE-ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALA  195 (319)
T ss_pred             HHHhhhh-hHHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHH
Confidence            9888764 35556665 4577889999999999889999999999999999 799999888887654

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=1.4e-28  Score=220.74  Aligned_cols=223  Identities=32%  Similarity=0.494  Sum_probs=180.7

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCc---cC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG---VV   93 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~---~~   93 (243)
                      ||||++.+++.++.+++.+.|.+.++||+||+.++++|+.|..++.+.++. .+|.++|||++|+|+.+|+++.+   |+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~-~~p~~~g~e~~G~v~~vG~~~~~~~~~~   79 (367)
T cd08263           1 MKAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPF-PPPFVLGHEISGEVVEVGPNVENPYGLS   79 (367)
T ss_pred             CeeEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCC-CCCcccccccceEEEEeCCCCCCCCcCC
Confidence            689999998777899999999999999999999999999999988876643 67889999999999999999988   99


Q ss_pred             CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCC-CCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCC
Q 026140           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (243)
Q Consensus        94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g-~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~  172 (243)
                      +||+|++.+..+|+.|.+|..+.+++|+...+-..++ ...+|..++....+...+ ....|+|++|+.++.+.++++|+
T Consensus        80 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~P~  158 (367)
T cd08263          80 VGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVY-MYSMGGLAEYAVVPATALAPLPE  158 (367)
T ss_pred             CCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCccc-cccCCcceeEEEechhhEEECCC
Confidence            9999999888899999999999999998754110011 111111110000000000 01136999999999999999999


Q ss_pred             CCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       173 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ++++.+++.+.+.+.|||.++.+...+.++++|+|+|+|++|++++++|+.+|+..++++++++++.+.
T Consensus       159 ~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~  227 (367)
T cd08263         159 SLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAK  227 (367)
T ss_pred             CCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH
Confidence            999999999999999999988777778899999999889999999999999999548888888777654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=1.5e-28  Score=216.32  Aligned_cols=193  Identities=28%  Similarity=0.375  Sum_probs=168.1

Q ss_pred             eeeEEeccCC-CCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140           17 CRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (243)
Q Consensus        17 ~ka~~~~~~~-~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G   95 (243)
                      ||++++..++ +.+++.+.+.|+++++||+||+.++++|++|...+.+. ....+|.++|||++|+|+.+|++++.|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~-~~~~~~~~~g~e~~G~v~~vG~~v~~~~~G   79 (325)
T cd08264           1 MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAV-KVKPMPHIPGAEFAGVVEEVGDHVKGVKKG   79 (325)
T ss_pred             CeeEEeccCCCCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCC-CCCCCCeecccceeEEEEEECCCCCCCCCC
Confidence            6899998776 34888888888899999999999999999999887642 222357789999999999999999999999


Q ss_pred             CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCC
Q 026140           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (243)
Q Consensus        96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~  175 (243)
                      |+|++.+...|+.|.+|..+.+++|+...+   .+....                   |+|++|++++.+.++++|++++
T Consensus        80 d~V~~~~~~~~~~c~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~v~~~~~~~~p~~~~  137 (325)
T cd08264          80 DRVVVYNRVFDGTCDMCLSGNEMLCRNGGI---IGVVSN-------------------GGYAEYIVVPEKNLFKIPDSIS  137 (325)
T ss_pred             CEEEECCCcCCCCChhhcCCCccccCccce---eeccCC-------------------CceeeEEEcCHHHceeCCCCCC
Confidence            999999989999999999999999986542   333223                   3999999999999999999999


Q ss_pred             hhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 026140          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  234 (243)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~  234 (243)
                      +++++.+.+.+.++|+++. ..++++|++|+|+|+ |++|++++++|+++|+ +|+++++
T Consensus       138 ~~~~~~~~~~~~~a~~~l~-~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~-~v~~~~~  195 (325)
T cd08264         138 DELAASLPVAALTAYHALK-TAGLGPGETVVVFGASGNTGIFAVQLAKMMGA-EVIAVSR  195 (325)
T ss_pred             HHHhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeH
Confidence            9999999999999999764 588999999999998 9999999999999999 7888764

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=1.4e-28  Score=217.78  Aligned_cols=198  Identities=35%  Similarity=0.574  Sum_probs=172.5

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd   96 (243)
                      |||+++++++. +++.+++.|.+.++||+|+|.++++|+.|..++.+..+...+|.++|+|++|+|+.+|+++++|++||
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd   79 (337)
T cd08261           1 MKALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHELSGEVVEVGEGVAGLKVGD   79 (337)
T ss_pred             CeEEEEeCCCc-eEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCcCCCCcccccccEEEEEEeCCCCCCCCCCC
Confidence            68999998875 89999999999999999999999999999998887665555678999999999999999999999999


Q ss_pred             EEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCCh
Q 026140           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (243)
Q Consensus        97 ~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~  176 (243)
                      +|+..+..+|+.|..|+.+..++|++.+.   .+....                   |+|++|+.++.+ ++++|+++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~v~v~~~-~~~~p~~~~~  136 (337)
T cd08261          80 RVVVDPYISCGECYACRKGRPNCCENLQV---LGVHRD-------------------GGFAEYIVVPAD-ALLVPEGLSL  136 (337)
T ss_pred             EEEECCCCCCCCChhhhCcCcccCCCCCe---eeecCC-------------------CcceeEEEechh-eEECCCCCCH
Confidence            99998888999999999999999964432   111112                   499999999999 9999999999


Q ss_pred             hhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       177 ~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ++++.+ ..+.+++.++ +..++.+|++|||+|+|.+|.+++++|+.+|+ +|+++.+++++.++
T Consensus       137 ~~aa~~-~~~~~a~~~~-~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~  198 (337)
T cd08261         137 DQAALV-EPLAIGAHAV-RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEF  198 (337)
T ss_pred             HHhhhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHH
Confidence            998877 4778888865 77889999999999889999999999999999 89999888777654

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=2.7e-28  Score=214.32  Aligned_cols=202  Identities=25%  Similarity=0.363  Sum_probs=175.3

Q ss_pred             eeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccC
Q 026140           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (243)
Q Consensus        17 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~   93 (243)
                      |||+++...+.+  +++.+.+.|.+.+++|+|+++++++|++|..++.|.+.. ..+|.++|||++|+|+.+|+++..|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (342)
T cd08266           1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVK   80 (342)
T ss_pred             CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCC
Confidence            689998844332  777788888889999999999999999999988876532 35678999999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (243)
Q Consensus        94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~  173 (243)
                      +||+|++.+..+|+.|.+|..+.+++|+....   .|....                   |+|++|++++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~-------------------g~~~~~~~~~~~~~~~~p~~  138 (342)
T cd08266          81 PGQRVVIYPGISCGRCEYCLAGRENLCAQYGI---LGEHVD-------------------GGYAEYVAVPARNLLPIPDN  138 (342)
T ss_pred             CCCEEEEccccccccchhhccccccccccccc---cccccC-------------------cceeEEEEechHHceeCCCC
Confidence            99999999999999999999999999986432   333333                   38999999999999999999


Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +++.+++.+++.+.++|.++.+..++.++++++|+|+ +.+|++++++++.+|+ +++.+++++++.+.
T Consensus       139 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~~~~~~~~~~~  206 (342)
T cd08266         139 LSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLER  206 (342)
T ss_pred             CCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence            9999999999899999998777888999999999998 7999999999999999 89999888777654

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.96  E-value=3.1e-28  Score=215.80  Aligned_cols=200  Identities=31%  Similarity=0.453  Sum_probs=173.6

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd   96 (243)
                      |||+++++++. +++++.+.|.+.+++|+|+++++++|+.|..++.+.+.....|.++|+|++|+|+++|++++.|++||
T Consensus         1 ~~~~~~~~~~~-~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~~~~~~~~~g~~~~G~V~~~G~~v~~~~~Gd   79 (343)
T cd08235           1 MKAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHEIAGEIVEVGDGVTGFKVGD   79 (343)
T ss_pred             CeEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCccCCCCcccccceEEEEEeeCCCCCCCCCCC
Confidence            58999998875 99999999999999999999999999999998877653334577899999999999999999999999


Q ss_pred             EEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCc-----EEEcC
Q 026140           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH-----VVKVD  171 (243)
Q Consensus        97 ~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~-----~~~ip  171 (243)
                      +|++.++.+|+.|..|..++.++|+....   .|...+                   |+|++|++++.+.     ++++|
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~v~v~~~~~~~~~~~~lP  137 (343)
T cd08235          80 RVFVAPHVPCGECHYCLRGNENMCPNYKK---FGNLYD-------------------GGFAEYVRVPAWAVKRGGVLKLP  137 (343)
T ss_pred             EEEEccCCCCCCChHHHCcCcccCCCcce---eccCCC-------------------CcceeeEEecccccccccEEECC
Confidence            99999999999999999999999977543   232223                   3999999999998     99999


Q ss_pred             CCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +++++.+++.+ +.+.++|+++ ...++.+|++|+|+|+|.+|++++++|+.+|++.++++.+++++.+.
T Consensus       138 ~~~~~~~aa~~-~~~~~a~~~l-~~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~  205 (343)
T cd08235         138 DNVSFEEAALV-EPLACCINAQ-RKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEF  205 (343)
T ss_pred             CCCCHHHHHhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHH
Confidence            99999998876 6889999976 45589999999999889999999999999999438888888777654

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=99.96  E-value=1.8e-28  Score=217.51  Aligned_cols=200  Identities=28%  Similarity=0.437  Sum_probs=168.3

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCC---CCCCCCeeeecceeEEEEEeCCCCCccC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFPRILGHEAIGVVESVGENVDGVV   93 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~~~~p~vlG~e~~G~Vv~vG~~v~~~~   93 (243)
                      ||++++.++++.+++.+.|.|.|.++||+||++++++|++|..++.+..   ....+|.++|||++|+|+++|++++.|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~   80 (341)
T PRK05396          1 MKALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFK   80 (341)
T ss_pred             CceEEEecCCCceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCC
Confidence            6899999998779999999999999999999999999999998776532   1224677899999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (243)
Q Consensus        94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~  173 (243)
                      +||+|+..+..+|+.|.+|..+.++||+....   .+...+                   |+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~v~~~~~~~iP~~  138 (341)
T PRK05396         81 VGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKG---VGVNRP-------------------GAFAEYLVIPAFNVWKIPDD  138 (341)
T ss_pred             CCCEEEECCCCCCCCChhhhCcChhhCCCcce---eeecCC-------------------CcceeeEEechHHeEECcCC
Confidence            99999999999999999999999999976432   222223                   39999999999999999999


Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +++.+++.+ ..+.+++.++..  ...+|++|+|.|+|++|++++++|+.+|+..|+++++++++.++
T Consensus       139 l~~~~~~~~-~~~~~~~~~~~~--~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~  203 (341)
T PRK05396        139 IPDDLAAIF-DPFGNAVHTALS--FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLEL  203 (341)
T ss_pred             CCHHHhHhh-hHHHHHHHHHHc--CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHH
Confidence            999888754 466666665432  34689999999889999999999999999668888877777654

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.96  E-value=2.9e-28  Score=214.84  Aligned_cols=202  Identities=34%  Similarity=0.495  Sum_probs=178.6

Q ss_pred             eeeEEeccCCCC-eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC-CCCCCeeeecceeEEEEEeCCCCCccCC
Q 026140           17 CRAAIATAPGEP-LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGVVE   94 (243)
Q Consensus        17 ~ka~~~~~~~~~-~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~vlG~e~~G~Vv~vG~~v~~~~~   94 (243)
                      ||++++..++++ +.+++.+.|.+.+++|+|++.++++|+.|...+.+.++ ...+|.++|+|++|+|+.+|+++.+|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~~   80 (338)
T cd08254           1 MKAWRFHKGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFKV   80 (338)
T ss_pred             CeeEEEecCCCCceEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCCC
Confidence            689999999987 57778888888999999999999999999998887654 3456789999999999999999999999


Q ss_pred             CCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC
Q 026140           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (243)
Q Consensus        95 Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~  174 (243)
                      ||+|+..+..+|+.|.+|..+..++|.....   .|....                   |+|++|+.++.+.++++|+++
T Consensus        81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~~~~~~~~~lp~~~  138 (338)
T cd08254          81 GDRVAVPAVIPCGACALCRRGRGNLCLNQGM---PGLGID-------------------GGFAEYIVVPARALVPVPDGV  138 (338)
T ss_pred             CCEEEECCCCCCCCChhhhCcCcccCCCCCc---cccccC-------------------CcceeeEEechHHeEECCCCC
Confidence            9999999999999999999999999955443   232223                   399999999999999999999


Q ss_pred             ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ++.+++.+...+.+||.++....++.++++|||.|+|.+|++++++|+.+|+ +|+++++++++.+.
T Consensus       139 ~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~  204 (338)
T cd08254         139 PFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLEL  204 (338)
T ss_pred             CHHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHH
Confidence            9999999999999999988777889999999998889999999999999999 79999988877654

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.96  E-value=3e-28  Score=214.79  Aligned_cols=200  Identities=30%  Similarity=0.435  Sum_probs=175.5

Q ss_pred             eeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCCE
Q 026140           18 RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDV   97 (243)
Q Consensus        18 ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~   97 (243)
                      ||+++.+++..+++++.+.|.+.+++|+|++.++++|+.|...+.+......+|.++|+|++|+|+.+|+++++|++||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd~   80 (330)
T cd08245           1 KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHEIVGEVVEVGAGVEGRKVGDR   80 (330)
T ss_pred             CeEEEecCCCCceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCCCCCCcccCccceEEEEEECCCCcccccCCE
Confidence            68899999656999999999999999999999999999999998876544456889999999999999999999999999


Q ss_pred             EEeecc-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCCh
Q 026140           98 VIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (243)
Q Consensus        98 Vv~~~~-~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~  176 (243)
                      |++.+. .+|++|.+|..+..++|+...+   .+....                   |+|++|+.++.+.++++|+++++
T Consensus        81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~v~~~~~~~~p~~~~~  138 (330)
T cd08245          81 VGVGWLVGSCGRCEYCRRGLENLCQKAVN---TGYTTQ-------------------GGYAEYMVADAEYTVLLPDGLPL  138 (330)
T ss_pred             EEEccccCCCCCChhhhCcCcccCcCccc---cCcccC-------------------CccccEEEEcHHHeEECCCCCCH
Confidence            987554 6799999999999999988653   232222                   38999999999999999999999


Q ss_pred             hhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       177 ~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      .+++.+.+...++|.++. ...+.++++|+|+|+|.+|++++++|+.+|+ +|+++++++++.+.
T Consensus       139 ~~~~~l~~~~~ta~~~l~-~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~  201 (330)
T cd08245         139 AQAAPLLCAGITVYSALR-DAGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKREL  201 (330)
T ss_pred             HHhhhhhhhHHHHHHHHH-hhCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            999998889999999764 4789999999999888899999999999999 89999988877654

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.96  E-value=5.2e-28  Score=214.67  Aligned_cols=200  Identities=32%  Similarity=0.425  Sum_probs=168.2

Q ss_pred             eeeEEeccCCCCeEEEEEecCCC-CCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G   95 (243)
                      |||+++.+++. +++++.+.|.| +++||+||+.++++|++|...+.|.++. ..|.++|||++|+|+++|+++.++++|
T Consensus         1 m~~~~~~~~~~-~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~vG~~v~~~~~G   78 (345)
T cd08287           1 MRATVIHGPGD-IRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPT-RAPAPIGHEFVGVVEEVGSEVTSVKPG   78 (345)
T ss_pred             CceeEEecCCc-eeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCCC-CCCcccccceEEEEEEeCCCCCccCCC
Confidence            68999998876 99999999996 8999999999999999999888776543 457899999999999999999999999


Q ss_pred             CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccC--cEEEcCCC
Q 026140           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT  173 (243)
Q Consensus        96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~--~~~~ip~~  173 (243)
                      |+|++....+|+.|..|..+..++|....+   .+...+|                   +|++|++++.+  .++++|++
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~~lP~~  136 (345)
T cd08287          79 DFVIAPFAISDGTCPFCRAGFTTSCVHGGF---WGAFVDG-------------------GQGEYVRVPLADGTLVKVPGS  136 (345)
T ss_pred             CEEEeccccCCCCChhhhCcCcccCCCCCc---ccCCCCC-------------------ceEEEEEcchhhCceEECCCC
Confidence            999886677899999999999999986543   3333334                   99999999875  99999999


Q ss_pred             CChhhhc-----ccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          174 VPPNRAC-----LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       174 ~~~~~aa-----~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +++..+.     .+...+.++|+++ ...+.++|++|+|.|+|++|++++++|+++|+..++++++++++.++
T Consensus       137 l~~~~~~~~~~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~  208 (345)
T cd08287         137 PSDDEDLLPSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQAL  208 (345)
T ss_pred             CChhhhhhhhhHhhhcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence            9872221     2225688898875 57789999999999889999999999999999668888888766654

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.96  E-value=9e-28  Score=211.93  Aligned_cols=199  Identities=31%  Similarity=0.504  Sum_probs=174.3

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd   96 (243)
                      |||+++.+++. +++.+.+.|.+.++||+||++++++|+.|...+.|.++. .+|.++|+|++|+|+.+|+++++|++||
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~-~~p~~~g~~~~G~v~~vG~~v~~~~~Gd   78 (334)
T cd08234           1 MKALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA-APPLVPGHEFAGVVVAVGSKVTGFKVGD   78 (334)
T ss_pred             CeeEEecCCCc-eEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC-CCCcccccceEEEEEEeCCCCCCCCCCC
Confidence            68999998885 999999999999999999999999999999988887543 3778999999999999999999999999


Q ss_pred             EEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCCh
Q 026140           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (243)
Q Consensus        97 ~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~  176 (243)
                      +|++.+...|+.|.+|..+++++|+....   .|...+                   |+|++|++++.+.++++|+++++
T Consensus        79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~v~~~~~~~lP~~~~~  136 (334)
T cd08234          79 RVAVDPNIYCGECFYCRRGRPNLCENLTA---VGVTRN-------------------GGFAEYVVVPAKQVYKIPDNLSF  136 (334)
T ss_pred             EEEEcCCcCCCCCccccCcChhhCCCcce---eccCCC-------------------CcceeEEEecHHHcEECcCCCCH
Confidence            99999999999999999999988876531   222223                   39999999999999999999999


Q ss_pred             hhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       177 ~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      .+++.+ +.+.+++.++ +..++.+|++|+|+|+|.+|.+++++|+++|++.|+++++++++.+.
T Consensus       137 ~~aa~~-~~~~~a~~~l-~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~  199 (334)
T cd08234         137 EEAALA-EPLSCAVHGL-DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLEL  199 (334)
T ss_pred             HHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHH
Confidence            998766 6788888876 78889999999999889999999999999999448888888877654

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=8.4e-28  Score=217.22  Aligned_cols=200  Identities=26%  Similarity=0.442  Sum_probs=166.6

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCC------C-CCCCCeeeecceeEEEEEeCCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD------F-PAVFPRILGHEAIGVVESVGENV   89 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~------~-~~~~p~vlG~e~~G~Vv~vG~~v   89 (243)
                      +.+.++..+  .+++++++.|.++++||+||++++++|++|+.++.+..      + ...+|.++|||++|+|+++|+++
T Consensus        29 ~~~~~~~~~--~~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v  106 (384)
T cd08265          29 LGSKVWRYP--ELRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKNV  106 (384)
T ss_pred             ceeEEEeCC--CEEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCCC
Confidence            444444433  39999999999999999999999999999998876321      1 13467899999999999999999


Q ss_pred             CccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEE
Q 026140           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (243)
Q Consensus        90 ~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~  169 (243)
                      +.|++||+|++.+..+|+.|..|..++.++|+.+..   .|...+                   |+|++|+.++.+.+++
T Consensus       107 ~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~~-------------------g~~~~~v~v~~~~~~~  164 (384)
T cd08265         107 KNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKE---LGFSAD-------------------GAFAEYIAVNARYAWE  164 (384)
T ss_pred             CCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcce---eeecCC-------------------CcceeeEEechHHeEE
Confidence            999999999999999999999999999999986553   333223                   3999999999999999


Q ss_pred             cCCC-------CChhhhcccchhhHhHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          170 VDPT-------VPPNRACLLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       170 ip~~-------~~~~~aa~~~~~~~ta~~~l~~~-~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +|++       +++. ++.+...+.++|+++... .++++|++|+|+|+|++|++++++|+.+|+.+|++++++++|.++
T Consensus       165 lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~  243 (384)
T cd08265         165 INELREIYSEDKAFE-AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNL  243 (384)
T ss_pred             CCccccccccCCCHH-HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHH
Confidence            9986       3445 455556889999987655 689999999999889999999999999999779999988877654

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=99.96  E-value=3.5e-28  Score=205.21  Aligned_cols=185  Identities=24%  Similarity=0.338  Sum_probs=165.5

Q ss_pred             CCCCCCCceeeeEEeccCCCC---eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEE
Q 026140            8 NKTAGKPIQCRAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVE   83 (243)
Q Consensus         8 ~~~~~~~~~~ka~~~~~~~~~---~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv   83 (243)
                      +.+..++...|++++.+.++|   +.+++++.|....++|+||.+|+.|||+|+..++|.++. ..+|.|-|.|++|+|+
T Consensus        11 ssa~q~~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv   90 (354)
T KOG0025|consen   11 SSASQMPARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVV   90 (354)
T ss_pred             ccccccccccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEE
Confidence            445566788999999999998   667888888887888999999999999999999999866 4689999999999999


Q ss_pred             EeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEec
Q 026140           84 SVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLD  163 (243)
Q Consensus        84 ~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~  163 (243)
                      ++|+++.+|++||.|+.....                                                .|+|++|.+.+
T Consensus        91 ~vGs~vkgfk~Gd~VIp~~a~------------------------------------------------lGtW~t~~v~~  122 (354)
T KOG0025|consen   91 AVGSNVKGFKPGDWVIPLSAN------------------------------------------------LGTWRTEAVFS  122 (354)
T ss_pred             EecCCcCccCCCCeEeecCCC------------------------------------------------CccceeeEeec
Confidence            999999999999999865431                                                25999999999


Q ss_pred             cCcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          164 IAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       164 ~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      .+.+++++++++.++||.+..+.+|||+.+.+..++.+|++|+-.|+ +.+|.+++|+|+++|+ +.|-+.|+....+.
T Consensus       123 e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~Gi-ktinvVRdR~~iee  200 (354)
T KOG0025|consen  123 ESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGI-KTINVVRDRPNIEE  200 (354)
T ss_pred             ccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCc-ceEEEeecCccHHH
Confidence            99999999999999999999999999999989999999999999999 9999999999999999 78888877655544

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=99.96  E-value=1.6e-27  Score=211.73  Aligned_cols=199  Identities=33%  Similarity=0.510  Sum_probs=167.8

Q ss_pred             eEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCC-CC--CCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140           19 AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-DF--PAVFPRILGHEAIGVVESVGENVDGVVEG   95 (243)
Q Consensus        19 a~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~-~~--~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G   95 (243)
                      |++|+++.. +.+++.+.|.|.++||+|||.++++|+.|...+.+. ..  ...+|.++|+|++|+|+++|+++.+|++|
T Consensus         1 ~~~~~~~~~-~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G   79 (343)
T cd05285           1 AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVG   79 (343)
T ss_pred             CceEecCCc-eeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCC
Confidence            467788865 999999999999999999999999999998876422 11  12357789999999999999999999999


Q ss_pred             CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCC
Q 026140           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (243)
Q Consensus        96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~  175 (243)
                      |+|++.+..+|++|.+|+.+.+++|+...+.  ......                   |+|++|++++.+.++++|++++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------------------g~~~~~~~v~~~~~~~lP~~~~  138 (343)
T cd05285          80 DRVAIEPGVPCRTCEFCKSGRYNLCPDMRFA--ATPPVD-------------------GTLCRYVNHPADFCHKLPDNVS  138 (343)
T ss_pred             CEEEEccccCCCCChhHhCcCcccCcCcccc--ccccCC-------------------CceeeeEEecHHHcEECcCCCC
Confidence            9999999999999999999999999765321  111112                   4999999999999999999999


Q ss_pred             hhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +++++.+ ..+.++++++ ...++++|++|+|.|+|.+|++++++|+.+|+..|+++.+++++.++
T Consensus       139 ~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~  202 (343)
T cd05285         139 LEEGALV-EPLSVGVHAC-RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEF  202 (343)
T ss_pred             HHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHH
Confidence            9998876 4788898875 78899999999999889999999999999999448888888777654

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=1.8e-27  Score=210.89  Aligned_cols=189  Identities=25%  Similarity=0.365  Sum_probs=160.7

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC-----------CCCCCeeeecceeEEEEEe
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-----------PAVFPRILGHEAIGVVESV   85 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-----------~~~~p~vlG~e~~G~Vv~v   85 (243)
                      |||+++..+  .+.+++++.|.|.++||+|++.++++|+.|..++.+...           ...+|.++|+|++|+|+++
T Consensus         1 m~a~~~~~~--~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v   78 (341)
T cd08262           1 MRAAVFRDG--PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDY   78 (341)
T ss_pred             CceEEEeCC--ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEe
Confidence            689999876  599999999999999999999999999999998877211           2235788999999999999


Q ss_pred             CCCCCc-cCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEecc
Q 026140           86 GENVDG-VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI  164 (243)
Q Consensus        86 G~~v~~-~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~  164 (243)
                      |+++++ |++||+|+..+...|+.|.+|..+..            + ..+                   |+|++|++++.
T Consensus        79 G~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~------------~-~~~-------------------g~~~~~~~v~~  126 (341)
T cd08262          79 GPGTERKLKVGTRVTSLPLLLCGQGASCGIGLS------------P-EAP-------------------GGYAEYMLLSE  126 (341)
T ss_pred             CCCCcCCCCCCCEEEecCCcCCCCChhhhCCCC------------c-CCC-------------------CceeeeEEech
Confidence            999987 99999999999999999999932210            0 012                   49999999999


Q ss_pred             CcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       165 ~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +.++++|+++++++++ +.+.++++|++ ....++++|++|||+|+|++|.+++|+|+.+|+..++++++++++.++
T Consensus       127 ~~~~~lP~~~s~~~a~-~~~~~~~a~~~-~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~  201 (341)
T cd08262         127 ALLLRVPDGLSMEDAA-LTEPLAVGLHA-VRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRAL  201 (341)
T ss_pred             HHeEECCCCCCHHHhh-hhhhHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHH
Confidence            9999999999998887 55688899987 578889999999999889999999999999999667888877777654

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.96  E-value=1.8e-27  Score=211.03  Aligned_cols=199  Identities=31%  Similarity=0.534  Sum_probs=172.7

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd   96 (243)
                      |||+++++.+. +.+++.+.|++.++||+||+.++++|+.|...+.+.+. ...|.++|+|++|+|+++|+++..|++||
T Consensus         1 ~~a~~~~~~~~-l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~-~~~~~~~g~~~~G~V~~~g~~v~~~~~Gd   78 (343)
T cd08236           1 MKALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGA-YHPPLVLGHEFSGTVEEVGSGVDDLAVGD   78 (343)
T ss_pred             CeeEEEecCCc-eeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCCC-CCCCcccCcceEEEEEEECCCCCcCCCCC
Confidence            68999999876 88999999999999999999999999999988877652 24578899999999999999999999999


Q ss_pred             EEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCCh
Q 026140           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (243)
Q Consensus        97 ~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~  176 (243)
                      +|+..+...|+.|.+|..+++..|+....   +|....                   |+|++|++++.+.++++|+++++
T Consensus        79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~~~~~~~~~lP~~~~~  136 (343)
T cd08236          79 RVAVNPLLPCGKCEYCKKGEYSLCSNYDY---IGSRRD-------------------GAFAEYVSVPARNLIKIPDHVDY  136 (343)
T ss_pred             EEEEcCCCCCCCChhHHCcChhhCCCcce---EecccC-------------------CcccceEEechHHeEECcCCCCH
Confidence            99999888999999999999988876432   332223                   39999999999999999999999


Q ss_pred             hhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       177 ~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ++++.+ ....++|.++ ......++++|+|+|+|.+|++++++|+++|+..++++++++++.++
T Consensus       137 ~~aa~~-~~~~ta~~~l-~~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~  199 (343)
T cd08236         137 EEAAMI-EPAAVALHAV-RLAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAV  199 (343)
T ss_pred             HHHHhc-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHH
Confidence            998887 5788999976 47788999999999889999999999999999449999888776554

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.95  E-value=5.5e-27  Score=207.79  Aligned_cols=201  Identities=31%  Similarity=0.445  Sum_probs=174.8

Q ss_pred             eeeEEeccCC-CCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccCC
Q 026140           17 CRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVE   94 (243)
Q Consensus        17 ~ka~~~~~~~-~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~~   94 (243)
                      |||+++.+++ ..+++++++.|.|.++||+||+.++++|+.|..++.+..+. ...|.++|+|++|+|+++|+++++|++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~~   80 (341)
T cd08297           1 MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLKV   80 (341)
T ss_pred             CceEEeeccCCCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCCC
Confidence            6899998877 33899999999999999999999999999999888776532 345668999999999999999999999


Q ss_pred             CCEEEeec-cCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140           95 GDVVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (243)
Q Consensus        95 Gd~Vv~~~-~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~  173 (243)
                      ||+|+..+ ..+|+.|.+|..+++++|.....   .|....                   |+|++|+.++.+.++++|++
T Consensus        81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~s~~~~~~~~~~~lp~~  138 (341)
T cd08297          81 GDRVGVKWLYDACGKCEYCRTGDETLCPNQKN---SGYTVD-------------------GTFAEYAIADARYVTPIPDG  138 (341)
T ss_pred             CCEEEEecCCCCCCCCccccCCCcccCCCccc---cccccC-------------------CcceeEEEeccccEEECCCC
Confidence            99998765 57899999999999999987654   233223                   38999999999999999999


Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +++.+++.+.....|||.++.. .+++++++|||+|+ +.+|++++++|+++|+ +|+++.+++++.+.
T Consensus       139 ~~~~~~a~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~  205 (341)
T cd08297         139 LSFEQAAPLLCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLEL  205 (341)
T ss_pred             CCHHHHHHHHcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHH
Confidence            9999999989899999997644 58999999999998 6799999999999999 89999998877654

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.95  E-value=3.5e-27  Score=208.89  Aligned_cols=200  Identities=31%  Similarity=0.484  Sum_probs=164.6

Q ss_pred             EeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhh-CCCC--CCCCCeeeecceeEEEEEeCCCCCccCCCCE
Q 026140           21 IATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDF--PAVFPRILGHEAIGVVESVGENVDGVVEGDV   97 (243)
Q Consensus        21 ~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~-g~~~--~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~   97 (243)
                      ++++.+. +++++.+.|.+.++||+||+.++++|+.|...+. +...  ...+|.++|+|++|+|+++|+++++|++||+
T Consensus         2 ~~~~~~~-~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~   80 (339)
T cd08232           2 VIHAAGD-LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQR   80 (339)
T ss_pred             eeccCCc-eEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCE
Confidence            4666766 9999999999999999999999999999988764 3221  1245778999999999999999999999999


Q ss_pred             EEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCCh
Q 026140           98 VIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (243)
Q Consensus        98 Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~  176 (243)
                      |++.+..+|++|.+|..+..++|....+   .+.. .+               ....|+|++|++++.+.++++|+++++
T Consensus        81 V~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~---------------~~~~g~~~~~v~v~~~~~~~iP~~~~~  142 (339)
T cd08232          81 VAVNPSRPCGTCDYCRAGRPNLCLNMRF---LGSAMRF---------------PHVQGGFREYLVVDASQCVPLPDGLSL  142 (339)
T ss_pred             EEEccCCcCCCChHHhCcCcccCccccc---eeecccc---------------CCCCCceeeEEEechHHeEECcCCCCH
Confidence            9999999999999999999999987542   1110 00               001249999999999999999999999


Q ss_pred             hhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       177 ~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ++|+. ...+.++|.++...... ++++|||.|+|.+|++++++|+.+|+.+++++++++++.++
T Consensus       143 ~~aa~-~~~~~~a~~~l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~  205 (339)
T cd08232         143 RRAAL-AEPLAVALHAVNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAV  205 (339)
T ss_pred             HHhhh-cchHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHH
Confidence            99876 46888999876554445 89999998889999999999999999678898887776554

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd05281 TDH Threonine dehydrogenase

Probab=99.95  E-value=3.9e-27  Score=209.16  Aligned_cols=200  Identities=30%  Similarity=0.450  Sum_probs=167.4

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCC---CCCCCCeeeecceeEEEEEeCCCCCccC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFPRILGHEAIGVVESVGENVDGVV   93 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~~~~p~vlG~e~~G~Vv~vG~~v~~~~   93 (243)
                      |||+++.+++..+.+.+.+.|.|.++|++||++++++|+.|..++.+..   .....|.++|+|++|+|+.+|++++.|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~   80 (341)
T cd05281           1 MKAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVK   80 (341)
T ss_pred             CcceEEecCCCceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCC
Confidence            6899999888669999999999999999999999999999988765421   1223567899999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (243)
Q Consensus        94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~  173 (243)
                      +||+|+..+..+|+.|.+|..+++++|+...   +.|....                   |+|++|++++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------------------g~~~~~v~v~~~~~~~lP~~  138 (341)
T cd05281          81 VGDYVSAETHIVCGKCYQCRTGNYHVCQNTK---ILGVDTD-------------------GCFAEYVVVPEENLWKNDKD  138 (341)
T ss_pred             CCCEEEECCccCCCCChHHHCcCcccCcccc---eEeccCC-------------------CcceEEEEechHHcEECcCC
Confidence            9999999888999999999999999997543   2343223                   49999999999999999999


Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ++.+.+ ++...+.++++++.  ....+|++|+|.|+|.+|++++++++++|+.+|++++++++|.++
T Consensus       139 ~~~~~a-~~~~~~~~a~~~~~--~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~  203 (341)
T cd05281         139 IPPEIA-SIQEPLGNAVHTVL--AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLEL  203 (341)
T ss_pred             CCHHHh-hhhhHHHHHHHHHH--hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHH
Confidence            998555 45557788887654  455789999999889999999999999998668888777777654

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=99.95  E-value=3.2e-27  Score=208.28  Aligned_cols=175  Identities=21%  Similarity=0.251  Sum_probs=148.2

Q ss_pred             eeeEEeccCCCC-----eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCC
Q 026140           17 CRAAIATAPGEP-----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVD   90 (243)
Q Consensus        17 ~ka~~~~~~~~~-----~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~   90 (243)
                      |||+++++++.+     +++++++.|.|+++||+||+.++++|++|+.++.|.++. ..+|.++|||++|+|+++|++++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~   80 (324)
T cd08291           1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPL   80 (324)
T ss_pred             CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCcc
Confidence            689999988853     777888999999999999999999999999998886532 35688999999999999999999


Q ss_pred             c-cCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEE
Q 026140           91 G-VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (243)
Q Consensus        91 ~-~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~  169 (243)
                      + |++||+|+..+.                             .+                   |+|++|++++.+.+++
T Consensus        81 ~~~~vGd~V~~~~~-----------------------------~~-------------------g~~a~~~~v~~~~~~~  112 (324)
T cd08291          81 AQSLIGKRVAFLAG-----------------------------SY-------------------GTYAEYAVADAQQCLP  112 (324)
T ss_pred             ccCCCCCEEEecCC-----------------------------CC-------------------CcchheeeecHHHeEE
Confidence            6 999999975321                             01                   3899999999999999


Q ss_pred             cCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEE-C-CCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF-G-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       170 ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~-G-aG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +|+++++++++.+++...|+|. +.+.... ++++++|+ | +|++|++++|+|+++|+ +|++++++++|++++
T Consensus       113 iP~~~~~~~aa~~~~~~~ta~~-~~~~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~  184 (324)
T cd08291         113 LPDGVSFEQGASSFVNPLTALG-MLETARE-EGAKAVVHTAAASALGRMLVRLCKADGI-KVINIVRRKEQVDLL  184 (324)
T ss_pred             CCCCCCHHHHhhhcccHHHHHH-HHHhhcc-CCCcEEEEccCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            9999999999988888889975 4555554 56667665 5 49999999999999999 899999888887654

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.95  E-value=1.3e-26  Score=203.26  Aligned_cols=194  Identities=30%  Similarity=0.477  Sum_probs=165.7

Q ss_pred             eeeEEeccCC-CCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140           17 CRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (243)
Q Consensus        17 ~ka~~~~~~~-~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G   95 (243)
                      ||||++.+.+ ..+.+++++.|.+.++||+|++.++++|+.|...+.+.+.....|.++|+|++|+|+.+|++++.|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   80 (306)
T cd08258           1 MKALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVEGWKVG   80 (306)
T ss_pred             CeeEEEecCCCCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCcCCCCeeeccceEEEEEEECCCcCcCCCC
Confidence            5788988755 248999999999999999999999999999998887765333457899999999999999999999999


Q ss_pred             CEEEeecc-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC
Q 026140           96 DVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (243)
Q Consensus        96 d~Vv~~~~-~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~  174 (243)
                      |+|+..+. .+|+.|.+|..+....|..-+.   .|....                   |+|++|++++.+.++++|+++
T Consensus        81 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~v~~~~~~~lp~~~  138 (306)
T cd08258          81 DRVVSETTFSTCGRCPYCRRGDYNLCPHRKG---IGTQAD-------------------GGFAEYVLVPEESLHELPENL  138 (306)
T ss_pred             CEEEEccCcCCCCCCcchhCcCcccCCCCce---eeecCC-------------------CceEEEEEcchHHeEECcCCC
Confidence            99988774 7899999999999888876321   222222                   499999999999999999999


Q ss_pred             ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026140          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  234 (243)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~  234 (243)
                      ++++++ +.....++|+++.....++++++|+|.|+|.+|++++++|+++|+ +|+++.+
T Consensus       139 ~~~~aa-~~~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~-~v~~~~~  196 (306)
T cd08258         139 SLEAAA-LTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGA-TVVVVGT  196 (306)
T ss_pred             CHHHHH-hhchHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEECC
Confidence            999887 566888999988888889999999998879999999999999999 7877743

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.95  E-value=1.2e-26  Score=205.96  Aligned_cols=192  Identities=28%  Similarity=0.340  Sum_probs=157.3

Q ss_pred             eeeEEeccCCCC--eEEEE-EecCCCCCCeEEEEEeeeecChhhhhhhhCCCC--------------------CCCCCee
Q 026140           17 CRAAIATAPGEP--LVIDE-VIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF--------------------PAVFPRI   73 (243)
Q Consensus        17 ~ka~~~~~~~~~--~~~~e-~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~--------------------~~~~p~v   73 (243)
                      |||+++.+++.+  +.+.+ .+.|.|.+++|+|||.++++|++|+.++.|.++                    ...+|.+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   80 (350)
T cd08274           1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI   80 (350)
T ss_pred             CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence            688888877653  44544 467778999999999999999999998876532                    2346889


Q ss_pred             eecceeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeeccccc
Q 026140           74 LGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSV  153 (243)
Q Consensus        74 lG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~  153 (243)
                      +|||++|+|+++|+++++|++||+|++.+..+|+.|..|..     |   ..   .|...+                   
T Consensus        81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~-----~---~~---~~~~~~-------------------  130 (350)
T cd08274          81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPAD-----I---DY---IGSERD-------------------  130 (350)
T ss_pred             cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCcccccc-----c---cc---cCCCCC-------------------
Confidence            99999999999999999999999999988888877665421     1   10   111112                   


Q ss_pred             ceeeeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEE
Q 026140          154 SSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV  232 (243)
Q Consensus       154 g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~  232 (243)
                      |+|++|++++...++++|+++++.+++.+.+.+.|+|.++ ...++.+|++|+|+|+ |++|++++++|+++|+ +++++
T Consensus       131 g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~vi~~  208 (350)
T cd08274         131 GGFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAV  208 (350)
T ss_pred             ccceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCC-EEEEE
Confidence            3999999999999999999999999999999999999975 7788999999999998 9999999999999999 78888


Q ss_pred             cCCchhhhc
Q 026140          233 DVISEKFEI  241 (243)
Q Consensus       233 ~~~~~~~~~  241 (243)
                      ++++ +.+.
T Consensus       209 ~~~~-~~~~  216 (350)
T cd08274         209 AGAA-KEEA  216 (350)
T ss_pred             eCch-hhHH
Confidence            7655 5443

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=99.95  E-value=7.6e-27  Score=206.17  Aligned_cols=177  Identities=24%  Similarity=0.239  Sum_probs=152.8

Q ss_pred             eeEEeccC---CCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCcc
Q 026140           18 RAAIATAP---GEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGV   92 (243)
Q Consensus        18 ka~~~~~~---~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~   92 (243)
                      ||+++.++   +.+  ++.+++|.|.|+++||+|||+++++|+.|..++.+..+...+|.++|+|++|+|+++|+++++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~   80 (336)
T TIGR02817         1 KAVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQPKILGWDAAGVVVAVGDEVTLF   80 (336)
T ss_pred             CceeeccccCCCCcccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence            57888886   433  7778889999999999999999999999999887765544568899999999999999999999


Q ss_pred             CCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCC
Q 026140           93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (243)
Q Consensus        93 ~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~  172 (243)
                      ++||+|+....                           ....                   |+|++|++++.+.++++|+
T Consensus        81 ~~Gd~V~~~~~---------------------------~~~~-------------------g~~~~~~~v~~~~~~~ip~  114 (336)
T TIGR02817        81 KPGDEVWYAGD---------------------------IDRP-------------------GSNAEFHLVDERIVGHKPK  114 (336)
T ss_pred             CCCCEEEEcCC---------------------------CCCC-------------------CcccceEEEcHHHcccCCC
Confidence            99999975310                           0011                   4899999999999999999


Q ss_pred             CCChhhhcccchhhHhHHHHHHHhcCCCC-----CCEEEEECC-CHHHHHHHHHHHHc-CCCeEEEEcCCchhhhc
Q 026140          173 TVPPNRACLLSCGVSTGVGAAWRTANVEV-----GSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEI  241 (243)
Q Consensus       173 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~-----g~~VlI~Ga-G~vG~~~v~la~~~-g~~~vi~~~~~~~~~~~  241 (243)
                      ++++++++.+++...|||.++....++.+     |++|||+|+ |++|++++|+|+.+ |+ +|+++++++++.+.
T Consensus       115 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~-~vi~~~~~~~~~~~  189 (336)
T TIGR02817       115 SLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGL-TVIATASRPESQEW  189 (336)
T ss_pred             CCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCC-EEEEEcCcHHHHHH
Confidence            99999999999999999998877788776     999999997 99999999999998 99 89999988877654

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=99.95  E-value=1.1e-26  Score=203.87  Aligned_cols=174  Identities=26%  Similarity=0.283  Sum_probs=151.7

Q ss_pred             eeeEEeccCCCC---eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC-CCCCCeeeecceeEEEEEeCCCCCcc
Q 026140           17 CRAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGV   92 (243)
Q Consensus        17 ~ka~~~~~~~~~---~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~vlG~e~~G~Vv~vG~~v~~~   92 (243)
                      |||+++.+++.+   +++++++.|.+.++||+|||.++++|+.|+..+.|.++ ....|.++|||++|+|+++|+++++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~   80 (324)
T cd08292           1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGL   80 (324)
T ss_pred             CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCC
Confidence            689999887753   77899999999999999999999999999998877654 23468899999999999999999999


Q ss_pred             CCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCC
Q 026140           93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (243)
Q Consensus        93 ~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~  172 (243)
                      ++||+|++.+.                              .                   |+|++|+.++...++++|+
T Consensus        81 ~~Gd~V~~~~~------------------------------~-------------------g~~~~~~~~~~~~~~~ip~  111 (324)
T cd08292          81 QVGQRVAVAPV------------------------------H-------------------GTWAEYFVAPADGLVPLPD  111 (324)
T ss_pred             CCCCEEEeccC------------------------------C-------------------CcceeEEEEchHHeEECCC
Confidence            99999975421                              1                   3899999999999999999


Q ss_pred             CCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       173 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ++++++++.+++...++|.++ ...++.+|++|||+|+ |.+|++++++|+++|+ +++++.+++++.+.
T Consensus       112 ~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~~~~~~~  179 (324)
T cd08292         112 GISDEVAAQLIAMPLSALMLL-DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGI-NVINLVRRDAGVAE  179 (324)
T ss_pred             CCCHHHhhhccccHHHHHHHH-HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecCHHHHHH
Confidence            999999999888889999875 5688999999999987 9999999999999999 78888777765543

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.95  E-value=4e-27  Score=204.18  Aligned_cols=154  Identities=23%  Similarity=0.368  Sum_probs=129.9

Q ss_pred             eeecceeEEEEEeCCCCC------ccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCce
Q 026140           73 ILGHEAIGVVESVGENVD------GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET  146 (243)
Q Consensus        73 vlG~e~~G~Vv~vG~~v~------~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~  146 (243)
                      ++|||++|+|+++|++|+      +|++||||++.+..+|++|.+|+.+.+++|+....   .|....+           
T Consensus         1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~-----------   66 (280)
T TIGR03366         1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRK---YGHEALD-----------   66 (280)
T ss_pred             CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhh---cCccccc-----------
Confidence            589999999999999999      89999999999999999999999999999987553   2221100           


Q ss_pred             eecccccceeeeeEEeccC-cEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC
Q 026140          147 IHHFVSVSSFSEYTVLDIA-HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG  225 (243)
Q Consensus       147 ~~~~~~~g~~~~~~~v~~~-~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g  225 (243)
                       ..+...|+|+||++++.. .++++|+++++++++.+.+.+.|+|+++ +.....+|++|||+|+|++|++++|+|+++|
T Consensus        67 -~~~~~~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G  144 (280)
T TIGR03366        67 -SGWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAAL-EAAGDLKGRRVLVVGAGMLGLTAAAAAAAAG  144 (280)
T ss_pred             -CCccccccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHH-HhccCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence             000011499999999987 7999999999999999999999999975 4556679999999999999999999999999


Q ss_pred             CCeEEEEcCCchhhhcC
Q 026140          226 ATRIIGVDVISEKFEIG  242 (243)
Q Consensus       226 ~~~vi~~~~~~~~~~~~  242 (243)
                      +.+|++++++++|++++
T Consensus       145 ~~~Vi~~~~~~~r~~~a  161 (280)
T TIGR03366       145 AARVVAADPSPDRRELA  161 (280)
T ss_pred             CCEEEEECCCHHHHHHH
Confidence            95599999888888764

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08293 PTGR2 Prostaglandin reductase

Probab=99.94  E-value=5.4e-26  Score=201.75  Aligned_cols=162  Identities=21%  Similarity=0.223  Sum_probs=134.2

Q ss_pred             eEEEEEecCCCC-CCeEEEEEeeeecChhhhhhhh---CCCCCCCCCeeeecceeEEEEEeCCCCCccCCCCEEEeeccC
Q 026140           29 LVIDEVIVDPPN-SHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLA  104 (243)
Q Consensus        29 ~~~~e~~~p~~~-~~eVlVkv~~~~i~~~D~~~~~---g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~  104 (243)
                      +++.+.+.|.|. +|||||||.+++||+.|.....   +......+|.++|||++|+|+++|+++++|++||+|+...  
T Consensus        23 ~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~--  100 (345)
T cd08293          23 FRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSFN--  100 (345)
T ss_pred             eEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEecC--
Confidence            888899999874 9999999999999999863322   1111234678999999999999999999999999996420  


Q ss_pred             CCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCChhh----hc
Q 026140          105 DCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR----AC  180 (243)
Q Consensus       105 ~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~----aa  180 (243)
                                                                       ++|+||++++.+.++++|+++++.+    ++
T Consensus       101 -------------------------------------------------~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a  131 (345)
T cd08293         101 -------------------------------------------------WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLG  131 (345)
T ss_pred             -------------------------------------------------CCceeEEEecHHHeEEcCccccccchhHHhh
Confidence                                                             2799999999999999999864332    44


Q ss_pred             ccchhhHhHHHHHHHhcCCCCC--CEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          181 LLSCGVSTGVGAAWRTANVEVG--STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       181 ~~~~~~~ta~~~l~~~~~~~~g--~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      .+.+++.|||+++.+..++++|  ++|||+|+ |++|++++|+|+++|+.+|++++++++|.++
T Consensus       132 ~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~  195 (345)
T cd08293         132 AVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQL  195 (345)
T ss_pred             hcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHH
Confidence            5667899999987777778877  99999998 9999999999999998669999988887664

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=99.94  E-value=4.7e-26  Score=201.69  Aligned_cols=171  Identities=26%  Similarity=0.338  Sum_probs=150.8

Q ss_pred             eeeEEeccCCCC---eEEEEEecCCCCC-CeEEEEEeeeecChhhhhhhhCCCCCC-C----CCeeeecceeEEEEEeCC
Q 026140           17 CRAAIATAPGEP---LVIDEVIVDPPNS-HEVRVRIICTSLCHSDVTFWKMKDFPA-V----FPRILGHEAIGVVESVGE   87 (243)
Q Consensus        17 ~ka~~~~~~~~~---~~~~e~~~p~~~~-~eVlVkv~~~~i~~~D~~~~~g~~~~~-~----~p~vlG~e~~G~Vv~vG~   87 (243)
                      |||+++.+++.+   +.+++.+.|.|.+ +||+||+.++++|+.|...+.+..+.. .    .|.++|||++|+|+++|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~   80 (341)
T cd08290           1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS   80 (341)
T ss_pred             CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence            789999999875   7889999998887 999999999999999999887765321 2    577899999999999999


Q ss_pred             CCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcE
Q 026140           88 NVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHV  167 (243)
Q Consensus        88 ~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~  167 (243)
                      +++.|++||+|++...                             ..                   |+|++|+.++.+.+
T Consensus        81 ~v~~~~~Gd~V~~~~~-----------------------------~~-------------------g~~~~~~~v~~~~~  112 (341)
T cd08290          81 GVKSLKPGDWVIPLRP-----------------------------GL-------------------GTWRTHAVVPADDL  112 (341)
T ss_pred             CCCCCCCCCEEEecCC-----------------------------CC-------------------ccchheEeccHHHe
Confidence            9999999999975421                             01                   48999999999999


Q ss_pred             EEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       168 ~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      +++|+++++++++.+++.+.|+|+++.+...+.+|++|||+|+ |++|++++++|+++|+ +++++.+++
T Consensus       113 ~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~  181 (341)
T cd08290         113 IKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGI-KTINVVRDR  181 (341)
T ss_pred             EeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCC-eEEEEEcCC
Confidence            9999999999999999999999998777778899999999997 9999999999999999 788877665

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=99.94  E-value=1.1e-25  Score=199.85  Aligned_cols=176  Identities=23%  Similarity=0.251  Sum_probs=146.2

Q ss_pred             CceeeeEEeccCCC-CeEEEEEec----CCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecce--eEEEEEe
Q 026140           14 PIQCRAAIATAPGE-PLVIDEVIV----DPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEA--IGVVESV   85 (243)
Q Consensus        14 ~~~~ka~~~~~~~~-~~~~~e~~~----p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~--~G~Vv~v   85 (243)
                      ...+|+|+...+.. .|++++.++    |+|++|||||||++++||+.|...+.|.+.. ...|.++|+++  .|.+..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v   84 (338)
T cd08295           5 QVILKAYVTGFPKESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVV   84 (338)
T ss_pred             EEEEecCCCCCCCccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEE
Confidence            34578887655543 388898887    8899999999999999999999988875432 24577888754  4455557


Q ss_pred             CCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEecc-
Q 026140           86 GENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI-  164 (243)
Q Consensus        86 G~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~-  164 (243)
                      |+.++.|++||+|+..                                                    |+|+||++++. 
T Consensus        85 ~~~v~~~~vGd~V~~~----------------------------------------------------g~~aey~~v~~~  112 (338)
T cd08295          85 DSGNPDFKVGDLVWGF----------------------------------------------------TGWEEYSLIPRG  112 (338)
T ss_pred             ecCCCCCCCCCEEEec----------------------------------------------------CCceeEEEecch
Confidence            8888899999999632                                                    28999999999 


Q ss_pred             CcEEEcC-CCCChh-hhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          165 AHVVKVD-PTVPPN-RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       165 ~~~~~ip-~~~~~~-~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +.++++| +++++. +++.+.+++.|+|+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++.++
T Consensus       113 ~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~  191 (338)
T cd08295         113 QDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDL  191 (338)
T ss_pred             hceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence            7999995 678886 788899999999998777789999999999998 9999999999999999 89999988888765


Q ss_pred             C
Q 026140          242 G  242 (243)
Q Consensus       242 ~  242 (243)
                      +
T Consensus       192 ~  192 (338)
T cd08295         192 L  192 (338)
T ss_pred             H
Confidence            4

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.94  E-value=2e-25  Score=198.07  Aligned_cols=194  Identities=28%  Similarity=0.478  Sum_probs=162.1

Q ss_pred             ccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCC---CCCCCCeeeecceeEEEEEeCCCCCccCCCCEEE
Q 026140           23 TAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVI   99 (243)
Q Consensus        23 ~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv   99 (243)
                      +++++++.+++.+.|.|.++||+||+.++++|+.|..++++..   ....+|.++|+|++|+|+++|+++++|++||+|+
T Consensus         5 ~~~~~~~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~   84 (340)
T TIGR00692         5 TKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVS   84 (340)
T ss_pred             ccCCCCcEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEE
Confidence            6678889999999999999999999999999999998765532   1223567899999999999999999999999999


Q ss_pred             eeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCChhhh
Q 026140          100 PHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRA  179 (243)
Q Consensus       100 ~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a  179 (243)
                      ..+...|+.|..|..+...+|...+.   .+....                   |+|++|++++.+.++++|++++++.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~~~~~~~~~lp~~~~~~~a  142 (340)
T TIGR00692        85 VETHIVCGKCYACRRGQYHVCQNTKI---FGVDTD-------------------GCFAEYAVVPAQNIWKNPKSIPPEYA  142 (340)
T ss_pred             ECCcCCCCCChhhhCcChhhCcCcce---EeecCC-------------------CcceeEEEeehHHcEECcCCCChHhh
Confidence            99999999999999999999987543   222222                   49999999999999999999998655


Q ss_pred             cccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          180 CLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       180 a~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      + +...+.+++.++  .....+|++|+|.|+|++|++++++|+.+|+..|+++++++++.++
T Consensus       143 ~-~~~~~~~a~~~~--~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~  201 (340)
T TIGR00692       143 T-IQEPLGNAVHTV--LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLEL  201 (340)
T ss_pred             h-hcchHHHHHHHH--HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHH
Confidence            4 556888888865  3456899999998889999999999999999448888777766553

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=99.94  E-value=3.1e-25  Score=195.37  Aligned_cols=177  Identities=21%  Similarity=0.194  Sum_probs=155.5

Q ss_pred             eeeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccC
Q 026140           16 QCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVV   93 (243)
Q Consensus        16 ~~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~   93 (243)
                      +||++++.+++.+  +++++++.|.|.++||+||+.++++|++|+.+..+.++...+|.++|+|++|+|+.+|++++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~   80 (327)
T PRK10754          1 MAKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVSKVGSGVKHIK   80 (327)
T ss_pred             CceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCCCCCCCccCcceEEEEEEeCCCCCCCC
Confidence            4899999988764  88889999999999999999999999999988877665445678899999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (243)
Q Consensus        94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~  173 (243)
                      +||+|+....                             ..                   |+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~-----------------------------~~-------------------g~~~~~v~v~~~~~~~lp~~  112 (327)
T PRK10754         81 VGDRVVYAQS-----------------------------AL-------------------GAYSSVHNVPADKAAILPDA  112 (327)
T ss_pred             CCCEEEECCC-----------------------------CC-------------------cceeeEEEcCHHHceeCCCC
Confidence            9999974210                             01                   38999999999999999999


Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +++++++.+.+...++|.++.....+.+|++|+|+|+ |.+|++++++++.+|+ +++++++++++.+.
T Consensus       113 ~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~-~v~~~~~~~~~~~~  180 (327)
T PRK10754        113 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGSAQKAQR  180 (327)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence            9999999888899999998777788999999999986 9999999999999999 89999888877654

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=99.93  E-value=6.7e-25  Score=196.05  Aligned_cols=179  Identities=17%  Similarity=0.219  Sum_probs=144.3

Q ss_pred             CCCCceeeeEEeccCCC------CeEEEEE---ecCC-CCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeec--ce
Q 026140           11 AGKPIQCRAAIATAPGE------PLVIDEV---IVDP-PNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGH--EA   78 (243)
Q Consensus        11 ~~~~~~~ka~~~~~~~~------~~~~~e~---~~p~-~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~--e~   78 (243)
                      ...+.++|.|++.+.-+      .|++.+.   +.|. +++||||||+.+++||+.|...+.+.......|.++|+  |+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~~~~p~~~G~~~~~   82 (348)
T PLN03154          3 EGQVVENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDSYLPPFVPGQRIEG   82 (348)
T ss_pred             CCccccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCCCCCCcCCCCeeEe
Confidence            34456788888854432      2888763   5553 47999999999999999987654432222235788998  88


Q ss_pred             eEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeee
Q 026140           79 IGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSE  158 (243)
Q Consensus        79 ~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~  158 (243)
                      +|+|..+|+++++|++||+|+..                                                    |+|+|
T Consensus        83 ~G~v~~vg~~v~~~~~Gd~V~~~----------------------------------------------------~~~ae  110 (348)
T PLN03154         83 FGVSKVVDSDDPNFKPGDLISGI----------------------------------------------------TGWEE  110 (348)
T ss_pred             eEEEEEEecCCCCCCCCCEEEec----------------------------------------------------CCcEE
Confidence            99999999999999999999632                                                    27999


Q ss_pred             eEEeccCc--EEE--cCCCCChh-hhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEE
Q 026140          159 YTVLDIAH--VVK--VDPTVPPN-RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV  232 (243)
Q Consensus       159 ~~~v~~~~--~~~--ip~~~~~~-~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~  232 (243)
                      |..++...  +++  +|++++++ +++.++++..|||+++.+..++++|++|||+|+ |++|++++|+|+++|+ +|+++
T Consensus       111 y~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~  189 (348)
T PLN03154        111 YSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGS  189 (348)
T ss_pred             EEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEE
Confidence            99998753  544  58999986 688889999999998877788999999999998 9999999999999999 89999


Q ss_pred             cCCchhhhcC
Q 026140          233 DVISEKFEIG  242 (243)
Q Consensus       233 ~~~~~~~~~~  242 (243)
                      +++++|.+++
T Consensus       190 ~~~~~k~~~~  199 (348)
T PLN03154        190 AGSSQKVDLL  199 (348)
T ss_pred             cCCHHHHHHH
Confidence            9888887653

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.93  E-value=2.8e-25  Score=189.02  Aligned_cols=172  Identities=35%  Similarity=0.511  Sum_probs=150.3

Q ss_pred             eEEEEEeeeecChhhhhhhhCCCC-CCCCCeeeecceeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCC
Q 026140           43 EVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCS  121 (243)
Q Consensus        43 eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~  121 (243)
                      ||+|+++++++|+.|...+.+..+ ...+|.++|+|++|+|+++|++++.|++||+|+..+..+|+.|.+|+.    +|+
T Consensus         1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~----~~~   76 (271)
T cd05188           1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRE----LCP   76 (271)
T ss_pred             CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHh----hCC
Confidence            689999999999999999888654 345678999999999999999999999999999999999999999996    676


Q ss_pred             CCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCC
Q 026140          122 AFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEV  201 (243)
Q Consensus       122 ~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~  201 (243)
                      ....   .+....                   |+|++|+.++.+.++++|+++++++++.+++.+.++|.++.....+.+
T Consensus        77 ~~~~---~~~~~~-------------------g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~  134 (271)
T cd05188          77 GGGI---LGEGLD-------------------GGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKP  134 (271)
T ss_pred             CCCE---eccccC-------------------CcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCC
Confidence            5553   222223                   499999999999999999999999999998999999998766666689


Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       202 g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +++|+|+|+|++|++++++++.+|. +|+++++++++.+.
T Consensus       135 ~~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~  173 (271)
T cd05188         135 GDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLEL  173 (271)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHH
Confidence            9999999996699999999999998 89999988777654

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.93  E-value=1.1e-24  Score=191.59  Aligned_cols=196  Identities=27%  Similarity=0.316  Sum_probs=161.7

Q ss_pred             eeeEEeccCC--CCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccC
Q 026140           17 CRAAIATAPG--EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (243)
Q Consensus        17 ~ka~~~~~~~--~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~   93 (243)
                      |||++++..+  +.+++.+.+.|.+.++|++|++.++++|++|..+..+.++. ...|.++|||++|+|+++|+++.+|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (336)
T cd08276           1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFK   80 (336)
T ss_pred             CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCC
Confidence            7899999765  23777888888889999999999999999999988776432 24678899999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (243)
Q Consensus        94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~  173 (243)
                      +||+|++.....|+.+.+      .+|....   +.|....                   |+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~------~~~~~~~---~~~~~~~-------------------g~~~~~~~~~~~~~~~lp~~  132 (336)
T cd08276          81 VGDRVVPTFFPNWLDGPP------TAEDEAS---ALGGPID-------------------GVLAEYVVLPEEGLVRAPDH  132 (336)
T ss_pred             CCCEEEEecccccccccc------ccccccc---ccccccC-------------------ceeeeEEEecHHHeEECCCC
Confidence            999999877665554333      2332211   1222122                   48999999999999999999


Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +++.+++.+.+.+.++|.++.....+++|++|+|+|+|++|++++++++++|+ +|+++++++++.+.
T Consensus       133 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~-~v~~~~~~~~~~~~  199 (336)
T cd08276         133 LSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLER  199 (336)
T ss_pred             CCHHHhhhhhHHHHHHHHHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence            99999999999999999987777889999999999889999999999999999 79999988877654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=99.93  E-value=4.6e-25  Score=194.08  Aligned_cols=168  Identities=20%  Similarity=0.222  Sum_probs=140.2

Q ss_pred             eeeeEEeccC--CCC----eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCC
Q 026140           16 QCRAAIATAP--GEP----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (243)
Q Consensus        16 ~~ka~~~~~~--~~~----~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v   89 (243)
                      +||+|++.++  +++    +++++.+.|.|++|||||||++++||+.|......   ....|.++|+|++|+|++   .+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~---~~~~p~v~G~e~~G~V~~---~~   75 (329)
T cd08294           2 KAKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSKR---LNEGDTMIGTQVAKVIES---KN   75 (329)
T ss_pred             CceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhccccc---CCCCCcEecceEEEEEec---CC
Confidence            6899999994  333    78889999999999999999999999887553221   124688999999999985   44


Q ss_pred             CccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccC---c
Q 026140           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA---H  166 (243)
Q Consensus        90 ~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~---~  166 (243)
                      ++|++||+|+..                                                    ++|++|++++..   .
T Consensus        76 ~~~~~Gd~V~~~----------------------------------------------------~~~~~~~~~~~~~~~~  103 (329)
T cd08294          76 SKFPVGTIVVAS----------------------------------------------------FGWRTHTVSDGKDQPD  103 (329)
T ss_pred             CCCCCCCEEEee----------------------------------------------------CCeeeEEEECCccccc
Confidence            579999999632                                                    268999999999   9


Q ss_pred             EEEcCCCCC--h---hhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          167 VVKVDPTVP--P---NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       167 ~~~ip~~~~--~---~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ++++|++++  +   ..++.+++++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++.+
T Consensus       104 ~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~  182 (329)
T cd08294         104 LYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVA  182 (329)
T ss_pred             eEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHH
Confidence            999999987  2   2234577899999998878888999999999997 9999999999999999 8999998888876


Q ss_pred             cC
Q 026140          241 IG  242 (243)
Q Consensus       241 ~~  242 (243)
                      ++
T Consensus       183 ~l  184 (329)
T cd08294         183 WL  184 (329)
T ss_pred             HH
Confidence            54

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.93  E-value=7.6e-25  Score=192.04  Aligned_cols=180  Identities=19%  Similarity=0.191  Sum_probs=150.2

Q ss_pred             eeeEEeccCCC--CeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccC
Q 026140           17 CRAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (243)
Q Consensus        17 ~ka~~~~~~~~--~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~   93 (243)
                      |||++++++++  ++++++++.|.|+++||+||+.++++|++|...+.|..+. ..+|.++|||++|+|+++  +++.|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~   78 (325)
T cd05280           1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFR   78 (325)
T ss_pred             CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCC
Confidence            68999999985  5999999999999999999999999999999988776432 235778999999999998  456799


Q ss_pred             CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (243)
Q Consensus        94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~  173 (243)
                      +||+|++.+.                        ..|+..+                   |+|++|++++.+.++++|++
T Consensus        79 ~Gd~V~~~~~------------------------~~g~~~~-------------------g~~~~~~~v~~~~~~~lp~~  115 (325)
T cd05280          79 EGDEVLVTGY------------------------DLGMNTD-------------------GGFAEYVRVPADWVVPLPEG  115 (325)
T ss_pred             CCCEEEEccc------------------------ccCCCCC-------------------ceeEEEEEEchhhEEECCCC
Confidence            9999986421                        0122122                   38999999999999999999


Q ss_pred             CChhhhcccchhhHhHHHHHHHhc--CCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTA--NVE-VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~--~~~-~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++++++.+++.+.++|.++....  ++. .+++|+|+|+ |.+|++++++|+.+|+ +|+++++++++.+.+
T Consensus       116 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~  187 (325)
T cd05280         116 LSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGY-TVVALTGKEEQADYL  187 (325)
T ss_pred             CCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            999999999999999998765443  234 3579999998 9999999999999999 799999888877653

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=99.93  E-value=8.9e-25  Score=192.80  Aligned_cols=155  Identities=21%  Similarity=0.222  Sum_probs=133.7

Q ss_pred             eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCCEEEeeccCCCCC
Q 026140           29 LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTE  108 (243)
Q Consensus        29 ~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~  108 (243)
                      +++.+.+.|.|++|||||||.+++||+.|.   ++.+.....|.++|.|++|+|+++|+   +|++||+|+..       
T Consensus        19 l~~~~~~~p~~~~~evlv~v~a~~~n~~~~---~g~~~~~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~-------   85 (325)
T TIGR02825        19 FELKTVELPPLNNGEVLLEALFLSVDPYMR---VAAKRLKEGDTMMGQQVARVVESKNV---ALPKGTIVLAS-------   85 (325)
T ss_pred             eEEEeccCCCCCCCcEEEEEEEEecCHHHh---cccCcCCCCCcEecceEEEEEEeCCC---CCCCCCEEEEe-------
Confidence            888899999999999999999999999654   34333334578999999999999874   59999999742       


Q ss_pred             CccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEc----CCCCChhhh-cccc
Q 026140          109 CVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV----DPTVPPNRA-CLLS  183 (243)
Q Consensus       109 c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i----p~~~~~~~a-a~~~  183 (243)
                                                                   ++|++|++++.+.+.++    |++++++++ +.++
T Consensus        86 ---------------------------------------------~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~  120 (325)
T TIGR02825        86 ---------------------------------------------PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVG  120 (325)
T ss_pred             ---------------------------------------------cCceeeEEechhheEEccccccCCCCHHHHHHhcc
Confidence                                                         16899999999888877    899999987 6788


Q ss_pred             hhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          184 CGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       184 ~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|++++++++|.+++
T Consensus       121 ~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~  179 (325)
T TIGR02825       121 MPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYL  179 (325)
T ss_pred             cHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            899999998878899999999999997 9999999999999999 899999888887654

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.93  E-value=1.2e-24  Score=193.08  Aligned_cols=172  Identities=21%  Similarity=0.238  Sum_probs=147.7

Q ss_pred             eeeEEeccCCCC---eEEEEEecCCC-CCCeEEEEEeeeecChhhhhhhhCCCC---------------CCCCCeeeecc
Q 026140           17 CRAAIATAPGEP---LVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDF---------------PAVFPRILGHE   77 (243)
Q Consensus        17 ~ka~~~~~~~~~---~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~---------------~~~~p~vlG~e   77 (243)
                      |||+++.+++++   +.+++.+.|.| .++||+|+++++++|++|..++.+...               ....|.++|||
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e   80 (350)
T cd08248           1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD   80 (350)
T ss_pred             CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence            689999888875   78889999999 499999999999999999998876421               23568899999


Q ss_pred             eeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceee
Q 026140           78 AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFS  157 (243)
Q Consensus        78 ~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~  157 (243)
                      ++|+|+++|+++++|++||+|++.+..                           ..+                   |+|+
T Consensus        81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~~---------------------------~~~-------------------g~~~  114 (350)
T cd08248          81 CSGVVVDIGSGVKSFEIGDEVWGAVPP---------------------------WSQ-------------------GTHA  114 (350)
T ss_pred             eEEEEEecCCCcccCCCCCEEEEecCC---------------------------CCC-------------------ccce
Confidence            999999999999999999999864321                           011                   4899


Q ss_pred             eeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCC----CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEE
Q 026140          158 EYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVE----VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV  232 (243)
Q Consensus       158 ~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~----~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~  232 (243)
                      +|+.++.+.++++|+++++++++.+++.+.++|.++.+...+.    +|++|+|+|+ |++|++++++++.+|+ +|+++
T Consensus       115 ~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~  193 (350)
T cd08248         115 EYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGA-HVTTT  193 (350)
T ss_pred             eEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEE
Confidence            9999999999999999999999999999999999876666664    4999999997 9999999999999999 78887


Q ss_pred             cCC
Q 026140          233 DVI  235 (243)
Q Consensus       233 ~~~  235 (243)
                      .++
T Consensus       194 ~~~  196 (350)
T cd08248         194 CST  196 (350)
T ss_pred             eCc
Confidence            754

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.93  E-value=8.8e-25  Score=194.11  Aligned_cols=181  Identities=28%  Similarity=0.402  Sum_probs=150.8

Q ss_pred             eeeEEeccCC-CCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140           17 CRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (243)
Q Consensus        17 ~ka~~~~~~~-~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G   95 (243)
                      |||+++..++ ..+++++++.|.|+++||+|+++++++|++|...+.+.. ....|.++|+|++|+|+.+|++++.|++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~-~~~~~~~~g~e~~G~v~~vG~~v~~~~~G   79 (339)
T cd08249           1 QKAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGF-IPSYPAILGCDFAGTVVEVGSGVTRFKVG   79 (339)
T ss_pred             CceEEeccCCCCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeeccc-ccCCCceeeeeeeEEEEEeCCCcCcCCCC
Confidence            6899999884 238889999999999999999999999999988775543 22356789999999999999999999999


Q ss_pred             CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCC
Q 026140           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (243)
Q Consensus        96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~  175 (243)
                      |+|+......|+                      +...+                   |+|++|++++.+.++++|++++
T Consensus        80 d~V~~~~~~~~~----------------------~~~~~-------------------g~~~~~~~v~~~~~~~ip~~~~  118 (339)
T cd08249          80 DRVAGFVHGGNP----------------------NDPRN-------------------GAFQEYVVADADLTAKIPDNIS  118 (339)
T ss_pred             CEEEEEeccccC----------------------CCCCC-------------------CcccceEEechhheEECCCCCC
Confidence            999876543221                      00012                   4899999999999999999999


Q ss_pred             hhhhcccchhhHhHHHHHHHhcCC----------CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          176 PNRACLLSCGVSTGVGAAWRTANV----------EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~----------~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +.+++.+++.+.++|.++.+..+.          .++++|+|+|+ |++|++++++|+++|+ +|+++. +++|.+.
T Consensus       119 ~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~-~v~~~~-~~~~~~~  193 (339)
T cd08249         119 FEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITTA-SPKNFDL  193 (339)
T ss_pred             HHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCC-eEEEEE-CcccHHH
Confidence            999999999999999987655544          78999999998 8999999999999999 788877 4556544

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.93  E-value=3.2e-24  Score=188.01  Aligned_cols=176  Identities=24%  Similarity=0.322  Sum_probs=150.1

Q ss_pred             eeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC---CCCCCeeeecceeEEEEEeCCCCCc
Q 026140           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDG   91 (243)
Q Consensus        17 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~vlG~e~~G~Vv~vG~~v~~   91 (243)
                      |||+++++++.+  +.+.+.+.|.+.++||+|++.++++|+.|...+.+..+   ...+|.++|+|++|+|+++|+++..
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~   80 (324)
T cd08244           1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP   80 (324)
T ss_pred             CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence            689999876653  56667777778899999999999999999988877542   2356788999999999999999999


Q ss_pred             cCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcC
Q 026140           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (243)
Q Consensus        92 ~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip  171 (243)
                      +++||+|++...                            ...                   |+|++|++++...++++|
T Consensus        81 ~~~Gd~V~~~~~----------------------------~~~-------------------g~~~~~~~v~~~~~~~lp  113 (324)
T cd08244          81 AWLGRRVVAHTG----------------------------RAG-------------------GGYAELAVADVDSLHPVP  113 (324)
T ss_pred             CCCCCEEEEccC----------------------------CCC-------------------ceeeEEEEEchHHeEeCC
Confidence            999999976421                            011                   489999999999999999


Q ss_pred             CCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +++++++++.+++.+.|+|. +....+++++++|+|+|+ |++|++++++|+.+|+ +|+++++++++.+.
T Consensus       114 ~~~~~~~a~~~~~~~~ta~~-~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~-~v~~~~~~~~~~~~  182 (324)
T cd08244         114 DGLDLEAAVAVVHDGRTALG-LLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGA-TVVGAAGGPAKTAL  182 (324)
T ss_pred             CCCCHHHHhhhcchHHHHHH-HHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            99999999999999999964 677888999999999996 9999999999999999 89999988877654

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.93  E-value=2.7e-24  Score=189.00  Aligned_cols=180  Identities=16%  Similarity=0.158  Sum_probs=146.4

Q ss_pred             eeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCC-CCCCCCeeeecceeEEEEEeCCCCCccC
Q 026140           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-FPAVFPRILGHEAIGVVESVGENVDGVV   93 (243)
Q Consensus        17 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~-~~~~~p~vlG~e~~G~Vv~vG~~v~~~~   93 (243)
                      |||+++.+++++  +.+++.+.|.|.++||+||+.++++|+.|.....+.. ....+|.++|||++|+|++.|  +.+|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~   78 (326)
T cd08289           1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFK   78 (326)
T ss_pred             CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCC
Confidence            789999988874  7788999999999999999999999999987664321 123458899999999999954  56799


Q ss_pred             CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (243)
Q Consensus        94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~  173 (243)
                      +||+|++.+..                        .|...+                   |+|++|+.++.+.++++|++
T Consensus        79 ~Gd~V~~~~~~------------------------~~~~~~-------------------g~~~~~~~v~~~~~~~~p~~  115 (326)
T cd08289          79 PGDEVIVTSYD------------------------LGVSHH-------------------GGYSEYARVPAEWVVPLPKG  115 (326)
T ss_pred             CCCEEEEcccc------------------------cCCCCC-------------------CcceeEEEEcHHHeEECCCC
Confidence            99999864320                        111112                   49999999999999999999


Q ss_pred             CChhhhcccchhhHhHHHHHHHh--cC-CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRT--AN-VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~--~~-~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++++++.+++...|+|.++...  .. ...+++|+|+|+ |++|++++++|+.+|+ +|+++++++++.+.+
T Consensus       116 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~  187 (326)
T cd08289         116 LTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGY-EVVASTGKADAADYL  187 (326)
T ss_pred             CCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-eEEEEecCHHHHHHH
Confidence            99999999999999998876432  22 334789999998 9999999999999999 899999888877653

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.93  E-value=4e-24  Score=186.56  Aligned_cols=179  Identities=26%  Similarity=0.350  Sum_probs=151.7

Q ss_pred             eeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCC
Q 026140           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (243)
Q Consensus        17 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~   94 (243)
                      ||++++.+.+.+  +.+.+.+.|.+.++||+||++++++|+.|...+.+..+....|.++|+|++|+|+++|.  ..+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~--~~~~~   78 (320)
T cd08243           1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLGIEAVGEVEEAPG--GTFTP   78 (320)
T ss_pred             CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCccccceeEEEEEEecC--CCCCC
Confidence            688998877642  66677777778999999999999999999998887654456678999999999999995  57999


Q ss_pred             CCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC
Q 026140           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (243)
Q Consensus        95 Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~  174 (243)
                      ||+|+.....                        .+....                   |+|++|+.++...++++|+++
T Consensus        79 Gd~V~~~~~~------------------------~~~~~~-------------------g~~~~~~~~~~~~~~~ip~~~  115 (320)
T cd08243          79 GQRVATAMGG------------------------MGRTFD-------------------GSYAEYTLVPNEQVYAIDSDL  115 (320)
T ss_pred             CCEEEEecCC------------------------CCCCCC-------------------cccceEEEcCHHHcEeCCCCC
Confidence            9999865320                        111111                   389999999999999999999


Q ss_pred             ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ++++++.+.+.+.++|.++.....+.+|++|+|+|+ |++|++++++|+.+|+ +|+++++++++.+.
T Consensus       116 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~  182 (320)
T cd08243         116 SWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGA-TVTATTRSPERAAL  182 (320)
T ss_pred             CHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence            999999999999999998877778999999999998 9999999999999999 79999988877654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.93  E-value=3.2e-24  Score=188.88  Aligned_cols=173  Identities=27%  Similarity=0.290  Sum_probs=150.8

Q ss_pred             eeeeEEeccCCC----CeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCC
Q 026140           16 QCRAAIATAPGE----PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVD   90 (243)
Q Consensus        16 ~~ka~~~~~~~~----~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~   90 (243)
                      .|||+++.+++.    ++++++++.|.|.++||+|||.++++|+.|..++.+.+.. ..+|.++|+|++|+|+.+|+++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~   80 (329)
T cd08250           1 SFRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVT   80 (329)
T ss_pred             CceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCC
Confidence            489999998776    4888999999999999999999999999999988776532 46788999999999999999999


Q ss_pred             ccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEc
Q 026140           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (243)
Q Consensus        91 ~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i  170 (243)
                      +|++||+|+...                                                  .|+|++|++++.+.++++
T Consensus        81 ~~~~Gd~V~~~~--------------------------------------------------~g~~~s~~~v~~~~~~~i  110 (329)
T cd08250          81 DFKVGDAVATMS--------------------------------------------------FGAFAEYQVVPARHAVPV  110 (329)
T ss_pred             CCCCCCEEEEec--------------------------------------------------CcceeEEEEechHHeEEC
Confidence            999999997531                                                  148999999999999999


Q ss_pred             CCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       171 p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      |++  ..+++.+.+.+.++|+++.+...+.+|++|+|+|+ |.+|++++++++.+|+ +|+++++++++.+.
T Consensus       111 p~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~-~v~~~~~~~~~~~~  179 (329)
T cd08250         111 PEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGC-HVIGTCSSDEKAEF  179 (329)
T ss_pred             CCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCC-eEEEEeCcHHHHHH
Confidence            987  34667788899999998877788999999999997 9999999999999999 79998888776543

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.93  E-value=2.6e-24  Score=189.20  Aligned_cols=176  Identities=26%  Similarity=0.303  Sum_probs=152.0

Q ss_pred             eeeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC-CCCCCeeeecceeEEEEEeCCCCCcc
Q 026140           16 QCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGV   92 (243)
Q Consensus        16 ~~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~vlG~e~~G~Vv~vG~~v~~~   92 (243)
                      +|||+++.++++.  +.+.+.+.|.+.++||+|||.++++|+.|...+.+..+ ....|.++|+|++|+|+++|++++++
T Consensus         1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~   80 (334)
T PTZ00354          1 MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRF   80 (334)
T ss_pred             CcEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence            5899999988863  66677777888999999999999999999988877543 23345689999999999999999999


Q ss_pred             CCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCC
Q 026140           93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (243)
Q Consensus        93 ~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~  172 (243)
                      ++||+|+....                              +                   |+|++|++++.+.++++|+
T Consensus        81 ~~Gd~V~~~~~------------------------------~-------------------g~~~~~~~v~~~~~~~ip~  111 (334)
T PTZ00354         81 KEGDRVMALLP------------------------------G-------------------GGYAEYAVAHKGHVMHIPQ  111 (334)
T ss_pred             CCCCEEEEecC------------------------------C-------------------CceeeEEEecHHHcEeCCC
Confidence            99999975311                              1                   3899999999999999999


Q ss_pred             CCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       173 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ++++.+++.+.+.+.++|.++.+.....+|++|+|+|+ |.+|++++++|+++|+ +++.+.+++++.+.
T Consensus       112 ~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~  180 (334)
T PTZ00354        112 GYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGA-ATIITTSSEEKVDF  180 (334)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence            99999999999999999998777788999999999997 9999999999999999 77778878777654

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.92  E-value=3.1e-24  Score=186.72  Aligned_cols=171  Identities=23%  Similarity=0.253  Sum_probs=146.2

Q ss_pred             eeeEEeccCC-CCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140           17 CRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (243)
Q Consensus        17 ~ka~~~~~~~-~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G   95 (243)
                      ||++++.+.+ ..+++++.+.|.+.++||+||+.++++|+.|..+....    ..|.++|+|++|+|+++|+++..|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~----~~~~~~g~e~~G~v~~~G~~v~~~~~G   76 (305)
T cd08270           1 MRALVVDPDAPLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER----PDGAVPGWDAAGVVERAAADGSGPAVG   76 (305)
T ss_pred             CeEEEEccCCCceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC----CCCCcccceeEEEEEEeCCCCCCCCCC
Confidence            5889998754 12666788888899999999999999999999876522    235789999999999999999999999


Q ss_pred             CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCC
Q 026140           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (243)
Q Consensus        96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~  175 (243)
                      |+|+....                              .                   |+|++|+.++.+.++++|++++
T Consensus        77 d~V~~~~~------------------------------~-------------------g~~~~~~~v~~~~~~~ip~~~~  107 (305)
T cd08270          77 ARVVGLGA------------------------------M-------------------GAWAELVAVPTGWLAVLPDGVS  107 (305)
T ss_pred             CEEEEecC------------------------------C-------------------cceeeEEEEchHHeEECCCCCC
Confidence            99975310                              1                   4899999999999999999999


Q ss_pred             hhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++++.+++.+.++|+++..... .+|++|+|+|+ |++|++++++++.+|+ +|+++++++++.+.+
T Consensus       108 ~~~a~~~~~~~~ta~~~~~~~~~-~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~  173 (305)
T cd08270         108 FAQAATLPVAGVTALRALRRGGP-LLGRRVLVTGASGGVGRFAVQLAALAGA-HVVAVVGSPARAEGL  173 (305)
T ss_pred             HHHHHHhHhHHHHHHHHHHHhCC-CCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            99999999999999998655444 46999999998 9999999999999999 899999888877654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.92  E-value=5.8e-24  Score=187.63  Aligned_cols=178  Identities=25%  Similarity=0.214  Sum_probs=151.8

Q ss_pred             eeeEEeccCCCC-----eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCc
Q 026140           17 CRAAIATAPGEP-----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG   91 (243)
Q Consensus        17 ~ka~~~~~~~~~-----~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~   91 (243)
                      |||+++++++++     +..++++.|.|.+++|+|++.++++|+.|...+.+.++....|.++|||++|+|+.+|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~   80 (336)
T cd08252           1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPKILGWDASGVVEAVGSEVTL   80 (336)
T ss_pred             CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCCCCCCcccccceEEEEEEcCCCCCC
Confidence            579999998873     444567777888999999999999999999888776554456778999999999999999999


Q ss_pred             cCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcC
Q 026140           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (243)
Q Consensus        92 ~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip  171 (243)
                      |++||+|+.....                           ..+                   |+|++|+.++.+.++++|
T Consensus        81 ~~~Gd~V~~~~~~---------------------------~~~-------------------g~~~~~~~v~~~~~~~ip  114 (336)
T cd08252          81 FKVGDEVYYAGDI---------------------------TRP-------------------GSNAEYQLVDERIVGHKP  114 (336)
T ss_pred             CCCCCEEEEcCCC---------------------------CCC-------------------ccceEEEEEchHHeeeCC
Confidence            9999999753210                           011                   389999999999999999


Q ss_pred             CCCChhhhcccchhhHhHHHHHHHhcCCCC-----CCEEEEECC-CHHHHHHHHHHHHcC-CCeEEEEcCCchhhhc
Q 026140          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEV-----GSTVVIFGL-GSIGLAVAEGARLCG-ATRIIGVDVISEKFEI  241 (243)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~-----g~~VlI~Ga-G~vG~~~v~la~~~g-~~~vi~~~~~~~~~~~  241 (243)
                      +++++++++.+++.+.++|.++.+.....+     |++|+|+|+ |++|++++++++.+| + +|+++++++++.++
T Consensus       115 ~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~-~v~~~~~~~~~~~~  190 (336)
T cd08252         115 KSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGL-TVIATASRPESIAW  190 (336)
T ss_pred             CCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCc-EEEEEcCChhhHHH
Confidence            999999999999999999998777777777     999999996 999999999999999 7 89999988877654

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.92  E-value=8.1e-24  Score=185.87  Aligned_cols=178  Identities=17%  Similarity=0.171  Sum_probs=146.8

Q ss_pred             eeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccCC
Q 026140           18 RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVE   94 (243)
Q Consensus        18 ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~~   94 (243)
                      ||+++...+.+  ++++++|.|.|.++||+||++++++|+.|...+.+.++. ...|.++|||++|+|+.  .++++|++
T Consensus         1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~   78 (323)
T TIGR02823         1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFRE   78 (323)
T ss_pred             CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCC
Confidence            67888887774  678999999999999999999999999999988876532 34588899999999988  56678999


Q ss_pred             CCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC
Q 026140           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (243)
Q Consensus        95 Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~  174 (243)
                      ||+|++....                        .|...+                   |+|++|+.++.+.++++|+++
T Consensus        79 Gd~V~~~~~~------------------------~~~~~~-------------------g~~~~~~~~~~~~~~~iP~~~  115 (323)
T TIGR02823        79 GDEVIVTGYG------------------------LGVSHD-------------------GGYSQYARVPADWLVPLPEGL  115 (323)
T ss_pred             CCEEEEccCC------------------------CCCCCC-------------------ccceEEEEEchhheEECCCCC
Confidence            9999864310                        111112                   489999999999999999999


Q ss_pred             ChhhhcccchhhHhHHHHHHHh--cCCCCCC-EEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          175 PPNRACLLSCGVSTGVGAAWRT--ANVEVGS-TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~--~~~~~g~-~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ++++++.+++.+.+++.++...  ..+.+|+ +|+|+|+ |.+|++++++|+.+|+ +++++.+++++.+.
T Consensus       116 ~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~-~vi~~~~~~~~~~~  185 (323)
T TIGR02823       116 SLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGY-EVVASTGKAEEEDY  185 (323)
T ss_pred             CHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHH
Confidence            9999999998999998765332  3478898 9999998 9999999999999999 78887777766554

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.92  E-value=1.4e-23  Score=184.57  Aligned_cols=174  Identities=28%  Similarity=0.340  Sum_probs=152.5

Q ss_pred             eeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccC
Q 026140           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (243)
Q Consensus        17 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~   93 (243)
                      +|||++...+.+  +++++.+.|.|.++||+|++.++++|+.|..++.+.... ..+|.++|+|++|+|+.+|+++..|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~   80 (331)
T cd08273           1 NREVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFE   80 (331)
T ss_pred             CeeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCC
Confidence            488999988764  778888999999999999999999999999988776532 34678999999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (243)
Q Consensus        94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~  173 (243)
                      +||+|+....                              .                   |+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~------------------------------~-------------------g~~~~~~~~~~~~~~~~p~~  111 (331)
T cd08273          81 VGDRVAALTR------------------------------V-------------------GGNAEYINLDAKYLVPVPEG  111 (331)
T ss_pred             CCCEEEEeCC------------------------------C-------------------cceeeEEEechHHeEECCCC
Confidence            9999975421                              1                   38999999999999999999


Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +++.+++.+.+.+.++|.++.+...+.+|++|+|+|+ |++|++++++++.+|+ +|+++++ +++.++
T Consensus       112 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~v~~~~~-~~~~~~  178 (331)
T cd08273         112 VDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGA-EVYGTAS-ERNHAA  178 (331)
T ss_pred             CCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeC-HHHHHH
Confidence            9999999999999999998777788999999999998 9999999999999999 8888886 665543

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.92  E-value=1.8e-23  Score=183.57  Aligned_cols=179  Identities=14%  Similarity=0.104  Sum_probs=147.3

Q ss_pred             eeeEEeccCCC--CeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccC
Q 026140           17 CRAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (243)
Q Consensus        17 ~ka~~~~~~~~--~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~   93 (243)
                      |||+++.+++.  .+++++.+.|.|.++||+|++.++++|+.|...+.+.... ..+|.++|||++|+|++  +++.+++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~   78 (324)
T cd08288           1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFK   78 (324)
T ss_pred             CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCC
Confidence            78999998885  3888999999999999999999999999999888776432 24578899999999999  6777899


Q ss_pred             CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (243)
Q Consensus        94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~  173 (243)
                      +||+|+.....                        .+....                   |+|++|++++.+.++++|++
T Consensus        79 ~Gd~V~~~~~~------------------------~~~~~~-------------------g~~~~~~~v~~~~~~~lp~~  115 (324)
T cd08288          79 PGDRVVLTGWG------------------------VGERHW-------------------GGYAQRARVKADWLVPLPEG  115 (324)
T ss_pred             CCCEEEECCcc------------------------CCCCCC-------------------CcceeEEEEchHHeeeCCCC
Confidence            99999864210                        110012                   38999999999999999999


Q ss_pred             CChhhhcccchhhHhHHHHHH--HhcCCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          174 VPPNRACLLSCGVSTGVGAAW--RTANVE-VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~--~~~~~~-~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +++++++.+++.+.+++.++.  ...+.. ++++|+|+|+ |++|++++|+|+.+|+ +|++++.+++|.++
T Consensus       116 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~-~vi~~~~~~~~~~~  186 (324)
T cd08288         116 LSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGY-EVVASTGRPEEADY  186 (324)
T ss_pred             CCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHH
Confidence            999999999989999887543  123444 5789999998 9999999999999999 89998888877654

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.91  E-value=4.1e-23  Score=179.69  Aligned_cols=180  Identities=29%  Similarity=0.368  Sum_probs=154.0

Q ss_pred             eeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC-CCCCCeeeecceeEEEEEeCCCCCccC
Q 026140           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGVV   93 (243)
Q Consensus        17 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~vlG~e~~G~Vv~vG~~v~~~~   93 (243)
                      ||++++..++.+  +++.+++.|.+.+++|+|++.++++|+.|...+.+... ...+|.++|||++|+|+.+|+++.+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~   80 (325)
T cd08253           1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLK   80 (325)
T ss_pred             CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCC
Confidence            578888876543  77788888889999999999999999999988877543 235788999999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (243)
Q Consensus        94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~  173 (243)
                      +||+|+......                         ....                   |++++|+.++.+.++++|++
T Consensus        81 ~Gd~v~~~~~~~-------------------------~~~~-------------------g~~~~~~~~~~~~~~~ip~~  116 (325)
T cd08253          81 VGDRVWLTNLGW-------------------------GRRQ-------------------GTAAEYVVVPADQLVPLPDG  116 (325)
T ss_pred             CCCEEEEecccc-------------------------CCCC-------------------cceeeEEEecHHHcEeCCCC
Confidence            999998654200                         0011                   48999999999999999999


Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +++.+++.+.+...++|.++....++.+|++++|+|+ |++|++++++++.+|+ +|+++++++++.++
T Consensus       117 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~  184 (325)
T cd08253         117 VSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAEL  184 (325)
T ss_pred             CCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence            9999999999999999998777788999999999997 9999999999999999 89999988877654

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.91  E-value=4.7e-23  Score=183.61  Aligned_cols=175  Identities=19%  Similarity=0.244  Sum_probs=144.1

Q ss_pred             eeeEEeccCCCCeEEEEEecCCC---CCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCC-c
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPP---NSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVD-G   91 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~---~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~-~   91 (243)
                      +|++++.+++.++++++++.|.|   .++||+||+.++++|++|+..+.+.... ...|.++|+|++|+|+++|++++ +
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~   80 (352)
T cd08247           1 YKALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASE   80 (352)
T ss_pred             CceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccC
Confidence            47899999998888888877766   8999999999999999999877543221 12477899999999999999998 8


Q ss_pred             cCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccC----cE
Q 026140           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA----HV  167 (243)
Q Consensus        92 ~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~----~~  167 (243)
                      |++||+|+......|+                         ..                   |+|++|++++..    .+
T Consensus        81 ~~~Gd~V~~~~~~~~~-------------------------~~-------------------g~~~~~~~v~~~~~~~~~  116 (352)
T cd08247          81 WKVGDEVCGIYPHPYG-------------------------GQ-------------------GTLSQYLLVDPKKDKKSI  116 (352)
T ss_pred             CCCCCEEEEeecCCCC-------------------------CC-------------------ceeeEEEEEcccccccee
Confidence            9999999865321110                         11                   499999999987    78


Q ss_pred             EEcCCCCChhhhcccchhhHhHHHHHHHhc-CCCCCCEEEEECC-CHHHHHHHHHHHHcCC-CeEEEEcCC
Q 026140          168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTA-NVEVGSTVVIFGL-GSIGLAVAEGARLCGA-TRIIGVDVI  235 (243)
Q Consensus       168 ~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~-~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~-~~vi~~~~~  235 (243)
                      +++|+++++.+++.+++.+.|+|.++.+.. .+++|++|+|+|+ |.+|++++++|+++|. ..++++.+.
T Consensus       117 ~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~~~  187 (352)
T cd08247         117 TRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTCSS  187 (352)
T ss_pred             EECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEeCh
Confidence            999999999999999999999999876666 7899999999998 7999999999999854 356666543

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.91  E-value=5.7e-23  Score=178.43  Aligned_cols=175  Identities=28%  Similarity=0.368  Sum_probs=151.2

Q ss_pred             eeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC-CCCCCeeeecceeEEEEEeCCCCCccC
Q 026140           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGVV   93 (243)
Q Consensus        17 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~vlG~e~~G~Vv~vG~~v~~~~   93 (243)
                      |||+++.+++.+  +.+.+.+.|.+.++||+||++++++|+.|...+.+.++ ...+|.++|||++|+|+++|+++.+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~   80 (323)
T cd05276           1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWK   80 (323)
T ss_pred             CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCC
Confidence            689999886653  66777777778899999999999999999988876543 234678999999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (243)
Q Consensus        94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~  173 (243)
                      +||+|+....                              +                   |+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~------------------------------~-------------------g~~~~~~~~~~~~~~~~p~~  111 (323)
T cd05276          81 VGDRVCALLA------------------------------G-------------------GGYAEYVVVPAGQLLPVPEG  111 (323)
T ss_pred             CCCEEEEecC------------------------------C-------------------CceeEEEEcCHHHhccCCCC
Confidence            9999975321                              1                   38999999999999999999


Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +++.+++.+...+.++|.++.+...+.++++++|+|+ |++|++++++++++|+ +++++++++++.+.
T Consensus       112 ~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~-~v~~~~~~~~~~~~  179 (323)
T cd05276         112 LSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGA-RVIATAGSEEKLEA  179 (323)
T ss_pred             CCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCC-EEEEEcCCHHHHHH
Confidence            9999999999999999998777788999999999998 8999999999999999 89999888776554

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.91  E-value=9.4e-23  Score=178.26  Aligned_cols=176  Identities=29%  Similarity=0.418  Sum_probs=151.0

Q ss_pred             eeeEEeccCC--CCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCC
Q 026140           17 CRAAIATAPG--EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (243)
Q Consensus        17 ~ka~~~~~~~--~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~   94 (243)
                      |||+++.+++  ..+++++++.|.+.+++|+||+.++++|+.|+..+.+.......|.++|||++|+|+.+|++++.+++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~   80 (325)
T cd08271           1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVPGVDGAGVVVAVGAKVTGWKV   80 (325)
T ss_pred             CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCcccccceEEEEEEeCCCCCcCCC
Confidence            6999999999  34999999999999999999999999999999887665433234678999999999999999999999


Q ss_pred             CCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC
Q 026140           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (243)
Q Consensus        95 Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~  174 (243)
                      ||+|++....                           ..+                   |+|++|+.++.+.++++|+++
T Consensus        81 Gd~V~~~~~~---------------------------~~~-------------------~~~~s~~~~~~~~~~~ip~~~  114 (325)
T cd08271          81 GDRVAYHASL---------------------------ARG-------------------GSFAEYTVVDARAVLPLPDSL  114 (325)
T ss_pred             CCEEEeccCC---------------------------CCC-------------------ccceeEEEeCHHHeEECCCCC
Confidence            9999864210                           011                   389999999999999999999


Q ss_pred             ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ++.+++.+.+.+.+++.++.+..++.+|++++|+|+ |.+|++++++++.+|+ .++++. ++++.+
T Consensus       115 ~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~-~v~~~~-~~~~~~  179 (325)
T cd08271         115 SFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGL-RVITTC-SKRNFE  179 (325)
T ss_pred             CHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEE-cHHHHH
Confidence            999999999999999998777788999999999998 8999999999999999 777765 444433

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.91  E-value=8.8e-23  Score=178.11  Aligned_cols=179  Identities=27%  Similarity=0.307  Sum_probs=151.5

Q ss_pred             eeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC-CCCCCeeeecceeEEEEEeCCCCCccC
Q 026140           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGVV   93 (243)
Q Consensus        17 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~vlG~e~~G~Vv~vG~~v~~~~   93 (243)
                      |||+++..++++  +++++.+.|.+.+++|+|++.++++|+.|..+..+... ....|.++|+|++|+|+.+|+++.+|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (326)
T cd08272           1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFR   80 (326)
T ss_pred             CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Confidence            689999988865  77778888888999999999999999999988776543 123477899999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (243)
Q Consensus        94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~  173 (243)
                      +||+|+....                          +...                  ..|+|++|+.++...++++|++
T Consensus        81 ~Gd~V~~~~~--------------------------~~~~------------------~~g~~~~~~~v~~~~~~~~p~~  116 (326)
T cd08272          81 VGDEVYGCAG--------------------------GLGG------------------LQGSLAEYAVVDARLLALKPAN  116 (326)
T ss_pred             CCCEEEEccC--------------------------CcCC------------------CCCceeEEEEecHHHcccCCCC
Confidence            9999975421                          0000                  0148999999999999999999


Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +++..++.+++.+.++|.++.+..++.+|++++|+|+ |.+|++++++++.+|+ +|++++++ ++.+.
T Consensus       117 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~-~~~~~  183 (326)
T cd08272         117 LSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGA-RVYATASS-EKAAF  183 (326)
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEech-HHHHH
Confidence            9999999999999999998778889999999999996 9999999999999999 88888876 66543

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.90  E-value=8.7e-23  Score=178.85  Aligned_cols=163  Identities=24%  Similarity=0.315  Sum_probs=142.8

Q ss_pred             eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccCCCCEEEeeccCCCC
Q 026140           29 LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCT  107 (243)
Q Consensus        29 ~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~  107 (243)
                      +++++.+.|.+.+++|+||++++++|+.|..++.+.... ...|.++|+|++|+|+++|++++++++||+|++.+.    
T Consensus        14 ~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~----   89 (323)
T cd05282          14 LELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGG----   89 (323)
T ss_pred             EEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeCC----
Confidence            566777888889999999999999999999888765432 346779999999999999999999999999986431    


Q ss_pred             CCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCChhhhcccchhhH
Q 026140          108 ECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS  187 (243)
Q Consensus       108 ~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~  187 (243)
                                                .                   |+|++|+.++.+.++++|+++++.+++.+.+...
T Consensus        90 --------------------------~-------------------g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~  124 (323)
T cd05282          90 --------------------------E-------------------GTWQEYVVAPADDLIPVPDSISDEQAAMLYINPL  124 (323)
T ss_pred             --------------------------C-------------------CcceeEEecCHHHeEECCCCCCHHHHHHHhccHH
Confidence                                      1                   3899999999999999999999999999888999


Q ss_pred             hHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          188 TGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       188 ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ++|.++.....+.+|++|+|+|+ |.+|++++++|+++|+ +++++.+++++.+.
T Consensus       125 ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~  178 (323)
T cd05282         125 TAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGF-KTINVVRRDEQVEE  178 (323)
T ss_pred             HHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecChHHHHH
Confidence            99998877778899999999998 8999999999999999 88888888777654

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.90  E-value=1.2e-23  Score=157.74  Aligned_cols=108  Identities=35%  Similarity=0.542  Sum_probs=94.7

Q ss_pred             CCeEEEEEeeeecChhhhhhhhC-CCCCCCCCeeeecceeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCC
Q 026140           41 SHEVRVRIICTSLCHSDVTFWKM-KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNL  119 (243)
Q Consensus        41 ~~eVlVkv~~~~i~~~D~~~~~g-~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~  119 (243)
                      |+||||||++++||++|++++.+ .......|.++|||++|+|+++|+++++|++||+|+..+...|+.|.+|+.+..++
T Consensus         1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~   80 (109)
T PF08240_consen    1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNL   80 (109)
T ss_dssp             TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGG
T ss_pred             CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcccc
Confidence            68999999999999999999998 45567899999999999999999999999999999999988899999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEc
Q 026140          120 CSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (243)
Q Consensus       120 ~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i  170 (243)
                      |+....   .|...+|                   +|+||++++.++++|+
T Consensus        81 c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~v  109 (109)
T PF08240_consen   81 CPNPEV---LGLGLDG-------------------GFAEYVVVPARNLVPV  109 (109)
T ss_dssp             TTTBEE---TTTSSTC-------------------SSBSEEEEEGGGEEEE
T ss_pred             CCCCCE---eEcCCCC-------------------cccCeEEEehHHEEEC
Confidence            976654   5555555                   9999999999999985

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.90  E-value=2.8e-22  Score=173.85  Aligned_cols=173  Identities=30%  Similarity=0.353  Sum_probs=148.3

Q ss_pred             eeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140           18 RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (243)
Q Consensus        18 ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G   95 (243)
                      ||+.+..++.+  +.+.+.+.+.+.++||+|+|.++++|+.|+.+..+.++. .+|.++|||++|+|+.+|+++.+|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~-~~~~~~g~e~~G~v~~~g~~~~~~~~G   79 (320)
T cd05286           1 KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL-PLPFVLGVEGAGVVEAVGPGVTGFKVG   79 (320)
T ss_pred             CeEEEecCCCccceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC-CCCccCCcceeEEEEEECCCCCCCCCC
Confidence            46666666553  556677777788999999999999999999888776543 457789999999999999999999999


Q ss_pred             CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCC
Q 026140           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (243)
Q Consensus        96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~  175 (243)
                      |+|+...                              ..                   |+|++|+.++.+.++++|++++
T Consensus        80 ~~V~~~~------------------------------~~-------------------g~~~~~~~~~~~~~~~~p~~~~  110 (320)
T cd05286          80 DRVAYAG------------------------------PP-------------------GAYAEYRVVPASRLVKLPDGIS  110 (320)
T ss_pred             CEEEEec------------------------------CC-------------------CceeEEEEecHHHceeCCCCCC
Confidence            9997531                              01                   3899999999999999999999


Q ss_pred             hhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +.+++.+.+...++|.++....++.+|++|+|+|+ |++|++++++++.+|+ +|+++++++++.++
T Consensus       111 ~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~  176 (320)
T cd05286         111 DETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAEL  176 (320)
T ss_pred             HHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHH
Confidence            99999888899999998777788999999999997 9999999999999999 89999988877654

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.90  E-value=2.1e-22  Score=175.57  Aligned_cols=165  Identities=26%  Similarity=0.403  Sum_probs=137.0

Q ss_pred             ccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhh-hCCCCC--CCCCeeeecceeEEEEEeCCCCCccCCCCEEE
Q 026140           23 TAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW-KMKDFP--AVFPRILGHEAIGVVESVGENVDGVVEGDVVI   99 (243)
Q Consensus        23 ~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~-~g~~~~--~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv   99 (243)
                      ++++. +++++++.|.+.++||+|++.++++|+.|...+ .+....  ..+|.++|+|++|+|+.+|++++++++||+|+
T Consensus         2 ~~~~~-~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~   80 (312)
T cd08269           2 TGPGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVA   80 (312)
T ss_pred             CCCCe-eEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEE
Confidence            34554 899999999999999999999999999999887 665322  12478899999999999999999999999998


Q ss_pred             eeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCChhhh
Q 026140          100 PHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRA  179 (243)
Q Consensus       100 ~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a  179 (243)
                      ..+.                                                  |+|++|+.++.+.++++|+++  ..+
T Consensus        81 ~~~~--------------------------------------------------g~~~~~~~v~~~~~~~lP~~~--~~~  108 (312)
T cd08269          81 GLSG--------------------------------------------------GAFAEYDLADADHAVPLPSLL--DGQ  108 (312)
T ss_pred             EecC--------------------------------------------------CcceeeEEEchhheEECCCch--hhh
Confidence            6421                                                  389999999999999999988  223


Q ss_pred             cccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          180 CLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       180 a~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +....++.++++++. ..++++|++|+|+|+|.+|.+++++|+.+|+..|+++.+.+++.++
T Consensus       109 ~~~~~~~~~a~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~  169 (312)
T cd08269         109 AFPGEPLGCALNVFR-RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLAL  169 (312)
T ss_pred             HHhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHH
Confidence            332367788888754 7889999999999889999999999999999439999888777654

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.89  E-value=6e-22  Score=172.79  Aligned_cols=180  Identities=33%  Similarity=0.391  Sum_probs=151.5

Q ss_pred             eeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccC
Q 026140           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (243)
Q Consensus        17 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~   93 (243)
                      |||+++...+.+  +.+.+.+.|.+.+++++|++.++++|+.|..+..+.... ..+|.++|||++|+|+.+|+++.+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (328)
T cd08268           1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFA   80 (328)
T ss_pred             CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCC
Confidence            578888876643  666777778889999999999999999999887665432 24477899999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (243)
Q Consensus        94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~  173 (243)
                      +||+|+..+...                         +..+                   |++++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~-------------------------~~~~-------------------g~~~~~~~~~~~~~~~~p~~  116 (328)
T cd08268          81 VGDRVSVIPAAD-------------------------LGQY-------------------GTYAEYALVPAAAVVKLPDG  116 (328)
T ss_pred             CCCEEEeccccc-------------------------cCCC-------------------ccceEEEEechHhcEeCCCC
Confidence            999998653211                         1111                   38999999999999999999


Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +++.+++.+.+.+.++|.++.....+.++++++|+|+ |.+|++++++++..|+ +++++++++.+.+.
T Consensus       117 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~-~v~~~~~~~~~~~~  184 (328)
T cd08268         117 LSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGA-TVIATTRTSEKRDA  184 (328)
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHH
Confidence            9999999999999999998777788999999999998 9999999999999999 89998888766543

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.89  E-value=4.9e-22  Score=171.96  Aligned_cols=176  Identities=26%  Similarity=0.348  Sum_probs=147.8

Q ss_pred             eeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC---CCCCCeeeecceeEEEEEeCCCCCc
Q 026140           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDG   91 (243)
Q Consensus        17 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~vlG~e~~G~Vv~vG~~v~~   91 (243)
                      |||++++.++..  +.+.+.+.|.+.++||+|++.++++|+.|...+.+...   ....|.++|||++|+|+.+|+++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~   80 (309)
T cd05289           1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG   80 (309)
T ss_pred             CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence            678998887763  45567777778999999999999999999998877542   2345789999999999999999999


Q ss_pred             cCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcC
Q 026140           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (243)
Q Consensus        92 ~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip  171 (243)
                      +++||+|+..+..                           ...                   |+|++|+.++...++++|
T Consensus        81 ~~~G~~V~~~~~~---------------------------~~~-------------------g~~~~~~~~~~~~~~~~p  114 (309)
T cd05289          81 FKVGDEVFGMTPF---------------------------TRG-------------------GAYAEYVVVPADELALKP  114 (309)
T ss_pred             CCCCCEEEEccCC---------------------------CCC-------------------CcceeEEEecHHHhccCC
Confidence            9999999865310                           001                   389999999999999999


Q ss_pred             CCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      +++++..++.+.+.+.++|.++.....+.+|++|+|+|+ |.+|++++++++.+|+ +|+++.+++ +.+
T Consensus       115 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~-~~~  182 (309)
T cd05289         115 ANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGA-RVIATASAA-NAD  182 (309)
T ss_pred             CCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEecch-hHH
Confidence            999999999999899999998766666899999999997 9999999999999999 788887665 443

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.89  E-value=9.3e-22  Score=173.06  Aligned_cols=171  Identities=23%  Similarity=0.219  Sum_probs=141.0

Q ss_pred             eeeEEeccCCC------CeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC---CCCCCeeeecceeEEEEEeCC
Q 026140           17 CRAAIATAPGE------PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGE   87 (243)
Q Consensus        17 ~ka~~~~~~~~------~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~vlG~e~~G~Vv~vG~   87 (243)
                      +|||++.+.+.      .+++++++.|.+.+++|+||+.++++|+.|.....+...   +...+.++|+|++|+|+++|.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~   81 (329)
T cd05288           2 NRQVVLAKRPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRS   81 (329)
T ss_pred             CcEEEEeccCCCCCCccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCC
Confidence            67888876652      288899999999999999999999999988765554321   112345789999999999996


Q ss_pred             CCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEecc-Cc
Q 026140           88 NVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI-AH  166 (243)
Q Consensus        88 ~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~-~~  166 (243)
                      +  +|++||+|+..                                                    ++|++|+.++. +.
T Consensus        82 ~--~~~~Gd~V~~~----------------------------------------------------~~~~~~~~v~~~~~  107 (329)
T cd05288          82 P--DFKVGDLVSGF----------------------------------------------------LGWQEYAVVDGASG  107 (329)
T ss_pred             C--CCCCCCEEecc----------------------------------------------------cceEEEEEecchhh
Confidence            4  79999999632                                                    27999999999 99


Q ss_pred             EEEcCCCCC--hhhhcc-cchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          167 VVKVDPTVP--PNRACL-LSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       167 ~~~ip~~~~--~~~aa~-~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++++|++++  +.+++. +.+.+.++|+++.....+.++++|+|+|+ |++|++++++++++|+ +|+++++++++.+.+
T Consensus       108 ~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~-~vi~~~~~~~~~~~~  186 (329)
T cd05288         108 LRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGIAGSDEKCRWL  186 (329)
T ss_pred             cEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            999999985  545555 88899999998777778899999999996 9999999999999999 899999888776543

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.88  E-value=3.2e-21  Score=167.95  Aligned_cols=175  Identities=28%  Similarity=0.334  Sum_probs=149.3

Q ss_pred             eeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccC
Q 026140           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (243)
Q Consensus        17 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~   93 (243)
                      |||+.+..++.+  +++.+.+.|.+.+++++|++.++++|+.|.....+.+.. ..+|.++|||++|+|+.+|+++.+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~   80 (325)
T TIGR02824         1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWK   80 (325)
T ss_pred             CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCC
Confidence            578888776654  566676666788999999999999999999887665422 34578899999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (243)
Q Consensus        94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~  173 (243)
                      +||+|+....                              +                   |+|++|+.++...++++|++
T Consensus        81 ~Gd~V~~~~~------------------------------~-------------------~~~~~~~~~~~~~~~~ip~~  111 (325)
T TIGR02824        81 VGDRVCALVA------------------------------G-------------------GGYAEYVAVPAGQVLPVPEG  111 (325)
T ss_pred             CCCEEEEccC------------------------------C-------------------CcceeEEEecHHHcEeCCCC
Confidence            9999975311                              1                   38999999999999999999


Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +++.+++.+.+...++|.++.+...+.++++++|+|+ |++|++++++++.+|+ +|+++.+++++.++
T Consensus       112 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~  179 (325)
T TIGR02824       112 LSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGA-RVFTTAGSDEKCAA  179 (325)
T ss_pred             CCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence            9999999999999999998778889999999999997 9999999999999999 89999888776543

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.87  E-value=1.5e-21  Score=173.79  Aligned_cols=176  Identities=28%  Similarity=0.425  Sum_probs=135.2

Q ss_pred             eeeEEeccCCCC---eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCC----CCCeeeecceeEEEEE---eC
Q 026140           17 CRAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPA----VFPRILGHEAIGVVES---VG   86 (243)
Q Consensus        17 ~ka~~~~~~~~~---~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~----~~p~vlG~e~~G~Vv~---vG   86 (243)
                      ++.+.+..+.+.   ....+.++|.|+++|++|++.++++|+.|..++.+.+...    .+|.+++.++.|.+..   +|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g   84 (347)
T KOG1198|consen    5 IRRVSLVSPPGGGEVLFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVG   84 (347)
T ss_pred             cceEEEeccCCCcceEEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccc
Confidence            444444444433   3346788999999999999999999999999999877443    4676666666555333   33


Q ss_pred             -CCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccC
Q 026140           87 -ENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA  165 (243)
Q Consensus        87 -~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~  165 (243)
                       ..+..+..||.+...                                                 ...|+|+||+++|..
T Consensus        85 ~~~~~~~~~g~~~~~~-------------------------------------------------~~~g~~aey~v~p~~  115 (347)
T KOG1198|consen   85 DDVVGGWVHGDAVVAF-------------------------------------------------LSSGGLAEYVVVPEK  115 (347)
T ss_pred             cccccceEeeeEEeec-------------------------------------------------cCCCceeeEEEcchh
Confidence             222334555544321                                                 112599999999999


Q ss_pred             cEEEcCCCCChhhhcccchhhHhHHHHHHHhc------CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          166 HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA------NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       166 ~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~------~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      .++++|+++++.+||+++.++.|||.++....      +.++|+.|||+|+ |++|++++|+|+..++ ..+++.+++++
T Consensus       116 ~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~-~~v~t~~s~e~  194 (347)
T KOG1198|consen  116 LLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGA-IKVVTACSKEK  194 (347)
T ss_pred             hccCCCCccChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCC-cEEEEEcccch
Confidence            99999999999999999999999999999999      8999999999987 8999999999999996 55555567777


Q ss_pred             hhcC
Q 026140          239 FEIG  242 (243)
Q Consensus       239 ~~~~  242 (243)
                      ++++
T Consensus       195 ~~l~  198 (347)
T KOG1198|consen  195 LELV  198 (347)
T ss_pred             HHHH
Confidence            7664

>cd08251 polyketide_synthase polyketide synthase

Probab=99.87  E-value=3e-21  Score=166.78  Aligned_cols=157  Identities=28%  Similarity=0.341  Sum_probs=137.1

Q ss_pred             cCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccC
Q 026140           36 VDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRS  114 (243)
Q Consensus        36 ~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~  114 (243)
                      .|.+.+++|+|++.++++|+.|...+.+.++. ..+|.++|+|++|+|+++|+++.+|++||+|+.....          
T Consensus         2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~----------   71 (303)
T cd08251           2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGE----------   71 (303)
T ss_pred             CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCC----------
Confidence            57788999999999999999999988776532 3568899999999999999999999999999865321          


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHH
Q 026140          115 KKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW  194 (243)
Q Consensus       115 ~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~  194 (243)
                                        .+                   |+|++|+.++.+.++++|+++++++++.+++.+.++|.++ 
T Consensus        72 ------------------~~-------------------g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l-  113 (303)
T cd08251          72 ------------------SM-------------------GGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF-  113 (303)
T ss_pred             ------------------CC-------------------cceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-
Confidence                              01                   3899999999999999999999999999999999999975 


Q ss_pred             HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          195 RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       195 ~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +...+++|++++|+|+ |.+|++++++++.+|+ +++++.+++++.+.
T Consensus       114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~  160 (303)
T cd08251         114 ARAGLAKGEHILIQTATGGTGLMAVQLARLKGA-EIYATASSDDKLEY  160 (303)
T ss_pred             HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHH
Confidence            6788999999999976 9999999999999999 89999888766554

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.87  E-value=4.3e-21  Score=167.32  Aligned_cols=163  Identities=26%  Similarity=0.294  Sum_probs=139.6

Q ss_pred             EEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC---CCCCCeeeecceeEEEEEeCCCCCccCCCCEEEeeccCCC
Q 026140           30 VIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADC  106 (243)
Q Consensus        30 ~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~  106 (243)
                      ++++.+.|.|.++||+|+++++++|+.|...+.+..+   ....|.++|+|++|+|.++|+++.++.+||+|+...... 
T Consensus        15 ~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~-   93 (319)
T cd08267          15 LEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPPK-   93 (319)
T ss_pred             ccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccCC-
Confidence            6678888889999999999999999999998877542   123567899999999999999999999999997653210 


Q ss_pred             CCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCChhhhcccchhh
Q 026140          107 TECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV  186 (243)
Q Consensus       107 ~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~  186 (243)
                                                ..                   |+|++|+.++.+.++++|++++..+++.+.+.+
T Consensus        94 --------------------------~~-------------------g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~  128 (319)
T cd08267          94 --------------------------GG-------------------GALAEYVVAPESGLAKKPEGVSFEEAAALPVAG  128 (319)
T ss_pred             --------------------------CC-------------------ceeeEEEEechhheEECCCCCCHHHHHhhhhHH
Confidence                                      01                   389999999999999999999999999999999


Q ss_pred             HhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          187 STGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       187 ~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      .++|+++.....+.+|++|+|+|+ |++|++++++|+.+|+ +|++++++ ++.+
T Consensus       129 ~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~-~v~~~~~~-~~~~  181 (319)
T cd08267         129 LTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGA-HVTGVCST-RNAE  181 (319)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCH-HHHH
Confidence            999998777777899999999998 9999999999999999 88888754 4443

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.87  E-value=1.3e-20  Score=163.76  Aligned_cols=174  Identities=32%  Similarity=0.446  Sum_probs=146.4

Q ss_pred             eeeEEeccCCCC--eEEEEEecCCCC-CCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCcc
Q 026140           17 CRAAIATAPGEP--LVIDEVIVDPPN-SHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGV   92 (243)
Q Consensus        17 ~ka~~~~~~~~~--~~~~e~~~p~~~-~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~   92 (243)
                      |||+++..++.+  +++.+.+ |.+. +++++|++.++++|+.|..++.+.+.. ...|.++|+|++|+|+.+|+++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~   79 (323)
T cd08241           1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGF   79 (323)
T ss_pred             CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCC
Confidence            578888755443  6666766 6666 499999999999999999887765432 2346689999999999999999999


Q ss_pred             CCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCC
Q 026140           93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (243)
Q Consensus        93 ~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~  172 (243)
                      ++||+|+....                              .                   |++++|+.++.+.++++|+
T Consensus        80 ~~G~~V~~~~~------------------------------~-------------------~~~~~~~~~~~~~~~~ip~  110 (323)
T cd08241          80 KVGDRVVALTG------------------------------Q-------------------GGFAEEVVVPAAAVFPLPD  110 (323)
T ss_pred             CCCCEEEEecC------------------------------C-------------------ceeEEEEEcCHHHceeCCC
Confidence            99999986420                              1                   3899999999999999999


Q ss_pred             CCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       173 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +++..+++.+.+...++|.++....++.++++|+|+|+ |++|++++++++..|+ .|+++++++++.+.
T Consensus       111 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~  179 (323)
T cd08241         111 GLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLAL  179 (323)
T ss_pred             CCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCC-EEEEEeCCHHHHHH
Confidence            99998888888899999998766788999999999998 9999999999999999 79999888776554

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.85  E-value=1.7e-20  Score=160.28  Aligned_cols=147  Identities=27%  Similarity=0.267  Sum_probs=130.7

Q ss_pred             CeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCC
Q 026140           42 HEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCS  121 (243)
Q Consensus        42 ~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~  121 (243)
                      +||+||+.++++|+.|.....+..  ..+|.++|+|++|+|+++|+++..|++||+|+...                   
T Consensus         1 ~~v~i~v~~~~~~~~d~~~~~g~~--~~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~-------------------   59 (293)
T cd05195           1 DEVEVEVKAAGLNFRDVLVALGLL--PGDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA-------------------   59 (293)
T ss_pred             CceEEEEEEEecCHHHHHHHhCCC--CCCCCccceeeeEEEEeecCCccCCCCCCEEEEEe-------------------
Confidence            589999999999999999887754  24578899999999999999999999999997542                   


Q ss_pred             CCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCC
Q 026140          122 AFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEV  201 (243)
Q Consensus       122 ~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~  201 (243)
                                                     .|+|++|+.++.+.++++|+++++.+++.+.+...++|.++.+...+++
T Consensus        60 -------------------------------~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  108 (293)
T cd05195          60 -------------------------------PGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQK  108 (293)
T ss_pred             -------------------------------cCcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCC
Confidence                                           1389999999999999999999999999998999999998777788999


Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       202 g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      |++|+|+|+ |.+|++++++++.+|+ +++++++++++.++
T Consensus       109 g~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~  148 (293)
T cd05195         109 GESVLIHAAAGGVGQAAIQLAQHLGA-EVFATVGSEEKREF  148 (293)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence            999999986 9999999999999999 89999887766544

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.85  E-value=1.1e-19  Score=159.49  Aligned_cols=158  Identities=25%  Similarity=0.304  Sum_probs=136.1

Q ss_pred             eeEEeccCCC--CeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccCC
Q 026140           18 RAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVE   94 (243)
Q Consensus        18 ka~~~~~~~~--~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~~   94 (243)
                      ||+++...+.  .+.+++.+.|.|.+++|+||+.++++|+.|..++.+.+.. ...|.++|+|++|+|+.+|+++.+|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~   80 (337)
T cd08275           1 RAVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKV   80 (337)
T ss_pred             CeEEEcCCCCccceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCC
Confidence            4666665554  2677777778889999999999999999999988775432 245778999999999999999999999


Q ss_pred             CCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC
Q 026140           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (243)
Q Consensus        95 Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~  174 (243)
                      ||+|+....                              +                   |+|++|+.++.+.++++|+++
T Consensus        81 G~~V~~~~~------------------------------~-------------------~~~~~~~~~~~~~~~~ip~~~  111 (337)
T cd08275          81 GDRVMGLTR------------------------------F-------------------GGYAEVVNVPADQVFPLPDGM  111 (337)
T ss_pred             CCEEEEecC------------------------------C-------------------CeeeeEEEecHHHeEECCCCC
Confidence            999976421                              1                   389999999999999999999


Q ss_pred             ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHc
Q 026140          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLC  224 (243)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~  224 (243)
                      ++.+++.+.+.+.++|.++....+.++|++|+|+|+ |.+|++++++++.+
T Consensus       112 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~  162 (337)
T cd08275         112 SFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTV  162 (337)
T ss_pred             CHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHc
Confidence            999999999999999998877888999999999998 99999999999998

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>smart00829 PKS_ER Enoylreductase

Probab=99.83  E-value=1.5e-19  Score=154.53  Aligned_cols=142  Identities=27%  Similarity=0.267  Sum_probs=127.0

Q ss_pred             EEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCC
Q 026140           46 VRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPF  125 (243)
Q Consensus        46 Vkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~  125 (243)
                      ||+.++++|+.|...+.+.++   .|.++|+|++|+|+++|+.+++|++||+|+....                      
T Consensus         2 i~v~~~~i~~~d~~~~~g~~~---~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~----------------------   56 (288)
T smart00829        2 VEVRAAGLNFRDVLIALGLLP---GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLAP----------------------   56 (288)
T ss_pred             eeEEEEecCHHHHHHhcCCCC---CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEcC----------------------
Confidence            789999999999998877543   3578999999999999999999999999975421                      


Q ss_pred             CCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEE
Q 026140          126 KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTV  205 (243)
Q Consensus       126 ~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~V  205 (243)
                                                  |+|++|+.++.+.++++|+++++.+++.+.+.+.++|.++.+...+.+|++|
T Consensus        57 ----------------------------g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~v  108 (288)
T smart00829       57 ----------------------------GSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESV  108 (288)
T ss_pred             ----------------------------CceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEE
Confidence                                        3899999999999999999999999999999999999987677889999999


Q ss_pred             EEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          206 VIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       206 lI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +|+|+ |.+|++++++++.+|+ +|+++++++++.++
T Consensus       109 lv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~  144 (288)
T smart00829      109 LIHAAAGGVGQAAIQLAQHLGA-EVFATAGSPEKRDF  144 (288)
T ss_pred             EEecCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence            99996 9999999999999999 89999988877654

Enoylreductase in Polyketide synthases.

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.82  E-value=1.6e-19  Score=154.02  Aligned_cols=160  Identities=26%  Similarity=0.288  Sum_probs=127.8

Q ss_pred             eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEe--CCCCCccCCCCEEEeeccCCC
Q 026140           29 LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESV--GENVDGVVEGDVVIPHFLADC  106 (243)
Q Consensus        29 ~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~v--G~~v~~~~~Gd~Vv~~~~~~~  106 (243)
                      |++++.++|+|++||||||++|.+++|....-++.... =-.|+-+|....|.++..  -|+...|++||.|+..     
T Consensus        27 F~lee~~vp~p~~GqvLl~~~ylS~DPymRgrm~d~~S-Y~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~-----  100 (340)
T COG2130          27 FRLEEVDVPEPGEGQVLLRTLYLSLDPYMRGRMSDAPS-YAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGV-----  100 (340)
T ss_pred             ceeEeccCCCCCcCceEEEEEEeccCHHHeecccCCcc-cCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEec-----
Confidence            99999999999999999999999999954433332221 134555665555554442  2667789999999643     


Q ss_pred             CCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC-Chh-hhcccch
Q 026140          107 TECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV-PPN-RACLLSC  184 (243)
Q Consensus       107 ~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~-~~~-~aa~~~~  184 (243)
                                                                     .+|++|.+++.+.+.+++... ++. ....+.+
T Consensus       101 -----------------------------------------------~GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGm  133 (340)
T COG2130         101 -----------------------------------------------SGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGM  133 (340)
T ss_pred             -----------------------------------------------ccceEEEeechhhceecCCCCCCcchHHhhcCC
Confidence                                                           289999999999999997543 222 2234677


Q ss_pred             hhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          185 GVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       185 ~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +..|||.+|++.+..++|++|+|.+| |++|..+.|+||..|+ +||.+..+++|.+.+
T Consensus       134 pG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~-rVVGiaGg~eK~~~l  191 (340)
T COG2130         134 PGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFL  191 (340)
T ss_pred             chHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCC-eEEEecCCHHHHHHH
Confidence            99999999999999999999999998 9999999999999999 999999999998765

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.73  E-value=3.9e-17  Score=140.55  Aligned_cols=119  Identities=31%  Similarity=0.477  Sum_probs=107.3

Q ss_pred             CCCeeeecceeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceee
Q 026140           69 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH  148 (243)
Q Consensus        69 ~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~  148 (243)
                      .+|.++|+|++|+|+++|+++++|++||+|+..                                               
T Consensus        19 ~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~-----------------------------------------------   51 (277)
T cd08255          19 PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF-----------------------------------------------   51 (277)
T ss_pred             cCCcccCcceeEEEEEeCCCCCCCCCCCEEEec-----------------------------------------------
Confidence            588999999999999999999999999999753                                               


Q ss_pred             cccccceeeeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Q 026140          149 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATR  228 (243)
Q Consensus       149 ~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~  228 (243)
                           +.|++|++++.+.++++|+++++.+++.+ +.+.++|+++ ...++++|++++|+|+|++|++++++|+.+|+++
T Consensus        52 -----~~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~  124 (277)
T cd08255          52 -----GPHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGV-RDAEPRLGERVAVVGLGLVGLLAAQLAKAAGARE  124 (277)
T ss_pred             -----CCcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Confidence                 16899999999999999999999998888 7899999975 5788999999999988999999999999999944


Q ss_pred             EEEEcCCchhhhc
Q 026140          229 IIGVDVISEKFEI  241 (243)
Q Consensus       229 vi~~~~~~~~~~~  241 (243)
                      |+++++++++.++
T Consensus       125 vi~~~~~~~~~~~  137 (277)
T cd08255         125 VVGVDPDAARREL  137 (277)
T ss_pred             EEEECCCHHHHHH
Confidence            9999998888764

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.65  E-value=1.3e-14  Score=123.96  Aligned_cols=173  Identities=21%  Similarity=0.193  Sum_probs=125.7

Q ss_pred             eeeeEEeccCCC--C----eEE--EEEecC-CCCCCeEEEEEeeeecChhhhhhhhC-CCCCCCCCeeee----cceeEE
Q 026140           16 QCRAAIATAPGE--P----LVI--DEVIVD-PPNSHEVRVRIICTSLCHSDVTFWKM-KDFPAVFPRILG----HEAIGV   81 (243)
Q Consensus        16 ~~ka~~~~~~~~--~----~~~--~e~~~p-~~~~~eVlVkv~~~~i~~~D~~~~~g-~~~~~~~p~vlG----~e~~G~   81 (243)
                      ++|.|++.....  |    |.+  .+.+++ .+++++||||.+|-++.|....-++. +...--.|+.+|    ..++|+
T Consensus         3 ~nkqvvLk~y~~g~P~~~d~~~~~~~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~k   82 (343)
T KOG1196|consen    3 TNKQVILKNYVTGFPTESDFEFTTTTVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVAK   82 (343)
T ss_pred             cccEEEEeccCCCCCccccceeeeeeecccCCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceEE
Confidence            345566655322  1    333  444544 45899999999999998876544432 111111222222    378999


Q ss_pred             EEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEE
Q 026140           82 VESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTV  161 (243)
Q Consensus        82 Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~  161 (243)
                      |++.  +-+++++||.|+...                                                    +|.+|.+
T Consensus        83 Vi~S--~~~~~~~GD~v~g~~----------------------------------------------------gWeeysi  108 (343)
T KOG1196|consen   83 VIDS--GHPNYKKGDLVWGIV----------------------------------------------------GWEEYSV  108 (343)
T ss_pred             EEec--CCCCCCcCceEEEec----------------------------------------------------cceEEEE
Confidence            9995  556799999996431                                                    7999999


Q ss_pred             eccC--cEEEcC--CCCChhhhc-ccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          162 LDIA--HVVKVD--PTVPPNRAC-LLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       162 v~~~--~~~~ip--~~~~~~~aa-~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      ++..  ..++++  .+.++.... .+.++..|||...++....+.|++|+|.|| |.+|+++.|+|+.+|+ +||+...+
T Consensus       109 i~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc-~VVGsaGS  187 (343)
T KOG1196|consen  109 ITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGC-YVVGSAGS  187 (343)
T ss_pred             ecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCC-EEEEecCC
Confidence            9664  344544  456665544 567799999999889999999999999998 9999999999999999 99999999


Q ss_pred             chhhhcCC
Q 026140          236 SEKFEIGE  243 (243)
Q Consensus       236 ~~~~~~~~  243 (243)
                      ++|.++++
T Consensus       188 ~EKv~ll~  195 (343)
T KOG1196|consen  188 KEKVDLLK  195 (343)
T ss_pred             hhhhhhhH
Confidence            99988763

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.47  E-value=6e-14  Score=136.10  Aligned_cols=143  Identities=19%  Similarity=0.107  Sum_probs=125.5

Q ss_pred             CCCeEEEEEeeeecChhhhhhhhCCCCCCCC-------CeeeecceeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccc
Q 026140           40 NSHEVRVRIICTSLCHSDVTFWKMKDFPAVF-------PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGC  112 (243)
Q Consensus        40 ~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~-------p~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c  112 (243)
                      .++.=+--|-|+.||..|+.+.+|+.++...       .+++|-||+|+          ..-|.||              
T Consensus      1443 ~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGR----------d~~GrRv-------------- 1498 (2376)
T KOG1202|consen 1443 CPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGR----------DASGRRV-------------- 1498 (2376)
T ss_pred             CCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccc----------cCCCcEE--------------
Confidence            5666688999999999999999998766433       37899999998          3568898              


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHH
Q 026140          113 RSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA  192 (243)
Q Consensus       113 ~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~  192 (243)
                                      +|+....                   ++++-+.++.+++|.+|++-..++|+..+|.+.|+|+|
T Consensus      1499 ----------------M~mvpAk-------------------sLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYA 1543 (2376)
T KOG1202|consen 1499 ----------------MGMVPAK-------------------SLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYA 1543 (2376)
T ss_pred             ----------------EEeeehh-------------------hhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhh
Confidence                            4444433                   78899999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          193 AWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       193 l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++.+...++|++|||+++ |++|++++.+|.+.|+ +|+-+..+.+|++.+
T Consensus      1544 LVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~-~VFTTVGSaEKRefL 1593 (2376)
T KOG1202|consen 1544 LVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGC-TVFTTVGSAEKREFL 1593 (2376)
T ss_pred             hhhhccccCCcEEEEecCCCchhHHHHHHHHHcCC-EEEEecCcHHHHHHH
Confidence            999999999999999955 9999999999999999 999999999998865

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.43  E-value=0.0002  Score=67.16  Aligned_cols=43  Identities=28%  Similarity=0.251  Sum_probs=40.2

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ..++++|+|+|+|++|+++++.|+.+|+ +|++++++++|++.+
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~a  204 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQV  204 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4689999999999999999999999999 899999999998875

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.35  E-value=3.6e-06  Score=77.27  Aligned_cols=126  Identities=18%  Similarity=0.158  Sum_probs=81.3

Q ss_pred             eeecceeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccc
Q 026140           73 ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVS  152 (243)
Q Consensus        73 vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~  152 (243)
                      .-|.|+++.+.+|+++++..-+|+     +.. ||.|.+|    ++.|.....   .|...+                  
T Consensus        89 ~~~~~a~~hl~~Va~GldS~V~GE-----~qI-~gQvk~a----~~~a~~~~~---~g~~l~------------------  137 (417)
T TIGR01035        89 LTGESAVEHLFRVASGLDSMVVGE-----TQI-LGQVKNA----YKVAQEEKT---VGKVLE------------------  137 (417)
T ss_pred             cCchHHHHHHHHHHhhhhhhhcCC-----hHH-HHHHHHH----HHHHHHcCC---chHHHH------------------
Confidence            468999999999999987744444     444 8888888    333333222   122222                  


Q ss_pred             cceeeeeEEeccCcEEE---c-CCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Q 026140          153 VSSFSEYTVLDIAHVVK---V-DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATR  228 (243)
Q Consensus       153 ~g~~~~~~~v~~~~~~~---i-p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~  228 (243)
                       +.|++++.++. .+..   + +..++...+|         ...+....+..++++|+|+|+|.+|..+++.++..|+.+
T Consensus       138 -~lf~~a~~~~k-~vr~~t~i~~~~vSv~~~A---------v~la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~  206 (417)
T TIGR01035       138 -RLFQKAFSVGK-RVRTETDISAGAVSISSAA---------VELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVGK  206 (417)
T ss_pred             -HHHHHHHHHhh-hhhhhcCCCCCCcCHHHHH---------HHHHHHHhCCccCCEEEEECChHHHHHHHHHHHHCCCCE
Confidence             37888887764 3322   2 1122222111         111223334578899999999999999999999999768


Q ss_pred             EEEEcCCchhhh
Q 026140          229 IIGVDVISEKFE  240 (243)
Q Consensus       229 vi~~~~~~~~~~  240 (243)
                      |++++++.++..
T Consensus       207 V~v~~rs~~ra~  218 (417)
T TIGR01035       207 ILIANRTYERAE  218 (417)
T ss_pred             EEEEeCCHHHHH
Confidence            999999887643

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.19  E-value=0.00088  Score=61.36  Aligned_cols=52  Identities=25%  Similarity=0.314  Sum_probs=43.5

Q ss_pred             HHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          190 VGAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       190 ~~~l~~~~~-~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +.++.+..+ ..+|++|+|+|.|++|+.+++.++.+|+ +|+++++++.|++.+
T Consensus       189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A  241 (413)
T cd00401         189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQA  241 (413)
T ss_pred             HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHH
Confidence            444555444 4789999999999999999999999999 899999998887654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=96.92  E-value=0.0027  Score=54.21  Aligned_cols=81  Identities=22%  Similarity=0.231  Sum_probs=52.7

Q ss_pred             eeeeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026140          155 SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  234 (243)
Q Consensus       155 ~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~  234 (243)
                      +|.+|.. +...++.+++.++|..+. .+.... ....+.  ....++++||-+|.|. |.+++.++ ..|+.+|++++.
T Consensus        78 ~~~~~~~-~~~~~i~i~p~~afgtg~-h~tt~~-~l~~l~--~~~~~~~~VLDiGcGs-G~l~i~~~-~~g~~~v~giDi  150 (250)
T PRK00517         78 SWEDPPD-PDEINIELDPGMAFGTGT-HPTTRL-CLEALE--KLVLPGKTVLDVGCGS-GILAIAAA-KLGAKKVLAVDI  150 (250)
T ss_pred             CCcCCCC-CCeEEEEECCCCccCCCC-CHHHHH-HHHHHH--hhcCCCCEEEEeCCcH-HHHHHHHH-HcCCCeEEEEEC
Confidence            4555543 667788888888877654 221111 122121  1256899999999986 87777554 467767999999


Q ss_pred             CchhhhcC
Q 026140          235 ISEKFEIG  242 (243)
Q Consensus       235 ~~~~~~~~  242 (243)
                      ++..++.+
T Consensus       151 s~~~l~~A  158 (250)
T PRK00517        151 DPQAVEAA  158 (250)
T ss_pred             CHHHHHHH
Confidence            98776644

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.84  E-value=0.00073  Score=59.71  Aligned_cols=73  Identities=21%  Similarity=0.196  Sum_probs=56.0

Q ss_pred             cEEEcCCCCChhhhcccchhhHhHHHHHHHhc---CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          166 HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA---NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       166 ~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~---~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                      ..+++|+.++.+.++... +..+++.++....   +..++.+|+|+|+|.+|..+++.++..|+.+|++++++.+|.
T Consensus       140 ~a~~~~k~vr~et~i~~~-~~sv~~~Av~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra  215 (311)
T cd05213         140 KAIKVGKRVRTETGISRG-AVSISSAAVELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERA  215 (311)
T ss_pred             HHHHHHHHHhhhcCCCCC-CcCHHHHHHHHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHH
Confidence            556778888888777665 5566665532222   224799999999999999999999998877899999988764

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.64  E-value=0.0094  Score=54.85  Aligned_cols=51  Identities=31%  Similarity=0.332  Sum_probs=41.6

Q ss_pred             HHHHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          189 GVGAAWRTANV-EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       189 a~~~l~~~~~~-~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      .|.++.+..+. ..|++|+|+|.|.+|+.+++.++.+|+ +|+++++++.|..
T Consensus       198 ~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~  249 (425)
T PRK05476        198 LLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICAL  249 (425)
T ss_pred             hHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhH
Confidence            35544444344 489999999999999999999999999 8999998887643

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.61  E-value=0.0048  Score=47.70  Aligned_cols=44  Identities=30%  Similarity=0.316  Sum_probs=38.9

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       198 ~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      .--.+++++|+|+|++|.+++..+...|+++++++.|+.+|.+.
T Consensus         8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~   51 (135)
T PF01488_consen    8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEA   51 (135)
T ss_dssp             STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHH
T ss_pred             CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence            34578999999999999999999999999889999999887653

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=96.31  E-value=0.0065  Score=57.08  Aligned_cols=42  Identities=29%  Similarity=0.272  Sum_probs=38.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      .++.+|+|+|+|.+|++++++++.+|+ .|+++++++++++.+
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a  203 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQV  203 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            467899999999999999999999999 799999999887764

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.29  E-value=0.011  Score=54.10  Aligned_cols=50  Identities=34%  Similarity=0.409  Sum_probs=40.6

Q ss_pred             HHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          190 VGAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       190 ~~~l~~~~~-~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      +.++.+..+ ...|++|+|+|.|.+|+.+++.++.+|+ +|+++++++.|..
T Consensus       182 ~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~  232 (406)
T TIGR00936       182 IDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRAL  232 (406)
T ss_pred             HHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHH
Confidence            333444434 4789999999999999999999999999 8999988876643

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=95.93  E-value=0.0095  Score=54.92  Aligned_cols=127  Identities=20%  Similarity=0.148  Sum_probs=75.0

Q ss_pred             eeecceeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccc
Q 026140           73 ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVS  152 (243)
Q Consensus        73 vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~  152 (243)
                      .-|+|+++.+.+|+++++..-+|+.-+      ||.|...   + +.|.....   .|...+                  
T Consensus        91 ~~g~ea~~hl~~V~~GldS~V~GE~qI------lgQvk~a---~-~~a~~~g~---~g~~l~------------------  139 (423)
T PRK00045         91 HEGEEAVRHLFRVASGLDSMVLGEPQI------LGQVKDA---Y-ALAQEAGT---VGTILN------------------  139 (423)
T ss_pred             cCCHHHHHHHHHHHhhhhhhhcCChHH------HHHHHHH---H-HHHHHcCC---chHHHH------------------
Confidence            469999999999999988766666433      3333311   1 11111110   010001                  


Q ss_pred             cceeeeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHHhc---CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeE
Q 026140          153 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA---NVEVGSTVVIFGLGSIGLAVAEGARLCGATRI  229 (243)
Q Consensus       153 ~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~---~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~v  229 (243)
                       +.|++.+.+        |+.+..+.+.. ..+.+.++.++....   ...++++|+|+|+|.+|.++++.++..|+.+|
T Consensus       140 -~lf~~a~~~--------~k~v~~~t~i~-~~~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V  209 (423)
T PRK00045        140 -RLFQKAFSV--------AKRVRTETGIG-AGAVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKI  209 (423)
T ss_pred             -HHHHHHHHH--------HhhHhhhcCCC-CCCcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeE
Confidence             244443333        34333322222 224444455432221   23678999999999999999999999998789


Q ss_pred             EEEcCCchhhh
Q 026140          230 IGVDVISEKFE  240 (243)
Q Consensus       230 i~~~~~~~~~~  240 (243)
                      ++++++.++..
T Consensus       210 ~v~~r~~~ra~  220 (423)
T PRK00045        210 TVANRTLERAE  220 (423)
T ss_pred             EEEeCCHHHHH
Confidence            99999887743

>PLN02494 adenosylhomocysteinase

Probab=95.87  E-value=0.021  Score=53.03  Aligned_cols=49  Identities=27%  Similarity=0.389  Sum_probs=40.7

Q ss_pred             HHHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          190 VGAAWRTANV-EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       190 ~~~l~~~~~~-~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                      +.++.+..+. ..|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+.
T Consensus       241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~  290 (477)
T PLN02494        241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICA  290 (477)
T ss_pred             HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhh
Confidence            4445555443 679999999999999999999999999 899999887653

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.70  E-value=0.043  Score=48.20  Aligned_cols=40  Identities=25%  Similarity=0.395  Sum_probs=36.1

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      -.+++++|+|.|.+|+.+++.++.+|+ +|++++++.++.+
T Consensus       150 l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~  189 (296)
T PRK08306        150 IHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLA  189 (296)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence            368999999999999999999999999 9999999977643

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=95.46  E-value=0.03  Score=53.42  Aligned_cols=37  Identities=24%  Similarity=0.319  Sum_probs=33.3

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       198 ~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      ....|++|+|+|+|+.|+.+++.++.+|+ +|++++..
T Consensus       133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~  169 (564)
T PRK12771        133 APDTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAG  169 (564)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence            36789999999999999999999999999 79988854

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=95.32  E-value=0.064  Score=46.80  Aligned_cols=41  Identities=29%  Similarity=0.291  Sum_probs=36.7

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..+++|+|+|+|+.|.+++..+..+|+.+|++++++.+|.+
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~  165 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAA  165 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            45689999999999999999999999989999999987754

>TIGR00518 alaDH alanine dehydrogenase

Probab=95.31  E-value=0.029  Score=50.78  Aligned_cols=39  Identities=26%  Similarity=0.325  Sum_probs=34.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ++.+|+|+|+|.+|+.+++.++.+|+ +|++++++.++++
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~  204 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLR  204 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHH
Confidence            45679999999999999999999999 8999999877654

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK08324 short chain dehydrogenase; Validated

Probab=95.18  E-value=0.026  Score=55.10  Aligned_cols=74  Identities=22%  Similarity=0.233  Sum_probs=53.4

Q ss_pred             eeeeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEc
Q 026140          155 SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD  233 (243)
Q Consensus       155 ~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~  233 (243)
                      ++++|..++...++.+ +..+.+++.....          ......+|+++||.|+ |++|..+++.+...|+ +|++++
T Consensus       386 ~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~----------~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~  453 (681)
T PRK08324        386 AVGRYEPLSEQEAFDI-EYWSLEQAKLQRM----------PKPKPLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLAD  453 (681)
T ss_pred             hcCCccCCChhhhcce-eeehhhhhhhhcC----------CCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEe
Confidence            5677777777666666 5555555532110          0122347899999997 9999999999999999 899999


Q ss_pred             CCchhhh
Q 026140          234 VISEKFE  240 (243)
Q Consensus       234 ~~~~~~~  240 (243)
                      ++.++++
T Consensus       454 r~~~~~~  460 (681)
T PRK08324        454 LDEEAAE  460 (681)
T ss_pred             CCHHHHH
Confidence            9887654

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=95.10  E-value=0.056  Score=43.68  Aligned_cols=40  Identities=40%  Similarity=0.478  Sum_probs=34.8

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                      .-.|++|.|+|.|.+|..+++.++.+|+ +|++.++.....
T Consensus        33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~   72 (178)
T PF02826_consen   33 ELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPE   72 (178)
T ss_dssp             -STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHH
T ss_pred             ccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChh
Confidence            3568999999999999999999999999 999999987653

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=95.04  E-value=0.092  Score=45.56  Aligned_cols=43  Identities=26%  Similarity=0.132  Sum_probs=37.1

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       198 ~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      +...+++++|+|+|+.+.+++..+..+|+.+++++.|+.+|.+
T Consensus       118 ~~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~  160 (272)
T PRK12550        118 QVPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGK  160 (272)
T ss_pred             CCCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHH
Confidence            4445679999999999999999999999988999999987754

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.01  E-value=0.056  Score=43.27  Aligned_cols=39  Identities=31%  Similarity=0.400  Sum_probs=32.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      +..+|+|+|+|.+|+.++.+++.+|+ +++..+...++++
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~   57 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLR   57 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHH
Confidence            44789999999999999999999999 8999998877654

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=94.90  E-value=0.11  Score=45.37  Aligned_cols=39  Identities=28%  Similarity=0.433  Sum_probs=35.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                      -.|++++|+|.|.+|.+++..++.+|+ +|++.+++.++.
T Consensus       149 l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~~~  187 (287)
T TIGR02853       149 IHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSADL  187 (287)
T ss_pred             CCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHHHH
Confidence            368999999999999999999999999 999999988764

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=94.89  E-value=0.041  Score=47.33  Aligned_cols=46  Identities=35%  Similarity=0.536  Sum_probs=37.6

Q ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEcCCchhhhcC
Q 026140          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIG  242 (243)
Q Consensus       196 ~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~-~vi~~~~~~~~~~~~  242 (243)
                      .+.+++|++||.+|.|. |..+.++++..+.. +|++++.+++.++.+
T Consensus        72 ~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A  118 (272)
T PRK11873         72 LAELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKA  118 (272)
T ss_pred             hccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHH
Confidence            35678999999999877 88888888887753 699999999877654

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=94.83  E-value=0.12  Score=42.75  Aligned_cols=41  Identities=34%  Similarity=0.449  Sum_probs=36.4

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      .-.|++++|+|.|.+|..+++.+...|+ +|++.+++.++.+
T Consensus        25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~   65 (200)
T cd01075          25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVA   65 (200)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHH
Confidence            3568899999999999999999999999 9999998887654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.80  E-value=0.14  Score=41.11  Aligned_cols=60  Identities=15%  Similarity=0.134  Sum_probs=43.8

Q ss_pred             hcccchhhHhHHHHHHHhcCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       179 aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~-vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                      ....+|....+...+........|++|+|+|+|. +|..++.+++..|+ +|+++.++.+++
T Consensus        21 ~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~~~l   81 (168)
T cd01080          21 PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKTKNL   81 (168)
T ss_pred             CCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCchhH
Confidence            3445555555555444444457899999999986 69999999999999 888888876544

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=94.78  E-value=0.094  Score=45.75  Aligned_cols=43  Identities=35%  Similarity=0.351  Sum_probs=38.2

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ...|++++|+|+|+.+.+++..++..|+.+++++.|+.+|.+.
T Consensus       123 ~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~  165 (283)
T COG0169         123 DVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEE  165 (283)
T ss_pred             ccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            3458999999999999999999999998899999999988654

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=94.64  E-value=0.11  Score=45.46  Aligned_cols=41  Identities=24%  Similarity=0.276  Sum_probs=35.8

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..+++++|+|+|+.+.+++..+...|+.+++++.|+.+|.+
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~  165 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQ  165 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHH
Confidence            45789999999999999998888899989999999887754

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=94.61  E-value=0.063  Score=46.76  Aligned_cols=41  Identities=20%  Similarity=0.217  Sum_probs=36.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..+++++|+|+|+.+.+++..+..+|+.+++++.|+.+|.+
T Consensus       123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~  163 (282)
T TIGR01809       123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLS  163 (282)
T ss_pred             cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Confidence            35789999999999999999999999989999999987754

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=94.50  E-value=0.15  Score=44.31  Aligned_cols=42  Identities=26%  Similarity=0.222  Sum_probs=36.7

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ...+++++|+|+|++|.+++..+...|+.+|+++.|+.++.+
T Consensus       120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~  161 (278)
T PRK00258        120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAE  161 (278)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence            356789999999999999999999999669999999987754

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=94.27  E-value=0.22  Score=46.51  Aligned_cols=40  Identities=30%  Similarity=0.444  Sum_probs=35.7

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                      .-.|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+.
T Consensus       251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a  290 (476)
T PTZ00075        251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICA  290 (476)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhH
Confidence            4689999999999999999999999999 899998776554

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=93.94  E-value=0.19  Score=43.87  Aligned_cols=37  Identities=22%  Similarity=0.319  Sum_probs=32.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ..+++++|+|+|++|.+++..+...|+.+|+++.|+.
T Consensus       124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            4578999999999999988888889996799999886

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=93.93  E-value=0.24  Score=40.32  Aligned_cols=40  Identities=30%  Similarity=0.302  Sum_probs=34.0

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..+.+++|+|+ |.+|..++..+...|+ +|+++.++.++.+
T Consensus        26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~   66 (194)
T cd01078          26 LKGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQ   66 (194)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHH
Confidence            46789999997 9999998888888898 8999998877643

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=93.70  E-value=0.15  Score=48.71  Aligned_cols=45  Identities=13%  Similarity=0.151  Sum_probs=38.7

Q ss_pred             HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          195 RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       195 ~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ...+.+.|++|||.|+ |.+|..+++.+...|+ +|++++|+.++++
T Consensus        73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~  118 (576)
T PLN03209         73 KELDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAE  118 (576)
T ss_pred             cccccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHH
Confidence            3456788999999998 9999999999989999 8999999887653

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=93.65  E-value=0.2  Score=34.66  Aligned_cols=33  Identities=27%  Similarity=0.404  Sum_probs=29.8

Q ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       204 ~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      +|+|+|+|.+|+-++..++.+|. +|+.+.+++.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR   33 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch
Confidence            58999999999999999999999 8999988764

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=93.46  E-value=0.22  Score=43.52  Aligned_cols=38  Identities=24%  Similarity=0.312  Sum_probs=32.0

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      ..+++++|+|+|+.+.+++..+...|+.+++++.|+++
T Consensus       122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~  159 (288)
T PRK12749        122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE  159 (288)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence            46789999999999988777777789989999999853

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=93.39  E-value=0.36  Score=40.68  Aligned_cols=37  Identities=32%  Similarity=0.354  Sum_probs=33.3

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCC--eEEEEcCC
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGAT--RIIGVDVI  235 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~--~vi~~~~~  235 (243)
                      .-.+.+++|+|+|+.|..++..+...|++  +++.++++
T Consensus        22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            35678999999999999999998899997  89999998

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK05866 short chain dehydrogenase; Provisional

Probab=93.30  E-value=0.16  Score=44.16  Aligned_cols=39  Identities=26%  Similarity=0.394  Sum_probs=33.8

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      .+++++|.|+ |++|...++.+...|+ +|++++++.++++
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~   78 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLD   78 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence            4678999998 9999999999888999 9999999876643

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=93.17  E-value=0.31  Score=38.89  Aligned_cols=41  Identities=27%  Similarity=0.421  Sum_probs=32.1

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       198 ~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                      ..-.|++++|.|-|.+|...++.++.+|+ +|++++.++-+.
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~a   59 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIRA   59 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHHH
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHHH
Confidence            35689999999999999999999999999 999999988664

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=93.16  E-value=0.33  Score=44.70  Aligned_cols=45  Identities=18%  Similarity=0.186  Sum_probs=38.1

Q ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       196 ~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ......+++++|+|+|.+|.+++..+...|+.+++++.|+.+|.+
T Consensus       175 ~~~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~  219 (414)
T PRK13940        175 QLDNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQ  219 (414)
T ss_pred             HhcCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            334467899999999999999999999999878999999877643

>PRK04148 hypothetical protein; Provisional

Probab=93.12  E-value=0.14  Score=39.56  Aligned_cols=43  Identities=21%  Similarity=0.302  Sum_probs=33.5

Q ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       197 ~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ....++.+++++|.| .|..++..+..+|. +|+++|.+++..+.
T Consensus        12 ~~~~~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~aV~~   54 (134)
T PRK04148         12 YEKGKNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEKAVEK   54 (134)
T ss_pred             cccccCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence            334567899999998 88755666668899 99999999987654

>PRK06196 oxidoreductase; Provisional

Probab=92.83  E-value=0.2  Score=43.86  Aligned_cols=39  Identities=21%  Similarity=0.290  Sum_probs=34.0

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      .+++++|.|+ |++|..++..+...|+ +|++++++.++.+
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~   64 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAR   64 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            5789999998 8999999998888999 8999999877653

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=92.71  E-value=0.63  Score=36.06  Aligned_cols=41  Identities=34%  Similarity=0.366  Sum_probs=34.1

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..+++++|+|.|.+|..+++.+...|..+|++++++.++.+
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~   57 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAK   57 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHH
Confidence            56789999999999999998888887448999998876654

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PLN02780 ketoreductase/ oxidoreductase

Probab=92.68  E-value=0.19  Score=44.47  Aligned_cols=39  Identities=23%  Similarity=0.229  Sum_probs=34.4

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      .|++++|.|+ +++|...+......|+ +|+++++++++++
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~   91 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLK   91 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHH
Confidence            5889999998 8999998888888899 8999999988764

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=92.62  E-value=0.45  Score=41.03  Aligned_cols=41  Identities=24%  Similarity=0.218  Sum_probs=34.9

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ...+++++|+|+|++|.+++..+...|+ +|++++++.++.+
T Consensus       114 ~~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~~~~~  154 (270)
T TIGR00507       114 LRPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTVSKAE  154 (270)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            3567899999999999999988888898 8999999877653

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B

Probab=91.97  E-value=0.17  Score=26.73  Aligned_cols=22  Identities=18%  Similarity=0.271  Sum_probs=15.6

Q ss_pred             eeeEEeccCCCCeEEEEEecCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPP   39 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~   39 (243)
                      |||+++.++++ .++++++.|.+
T Consensus         1 MkAv~y~G~~~-v~ve~VpdP~I   22 (23)
T PF13823_consen    1 MKAVVYHGPKD-VRVEEVPDPKI   22 (23)
T ss_dssp             -EEEEEEETTE-EEEEEE----S
T ss_pred             CcceEEeCCCc-eEEEECCCccc
Confidence            79999999998 99999988864

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=91.49  E-value=0.43  Score=40.80  Aligned_cols=38  Identities=26%  Similarity=0.360  Sum_probs=33.9

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      ..+-.+++|+|+|.++..++++|+.+|+ +|+++|..++
T Consensus        97 ~~p~~~L~IfGaG~va~~la~la~~lGf-~V~v~D~R~~  134 (246)
T TIGR02964        97 APPAPHVVLFGAGHVGRALVRALAPLPC-RVTWVDSREA  134 (246)
T ss_pred             cCCCCEEEEECCcHHHHHHHHHHhcCCC-EEEEEeCCcc
Confidence            4677899999999999999999999999 8999886654

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=91.39  E-value=0.24  Score=36.29  Aligned_cols=35  Identities=20%  Similarity=0.225  Sum_probs=30.9

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      .|++|||+|+|.+|..-++.+...|+ +|++++...
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~   40 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI   40 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch
Confidence            67899999999999999999999999 899998773

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=91.07  E-value=0.54  Score=42.84  Aligned_cols=56  Identities=20%  Similarity=0.306  Sum_probs=42.8

Q ss_pred             hhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          185 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       185 ~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      .-...+..+....++++|++||-+|.| .|..+..+++..|+ +|++++.+++.++.+
T Consensus       151 Aq~~k~~~l~~~l~l~~g~rVLDIGcG-~G~~a~~la~~~g~-~V~giDlS~~~l~~A  206 (383)
T PRK11705        151 AQEAKLDLICRKLQLKPGMRVLDIGCG-WGGLARYAAEHYGV-SVVGVTISAEQQKLA  206 (383)
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            333444556677888999999999874 56667788888898 999999998877654

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=90.84  E-value=0.44  Score=46.41  Aligned_cols=36  Identities=28%  Similarity=0.320  Sum_probs=32.1

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ..+++|+|+|+|+.|+.++..++.+|. +|+++++.+
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~  360 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHP  360 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            358899999999999999999999999 899998654

>PLN02928 oxidoreductase family protein

Probab=90.75  E-value=0.52  Score=42.35  Aligned_cols=35  Identities=31%  Similarity=0.571  Sum_probs=32.5

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      -.|+++.|+|.|.+|..+++.++.+|+ +|++.+++
T Consensus       157 l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~  191 (347)
T PLN02928        157 LFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRS  191 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCC
Confidence            458899999999999999999999999 99999876

>PLN00203 glutamyl-tRNA reductase

Probab=90.65  E-value=0.79  Score=43.47  Aligned_cols=41  Identities=20%  Similarity=0.372  Sum_probs=36.1

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..+.+|+|+|+|.+|.+++..+...|+.+|+++.++.++.+
T Consensus       264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~  304 (519)
T PLN00203        264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVA  304 (519)
T ss_pred             CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHH
Confidence            34789999999999999999999999878999999987754

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=90.45  E-value=0.59  Score=42.95  Aligned_cols=38  Identities=29%  Similarity=0.505  Sum_probs=33.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                      .+++++|.|+ |++|.+.+......|+ +|++++++++++
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r~~~~l  215 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGA-KVVALTSNSDKI  215 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHH
Confidence            5789999998 9999999988888999 899999877654

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=90.44  E-value=1.1  Score=38.99  Aligned_cols=41  Identities=24%  Similarity=0.393  Sum_probs=31.7

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ..++++||-+|.|. |.+++.+++ .|+.+|++++.++..++.
T Consensus       157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~  197 (288)
T TIGR00406       157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVES  197 (288)
T ss_pred             cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHH
Confidence            46789999999877 777766665 577699999999876543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=90.24  E-value=0.52  Score=44.81  Aligned_cols=40  Identities=33%  Similarity=0.458  Sum_probs=34.8

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..+++++|+|+|++|.+++..+...|+ +|+++.++.++.+
T Consensus       377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR~~e~a~  416 (529)
T PLN02520        377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANRTYERAK  416 (529)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHH
Confidence            346899999999999999999999999 9999998877654

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=89.89  E-value=0.64  Score=43.39  Aligned_cols=36  Identities=28%  Similarity=0.440  Sum_probs=31.7

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ..+++|+|+|+|+.|+.++..++..|. .|++++..+
T Consensus       139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~  174 (467)
T TIGR01318       139 PTGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHP  174 (467)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCC
Confidence            367899999999999999999999999 788887654

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=89.89  E-value=1.6  Score=30.57  Aligned_cols=35  Identities=29%  Similarity=0.428  Sum_probs=29.2

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  234 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~  234 (243)
                      ..+++++|+|.|.+|..+++.+...+..++.+.++
T Consensus        21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            56789999999999999999999886547777654

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=89.88  E-value=1.4  Score=38.46  Aligned_cols=56  Identities=16%  Similarity=0.171  Sum_probs=41.0

Q ss_pred             ccchhhHhHHHHHHHhcC-CCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          181 LLSCGVSTGVGAAWRTAN-VEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       181 ~~~~~~~ta~~~l~~~~~-~~~g~~VlI~GaG~-vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      +++|+....+.. +...+ --.|++++|+|.|. +|.-++.++...|+ +|+++.+....
T Consensus       137 ~~PcTp~ai~~l-l~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t~~  194 (286)
T PRK14175        137 FVPCTPLGIMEI-LKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRSKD  194 (286)
T ss_pred             CCCCcHHHHHHH-HHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCchh
Confidence            456555555553 34433 46899999999965 99999999999999 88888775543

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=89.55  E-value=0.63  Score=38.06  Aligned_cols=47  Identities=19%  Similarity=0.369  Sum_probs=38.2

Q ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCchhhhcC
Q 026140          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIG  242 (243)
Q Consensus       195 ~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g-~~~vi~~~~~~~~~~~~  242 (243)
                      ....+.++++|+-+|+|. |.+++.+++.++ ..+|++++.+++.++.+
T Consensus        34 ~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a   81 (198)
T PRK00377         34 SKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLT   81 (198)
T ss_pred             HHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHH
Confidence            456788999999999987 888888888764 23899999998877654

>PRK13243 glyoxylate reductase; Reviewed

Probab=89.43  E-value=0.8  Score=40.86  Aligned_cols=36  Identities=39%  Similarity=0.516  Sum_probs=32.8

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      .|++|.|+|.|.+|..+++.++.+|. +|++.++...
T Consensus       149 ~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~  184 (333)
T PRK13243        149 YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRK  184 (333)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCC
Confidence            57899999999999999999999999 8999997653

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=89.39  E-value=0.77  Score=40.56  Aligned_cols=36  Identities=33%  Similarity=0.412  Sum_probs=32.7

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      -.|++|.|+|-|.+|..+++.++.+|. +|++.++..
T Consensus       143 L~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~~~  178 (311)
T PRK08410        143 IKGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYSTSG  178 (311)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECCCc
Confidence            368999999999999999999999999 999998753

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=89.20  E-value=0.83  Score=40.68  Aligned_cols=33  Identities=48%  Similarity=0.725  Sum_probs=31.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  234 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~  234 (243)
                      .|+||-|+|.|.+|..+++.++.+|. +|++.++
T Consensus       141 ~gkTvGIiG~G~IG~~va~~l~afgm-~v~~~d~  173 (324)
T COG0111         141 AGKTVGIIGLGRIGRAVAKRLKAFGM-KVIGYDP  173 (324)
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCC-eEEEECC
Confidence            38899999999999999999999999 9999998

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=89.17  E-value=0.4  Score=41.58  Aligned_cols=49  Identities=20%  Similarity=0.282  Sum_probs=33.2

Q ss_pred             HHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       192 ~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      .+.+.+++++|++||-+|.| -|..+..+++..|+ +|++++.+++..+.+
T Consensus        53 ~~~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~~g~-~v~gitlS~~Q~~~a  101 (273)
T PF02353_consen   53 LLCEKLGLKPGDRVLDIGCG-WGGLAIYAAERYGC-HVTGITLSEEQAEYA  101 (273)
T ss_dssp             HHHTTTT--TT-EEEEES-T-TSHHHHHHHHHH---EEEEEES-HHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHcCc-EEEEEECCHHHHHHH
Confidence            35678899999999999875 45666678888899 999999998776643

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK06720 hypothetical protein; Provisional

Probab=88.91  E-value=1.1  Score=35.85  Aligned_cols=38  Identities=26%  Similarity=0.214  Sum_probs=32.1

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                      .+++++|.|+ +++|...+......|+ +|++++++.++.
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~   53 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESG   53 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHH
Confidence            5789999998 7999999888888899 899999876543

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=88.91  E-value=0.91  Score=37.44  Aligned_cols=36  Identities=31%  Similarity=0.312  Sum_probs=32.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ...+|+|+|.|++|..++..+..+|+.+++.+|...
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH   55 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            557899999999999999999999999999999763

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK08328 hypothetical protein; Provisional

Probab=88.80  E-value=0.88  Score=38.40  Aligned_cols=36  Identities=28%  Similarity=0.398  Sum_probs=31.8

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      .+.+|+|+|+|++|..++..+..+|.++++.+|...
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            457899999999999999999999999999998554

>PRK06484 short chain dehydrogenase; Validated

Probab=88.79  E-value=0.77  Score=43.06  Aligned_cols=40  Identities=33%  Similarity=0.326  Sum_probs=34.8

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..|+++||.|+ +++|...++.+...|+ +|++++++.++++
T Consensus       267 ~~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~  307 (520)
T PRK06484        267 ESPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAK  307 (520)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            46789999998 8999999999999999 9999999876654

>PRK06932 glycerate dehydrogenase; Provisional

Probab=88.71  E-value=0.85  Score=40.38  Aligned_cols=35  Identities=29%  Similarity=0.457  Sum_probs=31.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      .|++|.|+|-|.+|..+++.++.+|+ +|+..++..
T Consensus       146 ~gktvgIiG~G~IG~~va~~l~~fg~-~V~~~~~~~  180 (314)
T PRK06932        146 RGSTLGVFGKGCLGTEVGRLAQALGM-KVLYAEHKG  180 (314)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCc
Confidence            57899999999999999999999999 899988653

>PRK06487 glycerate dehydrogenase; Provisional

Probab=88.57  E-value=0.92  Score=40.20  Aligned_cols=35  Identities=31%  Similarity=0.364  Sum_probs=31.8

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      -.|++|.|+|-|.+|..+++.++.+|. +|++.++.
T Consensus       146 l~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~~  180 (317)
T PRK06487        146 LEGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQLP  180 (317)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCC
Confidence            357899999999999999999999999 99998865

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=88.51  E-value=1.2  Score=35.24  Aligned_cols=35  Identities=31%  Similarity=0.280  Sum_probs=29.9

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      -.|++|+|+|+|.+|.--++.+...|+ +|++++..
T Consensus        11 l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~   45 (157)
T PRK06719         11 LHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPE   45 (157)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCc
Confidence            468999999999999998988888999 88877543

>PRK06436 glycerate dehydrogenase; Provisional

Probab=88.50  E-value=1  Score=39.70  Aligned_cols=36  Identities=28%  Similarity=0.269  Sum_probs=32.6

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      -.|++|.|+|-|.+|..+++.++.+|+ +|++.+++.
T Consensus       120 L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~~  155 (303)
T PRK06436        120 LYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRSY  155 (303)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            468999999999999999999999999 999999763

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=88.46  E-value=2.2  Score=36.71  Aligned_cols=35  Identities=26%  Similarity=0.306  Sum_probs=31.0

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  234 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~  234 (243)
                      -.+|.+|+|.|-|.+|+.+++++..+|+ +|+++..
T Consensus        35 ~l~g~~vaIqGfGnVG~~~a~~L~e~Ga-kvvaVsD   69 (254)
T cd05313          35 TLKGKRVAISGSGNVAQYAAEKLLELGA-KVVTLSD   69 (254)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            3568999999999999999999999999 8886654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=88.36  E-value=0.99  Score=38.37  Aligned_cols=37  Identities=27%  Similarity=0.366  Sum_probs=32.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      .+.+|+|+|+|++|..++..+..+|.++++.+|...-
T Consensus        23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v   59 (240)
T TIGR02355        23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV   59 (240)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence            3478999999999999999999999999999886653

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=88.34  E-value=1.1  Score=39.95  Aligned_cols=37  Identities=38%  Similarity=0.390  Sum_probs=33.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      .|.+|.|+|.|.+|..++..++.+|. +|++.+++.++
T Consensus       145 ~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~~  181 (330)
T PRK12480        145 KNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPNK  181 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChhH
Confidence            67899999999999999999999999 99999987643

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=88.28  E-value=2.2  Score=39.09  Aligned_cols=58  Identities=21%  Similarity=0.229  Sum_probs=42.0

Q ss_pred             hhhcccchhhHhHHHHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          177 NRACLLSCGVSTGVGAAWRTANV-EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       177 ~~aa~~~~~~~ta~~~l~~~~~~-~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      .+|-...+.+.+-  .+....+. -.|.+|.|.|.|.+|+.+++.+..+|+ +||+++.+..
T Consensus       183 ~~aTg~Gv~~~~~--~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GA-kvva~sds~g  241 (411)
T COG0334         183 SEATGYGVFYAIR--EALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGA-KVVAVSDSKG  241 (411)
T ss_pred             CcccceehHHHHH--HHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCC-EEEEEEcCCC
Confidence            3444444333333  23344444 599999999999999999999999999 8998887654

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=88.09  E-value=1.1  Score=39.69  Aligned_cols=37  Identities=22%  Similarity=0.225  Sum_probs=33.0

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      ..|++|.|+|-|.+|..+++.++.+|+ +|++.++..+
T Consensus       134 l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~~  170 (312)
T PRK15469        134 REDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSRK  170 (312)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCC
Confidence            367899999999999999999999999 8999987654

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=88.05  E-value=0.89  Score=44.21  Aligned_cols=35  Identities=23%  Similarity=0.300  Sum_probs=31.8

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      .+++|+|+|+|+.|+.++..++..|. +|+++++.+
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~  343 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHP  343 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCC
Confidence            48999999999999999999999999 899988765

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=87.99  E-value=1.1  Score=32.78  Aligned_cols=48  Identities=23%  Similarity=0.310  Sum_probs=36.8

Q ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       194 ~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      .......++++|+-+|.|. |..+..+++..+..+|++++.++...+.+
T Consensus        12 ~~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a   59 (124)
T TIGR02469        12 LSKLRLRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLI   59 (124)
T ss_pred             HHHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHH
Confidence            3455677788999998866 88888888887545899999988766543

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=87.96  E-value=1.2  Score=29.99  Aligned_cols=29  Identities=31%  Similarity=0.299  Sum_probs=25.2

Q ss_pred             EECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          207 IFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       207 I~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      |+|+|..|+.++..++..|. +|.++.+++
T Consensus         1 IiGaG~sGl~aA~~L~~~g~-~v~v~E~~~   29 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGY-RVTVFEKND   29 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTS-EEEEEESSS
T ss_pred             CEeeCHHHHHHHHHHHHCCC-cEEEEecCc
Confidence            68999999999999998999 999998775

...

>PRK14031 glutamate dehydrogenase; Provisional

Probab=87.90  E-value=2.1  Score=39.76  Aligned_cols=35  Identities=17%  Similarity=0.247  Sum_probs=31.2

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  234 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~  234 (243)
                      -..|.+|+|.|.|.+|..+++++..+|+ +|+++.-
T Consensus       225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GA-kVVaVSD  259 (444)
T PRK14031        225 DLKGKVCLVSGSGNVAQYTAEKVLELGG-KVVTMSD  259 (444)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            3578999999999999999999999999 8888654

>PRK14982 acyl-ACP reductase; Provisional

Probab=87.90  E-value=1.1  Score=40.23  Aligned_cols=43  Identities=26%  Similarity=0.301  Sum_probs=34.8

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHH-cCCCeEEEEcCCchhhhc
Q 026140          199 VEVGSTVVIFGL-GSIGLAVAEGARL-CGATRIIGVDVISEKFEI  241 (243)
Q Consensus       199 ~~~g~~VlI~Ga-G~vG~~~v~la~~-~g~~~vi~~~~~~~~~~~  241 (243)
                      ...+++|+|.|+ |.+|..+++.+.. .|..+++.+.++.+++..
T Consensus       152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~  196 (340)
T PRK14982        152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQE  196 (340)
T ss_pred             CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHH
Confidence            357799999999 8999998888864 577789999998776643

>PRK12831 putative oxidoreductase; Provisional

Probab=87.84  E-value=1.1  Score=41.74  Aligned_cols=37  Identities=22%  Similarity=0.347  Sum_probs=32.1

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ...+++|+|+|+|+.|+.++..++..|. +|++++..+
T Consensus       137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~-~V~v~e~~~  173 (464)
T PRK12831        137 EKKGKKVAVIGSGPAGLTCAGDLAKMGY-DVTIFEALH  173 (464)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhCCC-eEEEEecCC
Confidence            3568899999999999999999999999 898887543

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=87.82  E-value=2.1  Score=35.82  Aligned_cols=36  Identities=28%  Similarity=0.408  Sum_probs=29.9

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEE-EcCC
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIG-VDVI  235 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~-~~~~  235 (243)
                      ...|.+|+|.|-|.+|+.+++++..+|+ ++++ .+++
T Consensus        20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~-~vV~vsD~~   56 (217)
T cd05211          20 SLEGLTVAVQGLGNVGWGLAKKLAEEGG-KVLAVSDPD   56 (217)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEEcCC
Confidence            4578999999999999999999999999 5555 4443

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=87.71  E-value=1.2  Score=36.67  Aligned_cols=35  Identities=37%  Similarity=0.441  Sum_probs=31.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      ...+|+|+|+|++|..+++.+...|.++++.+|.+
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            45789999999999999999999999889999977

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=87.55  E-value=2  Score=39.94  Aligned_cols=36  Identities=25%  Similarity=0.302  Sum_probs=31.0

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      -..|.+|+|.|.|.+|..+++.+..+|+ +|+++.-+
T Consensus       234 ~l~Gk~VaVqG~GnVg~~aa~~L~e~Ga-kVVavSD~  269 (454)
T PTZ00079        234 SLEGKTVVVSGSGNVAQYAVEKLLQLGA-KVLTMSDS  269 (454)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEcC
Confidence            3578999999999999999999999999 88855433

>PRK06701 short chain dehydrogenase; Provisional

Probab=87.44  E-value=1.3  Score=38.36  Aligned_cols=38  Identities=32%  Similarity=0.143  Sum_probs=32.2

Q ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       198 ~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ...+++++||.|+ |.+|..++..+...|+ +|++++++.
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~   80 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDE   80 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            3456789999998 8999999988888999 888888765

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=87.44  E-value=1.7  Score=40.81  Aligned_cols=40  Identities=23%  Similarity=0.238  Sum_probs=34.5

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..+++++|+|+|++|.+++..+...|+ ++++.+++.++.+
T Consensus       330 ~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R~~~~~~  369 (477)
T PRK09310        330 LNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNRTKAHAE  369 (477)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            357899999999999999999999999 8999888876654

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=87.37  E-value=2  Score=39.15  Aligned_cols=37  Identities=19%  Similarity=0.130  Sum_probs=33.1

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       198 ~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      ..-.|++|.|+|.|.+|..+++.++.+|. +|++.++.
T Consensus       112 ~~l~gktvGIIG~G~IG~~va~~l~a~G~-~V~~~Dp~  148 (381)
T PRK00257        112 VDLAERTYGVVGAGHVGGRLVRVLRGLGW-KVLVCDPP  148 (381)
T ss_pred             CCcCcCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCc
Confidence            34578999999999999999999999999 99999864

>PRK07985 oxidoreductase; Provisional

Probab=87.35  E-value=1.2  Score=38.62  Aligned_cols=35  Identities=20%  Similarity=0.062  Sum_probs=30.2

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      ..++++||.|+ |++|..+++.+...|+ +|+++.++
T Consensus        47 ~~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~   82 (294)
T PRK07985         47 LKDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLP   82 (294)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCC
Confidence            46789999998 8999999999999999 88887654

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=87.29  E-value=3.1  Score=36.35  Aligned_cols=39  Identities=15%  Similarity=0.141  Sum_probs=33.2

Q ss_pred             CCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          199 VEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       199 ~~~g~~VlI~GaG~-vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      .-.|++++|+|.|. +|..++.++...|+ +|+++.+....
T Consensus       156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~t~~  195 (283)
T PRK14192        156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSRTQN  195 (283)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCCchh
Confidence            46899999999976 99999999999999 88888775443

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=87.28  E-value=1.1  Score=43.79  Aligned_cols=37  Identities=27%  Similarity=0.301  Sum_probs=32.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      ..+++|+|+|+|+.|+.++..+..+|. +|++++..+.
T Consensus       191 ~~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~~~  227 (652)
T PRK12814        191 KSGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANEQ  227 (652)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence            457899999999999999999999999 8999886643

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=87.23  E-value=1.1  Score=41.73  Aligned_cols=36  Identities=25%  Similarity=0.432  Sum_probs=31.6

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      +.+++|+|+|+|+.|+.++..++..|. +|+++++.+
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~~  176 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAGH-KVTVFERAD  176 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence            457899999999999999999999999 898888654

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=87.12  E-value=1.4  Score=31.15  Aligned_cols=37  Identities=32%  Similarity=0.407  Sum_probs=30.5

Q ss_pred             EEEEECCCHHHHHHHHHHHHcC---CCeEEEE-cCCchhhhc
Q 026140          204 TVVIFGLGSIGLAVAEGARLCG---ATRIIGV-DVISEKFEI  241 (243)
Q Consensus       204 ~VlI~GaG~vG~~~v~la~~~g---~~~vi~~-~~~~~~~~~  241 (243)
                      +|.|+|+|.+|.+.+.-....|   . +|+.+ .+++++.+.
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~-~v~~~~~r~~~~~~~   41 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPH-EVIIVSSRSPEKAAE   41 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GG-EEEEEEESSHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCce-eEEeeccCcHHHHHH
Confidence            5778899999999999988888   6 77744 889887654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PLN02686 cinnamoyl-CoA reductase

Probab=87.09  E-value=1.4  Score=39.74  Aligned_cols=39  Identities=18%  Similarity=0.092  Sum_probs=32.4

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       199 ~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      ...+++|||.|+ |.+|..++..+...|+ +|+++.++.++
T Consensus        50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~-~V~~~~r~~~~   89 (367)
T PLN02686         50 DAEARLVCVTGGVSFLGLAIVDRLLRHGY-SVRIAVDTQED   89 (367)
T ss_pred             CCCCCEEEEECCchHHHHHHHHHHHHCCC-EEEEEeCCHHH
Confidence            356789999998 9999999999999999 88887666443

>PRK06128 oxidoreductase; Provisional

Probab=87.03  E-value=1.3  Score=38.50  Aligned_cols=35  Identities=29%  Similarity=0.161  Sum_probs=29.8

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      ..++++||.|+ |++|..++..+...|+ +|+.+.++
T Consensus        53 l~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~   88 (300)
T PRK06128         53 LQGRKALITGADSGIGRATAIAFAREGA-DIALNYLP   88 (300)
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCC
Confidence            35789999998 9999999999888999 88877654

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=87.02  E-value=1.5  Score=37.39  Aligned_cols=36  Identities=25%  Similarity=0.386  Sum_probs=31.9

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ...+|+|+|+|++|..++..+...|.++++.+|...
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   66 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT   66 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            457899999999999999999999999999988654

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=86.88  E-value=1.4  Score=40.07  Aligned_cols=40  Identities=23%  Similarity=0.231  Sum_probs=34.2

Q ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       198 ~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      +...+.+|||.|+ |.+|..++..+...|. +|++++++..+
T Consensus        56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~~~~   96 (390)
T PLN02657         56 KEPKDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAREKSG   96 (390)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEechhh
Confidence            3456789999998 9999999999888999 89999987643

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=86.65  E-value=1.4  Score=40.62  Aligned_cols=36  Identities=31%  Similarity=0.410  Sum_probs=31.3

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      .+++++||.|+ |++|..+++.+...|+ +|+++++..
T Consensus       208 ~~g~~vlItGasggIG~~la~~l~~~Ga-~vi~~~~~~  244 (450)
T PRK08261        208 LAGKVALVTGAARGIGAAIAEVLARDGA-HVVCLDVPA  244 (450)
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            35789999998 9999999999999999 899888743

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=86.55  E-value=12  Score=33.25  Aligned_cols=80  Identities=11%  Similarity=0.062  Sum_probs=48.2

Q ss_pred             eeeeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHHhcC---CCCCCEEEEECC-CHHHHHHHHHHH-HcCCCeE
Q 026140          155 SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTAN---VEVGSTVVIFGL-GSIGLAVAEGAR-LCGATRI  229 (243)
Q Consensus       155 ~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~---~~~g~~VlI~Ga-G~vG~~~v~la~-~~g~~~v  229 (243)
                      .|-+|.++..+..+.  .+....++++-+ -+.|.|. +.+...   .-..+.|+|..| +-+++..+..++ ..+..++
T Consensus        90 ~YN~Y~r~~~d~~y~--~~~e~~~~LlrP-Lf~Tsfl-l~d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~  165 (314)
T PF11017_consen   90 IYNQYLRVSADPAYD--PEREDWQMLLRP-LFITSFL-LDDFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKV  165 (314)
T ss_pred             hhhceeecCCCcccC--cchhHHHHHHHH-HHHHHHH-HHHHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceE
Confidence            566777776544331  122223344444 5667765 333332   233467777788 788888888887 5555589


Q ss_pred             EEEcCCchh
Q 026140          230 IGVDVISEK  238 (243)
Q Consensus       230 i~~~~~~~~  238 (243)
                      |.+.+..++
T Consensus       166 vglTS~~N~  174 (314)
T PF11017_consen  166 VGLTSARNV  174 (314)
T ss_pred             EEEecCcch
Confidence            999977655

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=86.36  E-value=0.98  Score=32.71  Aligned_cols=40  Identities=40%  Similarity=0.610  Sum_probs=30.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCCchhhhcC
Q 026140          201 VGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~-~~g~~~vi~~~~~~~~~~~~  242 (243)
                      |+++||-+|.|. |..+..+++ ..++ +|++++.+++-++.+
T Consensus         1 p~~~vLDlGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a   41 (112)
T PF12847_consen    1 PGGRVLDLGCGT-GRLSIALARLFPGA-RVVGVDISPEMLEIA   41 (112)
T ss_dssp             TTCEEEEETTTT-SHHHHHHHHHHTTS-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEEcCcC-CHHHHHHHhcCCCC-EEEEEeCCHHHHHHH
Confidence            678999998643 666667777 4677 899999998776654

...

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=86.28  E-value=1.5  Score=39.24  Aligned_cols=36  Identities=28%  Similarity=0.294  Sum_probs=32.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ...+|+|+|+|++|..++..+..+|.++++.+|...
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            457899999999999999999999998999998764

>PRK07574 formate dehydrogenase; Provisional

Probab=86.27  E-value=1.4  Score=40.12  Aligned_cols=35  Identities=34%  Similarity=0.369  Sum_probs=32.4

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      .|++|.|+|.|.+|..+++.++.+|. +|++.++..
T Consensus       191 ~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~  225 (385)
T PRK07574        191 EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHR  225 (385)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCC
Confidence            57899999999999999999999999 999999875

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=86.24  E-value=1.4  Score=43.12  Aligned_cols=38  Identities=24%  Similarity=0.242  Sum_probs=33.3

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                      .++++||.|+ |++|..+++.+...|+ +|++++++.++.
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~~~~~  451 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNLEAA  451 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCCHHHH
Confidence            4789999998 9999999998888999 999999887654

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=86.17  E-value=1.6  Score=36.36  Aligned_cols=36  Identities=25%  Similarity=0.237  Sum_probs=31.9

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ...+|+|+|+|++|..+++.+..+|..+++.+|...
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~   62 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV   62 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            456899999999999999999999998899998763

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=86.06  E-value=1.6  Score=40.08  Aligned_cols=36  Identities=31%  Similarity=0.354  Sum_probs=32.7

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      -.|+++.|+|-|.+|..+++.++.+|. +|++.++..
T Consensus       149 L~gktvGIiG~G~IG~~vA~~~~~fGm-~V~~~d~~~  184 (409)
T PRK11790        149 VRGKTLGIVGYGHIGTQLSVLAESLGM-RVYFYDIED  184 (409)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCc
Confidence            367899999999999999999999999 999999754

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=86.04  E-value=1.7  Score=36.44  Aligned_cols=36  Identities=25%  Similarity=0.281  Sum_probs=31.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ...+|+|+|+|++|..++..+..+|.++++.+|...
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            357899999999999999999999999999987654

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=85.95  E-value=1.2  Score=39.50  Aligned_cols=42  Identities=24%  Similarity=0.234  Sum_probs=35.8

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       199 ~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ...|.+++|.|+ +++|...+.-....|+ +||...|+.++.+.
T Consensus        32 ~~~~~~~vVTGansGIG~eta~~La~~Ga-~Vv~~~R~~~~~~~   74 (314)
T KOG1208|consen   32 DLSGKVALVTGATSGIGFETARELALRGA-HVVLACRNEERGEE   74 (314)
T ss_pred             cCCCcEEEEECCCCchHHHHHHHHHhCCC-EEEEEeCCHHHHHH
Confidence            345688899999 9999999999999998 99999999876554

>PRK14030 glutamate dehydrogenase; Provisional

Probab=85.78  E-value=3.2  Score=38.62  Aligned_cols=33  Identities=30%  Similarity=0.492  Sum_probs=30.0

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD  233 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~  233 (243)
                      ..|.+|+|.|.|.+|+.+++++..+|+ +|+++.
T Consensus       226 l~g~~vaIQGfGnVG~~aA~~L~e~Ga-kvVavS  258 (445)
T PRK14030        226 IKGKTVAISGFGNVAWGAATKATELGA-KVVTIS  258 (445)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEE
Confidence            568999999999999999999999999 888854

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=85.65  E-value=1.7  Score=38.92  Aligned_cols=36  Identities=31%  Similarity=0.306  Sum_probs=32.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ...+|+|+|+|++|..++..+...|.++++.+|...
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            457899999999999999999999999999999764

>PRK07201 short chain dehydrogenase; Provisional

Probab=85.63  E-value=1.4  Score=42.52  Aligned_cols=39  Identities=33%  Similarity=0.386  Sum_probs=33.7

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      .+++++|.|+ |++|..++..+...|+ +|+++++++++++
T Consensus       370 ~~k~vlItGas~giG~~la~~l~~~G~-~V~~~~r~~~~~~  409 (657)
T PRK07201        370 VGKVVLITGASSGIGRATAIKVAEAGA-TVFLVARNGEALD  409 (657)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence            3678999998 8999999988888999 9999999887643

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=85.56  E-value=2.9  Score=38.10  Aligned_cols=36  Identities=22%  Similarity=0.254  Sum_probs=32.7

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      .-.|++|.|+|.|.+|..+++.++.+|. +|++.++.
T Consensus       113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~-~V~~~dp~  148 (378)
T PRK15438        113 SLHDRTVGIVGVGNVGRRLQARLEALGI-KTLLCDPP  148 (378)
T ss_pred             CcCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCc
Confidence            3578999999999999999999999999 99999854

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=85.47  E-value=3.7  Score=36.77  Aligned_cols=41  Identities=17%  Similarity=0.088  Sum_probs=35.3

Q ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       197 ~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      .+...+++|||+|+|-+|.+++..+...|+.+++++.|+..
T Consensus       169 ~~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~  209 (338)
T PRK00676        169 RQKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQL  209 (338)
T ss_pred             hCCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence            34467899999999999999999999999878888888753

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=85.45  E-value=0.87  Score=42.00  Aligned_cols=42  Identities=14%  Similarity=0.105  Sum_probs=34.3

Q ss_pred             HhcCCCCCCEEE----EECC-CHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          195 RTANVEVGSTVV----IFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       195 ~~~~~~~g~~Vl----I~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      ...+.++|+++|    |+|+ |++|.+++|+++..|+ +|+++.+.+.
T Consensus        27 ~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~-~v~~~~~~~~   73 (450)
T PRK08261         27 PLRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGY-DVVANNDGGL   73 (450)
T ss_pred             cccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCC-eeeecCcccc
Confidence            345677888877    7766 9999999999999999 8988776554

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=85.43  E-value=1.3  Score=45.06  Aligned_cols=36  Identities=19%  Similarity=0.234  Sum_probs=32.1

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ..|++|+|+|+|+.|+.++..+...|. +|+++++.+
T Consensus       304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~  339 (944)
T PRK12779        304 AVKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFH  339 (944)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCC
Confidence            358999999999999999999999999 899998654

>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below)

Probab=85.40  E-value=1.2  Score=33.16  Aligned_cols=36  Identities=19%  Similarity=0.321  Sum_probs=30.4

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       203 ~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                      ++|||.|.|.++.-+++-++.+|+ +++++.+++++.
T Consensus         3 kkvLIanrGeia~r~~ra~r~~Gi-~tv~v~s~~d~~   38 (110)
T PF00289_consen    3 KKVLIANRGEIAVRIIRALRELGI-ETVAVNSNPDTV   38 (110)
T ss_dssp             SEEEESS-HHHHHHHHHHHHHTTS-EEEEEEEGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCC-cceeccCchhcc
Confidence            689999999999999999999999 888887777654

CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....

>PLN03139 formate dehydrogenase; Provisional

Probab=85.32  E-value=1.6  Score=39.90  Aligned_cols=36  Identities=22%  Similarity=0.272  Sum_probs=32.7

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      -.|++|.|+|.|.+|..+++.++.+|. +|++.+++.
T Consensus       197 L~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~  232 (386)
T PLN03139        197 LEGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLK  232 (386)
T ss_pred             CCCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            368899999999999999999999999 899998764

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=85.26  E-value=1.5  Score=37.55  Aligned_cols=33  Identities=24%  Similarity=0.249  Sum_probs=28.3

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       203 ~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      --|+|+|+|+.|++++..+...|. +|++++++.
T Consensus        26 ~DVvIVGgGpAGl~AA~~la~~G~-~V~liEk~~   58 (257)
T PRK04176         26 VDVAIVGAGPSGLTAAYYLAKAGL-KVAVFERKL   58 (257)
T ss_pred             CCEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Confidence            358899999999998888888999 899998664

>PRK08223 hypothetical protein; Validated

Probab=85.07  E-value=1.7  Score=37.98  Aligned_cols=36  Identities=25%  Similarity=0.173  Sum_probs=32.1

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ...+|+|+|+|++|..++..+..+|.+++..+|...
T Consensus        26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~   61 (287)
T PRK08223         26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV   61 (287)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            457899999999999999999999999999988654

>PRK13984 putative oxidoreductase; Provisional

Probab=84.94  E-value=1.8  Score=41.63  Aligned_cols=37  Identities=24%  Similarity=0.258  Sum_probs=32.6

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      .+.+++|+|+|+|+.|+.++..++..|. +|+++++.+
T Consensus       280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~  316 (604)
T PRK13984        280 EKKNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLS  316 (604)
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            4678899999999999999999999999 888887654

>PRK05855 short chain dehydrogenase; Validated

Probab=84.93  E-value=1.7  Score=40.95  Aligned_cols=39  Identities=28%  Similarity=0.334  Sum_probs=33.3

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      .+.++||.|+ |++|..+++-+...|+ +|++++++.++++
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~  353 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGA-EVVASDIDEAAAE  353 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            4578999998 9999999988888999 8999999876654

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=84.85  E-value=3.5  Score=37.94  Aligned_cols=47  Identities=23%  Similarity=0.228  Sum_probs=39.5

Q ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       194 ~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ....+--.++++||+|+|-+|.+++......|..+|++..|+-+|..
T Consensus       170 ~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~  216 (414)
T COG0373         170 KRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAE  216 (414)
T ss_pred             HHHhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHH
Confidence            34444458899999999999999999999999889999999887754

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=84.82  E-value=1.8  Score=40.17  Aligned_cols=36  Identities=22%  Similarity=0.371  Sum_probs=31.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ..+++|+|+|+|+.|+.++..++..|. +|++++..+
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~~  166 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKAGH-SVTVFEALH  166 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            457899999999999999999999999 899888653

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR00292 thiazole biosynthesis enzyme

Probab=84.79  E-value=1.6  Score=37.38  Aligned_cols=32  Identities=25%  Similarity=0.292  Sum_probs=28.3

Q ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       204 ~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      .|+|+|+|+.|++++..+...|. +|+++.++.
T Consensus        23 DVvIVGgGpAGL~aA~~la~~G~-~V~vlEk~~   54 (254)
T TIGR00292        23 DVIIVGAGPSGLTAAYYLAKNGL-KVCVLERSL   54 (254)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            48999999999999998888999 899998764

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=84.59  E-value=1.9  Score=40.44  Aligned_cols=36  Identities=25%  Similarity=0.396  Sum_probs=31.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ..+++|+|+|+|+.|+.++..++..|. +|++++..+
T Consensus       141 ~~~~~V~IIGaG~aGl~aA~~L~~~g~-~V~v~e~~~  176 (485)
T TIGR01317       141 RTGKKVAVVGSGPAGLAAADQLNRAGH-TVTVFERED  176 (485)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEecCC
Confidence            456899999999999999999999999 888887554

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=84.53  E-value=1.9  Score=38.77  Aligned_cols=36  Identities=25%  Similarity=0.228  Sum_probs=31.4

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ..+++|||.|+ |.+|..++..+...|. +|+++++..
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r~~   55 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKAEGH-YIIASDWKK   55 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEecc
Confidence            36689999998 9999999999999998 899998753

>PLN02306 hydroxypyruvate reductase

Probab=84.41  E-value=2  Score=39.15  Aligned_cols=35  Identities=31%  Similarity=0.297  Sum_probs=31.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~-~~g~~~vi~~~~~~  236 (243)
                      .|++|.|+|.|.+|..+++.++ .+|. +|++.++..
T Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~~fGm-~V~~~d~~~  199 (386)
T PLN02306        164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (386)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCC-EEEEECCCC
Confidence            5789999999999999999985 8999 999998764

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=84.33  E-value=1.8  Score=41.95  Aligned_cols=36  Identities=28%  Similarity=0.271  Sum_probs=32.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ...+|||+|+|++|..+++.+..+|.++++.+|...
T Consensus       337 ~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~  372 (664)
T TIGR01381       337 SQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGK  372 (664)
T ss_pred             hcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence            467899999999999999999999999999998653

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=84.32  E-value=1.9  Score=39.92  Aligned_cols=36  Identities=22%  Similarity=0.340  Sum_probs=31.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ..+++|+|+|+|+.|+.++..+...|. +|+++++.+
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~-~V~lie~~~  173 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEARD  173 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCC
Confidence            457899999999999999998888998 899988664

>PLN02477 glutamate dehydrogenase

Probab=84.29  E-value=4  Score=37.55  Aligned_cols=33  Identities=33%  Similarity=0.476  Sum_probs=29.7

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD  233 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~  233 (243)
                      ..|.+|+|.|.|.+|..+++++...|+ +|+++.
T Consensus       204 l~g~~VaIqGfGnVG~~~A~~L~e~Ga-kVVaVs  236 (410)
T PLN02477        204 IAGQTFVIQGFGNVGSWAAQLIHEKGG-KIVAVS  236 (410)
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE
Confidence            468999999999999999999999999 888554

>PRK09414 glutamate dehydrogenase; Provisional

Probab=84.25  E-value=4.2  Score=37.82  Aligned_cols=34  Identities=26%  Similarity=0.422  Sum_probs=30.7

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD  233 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~  233 (243)
                      ...|.+|+|.|-|.+|+.+++++..+|+ +|+++.
T Consensus       229 ~l~g~rVaIqGfGnVG~~~A~~L~~~Ga-kVVavs  262 (445)
T PRK09414        229 SFEGKRVVVSGSGNVAIYAIEKAQQLGA-KVVTCS  262 (445)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEE
Confidence            3578999999999999999999999999 888883

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=84.17  E-value=1.8  Score=44.34  Aligned_cols=36  Identities=22%  Similarity=0.216  Sum_probs=31.7

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ..+++|+|+|+|+.|+.++..++..|. +|++++..+
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~~  572 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREE  572 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEeccc
Confidence            457899999999999999999999999 899888654

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=84.04  E-value=2.3  Score=36.88  Aligned_cols=37  Identities=22%  Similarity=0.318  Sum_probs=32.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      -.+.+|+|+|.|++|..++..+...|..+++.+|...
T Consensus        28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            3567899999999999999999999998999998654

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=84.03  E-value=6.3  Score=30.62  Aligned_cols=54  Identities=17%  Similarity=0.130  Sum_probs=39.3

Q ss_pred             ccchhhHhHHHHHHHhcC-CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          181 LLSCGVSTGVGAAWRTAN-VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       181 ~~~~~~~ta~~~l~~~~~-~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      +++|.....+..+ +..+ --.|++|+|+|. ..+|.-++.++...|+ +|+.+.+..
T Consensus         7 ~~p~t~~a~~~ll-~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~ga-tV~~~~~~t   62 (140)
T cd05212           7 FVSPVAKAVKELL-NKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGA-TVYSCDWKT   62 (140)
T ss_pred             ccccHHHHHHHHH-HHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeCCCC
Confidence            4554544444433 3333 457999999998 7999999999999999 888888544

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=83.78  E-value=1.2  Score=39.35  Aligned_cols=40  Identities=25%  Similarity=0.273  Sum_probs=35.6

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       202 g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ..+|.|+|.|-+|.-++.+|.-+|+ +|..++.+.+|+..+
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~l  207 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQL  207 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhh
Confidence            3567888999999999999999999 999999999988654

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=83.78  E-value=1.4  Score=38.70  Aligned_cols=41  Identities=32%  Similarity=0.383  Sum_probs=34.0

Q ss_pred             CCCCEEEEECC-CHHHHH-HHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          200 EVGSTVVIFGL-GSIGLA-VAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~-~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +.|+..+|.|+ .++|.+ +-++|+ .|+ +|+.+.|+.+|++..
T Consensus        47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~-nvvLIsRt~~KL~~v   89 (312)
T KOG1014|consen   47 KLGSWAVVTGATDGIGKAYARELAK-RGF-NVVLISRTQEKLEAV   89 (312)
T ss_pred             hcCCEEEEECCCCcchHHHHHHHHH-cCC-EEEEEeCCHHHHHHH
Confidence            45788899999 699977 556666 999 899999999998754

>PRK14967 putative methyltransferase; Provisional

Probab=83.73  E-value=3.5  Score=34.26  Aligned_cols=45  Identities=22%  Similarity=0.289  Sum_probs=34.9

Q ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       195 ~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ....++++++||-.|.|. |..++.+++. ++.++++++.++..++.
T Consensus        30 ~~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~   74 (223)
T PRK14967         30 AAEGLGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRS   74 (223)
T ss_pred             HhcccCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHH
Confidence            345578889999999876 8888887775 55589999999876653

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=83.69  E-value=2  Score=43.72  Aligned_cols=35  Identities=17%  Similarity=0.362  Sum_probs=31.9

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      ..|++|+|+|+|+.|+.++..+...|. +|++++..
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh-~Vtv~E~~  415 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGH-NVTAIDGL  415 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCC-eEEEEccc
Confidence            468999999999999999999999999 89999864

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=83.69  E-value=1.6  Score=41.43  Aligned_cols=34  Identities=29%  Similarity=0.413  Sum_probs=29.7

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       203 ~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      -.|+|+|+|+.|++++..+...|. +|+++++.+.
T Consensus        24 ~dVlIVGaGpaGl~lA~~L~~~G~-~v~viE~~~~   57 (547)
T PRK08132         24 HPVVVVGAGPVGLALAIDLAQQGV-PVVLLDDDDT   57 (547)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-cEEEEeCCCC
Confidence            469999999999999888888999 8999987753

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=83.62  E-value=2.2  Score=40.59  Aligned_cols=43  Identities=26%  Similarity=0.248  Sum_probs=34.5

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       199 ~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      .-.|++|||.|+ |++|...+.=....+..+++.+++++.++..
T Consensus       247 ~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~  290 (588)
T COG1086         247 MLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYL  290 (588)
T ss_pred             HcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHH
Confidence            357899999998 8999876655555688899999999887643

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=83.57  E-value=2.2  Score=38.65  Aligned_cols=36  Identities=19%  Similarity=0.319  Sum_probs=32.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ...+|+|+|+|++|..++..+...|..+++.+|...
T Consensus        40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~   75 (370)
T PRK05600         40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT   75 (370)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            457899999999999999999999999999998764

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=83.42  E-value=2  Score=44.00  Aligned_cols=35  Identities=17%  Similarity=0.219  Sum_probs=30.9

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      .+++|+|+|+|+.|+.++..++.+|. +|++++..+
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~-~VTV~Ek~~  570 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKE  570 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeccc
Confidence            46789999999999999999999999 899988653

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=83.34  E-value=2.4  Score=38.22  Aligned_cols=36  Identities=19%  Similarity=0.216  Sum_probs=32.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ...+|+|+|+|++|..++..+..+|.++++.+|...
T Consensus        27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            457899999999999999999999999999998764

>PLN02572 UDP-sulfoquinovose synthase

Probab=83.19  E-value=2.2  Score=39.61  Aligned_cols=35  Identities=26%  Similarity=0.200  Sum_probs=30.1

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 026140          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  234 (243)
Q Consensus       199 ~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~  234 (243)
                      ..++++|||.|+ |.+|..+++.+...|. +|+++++
T Consensus        44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~   79 (442)
T PLN02572         44 SSKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDN   79 (442)
T ss_pred             cccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEec
Confidence            345688999998 9999999999999999 8998864

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=83.15  E-value=3.2  Score=35.39  Aligned_cols=33  Identities=30%  Similarity=0.440  Sum_probs=29.9

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD  233 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~  233 (243)
                      -.|.+++|.|.|.+|..+++++..+|+ +++++.
T Consensus        30 l~g~~v~IqGfG~VG~~~a~~l~~~Ga-~vv~vs   62 (244)
T PF00208_consen   30 LEGKRVAIQGFGNVGSHAARFLAELGA-KVVAVS   62 (244)
T ss_dssp             STTCEEEEEESSHHHHHHHHHHHHTTE-EEEEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEe
Confidence            478999999999999999999999999 888873

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=82.65  E-value=2.6  Score=36.90  Aligned_cols=38  Identities=24%  Similarity=0.268  Sum_probs=31.7

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       199 ~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      .-.|+.|||.|+ +++|.+.++=...+|+ ++++.|.+.+
T Consensus        35 ~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~   73 (300)
T KOG1201|consen   35 SVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQ   73 (300)
T ss_pred             hccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEecccc
Confidence            347899999998 6999987777778899 8888888764

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=82.65  E-value=2.1  Score=41.93  Aligned_cols=37  Identities=24%  Similarity=0.183  Sum_probs=32.8

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      .++..+|+|+|+|..|++++..++..|+ +|.++.+.+
T Consensus        78 ~~~~~~VlIVGgGIaGLalAlaL~r~Gi-~V~V~Er~~  114 (668)
T PLN02927         78 KKKKSRVLVAGGGIGGLVFALAAKKKGF-DVLVFEKDL  114 (668)
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHhcCC-eEEEEeccc
Confidence            3566789999999999999999999999 899999865

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=82.60  E-value=4.1  Score=35.57  Aligned_cols=51  Identities=20%  Similarity=0.292  Sum_probs=40.8

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       190 ~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +..+....++++|++||=+|.|- |.+++-+|+..|+ +|++++-+++..+.+
T Consensus        61 ~~~~~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v-~V~GvTlS~~Q~~~~  111 (283)
T COG2230          61 LDLILEKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGV-TVVGVTLSEEQLAYA  111 (283)
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCC-EEEEeeCCHHHHHHH
Confidence            44567889999999999998643 5566778888899 999999999877654

>PLN02206 UDP-glucuronate decarboxylase

Probab=82.40  E-value=2.7  Score=39.06  Aligned_cols=35  Identities=29%  Similarity=0.359  Sum_probs=30.3

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      .++.+|||.|+ |.+|..++..+...|. +|+++++.
T Consensus       117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~~  152 (442)
T PLN02206        117 RKGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDNF  152 (442)
T ss_pred             cCCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeCC
Confidence            35689999998 9999999999999999 89988753

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=82.34  E-value=2.4  Score=38.43  Aligned_cols=35  Identities=23%  Similarity=0.246  Sum_probs=32.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      ...+|+|+|+|++|..++..+...|.++++.++..
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            56789999999999999999999999999999976

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=82.29  E-value=2  Score=39.91  Aligned_cols=34  Identities=21%  Similarity=0.229  Sum_probs=29.4

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       203 ~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      -.|+|+|+|+.|++++..+...|. +|.++++...
T Consensus        40 ~DViIVGaGPAG~~aA~~LA~~G~-~VlllEr~~~   73 (450)
T PLN00093         40 LRVAVIGGGPAGACAAETLAKGGI-ETFLIERKLD   73 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Confidence            358999999999999988888999 8999987653

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=82.12  E-value=2.8  Score=37.25  Aligned_cols=35  Identities=29%  Similarity=0.293  Sum_probs=31.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~-~~g~~~vi~~~~~~  236 (243)
                      .|+++.|+|-|.+|..+++.++ .+|. +|+..++..
T Consensus       144 ~gktvGIiG~G~IG~~va~~l~~~fgm-~V~~~~~~~  179 (323)
T PRK15409        144 HHKTLGIVGMGRIGMALAQRAHFGFNM-PILYNARRH  179 (323)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHhcCCC-EEEEECCCC
Confidence            6799999999999999999998 8999 899888653

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=82.09  E-value=2.6  Score=41.77  Aligned_cols=35  Identities=23%  Similarity=0.387  Sum_probs=31.2

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      ..+++|+|+|+|+.|+.++..+...|. +|++++..
T Consensus       429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~-~V~v~e~~  463 (752)
T PRK12778        429 KNGKKVAVIGSGPAGLSFAGDLAKRGY-DVTVFEAL  463 (752)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence            357899999999999999999999999 89998864

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=82.06  E-value=6.7  Score=33.01  Aligned_cols=35  Identities=29%  Similarity=0.430  Sum_probs=30.3

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      ..+.+|+|.|.|.+|..++.++...|+ +|+.+..+
T Consensus        29 l~~~~v~I~G~G~VG~~~a~~L~~~g~-~vv~v~D~   63 (227)
T cd01076          29 LAGARVAIQGFGNVGSHAARFLHEAGA-KVVAVSDS   63 (227)
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            468999999999999999999999999 88855443

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PTZ00188 adrenodoxin reductase; Provisional

Probab=81.91  E-value=3.3  Score=39.11  Aligned_cols=37  Identities=14%  Similarity=0.072  Sum_probs=30.0

Q ss_pred             CCCCEEEEECCCHHHHHHHH-HHHHcCCCeEEEEcCCch
Q 026140          200 EVGSTVVIFGLGSIGLAVAE-GARLCGATRIIGVDVISE  237 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~-la~~~g~~~vi~~~~~~~  237 (243)
                      ..+.+|+|+|+|+.|+.++. +++..|. +|.++.+.+.
T Consensus        37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p~   74 (506)
T PTZ00188         37 AKPFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLPN   74 (506)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCCC
Confidence            35679999999999999877 6667788 8888887653

>PRK08605 D-lactate dehydrogenase; Validated

Probab=81.90  E-value=2.9  Score=37.26  Aligned_cols=36  Identities=31%  Similarity=0.454  Sum_probs=31.1

Q ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCch
Q 026140          201 VGSTVVIFGLGSIGLAVAEGA-RLCGATRIIGVDVISE  237 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la-~~~g~~~vi~~~~~~~  237 (243)
                      .|.+|.|+|.|.+|..+++.+ +.+|. +|++.+++..
T Consensus       145 ~g~~VgIIG~G~IG~~vA~~L~~~~g~-~V~~~d~~~~  181 (332)
T PRK08605        145 KDLKVAVIGTGRIGLAVAKIFAKGYGS-DVVAYDPFPN  181 (332)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCC-EEEEECCCcc
Confidence            578999999999999988887 67899 8999987654

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=81.72  E-value=5.5  Score=36.63  Aligned_cols=51  Identities=25%  Similarity=0.250  Sum_probs=39.1

Q ss_pred             hhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC--eEEEEcCC
Q 026140          185 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT--RIIGVDVI  235 (243)
Q Consensus       185 ~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~--~vi~~~~~  235 (243)
                      .++.-++++......-...+|++.|+|.-|.+.+.+.+.+|..  +++++|+.
T Consensus       182 ~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~  234 (432)
T COG0281         182 TLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRK  234 (432)
T ss_pred             HHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecC
Confidence            3344455554445555667899999999999999999999987  89999875

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=81.66  E-value=1.9  Score=42.00  Aligned_cols=35  Identities=23%  Similarity=0.232  Sum_probs=28.7

Q ss_pred             CEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCCchh
Q 026140          203 STVVIFGLGSIGLAVAEGARL-CGATRIIGVDVISEK  238 (243)
Q Consensus       203 ~~VlI~GaG~vG~~~v~la~~-~g~~~vi~~~~~~~~  238 (243)
                      -.|+|+|+|+.|++++..+.. .|. +|.++++.+..
T Consensus        33 ~dVlIVGAGPaGL~lA~~Lar~~Gi-~v~IiE~~~~~   68 (634)
T PRK08294         33 VDVLIVGCGPAGLTLAAQLSAFPDI-TTRIVERKPGR   68 (634)
T ss_pred             CCEEEECCCHHHHHHHHHHhcCCCC-cEEEEEcCCCC
Confidence            369999999999987777777 499 89999977653

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=81.64  E-value=2.9  Score=34.39  Aligned_cols=36  Identities=19%  Similarity=0.362  Sum_probs=31.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ...+|+|+|+|++|.-++..+..+|.+++..+|...
T Consensus        20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~   55 (197)
T cd01492          20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT   55 (197)
T ss_pred             HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            457899999999999999999999999999988653

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK07340 ornithine cyclodeaminase; Validated

Probab=81.58  E-value=8  Score=33.99  Aligned_cols=42  Identities=12%  Similarity=0.001  Sum_probs=35.1

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCCchhhh
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFE  240 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~-~~g~~~vi~~~~~~~~~~  240 (243)
                      -....+++|+|+|..|...+..+. ..+.++|.+.+++.+|.+
T Consensus       122 ~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~  164 (304)
T PRK07340        122 PAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAA  164 (304)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHH
Confidence            356789999999999999888886 478888999999987754

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=81.37  E-value=3.1  Score=37.05  Aligned_cols=36  Identities=36%  Similarity=0.450  Sum_probs=33.3

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      -.|+++.|+|.|.+|.++++.++.+|. +|+..+++.
T Consensus       144 l~gktvGIiG~GrIG~avA~r~~~Fgm-~v~y~~~~~  179 (324)
T COG1052         144 LRGKTLGIIGLGRIGQAVARRLKGFGM-KVLYYDRSP  179 (324)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCC
Confidence            458999999999999999999999999 999999886

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=81.30  E-value=3.4  Score=36.80  Aligned_cols=48  Identities=23%  Similarity=0.303  Sum_probs=37.4

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCchhhhc
Q 026140          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEI  241 (243)
Q Consensus       193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~-~~vi~~~~~~~~~~~  241 (243)
                      +.....++++++||.+|+| .|..++.+++..+. ..|++++.+++.++.
T Consensus        72 ll~~L~i~~g~~VLDIG~G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~  120 (322)
T PRK13943         72 FMEWVGLDKGMRVLEIGGG-TGYNAAVMSRVVGEKGLVVSVEYSRKICEI  120 (322)
T ss_pred             HHHhcCCCCCCEEEEEeCC-ccHHHHHHHHhcCCCCEEEEEECCHHHHHH
Confidence            3456678899999999987 58888899988763 369999998865543

>PRK06141 ornithine cyclodeaminase; Validated

Probab=81.09  E-value=5.9  Score=34.97  Aligned_cols=42  Identities=14%  Similarity=0.086  Sum_probs=33.9

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCCchhhh
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFE  240 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~-~~g~~~vi~~~~~~~~~~  240 (243)
                      -...++++|+|+|..|...+.... ..+..+|.+..++.++.+
T Consensus       122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~  164 (314)
T PRK06141        122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAE  164 (314)
T ss_pred             CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHH
Confidence            356789999999999999876444 478779999999987754

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=81.03  E-value=3.3  Score=38.33  Aligned_cols=35  Identities=20%  Similarity=0.249  Sum_probs=30.5

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      ++..+|||.|+ |.+|..++..+...|. +|+++++.
T Consensus       118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~  153 (436)
T PLN02166        118 RKRLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNF  153 (436)
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            45578999998 9999999999999999 89999864

>PRK06153 hypothetical protein; Provisional

Probab=80.94  E-value=2.4  Score=38.62  Aligned_cols=37  Identities=22%  Similarity=0.189  Sum_probs=32.3

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      -.+.+|+|+|.|++|..++..+...|.++++.+|...
T Consensus       174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~  210 (393)
T PRK06153        174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDD  210 (393)
T ss_pred             HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCE
Confidence            3567899999999999999999999999999998653

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=80.94  E-value=3.3  Score=34.05  Aligned_cols=36  Identities=31%  Similarity=0.423  Sum_probs=31.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ...+|+|+|.|++|..++......|.++++.+|...
T Consensus        18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~   53 (198)
T cd01485          18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL   53 (198)
T ss_pred             hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            347899999999999999999999999999998653

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PLN02852 ferredoxin-NADP+ reductase

Probab=80.85  E-value=3  Score=39.31  Aligned_cols=36  Identities=22%  Similarity=0.268  Sum_probs=30.2

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARL--CGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~--~g~~~vi~~~~~~  236 (243)
                      ..+++|+|+|+|+.|+.++..+..  .|. +|.++++.+
T Consensus        24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p   61 (491)
T PLN02852         24 SEPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLP   61 (491)
T ss_pred             CCCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCC
Confidence            346789999999999998887765  788 899998765

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=80.71  E-value=2.6  Score=35.95  Aligned_cols=36  Identities=25%  Similarity=0.372  Sum_probs=31.5

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ...+|+|+|.|++|.+++..+-..|++++..+|-.+
T Consensus        29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~   64 (263)
T COG1179          29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDD   64 (263)
T ss_pred             hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccc
Confidence            457899999999999999999999999999888543

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=80.52  E-value=3.1  Score=40.63  Aligned_cols=38  Identities=26%  Similarity=0.379  Sum_probs=31.9

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHc-CCCeEEEEcCCchh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEK  238 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~-g~~~vi~~~~~~~~  238 (243)
                      +++.+|||.|+ |.+|..+++.+... |. +|+++++.+..
T Consensus       313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~-~V~~l~r~~~~  352 (660)
T PRK08125        313 KRRTRVLILGVNGFIGNHLTERLLRDDNY-EVYGLDIGSDA  352 (660)
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHhCCCc-EEEEEeCCchh
Confidence            66789999998 99999999888775 67 89999986643

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=80.46  E-value=2  Score=41.07  Aligned_cols=39  Identities=13%  Similarity=0.302  Sum_probs=34.8

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       203 ~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +.++|.|.|.+|+..++..+..|. ++++++.++++.+.+
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~  456 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDEL  456 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHH
Confidence            678999999999999999999999 899999999887643

>PRK08618 ornithine cyclodeaminase; Validated

Probab=80.23  E-value=8.3  Score=34.18  Aligned_cols=42  Identities=19%  Similarity=0.116  Sum_probs=33.6

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCchhhh
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGA-RLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la-~~~g~~~vi~~~~~~~~~~  240 (243)
                      .+..++++|+|+|..|...+... ...++++|.+.+++.+|.+
T Consensus       124 ~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~  166 (325)
T PRK08618        124 REDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAY  166 (325)
T ss_pred             CCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHH
Confidence            34678999999999998777554 4678889999999987754

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=80.16  E-value=3.3  Score=37.85  Aligned_cols=36  Identities=17%  Similarity=0.178  Sum_probs=31.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ...+|+|+|+|++|..++..+..+|.++++.+|...
T Consensus        41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~   76 (392)
T PRK07878         41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV   76 (392)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence            456899999999999999999999999999988654

>PRK07411 hypothetical protein; Validated

Probab=80.10  E-value=3.3  Score=37.80  Aligned_cols=36  Identities=25%  Similarity=0.238  Sum_probs=31.9

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ...+|+|+|+|++|..+++.+..+|.++++.+|...
T Consensus        37 ~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~   72 (390)
T PRK07411         37 KAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV   72 (390)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            346899999999999999999999999999998654

>PRK12831 putative oxidoreductase; Provisional

Probab=80.02  E-value=3.5  Score=38.47  Aligned_cols=37  Identities=30%  Similarity=0.357  Sum_probs=32.2

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ...|++|+|+|+|.+|+-++..+..+|+ +|.++.+.+
T Consensus       278 ~~~gk~VvVIGgG~va~d~A~~l~r~Ga-~Vtlv~r~~  314 (464)
T PRK12831        278 IKVGKKVAVVGGGNVAMDAARTALRLGA-EVHIVYRRS  314 (464)
T ss_pred             ccCCCeEEEECCcHHHHHHHHHHHHcCC-EEEEEeecC
Confidence            4678999999999999999999999999 688887643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	243
3uko_A	378	Crystal Structure Of S-Nitrosoglutathione Reductase		5e-56
4dl9_A	396	Crystal Structure Of S-nitrosoglutathione Reductase		2e-54
3qj5_A	374	S-Nitrosoglutathione Reductase (Gsnor) In Complex W		6e-48
1teh_A	373	Structure Of Human Liver Chichi Alcohol Dehydrogena		8e-48
1mc5_A	374	Ternary Complex Of Human Glutathione-Dependent Form		9e-48
2fzw_A	373	Structure Of The Binary Complex Of The E67l Mutant		7e-47
1agn_A	373	X-Ray Structure Of Human Sigma Alcohol Dehydrogenas		3e-45
3cos_A	381	Crystal Structure Of Human Class Ii Alcohol Dehydro		3e-45
1d1t_A	373	Mutant Of Human Sigma Alcohol Dehydrogenase With Le		3e-45
1cdo_A	374	Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Co		2e-43
1e3l_A	376	P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase		9e-43
1p0c_A	373	Crystal Structure Of The Nadp(H)-Dependent Vertebra		6e-42
1e3e_A	376	Mouse Class Ii Alcohol Dehydrogenase Complex With N		1e-41
1qlh_A	374	Horse Liver Alcohol Dehydrogenase Complexed To Nad		2e-41
1n8k_A	374	Horse Liver Alcohol Dehydrogenase Val292thr Mutant		2e-41
1ju9_A	374	Horse Liver Alcohol Dehydrogenase Val292ser Mutant		2e-41
3oq6_A	374	Horse Liver Alcohol Dehydrogenase A317c Mutant Comp		2e-41
6adh_A	374	Structure Of Triclinic Ternary Complex Of Horse Liv		2e-41
1ee2_B	373	The Structure Of Steroid-Active Alcohol Dehydrogena		2e-41
1qv6_A	374	Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG		2e-41
1ee2_A	373	The Structure Of Steroid-Active Alcohol Dehydrogena		3e-41
1axg_A	374	Crystal Structure Of The Val203->ala Mutant Of Live		5e-41
1axe_A	374	Crystal Structure Of The Active-Site Mutant Phe93->		9e-41
1mgo_A	374	Horse Liver Alcohol Dehydrogenase Phe93ala Mutant L		2e-40
1a71_A	374	Ternary Complex Of An Active Site Double Mutant Of		2e-40
1ht0_A	374	Human Gamma-2 Alcohol Dehydrogense Length = 374		3e-39
1hdy_A	374	Three-Dimensional Structures Of Three Human Alcohol		4e-38
1htb_A	374	Crystallization Of Human Beta3 Alcohol Dehydrogenas		4e-37
1hdx_A	374	Three-Dimensional Structures Of Three Human Alcohol		4e-37
1hdz_A	374	Three-Dimensional Structures Of Three Human Alcohol		6e-37
1hso_A	374	Human Alpha Alcohol Dehydrogenase (Adh1a) Length =		1e-36
1f8f_A	371	Crystal Structure Of Benzyl Alcohol Dehydrogenase F		2e-18
3meq_A	365	Crystal Structure Of Alcohol Dehydrogenase From Bru		1e-07
2xaa_A	345	Alcohol Dehydrogenase Adh-'a' From Rhodococcus Rube		2e-07
1e3j_A	352	Ketose Reductase (Sorbitol Dehydrogenase) From Silv		1e-06
3s1l_A	340	Crystal Structure Of Apo-Form Furx Length = 340		1e-06
2h6e_A	344	Crystal Structure Of The D-Arabinose Dehydrogenase		3e-06
3ftn_A	352	Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDRO		6e-06
1rjw_A	339	Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd		9e-06
1jqb_A	351	Alcohol Dehydrogenase From Clostridium Beijerinckii		1e-05
3fsr_A	352	Chimera Of Alcohol Dehydrogenase By Exchange Of The		1e-05
3pii_A	339	Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog		1e-05
2b83_A	351	A Single Amino Acid Substitution In The Clostridium		2e-05
1llu_A	342	The Ternary Complex Of Pseudomonas Aeruginosa Alcoh		2e-05
1ped_A	351	Bacterial Secondary Alcohol Dehydrogenase (Apo-Form		3e-05
1ykf_A	352	Nadp-Dependent Alcohol Dehydrogenase From Thermoana		3e-05
2nvb_A	352	Contribution Of Pro275 To The Thermostability Of Th		3e-05
2oui_A	360	D275p Mutant Of Alcohol Dehydrogenase From Protozoa		9e-05
1y9a_A	360	Alcohol Dehydrogenase From Entamoeba Histolotica In		1e-04
3fpl_A	351	Chimera Of Alcohol Dehydrogenase By Exchange Of The		1e-04
4ilk_A	359	Crystal Structure Of Short Chain Alcohol Dehydrogen		1e-04
4ej6_A	370	Crystal Structure Of A Putative Zinc-Binding Dehydr		1e-04
2dfv_A	347	Hyperthermophilic Threonine Dehydrogenase From Pyro		7e-04
2d8a_A	348	Crystal Structure Of Ph0655 From Pyrococcus Horikos		7e-04

>pdb|3UKO|A Chain A, Crystal Structure Of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex With Nadh Length = 378

Iteration: 1
 Score =  213 bits (543), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 113/235 (48%), Positives = 149/235 (63%), Gaps = 8/235 (3%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T G+ I C+AA+A  P +PLVI++V V PP + EVR++I+ T+LCH+D   W  KD   +
Sbjct: 2   TQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEGL 61
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLC----SAFPF 125
           FP ILGHEA                    IP + A+C EC  C+S K NLC    SA   
Sbjct: 62  FPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGV 121
Query: 126 KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
            I   M  D+ SRF  + G+ I+HF+  S+FS+YTV+    V K+DPT P ++ CLL CG
Sbjct: 122 GI---MMNDRKSRF-SVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCG 177
Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
           V TG+GA W TA VE GS V IFGLG++GLAVAEGA+  GA+RIIG+D+ S+K+E
Sbjct: 178 VPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYE 232

>pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ Length = 396

Iteration: 1
 Score =  209 bits (531), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 108/235 (45%), Positives = 146/235 (62%), Gaps = 2/235 (0%)
Query: 7   SNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF 66
           S+ T G+ I C+AA+A  P +PLVI++V V PP + EVRV+++ T+LCH+D   W  KD 
Sbjct: 17  SSATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKVLYTALCHTDAYTWSGKDP 76
Query: 67  PAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFK 126
             +FP +LGHEA                    IP + A+C EC  C+S K NLC      
Sbjct: 77  EGLFPCVLGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAA 136
Query: 127 ISPW-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
                M  D+ SRF  + G+ I+HF+  S+FS+YTV+    V K+DP  P  + CLL CG
Sbjct: 137 TGVGVMMNDRKSRFS-INGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLEKVCLLGCG 195
Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
           V TG+GA W TA VE GS V +FGLG++GLAVAEGA+  GA+RIIG+D+ S+KF+
Sbjct: 196 VPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFD 250

>pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With N6022 Length = 374

Iteration: 1
 Score =  187 bits (474), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 98/230 (42%), Positives = 134/230 (58%), Gaps = 1/230 (0%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           +A + I+C+AA+A   G+PL I+E+ V PP +HEVR++II T++CH+D       D    
Sbjct: 1   SANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGC 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP ILGHE                     IP ++  C EC  C + K NLC         
Sbjct: 61  FPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGK 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL CG+STG
Sbjct: 121 GLMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239
            GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF
Sbjct: 180 YGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKF 229

>pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A Glutathione- Dependent Formaldehyde Dehydrogenase) Length = 373

Iteration: 1
 Score =  186 bits (473), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 98/229 (42%), Positives = 133/229 (58%), Gaps = 1/229 (0%)
Query: 11  AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF 70
           A + I+C+AA+A   G+PL I+E+ V PP +HEVR++II T++CH+D       D    F
Sbjct: 1   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCF 60
Query: 71  PRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           P ILGHE                     IP ++  C EC  C + K NLC          
Sbjct: 61  PVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 120
Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
           +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL CG+STG 
Sbjct: 121 LMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGY 179
Query: 191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239
           GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF
Sbjct: 180 GAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKF 228

>pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With S-(Hydroxymethyl)glutathione And Nadh Length = 374

Iteration: 1
 Score =  186 bits (472), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 98/229 (42%), Positives = 133/229 (58%), Gaps = 1/229 (0%)
Query: 11  AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF 70
           A + I+C+AA+A   G+PL I+E+ V PP +HEVR++II T++CH+D       D    F
Sbjct: 2   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCF 61
Query: 71  PRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           P ILGHE                     IP ++  C EC  C + K NLC          
Sbjct: 62  PVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 121
Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
           +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL CG+STG 
Sbjct: 122 LMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGY 180
Query: 191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239
           GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF
Sbjct: 181 GAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKF 229

>pdb|2FZW|A Chain A, Structure Of The Binary Complex Of The E67l Mutant Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With Nad(H) Length = 373

Iteration: 1
 Score =  183 bits (465), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 97/229 (42%), Positives = 132/229 (57%), Gaps = 1/229 (0%)
Query: 11  AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF 70
           A + I+C+AA+A   G+PL I+E+ V PP +HEVR++II T++CH+D       D    F
Sbjct: 1   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCF 60
Query: 71  PRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           P ILGH                      IP ++  C EC  C + K NLC          
Sbjct: 61  PVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 120
Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
           +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL CG+STG 
Sbjct: 121 LMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGY 179
Query: 191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239
           GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF
Sbjct: 180 GAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKF 228

>pdb|1AGN|A Chain A, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase Length = 373

Iteration: 1
 Score =  178 bits (451), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 96/231 (41%), Positives = 135/231 (58%), Gaps = 3/231 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+E+ V PP + EVR++I+ T +C +D    K     + 
Sbjct: 2   TAGKVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIK-GTMVSK 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP I+GHEA                    IP FL  C EC  CR+  GNLC         
Sbjct: 61  FPVIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIRSDI-TGR 119
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +  D T+RF   +G+ +HHF++ S+F+EYTV+D + V K+D   PP + CL+ CG STG
Sbjct: 120 GVLADGTTRFT-CKGKPVHHFMNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTG 178
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
            GAA +T  V+ GST V+FGLG +GL+V  G +  GA+RIIG+D+  +KFE
Sbjct: 179 YGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFE 229

>pdb|3COS|A Chain A, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase (Adh4) In Complex With Nad And Zn Length = 381

Iteration: 1
 Score =  178 bits (451), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 102/237 (43%), Positives = 132/237 (55%), Gaps = 5/237 (2%)
Query: 7   SNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF 66
           S  T GK I+C+AAIA   G+PL I+EV V PP +HEVR++II TSLCH+D T    K  
Sbjct: 1   SMGTKGKVIKCKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSKFE 60
Query: 67  PAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFK 126
              FP I+GHEA                    IP +   C +C  C S   NLC      
Sbjct: 61  GLAFPVIVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNL 120
Query: 127 ISP----WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 182
            SP     +  D+TSRF   +G+ ++HF   S+FS+YTV+   ++ K+D      R CLL
Sbjct: 121 KSPASDQQLMEDKTSRFT-CKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLL 179
Query: 183 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239
            CG STG GAA   A V  GST  +FGLG +GL+   G +  GA+RIIG+D+ SEKF
Sbjct: 180 GCGFSTGYGAAINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKF 236

>pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine At Position 141 Length = 373

Iteration: 1
 Score =  178 bits (451), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 96/231 (41%), Positives = 135/231 (58%), Gaps = 3/231 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+E+ V PP + EVR++I+ T +C +D    K     + 
Sbjct: 2   TAGKVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIK-GTMVSK 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP I+GHEA                    IP FL  C EC  CR+  GNLC         
Sbjct: 61  FPVIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIRSDI-TGR 119
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +  D T+RF   +G+ +HHF++ S+F+EYTV+D + V K+D   PP + CL+ CG STG
Sbjct: 120 GVLADGTTRFT-CKGKPVHHFLNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTG 178
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
            GAA +T  V+ GST V+FGLG +GL+V  G +  GA+RIIG+D+  +KFE
Sbjct: 179 YGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFE 229

>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed With Nicotinamide Adenine Dinucleotide (Nad), And Zinc Length = 374

Iteration: 1
 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 95/231 (41%), Positives = 132/231 (57%), Gaps = 1/231 (0%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T GK I+C+AA+A    +PLVI+E+ VD P+++E+R++II T +CH+D+           
Sbjct: 2   TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDG 61
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP +LGHE                     IP F++ C EC  C+S K N C       SP
Sbjct: 62  FPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESP 121
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +   + +RF   +G  +  F+  S+FS+YTV++   V K+DP+ P +  CLL CGVSTG
Sbjct: 122 DVMSPKETRFT-CKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTG 180
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
            GAA  TA VE GST  +FGLG++GLA   G    GA RII VD+  +KFE
Sbjct: 181 FGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFE 231

>pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  169 bits (429), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 98/234 (41%), Positives = 132/234 (56%), Gaps = 6/234 (2%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T GK I+C+AAIA   G PL I+E+ V PP + EVR+++I T +CH+D+     K   A+
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCHTDINATDPKK-KAL 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAF-PFK-- 126
           FP +LGHE                     IP F   C  C  C S   NLC     FK  
Sbjct: 61  FPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYP 120
Query: 127 -ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
            I   +  D+TSRF   +G +I+HF+ VSSFS+YTV+  A++ +VD      R CL+ CG
Sbjct: 121 TIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCG 179
Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239
            S+G GAA  TA V  GST  +FGLG +GL+   G ++ GA+RII +D+  EKF
Sbjct: 180 FSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKF 233

>pdb|1P0C|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Vertebrate Alcohol Dehydrogenase (Adh8) Length = 373

Iteration: 1
 Score =  167 bits (422), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 91/230 (39%), Positives = 127/230 (55%), Gaps = 3/230 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I C+AA+A  P +PL ++ + V PP +HEVR++I+ + +C SD +  K +  P+ 
Sbjct: 3   TAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLK-EIIPSK 61
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP ILGHEA+                   IP F+  C  C  C+S   N C         
Sbjct: 62  FPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKT 121
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +  D TSRF   RG+ I++ +  S+F+EYTV+    V K+DP  P   +CL+ CG +TG
Sbjct: 122 GLMADMTSRF-TCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPL-ESCLIGCGFATG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239
            GAA  TA V  GST  +FGLG +G +   G +  GA+RIIGV    +KF
Sbjct: 180 YGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKF 229

>pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 97/234 (41%), Positives = 131/234 (55%), Gaps = 6/234 (2%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T GK I+C+AAIA   G PL I+E+ V PP + EVR+++I T +C +D+     K   A+
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKK-KAL 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAF-PFK-- 126
           FP +LGHE                     IP F   C  C  C S   NLC     FK  
Sbjct: 61  FPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYP 120
Query: 127 -ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
            I   +  D+TSRF   +G +I+HF+ VSSFS+YTV+  A++ +VD      R CL+ CG
Sbjct: 121 TIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCG 179
Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239
            S+G GAA  TA V  GST  +FGLG +GL+   G ++ GA+RII +D+  EKF
Sbjct: 180 FSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKF 233

>pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nad Double Mutant Of Gly 293 Ala And Pro 295 Thr Length = 374

Iteration: 1
 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 92/230 (40%), Positives = 124/230 (53%), Gaps = 2/230 (0%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKF 229

>pdb|1N8K|A Chain A, Horse Liver Alcohol Dehydrogenase Val292thr Mutant Complexed To Nad+ And Pyrazole Length = 374

Iteration: 1
 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 92/230 (40%), Positives = 124/230 (53%), Gaps = 2/230 (0%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKF 229

>pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val292ser Mutant Length = 374

Iteration: 1
 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 92/230 (40%), Positives = 124/230 (53%), Gaps = 2/230 (0%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKF 229

>pdb|3OQ6|A Chain A, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 92/230 (40%), Positives = 124/230 (53%), Gaps = 2/230 (0%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKF 229

>pdb|6ADH|A Chain A, Structure Of Triclinic Ternary Complex Of Horse Liver Alcohol Dehydrogenase At 2.9 Angstroms Resolution Length = 374

Iteration: 1
 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 92/230 (40%), Positives = 124/230 (53%), Gaps = 2/230 (0%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKF 229

>pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/234 (41%), Positives = 128/234 (54%), Gaps = 11/234 (4%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++   +C SD          A 
Sbjct: 2   TAGKVIKCKAAVLWEQKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSD-DHVVSGTLVAP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F+  C +C  C+  +GNLC       + 
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLCLK-----NL 115
Query: 130 WMPR----DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
            MPR    D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG
Sbjct: 116 SMPRGTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCG 174
Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239
            STG G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF
Sbjct: 175 FSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKF 228

>pdb|1QV6|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 91/230 (39%), Positives = 124/230 (53%), Gaps = 2/230 (0%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDQVVS-GTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  ++F
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDRF 229

>pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  165 bits (417), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 96/234 (41%), Positives = 128/234 (54%), Gaps = 11/234 (4%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++   +C SD          A 
Sbjct: 2   TAGKVIKCKAAVLWEQKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSD-DHVVSGTLVAP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F+  C +C  C+  +GNLC       + 
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLCLK-----NL 115
Query: 130 WMPR----DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
            MPR    D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG
Sbjct: 116 SMPRGTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCG 174
Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239
            STG G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF
Sbjct: 175 FSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKF 228

>pdb|1AXG|A Chain A, Crystal Structure Of The Val203->ala Mutant Of Liver Alcohol Dehydrogenase Complexed With Cofactor Nad And Inhibitor Trifluoroethanol Solved To 2.5 Angstrom Resolution Length = 374

Iteration: 1
 Score =  164 bits (414), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 92/230 (40%), Positives = 123/230 (53%), Gaps = 2/230 (0%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239
            G+A + A V  GST  +FGLG  GL+V  G +  GA RIIGVD+  +KF
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKF 229

>pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of Horse Liver Alcohol Dehydrogenase In Complex With Nad And Inhibitor Trifluoroethanol Length = 374

Iteration: 1
 Score =  163 bits (412), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 91/230 (39%), Positives = 124/230 (53%), Gaps = 2/230 (0%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP +   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKF 229

>pdb|1MGO|A Chain A, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant Length = 374

Iteration: 1
 Score =  162 bits (409), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 91/230 (39%), Positives = 123/230 (53%), Gaps = 2/230 (0%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP     C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLATPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKF 229

>pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With Nad And Trifluoroethanol Length = 374

Iteration: 1
 Score =  161 bits (408), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 91/230 (39%), Positives = 123/230 (53%), Gaps = 2/230 (0%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVS-GTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP +   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239
            G+A + A V  GST  +FGLG  GL+V  G +  GA RIIGVD+  +KF
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKF 229

>pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense Length = 374

Iteration: 1
 Score =  158 bits (399), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 90/230 (39%), Positives = 122/230 (53%), Gaps = 2/230 (0%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++   +C SD       +    
Sbjct: 2   TAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDEHVVS-GNLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P ILGHEA                    IP F   C +C  C++ + N C         
Sbjct: 61  LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRICKNPESNYCLKNDLGNPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D T RF    G+ IHHFV VS+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTLQDGTRRF-TCSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239
            G+A + A V  GST  +FGLG +GL+V  G +  GA RII VD+  +KF
Sbjct: 180 YGSAVKVAKVTPGSTCAVFGLGGVGLSVVMGCKAAGAARIIAVDINKDKF 229

>pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  154 bits (389), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 86/230 (37%), Positives = 121/230 (52%), Gaps = 2/230 (0%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I++V V PP ++EVR++++   +CH+D       +    
Sbjct: 2   TAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICHTD-DHVVSGNLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P ILGHEA                    IP F   C +C  C++ + N C         
Sbjct: 61  LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D T RF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239
            G+A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF
Sbjct: 180 YGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKF 229

>pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10 MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+ And 1 Mm 4-Iodopyrazole At 25 C Length = 374

Iteration: 1
 Score =  151 bits (381), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 85/230 (36%), Positives = 120/230 (52%), Gaps = 2/230 (0%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I++V V PP ++EVR++++   +C +D       +    
Sbjct: 2   TAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTD-DHVVSGNLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P ILGHEA                    IP F   C +C  C++ + N C         
Sbjct: 61  LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D T RF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239
            G+A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF
Sbjct: 180 YGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKF 229

>pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  151 bits (381), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 85/230 (36%), Positives = 120/230 (52%), Gaps = 2/230 (0%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I++V V PP ++EVR++++   +C +D       +    
Sbjct: 2   TAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTD-DHVVSGNLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P ILGHEA                    IP F   C +C  C++ + N C         
Sbjct: 61  LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D T RF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239
            G+A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF
Sbjct: 180 YGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKF 229

>pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  150 bits (379), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 85/230 (36%), Positives = 120/230 (52%), Gaps = 2/230 (0%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I++V V PP ++EVR++++   +C +D       +    
Sbjct: 2   TAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICGTD-DHVVSGNLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P ILGHEA                    IP F   C +C  C++ + N C         
Sbjct: 61  LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D T RF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239
            G+A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF
Sbjct: 180 YGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKF 229

>pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a) Length = 374

Iteration: 1
 Score =  149 bits (377), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/232 (37%), Positives = 122/232 (52%), Gaps = 6/232 (2%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSD--VTFWKMKDFP 67
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++   +C +D  V    M    
Sbjct: 2   TAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAVGICGTDDHVVSGTM---V 58
Query: 68  AVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
              P ILGHEA                    IP  +  C +C  C++ + N C       
Sbjct: 59  TPLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLAIPQCGKCRICKNPESNYCLKNDVSN 118
Query: 128 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187
                +D TSRF   R + IHHF+ +S+FS+YTV+D   V K+D   P  + CL+ CG S
Sbjct: 119 PQGTLQDGTSRFT-CRRKPIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFS 177
Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239
           TG G+A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF
Sbjct: 178 TGYGSAVNVAKVTPGSTCAVFGLGGVGLSAIMGCKAAGAARIIAVDINKDKF 229

>pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From Acinetobacter Calcoaceticus Length = 371

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 97/226 (42%), Gaps = 3/226 (1%)
Query: 19  AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEA 78
           AA+    G    +  + +  P   EV V+++ T +CH+D+     K +P   P +LGHE 
Sbjct: 9   AAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQK-YPVPLPAVLGHEG 67
Query: 79  IXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFK-ISPWMPRDQTS 137
                               +  +   C +C  C +     CS F  +  S        +
Sbjct: 68  SGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHA 126
Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
                +G    HF + SSF+ Y +    + VKV   VP      L CG+ TG GA     
Sbjct: 127 LCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINAL 186
Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
            V   S+ V +G G++GL+    A++CGA+ II VD++  + E+ +
Sbjct: 187 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAK 232

>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella Mel Length = 365

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 90/231 (38%), Gaps = 36/231 (15%)
Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF----WKMKDFPAVFPRI 73
           +AA+  A G+PL IDEV +  P   +++V I  + +CH+D+      W +K  P   P I
Sbjct: 27  KAAVVRAFGKPLTIDEVPIPQPGPGQIQVAIQASGVCHTDLHAAEGDWPVKPNP---PFI 83
Query: 74  LGHEAIX-XXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
            GHE +                    IP     C  C  C      LC            
Sbjct: 84  PGHEGVGFVSAVGSGVKHVKEGDRVGIPWLYTACGHCRHCLGGWETLCE----------- 132
Query: 133 RDQTSRFKDLRGETIHHFVSVS-SFSEYTVLDIAHVVKVDPTVPPNR-ACLLSCGVSTGV 190
                       E ++   SV+  F+EY V D   V  +   +  N  A +L  GV+  V
Sbjct: 133 ------------EQLNTGYSVNGGFAEYVVADPNFVGHLPKNIDFNEIAPVLCAGVT--V 178
Query: 191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
               +  + + G  VVI G+G +G    + AR  G   +  VD+   K ++
Sbjct: 179 YKGLKVTDTKPGDWVVISGIGGLGHMAVQYARAMG-LNVAAVDIDDRKLDL 228

>pdb|2XAA|A Chain A, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm 44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol Length = 345

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 83/218 (38%), Gaps = 21/218 (9%)
Query: 27  EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM--KDFPAVFPRILGHEAIXXXXX 84
           EP+V+D +    P   E+ +++    LCHSD+    M    +    P  LGHE +     
Sbjct: 12  EPVVVD-IPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAE 70
Query: 85  XXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRG 144
                           +    C  C  C   + N C+                R  DL G
Sbjct: 71  LGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCT----------------RAADL-G 113
Query: 145 ETIHHFVSVSSFSEYTVLDIA-HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGS 203
            T     S  S +EY ++D A H+V +    P   A L   G++     +     +  GS
Sbjct: 114 ITPPGLGSPGSMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISRVLPLLGPGS 173
Query: 204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
           T V+ G+G +G    +  R   A R+I VD+  ++  +
Sbjct: 174 TAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLAL 211

>pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenase) From Silverleaf Whitefly Length = 352

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 78/201 (38%), Gaps = 26/201 (12%)
Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW---KMKDFPAVFPRILGHEAIXXXXXX 85
           L +++  +  P   EV +++    +C SDV ++   ++ DF    P ++GHEA       
Sbjct: 16  LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKV 75
Query: 86  XXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGE 145
                               C  C  C+  K NLC    F  +P  P D         G 
Sbjct: 76  GKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATP--PDD---------GN 124
Query: 146 TIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTV 205
              ++V  + F            K+   V      LL   +S GV  A R A V++G+TV
Sbjct: 125 LARYYVHAADFCH----------KLPDNVSLEEGALLE-PLSVGV-HACRRAGVQLGTTV 172
Query: 206 VIFGLGSIGLAVAEGARLCGA 226
           ++ G G IGL     A+  GA
Sbjct: 173 LVIGAGPIGLVSVLAAKAYGA 193

>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx Length = 340

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 87/228 (38%), Gaps = 30/228 (13%)
Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPA--VFPRILG 75
           +AA+  A G PL IDEV V  P   +V+V+I  + +CH+D+      D+P     P I G
Sbjct: 4   KAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAAD-GDWPVKPTLPFIPG 62
Query: 76  HEAIXXXXXXXXXXXXXXXX-XXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           HE +                    +P   + C  C  C      LC            + 
Sbjct: 63  HEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCE-----------KQ 111
Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV-DPTVPPNRACLLSCGVSTGVGAA 193
           Q + +    G           + EY V D  +V  + D       A +L  GV+  V   
Sbjct: 112 QNTGYSVNGG-----------YGEYVVADPNYVGLLPDKVGFVEIAPILCAGVT--VYKG 158
Query: 194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
            +  +   G  VVI G+G +G    + AR  G  R+  VD+   K  +
Sbjct: 159 LKVTDTRPGQWVVISGIGGLGHVAVQYARAMG-LRVAAVDIDDAKLNL 205

>pdb|2H6E|A Chain A, Crystal Structure Of The D-Arabinose Dehydrogenase From Sulfolobus Solfataricus Length = 344

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 73/181 (40%), Gaps = 27/181 (14%)
Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF--PR 72
           ++ +AA+     EPL I++V +  P   EV +RI    +C +D+  WK  +    F  P 
Sbjct: 2   VKSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPI 61
Query: 73  ILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           ILGHE                     +     D T C  CR  K N+C     +I P   
Sbjct: 62  ILGHENAGTIVEVGELAKVKKGDNVVVYATWGDLT-CRYCREGKFNICKN---QIIP--- 114
Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH-VVKVDPTVPPNRACLLSCGVSTGVG 191
                      G+T +       FSEY ++  +  +VK++   P   A L   G +T +G
Sbjct: 115 -----------GQTTN-----GGFSEYMLVKSSRWLVKLNSLSPVEAAPLADAG-TTSMG 157
Query: 192 A 192
           A
Sbjct: 158 A 158

>pdb|3FTN|A Chain A, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE BY EXCHANGE Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 8/95 (8%)
Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
           +F +++      F  V+       +++AH+ K    +P   A ++   ++TG   A   A
Sbjct: 111 KFSNVKDGVFGEFFHVNDAD----MNLAHLPK---EIPLEAAVMIPDMMTTGFHGA-ELA 162
Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV 232
           ++E+GS+VV+ G+G++GL    GA+L GA RIIGV
Sbjct: 163 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGV 197

>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 88/230 (38%), Gaps = 30/230 (13%)
Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPA--VFPRILG 75
           +AA+     EPL I EV     +  EV VRI    +CH+D+      D+P     P I G
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDL-HAAHGDWPVKPKLPLIPG 60
Query: 76  HEAIXXXXXXX-XXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           HE +                    IP   + C  C  C S +  LC              
Sbjct: 61  HEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLC------------EH 108
Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAA 193
           Q +    + G           ++EY      +VVK+   +    A  + C GV+T    A
Sbjct: 109 QKNAGYSVDG----------GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTT--YKA 156
Query: 194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
            +    + G  V I+G+G +G    + A+  G   ++ VD+  EK E+ +
Sbjct: 157 LKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMG-LNVVAVDIGDEKLELAK 205

>pdb|1JQB|A Chain A, Alcohol Dehydrogenase From Clostridium Beijerinckii: Crystal Structure Of Mutant With Enhanced Thermal Stability Length = 351

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 156 FSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSI 213
           F EY  ++ A  ++  +   +P   A +++  ++TG   A   A++E+GS+VV+ G+G++
Sbjct: 120 FGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAV 178
Query: 214 GLAVAEGARLCGATRIIGV 232
           GL    GA+L GA RIIGV
Sbjct: 179 GLMGIAGAKLRGAGRIIGV 197

>pdb|3FSR|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 8/95 (8%)
Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
           +F +++      F  V+       +++AH+ K    +P   A ++   ++TG   A   A
Sbjct: 111 KFSNVKDGVFGEFFHVNDAD----MNLAHLPK---EIPLEAAVMIPDMMTTGFHGA-ELA 162
Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV 232
           ++++GS+VV+ G+G++GL    GA+L GA RIIGV
Sbjct: 163 DIQMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGV 197

>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 87/230 (37%), Gaps = 30/230 (13%)
Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPA--VFPRILG 75
           +AA+     EPL I EV     +  EV VRI    +CH+D+      D+P     P I G
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDL-HAAHGDWPVKPKLPLIPG 60
Query: 76  HEAIXXXXXXX-XXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           HE +                    IP   + C  C  C S +  LC              
Sbjct: 61  HEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLC------------EH 108
Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAA 193
           Q +    + G           ++EY      +VVK+   +    A  + C GV+T    A
Sbjct: 109 QKNAGYSVDG----------GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTT--YKA 156
Query: 194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
            +    + G  V I+G+G  G    + A+  G   ++ VD+  EK E+ +
Sbjct: 157 LKVTGAKPGEWVAIYGIGGFGHVAVQYAKAMG-LNVVAVDIGDEKLELAK 205

>pdb|2B83|A Chain A, A Single Amino Acid Substitution In The Clostridium Beijerinckii Alcohol Dehydrogenase Is Critical For Thermostabilization Length = 351

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 121 SAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPTVPPNR 178
           + FP   +  +   + S FKD              F EY  ++ A  ++  +   +P   
Sbjct: 97  AGFPQHSNGMLAGWKFSNFKD------------GVFGEYFHVNDADMNLAILPKDMPLEN 144
Query: 179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV 232
           A +++  ++TG   A   A++++GS+VV+ G+G++GL    GA+L GA RIIGV
Sbjct: 145 AVMITDMMTTGFHGA-ELADIQMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGV 197

>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Its Coenzyme And Weak Substrate Length = 342

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 88/232 (37%), Gaps = 30/232 (12%)
Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV--FP 71
           P   +AA+  A G PL I+EV V  P   +V V+I  + +CH+D+   +  D+P     P
Sbjct: 4   PQTMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAE-GDWPVKPPLP 62
Query: 72  RILGHEAIXXXXXXXXXXXXXXXX-XXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
            I GHE +                    IP     C  C  C +    LC +        
Sbjct: 63  FIPGHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCES-------- 114
Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP-PNRACLLSCGVSTG 189
               Q +    + G           ++EY + D  +V  +   V     A +L  GV+  
Sbjct: 115 ----QQNTGYSVNG----------GYAEYVLADPNYVGILPKNVEFAEIAPILCAGVT-- 158
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
           V    +  N   G  V I G+G +G    + AR  G   +  +D+   K E+
Sbjct: 159 VYKGLKQTNARPGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDIDDAKLEL 209

>pdb|1PED|A Chain A, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form) Length = 351

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 156 FSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSI 213
           F EY  ++ A  ++  +   +P   A +++  ++TG   A   A++++GS+VV+ G+G++
Sbjct: 120 FGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIQMGSSVVVIGIGAV 178
Query: 214 GLAVAEGARLCGATRIIGV 232
           GL    GA+L GA RIIGV
Sbjct: 179 GLMGIAGAKLRGAGRIIGV 197

>pdb|1YKF|A Chain A, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium Brockii Length = 352

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
           +F +++      F  V+       +++AH+ K    +P   A ++   ++TG   A   A
Sbjct: 111 KFSNVKDGVFGEFFHVNDAD----MNLAHLPK---EIPLEAAVMIPDMMTTGFHGA-ELA 162
Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV 232
           ++E+G+TV + G+G +GL    GA+L GA RII V
Sbjct: 163 DIELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAV 197

>pdb|2NVB|A Chain A, Contribution Of Pro275 To The Thermostability Of The Alcohol Dehydrogenases (Adhs) Length = 352

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
           +F +++      F  V+       +++AH+ K    +P   A ++   ++TG   A   A
Sbjct: 111 KFSNVKDGVFGEFFHVNDAD----MNLAHLPK---EIPLEAAVMIPDMMTTGFHGA-ELA 162
Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV 232
           ++E+G+TV + G+G +GL    GA+L GA RII V
Sbjct: 163 DIELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAV 197

>pdb|2OUI|A Chain A, D275p Mutant Of Alcohol Dehydrogenase From Protozoa Entamoeba Histolytica Length = 360

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 15/139 (10%)
Query: 108 ECVGCRSKKGNLCSAFPF-------KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYT 160
           E VG   K G+L              I+P    +++ R   +    +      S+F +  
Sbjct: 60  EAVGQIVKVGSLVKRLKVGDKVIVPAITPDWGEEESQRGYPMHSGGMLGGWKFSNFKDGV 119
Query: 161 VLDIAHVVKVDPT-------VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSI 213
             ++ HV + D         + P  A +LS  V+TG   A   AN+++G TV + G+G +
Sbjct: 120 FSEVFHVNEADANLALLPRDIKPEDAVMLSDMVTTGFHGA-ELANIKLGDTVCVIGIGPV 178
Query: 214 GLAVAEGARLCGATRIIGV 232
           GL    GA   GA RI  V
Sbjct: 179 GLMSVAGANHLGAGRIFAV 197

>pdb|1Y9A|A Chain A, Alcohol Dehydrogenase From Entamoeba Histolotica In Complex With Cacodylate Length = 360

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 154 SSFSEYTVLDIAHVVKVDPT-------VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVV 206
           S+F +    ++ HV + D         + P  A +LS  V+TG   A   AN+++G TV 
Sbjct: 113 SNFKDGVFSEVFHVNEADANLALLPRDIKPEDAVMLSDMVTTGFHGA-ELANIKLGDTVC 171
Query: 207 IFGLGSIGLAVAEGARLCGATRIIGV 232
           + G+G +GL    GA   GA RI  V
Sbjct: 172 VIGIGPVGLMSVAGANHLGAGRIFAV 197

>pdb|3FPL|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of C. Beijerinckii Adh By T. Brockii Adh Length = 351

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 156 FSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSI 213
           F EY  ++ A  ++  +   +P   A +++  ++TG   A   A++E+G+TV + G+G +
Sbjct: 120 FGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIELGATVAVLGIGPV 178
Query: 214 GLAVAEGARLCGATRIIGV 232
           GL    GA+L GA RII V
Sbjct: 179 GLMAVAGAKLRGAGRIIAV 197

>pdb|4ILK|A Chain A, Crystal Structure Of Short Chain Alcohol Dehydrogenase (rspb) From E. Coli Cft073 (efi Target Efi-506413) Complexed With Cofactor Nadh Length = 359

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 80/215 (37%), Gaps = 29/215 (13%)
Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIXXXXXXXXX 88
           L I E  +  P++ EVRV++    +C SD   ++  +  A +PR++GHE           
Sbjct: 32  LSIIEREIPTPSAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEG 91
Query: 89  XXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH 148
                         +  C  C  C   K N+C+                    L    +H
Sbjct: 92  VESARVGERVAVDPVVSCGHCYPCSIGKPNVCTT-------------------LAVLGVH 132
Query: 149 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS--CGVSTGVGAAWRTANVEVGSTVV 206
              +   FSEY V+   +  K+   V    A ++      +   G    T N     TV+
Sbjct: 133 ---ADGGFSEYAVVPAKNAWKIPEAVADQYAVMIEPFTIAANVTGHGQPTEN----DTVL 185
Query: 207 IFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFE 240
           ++G G IGL + +  + +     +I  D I E+ E
Sbjct: 186 VYGAGPIGLTIVQVLKGVYNVKNVIVADRIDERLE 220

>pdb|4EJ6|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase (Target Psi-012003) From Sinorhizobium Meliloti 1021 Length = 370

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 74/197 (37%), Gaps = 35/197 (17%)
Query: 39  PNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE--AIXXXXXXXXXXXXXXXXX 96
           P   ++ V++    +C +D       +FP+  P  LGHE   I                 
Sbjct: 45  PGPDDLLVKVEACGICGTDRHLLH-GEFPSTPPVTLGHEFCGIVVEAGSAVRDIAPGARI 103
Query: 97  XXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSF 156
              P+    C  C  C++ + NLC                   ++LR   IH       F
Sbjct: 104 TGDPNI--SCGRCPQCQAGRVNLC-------------------RNLRAIGIHRD---GGF 139
Query: 157 SEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSI 213
           +EY ++      ++  T+ P        L+C +          + ++ GSTV I G G I
Sbjct: 140 AEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCLH-----GVDLSGIKAGSTVAILGGGVI 194
Query: 214 GLAVAEGARLCGATRII 230
           GL   + ARL GAT +I
Sbjct: 195 GLLTVQLARLAGATTVI 211

>pdb|2DFV|A Chain A, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus Horikoshii Length = 347

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 83/218 (38%), Gaps = 34/218 (15%)
Query: 19  AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF---PRILG 75
           A   T PG    + EV V  P   EV ++++ TS+C +D+  ++  ++       P+I G
Sbjct: 6   AIXKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIXG 65
Query: 76  HEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
           HE                            C +C  CR  + ++C              Q
Sbjct: 66  HEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVC--------------Q 111
Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGA 192
            ++   +  + +        F+EY V+   ++ K   ++PP  A L   L   V T +  
Sbjct: 112 NTKIFGVDTDGV--------FAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTVL-- 161
Query: 193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRII 230
               A    G +V+I G G +GL     A+  GA  +I
Sbjct: 162 ----AGPISGKSVLITGAGPLGLLGIAVAKASGAYPVI 195

>pdb|2D8A|A Chain A, Crystal Structure Of Ph0655 From Pyrococcus Horikoshii Ot3 Length = 348

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 83/218 (38%), Gaps = 34/218 (15%)
Query: 19  AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF---PRILG 75
           A   T PG    + EV V  P   EV ++++ TS+C +D+  ++  ++       P+I G
Sbjct: 7   AIXKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIXG 66
Query: 76  HEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
           HE                            C +C  CR  + ++C              Q
Sbjct: 67  HEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVC--------------Q 112
Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGA 192
            ++   +  + +        F+EY V+   ++ K   ++PP  A L   L   V T +  
Sbjct: 113 NTKIFGVDTDGV--------FAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTVL-- 162
Query: 193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRII 230
               A    G +V+I G G +GL     A+  GA  +I
Sbjct: 163 ----AGPISGKSVLITGAGPLGLLGIAVAKASGAYPVI 196

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	243
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	1e-121
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	1e-119
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	1e-118
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	1e-117
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	1e-117
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	2e-92
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	5e-80
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	6e-53
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	4e-43
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	2e-39
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	9e-39
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	3e-38
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	4e-37
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	5e-37
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	4e-34
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	4e-34
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	4e-33
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	1e-31
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	6e-31
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	2e-30
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	9e-30
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	1e-29
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	7e-29
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	5e-28
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	1e-26
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	6e-21
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	1e-20
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	2e-20
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	1e-17
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	2e-17
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	5e-17
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	1e-15
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	1e-15
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	2e-15
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	5e-15
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	2e-14
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	5e-14
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	1e-12
3gms_A	340	Putative NADPH:quinone reductase; structural genom	7e-12
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	1e-10
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	3e-10
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	7e-10
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	3e-09
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	4e-09
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	4e-09
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	5e-09
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	8e-09
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	2e-08
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	4e-08
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	2e-07
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	2e-07
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	3e-07
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	4e-07
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	1e-06
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	1e-06
4eye_A	342	Probable oxidoreductase; structural genomics, niai	4e-06
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	2e-04
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	3e-04
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	3e-04

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score =  348 bits (894), Expect = e-121
 Identities = 108/233 (46%), Positives = 146/233 (62%), Gaps = 1/233 (0%)

Query: 11  AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF 70
           A + I+C+AA+A   G+PL I+E+ V PP +HEVR++II T++CH+D       D    F
Sbjct: 1   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCF 60

Query: 71  PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           P ILGH   G+VESVGE V  +  GD VIP ++  C EC  C + K NLC          
Sbjct: 61  PVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 120

Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
           +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL CG+STG 
Sbjct: 121 LMPDGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGY 179

Query: 191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
           GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF   +
Sbjct: 180 GAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK 232

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score =  342 bits (880), Expect = e-119
 Identities = 104/234 (44%), Positives = 144/234 (61%), Gaps = 1/234 (0%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T GK I+C+AA+A    +PLVI+E+ VD P+++E+R++II T +CH+D+           
Sbjct: 2   TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDG 61

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP +LGHE  G+VESVG  V     G+ VIP F++ C EC  C+S K N C       SP
Sbjct: 62  FPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESP 121

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +   + +RF   +G  +  F+  S+FS+YTV++   V K+DP+ P +  CLL CGVSTG
Sbjct: 122 DVMSPKETRFT-CKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTG 180

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
            GAA  TA VE GST  +FGLG++GLA   G    GA RII VD+  +KFE  +
Sbjct: 181 FGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK 234

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score =  342 bits (879), Expect = e-118
 Identities = 105/238 (44%), Positives = 141/238 (59%), Gaps = 6/238 (2%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T GK I+C+AAIA   G PL I+E+ V PP + EVR+++I T +C +D+     K   A+
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKK-KAL 60

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP +LGHE  G+VESVG  V     GD VIP F   C  C  C S   NLC        P
Sbjct: 61  FPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYP 120

Query: 130 W----MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
                +  D+TSRF   +G +I+HF+ VSSFS+YTV+  A++ +VD      R CL+ CG
Sbjct: 121 TIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCG 179

Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
            S+G GAA  TA V  GST  +FGLG +GL+   G ++ GA+RII +D+  EKF   +
Sbjct: 180 FSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK 237

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score =  338 bits (870), Expect = e-117
 Identities = 102/234 (43%), Positives = 138/234 (58%), Gaps = 3/234 (1%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I C+AA+A  P +PL ++ + V PP +HEVR++I+ + +C SD +  K    P+ 
Sbjct: 3   TAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEII-PSK 61

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP ILGHEA+GVVES+G  V  V  GD VIP F+  C  C  C+S   N C         
Sbjct: 62  FPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKT 121

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +  D TSRF   RG+ I++ +  S+F+EYTV+    V K+DP  P   +CL+ CG +TG
Sbjct: 122 GLMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLE-SCLIGCGFATG 179

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
            GAA  TA V  GST  +FGLG +G +   G +  GA+RIIGV    +KF    
Sbjct: 180 YGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI 233

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score =  338 bits (869), Expect = e-117
 Identities = 103/234 (44%), Positives = 138/234 (58%), Gaps = 2/234 (0%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL-VTP 60

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA G+VES+GE V  V  GD VIP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   +
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK 233

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score =  275 bits (705), Expect = 2e-92
 Identities = 65/230 (28%), Positives = 107/230 (46%), Gaps = 3/230 (1%)

Query: 13  KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPR 72
           +     AA+    G    +  + +  P   EV V+++ T +CH+D+     + +P   P 
Sbjct: 3   ELKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRD-QKYPVPLPA 61

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           +LGHE  G++E++G NV  +  GD V+  +   C +C  C +     CS F  +      
Sbjct: 62  VLGHEGSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGAD 120

Query: 133 RDQTSRFKDLRGET-IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG 191
            +               HF + SSF+ Y +    + VKV   VP      L CG+ TG G
Sbjct: 121 SEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAG 180

Query: 192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
           A      V   S+ V +G G++GL+    A++CGA+ II VD++  + E+
Sbjct: 181 ACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLEL 230

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score =  244 bits (624), Expect = 5e-80
 Identities = 57/234 (24%), Positives = 88/234 (37%), Gaps = 19/234 (8%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRI 73
            ++  A +     +PLV  E  +       + V I+   +C SDV  ++ +D     P I
Sbjct: 15  GLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPII 74

Query: 74  LGHEAIGVVESVGENVDG-----VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKIS 128
           LGHE  G V  V           +  GD+++ +    C EC  C+  K            
Sbjct: 75  LGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYG 134

Query: 129 PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH-VVKVDPTVPPNRACLLSCGVS 187
             + R   S +  LRG           +S + VLD    V+KV      +   +  C  +
Sbjct: 135 --INRG-CSEYPHLRG----------CYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGA 181

Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
           T   A         G TVVI G G +GL     AR  GA  +I +     + ++
Sbjct: 182 TAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKL 235

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score =  173 bits (441), Expect = 6e-53
 Identities = 56/226 (24%), Positives = 89/226 (39%), Gaps = 20/226 (8%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM--KDFPAVFPRILG 75
           +A   T  G   V+ ++    P   E+ +++    LCHSD+    M    +    P  LG
Sbjct: 2   KAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLG 61

Query: 76  HEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
           HE +G V  +GE V G   GD V  +    C  C  C   + N C+              
Sbjct: 62  HEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRA------------ 109

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAAW 194
                   G T     S  S +EY ++D A  +     + P  A  L+  G++     + 
Sbjct: 110 -----ADLGITPPGLGSPGSMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISR 164

Query: 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
               +  GST V+ G+G +G    +  R   A R+I VD+  ++  
Sbjct: 165 VLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLA 210

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score =  148 bits (376), Expect = 4e-43
 Identities = 54/231 (23%), Positives = 90/231 (38%), Gaps = 30/231 (12%)

Query: 18  RAAIATAPGEPLVIDEVIV-DPPNSHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRI 73
           +AA      +PL I++V         +V VRI    +CH+D+   +    +      P  
Sbjct: 17  KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYT 76

Query: 74  LGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR 133
           LGHE +G +E V E V+G+ +GD VI H       C+ CR+ +   C    F        
Sbjct: 77  LGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFP------- 129

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR---ACLLSCGVSTGV 190
                     G  I        F+E+       V+K+   +   +      L+    T  
Sbjct: 130 ----------GLNID-----GGFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAY 174

Query: 191 GAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
            A  +    +  G+ V I G+G +G    +  ++     +I +DV  EK +
Sbjct: 175 RAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLK 225

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score =  138 bits (350), Expect = 2e-39
 Identities = 52/229 (22%), Positives = 86/229 (37%), Gaps = 36/229 (15%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +A    + G  + +  V +  P   ++ V++    +C +D       +FP+  P  LGHE
Sbjct: 25  KAVRLESVGN-ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLH-GEFPSTPPVTLGHE 82

Query: 78  AIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
             G+V   G  V  +  G      P+    C  C  C++ + NLC               
Sbjct: 83  FCGIVVEAGSAVRDIAPGARITGDPNIS--CGRCPQCQAGRVNLCRNLRA---------- 130

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGA 192
                   G           F+EY ++      ++  T+ P        L+C +      
Sbjct: 131 -------IGIHRD-----GGFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCL-----H 173

Query: 193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
               + ++ GSTV I G G IGL   + ARL GAT +I     + K  +
Sbjct: 174 GVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRL 222

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score =  136 bits (345), Expect = 9e-39
 Identities = 57/235 (24%), Positives = 96/235 (40%), Gaps = 38/235 (16%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK--------MKDFPAV 69
           RA      G+PL + E+ V  P   +V +++    +CHSDV   +        ++D    
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P  LGHE  G +E VG+ V G  +GD+V  +       C  CR  + +LC +  +    
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWL--- 118

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                         G          +++EY ++     +     +    A  L+C   T 
Sbjct: 119 --------------GINFD-----GAYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITT 159

Query: 190 VGAAWRTANVEVGSTVVIF----GLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
             A  R A+++   T+++     GLG++ + +   A+      IIGVDV  E  E
Sbjct: 160 YRAV-RKASLDPTKTLLVVGAGGGLGTMAVQI---AKAVSGATIIGVDVREEAVE 210

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score =  135 bits (341), Expect = 3e-38
 Identities = 55/229 (24%), Positives = 93/229 (40%), Gaps = 29/229 (12%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK--MKDFPAVFPRILG 75
           +AA+     EPL I++V +  P   EV +RI    +C +D+  WK          P ILG
Sbjct: 5   KAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILG 64

Query: 76  HEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
           HE  G +  VGE +  V +GD V+ +       C  CR  K N+C               
Sbjct: 65  HENAGTIVEVGE-LAKVKKGDNVVVYATWGDLTCRYCREGKFNICKN------------- 110

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA--- 192
               + + G+T +       FSEY ++  +  +    ++ P  A  L+   +T +GA   
Sbjct: 111 ----QIIPGQTTN-----GGFSEYMLVKSSRWLVKLNSLSPVEAAPLADAGTTSMGAIRQ 161

Query: 193 AWRTANVEVGSTVVIFGLGSIG-LAVAEGARLCGATRIIGVDVISEKFE 240
           A    +      V++ G+G +    +     L     I+G+    +  +
Sbjct: 162 ALPFISKFAEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRD 210

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score =  132 bits (334), Expect = 4e-37
 Identities = 58/230 (25%), Positives = 94/230 (40%), Gaps = 37/230 (16%)

Query: 18  RAAIATAPGEPLVIDEV-IVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGH 76
           ++ +    G  + + E  I +  +  EVRV+I  + LC SD+     K+    +P  LGH
Sbjct: 2   KSVVNDTDGI-VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIF-KNGAHYYPITLGH 59

Query: 77  EAIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           E  G +++VG  VD +  GD    +P     C  C  C     + C+ + F  S    RD
Sbjct: 60  EFSGYIDAVGSGVDDLHPGDAVACVPLLP--CFTCPECLKGFYSQCAKYDFIGS---RRD 114

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVG 191
                    G           F+EY V+   +V  +   +P         ++ G+     
Sbjct: 115 ---------G----------GFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGL----- 150

Query: 192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
            A+  A       V+I G G+IGL   + A   GA  +  +D+ SEK  +
Sbjct: 151 HAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLAL 200

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score =  131 bits (333), Expect = 5e-37
 Identities = 58/235 (24%), Positives = 84/235 (35%), Gaps = 43/235 (18%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRIL 74
           RA    AP E L + +  V  P   E+ VR+   S+C +D+  WK           P + 
Sbjct: 2   RALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVT 61

Query: 75  GHEAIGVVESVGENVDGVVEGDVVI--PHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           GHE  GVVE+VG  V     GD V    H +  C  C  CR+   ++C            
Sbjct: 62  GHEFSGVVEAVGPGVRRPQVGDHVSLESHIV--CHACPACRTGNYHVC------------ 107

Query: 133 RDQTSRFKDLRGETIHHFVSVS---SFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGV 186
                   + +       + V     F+EY V+   +       +P   A +       V
Sbjct: 108 -------LNTQ------ILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAV 154

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
                      +   G +V+I G G IGL  A   R  GA  I+  D    +   
Sbjct: 155 -----HTVYAGSGVSGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAF 204

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score =  124 bits (314), Expect = 4e-34
 Identities = 57/235 (24%), Positives = 94/235 (40%), Gaps = 44/235 (18%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF---PRIL 74
            A + T PG    + EV V  P   EV ++++ TS+C +D+  ++  ++       P+I+
Sbjct: 6   VAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIM 65

Query: 75  GHEAIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           GHE  G V  +G  V+G+  GD   V  H +  C +C  CR  + ++C            
Sbjct: 66  GHEVAGEVVEIGPGVEGIEVGDYVSVETHIV--CGKCYACRRGQYHVCQN---------- 113

Query: 133 RDQTSRFKDLRGETIHHFVSVS---SFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGV 186
                               V     F+EY V+   ++ K   ++PP  A L   L   V
Sbjct: 114 ---------------TKIFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAV 158

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
                          G +V+I G G +GL     A+  GA  +I  +    + E+
Sbjct: 159 D----TVLAG--PISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRREL 207

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score =  124 bits (314), Expect = 4e-34
 Identities = 57/237 (24%), Positives = 93/237 (39%), Gaps = 33/237 (13%)

Query: 11  AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK---MKDFP 67
           A       + +   PG+ L ++   +  P  +EV +R+    +C SDV +W+   + +F 
Sbjct: 2   AAAKPNNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFI 60

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
              P +LGHEA G VE VG +V  +  GD V     A       C+  + NL  +  F  
Sbjct: 61  VKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCA 120

Query: 128 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSC 184
           +P  P D                        +   + A   K+   V      L   LS 
Sbjct: 121 TP--PDDGN-------------------LCRFYKHNAAFCYKLPDNVTFEEGALIEPLSV 159

Query: 185 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
           G+      A R   V +G  V++ G G IG+     A+  GA +++  D+ + +   
Sbjct: 160 GI-----HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSK 211

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score =  121 bits (307), Expect = 4e-33
 Identities = 61/230 (26%), Positives = 95/230 (41%), Gaps = 34/230 (14%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRIL 74
            +A+     + L +++  +  P   EV +++    +C SDV +++   + DF    P ++
Sbjct: 6   LSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVI 64

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           GHEA G V  VG+NV  + +GD V       C  C  C+  K NLC    F  +P  P D
Sbjct: 65  GHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATP--PDD 122

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVG 191
                                 + Y V       K+   V      L   LS GV     
Sbjct: 123 GN-------------------LARYYVHAADFCHKLPDNVSLEEGALLEPLSVGV----- 158

Query: 192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
            A R A V++G+TV++ G G IGL     A+  GA  ++       + E+
Sbjct: 159 HACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTARSPRRLEV 207

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score =  118 bits (297), Expect = 1e-31
 Identities = 53/232 (22%), Positives = 84/232 (36%), Gaps = 37/232 (15%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRIL 74
           +  +  +   P +      +     EV V +  T +C SDV FWK   +         +L
Sbjct: 17  QHDLWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVL 76

Query: 75  GHEAIGVVESVGENVDGVVEGD-VVI-PHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           GHE+ G V +V  +V  +  GD V I P  +  C  C  C + + N C    F  +P +P
Sbjct: 77  GHESAGEVIAVHPSVKSIKVGDRVAIEPQVI--CNACEPCLTGRYNGCERVDFLSTPPVP 134

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTG 189
                      G              Y         K+   +      +   LS  +   
Sbjct: 135 -----------G----------LLRRYVNHPAVWCHKI-GNMSYENGAMLEPLSVAL--- 169

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
             A  + A V +G  V+I G G IGL     A+  GA  ++  D+   + + 
Sbjct: 170 --AGLQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKF 219

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score =  116 bits (292), Expect = 6e-31
 Identities = 45/240 (18%), Positives = 76/240 (31%), Gaps = 39/240 (16%)

Query: 18  RAAIATAPGEPLVIDEV-IVDPPNSHEVRVRIICTSLCHSDV-----TFWKMKDFPAVFP 71
           +A I   P   + + +V      +  ++++R I   +C +D                   
Sbjct: 2   KAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDF 61

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
            +LGHEAIGVVE   E+  G  +GD+V+P     C  C  C   + + C    F  +   
Sbjct: 62  LVLGHEAIGVVE---ESYHGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIH 118

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL--LSCGV--- 186
             D         G             E+   D  ++VK+  ++         L+      
Sbjct: 119 KMD---------G----------FMREWWYDDPKYLVKIPKSIEDIGILAQPLADIEKSI 159

Query: 187 ------STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
                    V              V++ G G IG+      R  G    +       + E
Sbjct: 160 EEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVE 219

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score =  114 bits (288), Expect = 2e-30
 Identities = 66/232 (28%), Positives = 96/232 (41%), Gaps = 40/232 (17%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPA--VFPRILG 75
           +AA+  A G PL IDEV V  P   +V+V+I  + +CH+D+      D+P     P I G
Sbjct: 4   KAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAAD-GDWPVKPTLPFIPG 62

Query: 76  HEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           HE +G V +VG  V  V EGD V +P   + C  C  C      LC            + 
Sbjct: 63  HEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLC-----------EKQ 111

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAA 193
           Q +      G +++       + EY V D  +V  +   V       + C GV+      
Sbjct: 112 QNT------GYSVN-----GGYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTV--YKG 158

Query: 194 WRTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVISEKFE 240
            +  +   G  VVI G+G +G      A A G       R+  VD+   K  
Sbjct: 159 LKVTDTRPGQWVVISGIGGLGHVAVQYARAMGL------RVAAVDIDDAKLN 204

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score =  112 bits (283), Expect = 9e-30
 Identities = 66/232 (28%), Positives = 97/232 (41%), Gaps = 40/232 (17%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP--AVFPRILG 75
           +AA+     EPL I EV     +  EV VRI    +CH+D+      D+P     P I G
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAH-GDWPVKPKLPLIPG 60

Query: 76  HEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           HE +G+VE VG  V  +  GD V IP   + C  C  C S +  LC              
Sbjct: 61  HEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLC-----------EHQ 109

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAA 193
           + +      G ++        ++EY      +VVK+   +    A  + C GV+T    A
Sbjct: 110 KNA------GYSVD-----GGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTT--YKA 156

Query: 194 WRTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVISEKFE 240
            +    + G  V I+G+G +G      A A G        ++ VD+  EK E
Sbjct: 157 LKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL------NVVAVDIGDEKLE 202

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score =  112 bits (283), Expect = 1e-29
 Identities = 39/227 (17%), Positives = 70/227 (30%), Gaps = 31/227 (13%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRIL 74
           +A       +  V+ E     P S E  VR +   +C +D                  +L
Sbjct: 2   KAIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVL 61

Query: 75  GHEAIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           GHEA+GVV  V  N   + EGD  V                  + ++     +     + 
Sbjct: 62  GHEAVGVV--VDPNDTELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVG 119

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL--LSCGV-STG 189
                      G            SE+      ++V++  +       +  +S    +  
Sbjct: 120 AH---------G----------YMSEFFTSPEKYLVRIPRSQAELGFLIEPISITEKALE 160

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL--CGATRIIGVDV 234
              A R+A     S+  + G GS+GL      ++   G   +  +  
Sbjct: 161 HAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGR 207

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score =  111 bits (279), Expect = 7e-29
 Identities = 46/266 (17%), Positives = 77/266 (28%), Gaps = 60/266 (22%)

Query: 5   KPSNKTAGKPIQCRAAIATAPGEPLVIDEVIV-DPPNSHEVRVRIICTSLCHSDVTFWK- 62
           K   K     +    +      E + ++EV         E+ +++    +C SDV   + 
Sbjct: 19  KLGPKDIEGKLTWLGSKVWRYPE-VRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQT 77

Query: 63  ------MKDFPAVFPRILGHEAIGVVESVGENV------DGVVEGD--VVIPHFLADCTE 108
                 +      FP  LGHE  GVV   G              G+           C  
Sbjct: 78  DEEGYILYPGLTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLW--CGH 135

Query: 109 CVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVS---SFSEYTVLDIA 165
           C  C     N C                            + +  +   +F+EY  +D  
Sbjct: 136 CRPCAEGFPNHCEN-------------------------LNELGFNVDGAFAEYVKVDAK 170

Query: 166 HVVKV-------DPTVPPNRACL---LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGL 215
           +   +       +         L    S   +       R   +  G  VVI G G IGL
Sbjct: 171 YAWSLRELEGVYEGDRLFLAGSLVEPTSVAYN---AVIVRGGGIRPGDNVVILGGGPIGL 227

Query: 216 AVAEGARLCGATRIIGVDVISEKFEI 241
           A     +  GA+++I  +    +  +
Sbjct: 228 AAVAILKHAGASKVILSEPSEVRRNL 253

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score =  108 bits (272), Expect = 5e-28
 Identities = 59/237 (24%), Positives = 88/237 (37%), Gaps = 41/237 (17%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP--AVFP 71
           P   +  I       L   ++ V  P ++E+ + +  + +CH+D+  W   D+P     P
Sbjct: 3   PETQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWH-GDWPLPVKLP 61

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
            + GHE  GVV  +GENV G   GD   I      C  C  C     + C          
Sbjct: 62  LVGGHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNC---------- 111

Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTG 189
            P    S      G T        SF +Y   D      +       +   + C G++  
Sbjct: 112 -PHADLS------GYTHD-----GSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITV- 158

Query: 190 VGAAWRTANVEVGSTVVIF----GLGSIG--LAVAEGARLCGATRIIGVDVISEKFE 240
              A ++AN+  G  V I     GLGS+    A A G       R++G+D    K E
Sbjct: 159 -YKALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGY------RVLGIDGGEGKEE 208

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score =  104 bits (262), Expect = 1e-26
 Identities = 50/224 (22%), Positives = 76/224 (33%), Gaps = 35/224 (15%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +     + G+ +   E     P   +  VR +  + C SD+              ILGHE
Sbjct: 2   KGFAMLSIGK-VGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGERHNMILGHE 60

Query: 78  AIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
           A+G V  VG  V     GD VV+P  +         +                       
Sbjct: 61  AVGEVVEVGSEVKDFKPGDRVVVP-AITPDWRTSEVQRGYHQHSG--------------- 104

Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHV-------VKVDPTVPPNRACLLSCGVSTG 189
                +        V    F E+      HV         +   +P   A ++   ++TG
Sbjct: 105 ----GMLAGWKFSNVKDGVFGEF-----FHVNDADMNLAHLPKEIPLEAAVMIPDMMTTG 155

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 233
              A   AN+++G TV + G+G +GL    GA   GA RI  V 
Sbjct: 156 FHGA-ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVG 198

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score = 89.3 bits (222), Expect = 6e-21
 Identities = 55/209 (26%), Positives = 81/209 (38%), Gaps = 24/209 (11%)

Query: 37  DPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96
                H V ++++ T++C SD    +     A    +LGHE  G V   G +V+ +  GD
Sbjct: 29  GKKIEHGVILKVVSTNICGSDQHMVR-GRTTAQVGLVLGHEITGEVIEKGRDVENLQIGD 87

Query: 97  -VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVS- 154
            V +P F   C  C  C+     +C                +R     G         + 
Sbjct: 88  LVSVP-FNVACGRCRSCKEMHTGVCL-----------TVNPARAGGAYGYV--DMGDWTG 133

Query: 155 SFSEYTVLDIAHV--VKVDPTVPPNRAC----LLSCGVSTGVGAAWRTANVEVGSTVVIF 208
             +EY ++  A    +K+               LS  + TG   A  TA V  GSTV + 
Sbjct: 134 GQAEYVLVPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGA-VTAGVGPGSTVYVA 192

Query: 209 GLGSIGLAVAEGARLCGATRIIGVDVISE 237
           G G +GLA A  ARL GA  +I  D+   
Sbjct: 193 GAGPVGLAAAASARLLGAAVVIVGDLNPA 221

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score = 88.4 bits (220), Expect = 1e-20
 Identities = 59/218 (27%), Positives = 91/218 (41%), Gaps = 34/218 (15%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFPAVFPRIL 74
           RA +  A G P  L + ++ V  P   EVRVR+   +L H DV   K +       P +L
Sbjct: 2   RAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVL 61

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           G +  GVV++VG  V+G   GD V+ +    C  C  C + + NLC  +           
Sbjct: 62  GADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRY----------- 110

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
                  + GE  H      +++EY VL  A++      +    A  +     T    AW
Sbjct: 111 ------QILGEHRH-----GTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLT----AW 155

Query: 195 R----TANVEVGSTVVIFGLGS-IGLAVAEGARLCGAT 227
           +       V  G  V++   GS + +A  + A+L GA 
Sbjct: 156 QMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGAR 193

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score = 88.1 bits (219), Expect = 2e-20
 Identities = 57/234 (24%), Positives = 94/234 (40%), Gaps = 30/234 (12%)

Query: 18  RAAIATAPGEPLVIDEV----IVDP--PNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFP 71
           ++ +     + L ++ V    +        H V ++++ T++C SD   ++   F     
Sbjct: 4   KSVVYHGTRD-LRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYR-GRFIVPKG 61

Query: 72  RILGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
            +LGHE  G V   G +V+ +  GD V +P F   C  C  C+  + ++C       +  
Sbjct: 62  HVLGHEITGEVVEKGSDVELMDIGDLVSVP-FNVACGRCRNCKEARSDVCEN-----NLV 115

Query: 131 MPRDQTSRFKDLRGETIHHF-------VSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS 183
            P      F    G  +  +       V V  +++Y +L      K           L+S
Sbjct: 116 NPDADLGAF----GFDLKGWSGGQAEYVLV-PYADYMLLKFGD--KEQAMEKIKDLTLIS 168

Query: 184 CGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 237
             + TG      +A V+ GS V I G G +G   A GARL GA  +I  D   E
Sbjct: 169 DILPTGFHGC-VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPE 221

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score = 80.6 bits (199), Expect = 1e-17
 Identities = 41/247 (16%), Positives = 78/247 (31%), Gaps = 54/247 (21%)

Query: 12  GKPIQCRAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDV---------- 58
               +  A + T   +P   + +D+V V      E  V ++ +S+ ++ V          
Sbjct: 38  KDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLST 97

Query: 59  --------TFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECV 110
                       +     +   ++G +  GVV   G  V+    GD V+ H L+   E  
Sbjct: 98  FGFLERYGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESS 157

Query: 111 GCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV 170
              +             +   P  +   F+   G            +E  ++    ++  
Sbjct: 158 DGHND------------TMLDPEQRIWGFETNFG----------GLAEIALVKSNQLMPK 195

Query: 171 DPTVPPNRACLLSCGVSTGVGAAWR------TANVEVGSTVVIFGLGS-IGLAVAEGARL 223
              +    A       ST    A+R       A ++ G  V+I+G    +G    + A  
Sbjct: 196 PDHLSWEEAAAPGLVNST----AYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALA 251

Query: 224 CGATRII 230
            GA  I 
Sbjct: 252 GGANPIC 258

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score = 79.5 bits (196), Expect = 2e-17
 Identities = 39/230 (16%), Positives = 68/230 (29%), Gaps = 51/230 (22%)

Query: 25  PGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDV------------------TFWKMKDF 66
             + L + EV +      EV V ++ +S+ ++ V                          
Sbjct: 46  VRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQGGWATR 105

Query: 67  PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
                 +LG +  GVV   G  V     GD VI H      E        G L       
Sbjct: 106 HDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVD-EQEPATHGDGMLG------ 158

Query: 127 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
                     +  +    ET          +EY V+  + ++     +    A +     
Sbjct: 159 ----------TEQRAWGFETNF-----GGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCA 203

Query: 187 STGVGAAWR------TANVEVGSTVVIFGLGS-IGLAVAEGARLCGATRI 229
            T    A+R       A ++ G  V+I+G    +G    +  +  G   +
Sbjct: 204 GT----AYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPV 249

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score = 78.0 bits (193), Expect = 5e-17
 Identities = 46/220 (20%), Positives = 72/220 (32%), Gaps = 40/220 (18%)

Query: 20  AIATAPG--EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFPRIL 74
             +T       L + E  V     H++ VR +  SL + D     ++        FP + 
Sbjct: 30  EWSTETVAPHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDK--LVLETGMGLDLAFPFVP 87

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
             +  GVVE+VG++V     GD VI  F     + +   + +                  
Sbjct: 88  ASDMSGVVEAVGKSVTRFRPGDRVISTFAPGWLDGLRPGTGRTPAYET------LGGAHP 141

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
                                 SEY VL     V    ++    A  L C   T    AW
Sbjct: 142 GV-------------------LSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLT----AW 178

Query: 195 R----TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRII 230
                  ++  G  VV+ G G + L   + A+  GA  I+
Sbjct: 179 FALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIV 218

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 74.4 bits (183), Expect = 1e-15
 Identities = 42/230 (18%), Positives = 67/230 (29%), Gaps = 57/230 (24%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRI 73
           P Q  A       E  V +          +V VR+   ++  SD     M+   A     
Sbjct: 9   PPQQTALTVNDHDEVTVWNAAPCPMLPRDQVYVRVEAVAINPSD---TSMRGQFATPWAF 65

Query: 74  LGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR 133
           LG +  G V +VG +V  +  GD V                           ++ P  P 
Sbjct: 66  LGTDYAGTVVAVGSDVTHIQVGDRVY----------------------GAQNEMCPRTPD 103

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST----- 188
                                +FS+YTV       K+   +   +A  L  G+ST     
Sbjct: 104 Q-------------------GAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAM 144

Query: 189 -------GVGAAWRTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRII 230
                     +A +         V+++G   +      +  RL G   I 
Sbjct: 145 KLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYIPIA 194

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score = 74.2 bits (183), Expect = 1e-15
 Identities = 47/224 (20%), Positives = 78/224 (34%), Gaps = 37/224 (16%)

Query: 13  KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPR 72
            P++     A      L             +VR +++   +CHSD+   K     +++P 
Sbjct: 13  HPVKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPL 72

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVVIPHFLAD-CTECVGCRSKKGNLCSAFPFKISPWM 131
           + GHE +G V  VG  V  V  GD V    L   C  C  C +   N C           
Sbjct: 73  VPGHEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPKMIL------ 126

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVST-- 188
               T       G   +       +S + V +  ++++    +P +    L C G++   
Sbjct: 127 ----TYASIYHDGTITY-----GGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVYS 177

Query: 189 -----GVGAAWRTANVEVGSTVVIFGLGSIG-----LAVAEGAR 222
                G+           G  + I GLG +G      A A G++
Sbjct: 178 PLKYFGLDEP--------GKHIGIVGLGGLGHVAVKFAKAFGSK 213

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score = 73.4 bits (181), Expect = 2e-15
 Identities = 49/224 (21%), Positives = 86/224 (38%), Gaps = 30/224 (13%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
                ++ +A  A +  +PL   ++    P  ++V++ I    +CHSD+   + +    V
Sbjct: 16  YKKAGLKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTV 75

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKIS 128
           +P + GHE +G V +VG+ V+    GD+V +   +  C  C  C     N C        
Sbjct: 76  YPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTG--- 132

Query: 129 PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV-DPTVPPNRACLLSC-GV 186
                  T                   +S+  V+   +V+++  P         L C G+
Sbjct: 133 -------TYNSPTPDEPGHTL----GGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGI 181

Query: 187 STGVGAAW---RTANVEVGSTVVIFGLGSIG-----LAVAEGAR 222
           +T     +   R      G  V + G+G +G     LA A GA 
Sbjct: 182 TT-----YSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAH 220

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 72.3 bits (178), Expect = 5e-15
 Identities = 39/224 (17%), Positives = 71/224 (31%), Gaps = 53/224 (23%)

Query: 14  PIQCRAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-DFPAV 69
           P + RA +    G+P   + +  + +      +VRV+++   +  SD+   +        
Sbjct: 24  PARVRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPE 83

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P + G+E +  V +VG NV G+  GD VI              +  G            
Sbjct: 84  LPAVGGNEGVAQVVAVGSNVTGLKPGDWVI-----------PANAGLG------------ 120

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                                    ++    V     +++V   +P   A  L     T 
Sbjct: 121 -------------------------TWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTA 155

Query: 190 VGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV 232
                    ++ G +V+       +G AV + A   G   I  V
Sbjct: 156 YRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVV 199

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score = 70.7 bits (174), Expect = 2e-14
 Identities = 50/224 (22%), Positives = 79/224 (35%), Gaps = 37/224 (16%)

Query: 13  KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPR 72
              +     A  P   L      +      +V +RIIC  +CH+D+   K     + +P 
Sbjct: 6   AERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYPM 65

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
           + GHE +G V  VG +V     GD+V +   +  C  C  C       C    +      
Sbjct: 66  VPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIW------ 119

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVST-- 188
               +     + G+          F++ TV+    VVK+   +   +A  L C GV+   
Sbjct: 120 ----SYNDVYINGQPTQ-----GGFAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYS 170

Query: 189 -----GVGAAWRTANVEVGSTVVIFGLGSIG-----LAVAEGAR 222
                G+           G    I GLG +G     +A A G  
Sbjct: 171 PLSHFGLKQP--------GLRGGILGLGGVGHMGVKIAKAMGHH 206

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score = 69.5 bits (171), Expect = 5e-14
 Identities = 50/218 (22%), Positives = 84/218 (38%), Gaps = 28/218 (12%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRI 73
            +Q +     +  E     +         +V + I+   +CHSD+     +    ++P I
Sbjct: 2   RVQSKGFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMI 61

Query: 74  LGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
            GHE  G+++ VG+ V     GDVV +  F+  C  C  C+  +   C+   F       
Sbjct: 62  PGHEIAGIIKEVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYD---- 117

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVG 191
                       E          +S   V+D  +V+ VD   P  +   L C G++T   
Sbjct: 118 ----CLDSFHDNEPHM-----GGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITT--- 165

Query: 192 AAW---RTANVEVGSTVVIFGLGSIG-----LAVAEGA 221
             +   + + V  G+ V + G G +G      AVA GA
Sbjct: 166 --YSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGA 201

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 65.5 bits (160), Expect = 1e-12
 Identities = 37/246 (15%), Positives = 65/246 (26%), Gaps = 77/246 (31%)

Query: 15  IQCRAAIATAPGEP-----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF--------- 60
           I  +A + T  GEP         E+  D    +EV V+ + + +  SD+           
Sbjct: 2   ITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKP 61

Query: 61  -WKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNL 119
                          G+E +  V  VG NV  +  GD VIP  +   T            
Sbjct: 62  AKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGT------------ 109

Query: 120 CSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD-------- 171
                                               +  + + +    +K+         
Sbjct: 110 ------------------------------------WRTHALGNDDDFIKLPNPAQSKAN 133

Query: 172 ---PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF--GLGSIGLAVAEGARLCGA 226
                +  N+   +S    T          +  G    I   G  ++G   ++  +L   
Sbjct: 134 GKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF 193

Query: 227 TRIIGV 232
              I V
Sbjct: 194 -NSISV 198

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score = 63.0 bits (154), Expect = 7e-12
 Identities = 37/220 (16%), Positives = 70/220 (31%), Gaps = 55/220 (25%)

Query: 18  RAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFPAVFPRI 73
           +       G P   L ++   ++P   +EV VR++   +  SD+             P I
Sbjct: 6   KLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNI 65

Query: 74  LGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR 133
            G+E +G+VE+VG  V   + G  V+P                                 
Sbjct: 66  PGYEGVGIVENVGAFVSRELIGKRVLP--------------------------------- 92

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAA 193
                                ++ EY       VV +  ++    A  +     T     
Sbjct: 93  ----------------LRGEGTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTC 136

Query: 194 WRTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGV 232
             T N++    +++     +IG   A+ +++    R+I V
Sbjct: 137 TETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAV 175

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score = 59.1 bits (144), Expect = 1e-10
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 7/89 (7%)

Query: 18 RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDV-----TFWKMKDFPAVF 70
          +A      G P  L + +        +++ +++   SL   D      + +  K      
Sbjct: 8  KAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNL 67

Query: 71 PRILGHEAIGVVESVGENVDGVVEGDVVI 99
          P  LG++  G V  +G +V+ V  GD V+
Sbjct: 68 PSGLGYDFSGEVIELGSDVNNVNIGDKVM 96

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score = 58.3 bits (142), Expect = 3e-10
 Identities = 48/218 (22%), Positives = 77/218 (35%), Gaps = 39/218 (17%)

Query: 19  AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF----WKMKDFPAVFPRIL 74
           A  +    +     +    P   H++ ++I    +C SD+      W     P V     
Sbjct: 11  AIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLV-V--- 66

Query: 75  GHEAIGVVESVGENVD-GVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           GHE +G V  +G   + G+  G  V +   +  C EC  C++     C+ F         
Sbjct: 67  GHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVT------- 119

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVG 191
              T       G      VS   ++ Y  +    VV +   +P + A  L C G++    
Sbjct: 120 ---TYSQPYEDGY-----VSQGGYANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTV--- 168

Query: 192 AAW---RTANVEVGSTVVIFGLGSIG-----LAVAEGA 221
             +          G  V I GLG IG     ++ A GA
Sbjct: 169 --YSPLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGA 204

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score = 57.2 bits (139), Expect = 7e-10
 Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 8/86 (9%)

Query: 18 RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-----MKDFPAVFPR 72
           AA+      P V+ ++    P   +V V+I  +     D    K             P 
Sbjct: 9  IAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLD---AKIRAGEAPHAQQPLPA 65

Query: 73 ILGHEAIGVVESVGENVDGVVEGDVV 98
          ILG +  G V +VG  VD    GD V
Sbjct: 66 ILGMDLAGTVVAVGPEVDSFRVGDAV 91

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 55.3 bits (134), Expect = 3e-09
 Identities = 49/232 (21%), Positives = 73/232 (31%), Gaps = 57/232 (24%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF---WKMKDFPAVFPR 72
            AA+    G P   V +EV V  P   +VR+R     +   D                P 
Sbjct: 3   MAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPI 62

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           ++G EA  VVE VG  V     G+ V       C   +G                     
Sbjct: 63  VVGFEAAAVVEEVGPGVTDFTVGERV-----CTCLPPLG--------------------- 96

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS--TGV 190
                                 ++S+  +     ++KV   +  +   L    +   T  
Sbjct: 97  ----------------------AYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQ 134

Query: 191 GAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
               +T  V+ G  V+I    G +G  +   AR  GAT +IG     EK E 
Sbjct: 135 YLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGAT-VIGTVSTEEKAET 185

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score = 54.9 bits (133), Expect = 4e-09
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 3/84 (3%)

Query: 18 RAAIATAPG---EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
                A       + ++ V +    + ++ V+     +   D  F K          + 
Sbjct: 3  EQHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINWSNGHVP 62

Query: 75 GHEAIGVVESVGENVDGVVEGDVV 98
          G +  GV+  VG  VD  + G  V
Sbjct: 63 GVDGAGVIVKVGAKVDSKMLGRRV 86

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 54.9 bits (133), Expect = 4e-09
 Identities = 36/236 (15%), Positives = 63/236 (26%), Gaps = 70/236 (29%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF----WKMKDFPAVFP 71
                   G P  L   E     P  +E++V      +   D       +     P+   
Sbjct: 3   TRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPS--- 59

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
             LG EA G+V  VG  V  +  GD V           +G                    
Sbjct: 60  -GLGTEAAGIVSKVGSGVKHIKAGDRV-----VYAQSALG-------------------- 93

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRA--CLLSCGVSTG 189
                                  ++S    +       +   +   +A    L      G
Sbjct: 94  -----------------------AYSSVHNIIADKAAILPAAISFEQAAASFLK-----G 125

Query: 190 VGA---AWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
           +       +T  ++     +     G +GL   + A+  GA  +IG    ++K + 
Sbjct: 126 LTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAK-LIGTVGTAQKAQS 180

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score = 54.6 bits (132), Expect = 5e-09
 Identities = 36/241 (14%), Positives = 68/241 (28%), Gaps = 68/241 (28%)

Query: 1   MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF 60
           +  E    ++  + +              +  +  V  P   ++ VR     +  SD+ +
Sbjct: 13  LGTENLYFQSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINY 72

Query: 61  WKMKD---FPAVFPRILGHEAIGVVESVGENVDG-VVEGDVVIPHFLADCTECVGCRSKK 116
                        P  +G E IG V ++G +       G  V                  
Sbjct: 73  --SAGRYDPSVKPPFDIGFEGIGEVVALGLSASARYTVGQAVA----------------- 113

Query: 117 GNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP 176
                                            +++  SF+EYTV+  +    V P+V P
Sbjct: 114 ---------------------------------YMAPGSFAEYTVVPASIATPV-PSVKP 139

Query: 177 NRACLLSCGVSTGVGAAW----RTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIG 231
               LL  G +     A+        +  G  V++    G  G    + ++      +IG
Sbjct: 140 EYLTLLVSGTT-----AYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIG 193

Query: 232 V 232
            
Sbjct: 194 T 194

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 54.1 bits (131), Expect = 8e-09
 Identities = 49/243 (20%), Positives = 73/243 (30%), Gaps = 84/243 (34%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF----WKMKDFPAVFP 71
           +    +  G P  L   +   + P    V VR     L   D  +    +     P+   
Sbjct: 3   KRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPS--- 59

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
             LG E  GVVE+VG+ V     GD V     A  T  +G                    
Sbjct: 60  -GLGAEGAGVVEAVGDEVTRFKVGDRV-----AYGTGPLG-------------------- 93

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG 191
                                  ++SE  VL  A++VK+      +        VS    
Sbjct: 94  -----------------------AYSEVHVLPEANLVKL-----AD-------SVSFEQA 118

Query: 192 AAW------------RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK 238
           AA             +T  V+ G  ++     G +G    + A+  GA  +IG     EK
Sbjct: 119 AALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAK-LIGTVSSPEK 177

Query: 239 FEI 241
              
Sbjct: 178 AAH 180

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 42/231 (18%), Positives = 80/231 (34%), Gaps = 59/231 (25%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILG 75
           +  +    G    +  ++  V   +  E+ ++   T + + +  F K   +P   P +LG
Sbjct: 10  KVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGI-YPCEKPYVLG 68

Query: 76  HEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
            EA G V + G+ V     GD V                                     
Sbjct: 69  REASGTVVAKGKGVTNFEVGDQVA------------------------------------ 92

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYT-VLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA-- 192
                         ++S S+F++Y+ +     V+K+          L + G+   + A  
Sbjct: 93  --------------YISNSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALS 138

Query: 193 -AWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
                 +V+ G  V++F   G +GL + +  ++ GA   I V    EK +I
Sbjct: 139 FTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAH-TIAVASTDEKLKI 188

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 51.9 bits (125), Expect = 4e-08
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 9/87 (10%)

Query: 18 RAAIATAPG-----EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-FPAVFP 71
          +A     P             + +  P  HE+ V+I   S+   D    K +    +  P
Sbjct: 4  KAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVD---TKQRLMDVSKAP 60

Query: 72 RILGHEAIGVVESVGENVDGVVEGDVV 98
          R+LG +AIGVVESVG  V    +GD+V
Sbjct: 61 RVLGFDAIGVVESVGNEVTMFNQGDIV 87

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 18  RAAIATAPG-----EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPR 72
           +A     P        L+  E+    P  H++ V +   S+   D    +         +
Sbjct: 24  KAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWK 83

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVV 98
           ++G++A G+V +VG +V     GD V
Sbjct: 84  VIGYDAAGIVSAVGPDVTLFRPGDEV 109

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 42/226 (18%), Positives = 73/226 (32%), Gaps = 54/226 (23%)

Query: 11  AGKPIQCRAAIATAPGEP--LVIDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWKMK-DF 66
           A      RA      G P  L +   I  P P  H+V +++    +   +          
Sbjct: 24  ATGQKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSR 83

Query: 67  PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
             + P   G +  GV+E+VG+N     +GD V        +  +      G         
Sbjct: 84  KPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVF------TSSTIS-----G--------- 123

Query: 127 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
                                        ++EY +     V K+   +   +   +    
Sbjct: 124 ----------------------------GYAEYALAADHTVYKLPEKLDFKQGAAIGIPY 155

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIG 231
            T   A   +A V+ G +V++ G    +GLA  + AR  G  +I+G
Sbjct: 156 FTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILG 200

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 25/103 (24%)

Query: 18  RAAIATAPGEP--LVIDEVIVDP--PNSHEVRVRIICTSLCHSDVTFWKM---------- 63
            A +    G+   L   + ++ P     +EV V++   S+   D     M          
Sbjct: 23  MAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPID---VNMRSGYGATALN 79

Query: 64  --------KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVV 98
                   K     FP  LG +  GVV   G +V     GD V
Sbjct: 80  MKRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEV 122

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 48.8 bits (117), Expect = 4e-07
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 18 RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFPAVFPRIL 74
          RA +    G    L +    +  P   E+++R+    L   D+   +   D P   P + 
Sbjct: 5  RAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVP 64

Query: 75 GHEAIGVVESVGENVDGVVEGDVVI 99
          G E  G+VE++G++V G   GD V+
Sbjct: 65 GFECSGIVEALGDSVKGYEIGDRVM 89

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 31/251 (12%), Positives = 60/251 (23%), Gaps = 88/251 (35%)

Query: 13  KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF------------ 60
             +Q R+ I ++    L +D +    P   EV +RI  + L  SD+              
Sbjct: 4   SALQLRSRIKSSGELELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKA 63

Query: 61  -----------------WKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFL 103
                             +           +G+E  GVV   G +          +    
Sbjct: 64  SGTAERPIVTARVPEGAMRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTV---- 119

Query: 104 ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLD 163
                                                          +  + +S+Y  + 
Sbjct: 120 ---------------------------------------------AAIGGAMYSQYRCIP 134

Query: 164 IAHVVKVDPTVPPNR-ACLLSCGVSTGVGAAW---RTANVEVGSTVVIFGLGS-IGLAVA 218
               + +     P   A      ++     A     T  +E  S +V     S +G  + 
Sbjct: 135 ADQCLVLPEGATPADGASSFVNPLT-----ALGMVETMRLEGHSALVHTAAASNLGQMLN 189

Query: 219 EGARLCGATRI 229
           +     G   +
Sbjct: 190 QICLKDGIKLV 200

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 3/85 (3%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-DFPAVFPRIL 74
           R     + G P  +VI +  +      EV VR     +   D+   +     P     IL
Sbjct: 30  RFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPIL 89

Query: 75  GHEAIGVVESVGENVDGVVEGDVVI 99
           G E  G +  VG  V G   GD V 
Sbjct: 90  GLELSGEIVGVGPGVSGYAVGDKVC 114

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 46.0 bits (110), Expect = 4e-06
 Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 4/97 (4%)

Query: 6   PSNKTAGKPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM 63
                   P   +A  A +   P  LV  +V       + V V +    +C  D    K 
Sbjct: 11  TLEAQTQGPGSMKAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKG 70

Query: 64  K-DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVI 99
           +       P + G E  GVV S  E   G+  GD V+
Sbjct: 71  EYQLKMEPPFVPGIETAGVVRSAPE-GSGIKPGDRVM 106

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 2/93 (2%)

Query: 9   KTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-DFP 67
              G       +   A    L    + V  P   +V +++   S+  SDV F K +   P
Sbjct: 17  VGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQP 76

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVE-GDVVI 99
            V  R  G E +G + + G+        G  V 
Sbjct: 77  RVKGRPAGFEGVGTIVAGGDEPYAKSLVGKRVA 109

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 8e-05
 Identities = 28/208 (13%), Positives = 53/208 (25%), Gaps = 81/208 (38%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           ++ ++        ID +I+            +          FW +              
Sbjct: 43  KSILSKE-----EIDHIIMSKDA--VSGTLRL----------FWTLLSKQE--------- 76

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
                E V + V+ V+  +     FL                    P K     P   T 
Sbjct: 77  -----EMVQKFVEEVLRINY---KFLMS------------------PIKTEQRQPSMMTR 110

Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
            + + R      +     F++Y V  +   +K+       R  LL               
Sbjct: 111 MYIEQRDRL---YNDNQVFAKYNVSRLQPYLKL-------RQALL--------------- 145

Query: 198 NVEVGSTVVIFGLGSIG---LAVAEGAR 222
            +     V+I G+   G   +A  +   
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVA-LDVCL 172

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN 88
           LV +     P    EVR+ +    +   D     +  +P      LG E  GVV   G  
Sbjct: 226 LVDEPTATAPLGDGEVRIAMRAAGVNFRDA-LIALGMYPG--VASLGSEGAGVVVETGPG 282

Query: 89  VDGVVEGDVVI 99
           V G+  GD V+
Sbjct: 283 VTGLAPGDRVM 293

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFPAVFPRIL 74
            A     PG P  L + EV    P   EV +++  ++L  +D+   +   D P     IL
Sbjct: 24  LAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNIL 83

Query: 75  GHEAIGVVESVGENVDGVV-EGDVV 98
           G EA G V  +G    G    GD  
Sbjct: 84  GLEASGHVAELGPGCQGHWKIGDTA 108

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 233
           G  ++I+G G IG ++A  A   G   +IGV+
Sbjct: 137 GQQLLIYGTGQIGQSLAAKASALGM-HVIGVN 167

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	243
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	100.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	100.0
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	100.0
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	100.0
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	99.98
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	99.97
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	99.97
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	99.96
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.96
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	99.96
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.8
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.2
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.53
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.05
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.93
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	96.71
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	96.65
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	96.64
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	96.63
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	96.6
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	96.55
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	96.44
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	96.39
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	96.29
2b25_A	336	Hypothetical protein; structural genomics, methyl	96.2
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.06
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	95.94
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	95.53
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	95.37
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	95.36
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	95.26
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	95.22
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.18
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.16
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	95.05
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	94.83
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	94.82
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	94.82
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	94.79
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	94.78
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	94.75
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	94.68
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	94.67
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	94.62
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	94.6
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	94.56
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	94.53
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	94.47
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	94.46
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	94.43
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	94.42
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	94.37
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	94.37
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	94.35
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	94.34
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	94.33
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	94.29
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	94.27
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	94.19
4dqx_A	277	Probable oxidoreductase protein; structural genomi	94.16
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	94.15
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	94.14
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	94.09
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	94.09
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	94.08
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.08
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	94.05
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	93.99
3rih_A	293	Short chain dehydrogenase or reductase; structural	93.98
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	93.94
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	93.94
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	93.93
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	93.9
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	93.86
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	93.82
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	93.81
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	93.76
3cxt_A	291	Dehydrogenase with different specificities; rossma	93.73
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	93.7
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	93.68
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	93.65
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	93.62
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	93.54
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	93.52
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	93.48
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	93.44
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	93.42
1xhl_A	297	Short-chain dehydrogenase/reductase family member	93.36
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	93.25
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	93.05
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	93.04
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	92.83
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	92.81
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	92.81
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	92.79
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	92.75
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	92.73
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	92.71
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	92.7
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	92.68
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	92.55
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	92.51
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	92.44
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	92.35
3l07_A	285	Bifunctional protein fold; structural genomics, ID	92.32
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	92.28
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	92.25
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	92.21
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	92.16
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	92.14
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	92.09
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	92.09
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	92.02
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	91.95
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	91.88
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	91.87
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	91.82
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	91.72
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	91.71
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	91.68
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	91.65
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	91.62
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	91.59
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	91.5
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	91.5
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	91.44
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	91.35
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	91.3
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.17
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	91.16
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	91.11
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	91.11
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	90.96
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	90.93
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	90.9
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	90.87
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	90.85
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	90.8
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	90.78
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	90.77
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	90.73
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	90.71
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	90.57
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	90.56
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	90.54
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	90.47
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	90.47
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	90.45
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	90.44
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	90.4
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	90.34
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	90.33
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	90.1
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	90.07
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	90.06
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	90.06
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	90.03
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	90.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	89.94
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	89.63
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	89.61
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	89.6
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	89.59
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	89.56
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	89.42
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	89.27
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	89.21
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	89.18
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	89.1
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	89.07
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	89.05
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	89.05
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	89.01
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	89.01
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	89.01
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	88.89
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	88.88
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	88.86
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	88.78
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	88.76
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	88.73
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	88.73
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	88.67
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	88.54
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	88.5
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	88.47
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	88.44
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	88.43
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	88.38
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	88.27
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	88.24
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	88.22
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	88.15
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	88.11
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	88.07
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	88.03
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	88.03
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	87.95
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	87.95
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	87.81
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	87.68
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	87.66
2bry_A	497	NEDD9 interacting protein with calponin homology a	87.49
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	87.33
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	87.21
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	87.0
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	87.0
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	87.0
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	86.74
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	86.74
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	86.58
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	86.54
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	86.44
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	86.33
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	86.14
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	86.08
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	86.03
3on5_A	362	BH1974 protein; structural genomics, joint center	85.99
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	85.73
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	85.71
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	85.6
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	85.56
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	85.5
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	85.48
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	85.41
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	85.36
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	85.3
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	85.24
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	85.23
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	85.19
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	85.11
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	84.96
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	84.79
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	84.75
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	84.63
4f6c_A	427	AUSA reductase domain protein; thioester reductase	84.48
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	84.44
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	84.33
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	84.33
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	84.23
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	84.16
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	83.97
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	83.94
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	83.8
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	83.71
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	83.66
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	83.58
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	83.47
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	83.22
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	83.19
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	83.13
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	83.06
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	82.84
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	82.73
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	82.55
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	82.53
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	82.51
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	82.51
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	82.41
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	82.28
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	82.22
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	82.12
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	82.06
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	81.94
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	81.89
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	81.89
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	81.47
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	81.45
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	81.31
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	81.18
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	81.14
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	81.11
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	81.03
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	80.88
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	80.83
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	80.74
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	80.65
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	80.64
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	80.62
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	80.6
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	80.53
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	80.37
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	80.37
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	80.35
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	80.33
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	80.29
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	80.19
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	80.09
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	80.01

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=2.4e-45  Score=329.55  Aligned_cols=231  Identities=52%  Similarity=0.916  Sum_probs=204.4

Q ss_pred             CCCCceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCC
Q 026140           11 AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD   90 (243)
Q Consensus        11 ~~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~   90 (243)
                      .++|++|||++++++++++++++++.|+|+++||||||++++||++|+++++|..+...+|.++|||++|+|+++|++++
T Consensus         3 ~~~~~tmkA~v~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~v~   82 (378)
T 3uko_A            3 QGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT   82 (378)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             cccceeeEEEEEecCCCccEEEEecCCCCCCCeEEEEEEEeecCHHHHHHhcCCCCCCCCCccCCccceEEEEEeCCCCC
Confidence            45689999999999998899999999999999999999999999999999999877678999999999999999999999


Q ss_pred             ccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCceeecccccceeeeeEEeccCcEEE
Q 026140           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (243)
Q Consensus        91 ~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~  169 (243)
                      +|++||+|+..+..+|++|.+|+++.+++|+........|.. .+|..++. .+|...+++.+.|+|+||++++.+.+++
T Consensus        83 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~  161 (378)
T 3uko_A           83 EVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFS-VNGKPIYHFMGTSTFSQYTVVHDVSVAK  161 (378)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEE-ETTEEEBCCTTTCCSBSEEEEEGGGEEE
T ss_pred             cCCCCCEEEEecCCCCCCChhhhCcCcCcCcCcccccccccccccCccccc-cCCcccccccCCcceEeEEEechhheEE
Confidence            999999999999999999999999999999986543223322 23322222 2344555566668999999999999999


Q ss_pred             cCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       170 ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +|+++++++|+++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|++++
T Consensus       162 iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a  234 (378)
T 3uko_A          162 IDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETA  234 (378)
T ss_dssp             CCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHH
T ss_pred             CCCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence            9999999999999999999999888889999999999999999999999999999997899999999998865

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=1.7e-43  Score=316.84  Aligned_cols=230  Identities=44%  Similarity=0.781  Sum_probs=195.1

Q ss_pred             CCCCCceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCC
Q 026140           10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (243)
Q Consensus        10 ~~~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v   89 (243)
                      +.+.|++|||+++.++++++++++++.|+|+++||||||++++||++|++++.|.++ ..+|.++|||++|+|+++|++|
T Consensus         3 ~~~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~v   81 (373)
T 1p0f_A            3 TAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP-SKFPVILGHEAVGVVESIGAGV   81 (373)
T ss_dssp             CTTSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCCEEEEEEEECTTC
T ss_pred             ccCCcceeEEEEEEcCCCCeeEEEeeCCCCCCCeEEEEEeEEeecchhHHHhcCCCC-CCCCcccCcCceEEEEEECCCC
Confidence            445689999999999987799999999999999999999999999999999988765 4689999999999999999999


Q ss_pred             CccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEE
Q 026140           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (243)
Q Consensus        90 ~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~  169 (243)
                      ++|++||+|++.+..+|++|.+|+.+.+++|+........|...+|..++. ..|...+++...|+|+||++++.+++++
T Consensus        82 ~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~  160 (373)
T 1p0f_A           82 TCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAVAK  160 (373)
T ss_dssp             CSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEE-ETTEEEBCSTTTCCSBSEEEEETTSEEE
T ss_pred             CccCCCCEEEECCCCCCCCChhhcCCCcCcCcCCCcccccccccCCccccc-cCCcccccccCCccceeEEEEchhhEEE
Confidence            999999999999999999999999999999987653211132222211110 0111122222346999999999999999


Q ss_pred             cCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       170 ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +|++++++ ||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|++++
T Consensus       161 iP~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a  232 (373)
T 1p0f_A          161 IDPKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKA  232 (373)
T ss_dssp             ECTTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHH
T ss_pred             CCCCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH
Confidence            99999999 9999999999999887888999999999999999999999999999997899999999988765

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=2.2e-43  Score=316.24  Aligned_cols=230  Identities=44%  Similarity=0.783  Sum_probs=195.3

Q ss_pred             CCCCceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCC
Q 026140           11 AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD   90 (243)
Q Consensus        11 ~~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~   90 (243)
                      ..+|++|||+++.++++++++++++.|+|+++||||||++++||++|++++.|.++. .+|.++|||++|+|+++|++|+
T Consensus         3 ~~~~~~mkA~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~P~v~GhE~~G~V~~vG~~v~   81 (374)
T 2jhf_A            3 AGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT-PLPVIAGHEAAGIVESIGEGVT   81 (374)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-CSSBCCCCSEEEEEEEECTTCC
T ss_pred             CCCceeEEEEEEecCCCceEEEEccCCCCCCCeEEEEEeEEeechhhHHHHcCCCCC-CCCcccCcCceEEEEEECCCCC
Confidence            456799999999999877999999999999999999999999999999999987654 3899999999999999999999


Q ss_pred             ccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEc
Q 026140           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (243)
Q Consensus        91 ~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i  170 (243)
                      +|++||+|++.+..+|++|.+|+++.+++|+........|...+|..++. ..|...+++...|+|+||++++.++++++
T Consensus        82 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~i  160 (374)
T 2jhf_A           82 TVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKI  160 (374)
T ss_dssp             SCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEE-ETTEEEBCSTTTCCSBSEEEEEGGGEEEC
T ss_pred             CCCCCCEEEECCCCCCCCCccccCCCcCcCCCCccccccccccCCccccc-ccccccccccCCccCeeEEEEchHHeEEC
Confidence            99999999999999999999999999999987653211132222211110 01112222223469999999999999999


Q ss_pred             CCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       171 p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      |+++++++|+++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|++++
T Consensus       161 P~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~  232 (374)
T 2jhf_A          161 DAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKA  232 (374)
T ss_dssp             CTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH
T ss_pred             CCCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence            999999999999999999999887888999999999999999999999999999997899999999988764

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=7.4e-44  Score=319.05  Aligned_cols=230  Identities=47%  Similarity=0.813  Sum_probs=195.0

Q ss_pred             CCCceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCc
Q 026140           12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG   91 (243)
Q Consensus        12 ~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~   91 (243)
                      +.|++|||+++.++++++++++++.|+|+++||||||++++||++|++++.|.++...+|.++|||++|+|+++|++|++
T Consensus         2 ~~p~~mkA~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~   81 (373)
T 2fzw_A            2 NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVTK   81 (373)
T ss_dssp             CCCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             CCccceEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEEEEchhhHHHhcCCCCCCCCCccccccccEEEEEECCCCCC
Confidence            46789999999999877999999999999999999999999999999999987665578999999999999999999999


Q ss_pred             cCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcC
Q 026140           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (243)
Q Consensus        92 ~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip  171 (243)
                      |++||+|+..+..+|++|.+|+++.+++|++.......|...+|..++. ..|...+++...|+|+||++++.++++++|
T Consensus        82 ~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~iP  160 (373)
T 2fzw_A           82 LKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKID  160 (373)
T ss_dssp             CCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEE-ETTEEEBCCTTTCCSBSEEEEEGGGEEECC
T ss_pred             CCCCCEEEECCCCCCCCChHHcCcCcccCCCcccccccccccCCccccc-ccccccccccCCccceeEEEEchhheEECC
Confidence            9999999999999999999999999999986532100022112211110 011222222234699999999999999999


Q ss_pred             CCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++++++|+++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|++++
T Consensus       161 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~  231 (373)
T 2fzw_A          161 PLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARA  231 (373)
T ss_dssp             TTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHH
T ss_pred             CCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence            99999999999999999999887888999999999999999999999999999997899999999988765

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.5e-43  Score=315.86  Aligned_cols=231  Identities=45%  Similarity=0.782  Sum_probs=196.1

Q ss_pred             CCCCCceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhh-hhhCCCCCCCCCeeeecceeEEEEEeCCC
Q 026140           10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVT-FWKMKDFPAVFPRILGHEAIGVVESVGEN   88 (243)
Q Consensus        10 ~~~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~-~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~   88 (243)
                      +...|++|||+++.++++++++++++.|+|+++||||||.+++||++|++ ++.|.++ ..+|.++|||++|+|+++|++
T Consensus         2 ~~~~~~~mka~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~   80 (374)
T 1cdo_A            2 TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK-DGFPVVLGHEGAGIVESVGPG   80 (374)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT-TSCSEECCCCEEEEEEEECTT
T ss_pred             CCCCcceeEEEEEecCCCCeEEEEeeCCCCCCCEEEEEEeEEeechhhHHHHhCCCCC-CCCCcccCccceEEEEEECCC
Confidence            44668999999999998779999999999999999999999999999999 8888755 568999999999999999999


Q ss_pred             CCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEE
Q 026140           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV  168 (243)
Q Consensus        89 v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~  168 (243)
                      |++|++||+|++.+..+|++|.+|+.+.+++|+........|...+|..++. ..|...+++...|+|+||++++.++++
T Consensus        81 V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~  159 (374)
T 1cdo_A           81 VTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFT-CKGRKVLQFLGTSTFSQYTVVNQIAVA  159 (374)
T ss_dssp             CCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEE-ETTEEEEEGGGTCCSBSEEEEEGGGEE
T ss_pred             CccCCCCCEEEeCCCCCCCCChhhcCCCcCcCCCcccccccccccCCccccc-cCCcccccccCCccceeEEEEchhheE
Confidence            9999999999999999999999999999999987643211122222211110 111122222234699999999999999


Q ss_pred             EcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       169 ~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++|+++++++||++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|++++
T Consensus       160 ~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~  233 (374)
T 1cdo_A          160 KIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKA  233 (374)
T ss_dssp             ECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH
T ss_pred             ECCCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH
Confidence            99999999999999999999999887888999999999999999999999999999997899999999988765

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=2.3e-43  Score=316.27  Aligned_cols=230  Identities=45%  Similarity=0.779  Sum_probs=193.9

Q ss_pred             CCCCceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCC
Q 026140           11 AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD   90 (243)
Q Consensus        11 ~~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~   90 (243)
                      ...|++|||+++.+++.++++++++.|+|+++||||||++++||++|++++.|. +...+|.++|||++|+|+++|++|+
T Consensus         3 ~~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~-~~~~~P~v~GhE~~G~V~~vG~~v~   81 (376)
T 1e3i_A            3 QGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPK-KKALFPVVLGHECAGIVESVGPGVT   81 (376)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTT-SCCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             CCCChheeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEeEEeEchhhHHHhcCC-CCCCCCcccCccccEEEEEECCCCc
Confidence            456789999999999877999999999999999999999999999999999886 4456899999999999999999999


Q ss_pred             ccCCCCEEEeeccCCCCCCccccCCCCCCCCCCC----CCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCc
Q 026140           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFP----FKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH  166 (243)
Q Consensus        91 ~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~----~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~  166 (243)
                      +|++||+|++.+..+|++|.+|+.+.+++|+...    .....|...+|..++. ..|...+++...|+|+||++++.++
T Consensus        82 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~  160 (376)
T 1e3i_A           82 NFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEAN  160 (376)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEE-ETTEEEBCCTTTCCSBSEEEEEGGG
T ss_pred             cCCCCCEEEECCcCCCCCCccccCCCcccCcCcCccccccccccccccCccccc-cCCcccccccCCccceeEEEecccc
Confidence            9999999999999999999999999999998754    1000122212211110 0111122222336999999999999


Q ss_pred             EEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          167 VVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       167 ~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++++|+++++++|+++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|++++
T Consensus       161 ~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a  236 (376)
T 1e3i_A          161 LARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKA  236 (376)
T ss_dssp             EEECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH
T ss_pred             EEECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence            9999999999999999999999999887888999999999999999999999999999997899999999988765

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=8.2e-43  Score=309.67  Aligned_cols=214  Identities=21%  Similarity=0.310  Sum_probs=186.2

Q ss_pred             CceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccC
Q 026140           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVV   93 (243)
Q Consensus        14 ~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~   93 (243)
                      +|+|||+++.++++++++++++.|+|++|||||||++++||++|++++.|.++...+|.++|||++|+|+++|+++++|+
T Consensus         2 ~m~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~V~~vG~~v~~~~   81 (348)
T 3two_A            2 RVQSKGFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMIPGHEIAGIIKEVGKGVKKFK   81 (348)
T ss_dssp             CEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTSSSCCCSSBCCCCCEEEEEEEECTTCCSCC
T ss_pred             ceEEEEEEEccCCCCCeEEEeeCCCCCCCeEEEEEEEeeecccchhhhcCCCCCCCCCeecCcceeEEEEEECCCCCCCC
Confidence            47899999999988899999999999999999999999999999999999877678899999999999999999999999


Q ss_pred             CCCEEEeec-cCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCC
Q 026140           94 EGDVVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (243)
Q Consensus        94 ~Gd~Vv~~~-~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~  172 (243)
                      +||+|++.+ ..+|++|.+|+.+.+++|. ...   .+...+....    .+     ....|+|+||++++.++++++|+
T Consensus        82 vGdrV~~~~~~~~Cg~C~~C~~g~~~~c~-~~~---~~~~~~~~~~----~~-----~~~~G~~aey~~v~~~~~~~iP~  148 (348)
T 3two_A           82 IGDVVGVGCFVNSCKACKPCKEHQEQFCT-KVV---FTYDCLDSFH----DN-----EPHMGGYSNNIVVDENYVISVDK  148 (348)
T ss_dssp             TTCEEEECSEEECCSCSHHHHTTCGGGCT-TCE---ESSSSEEGGG----TT-----EECCCSSBSEEEEEGGGCEECCT
T ss_pred             CCCEEEEeCCcCCCCCChhHhCCCcccCc-ccc---cccccccccc----cC-----CcCCccccceEEechhhEEECCC
Confidence            999998765 4789999999999999998 322   1211110000    00     00115999999999999999999


Q ss_pred             CCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       173 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++++++||.+++.+.|||+++ ...++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|++++
T Consensus       149 ~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~  216 (348)
T 3two_A          149 NAPLEKVAPLLCAGITTYSPL-KFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDA  216 (348)
T ss_dssp             TSCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHH
T ss_pred             CCCHHHhhhhhhhHHHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence            999999999999999999976 56699999999999999999999999999999 999999999988765

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=6.4e-43  Score=311.83  Aligned_cols=218  Identities=27%  Similarity=0.409  Sum_probs=184.0

Q ss_pred             CCCCCCCCCCCCCCceeeeEEeccCCCCeEEEEEecCC-CCCCeEEEEEeeeecChhhhhhhhCCCC---CCCCCeeeec
Q 026140            1 MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGH   76 (243)
Q Consensus         1 ~~~~~~~~~~~~~~~~~ka~~~~~~~~~~~~~e~~~p~-~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~vlG~   76 (243)
                      |.++++-+.. ..+++|||+++++++.+++++++|.|+ |++|||||||++++||++|++++.|.++   ...+|.++||
T Consensus         1 ~~~~~~~~~~-~~~~~mka~~~~~~g~~l~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~   79 (359)
T 1h2b_A            1 MRIEQDFSQS-LGVERLKAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGH   79 (359)
T ss_dssp             -----------------CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCC
T ss_pred             Cchhhhhhhc-CChhhceEEEEecCCCCcEEEEccCCCCCCCCEEEEEEEEEEecccchHHHhCCCccccCCCCCeecCc
Confidence            4556665433 245789999999998669999999999 9999999999999999999999998764   3468999999


Q ss_pred             ceeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeeccccccee
Q 026140           77 EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSF  156 (243)
Q Consensus        77 e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~  156 (243)
                      |++|+|+++|+++++|++||+|+..+..+|++|.+|+.+.+++|+....   .|...+|                   +|
T Consensus        80 E~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~~~G-------------------~~  137 (359)
T 1h2b_A           80 ENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEF---PGLNIDG-------------------GF  137 (359)
T ss_dssp             CEEEEEEEECTTCCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBC---BTTTBCC-------------------SS
T ss_pred             CceEEEEEECCCCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCCCccc---cccCCCC-------------------cc
Confidence            9999999999999999999999999999999999999999999987653   3433334                   99


Q ss_pred             eeeEEeccCcEEEcCCCCChhhhc---ccchhhHhHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEE
Q 026140          157 SEYTVLDIAHVVKVDPTVPPNRAC---LLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIG  231 (243)
Q Consensus       157 ~~~~~v~~~~~~~ip~~~~~~~aa---~~~~~~~ta~~~l~~~-~~~~~g~~VlI~GaG~vG~~~v~la~~~-g~~~vi~  231 (243)
                      +||++++.++++++|+++++++|+   .+++.+.|||+++.+. .++++|++|||+|+|++|++++|+|+.+ |+ +|++
T Consensus       138 aey~~v~~~~~~~iP~~~~~~~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga-~Vi~  216 (359)
T 1h2b_A          138 AEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPA-TVIA  216 (359)
T ss_dssp             BSEEEECGGGEEECCTTCCHHHHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCC-EEEE
T ss_pred             cceEEechHhEEECCCCCCHHHHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEE
Confidence            999999999999999999999998   7888899999987554 8999999999999999999999999999 99 8999


Q ss_pred             EcCCchhhhcC
Q 026140          232 VDVISEKFEIG  242 (243)
Q Consensus       232 ~~~~~~~~~~~  242 (243)
                      ++++++|++++
T Consensus       217 ~~~~~~~~~~~  227 (359)
T 1h2b_A          217 LDVKEEKLKLA  227 (359)
T ss_dssp             EESSHHHHHHH
T ss_pred             EeCCHHHHHHH
Confidence            99999988765

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.5e-42  Score=308.06  Aligned_cols=227  Identities=29%  Similarity=0.533  Sum_probs=189.3

Q ss_pred             CceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccC
Q 026140           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVV   93 (243)
Q Consensus        14 ~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~   93 (243)
                      +++|||++++++++++++++++.|+|+++||||||++++||++|++++.|.++ ..+|.++|||++|+|+++|+++++|+
T Consensus         4 ~~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~v~~~~   82 (371)
T 1f8f_A            4 LKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYP-VPLPAVLGHEGSGIIEAIGPNVTELQ   82 (371)
T ss_dssp             CEEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCEEEEEEEEECTTCCSCC
T ss_pred             cccceEEEEcCCCCCeEEEEecCCCCCCCEEEEEEEEeecCchhHHHHcCCCC-CCCCcccCcccceEEEEeCCCCCCCC
Confidence            46899999999987799999999999999999999999999999999998765 46799999999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcee-ecccccceeeeeEEeccCcEEEcCC
Q 026140           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI-HHFVSVSSFSEYTVLDIAHVVKVDP  172 (243)
Q Consensus        94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~-~~~~~~g~~~~~~~v~~~~~~~ip~  172 (243)
                      +||+|++.+ .+|++|.+|+.+.+++|+........|+..+|..++....|... .++...|+|+||++++.++++++|+
T Consensus        83 ~GdrV~~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~~g~~~~~~~~~~G~~aey~~v~~~~~~~iP~  161 (371)
T 1f8f_A           83 VGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTK  161 (371)
T ss_dssp             TTCEEEECC-CCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEECT
T ss_pred             CCCEEEecC-CCCCCChhhhCcCccccccccccccccccccccccccccCCccccccccCCccccCeEEechhheEECCC
Confidence            999999999 99999999999999999865311111221122111100001000 1112236999999999999999999


Q ss_pred             CCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       173 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++++++|+++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|++++
T Consensus       162 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a  231 (371)
T 1f8f_A          162 DVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELA  231 (371)
T ss_dssp             TSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH
T ss_pred             CCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH
Confidence            9999999999999999999887888999999999999999999999999999997799999999988765

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=2.3e-42  Score=305.80  Aligned_cols=203  Identities=30%  Similarity=0.442  Sum_probs=187.2

Q ss_pred             eeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccCC
Q 026140           16 QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVE   94 (243)
Q Consensus        16 ~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~~   94 (243)
                      +|||+++++++.++++++++.|+|++|||||||++++||++|++++.|.++. ..+|.++|||++|+|+++|+++++|++
T Consensus         2 ~MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~~v   81 (340)
T 3s2e_A            2 MMKAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGYVSAVGSGVSRVKE   81 (340)
T ss_dssp             EEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECSSCCSCCT
T ss_pred             ceEEEEEecCCCCCEEEEccCCCCCCCeEEEEEEEeccCHHHHHHHcCCCCCCCCCCcccCCcceEEEEEECCCCCcCCC
Confidence            4999999999888999999999999999999999999999999999998754 468999999999999999999999999


Q ss_pred             CCEE-EeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140           95 GDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (243)
Q Consensus        95 Gd~V-v~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~  173 (243)
                      ||+| +..+..+|+.|.+|+.+++++|++...   .|...+|                   +|+||++++.++++++|++
T Consensus        82 GdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~  139 (340)
T 3s2e_A           82 GDRVGVPWLYSACGYCEHCLQGWETLCEKQQN---TGYSVNG-------------------GYGEYVVADPNYVGLLPDK  139 (340)
T ss_dssp             TCEEEEESEEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEECTTTSEECCTT
T ss_pred             CCEEEecCCCCCCCCChHHhCcCcccCccccc---cCCCCCC-------------------cceeEEEechHHEEECCCC
Confidence            9999 567788999999999999999988764   4444444                   9999999999999999999


Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++++|+.+++.+.|+|+++ +..++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|++++
T Consensus       140 ~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~  206 (340)
T 3s2e_A          140 VGFVEIAPILCAGVTVYKGL-KVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLA  206 (340)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HTTTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCHHHhhcccchhHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence            99999999999999999976 77899999999999999999999999999999 999999999998765

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=4.1e-42  Score=307.94  Aligned_cols=208  Identities=23%  Similarity=0.363  Sum_probs=187.2

Q ss_pred             CCCCCCceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCC
Q 026140            9 KTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN   88 (243)
Q Consensus         9 ~~~~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~   88 (243)
                      .....|++|||+++++++. +++++++.|+|++|||||||++++||++|++++.|.++ ..+|.++|||++|+|+++|++
T Consensus        16 ~~~~~p~~mkA~v~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~-~~~p~v~G~e~~G~V~~vG~~   93 (370)
T 4ej6_A           16 ENLYFQSMMKAVRLESVGN-ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFP-STPPVTLGHEFCGIVVEAGSA   93 (370)
T ss_dssp             -----CCEEEEEEEEETTE-EEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSEECCCSEEEEEEEECTT
T ss_pred             cccccchheEEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEEeecHHHHHHHcCCCC-CCCCeecCcceEEEEEEECCC
Confidence            4466788999999999986 99999999999999999999999999999999998764 478999999999999999999


Q ss_pred             CCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEE
Q 026140           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV  168 (243)
Q Consensus        89 v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~  168 (243)
                      +++|++||+|+..+..+|+.|.+|+.+.+++|+....   .|...+|                   +|+||++++.+.++
T Consensus        94 v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~  151 (370)
T 4ej6_A           94 VRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRA---IGIHRDG-------------------GFAEYVLVPRKQAF  151 (370)
T ss_dssp             CCSSCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGEE
T ss_pred             CCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCccc---cCCCCCC-------------------cceEEEEEchhhEE
Confidence            9999999999999999999999999999999987664   3444444                   99999999999999


Q ss_pred             EcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       169 ~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++|+++++++|+ +..++.|+|+++ +..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|++++
T Consensus       152 ~~P~~~~~~~aa-l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a  223 (370)
T 4ej6_A          152 EIPLTLDPVHGA-FCEPLACCLHGV-DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLA  223 (370)
T ss_dssp             EECTTSCTTGGG-GHHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHH
T ss_pred             ECCCCCCHHHHh-hhhHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            999999999998 556999999976 789999999999999999999999999999998899999999988765

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=2e-41  Score=302.21  Aligned_cols=208  Identities=22%  Similarity=0.305  Sum_probs=182.9

Q ss_pred             CceeeeEEeccCCCCeEEEE--EecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCC-
Q 026140           14 PIQCRAAIATAPGEPLVIDE--VIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD-   90 (243)
Q Consensus        14 ~~~~ka~~~~~~~~~~~~~e--~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~-   90 (243)
                      |.+|||+++.+++.++++++  ++.|+|+++||||||++++||++|++++.|.++...+|.++|||++|+|+++|++++ 
T Consensus         4 p~~mka~~~~~~~~~l~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~GhE~~G~V~~vG~~v~~   83 (360)
T 1piw_A            4 PEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKSNS   83 (360)
T ss_dssp             TTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECTTCCS
T ss_pred             ChheEEEEEecCCCCeeEEeccccCCCCCCCeEEEEEEEeccchhhHHHhcCCCCCCCCCcccCcCceEEEEEeCCCCCC
Confidence            56799999999986689999  999999999999999999999999999998765556899999999999999999999 


Q ss_pred             ccCCCCEEEee-ccCCCCCCccccCCCCCCCCCC--CCCC--CCCCCCCCCccccccCCceeecccccceeeeeEEeccC
Q 026140           91 GVVEGDVVIPH-FLADCTECVGCRSKKGNLCSAF--PFKI--SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA  165 (243)
Q Consensus        91 ~~~~Gd~Vv~~-~~~~~~~c~~c~~~~~~~~~~~--~~~~--~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~  165 (243)
                      +|++||+|++. ...+|++|.+|+.+.+++|+..  .+..  ..|...+                   |+|+||++++.+
T Consensus        84 ~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~-------------------G~~aey~~v~~~  144 (360)
T 1piw_A           84 GLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQ-------------------GGYANYVRVHEH  144 (360)
T ss_dssp             SCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCC-------------------CSSBSEEEEEGG
T ss_pred             CCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhccccccCCCccCC-------------------CcceeEEEEchh
Confidence            99999999554 4578999999999999999865  1100  0021222                   499999999999


Q ss_pred             cEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          166 HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       166 ~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++++|+++++++||.+++.+.|||+++. .+++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|++++
T Consensus       145 ~~~~iP~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~  219 (360)
T 1piw_A          145 FVVPIPENIPSHLAAPLLCGGLTVYSPLV-RNGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDA  219 (360)
T ss_dssp             GEEECCTTSCHHHHGGGGTHHHHHHHHHH-HTTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHH
T ss_pred             heEECCCCCCHHHhhhhhhhHHHHHHHHH-HcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence            99999999999999999999999999865 4889999999999999999999999999999 899999999887764

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=2.7e-41  Score=301.39  Aligned_cols=204  Identities=25%  Similarity=0.363  Sum_probs=183.9

Q ss_pred             CCceeeeEEeccCCCCeEEEEEecC--------CCCCCeEEEEEeeeecChhhhhhhhCCC---CCCCCCeeeecceeEE
Q 026140           13 KPIQCRAAIATAPGEPLVIDEVIVD--------PPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFPRILGHEAIGV   81 (243)
Q Consensus        13 ~~~~~ka~~~~~~~~~~~~~e~~~p--------~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~~~~p~vlG~e~~G~   81 (243)
                      ++++|||+++..++. ++++++|.|        +|++|||||||++++||++|++++.+..   ....+|.++|||++|+
T Consensus         5 ~~~~mka~~~~~~~~-l~~~~~~~P~~~~~~~~~~~~~eVlVkv~a~gi~~~D~~~~~~~~~~~~~~~~p~v~G~E~~G~   83 (363)
T 3m6i_A            5 ASKTNIGVFTNPQHD-LWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAGE   83 (363)
T ss_dssp             CCSCCEEEEECTTCC-EEEEECSSCHHHHHHTCSCCTTEEEEEEEEEECCHHHHHHHHHSBSSSCBCCSCEECCCEEEEE
T ss_pred             CcccceeEEEeCCCc-EEEEEecCCccccccCCCcCCCeEEEEEeEEeecHhhHHHHcCCCCCCccCCCCcccCcceEEE
Confidence            568899999998887 999999999        9999999999999999999999987432   2246799999999999


Q ss_pred             EEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCceeecccccceeeeeE
Q 026140           82 VESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYT  160 (243)
Q Consensus        82 Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~~~~~  160 (243)
                      |+++|+++++|++||+|++.+..+|++|.+|+.+.+++|+....   .|.. .+                   |+|+||+
T Consensus        84 V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~---~g~~~~~-------------------G~~aey~  141 (363)
T 3m6i_A           84 VIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDF---LSTPPVP-------------------GLLRRYV  141 (363)
T ss_dssp             EEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---TTSTTSC-------------------CSCBSEE
T ss_pred             EEEECCCCCCCCCCCEEEEecccCCCCCHHHHCcCcccCCCccc---cCCCCCC-------------------ccceeEE
Confidence            99999999999999999999999999999999999999988764   3332 23                   4999999


Q ss_pred             EeccCcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          161 VLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       161 ~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      +++.++++++|+ +++++||++. ++.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|++
T Consensus       142 ~v~~~~~~~iP~-~s~~~aa~~~-~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~  218 (363)
T 3m6i_A          142 NHPAVWCHKIGN-MSYENGAMLE-PLSVALAGL-QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLK  218 (363)
T ss_dssp             EEEGGGEEECTT-CCHHHHHHHH-HHHHHHHHH-HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHH
T ss_pred             EEehhhEEECCC-CCHHHHHhhh-HHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            999999999999 9999999874 889999986 7889999999999999999999999999999955999999999987


Q ss_pred             cC
Q 026140          241 IG  242 (243)
Q Consensus       241 ~~  242 (243)
                      ++
T Consensus       219 ~a  220 (363)
T 3m6i_A          219 FA  220 (363)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=3.7e-41  Score=299.04  Aligned_cols=203  Identities=27%  Similarity=0.431  Sum_probs=171.4

Q ss_pred             ceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhC-CCC--CCCCCeeeecceeEEEEEeCCCCCc
Q 026140           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM-KDF--PAVFPRILGHEAIGVVESVGENVDG   91 (243)
Q Consensus        15 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g-~~~--~~~~p~vlG~e~~G~Vv~vG~~v~~   91 (243)
                      ++|||+++.+++..+++++++.|+|+++||||||++++||++|++++.| .++  ...+|.++|||++|+|+++|+++++
T Consensus         3 ~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~   82 (348)
T 2d8a_A            3 EKMVAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVEG   82 (348)
T ss_dssp             CEEEEEEECSSSSSCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCTTHHHHCCSSEECCCEEEEEEEEECTTCCS
T ss_pred             CcceEEEEECCCCCEEEEECCCCCCCcCEEEEEEeEEEecHHHHHHHcCCCCCcccCCCCCccCccceEEEEEECCCCCc
Confidence            5699999999984599999999999999999999999999999999988 432  2468999999999999999999999


Q ss_pred             cCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcC
Q 026140           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (243)
Q Consensus        92 ~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip  171 (243)
                      |++||+|+..+..+|++|.+|+++.+++|+....   .|...+|                   +|+||++++.++++++|
T Consensus        83 ~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP  140 (348)
T 2d8a_A           83 IEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKI---FGVDTDG-------------------VFAEYAVVPAQNIWKNP  140 (348)
T ss_dssp             CCTTCEEEECCEECCSCCC------------CEE---TTTSSCC-------------------SSBSEEEEEGGGEEECC
T ss_pred             CCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCe---ecCCCCC-------------------cCcceEEeChHHeEECC
Confidence            9999999999999999999999999999987653   3333334                   99999999999999999


Q ss_pred             CCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++++++|+++. ++.|||+++ +..++ +|++|||+|+|++|++++|+|+.+|+.+|++++++++|++++
T Consensus       141 ~~~~~~~aa~~~-~~~ta~~~l-~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~  208 (348)
T 2d8a_A          141 KSIPPEYATLQE-PLGNAVDTV-LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELA  208 (348)
T ss_dssp             TTSCHHHHTTHH-HHHHHHHHH-TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHH
T ss_pred             CCCCHHHHHhhh-HHHHHHHHH-HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            999999999886 888999986 77888 999999999999999999999999997899999999887764

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=3e-41  Score=299.08  Aligned_cols=203  Identities=30%  Similarity=0.439  Sum_probs=183.1

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC---CCCCCeeeecceeEEEEEeCCCCCccC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDGVV   93 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~vlG~e~~G~Vv~vG~~v~~~~   93 (243)
                      |||+++.++++++++++++.|+|++|||||||++++||++|++++.|.++   ...+|.++|||++|+|+++|+++++|+
T Consensus         1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   80 (343)
T 2dq4_A            1 MRALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQ   80 (343)
T ss_dssp             CEEEEECSSSSSCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTCHHHHHHCCSSEECCCEEEEEEEEECTTCCSSC
T ss_pred             CeEEEEeCCCCcEEEEeccCCCCCCCEEEEEEEEEeechhhHHHHcCCCCccccCCCCCcCCccceEEEEEECCCCCcCC
Confidence            79999999987799999999999999999999999999999999988654   346899999999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (243)
Q Consensus        94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~  173 (243)
                      +||+|+..+..+|++|.+|+.+.+++|++...   .|...+                   |+|+||++++.++++++|++
T Consensus        81 vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~-------------------G~~aey~~v~~~~~~~iP~~  138 (343)
T 2dq4_A           81 VGDHVSLESHIVCHACPACRTGNYHVCLNTQI---LGVDRD-------------------GGFAEYVVVPAENAWVNPKD  138 (343)
T ss_dssp             TTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---BTTTBC-------------------CSSBSEEEEEGGGEEEECTT
T ss_pred             CCCEEEECCCCCCCCChhhhCcCcccCCCcce---ecCCCC-------------------CcceeEEEEchHHeEECCCC
Confidence            99999999999999999999999999987653   233333                   49999999999999999999


Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcCC
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE  243 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~~  243 (243)
                      +++++|+++. ++.|+|+++.+..++ +|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++
T Consensus       139 ~~~~~aa~~~-~~~ta~~~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~  206 (343)
T 2dq4_A          139 LPFEVAAILE-PFGNAVHTVYAGSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFAR  206 (343)
T ss_dssp             SCHHHHTTHH-HHHHHHHHHHSTTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGT
T ss_pred             CCHHHHHhhh-HHHHHHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence            9999999874 788999987547888 9999999999999999999999999977999999999988764

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=9.8e-41  Score=295.51  Aligned_cols=200  Identities=28%  Similarity=0.469  Sum_probs=182.0

Q ss_pred             eeeEEeccCCCCeEEEEEecCC-CCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~-~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G   95 (243)
                      |||+++.+++. ++++|+|.|+ |++|||||||.+++||++|++.+.+..+. .+|.++|||++|+|+++|++|++|++|
T Consensus         1 MkAvv~~~~g~-l~v~e~p~P~~~~~~eVlVkv~a~gi~~sD~~~~~g~~~~-~~P~i~G~E~~G~V~~vG~~V~~~~~G   78 (346)
T 4a2c_A            1 MKSVVNDTDGI-VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGAH-YYPITLGHEFSGYIDAVGSGVDDLHPG   78 (346)
T ss_dssp             CEEEEECSSSC-EEEEECCCCCCCSTTEEEEEEEEEECCTTHHHHHHSSCSS-SSSBCCCCEEEEEEEEECTTCCSCCTT
T ss_pred             CCEEEEecCCC-EEEEEEeCCCCCCcCEEEEEEEEEEECHHHHHHHcCCCCC-CCCccccEEEEEEEEEECCCcccccCC
Confidence            89999999997 9999999998 57999999999999999999999887554 689999999999999999999999999


Q ss_pred             CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCC
Q 026140           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (243)
Q Consensus        96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~  175 (243)
                      |+|++.+...|+.|.+|..+.+++|.....   .|...+|                   +|+||++++.++++++|++++
T Consensus        79 drV~~~~~~~~g~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~l~  136 (346)
T 4a2c_A           79 DAVACVPLLPCFTCPECLKGFYSQCAKYDF---IGSRRDG-------------------GFAEYIVVKRKNVFALPTDMP  136 (346)
T ss_dssp             CEEEECCEECCSCSHHHHTTCGGGCSSCEE---BTTTBCC-------------------SSBSEEEEEGGGEEECCTTSC
T ss_pred             CeEEeeeccCCCCcccccCCccccCCCccc---ccCCCCc-------------------ccccccccchheEEECCCCCC
Confidence            999999999999999999999999988765   4555555                   999999999999999999999


Q ss_pred             hhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++||++. .+.++++ +....+.++|++|||+|+|++|++++|+|+++|+..+++++++++|++++
T Consensus       137 ~~~aa~l~-~~~~~~~-~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a  201 (346)
T 4a2c_A          137 IEDGAFIE-PITVGLH-AFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALA  201 (346)
T ss_dssp             GGGGGGHH-HHHHHHH-HHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred             HHHHHhch-HHHHHHH-HHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHH
Confidence            99999876 5555555 56889999999999999999999999999999997788999999998775

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.3e-40  Score=298.18  Aligned_cols=212  Identities=21%  Similarity=0.309  Sum_probs=181.9

Q ss_pred             CCCCCCceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCC
Q 026140            9 KTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN   88 (243)
Q Consensus         9 ~~~~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~   88 (243)
                      ......|+|||+.+.++++.++++++|.|+|+++||||||++++||++|++++.|.++...+|.++|||++|+|+++|++
T Consensus        15 ~~~~~~~~~~a~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~   94 (369)
T 1uuf_A           15 LYKKAGLKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQ   94 (369)
T ss_dssp             --------CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEECTT
T ss_pred             hhHhcCceEEEEEEcCCCCCcEEEEecCCCCCCCeEEEEEEEEeecHHHHHHhcCCCCCCCCCeecccCceEEEEEECCC
Confidence            33456788999999988777999999999999999999999999999999999987655568999999999999999999


Q ss_pred             CCccCCCCEEEeecc-CCCCCCccccCCCCCCCCCCCCCCCC------CCCCCCCccccccCCceeecccccceeeeeEE
Q 026140           89 VDGVVEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISP------WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTV  161 (243)
Q Consensus        89 v~~~~~Gd~Vv~~~~-~~~~~c~~c~~~~~~~~~~~~~~~~~------g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~  161 (243)
                      |++|++||+|++.+. ..|++|.+|+++.+++|++.... +.      |...+                   |+|+||++
T Consensus        95 V~~~~vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~-~~~~~~~~g~~~~-------------------G~~aeyv~  154 (369)
T 1uuf_A           95 VEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGT-YNSPTPDEPGHTL-------------------GGYSQQIV  154 (369)
T ss_dssp             CCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEET-TTSBCSSTTSBCC-------------------CSSBSEEE
T ss_pred             CCCCCCCCEEEEccCCCCCCCCcccCCCCcccCcchhcc-cccccccCCCCCC-------------------CcccceEE
Confidence            999999999988765 46999999999999999875211 11      21122                   49999999


Q ss_pred             eccCcEEEcCCC-CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          162 LDIAHVVKVDPT-VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       162 v~~~~~~~ip~~-~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ++.++++++|++ +++++||.+++.+.|||+++. ..++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|++
T Consensus       155 v~~~~~~~~P~~~ls~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~  232 (369)
T 1uuf_A          155 VHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLR-HWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKRE  232 (369)
T ss_dssp             EEGGGCEECCSCGGGHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHH
T ss_pred             EcchhEEECCCCCCCHHHhhhhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            999999999999 999999999999999999865 4689999999999999999999999999999 7999999998887


Q ss_pred             cC
Q 026140          241 IG  242 (243)
Q Consensus       241 ~~  242 (243)
                      ++
T Consensus       233 ~a  234 (369)
T 1uuf_A          233 AA  234 (369)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-40  Score=294.11  Aligned_cols=206  Identities=25%  Similarity=0.385  Sum_probs=184.1

Q ss_pred             CCceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCc
Q 026140           13 KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDG   91 (243)
Q Consensus        13 ~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~   91 (243)
                      +|.+|||+++.+++.++++++++.|+|+++||||||++++||++|++++.|.++. ..+|.++|||++|+|+++|+++++
T Consensus         2 ~p~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~   81 (347)
T 2hcy_A            2 IPETQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENVKG   81 (347)
T ss_dssp             CCSEEEEEEESSTTCCCEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSEECCCEEEEEEEEECTTCCS
T ss_pred             CCcccEEEEEeCCCCCCEEEEeeCCCCCCCEEEEEEEEEEechhHHHHhcCCCCCCCCCCcccCccceEEEEEECCCCCC
Confidence            4678999999999866999999999999999999999999999999999987642 468999999999999999999999


Q ss_pred             cCCCCEEEeecc-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEc
Q 026140           92 VVEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (243)
Q Consensus        92 ~~~Gd~Vv~~~~-~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i  170 (243)
                      |++||+|++.+. .+|+.|.+|+.+.+++|+....   .|...+|                   +|+||++++.++++++
T Consensus        82 ~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~i  139 (347)
T 2hcy_A           82 WKIGDYAGIKWLNGSCMACEYCELGNESNCPHADL---SGYTHDG-------------------SFQQYATADAVQAAHI  139 (347)
T ss_dssp             CCTTCEEEECSEEECCSSSTTTTTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEETTTSEEE
T ss_pred             CcCCCEEEEecCCCCCCCChhhhCCCcccCccccc---cccCCCC-------------------cceeEEEeccccEEEC
Confidence            999999987664 3599999999999999987653   3333344                   9999999999999999


Q ss_pred             CCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       171 p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      |+++++++|+.+++.+.|||+++ ...++++|++|||+|+ |++|++++++++.+|+ +|+++++++++++++
T Consensus       140 P~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~  210 (347)
T 2hcy_A          140 PQGTDLAQVAPILCAGITVYKAL-KSANLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELF  210 (347)
T ss_dssp             CTTCCHHHHGGGGTHHHHHHHHH-HTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHH
T ss_pred             CCCCCHHHHHHHhhhHHHHHHHH-HhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHH
Confidence            99999999999999999999976 4568999999999998 9999999999999999 999999988877653

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=1e-40  Score=296.58  Aligned_cols=204  Identities=24%  Similarity=0.305  Sum_probs=182.5

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhh-hhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVT-FWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~-~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G   95 (243)
                      |||++++++++ +++++++.|+|++|||||||++++||++|++ ++.|.++. .+|.++|||++|+|+++|+++++|++|
T Consensus         1 MkA~~~~~~~~-~~~~e~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~-~~p~v~G~E~~G~V~~vG~~v~~~~vG   78 (352)
T 3fpc_A            1 MKGFAMLSIGK-VGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGE-RHNMILGHEAVGEVVEVGSEVKDFKPG   78 (352)
T ss_dssp             CEEEEEEETTE-EEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTCC-CSSEECCCEEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEccCCC-ceEEeCCCCCCCCCeEEEEeCEEeEcccchHHHhCCCCCC-CCCcccCCcceEEEEEECCCCCcCCCC
Confidence            79999999998 9999999999999999999999999999999 55776553 689999999999999999999999999


Q ss_pred             CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccC--cEEEcCCC
Q 026140           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT  173 (243)
Q Consensus        96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~--~~~~ip~~  173 (243)
                      |+|++.+..+|+.|.+|+.++.++|.........+...+                   |+|+||++++..  .++++|++
T Consensus        79 drV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~~~~-------------------G~~aey~~v~~~~~~~~~iP~~  139 (352)
T 3fpc_A           79 DRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKD-------------------GVFGEFFHVNDADMNLAHLPKE  139 (352)
T ss_dssp             CEEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTTTBC-------------------CSSBSCEEESSHHHHCEECCTT
T ss_pred             CEEEEccccCCCCchhhcCCCcCCccccccccccccCCC-------------------CcccceEEeccccCeEEECCCC
Confidence            999999999999999999999999876542111122223                   499999999976  99999999


Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++++|++++.++.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|++++
T Consensus       140 ~~~~~aa~~~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~  207 (352)
T 3fpc_A          140 IPLEAAVMIPDMMTTGFHGA-ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIA  207 (352)
T ss_dssp             SCHHHHTTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHH
T ss_pred             CCHHHHhhccchhHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH
Confidence            99999999988999999976 789999999999999999999999999999997899999999988765

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=9.9e-41  Score=295.81  Aligned_cols=206  Identities=28%  Similarity=0.421  Sum_probs=182.3

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC--CCCCCeeeecceeEEEEEeCCCCCccCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF--PAVFPRILGHEAIGVVESVGENVDGVVE   94 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~--~~~~p~vlG~e~~G~Vv~vG~~v~~~~~   94 (243)
                      |||++++++++++++++++.|+|++|||||||++++||++|+++++|.++  ...+|.++|||++|+|+++|+++++|++
T Consensus         1 MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~v   80 (345)
T 3jv7_A            1 MKAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGFGV   80 (345)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTTCCSCSSEECCSEEEEEEEEECTTCCSCCT
T ss_pred             CeEEEEcCCCCceEEEEecCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCccCCCCCcccCcccEEEEEEECCCCCCCCC
Confidence            79999999998899999999999999999999999999999999998754  2568999999999999999999999999


Q ss_pred             CCEEEeeccCCCCCCccccCCCCCCCCCCCCCC--CCCCCCCCCccccccCCceeecccccceeeeeEEec-cCcEEEcC
Q 026140           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI--SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLD-IAHVVKVD  171 (243)
Q Consensus        95 Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~--~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~-~~~~~~ip  171 (243)
                      ||+|+..+..+|+.|.+|+.+.+++|+......  ..|...+                   |+|+||++++ .+.++++|
T Consensus        81 GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~~~~-------------------G~~aey~~v~~~~~~~~~p  141 (345)
T 3jv7_A           81 GDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSP-------------------GSMAEYMIVDSARHLVPIG  141 (345)
T ss_dssp             TCEEEECCSCCCSSSHHHHTTCGGGCSSHHHHTCCCBTTTBC-------------------CSSBSEEEESCGGGEEECT
T ss_pred             CCEEEEecCCCCCCChHHHCcCcCcCccccccccccCCcCCC-------------------ceeeEEEEecchhceEeCC
Confidence            999999999999999999999999994322100  0122222                   4999999999 99999999


Q ss_pred             CCCChhhhcccchhhHhHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          172 PTVPPNRACLLSCGVSTGVGAAWR-TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~-~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      + +++++|+.+++++.|||+++.+ ..++++|++|||+|+|++|++++|+|+.+|..+|++++++++|++++
T Consensus       142 ~-~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~  212 (345)
T 3jv7_A          142 D-LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALA  212 (345)
T ss_dssp             T-CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHH
T ss_pred             C-CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH
Confidence            9 9999999999999999998765 34899999999999999999999999999544999999999998865

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=2.5e-40  Score=293.30  Aligned_cols=202  Identities=27%  Similarity=0.440  Sum_probs=177.8

Q ss_pred             ceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC--CCCCCeeeecceeEEEEEeCCCCCcc
Q 026140           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF--PAVFPRILGHEAIGVVESVGENVDGV   92 (243)
Q Consensus        15 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~--~~~~p~vlG~e~~G~Vv~vG~~v~~~   92 (243)
                      .+|||+++.++++++++++++.|+|+++||||||++++||++|++++.|.++  ...+|.++|||++|+|+++|++ ++|
T Consensus         2 ~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~E~~G~V~~vG~~-~~~   80 (344)
T 2h6e_A            2 VKSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGEL-AKV   80 (344)
T ss_dssp             EEEEBCEECSCCC-----EEEECCCCTTCEEEEEEEEECCHHHHHHHTTSCCCTTCCSSEECCCCEEEEEEEECTT-CCC
T ss_pred             ceeEEEEEecCCCCCeEEEeeCCCCCCCEEEEEEEEEEechhhHHHHcCCCcccCCCCCccccccceEEEEEECCC-CCC
Confidence            4699999999986699999999999999999999999999999999998765  3468999999999999999999 999


Q ss_pred             CCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEec-cCcEEEcC
Q 026140           93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLD-IAHVVKVD  171 (243)
Q Consensus        93 ~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~-~~~~~~ip  171 (243)
                      ++||+|+..+..+|++|.+|+.+.+++|+....   .|...+                   |+|+||++++ .++++++ 
T Consensus        81 ~~GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~~~-------------------G~~aey~~v~~~~~~~~i-  137 (344)
T 2h6e_A           81 KKGDNVVVYATWGDLTCRYCREGKFNICKNQII---PGQTTN-------------------GGFSEYMLVKSSRWLVKL-  137 (344)
T ss_dssp             CTTCEEEECSCBCCSCSTTGGGTCGGGCTTCBC---BTTTBC-------------------CSSBSEEEESCGGGEEEE-
T ss_pred             CCCCEEEECCCCCCCCChhhhCCCcccCCCccc---cccccC-------------------CcceeeEEecCcccEEEe-
Confidence            999999988889999999999999999987643   333333                   3999999999 9999999 


Q ss_pred             CCCChhhhcccchhhHhHHHHHHHh----cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCchhhhcC
Q 026140          172 PTVPPNRACLLSCGVSTGVGAAWRT----ANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIG  242 (243)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~----~~~~~g~~VlI~GaG~vG~~~v~la~~~--g~~~vi~~~~~~~~~~~~  242 (243)
                      +++++++|+.+++.+.|||+++...    .++ +|++|||+|+|++|++++|+|+.+  |+ +|++++++++|++++
T Consensus       138 ~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~  212 (344)
T 2h6e_A          138 NSLSPVEAAPLADAGTTSMGAIRQALPFISKF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFA  212 (344)
T ss_dssp             SSSCHHHHGGGGTHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHH
T ss_pred             CCCCHHHhhhhhhhhHHHHHHHHhhhhcccCC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHH
Confidence            9999999999999999999987554    288 999999999999999999999999  99 899999999888765

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=6.7e-41  Score=298.32  Aligned_cols=204  Identities=26%  Similarity=0.404  Sum_probs=182.0

Q ss_pred             CceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCC-C--CCCCCeeeecceeEEEEEeCCCCC
Q 026140           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-F--PAVFPRILGHEAIGVVESVGENVD   90 (243)
Q Consensus        14 ~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~-~--~~~~p~vlG~e~~G~Vv~vG~~v~   90 (243)
                      .|+|||+++.+++. +++++++.|+|+++||||||++++||++|++++.+.. .  ...+|.++|||++|+|+++|++++
T Consensus         5 ~~~mka~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~V~   83 (356)
T 1pl8_A            5 KPNNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVK   83 (356)
T ss_dssp             CCCCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCC
T ss_pred             ccCceEEEEecCCc-EEEEEccCCCCCCCeEEEEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEECCCCC
Confidence            37799999999876 9999999999999999999999999999999887432 1  135799999999999999999999


Q ss_pred             ccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCceeecccccceeeeeEEeccCcEEE
Q 026140           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (243)
Q Consensus        91 ~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~  169 (243)
                      +|++||+|++.+..+|++|.+|+.+.+++|+....   .|.. .+                   |+|+||++++.+++++
T Consensus        84 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~-------------------G~~aey~~v~~~~~~~  141 (356)
T 1pl8_A           84 HLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFF---CATPPDD-------------------GNLCRFYKHNAAFCYK  141 (356)
T ss_dssp             SCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEE---TTBTTBC-------------------CSCBSEEEEEGGGEEE
T ss_pred             CCCCCCEEEEeccCCCCCChHHHCcCcccCCCccc---cCcCCCC-------------------CccccEEEeehHHEEE
Confidence            99999999999999999999999999999987653   2321 23                   4999999999999999


Q ss_pred             cCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       170 ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +|+++++++|+++ .++.|+|+++ +.+++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|++++
T Consensus       142 iP~~l~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a  212 (356)
T 1pl8_A          142 LPDNVTFEEGALI-EPLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKA  212 (356)
T ss_dssp             CCTTSCHHHHHHH-HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred             CcCCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            9999999999876 4889999976 788999999999999999999999999999998899999999987764

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.2e-40  Score=296.18  Aligned_cols=203  Identities=29%  Similarity=0.463  Sum_probs=179.8

Q ss_pred             CceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhC-CCC--CCCCCeeeecceeEEEEEeCCCCC
Q 026140           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM-KDF--PAVFPRILGHEAIGVVESVGENVD   90 (243)
Q Consensus        14 ~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g-~~~--~~~~p~vlG~e~~G~Vv~vG~~v~   90 (243)
                      +++|||+++.+++. +++++++.|+|+++||||||++++||++|++++.+ .+.  ...+|.++|||++|+|+++|++++
T Consensus         2 ~~~mka~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~vG~~v~   80 (352)
T 1e3j_A            2 ASDNLSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVK   80 (352)
T ss_dssp             --CCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCC
T ss_pred             cccCEEEEEEcCCc-EEEEEecCCCCCCCeEEEEEEEEEEChhhHHHHcCCCCccccCCCCccccccceEEEEEeCCCCC
Confidence            35699999999876 99999999999999999999999999999998874 322  135799999999999999999999


Q ss_pred             ccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCceeecccccceeeeeEEeccCcEEE
Q 026140           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (243)
Q Consensus        91 ~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~  169 (243)
                      +|++||+|++.+..+|+.|.+|+.+.+++|+....   .|.. .+                   |+|+||++++.+++++
T Consensus        81 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~-------------------G~~aey~~v~~~~~~~  138 (352)
T 1e3j_A           81 HLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTF---CATPPDD-------------------GNLARYYVHAADFCHK  138 (352)
T ss_dssp             SCCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEE---TTBTTBC-------------------CSCBSEEEEEGGGEEE
T ss_pred             CCCCCCEEEEcCcCCCCCChhhhCcCcccCCCCcc---cCcCCCC-------------------ccceeEEEeChHHeEE
Confidence            99999999999999999999999999999987653   2321 23                   4999999999999999


Q ss_pred             cCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       170 ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +|+++++++|+++ .++.|+|+++ +.+++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|++++
T Consensus       139 iP~~~~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~  208 (352)
T 1e3j_A          139 LPDNVSLEEGALL-EPLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVA  208 (352)
T ss_dssp             CCTTSCHHHHHTH-HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CcCCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHH
Confidence            9999999999876 4888999976 78899999999999999999999999999999 799999999887764

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=1.6e-40  Score=294.05  Aligned_cols=202  Identities=30%  Similarity=0.411  Sum_probs=181.5

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVEG   95 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~~G   95 (243)
                      |||+++++++.++++++++.|+|+++||||||++++||++|++++.|.++. ..+|.++|||++|+|+++|+++++|++|
T Consensus         1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~GhE~~G~V~~vG~~v~~~~vG   80 (339)
T 1rjw_A            1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVG   80 (339)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEeEchhhHHHhcCCCCcCCCCCeeccccceEEEEEECCCCCcCCCC
Confidence            799999999866999999999999999999999999999999999887642 4679999999999999999999999999


Q ss_pred             CEEEeecc-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC
Q 026140           96 DVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (243)
Q Consensus        96 d~Vv~~~~-~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~  174 (243)
                      |+|++.+. ..|++|.+|+.+.+++|+....   .|...+|                   +|+||++++.++++++|+++
T Consensus        81 drV~~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~~P~~~  138 (339)
T 1rjw_A           81 DRVGIPWLYSACGHCDYCLSGQETLCEHQKN---AGYSVDG-------------------GYAEYCRAAADYVVKIPDNL  138 (339)
T ss_dssp             CEEEECSEEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGCEECCTTS
T ss_pred             CEEEEecCCCCCCCCchhhCcCcccCCCcce---eecCCCC-------------------cceeeEEechHHEEECCCCC
Confidence            99987664 3599999999999999987653   3333334                   99999999999999999999


Q ss_pred             ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++++||.+++.+.|+|+++. ..++++|++|||+|+|++|++++|+++.+|+ +|++++++++|++++
T Consensus       139 ~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~  204 (339)
T 1rjw_A          139 SFEEAAPIFCAGVTTYKALK-VTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELA  204 (339)
T ss_dssp             CHHHHGGGGTHHHHHHHHHH-HHTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHH
T ss_pred             CHHHhhhhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            99999999999999999865 4589999999999998999999999999999 999999999887754

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=1.6e-40  Score=294.39  Aligned_cols=203  Identities=28%  Similarity=0.439  Sum_probs=184.7

Q ss_pred             eeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccC
Q 026140           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (243)
Q Consensus        17 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~   93 (243)
                      |||+++.+++.+  +++++++.|+|+++||||||++++||++|++++.|.++. ..+|.++|||++|+|+++|+++++|+
T Consensus         1 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   80 (343)
T 2eih_A            1 MRAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVGPGVEGFA   80 (343)
T ss_dssp             CEEEEECSSSSGGGEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSSTTCCSSEECCSEEEEEEEEECSSCCSCC
T ss_pred             CeEEEEecCCCCceEEEEecCCCCCCCCEEEEEEEEEEeCHHHHHHhcCCCCCCCCCCcccccceEEEEEEECCCCCCCC
Confidence            799999999875  889999999999999999999999999999999987643 36899999999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (243)
Q Consensus        94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~  173 (243)
                      +||+|++.+..+|+.|.+|+.+.+++|+....   .|...+|                   +|+||++++.+.++++|++
T Consensus        81 vGdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~---~G~~~~G-------------------~~aey~~v~~~~~~~~P~~  138 (343)
T 2eih_A           81 PGDEVVINPGLSCGRCERCLAGEDNLCPRYQI---LGEHRHG-------------------TYAEYVVLPEANLAPKPKN  138 (343)
T ss_dssp             TTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---TTTSSCC-------------------SSBSEEEEEGGGEEECCTT
T ss_pred             CCCEEEECCCCCcccchhhccCcccccccccc---cCcCCCc-------------------cceeEEEeChHHeEECCCC
Confidence            99999999999999999999999999987653   3433334                   9999999999999999999


Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++++|+.+++++.|||+++.+.+++++|++|||+|+ |++|++++|+++.+|+ +|+++++++++++++
T Consensus       139 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~  207 (343)
T 2eih_A          139 LSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRA  207 (343)
T ss_dssp             SCHHHHHHSHHHHHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCHHHHhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            9999999899999999998766578999999999998 9999999999999999 999999999887754

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=7.5e-40  Score=294.14  Aligned_cols=213  Identities=26%  Similarity=0.322  Sum_probs=183.2

Q ss_pred             CCceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCC--
Q 026140           13 KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD--   90 (243)
Q Consensus        13 ~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~--   90 (243)
                      +..+|||+++.++++.+++++++.|+|+++||||||.+++||++|++++.|.++...+|.++|||++|+|+++| +|+  
T Consensus        14 ~~~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~P~v~GhE~~G~V~~vG-~V~~~   92 (380)
T 1vj0_A           14 MGLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVN-GEKRD   92 (380)
T ss_dssp             CCEEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEES-SCCBC
T ss_pred             hhhheEEEEEecCCCCeEEEEccCCCCCCCEEEEEEeEEeecccchHHhcCCCCCCCCCcccCcCcEEEEEEeC-Ccccc
Confidence            34579999999999559999999999999999999999999999999999876545689999999999999999 999  


Q ss_pred             ----ccCCCCEEEeeccCCCCCCcccc-CCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEe-cc
Q 026140           91 ----GVVEGDVVIPHFLADCTECVGCR-SKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVL-DI  164 (243)
Q Consensus        91 ----~~~~Gd~Vv~~~~~~~~~c~~c~-~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v-~~  164 (243)
                          +|++||+|++.+..+|+.|.+|+ .+.+++|+....   .|.....        +. .  ....|+|+||+++ +.
T Consensus        93 ~~~~~~~vGdrV~~~~~~~cg~C~~C~~~g~~~~C~~~~~---~g~~~~~--------~~-~--~~~~G~~aey~~v~~~  158 (380)
T 1vj0_A           93 LNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV---YGINRGC--------SE-Y--PHLRGCYSSHIVLDPE  158 (380)
T ss_dssp             TTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEE---TTTTCCS--------SS-T--TCCCSSSBSEEEECTT
T ss_pred             ccCCCCCCCCEEEEcccCCCCCCHHHhcCCCcccCCCcce---ecccccc--------CC-C--CCCCccccceEEEccc
Confidence                99999999999999999999999 999999987643   2320000        00 0  0001499999999 99


Q ss_pred             CcEEEcCCCCChh-hhcccchhhHhHHHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          165 AHVVKVDPTVPPN-RACLLSCGVSTGVGAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       165 ~~~~~ip~~~~~~-~aa~~~~~~~ta~~~l~~~~~-~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++++++|++++++ +|+++. ++.|||+++ +..+ +++|++|||+|+|++|++++|+|+.+|+.+|++++++++|++++
T Consensus       159 ~~~~~iP~~l~~~~~Aa~~~-~~~ta~~al-~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~  236 (380)
T 1vj0_A          159 TDVLKVSEKDDLDVLAMAMC-SGATAYHAF-DEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLA  236 (380)
T ss_dssp             CCEEEECTTSCHHHHHHHTT-HHHHHHHHH-HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHH
T ss_pred             ceEEECCCCCChHHhHhhhc-HHHHHHHHH-HhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHH
Confidence            9999999999999 677666 999999986 6788 99999999999999999999999999944999999999988765

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=1.3e-39  Score=290.32  Aligned_cols=212  Identities=23%  Similarity=0.309  Sum_probs=182.2

Q ss_pred             CceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccC
Q 026140           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVV   93 (243)
Q Consensus        14 ~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~   93 (243)
                      +|+|+++++.++.+.+++++++.|+|++|||||||.+++||++|++++.|.++...+|.++|||++|+|+++|+++++|+
T Consensus         7 ~m~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~v~~~~   86 (357)
T 2cf5_A            7 ERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFT   86 (357)
T ss_dssp             CCEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHTCTTTCCCSSBCCCCEEEEEEEEECSSCCSCC
T ss_pred             cceeEEEEEccCCCCcEEEEecCCCCCCCEEEEEEEEEeecchhhhhhcCCCCCCCCCeecCcceeEEEEEECCCCCCCC
Confidence            57899999988877799999999999999999999999999999999988765557899999999999999999999999


Q ss_pred             CCCEEEeecc-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCC
Q 026140           94 EGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (243)
Q Consensus        94 ~Gd~Vv~~~~-~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~  172 (243)
                      +||+|++.+. .+|++|.+|+.+.+++|+..... +.+....|              ....|+|+||++++.++++++|+
T Consensus        87 vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~-~~~~~~~g--------------~~~~G~~aey~~v~~~~~~~~P~  151 (357)
T 2cf5_A           87 VGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWS-YNDVYING--------------QPTQGGFAKATVVHQKFVVKIPE  151 (357)
T ss_dssp             TTCEEEECSEEECCSSSHHHHTTCGGGCTTCEET-TTSBCTTS--------------CBCCCSSBSCEEEEGGGEEECCS
T ss_pred             CCCEEEEcCCCCCCCCChHHhCcCcccCCCcccc-ccccccCC--------------CCCCCccccEEEechhhEEECcC
Confidence            9999986553 58999999999999999654321 11110011              00125999999999999999999


Q ss_pred             CCChhhhcccchhhHhHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          173 TVPPNRACLLSCGVSTGVGAAWRTANVE-VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       173 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~-~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++++++|+.+++.+.|+|+++ ...+++ +|++|||+|+|++|++++|+|+.+|+ +|++++++++|++++
T Consensus       152 ~ls~~~aa~l~~~~~ta~~~l-~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~  220 (357)
T 2cf5_A          152 GMAVEQAAPLLCAGVTVYSPL-SHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEA  220 (357)
T ss_dssp             SCCHHHHTGGGTHHHHHHHHH-HHTSTTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHH
T ss_pred             CCCHHHhhhhhhhHHHHHHHH-HhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHH
Confidence            999999999999999999975 457788 99999999999999999999999999 899999998887653

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=1.5e-39  Score=288.59  Aligned_cols=201  Identities=29%  Similarity=0.458  Sum_probs=181.8

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC--------CCCCCeeeecceeEEEEEeCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF--------PAVFPRILGHEAIGVVESVGEN   88 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~--------~~~~p~vlG~e~~G~Vv~vG~~   88 (243)
                      |||+++.+++.+++++++|.|+|+++||||||.+++||++|++++.|.++        ...+|.++|||++|+|+++|++
T Consensus         1 Mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~   80 (347)
T 1jvb_A            1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE   80 (347)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred             CeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEEEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEEEECCC
Confidence            79999999986799999999999999999999999999999999988654        3468999999999999999999


Q ss_pred             CCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEecc-CcE
Q 026140           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI-AHV  167 (243)
Q Consensus        89 v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~-~~~  167 (243)
                      +++|++||+|+..+..+|++|.+|+.+.+++|++...   .|...+|                   +|+||++++. +++
T Consensus        81 v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~~~G-------------------~~aey~~v~~~~~~  138 (347)
T 1jvb_A           81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRW---LGINFDG-------------------AYAEYVIVPHYKYM  138 (347)
T ss_dssp             CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEE---BTTTBCC-------------------SSBSEEEESCGGGE
T ss_pred             CCCCCCCCEEEeCCCCCCCCChhhhCcCcccCccccc---ccccCCC-------------------cceeEEEecCccce
Confidence            9999999999988889999999999999999987653   3333334                   9999999999 999


Q ss_pred             EEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHc-CCCeEEEEcCCchhhhcC
Q 026140          168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIG  242 (243)
Q Consensus       168 ~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~-g~~~vi~~~~~~~~~~~~  242 (243)
                      +++ +++++++|+.+++.+.|+|+++ ...++++|++|||+|+ |++|++++|+++.+ |+ +|+++++++++++++
T Consensus       139 ~~i-~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~  212 (347)
T 1jvb_A          139 YKL-RRLNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAA  212 (347)
T ss_dssp             EEC-SSSCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHH
T ss_pred             EEe-CCCCHHHcccchhhHHHHHHHH-HhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHH
Confidence            999 9999999999999999999976 5688999999999999 59999999999999 99 899999998887654

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=1.5e-39  Score=293.80  Aligned_cols=208  Identities=25%  Similarity=0.364  Sum_probs=181.4

Q ss_pred             eeeeEEeccCCCCeEEEEEecCCC-CC-----CeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCC
Q 026140           16 QCRAAIATAPGEPLVIDEVIVDPP-NS-----HEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (243)
Q Consensus        16 ~~ka~~~~~~~~~~~~~e~~~p~~-~~-----~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v   89 (243)
                      +|||+++++++. +++++++.|+| ++     +||||||++++||++|++++.|.++ ..+|.++|||++|+|+++|+++
T Consensus         2 ~MkA~~~~~~~~-l~~~~~p~P~~~~~~~~~~~eVlVkv~a~gic~~D~~~~~G~~~-~~~p~v~GhE~~G~V~~vG~~v   79 (398)
T 2dph_A            2 GNKSVVYHGTRD-LRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFI-VPKGHVLGHEITGEVVEKGSDV   79 (398)
T ss_dssp             CEEEEEEEETTE-EEEEEECCCCSEETTEECTTCEEEEEEEEECCHHHHHHHTTSSC-CCTTCBCCCCEEEEEEEECTTC
T ss_pred             ccEEEEEEcCCC-EEEEEccCCCCCCCcCCCCCeEEEEEEEEeecHHHHHHhcCCCC-CCCCcccCCceEEEEEEECCCC
Confidence            499999999876 99999999987 68     9999999999999999999998643 3679999999999999999999


Q ss_pred             CccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCC-----CCCCCCCCCCccccccCCceeecccccceeeeeEEecc
Q 026140           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK-----ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI  164 (243)
Q Consensus        90 ~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~-----~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~  164 (243)
                      ++|++||+|++.+..+|+.|.+|+++.+++|+.....     ...|... +               ...|+|+||++++.
T Consensus        80 ~~~~vGDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~~-~---------------~~~G~~aey~~v~~  143 (398)
T 2dph_A           80 ELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDL-K---------------GWSGGQAEYVLVPY  143 (398)
T ss_dssp             CSCCTTCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTTB-S---------------SCCCSSBSEEEESS
T ss_pred             CCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCcccccccccccccccc-C---------------CCCceeeeeEEecc
Confidence            9999999999999999999999999999999872110     0011100 0               01259999999998


Q ss_pred             C--cEEEcCCCCChhh----hcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          165 A--HVVKVDPTVPPNR----ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       165 ~--~~~~ip~~~~~~~----aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      +  +++++|+++++++    |+++++++.|||+++ +.+++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|
T Consensus       144 ~~~~~~~iP~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~  222 (398)
T 2dph_A          144 ADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGC-VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPER  222 (398)
T ss_dssp             HHHHCEECSSHHHHHHTHHHHTTTTTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHH
T ss_pred             ccCeEEECCCCCChhhhcchhhhhcCHHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHH
Confidence            7  8999999999988    888888999999987 78899999999999999999999999999999889999999998


Q ss_pred             hhcC
Q 026140          239 FEIG  242 (243)
Q Consensus       239 ~~~~  242 (243)
                      ++++
T Consensus       223 ~~~a  226 (398)
T 2dph_A          223 LKLL  226 (398)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8765

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=1.7e-38  Score=283.60  Aligned_cols=205  Identities=23%  Similarity=0.220  Sum_probs=178.2

Q ss_pred             CCCCceeeeEEeccCC-CCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC-CCCCCeeeecceeEEEEEeCCC
Q 026140           11 AGKPIQCRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGEN   88 (243)
Q Consensus        11 ~~~~~~~ka~~~~~~~-~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~vlG~e~~G~Vv~vG~~   88 (243)
                      +.+|.+|||+++.+++ +.+++++++.|+|++|||||||++++||++|++++.|.++ ...+|.++|||++|+|+++|++
T Consensus        22 ~~m~~~mkA~~~~~~~~~~l~~~e~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~GhE~~G~V~~vG~~  101 (363)
T 3uog_A           22 SMMSKWMQEWSTETVAPHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGKS  101 (363)
T ss_dssp             -CCCSEEEEEEBSCTTTTCCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCTTCCCCSSBCCCCEEEEEEEEECTT
T ss_pred             ccCchhhEEEEEccCCCCCcEEEeeeCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCcCcccceEEEEEEECCC
Confidence            3457789999999764 3499999999999999999999999999999999998765 3578999999999999999999


Q ss_pred             CCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCC-CCCCCCCCccccccCCceeecccccceeeeeEEeccCcE
Q 026140           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKIS-PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHV  167 (243)
Q Consensus        89 v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~-~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~  167 (243)
                      +++|++||+|++.+..      +|..+. ++|........ .|...+|                   +|+||++++.+++
T Consensus       102 v~~~~vGDrV~~~~~~------~c~~g~-~~c~~~~~~~~~~g~~~~G-------------------~~aey~~v~~~~~  155 (363)
T 3uog_A          102 VTRFRPGDRVISTFAP------GWLDGL-RPGTGRTPAYETLGGAHPG-------------------VLSEYVVLPEGWF  155 (363)
T ss_dssp             CCSCCTTCEEEECSST------TCCSSS-CCSCSSCCCCCCTTTTSCC-------------------CCBSEEEEEGGGE
T ss_pred             CCCCCCCCEEEEeccc------cccccc-cccccccccccccCcCCCC-------------------cceeEEEechHHe
Confidence            9999999999987653      567777 88874322111 3333344                   9999999999999


Q ss_pred             EEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       168 ~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++|+++++++||++++.+.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|++++
T Consensus       156 ~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~  229 (363)
T 3uog_A          156 VAAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRA  229 (363)
T ss_dssp             EECCTTSCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             EECCCCCCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHH
Confidence            99999999999999999999999988788999999999999999999999999999999 999999999888764

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=1.2e-38  Score=284.94  Aligned_cols=211  Identities=22%  Similarity=0.341  Sum_probs=180.0

Q ss_pred             CceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccC
Q 026140           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVV   93 (243)
Q Consensus        14 ~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~   93 (243)
                      +|+++++...+..+.+++++++.|+|++|||||||.+++||++|++++.|.++...+|.++|||++|+|+++|+++++|+
T Consensus        14 ~mk~~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~~~   93 (366)
T 1yqd_A           14 PVKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPLVPGHEIVGEVTEVGSKVKKVN   93 (366)
T ss_dssp             SEEEEEEEECSTTCCEEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHHTSSSCCCSSBCCCCCEEEEEEEECTTCCSCC
T ss_pred             CeeEEEEEEcCCCCCcEEEEccCCCCCCCeEEEEEEEEeechhhHHHHcCCCCCCCCCEecccceEEEEEEECCCCCcCC
Confidence            56777777776666699999999999999999999999999999999988765557899999999999999999999999


Q ss_pred             CCCEEEeecc-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCC
Q 026140           94 EGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (243)
Q Consensus        94 ~Gd~Vv~~~~-~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~  172 (243)
                      +||+|++.+. .+|+.|.+|+.+.+++|+..... +.+....|              ....|+|+||++++.++++++|+
T Consensus        94 vGDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~-~~~~~~~g--------------~~~~G~~aey~~v~~~~~~~~P~  158 (366)
T 1yqd_A           94 VGDKVGVGCLVGACHSCESCANDLENYCPKMILT-YASIYHDG--------------TITYGGYSNHMVANERYIIRFPD  158 (366)
T ss_dssp             TTCEEEECSEEECCSSSHHHHTTCGGGCTTCEES-SSSBCTTS--------------CBCCCSSBSEEEEEGGGCEECCT
T ss_pred             CCCEEEEcCCcCCCCCChhhhCcCcccCCccccc-ccccccCC--------------CcCCCccccEEEEchhhEEECCC
Confidence            9999987553 58999999999999999654321 11111011              00125999999999999999999


Q ss_pred             CCChhhhcccchhhHhHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          173 TVPPNRACLLSCGVSTGVGAAWRTANVE-VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       173 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~-~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ++++++|+.+++.+.|+|+++ ...+++ +|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++
T Consensus       159 ~ls~~~aa~l~~~~~ta~~al-~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~  226 (366)
T 1yqd_A          159 NMPLDGGAPLLCAGITVYSPL-KYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEE  226 (366)
T ss_dssp             TSCTTTTGGGGTHHHHHHHHH-HHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHH
T ss_pred             CCCHHHhhhhhhhHHHHHHHH-HhcCcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            999999999999999999976 456788 99999999999999999999999999 89999999888764

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=1.6e-39  Score=289.60  Aligned_cols=201  Identities=19%  Similarity=0.158  Sum_probs=176.8

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCC---CeeeecceeEEEEEeCCCCCccC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF---PRILGHEAIGVVESVGENVDGVV   93 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~---p~vlG~e~~G~Vv~vG~~v~~~~   93 (243)
                      |||++++++++++++++++.|+|+++||||||++++||++|+++++|.++...+   |.++|||++| |+++|++ ++|+
T Consensus         1 MkA~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G-V~~vG~~-~~~~   78 (357)
T 2b5w_A            1 MKAIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVLGHEAVG-VVVDPND-TELE   78 (357)
T ss_dssp             CEEEEEETTCSSCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHSCSTTSCTTCSEEECCSEEEE-EEEECTT-SSCC
T ss_pred             CeEEEEeCCCCceEEEECCCCCCCcCEEEEEEeEEeechhcHHHHcCCCCCCCCCCCCcccCceeEE-EEEECCC-CCCC
Confidence            799999999877999999999999999999999999999999999987654456   8999999999 9999999 9999


Q ss_pred             CCCEEEeeccCC--CCCCccccCCCCCCCCCCCCCCCCCC-CCCCCccccccCCceeecccccceeeeeEEeccCcEEEc
Q 026140           94 EGDVVIPHFLAD--CTECVGCRSKKGNLCSAFPFKISPWM-PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (243)
Q Consensus        94 ~Gd~Vv~~~~~~--~~~c~~c~~~~~~~~~~~~~~~~~g~-~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i  170 (243)
                      +||+|+..+..+  |++|.+|+.+.+++|+...... .|. ..+                   |+|+||++++.++++++
T Consensus        79 vGdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~-~g~~~~~-------------------G~~aey~~v~~~~~~~i  138 (357)
T 2b5w_A           79 EGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFE-RGIVGAH-------------------GYMSEFFTSPEKYLVRI  138 (357)
T ss_dssp             TTCEEEECSEECCTTCCCHHHHTTCGGGCCTTSCEE-ETTBEEC-------------------CSCBSEEEEEGGGEEEC
T ss_pred             CCCEEEECCcCCCCCCCChHHhCcCcccCCCCcccc-cCccCCC-------------------cceeeEEEEchHHeEEC
Confidence            999999988878  9999999999999998765310 022 112                   49999999999999999


Q ss_pred             CCCCChhhhcccchhhHhHHHHHHHhcCCCCC------CEEEEECCCHHHHHH-HHHH-HHcCCCeEEEEcCCch---hh
Q 026140          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVG------STVVIFGLGSIGLAV-AEGA-RLCGATRIIGVDVISE---KF  239 (243)
Q Consensus       171 p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g------~~VlI~GaG~vG~~~-v~la-~~~g~~~vi~~~~~~~---~~  239 (243)
                      |++++ ++| +++.++.|||+++ +.+++++|      ++|||+|+|++|+++ +|+| +.+|+++|++++++++   |+
T Consensus       139 P~~~~-~~a-al~~~~~ta~~al-~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~  215 (357)
T 2b5w_A          139 PRSQA-ELG-FLIEPISITEKAL-EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTI  215 (357)
T ss_dssp             CGGGS-TTG-GGHHHHHHHHHHH-HHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHH
T ss_pred             CCCcc-hhh-hhhchHHHHHHHH-HhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHH
Confidence            99999 654 5667999999987 67888999      999999999999999 9999 9999955999999988   87


Q ss_pred             hcC
Q 026140          240 EIG  242 (243)
Q Consensus       240 ~~~  242 (243)
                      +++
T Consensus       216 ~~~  218 (357)
T 2b5w_A          216 DII  218 (357)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.6e-39  Score=291.93  Aligned_cols=209  Identities=25%  Similarity=0.337  Sum_probs=181.0

Q ss_pred             eeeeEEeccCCCCeEEEEEecCCCC-CCe------EEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCC
Q 026140           16 QCRAAIATAPGEPLVIDEVIVDPPN-SHE------VRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN   88 (243)
Q Consensus        16 ~~ka~~~~~~~~~~~~~e~~~p~~~-~~e------VlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~   88 (243)
                      +|||+++.+++. +++++++.|+|. ++|      |||||++++||++|+++++|.++ ..+|.++|||++|+|+++|++
T Consensus         2 ~Mka~~~~~~~~-l~~~~~p~P~~~~~~e~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~p~v~GhE~~G~V~~vG~~   79 (398)
T 1kol_A            2 GNRGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT-AQVGLVLGHEITGEVIEKGRD   79 (398)
T ss_dssp             CEEEEEEEETTE-EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC-CCTTCBCCCCEEEEEEEECTT
T ss_pred             ccEEEEEecCCc-eEEEEecCCCCCCCCcccccceEEEEEEEEeechhhHHHHcCCCC-CCCCcccCcccEEEEEEECCC
Confidence            499999999876 999999999996 898      99999999999999999998654 357899999999999999999


Q ss_pred             CCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCC---CCCCCCCCCccccccCCceeecccccceeeeeEEeccC
Q 026140           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI---SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA  165 (243)
Q Consensus        89 v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~---~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~  165 (243)
                      +++|++||+|++.+..+|+.|.+|+++.+++|+......   ..|....               ....|+|+||++++.+
T Consensus        80 v~~~~vGDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~---------------~~~~G~~aey~~v~~~  144 (398)
T 1kol_A           80 VENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDM---------------GDWTGGQAEYVLVPYA  144 (398)
T ss_dssp             CCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTS---------------CCBCCCSBSEEEESSH
T ss_pred             CCcCCCCCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeeccC---------------CCCCceeeeEEEecch
Confidence            999999999999888999999999999999998764210   0111000               0012599999999986


Q ss_pred             --cEEEcCCCCChhh----hcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          166 --HVVKVDPTVPPNR----ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       166 --~~~~ip~~~~~~~----aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                        +++++|+++++++    ++.+++++.|||+++ ...++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|+
T Consensus       145 ~~~~~~~P~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~  223 (398)
T 1kol_A          145 DFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARL  223 (398)
T ss_dssp             HHHCEECSCHHHHHHTHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH
T ss_pred             hCeEEECCCCcchhhhcccccccccHHHHHHHHH-HHcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHH
Confidence              8999999999887    788888999999987 478999999999999999999999999999997799999999998


Q ss_pred             hcC
Q 026140          240 EIG  242 (243)
Q Consensus       240 ~~~  242 (243)
                      +++
T Consensus       224 ~~a  226 (398)
T 1kol_A          224 AHA  226 (398)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=7.8e-39  Score=283.51  Aligned_cols=202  Identities=23%  Similarity=0.346  Sum_probs=179.8

Q ss_pred             eeeEEeccCC-CCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140           17 CRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (243)
Q Consensus        17 ~ka~~~~~~~-~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G   95 (243)
                      |||+++...+ ..++++|+|.|+|++|||||||.+++||++|+++++|.++. .+|.++|||++|+|+++|++|++|++|
T Consensus         1 MKA~v~~~~~~~~~~l~e~~~P~~~p~eVLVkv~a~gic~~D~~~~~G~~~~-~~p~i~GhE~aG~V~~vG~~V~~~~~G   79 (348)
T 4eez_A            1 MKAAVVRHNPDGYADLVEKELRAIKPNEALLDMEYCGVCHTDLHVAAGDFGN-KAGTVLGHEGIGIVKEIGADVSSLQVG   79 (348)
T ss_dssp             CEEEEECSSCCSSEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTTTCC-CTTCBCCSEEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEEcCCCCcEEEEEeECCCCCCCEEEEEEEEEEECHHHHHHhcCCCCC-CCCcccceeEEEEEEEECceeeecccC
Confidence            7999986543 34899999999999999999999999999999999998764 689999999999999999999999999


Q ss_pred             CEEEeecc-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC
Q 026140           96 DVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (243)
Q Consensus        96 d~Vv~~~~-~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~  174 (243)
                      |+|++.+. ..|+.|.+|..+..+.|.....   .+...+|                   +|+||+.++.++++++|+++
T Consensus        80 drV~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~G-------------------~~ae~~~~~~~~~~~iP~~~  137 (348)
T 4eez_A           80 DRVSVAWFFEGCGHCEYCVSGNETFCREVKN---AGYSVDG-------------------GMAEEAIVVADYAVKVPDGL  137 (348)
T ss_dssp             CEEEEESEEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGSCBCCTTS
T ss_pred             CeEeecccccccCccccccCCcccccccccc---cccccCC-------------------cceeeccccccceeecCCCC
Confidence            99987665 4568899999999999987764   3444444                   99999999999999999999


Q ss_pred             ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++++|+++++.+.|+|+++ +..+.++|++|||+|+|++|.+++|+++.++..+||+++++++|++++
T Consensus       138 ~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~  204 (348)
T 4eez_A          138 DPIEASSITCAGVTTYKAI-KVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLA  204 (348)
T ss_dssp             CHHHHHHHHHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHH
T ss_pred             CHHHHhhcccceeeEEeee-cccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhh
Confidence            9999999999999999965 678899999999999999999999999987544999999999998765

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=100.00  E-value=4.7e-39  Score=291.10  Aligned_cols=209  Identities=22%  Similarity=0.266  Sum_probs=182.3

Q ss_pred             CCCCceeeeEEeccCCCCeEEEEEecCC-CCCCeEEEEEeeeecChhhhhhhhCCC-------CCCCCCeeeecceeEEE
Q 026140           11 AGKPIQCRAAIATAPGEPLVIDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWKMKD-------FPAVFPRILGHEAIGVV   82 (243)
Q Consensus        11 ~~~~~~~ka~~~~~~~~~~~~~e~~~p~-~~~~eVlVkv~~~~i~~~D~~~~~g~~-------~~~~~p~vlG~e~~G~V   82 (243)
                      ...+.+|++.++..++. +++++++.|+ |+++||||||.+++||++|++++.+..       ....+|.++|||++|+|
T Consensus        25 ~~~~~~m~a~~~~~~~~-l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~P~i~G~E~~G~V  103 (404)
T 3ip1_A           25 IEGKLTWLGSKVWRYPE-VRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVV  103 (404)
T ss_dssp             BTTTBBSCGGGTEEEEE-EEEEEECCCCCCSTTEEEEEEEEEECCHHHHHHHCBCTTSBBSCCSCBCSSEECCCEEEEEE
T ss_pred             hhhhhhcceEEEEeCCc-eEEEEcCCCCCCCcCEEEEEEeEeeeCHHHHHHhcCCCCccccccccCCCCcccCccceEEE
Confidence            34456677777776665 8999999999 999999999999999999999987642       12468999999999999


Q ss_pred             EEeCCCC------CccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeeccccccee
Q 026140           83 ESVGENV------DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSF  156 (243)
Q Consensus        83 v~vG~~v------~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~  156 (243)
                      +++|+++      ++|++||+|++.+..+|+.|.+|+++.+++|+....   .|...+|                   +|
T Consensus       104 ~~vG~~v~~~~~~~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~  161 (404)
T 3ip1_A          104 VEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNE---LGFNVDG-------------------AF  161 (404)
T ss_dssp             EEECTTCEETTTTEECCTTCEEEECSEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SS
T ss_pred             EEECCCccccccCCCCCCCCEEEECCccCCCCCHHHHCcCcccCccccc---cCCCCCC-------------------CC
Confidence            9999999      899999999999999999999999999999988764   4444444                   99


Q ss_pred             eeeEEeccCcEEEcCCCCC------hhhhcccchhhHhHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeE
Q 026140          157 SEYTVLDIAHVVKVDPTVP------PNRACLLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRI  229 (243)
Q Consensus       157 ~~~~~v~~~~~~~ip~~~~------~~~aa~~~~~~~ta~~~l~~~-~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~v  229 (243)
                      +||++++.+.++++|+.++      +.+++++..++.|||+++... +++++|++|||+|+|++|++++|+|+.+|+.+|
T Consensus       162 aey~~v~~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~V  241 (404)
T 3ip1_A          162 AEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKV  241 (404)
T ss_dssp             BSEEEEEGGGEEECGGGBTTBCTHHHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEE
T ss_pred             cceEEechHHeEeccccccccccccchhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEE
Confidence            9999999999999999876      345888888999999987644 489999999999999999999999999999889


Q ss_pred             EEEcCCchhhhcC
Q 026140          230 IGVDVISEKFEIG  242 (243)
Q Consensus       230 i~~~~~~~~~~~~  242 (243)
                      ++++++++|++++
T Consensus       242 i~~~~~~~~~~~~  254 (404)
T 3ip1_A          242 ILSEPSEVRRNLA  254 (404)
T ss_dssp             EEECSCHHHHHHH
T ss_pred             EEECCCHHHHHHH
Confidence            9999999998765

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=100.00  E-value=5.8e-38  Score=280.36  Aligned_cols=200  Identities=22%  Similarity=0.288  Sum_probs=171.0

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCC-CeEEEEEeeeecChhhhhhhhC--CCCCCCC---CeeeecceeEEEEEeCCCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNS-HEVRVRIICTSLCHSDVTFWKM--KDFPAVF---PRILGHEAIGVVESVGENVD   90 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~-~eVlVkv~~~~i~~~D~~~~~g--~~~~~~~---p~vlG~e~~G~Vv~vG~~v~   90 (243)
                      |||+++.++++++++++++.|+|++ +||||||++++||++|++++.|  .++...+   |.++|||++|+|++  ++ +
T Consensus         1 MkA~~~~~~g~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~--~~-~   77 (366)
T 2cdc_A            1 MKAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDFLVLGHEAIGVVEE--SY-H   77 (366)
T ss_dssp             CEEEEECTTSCCCEEEECCGGGSCCCSSEEEEEEEEEECHHHHHHHTTCC-------CCSCEECCSEEEEEECS--CC-S
T ss_pred             CeEEEEeCCCCceEEEECcCCCCCCCCEEEEEEEEEeeccccHHHHcCCCCCCCCCcCCCCCcCCcceEEEEEe--CC-C
Confidence            7999999998769999999999999 9999999999999999999988  5443356   99999999999999  66 8


Q ss_pred             ccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCceeecccccceeeeeEEeccCcEEE
Q 026140           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (243)
Q Consensus        91 ~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~  169 (243)
                      +|++||+|++.+..+|++|.+|+++.+++|+..... ..|.. .+                   |+|+||++++.+++++
T Consensus        78 ~~~~GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~-~~g~~~~~-------------------G~~aey~~v~~~~~~~  137 (366)
T 2cdc_A           78 GFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFG-EAGIHKMD-------------------GFMREWWYDDPKYLVK  137 (366)
T ss_dssp             SCCTTCEEEECSEECCSSSHHHHTTCGGGCSSSCCE-EETTBEEC-------------------CSCBSEEEECGGGEEE
T ss_pred             CCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCcc-cCCccCCC-------------------CceeEEEEechHHeEE
Confidence            899999999999999999999999999999865431 00221 22                   4999999999999999


Q ss_pred             cCCCCChhhhcccchhhHhHHHHHH--H--hcCCC--C-------CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          170 VDPTVPPNRACLLSCGVSTGVGAAW--R--TANVE--V-------GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       170 ip~~~~~~~aa~~~~~~~ta~~~l~--~--~~~~~--~-------g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      +|++++ ++|+ +..++.|+|+++.  +  ..+++  +       |++|||+|+|++|++++|+++.+|+ +|+++++++
T Consensus       138 iP~~l~-~~Aa-l~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~  214 (366)
T 2cdc_A          138 IPKSIE-DIGI-LAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRRE  214 (366)
T ss_dssp             ECGGGT-TTGG-GHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSC
T ss_pred             CcCCcc-hhhh-hcCcHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCc
Confidence            999999 8775 5669999999875  4  77888  8       9999999999999999999999999 999999988


Q ss_pred             ---hhhhcC
Q 026140          237 ---EKFEIG  242 (243)
Q Consensus       237 ---~~~~~~  242 (243)
                         +|++++
T Consensus       215 ~~~~~~~~~  223 (366)
T 2cdc_A          215 PTEVEQTVI  223 (366)
T ss_dssp             CCHHHHHHH
T ss_pred             cchHHHHHH
Confidence               777654

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=5.8e-37  Score=268.42  Aligned_cols=179  Identities=21%  Similarity=0.246  Sum_probs=162.3

Q ss_pred             ceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCC
Q 026140           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (243)
Q Consensus        15 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~   94 (243)
                      .+|||+++.+..+.+++++++.|+|++|||||||++++||++|++++.|.++...+|.++|||++|+|+++|+++++|++
T Consensus         3 ~tMka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~v   82 (315)
T 3goh_A            3 EQHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINWSNGHVPGVDGAGVIVKVGAKVDSKML   82 (315)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHHCTTCCCTTCCCCSEEEEEEEEECTTSCGGGT
T ss_pred             cceEEEEEeCCCCeeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHcCCCCcCCCCCEeeeeeEEEEEEeCCCCCCCCC
Confidence            46999999953334999999999999999999999999999999999998766788999999999999999999999999


Q ss_pred             CCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC
Q 026140           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (243)
Q Consensus        95 Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~  174 (243)
                      ||+|+..+.                           ...+                   |+|+||++++.++++++|+++
T Consensus        83 GdrV~~~~~---------------------------~~~~-------------------G~~aey~~v~~~~~~~iP~~~  116 (315)
T 3goh_A           83 GRRVAYHTS---------------------------LKRH-------------------GSFAEFTVLNTDRVMTLPDNL  116 (315)
T ss_dssp             TCEEEEECC---------------------------TTSC-------------------CSSBSEEEEETTSEEECCTTS
T ss_pred             CCEEEEeCC---------------------------CCCC-------------------cccccEEEEcHHHhccCcCCC
Confidence            999986532                           1112                   499999999999999999999


Q ss_pred             ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++++||++++++.|||+++ +.+++++|++|||+|+|++|++++|+|+.+|+ +|++++ +++|++++
T Consensus       117 ~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~  181 (315)
T 3goh_A          117 SFERAAALPCPLLTAWQAF-EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALA  181 (315)
T ss_dssp             CHHHHHTSHHHHHHHHHHH-TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHH
T ss_pred             CHHHHhhCccHHHHHHHHH-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHH
Confidence            9999999999999999987 88999999999999999999999999999999 999999 88887765

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=1.2e-36  Score=278.42  Aligned_cols=210  Identities=20%  Similarity=0.142  Sum_probs=178.2

Q ss_pred             CCCCCceeeeEEeccCC-------------CCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhh--------------
Q 026140           10 TAGKPIQCRAAIATAPG-------------EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK--------------   62 (243)
Q Consensus        10 ~~~~~~~~ka~~~~~~~-------------~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~--------------   62 (243)
                      ..+.|.+|||+++.+++             +.+++++++.|+|++|||||||++++||++|++...              
T Consensus        18 ~~~~p~tmkA~v~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVrV~a~gic~sD~~~~~~~~~~~~~~~~~~~   97 (447)
T 4a0s_A           18 AAPVPDTYLALHLRAEDADMFKGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNA   97 (447)
T ss_dssp             HSCCCSEEEEEEEEGGGTTTTTTCSSCCHHHHCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSCHHHHHHHHH
T ss_pred             ccCCChhheeeeeeccccccccccccCCCCCCceEEeccCCCCCCCeEEEEEEEEEECcHHhhhhccCcccchhhhhhhc
Confidence            45678999999999998             239999999999999999999999999999975421              


Q ss_pred             --CCCC-CCCCC-eeeecceeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcc
Q 026140           63 --MKDF-PAVFP-RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSR  138 (243)
Q Consensus        63 --g~~~-~~~~p-~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~  138 (243)
                        +.+. ...+| .++|||++|+|+++|++|++|++||+|++.+...|+.|. |..+..++|.....   .|....    
T Consensus        98 ~~g~~~~~~~~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~~~~-~~~~~~~~c~~~~~---~G~~~~----  169 (447)
T 4a0s_A           98 RQGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEP-ATHGDGMLGTEQRA---WGFETN----  169 (447)
T ss_dssp             TTCGGGGGGCCSEEECCSCEEEEEEEECTTCCSCCTTCEEEECSEECCTTSG-GGGTCTTCSTTCEE---TTTTSS----
T ss_pred             ccCccccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEecCcCcCccc-cccccccccccccc---ccccCC----
Confidence              1111 12456 699999999999999999999999999998888777776 44577888977654   343322    


Q ss_pred             ccccCCceeecccccceeeeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHH--hcCCCCCCEEEEECC-CHHHH
Q 026140          139 FKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR--TANVEVGSTVVIFGL-GSIGL  215 (243)
Q Consensus       139 ~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~--~~~~~~g~~VlI~Ga-G~vG~  215 (243)
                                    .|+|+||++++.++++++|+++++++||++++.+.|||+++..  .+++++|++|||+|+ |++|+
T Consensus       170 --------------~G~~aey~~v~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~  235 (447)
T 4a0s_A          170 --------------FGGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGS  235 (447)
T ss_dssp             --------------SCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHH
T ss_pred             --------------CCceeeeeecCHHHcEECCCCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHH
Confidence                          1499999999999999999999999999999999999998753  388999999999998 99999


Q ss_pred             HHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          216 AVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       216 ~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++|+|+.+|+ +||+++++++|++++
T Consensus       236 ~a~qla~~~Ga-~vi~~~~~~~~~~~~  261 (447)
T 4a0s_A          236 YAIQFVKNGGG-IPVAVVSSAQKEAAV  261 (447)
T ss_dssp             HHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             HHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            99999999999 899999999888764

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=4.3e-36  Score=266.05  Aligned_cols=184  Identities=24%  Similarity=0.269  Sum_probs=164.9

Q ss_pred             CCCCCCCceeeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEE
Q 026140            8 NKTAGKPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVES   84 (243)
Q Consensus         8 ~~~~~~~~~~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~   84 (243)
                      ......|.+|||+++.+++.+  +++++++.|+|++|||||||.+++||++|++++.|.++. ..+|.++|||++|+|++
T Consensus        13 ~~~~~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~   92 (342)
T 4eye_A           13 EAQTQGPGSMKAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVPGIETAGVVRS   92 (342)
T ss_dssp             -----CCCEEEEEEECSSSGGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSSSCCCSSBCCCSEEEEEEEE
T ss_pred             cccccCCcceEEEEEecCCCCceeEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCccceeEEEEEEE
Confidence            345677899999999997766  899999999999999999999999999999999987643 47899999999999999


Q ss_pred             eCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEecc
Q 026140           85 VGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI  164 (243)
Q Consensus        85 vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~  164 (243)
                      +|++++ |++||+|+....                              +                   |+|+||++++.
T Consensus        93 vG~~v~-~~vGDrV~~~~~------------------------------~-------------------G~~aey~~v~~  122 (342)
T 4eye_A           93 APEGSG-IKPGDRVMAFNF------------------------------I-------------------GGYAERVAVAP  122 (342)
T ss_dssp             CCTTSS-CCTTCEEEEECS------------------------------S-------------------CCSBSEEEECG
T ss_pred             ECCCCC-CCCCCEEEEecC------------------------------C-------------------CcceEEEEEcH
Confidence            999999 999999975421                              1                   49999999999


Q ss_pred             CcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       165 ~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +.++++|+++++++|+++++++.|+|+++.+.+++++|++|||+|+ |++|++++|+++.+|+ +|++++++++|++++
T Consensus       123 ~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~  200 (342)
T 4eye_A          123 SNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFV  200 (342)
T ss_dssp             GGEEECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHH
T ss_pred             HHeEECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            9999999999999999999999999998878899999999999998 9999999999999999 999999999888764

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=1.9e-36  Score=278.08  Aligned_cols=209  Identities=20%  Similarity=0.199  Sum_probs=178.4

Q ss_pred             CCCCceeeeEEeccC---------------CCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC---------
Q 026140           11 AGKPIQCRAAIATAP---------------GEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---------   66 (243)
Q Consensus        11 ~~~~~~~ka~~~~~~---------------~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---------   66 (243)
                      .+.|.+|||+++.++               ++.+++++++.|+|++|||||||.+++||++|++...+.+.         
T Consensus        25 ~~iP~tmkA~v~~~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~~~~~~~~~~~~~  104 (456)
T 3krt_A           25 LPLPESYRAITVHKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERY  104 (456)
T ss_dssp             SCCCSCEEEEEEEGGGTTTTTTCCGGGCCHHHHCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTCSSCSHHHHHHH
T ss_pred             CCCCcceEEEEEeccccccccccccccCCCCCCcEEEEccCCCCCCCeEEEEEEEEEecchhhhhhhcCcccchhhhhhc
Confidence            356889999999987               23489999999999999999999999999999876432110         


Q ss_pred             --------CCCCC-eeeecceeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCc
Q 026140           67 --------PAVFP-RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS  137 (243)
Q Consensus        67 --------~~~~p-~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~  137 (243)
                              ...+| .++|||++|+|+++|+++++|++||+|++.+. .|..|..|..+..++|+....   .|....   
T Consensus       105 g~~~~~~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~-~c~~~~~~~~~~~~~c~~~~~---~G~~~~---  177 (456)
T 3krt_A          105 GRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCL-SVELESSDGHNDTMLDPEQRI---WGFETN---  177 (456)
T ss_dssp             HTSCHHHHTTCCSEEECCSCCEEEEEEECTTCCSCCTTCEEEECCE-ECCCCSGGGTTSGGGCTTCEE---TTTTSS---
T ss_pred             cccccccccCCCCcccccceeEEEEEEECCCCCCCCCCCEEEEeCC-cccccccccccccccCccccc---cccCCC---
Confidence                    12466 69999999999999999999999999988654 588888888888899977654   344322   


Q ss_pred             cccccCCceeecccccceeeeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHHh--cCCCCCCEEEEECC-CHHH
Q 026140          138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT--ANVEVGSTVVIFGL-GSIG  214 (243)
Q Consensus       138 ~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~--~~~~~g~~VlI~Ga-G~vG  214 (243)
                                     .|+|+||++++.++++++|+++++++||++++.+.|||+++...  +++++|++|||+|+ |++|
T Consensus       178 ---------------~G~~aey~~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG  242 (456)
T 3krt_A          178 ---------------FGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLG  242 (456)
T ss_dssp             ---------------SCSSBSEEEEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHH
T ss_pred             ---------------CCcccceEEechHHeeECCCCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHH
Confidence                           14999999999999999999999999999999999999987644  78999999999998 9999


Q ss_pred             HHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          215 LAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       215 ~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++++|+|+.+|+ +||+++++++|++++
T Consensus       243 ~~avqlak~~Ga-~vi~~~~~~~~~~~~  269 (456)
T 3krt_A          243 SYATQFALAGGA-NPICVVSSPQKAEIC  269 (456)
T ss_dssp             HHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             HHHHHHHHHcCC-eEEEEECCHHHHHHH
Confidence            999999999999 899999999988765

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=3.6e-36  Score=266.15  Aligned_cols=179  Identities=21%  Similarity=0.257  Sum_probs=164.8

Q ss_pred             CceeeeEEeccCCCC---eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCC
Q 026140           14 PIQCRAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENV   89 (243)
Q Consensus        14 ~~~~ka~~~~~~~~~---~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v   89 (243)
                      +++|||+++.+++++   +++++++.|+|++|||||||++++||++|++++.|.++. ..+|.++|||++|+|+++|+++
T Consensus         2 ~~~mka~~~~~~g~p~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~v   81 (340)
T 3gms_A            2 SLHGKLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAFV   81 (340)
T ss_dssp             CCEEEEEEESSCSCHHHHEEEEEEECCCCCTTEEEEEEEEEECCHHHHGGGGTTTTTTSCSSBCCCSCCEEEEEEECTTS
T ss_pred             CcccEEEEEecCCCchheEEEEecCCCCCCCCEEEEEEEEecCCHHHHHHhcCCCCCCCCCCCcCCcceEEEEEEeCCCC
Confidence            478999999999987   899999999999999999999999999999999987653 4789999999999999999999


Q ss_pred             CccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEE
Q 026140           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (243)
Q Consensus        90 ~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~  169 (243)
                      ++|++||+|+...                              .+                   |+|+||++++.+.+++
T Consensus        82 ~~~~vGdrV~~~~------------------------------~~-------------------G~~aey~~v~~~~~~~  112 (340)
T 3gms_A           82 SRELIGKRVLPLR------------------------------GE-------------------GTWQEYVKTSADFVVP  112 (340)
T ss_dssp             CGGGTTCEEEECS------------------------------SS-------------------CSSBSEEEEEGGGEEE
T ss_pred             CCCCCCCEEEecC------------------------------CC-------------------ccceeEEEcCHHHeEE
Confidence            9999999997431                              12                   4999999999999999


Q ss_pred             cCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       170 ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +|+++++++||++++...|+|.++.+.+++++|++|||+|+ |++|++++|+++.+|+ +|+++++++++++++
T Consensus       113 vP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~  185 (340)
T 3gms_A          113 IPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEEL  185 (340)
T ss_dssp             CCTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHH
T ss_pred             CCCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            99999999999999999999998888899999999999998 5999999999999999 999999999887764

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=1.2e-35  Score=263.18  Aligned_cols=183  Identities=22%  Similarity=0.248  Sum_probs=162.6

Q ss_pred             CCceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC--CCCCCeeeecceeEEEEEeCCCCC
Q 026140           13 KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF--PAVFPRILGHEAIGVVESVGENVD   90 (243)
Q Consensus        13 ~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~--~~~~p~vlG~e~~G~Vv~vG~~v~   90 (243)
                      .|.+|||+++.+++++++++++|.|+|++|||||||.+++||++|++++.|..+  ...+|.++|||++|+|+++|++++
T Consensus         4 ~~~~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~P~v~G~E~~G~V~~vG~~v~   83 (343)
T 3gaz_A            4 TTPTMIAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAVGPEVD   83 (343)
T ss_dssp             --CEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCCGGGCCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             CchhheEEEEecCCCceEEEeccCCCCCCCEEEEEEEEEEeCHhhHHHhCCCCCCCCCCCCcccCcceEEEEEEECCCCC
Confidence            357899999999998899999999999999999999999999999999988642  256899999999999999999999


Q ss_pred             ccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCceeecccccceeeeeEEeccCcEEE
Q 026140           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (243)
Q Consensus        91 ~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~  169 (243)
                      +|++||+|+....                          |.. .+                   |+|+||++++.+.+++
T Consensus        84 ~~~vGdrV~~~~~--------------------------g~~~~~-------------------G~~aey~~v~~~~~~~  118 (343)
T 3gaz_A           84 SFRVGDAVFGLTG--------------------------GVGGLQ-------------------GTHAQFAAVDARLLAS  118 (343)
T ss_dssp             SCCTTCEEEEECC--------------------------SSTTCC-------------------CSSBSEEEEEGGGEEE
T ss_pred             CCCCCCEEEEEeC--------------------------CCCCCC-------------------cceeeEEEecHHHeee
Confidence            9999999975321                          100 12                   4999999999999999


Q ss_pred             cCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       170 ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +|+++++++|+++++.+.|||+++.+.+++++|++|||+|+ |++|++++|+++.+|+ +|+++ .+++|++++
T Consensus       119 ~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~  190 (343)
T 3gaz_A          119 KPAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYV  190 (343)
T ss_dssp             CCTTSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHH
T ss_pred             CCCCCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHH
Confidence            99999999999999999999998878899999999999996 9999999999999999 89999 788887654

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=1.3e-35  Score=260.60  Aligned_cols=181  Identities=19%  Similarity=0.193  Sum_probs=158.8

Q ss_pred             CceeeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCC-----CCCCCCeeeecceeEEEEEeC
Q 026140           14 PIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-----FPAVFPRILGHEAIGVVESVG   86 (243)
Q Consensus        14 ~~~~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~-----~~~~~p~vlG~e~~G~Vv~vG   86 (243)
                      .++|||+++.+++.+  +++++.+.|+|++|||||||++++||++|++++.|..     ....+|.++|||++|+|+++|
T Consensus         4 m~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~vG   83 (321)
T 3tqh_A            4 MKEMKAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELG   83 (321)
T ss_dssp             -CEEEEEEESSSCSGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEEEEEEEC
T ss_pred             cccceEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEEcCHHHHHHhcCCccccccccCCCCCcccceeEEEEEEeC
Confidence            368999999998876  8999999999999999999999999999999998832     234689999999999999999


Q ss_pred             CCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCc
Q 026140           87 ENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH  166 (243)
Q Consensus        87 ~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~  166 (243)
                      +++++|++||+|+..+..++                          .+                   |+|+||++++.+.
T Consensus        84 ~~v~~~~~GdrV~~~~~~~~--------------------------~~-------------------G~~aey~~v~~~~  118 (321)
T 3tqh_A           84 SDVNNVNIGDKVMGIAGFPD--------------------------HP-------------------CCYAEYVCASPDT  118 (321)
T ss_dssp             TTCCSCCTTCEEEEECSTTT--------------------------CC-------------------CCSBSEEEECGGG
T ss_pred             CCCCCCCCCCEEEEccCCCC--------------------------CC-------------------CcceEEEEecHHH
Confidence            99999999999987542110                          12                   4999999999999


Q ss_pred             EEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          167 VVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       167 ~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~G-aG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++++|+++++++|+++++.+.|||+++ +.+++++|++|||+| +|++|++++|+|+.+|+ +|+++++ +++++++
T Consensus       119 ~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~~-~~~~~~~  192 (321)
T 3tqh_A          119 IIQKLEKLSFLQAASLPTAGLTALQAL-NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTAS-KRNHAFL  192 (321)
T ss_dssp             EEECCTTSCHHHHHHSHHHHHHHHHHH-HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEEC-HHHHHHH
T ss_pred             hccCCCCCCHHHHhhhhhHHHHHHHHH-HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEec-cchHHHH
Confidence            999999999999999999999999987 889999999999998 49999999999999999 8999874 4555543

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=2.3e-35  Score=262.63  Aligned_cols=184  Identities=22%  Similarity=0.291  Sum_probs=161.3

Q ss_pred             CCCCCCCCCCCceeeeEEeccCCCC---eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeeccee
Q 026140            4 EKPSNKTAGKPIQCRAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAI   79 (243)
Q Consensus         4 ~~~~~~~~~~~~~~ka~~~~~~~~~---~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~   79 (243)
                      ..|--....+|.+|||+++.+++.+   +++++++.|+|+++||||||.+++||++|++++.|.++. ..+|.++|||++
T Consensus        14 ~~~~~~~~~m~~~mka~~~~~~g~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~   93 (357)
T 1zsy_A           14 GTENLYFQSMPARVRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGV   93 (357)
T ss_dssp             TCSCCCCCCCCCCEEEEEESSSSCHHHHEEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSEECCSCCE
T ss_pred             chhhhhhhhCchhhEEEEEecCCCccceEEEeeccCCCCCCCEEEEEEEECCCCHHHhhHhcCCCCCCCCCCccccceEE
Confidence            3444445567788999999999975   788999999999999999999999999999999987654 257999999999


Q ss_pred             EEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeee
Q 026140           80 GVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEY  159 (243)
Q Consensus        80 G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~  159 (243)
                      |+|+++|+++++|++||+|+..+.                             .+                   |+|+||
T Consensus        94 G~V~~vG~~v~~~~vGdrV~~~~~-----------------------------~~-------------------G~~aey  125 (357)
T 1zsy_A           94 AQVVAVGSNVTGLKPGDWVIPANA-----------------------------GL-------------------GTWRTE  125 (357)
T ss_dssp             EEEEEECTTCCSCCTTCEEEESSS-----------------------------CS-------------------CCSBSE
T ss_pred             EEEEEeCCCCCCCCCCCEEEEcCC-----------------------------CC-------------------ccceeE
Confidence            999999999999999999975421                             01                   499999


Q ss_pred             EEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          160 TVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       160 ~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ++++.+.++++|+++++++||++++.+.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ ++|++.+++
T Consensus       126 ~~v~~~~~~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~  202 (357)
T 1zsy_A          126 AVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGL-RTINVVRDR  202 (357)
T ss_dssp             EEEEGGGEEEECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEECCC
T ss_pred             EecCHHHcEECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCC-EEEEEecCc
Confidence            999999999999999999999999899999998877789999999999998 9999999999999999 677666443

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=1.9e-35  Score=260.75  Aligned_cols=179  Identities=23%  Similarity=0.262  Sum_probs=163.3

Q ss_pred             CCCceeeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCC
Q 026140           12 GKPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (243)
Q Consensus        12 ~~~~~~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v   89 (243)
                      ..|.+|||+++.+++++  +++++.+.|+|++|||||||++++||++|++++.|.++. .+|.++|||++|+|+++|+++
T Consensus         4 ~~p~~mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~-~~P~i~G~e~~G~V~~vG~~v   82 (334)
T 3qwb_A            4 TIPEQQKVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPC-EKPYVLGREASGTVVAKGKGV   82 (334)
T ss_dssp             -CCSEEEEEEESSSSSGGGEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHHTSSCC-CSSEECCSEEEEEEEEECTTC
T ss_pred             CCchheEEEEEecCCCCceeEEEeccCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCC-CCCCccccceEEEEEEECCCC
Confidence            35788999999999875  889999999999999999999999999999999987653 589999999999999999999


Q ss_pred             CccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEec-cCcEE
Q 026140           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLD-IAHVV  168 (243)
Q Consensus        90 ~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~-~~~~~  168 (243)
                      ++|++||+|+...                               +                   |+|+||++++ .+.++
T Consensus        83 ~~~~~GdrV~~~~-------------------------------~-------------------G~~aey~~v~~~~~~~  112 (334)
T 3qwb_A           83 TNFEVGDQVAYIS-------------------------------N-------------------STFAQYSKISSQGPVM  112 (334)
T ss_dssp             CSCCTTCEEEEEC-------------------------------S-------------------SCSBSEEEEETTSSEE
T ss_pred             CCCCCCCEEEEee-------------------------------C-------------------CcceEEEEecCcceEE
Confidence            9999999997531                               1                   4999999999 99999


Q ss_pred             EcCCCCChhh---hcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          169 KVDPTVPPNR---ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       169 ~ip~~~~~~~---aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++|+++++++   |+.+++.+.|+|+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|++++++++|++++
T Consensus       113 ~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~  189 (334)
T 3qwb_A          113 KLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIA  189 (334)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             ECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            9999999999   88888899999998877789999999999995 9999999999999999 999999999888764

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=2.6e-35  Score=261.26  Aligned_cols=179  Identities=26%  Similarity=0.311  Sum_probs=160.6

Q ss_pred             ceeeeEEeccCC-----CCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCC
Q 026140           15 IQCRAAIATAPG-----EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (243)
Q Consensus        15 ~~~ka~~~~~~~-----~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v   89 (243)
                      |+|||+++++++     +.+++++++.|+|++|||||||++++||++|++++.+.  ...+|.++|||++|+|+++|+++
T Consensus         1 m~MkA~~~~~~G~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~--~~~~p~i~G~e~~G~V~~vG~~v   78 (346)
T 3fbg_A            1 MSLKAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMD--VSKAPRVLGFDAIGVVESVGNEV   78 (346)
T ss_dssp             -CEEEEEBSSCCCGGGCCCCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHTTSC--CSSSCBCCCCCEEEEEEEECTTC
T ss_pred             CCcEEEEEEeccccCCCceeEeccccCCCCCCCEEEEEEEEEEcCHHHHHHHhCC--CCCCCcCcCCccEEEEEEeCCCC
Confidence            579999999876     34999999999999999999999999999999999886  34689999999999999999999


Q ss_pred             CccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEE
Q 026140           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (243)
Q Consensus        90 ~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~  169 (243)
                      ++|++||+|+....                           ...+                   |+|+||++++.+.+++
T Consensus        79 ~~~~~GdrV~~~~~---------------------------~~~~-------------------G~~aey~~v~~~~~~~  112 (346)
T 3fbg_A           79 TMFNQGDIVYYSGS---------------------------PDQN-------------------GSNAEYQLINERLVAK  112 (346)
T ss_dssp             CSCCTTCEEEECCC---------------------------TTSC-------------------CSSBSEEEEEGGGEEE
T ss_pred             CcCCCCCEEEEcCC---------------------------CCCC-------------------cceeEEEEEChHHeEE
Confidence            99999999975321                           1112                   4999999999999999


Q ss_pred             cCCCCChhhhcccchhhHhHHHHHHHhcCCC------CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVE------VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       170 ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~------~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +|+++++++|+++++.+.|||+++.+..+++      +|++|||+|+ |++|++++|+|+.+|+ +|++++++++|++++
T Consensus       113 iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~  191 (346)
T 3fbg_A          113 APKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWT  191 (346)
T ss_dssp             CCSSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHH
T ss_pred             CCCCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            9999999999999999999999888888888      9999999964 9999999999999999 999999999988765

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=1.8e-35  Score=260.19  Aligned_cols=177  Identities=26%  Similarity=0.258  Sum_probs=163.1

Q ss_pred             eeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCC
Q 026140           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (243)
Q Consensus        17 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~   94 (243)
                      |||+++++++.+  +++++.+.|+|++|||||||++++||++|++++.|.++...+|.++|||++|+|+++|+++++|++
T Consensus         2 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~~   81 (325)
T 3jyn_A            2 AKRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPSGLGAEGAGVVEAVGDEVTRFKV   81 (325)
T ss_dssp             EEEEEBSSCSSGGGCEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCCCEEEEEEEECTTCCSCCT
T ss_pred             cEEEEEecCCCcceeEEeecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCceeEEEEEEECCCCCCCCC
Confidence            899999999876  899999999999999999999999999999999998776678999999999999999999999999


Q ss_pred             CCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC
Q 026140           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (243)
Q Consensus        95 Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~  174 (243)
                      ||+|+....                             .+                   |+|+||++++.+.++++|+++
T Consensus        82 GdrV~~~~~-----------------------------~~-------------------G~~aey~~v~~~~~~~~P~~~  113 (325)
T 3jyn_A           82 GDRVAYGTG-----------------------------PL-------------------GAYSEVHVLPEANLVKLADSV  113 (325)
T ss_dssp             TCEEEESSS-----------------------------SS-------------------CCSBSEEEEEGGGEEECCTTS
T ss_pred             CCEEEEecC-----------------------------CC-------------------ccccceEEecHHHeEECCCCC
Confidence            999975321                             12                   499999999999999999999


Q ss_pred             ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++++|+.+++...|+|+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|++++++++|++++
T Consensus       114 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~  181 (325)
T 3jyn_A          114 SFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHA  181 (325)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHH
T ss_pred             CHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            999999999999999998888889999999999995 9999999999999999 999999999888764

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=1.4e-35  Score=263.72  Aligned_cols=181  Identities=24%  Similarity=0.255  Sum_probs=164.8

Q ss_pred             CCCceeeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCC
Q 026140           12 GKPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGEN   88 (243)
Q Consensus        12 ~~~~~~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~   88 (243)
                      .+|.+|||+++.+++.+  +++++.+.|+|++|||||||.+++||++|++++.|.++. ..+|.++|||++|+|+++|++
T Consensus        24 ~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~  103 (353)
T 4dup_A           24 SLPQEMRFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPILGLELSGEIVGVGPG  103 (353)
T ss_dssp             CCCSSEEEEEESSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTSSCCCTTSCSSSCCEEEEEEEEECTT
T ss_pred             CCChheeEEEEccCCCccceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCccccccEEEEEEECCC
Confidence            46788999999998765  899999999999999999999999999999999987654 357899999999999999999


Q ss_pred             CCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEE
Q 026140           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV  168 (243)
Q Consensus        89 v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~  168 (243)
                      +++|++||+|+....                              +                   |+|+||++++.+.++
T Consensus       104 v~~~~vGdrV~~~~~------------------------------~-------------------G~~aey~~v~~~~~~  134 (353)
T 4dup_A          104 VSGYAVGDKVCGLAN------------------------------G-------------------GAYAEYCLLPAGQIL  134 (353)
T ss_dssp             CCSCCTTCEEEEECS------------------------------S-------------------CCSBSEEEEEGGGEE
T ss_pred             CCCCCCCCEEEEecC------------------------------C-------------------CceeeEEEEcHHHcE
Confidence            999999999975321                              1                   499999999999999


Q ss_pred             EcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       169 ~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++|+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+++.+|+ +|++++++++|++++
T Consensus       135 ~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~  208 (353)
T 4dup_A          135 PFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEAC  208 (353)
T ss_dssp             ECCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             eCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            999999999999999999999998878899999999999965 9999999999999999 899999999888764

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=2.7e-35  Score=263.08  Aligned_cols=187  Identities=20%  Similarity=0.182  Sum_probs=162.1

Q ss_pred             CCCCCCceeeeEEeccC---CC--CeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEE
Q 026140            9 KTAGKPIQCRAAIATAP---GE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVE   83 (243)
Q Consensus         9 ~~~~~~~~~ka~~~~~~---~~--~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv   83 (243)
                      +.....++|||++++++   +.  .++++++|.|+|+++||||||++++||++|++++.|.++...+|.++|||++|+|+
T Consensus        15 ~~~~~m~~MkA~~~~~~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~   94 (363)
T 4dvj_A           15 TENLYFQSMKAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWKVIGYDAAGIVS   94 (363)
T ss_dssp             ----CCCEEEEEEBSSCCCTTSTTSSEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCCC--CCSBCCCCCEEEEEE
T ss_pred             chhhhhheeEEEEEeccCCCCCCceEEEeecCCCCCCCCEEEEEEEEEEeCHHHHHHHcCCCCCCCCCCcccceeEEEEE
Confidence            34455678999999876   22  28999999999999999999999999999999999987766889999999999999


Q ss_pred             EeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEec
Q 026140           84 SVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLD  163 (243)
Q Consensus        84 ~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~  163 (243)
                      ++|+++++|++||+|+....                           ...+                   |+|+||++++
T Consensus        95 ~vG~~v~~~~vGdrV~~~~~---------------------------~~~~-------------------G~~aey~~v~  128 (363)
T 4dvj_A           95 AVGPDVTLFRPGDEVFYAGS---------------------------IIRP-------------------GTNAEFHLVD  128 (363)
T ss_dssp             EECTTCCSCCTTCEEEECCC---------------------------TTSC-------------------CSCBSEEEEE
T ss_pred             EeCCCCCCCCCCCEEEEccC---------------------------CCCC-------------------ccceEEEEeC
Confidence            99999999999999975321                           1112                   4999999999


Q ss_pred             cCcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCC-----CCCEEEEECC-CHHHHHHHHHHHHc-CCCeEEEEcCCc
Q 026140          164 IAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVE-----VGSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVIS  236 (243)
Q Consensus       164 ~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~-----~g~~VlI~Ga-G~vG~~~v~la~~~-g~~~vi~~~~~~  236 (243)
                      .+.++++|+++++++||++++.+.|||+++.+..+++     +|++|||+|+ |++|++++|+|+.+ |+ +|+++++++
T Consensus       129 ~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~-~Vi~~~~~~  207 (363)
T 4dvj_A          129 ERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDL-TVIATASRP  207 (363)
T ss_dssp             GGGCEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCS-EEEEECSSH
T ss_pred             HHHeeECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCC-EEEEEeCCH
Confidence            9999999999999999999999999999887888888     8999999995 99999999999985 77 999999999


Q ss_pred             hhhhcC
Q 026140          237 EKFEIG  242 (243)
Q Consensus       237 ~~~~~~  242 (243)
                      +|++++
T Consensus       208 ~~~~~~  213 (363)
T 4dvj_A          208 ETQEWV  213 (363)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988765

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=100.00  E-value=4.5e-35  Score=262.24  Aligned_cols=183  Identities=22%  Similarity=0.202  Sum_probs=156.9

Q ss_pred             CCceeeeEEeccCCCCeEEE-EEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCc
Q 026140           13 KPIQCRAAIATAPGEPLVID-EVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG   91 (243)
Q Consensus        13 ~~~~~ka~~~~~~~~~~~~~-e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~   91 (243)
                      +|.+|||+++.++++ ++++ +++.|+|++|||||||++++||++|++++.+.   ..+|.++|||++|+|+++|+++++
T Consensus         8 ~p~~mkA~v~~~~~~-l~~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~---~~~p~v~G~e~~G~V~~vG~~v~~   83 (371)
T 3gqv_A            8 PPPQQTALTVNDHDE-VTVWNAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQF---ATPWAFLGTDYAGTVVAVGSDVTH   83 (371)
T ss_dssp             CCSCEEEEEECTTSC-EEEEEEECCCCCCTTSEEEEEEEEECCGGGGC--------CCTTSCCCSEEEEEEEEECTTCCS
T ss_pred             CchhceeEEEcCCCc-eEEeccCCCCCCCCCEEEEEEEEEEcCHHHHHHhhcC---CCCCccCccccEEEEEEeCCCCCC
Confidence            577899999999987 9998 99999999999999999999999999988763   346899999999999999999999


Q ss_pred             cCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcC
Q 026140           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (243)
Q Consensus        92 ~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip  171 (243)
                      |++||+|+.       .|..|..+               ...+                   |+|+||++++.+.++++|
T Consensus        84 ~~~GdrV~~-------~~~~~~~~---------------~~~~-------------------G~~aey~~v~~~~~~~~P  122 (371)
T 3gqv_A           84 IQVGDRVYG-------AQNEMCPR---------------TPDQ-------------------GAFSQYTVTRGRVWAKIP  122 (371)
T ss_dssp             CCTTCEEEE-------ECCTTCTT---------------CTTC-------------------CSSBSEEECCTTCEEECC
T ss_pred             CCCCCEEEE-------eccCCCCC---------------CCCC-------------------CcCcCeEEEchhheEECC
Confidence            999999954       34455432               1122                   499999999999999999


Q ss_pred             CCCChhhhcccchhhHhHHHHHHHh-cCC-----------CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          172 PTVPPNRACLLSCGVSTGVGAAWRT-ANV-----------EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~-~~~-----------~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      +++++++|+++++.+.|||+++.+. .++           ++|++|||+|+ |++|++++|+|+.+|+ +||++. +++|
T Consensus       123 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~~~  200 (371)
T 3gqv_A          123 KGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SPHN  200 (371)
T ss_dssp             TTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CGGG
T ss_pred             CCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCccccccccCCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CHHH
Confidence            9999999999999999999988777 553           89999999999 9999999999999999 899887 7788


Q ss_pred             hhcC
Q 026140          239 FEIG  242 (243)
Q Consensus       239 ~~~~  242 (243)
                      ++++
T Consensus       201 ~~~~  204 (371)
T 3gqv_A          201 FDLA  204 (371)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7764

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.2e-34  Score=257.82  Aligned_cols=181  Identities=23%  Similarity=0.333  Sum_probs=161.5

Q ss_pred             CCceeeeEEeccCCCC--eEE-EEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCC
Q 026140           13 KPIQCRAAIATAPGEP--LVI-DEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGEN   88 (243)
Q Consensus        13 ~~~~~ka~~~~~~~~~--~~~-~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~   88 (243)
                      .+.+|||+++.+++.+  +++ ++++.|+|++|||||||.+++||++|++++.|.++. ..+|.++|||++|+|+++|++
T Consensus        26 ~~~~Mka~~~~~~g~~~~l~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~~  105 (351)
T 1yb5_A           26 GQKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDN  105 (351)
T ss_dssp             --CEEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTT
T ss_pred             CcceEEEEEEccCCCcceeEEeeecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcCCceeEEEEEEECCC
Confidence            4567999999988754  788 799999999999999999999999999999887642 468999999999999999999


Q ss_pred             CCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEE
Q 026140           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV  168 (243)
Q Consensus        89 v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~  168 (243)
                      +++|++||+|+..+.                             .+                   |+|+||++++.++++
T Consensus       106 v~~~~vGdrV~~~~~-----------------------------~~-------------------G~~aey~~v~~~~~~  137 (351)
T 1yb5_A          106 ASAFKKGDRVFTSST-----------------------------IS-------------------GGYAEYALAADHTVY  137 (351)
T ss_dssp             CTTCCTTCEEEESCC-----------------------------SS-------------------CSSBSEEEEEGGGEE
T ss_pred             CCCCCCCCEEEEeCC-----------------------------CC-------------------CcceeEEEECHHHeE
Confidence            999999999975421                             01                   499999999999999


Q ss_pred             EcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       169 ~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++|+++++++||++++++.|||+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|+++++++++++++
T Consensus       138 ~~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~  211 (351)
T 1yb5_A          138 KLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIV  211 (351)
T ss_dssp             ECCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             ECCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHH
Confidence            999999999999999999999998877889999999999998 9999999999999999 899999998887653

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.7e-34  Score=256.29  Aligned_cols=178  Identities=21%  Similarity=0.287  Sum_probs=159.9

Q ss_pred             ceeeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCc
Q 026140           15 IQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDG   91 (243)
Q Consensus        15 ~~~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~   91 (243)
                      |+|||+++++++.+  +++++.+.|+|++|||||||++++||++|++++.|.++. ..+|.++|||++|+|+++|+++++
T Consensus         2 m~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~~   81 (349)
T 4a27_A            2 MEMRAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKG   81 (349)
T ss_dssp             CCEEEEEECSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECTTCCS
T ss_pred             ceeEEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCcCCCCCCCccccceeEEEEEEeCCCCCC
Confidence            78999999999853  889999999999999999999999999999999987643 578999999999999999999999


Q ss_pred             cCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcC
Q 026140           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (243)
Q Consensus        92 ~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip  171 (243)
                      |++||+|+....                              +                   |+|+||++++.++++++|
T Consensus        82 ~~~GdrV~~~~~------------------------------~-------------------G~~aey~~v~~~~~~~iP  112 (349)
T 4a27_A           82 YEIGDRVMAFVN------------------------------Y-------------------NAWAEVVCTPVEFVYKIP  112 (349)
T ss_dssp             CCTTCEEEEECS------------------------------S-------------------CCSBSEEEEEGGGEEECC
T ss_pred             CCCCCEEEEecC------------------------------C-------------------CcceEEEEecHHHeEECC
Confidence            999999975421                              1                   499999999999999999


Q ss_pred             CCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++++++|+++++++.|+|+++.+.+++++|++|||+|+ |++|++++|+|+.+|..+|++++ +++|++.+
T Consensus       113 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~  183 (349)
T 4a27_A          113 DDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAI  183 (349)
T ss_dssp             TTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHH
Confidence            999999999999999999998878899999999999998 99999999999999654888888 55565543

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=2.1e-34  Score=256.32  Aligned_cols=182  Identities=20%  Similarity=0.231  Sum_probs=160.7

Q ss_pred             CCCCceeeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCC
Q 026140           11 AGKPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGE   87 (243)
Q Consensus        11 ~~~~~~~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~   87 (243)
                      ...+.+|||+++.+++.+  +++++++.|.|+++||||||.+++||++|++++.|.++. ..+|.++|||++|+|+++|+
T Consensus        17 ~~~~~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E~~G~V~~vG~   96 (354)
T 2j8z_A           17 NLYFQSMLAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELGP   96 (354)
T ss_dssp             ----CEEEEEEESSCSSGGGEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCCTTSCSSSCSEEEEEEEEECS
T ss_pred             ccchhheeEEEEccCCCccceEEeecCCCCCCCCeEEEEEEEeecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEECC
Confidence            445778999999998863  888999999999999999999999999999999987643 24789999999999999999


Q ss_pred             CC-CccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCc
Q 026140           88 NV-DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH  166 (243)
Q Consensus        88 ~v-~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~  166 (243)
                      ++ ++|++||+|+....                              +                   |+|+||++++.+.
T Consensus        97 ~v~~~~~vGdrV~~~~~------------------------------~-------------------G~~aey~~v~~~~  127 (354)
T 2j8z_A           97 GCQGHWKIGDTAMALLP------------------------------G-------------------GGQAQYVTVPEGL  127 (354)
T ss_dssp             CC--CCCTTCEEEEECS------------------------------S-------------------CCSBSEEEEEGGG
T ss_pred             CcCCCCCCCCEEEEecC------------------------------C-------------------CcceeEEEeCHHH
Confidence            99 99999999975321                              1                   4999999999999


Q ss_pred             EEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          167 VVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       167 ~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++++|+++++++||++++++.|||+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|+++++++++++++
T Consensus       128 ~~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~  203 (354)
T 2j8z_A          128 LMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMA  203 (354)
T ss_dssp             EEECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             cEECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            99999999999999999999999998877889999999999996 9999999999999999 999999998887654

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=3.1e-34  Score=255.62  Aligned_cols=176  Identities=20%  Similarity=0.191  Sum_probs=156.1

Q ss_pred             CceeeeEEeccCCCC---eEEEEEecCCCC--CCeEEEEEeeeecChhhhhhhhCCCCC-CCCC---------eeeecce
Q 026140           14 PIQCRAAIATAPGEP---LVIDEVIVDPPN--SHEVRVRIICTSLCHSDVTFWKMKDFP-AVFP---------RILGHEA   78 (243)
Q Consensus        14 ~~~~ka~~~~~~~~~---~~~~e~~~p~~~--~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p---------~vlG~e~   78 (243)
                      +++|||+++.+++++   +++++++.|.|.  +|||||||++++||++|++++.|.++. ..+|         .++|||+
T Consensus         1 ~~~mka~~~~~~g~~~~~l~~~~~~~P~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~~~~~~~p~~i~G~E~   80 (364)
T 1gu7_A            1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEG   80 (364)
T ss_dssp             CEEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCC
T ss_pred             CceEEEEEeccCCCchheeEEeeccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCCCCCCccccccCcccccCcee
Confidence            478999999999975   889999999887  999999999999999999999987643 2456         8999999


Q ss_pred             eEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeee
Q 026140           79 IGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSE  158 (243)
Q Consensus        79 ~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~  158 (243)
                      +|+|+++|+++++|++||+|+..+.                             .+                   |+|+|
T Consensus        81 ~G~V~~vG~~v~~~~vGdrV~~~~~-----------------------------~~-------------------G~~ae  112 (364)
T 1gu7_A           81 LFEVIKVGSNVSSLEAGDWVIPSHV-----------------------------NF-------------------GTWRT  112 (364)
T ss_dssp             EEEEEEECTTCCSCCTTCEEEESSS-----------------------------CC-------------------CCSBS
T ss_pred             EEEEEEeCCCCCcCCCCCEEEecCC-----------------------------CC-------------------Ccchh
Confidence            9999999999999999999975421                             01                   49999


Q ss_pred             eEEeccCcEEEcCC-----------CCChhhhcccchhhHhHHHHHHHhcCCCCC-CEEEEECC-CHHHHHHHHHHHHcC
Q 026140          159 YTVLDIAHVVKVDP-----------TVPPNRACLLSCGVSTGVGAAWRTANVEVG-STVVIFGL-GSIGLAVAEGARLCG  225 (243)
Q Consensus       159 ~~~v~~~~~~~ip~-----------~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g-~~VlI~Ga-G~vG~~~v~la~~~g  225 (243)
                      |++++.+.++++|+           ++++++||++++++.|||+++.+..++++| ++|||+|+ |++|++++|+|+.+|
T Consensus       113 y~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~G  192 (364)
T 1gu7_A          113 HALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLN  192 (364)
T ss_dssp             EEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHT
T ss_pred             eEecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCC
Confidence            99999999999998           899999999999999999987666789999 99999998 999999999999999


Q ss_pred             CCeEEEEcCCchh
Q 026140          226 ATRIIGVDVISEK  238 (243)
Q Consensus       226 ~~~vi~~~~~~~~  238 (243)
                      + ++|+++++.++
T Consensus       193 a-~vi~~~~~~~~  204 (364)
T 1gu7_A          193 F-NSISVIRDRPN  204 (364)
T ss_dssp             C-EEEEEECCCTT
T ss_pred             C-EEEEEecCccc
Confidence            9 88888766543

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=100.00  E-value=9.6e-34  Score=253.76  Aligned_cols=186  Identities=22%  Similarity=0.219  Sum_probs=158.8

Q ss_pred             CCCCCCceeeeEEeccCCCC--eEE-EEEecCCC-CCCeEEEEEeeeecChhhhhhhhCCCC-------------C--CC
Q 026140            9 KTAGKPIQCRAAIATAPGEP--LVI-DEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDF-------------P--AV   69 (243)
Q Consensus         9 ~~~~~~~~~ka~~~~~~~~~--~~~-~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~-------------~--~~   69 (243)
                      .+...+++|||+++.+++.+  +++ ++++.|.| ++|||||||.+++||++|++++.|..+             .  ..
T Consensus        14 ~~~~~~~~mka~~~~~~g~~~~l~~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~~~~~~~   93 (375)
T 2vn8_A           14 GTENLYFQSMAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEE   93 (375)
T ss_dssp             ----CCCCEEEEEBSSCCSGGGCEEEEEECCCCCCSTTEEEEEEEEEEECHHHHHHHTTTTHHHHHHHHCTTCCSCTTTT
T ss_pred             cccccCccceeEEeccCCCccceEEeccccCCCCCCCCEEEEEEEEEEcCHHHHHHhccCcccccccccccccccccccc
Confidence            45667788999999998754  788 89999985 999999999999999999999987531             1  23


Q ss_pred             CCeeeecceeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeec
Q 026140           70 FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHH  149 (243)
Q Consensus        70 ~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~  149 (243)
                      +|.++|||++|+|+++|+++++|++||+|+..+..                           ..+               
T Consensus        94 ~P~v~G~E~~G~V~~vG~~V~~~~vGDrV~~~~~~---------------------------~~~---------------  131 (375)
T 2vn8_A           94 FPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAVPP---------------------------WKQ---------------  131 (375)
T ss_dssp             CSBCCCCEEEEEEEEECTTCCSCCTTCEEEEECCT---------------------------TSC---------------
T ss_pred             CCcccceeeeEEEEEeCCCCCCCCCCCEEEEecCC---------------------------CCC---------------
Confidence            78999999999999999999999999999865310                           012               


Q ss_pred             ccccceeeeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHHhcC----CCCCCEEEEECC-CHHHHHHHHHHHHc
Q 026140          150 FVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTAN----VEVGSTVVIFGL-GSIGLAVAEGARLC  224 (243)
Q Consensus       150 ~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~----~~~g~~VlI~Ga-G~vG~~~v~la~~~  224 (243)
                          |+|+||++++.+.++++|+++++++||++++.+.|||+++.+.++    +++|++|||+|+ |++|++++|+|+.+
T Consensus       132 ----G~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~  207 (375)
T 2vn8_A          132 ----GTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAW  207 (375)
T ss_dssp             ----CSSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHT
T ss_pred             ----ccceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhC
Confidence                499999999999999999999999999999999999998767788    899999999996 99999999999999


Q ss_pred             CCCeEEEEcCCchhhhcC
Q 026140          225 GATRIIGVDVISEKFEIG  242 (243)
Q Consensus       225 g~~~vi~~~~~~~~~~~~  242 (243)
                      |+ +|++++ +++|++++
T Consensus       208 Ga-~Vi~~~-~~~~~~~~  223 (375)
T 2vn8_A          208 DA-HVTAVC-SQDASELV  223 (375)
T ss_dssp             TC-EEEEEE-CGGGHHHH
T ss_pred             CC-EEEEEe-ChHHHHHH
Confidence            99 899988 56666553

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=5.2e-34  Score=250.73  Aligned_cols=177  Identities=20%  Similarity=0.207  Sum_probs=159.0

Q ss_pred             eeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCC
Q 026140           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (243)
Q Consensus        17 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~   94 (243)
                      |||+++.+++.+  +++++++.|.|+++||||||.+++||++|++++.|.++...+|.++|||++|+|+++|+++++|++
T Consensus         2 Mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~~   81 (327)
T 1qor_A            2 ATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIKA   81 (327)
T ss_dssp             CEEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCCT
T ss_pred             cEEEEEcCCCChhheEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCCCceeEEEEEEECCCCCCCCC
Confidence            899999988754  888999999999999999999999999999999987654568999999999999999999999999


Q ss_pred             CCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC
Q 026140           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (243)
Q Consensus        95 Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~  174 (243)
                      ||+|. ..    +                        ..+                   |+|+||++++.+.++++|+++
T Consensus        82 GdrV~-~~----g------------------------~~~-------------------G~~aey~~v~~~~~~~iP~~l  113 (327)
T 1qor_A           82 GDRVV-YA----Q------------------------SAL-------------------GAYSSVHNIIADKAAILPAAI  113 (327)
T ss_dssp             TCEEE-ES----C------------------------CSS-------------------CCSBSEEEEEGGGEEECCTTS
T ss_pred             CCEEE-EC----C------------------------CCC-------------------ceeeeEEEecHHHcEECCCCC
Confidence            99994 21    0                        001                   399999999999999999999


Q ss_pred             ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++++|+.+++++.|||+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|+++++++++++.+
T Consensus       114 ~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~  181 (327)
T 1qor_A          114 SFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSA  181 (327)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHH
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            999999999999999998776889999999999996 9999999999999999 999999998887654

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=4.7e-34  Score=250.57  Aligned_cols=180  Identities=16%  Similarity=0.093  Sum_probs=156.9

Q ss_pred             eeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccC
Q 026140           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (243)
Q Consensus        17 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~   93 (243)
                      |||+++++++++  +++++++.|+|++|||||||++++||++|++++.|.++. ..+|.++|||++|+|+++|  +++|+
T Consensus         1 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~G--v~~~~   78 (324)
T 3nx4_A            1 MQALILEQQDGKTLASVQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIRHFPMIPGIDFAGTVHASE--DPRFH   78 (324)
T ss_dssp             CEEEEEEESSSSEEEEEEECCGGGSCCCSEEEEEEEEEECHHHHHHHHTCTTCCCSSSBCCCSEEEEEEEEES--STTCC
T ss_pred             CceEEEecCCCCceeeEeecCCCCCCCCEEEEEEEEEeCCHHHHhhhcCCCCCCCCCCccccceeEEEEEEeC--CCCCC
Confidence            799999999986  788999999999999999999999999999999987654 5789999999999999998  57899


Q ss_pred             CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (243)
Q Consensus        94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~  173 (243)
                      +||+|++.+   |.                     .|...+                   |+|+||++++.+.++++|++
T Consensus        79 vGdrV~~~~---~~---------------------~g~~~~-------------------G~~aey~~v~~~~~~~iP~~  115 (324)
T 3nx4_A           79 AGQEVLLTG---WG---------------------VGENHW-------------------GGLAERARVKGDWLVALPAG  115 (324)
T ss_dssp             TTCEEEEEC---TT---------------------BTTTBC-------------------CSSBSEEEECGGGCEECCTT
T ss_pred             CCCEEEEcc---cc---------------------cCCCCC-------------------CceeeEEecCHHHcEECCCC
Confidence            999998753   10                     222223                   49999999999999999999


Q ss_pred             CChhhhcccchhhHhHHHHHH--HhcCCCCCC-EEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          174 VPPNRACLLSCGVSTGVGAAW--RTANVEVGS-TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~--~~~~~~~g~-~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++++||++++.+.|||.++.  ...++++++ +|||+|+ |++|++++|+|+.+|+ +|++++++++|++++
T Consensus       116 ~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~  187 (324)
T 3nx4_A          116 LSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYL  187 (324)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHH
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            999999999999999998765  345566633 4999998 9999999999999999 999999999998765

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=4.9e-34  Score=251.64  Aligned_cols=177  Identities=26%  Similarity=0.289  Sum_probs=155.4

Q ss_pred             eeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCC--CC-CCCCeeeecceeEEEEEeCCCCCc
Q 026140           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD--FP-AVFPRILGHEAIGVVESVGENVDG   91 (243)
Q Consensus        17 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~-~~~p~vlG~e~~G~Vv~vG~~v~~   91 (243)
                      |||+++.+++.+  +++++++.|+|++|||||||.+++||++|++++.|.+  +. ..+|.++|||++|+|+++|+++++
T Consensus         2 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~   81 (333)
T 1wly_A            2 VMAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTD   81 (333)
T ss_dssp             CEEEEESSCSSGGGEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTCCS
T ss_pred             cEEEEEcccCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCCCC
Confidence            899999998754  8889999999999999999999999999999998865  21 357999999999999999999999


Q ss_pred             cCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcC
Q 026140           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (243)
Q Consensus        92 ~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip  171 (243)
                      |++||+|+..+.                             .+                   |+|+||++++.+.++++|
T Consensus        82 ~~~GdrV~~~~~-----------------------------~~-------------------G~~aey~~v~~~~~~~iP  113 (333)
T 1wly_A           82 FTVGERVCTCLP-----------------------------PL-------------------GAYSQERLYPAEKLIKVP  113 (333)
T ss_dssp             CCTTCEEEECSS-----------------------------SC-------------------CCSBSEEEEEGGGCEECC
T ss_pred             CCCCCEEEEecC-----------------------------CC-------------------CcceeEEEecHHHcEeCC
Confidence            999999964321                             01                   499999999999999999


Q ss_pred             CCCChhh--hcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          172 PTVPPNR--ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       172 ~~~~~~~--aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++++++  |+++++++.|||+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|+++++++++++.+
T Consensus       114 ~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~  186 (333)
T 1wly_A          114 KDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETA  186 (333)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            9999999  89999999999998777789999999999997 9999999999999999 999999998887654

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=3.3e-34  Score=254.35  Aligned_cols=181  Identities=19%  Similarity=0.188  Sum_probs=154.6

Q ss_pred             CCceeeeEEec--cC---CCCeEEEEE---------ecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecc
Q 026140           13 KPIQCRAAIAT--AP---GEPLVIDEV---------IVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHE   77 (243)
Q Consensus        13 ~~~~~ka~~~~--~~---~~~~~~~e~---------~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e   77 (243)
                      +|.+|||++++  ++   .+.++++++         +.|+|++|||||||++++||++|++++.|.++. ..+|.++|||
T Consensus         7 ~p~~mka~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E   86 (349)
T 3pi7_A            7 IPSEMKALLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVKGRPAGFE   86 (349)
T ss_dssp             CCSEEEEEEECSCBSCSSCCCSCCCCSTTTEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSSCBCTTSBCCSE
T ss_pred             CchhheEEEEEccccCCCcccceEEEeecccccccCCCCCCCCCeEEEEEEEecCCHHHHHHhcccCCCCCCCCCCccce
Confidence            56789999999  32   223777777         999999999999999999999999999987643 4689999999


Q ss_pred             eeEEEEEeCCCC-CccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeeccccccee
Q 026140           78 AIGVVESVGENV-DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSF  156 (243)
Q Consensus        78 ~~G~Vv~vG~~v-~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~  156 (243)
                      ++|+|+++|+++ ++|++||+|+...                           |...+                   |+|
T Consensus        87 ~~G~V~~vG~~v~~~~~vGdrV~~~~---------------------------g~~~~-------------------G~~  120 (349)
T 3pi7_A           87 GVGTIVAGGDEPYAKSLVGKRVAFAT---------------------------GLSNW-------------------GSW  120 (349)
T ss_dssp             EEEEEEEECSSHHHHHHTTCEEEEEC---------------------------TTSSC-------------------CSS
T ss_pred             EEEEEEEECCCccCCCCCCCEEEEec---------------------------cCCCC-------------------ccc
Confidence            999999999999 9999999998652                           11122                   499


Q ss_pred             eeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCC-CEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 026140          157 SEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVG-STVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  234 (243)
Q Consensus       157 ~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g-~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~  234 (243)
                      +||++++.+.++++|+++++++||.+++...|||. +.+.++ ++| ++|||+|+ |++|++++|+|+.+|+ +|+++++
T Consensus       121 aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~-~~~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~Ga-~Vi~~~~  197 (349)
T 3pi7_A          121 AEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIA-MFDIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEGF-RPIVTVR  197 (349)
T ss_dssp             BSEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHH-HHHHHH-HHCCSEEEESSTTSHHHHHHHHHHHHHTC-EEEEEES
T ss_pred             eeeEeechHHeEECCCCCCHHHHhhccccHHHHHH-HHHHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            99999999999999999999999999999999996 556666 777 68888865 9999999999999999 9999999


Q ss_pred             CchhhhcC
Q 026140          235 ISEKFEIG  242 (243)
Q Consensus       235 ~~~~~~~~  242 (243)
                      +++|++++
T Consensus       198 ~~~~~~~~  205 (349)
T 3pi7_A          198 RDEQIALL  205 (349)
T ss_dssp             CGGGHHHH
T ss_pred             CHHHHHHH
Confidence            99988765

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=100.00  E-value=4.2e-33  Score=248.66  Aligned_cols=177  Identities=19%  Similarity=0.183  Sum_probs=157.3

Q ss_pred             CCceeeeEEeccCCC----CeEE-EEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeC
Q 026140           13 KPIQCRAAIATAPGE----PLVI-DEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVG   86 (243)
Q Consensus        13 ~~~~~ka~~~~~~~~----~~~~-~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG   86 (243)
                      .+.+|||+++.+++.    .+++ +++|.|+|++|||||||.+++||++|++++.|.++. ..+|.++|||++|+|+++|
T Consensus        20 ~~~~MkA~~~~~~g~~~~~~l~~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~i~G~E~~G~V~~vG   99 (362)
T 2c0c_A           20 FQSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALG   99 (362)
T ss_dssp             HCCEEEEEEECSCCSSHHHHEEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHTTTTCTTCCSCEECCSEEEEEEEEEC
T ss_pred             chhhceEEEEeecCCCccceeEEEeecCCCCCCCCeEEEEEEEeccCHHHHHHhcCCCCCCCCCCCCCCceeEEEEEEEC
Confidence            356799999999875    3788 999999999999999999999999999999987643 4689999999999999999


Q ss_pred             CCCC-ccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccC
Q 026140           87 ENVD-GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA  165 (243)
Q Consensus        87 ~~v~-~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~  165 (243)
                      ++++ +|++||+|+...                               +                   |+|+||++++.+
T Consensus       100 ~~V~~~~~vGdrV~~~~-------------------------------~-------------------G~~aey~~v~~~  129 (362)
T 2c0c_A          100 LSASARYTVGQAVAYMA-------------------------------P-------------------GSFAEYTVVPAS  129 (362)
T ss_dssp             TTGGGTCCTTCEEEEEC-------------------------------S-------------------CCSBSEEEEEGG
T ss_pred             CCccCCCCCCCEEEEcc-------------------------------C-------------------CcceeEEEEcHH
Confidence            9999 999999997541                               1                   499999999999


Q ss_pred             cEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          166 HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       166 ~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      .++++|+. + .+++++++++.|||+++.+.+++++|++|||+|+ |++|++++|+++.+|+ +|++++++++|++++
T Consensus       130 ~~~~~P~~-~-~~aaal~~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~  204 (362)
T 2c0c_A          130 IATPVPSV-K-PEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFL  204 (362)
T ss_dssp             GCEECSSS-C-HHHHTTTTHHHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             HeEECCCC-c-hHhhcccchHHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHH
Confidence            99999986 3 4567777899999998878889999999999996 9999999999999999 899999998887654

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=100.00  E-value=3.1e-33  Score=246.07  Aligned_cols=183  Identities=18%  Similarity=0.174  Sum_probs=157.1

Q ss_pred             CceeeeEEeccCCC--CeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCC
Q 026140           14 PIQCRAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVD   90 (243)
Q Consensus        14 ~~~~ka~~~~~~~~--~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~   90 (243)
                      +.+|||+++.+++.  .+++++++.|+|++|||||||++++||++|++++.|.++. ..+|.++|||++|+|+++  +++
T Consensus         2 ~~~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~~--~v~   79 (330)
T 1tt7_A            2 STLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSS--NDP   79 (330)
T ss_dssp             CCEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEEC--SST
T ss_pred             CCcceEEEEecCCCCcceeEeecCCCCCCCCEEEEEEEEEecCHHHHhhhcCCCCCcCCCCccccceEEEEEEEc--CCC
Confidence            56799999999873  3899999999999999999999999999999999886543 357999999999999996  467


Q ss_pred             ccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEc
Q 026140           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (243)
Q Consensus        91 ~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i  170 (243)
                      +|++||+|++.+..                        .|...+                   |+|+||++++.+.++++
T Consensus        80 ~~~vGdrV~~~~~~------------------------~g~~~~-------------------G~~aey~~v~~~~~~~i  116 (330)
T 1tt7_A           80 RFAEGDEVIATSYE------------------------LGVSRD-------------------GGLSEYASVPGDWLVPL  116 (330)
T ss_dssp             TCCTTCEEEEESTT------------------------BTTTBC-------------------CSSBSSEEECGGGEEEC
T ss_pred             CCCCCCEEEEcccc------------------------cCCCCC-------------------ccceeEEEecHHHeEEC
Confidence            89999999865310                        121122                   49999999999999999


Q ss_pred             CCCCChhhhcccchhhHhHHHHHH--HhcCCCCCC-EEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          171 DPTVPPNRACLLSCGVSTGVGAAW--RTANVEVGS-TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       171 p~~~~~~~aa~~~~~~~ta~~~l~--~~~~~~~g~-~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      |+++++++|+++++.+.|+|.++.  ...++++|+ +|||+|+ |++|++++|+|+.+|+ +|++++++++|++++
T Consensus       117 P~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~  191 (330)
T 1tt7_A          117 PQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYL  191 (330)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHH
T ss_pred             CCCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            999999999999999999998654  346788996 9999998 9999999999999999 799999998887754

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.1e-32  Score=242.39  Aligned_cols=182  Identities=16%  Similarity=0.116  Sum_probs=155.7

Q ss_pred             ceeeeEEeccCCC--CeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCc
Q 026140           15 IQCRAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDG   91 (243)
Q Consensus        15 ~~~ka~~~~~~~~--~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~   91 (243)
                      .+|||+++.+++.  .+++++++.|+|++|||||||.+++||++|++++.|.++. ..+|.++|||++|+|+++  ++++
T Consensus         2 ~~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~--~v~~   79 (328)
T 1xa0_A            2 SAFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVSS--QHPR   79 (328)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEEC--CSSS
T ss_pred             CcceEEEEecCCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHhhcCCCCCCCCCCcccCcceEEEEEec--CCCC
Confidence            3699999999884  3788999999999999999999999999999999886532 357899999999999995  5688


Q ss_pred             cCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcC
Q 026140           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (243)
Q Consensus        92 ~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip  171 (243)
                      |++||+|++.+..                        .|...+                   |+|+||++++.+.++++|
T Consensus        80 ~~vGdrV~~~~~~------------------------~g~~~~-------------------G~~aey~~v~~~~~~~~P  116 (328)
T 1xa0_A           80 FREGDEVIATGYE------------------------IGVTHF-------------------GGYSEYARLHGEWLVPLP  116 (328)
T ss_dssp             CCTTCEEEEESTT------------------------BTTTBC-------------------CSSBSEEEECGGGCEECC
T ss_pred             CCCCCEEEEcccc------------------------CCCCCC-------------------ccceeEEEechHHeEECC
Confidence            9999999865310                        121122                   499999999999999999


Q ss_pred             CCCChhhhcccchhhHhHHHHHH--HhcCCCCCC-EEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          172 PTVPPNRACLLSCGVSTGVGAAW--RTANVEVGS-TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~--~~~~~~~g~-~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++++++|+++++.+.|+|.++.  ...++++|+ +|||+|+ |++|++++|+|+.+|+ +|++++++++|++++
T Consensus       117 ~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~  190 (328)
T 1xa0_A          117 KGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYL  190 (328)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHH
T ss_pred             CCCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            99999999999999999998754  346788996 9999998 9999999999999999 799999998887754

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=100.00  E-value=5.8e-33  Score=249.25  Aligned_cols=176  Identities=18%  Similarity=0.212  Sum_probs=155.0

Q ss_pred             CceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC---------------------------
Q 026140           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---------------------------   66 (243)
Q Consensus        14 ~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---------------------------   66 (243)
                      .++|||++.......+++++++.|+|++|||||||++++||++|++++.|.++                           
T Consensus         5 ~~~mka~v~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~~~~~~~   84 (379)
T 3iup_A            5 ALQLRSRIKSSGELELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMRSM   84 (379)
T ss_dssp             EEEEEEEECTTSEEEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCHHHHHHH
T ss_pred             hhhHHHHHhcCCCCceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhcCCccccccccccccccccccccCcccccccc
Confidence            46799998865544589999999999999999999999999999999988521                           


Q ss_pred             --CCCCCeeeecceeEEEEEeCCCC-CccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccC
Q 026140           67 --PAVFPRILGHEAIGVVESVGENV-DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLR  143 (243)
Q Consensus        67 --~~~~p~vlG~e~~G~Vv~vG~~v-~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~  143 (243)
                        ...+|.++|||++|+|+++|++| ++|++||+|+..+                               +         
T Consensus        85 ~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~~-------------------------------~---------  124 (379)
T 3iup_A           85 AGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIG-------------------------------G---------  124 (379)
T ss_dssp             GGGTTEEEECCSCEEEEEEEECSSHHHHTTTTCEEEECC-------------------------------S---------
T ss_pred             ccccCCCccceeeeEEEEEEeCCCcccCCCCCCEEEecC-------------------------------C---------
Confidence              23578999999999999999999 8999999997642                               1         


Q ss_pred             CceeecccccceeeeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEE--CCCHHHHHHHHHH
Q 026140          144 GETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF--GLGSIGLAVAEGA  221 (243)
Q Consensus       144 ~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~--GaG~vG~~~v~la  221 (243)
                                |+|+||++++.+.++++|+++++++|+.+++...|||++ ++... ++|++|||+  |+|++|++++|+|
T Consensus       125 ----------G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~-~~~~~-~~g~~vlV~gag~G~vG~~a~q~a  192 (379)
T 3iup_A          125 ----------AMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGM-VETMR-LEGHSALVHTAAASNLGQMLNQIC  192 (379)
T ss_dssp             ----------CCSBSEEEEEGGGEEECCTTCCHHHHTTSSHHHHHHHHH-HHHHH-HTTCSCEEESSTTSHHHHHHHHHH
T ss_pred             ----------CcceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHH-HHHhc-cCCCEEEEECCCCCHHHHHHHHHH
Confidence                      499999999999999999999999999999999999975 45555 899999999  4599999999999


Q ss_pred             HHcCCCeEEEEcCCchhhhcC
Q 026140          222 RLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       222 ~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +.+|+ +|++++++++|++++
T Consensus       193 ~~~Ga-~Vi~~~~~~~~~~~~  212 (379)
T 3iup_A          193 LKDGI-KLVNIVRKQEQADLL  212 (379)
T ss_dssp             HHHTC-CEEEEESSHHHHHHH
T ss_pred             HHCCC-EEEEEECCHHHHHHH
Confidence            99999 899999999998765

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=99.98  E-value=2.5e-31  Score=234.44  Aligned_cols=172  Identities=23%  Similarity=0.208  Sum_probs=151.1

Q ss_pred             ceeeeEEeccC------CCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecc----eeEEEEE
Q 026140           15 IQCRAAIATAP------GEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE----AIGVVES   84 (243)
Q Consensus        15 ~~~ka~~~~~~------~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e----~~G~Vv~   84 (243)
                      ++||||++++.      .+.++++++|.|+|++|||||||++++||++|...+.+.... .+|.++|||    ++|+|++
T Consensus         6 ~~mka~v~~~~~~g~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~d~~~~~~~~~~-~~p~~~G~e~g~~~~G~V~~   84 (336)
T 4b7c_A            6 QINRQYQLAQRPSGLPGRDTFSFVETPLGEPAEGQILVKNEYLSLDPAMRGWMNDARSY-IPPVGIGEVMRALGVGKVLV   84 (336)
T ss_dssp             CEEEEEEECSCCSSSCCTTSEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHHSCSCCS-SCCCCTTSBCCCEEEEEEEE
T ss_pred             ccccEEEEEecCCCCCCCCceEEEeccCCCCCCCEEEEEEEEEEeCHHHHhhhhccccc-CCCCCCCcccCCceEEEEEe
Confidence            67999999861      233999999999999999999999999999999888764332 457777777    8999999


Q ss_pred             eCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEecc
Q 026140           85 VGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI  164 (243)
Q Consensus        85 vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~  164 (243)
                      .  ++++|++||+|+..                                                    |+|+||++++.
T Consensus        85 ~--~v~~~~vGdrV~~~----------------------------------------------------G~~aey~~v~~  110 (336)
T 4b7c_A           85 S--KHPGFQAGDYVNGA----------------------------------------------------LGVQDYFIGEP  110 (336)
T ss_dssp             E--CSTTCCTTCEEEEE----------------------------------------------------CCSBSEEEECC
T ss_pred             c--CCCCCCCCCEEecc----------------------------------------------------CCceEEEEech
Confidence            4  58899999999742                                                    38999999999


Q ss_pred             CcEEEcCCCCChhhh--cccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          165 AHVVKVDPTVPPNRA--CLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       165 ~~~~~ip~~~~~~~a--a~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +.++++|+++++.++  +.+++++.|||+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|++++++++++++
T Consensus       111 ~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~  189 (336)
T 4b7c_A          111 KGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRF  189 (336)
T ss_dssp             TTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHH
T ss_pred             HHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            999999999987776  7788899999998878899999999999998 9999999999999999 99999999988775


Q ss_pred             C
Q 026140          242 G  242 (243)
Q Consensus       242 ~  242 (243)
                      +
T Consensus       190 ~  190 (336)
T 4b7c_A          190 L  190 (336)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=99.97  E-value=6.1e-31  Score=233.92  Aligned_cols=177  Identities=19%  Similarity=0.290  Sum_probs=152.9

Q ss_pred             CCCceeeeEEe-ccC---CC----CeEEEEEecCCC-CCCeEEEEEeeeecChhhhhhhhC----CCC-CCCCCeeeecc
Q 026140           12 GKPIQCRAAIA-TAP---GE----PLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKM----KDF-PAVFPRILGHE   77 (243)
Q Consensus        12 ~~~~~~ka~~~-~~~---~~----~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g----~~~-~~~~p~vlG~e   77 (243)
                      .+|++|||+++ ..+   +.    .+++++++.|.| ++|||||||.+++||++|+..+.+    .+. ...+|.++|||
T Consensus         4 ~~~~~mka~v~~~~~~~~g~p~~~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~~~~g~~~~~~~~~p~v~G~E   83 (357)
T 2zb4_A            4 AAAMIVQRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGG   83 (357)
T ss_dssp             --CCEEEEEEECCCCCTTSCCCGGGEEEEEEECCSCCCTTEEEEEEEEEECCTTHHHHTSSSCSSSSSCCCCBTSBCEEE
T ss_pred             cccccceEEEEeccCCCCCCCCcCceEEEeecCCCCCCCCeEEEEEEEEecCHHHHhhccccccccccCCCCCCcccccc
Confidence            35689999999 565   32    399999999999 999999999999999999987765    232 34678999999


Q ss_pred             eeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceee
Q 026140           78 AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFS  157 (243)
Q Consensus        78 ~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~  157 (243)
                      ++|+|++  +++++|++||+|+...                                                   |+|+
T Consensus        84 ~~G~V~~--~~v~~~~vGdrV~~~~---------------------------------------------------G~~a  110 (357)
T 2zb4_A           84 GIGIIEE--SKHTNLTKGDFVTSFY---------------------------------------------------WPWQ  110 (357)
T ss_dssp             EEEEEEE--ECSTTCCTTCEEEEEE---------------------------------------------------EESB
T ss_pred             EEEEEEe--cCCCCCCCCCEEEecC---------------------------------------------------CCcE
Confidence            9999999  8899999999997531                                                   4899


Q ss_pred             eeEEeccCcEEEcCCCC-----ChhhhcccchhhHhHHHHHHHhcCCCCC--CEEEEECC-CHHHHHHHHHHHHcCCCeE
Q 026140          158 EYTVLDIAHVVKVDPTV-----PPNRACLLSCGVSTGVGAAWRTANVEVG--STVVIFGL-GSIGLAVAEGARLCGATRI  229 (243)
Q Consensus       158 ~~~~v~~~~~~~ip~~~-----~~~~aa~~~~~~~ta~~~l~~~~~~~~g--~~VlI~Ga-G~vG~~~v~la~~~g~~~v  229 (243)
                      ||++++.++++++|+++     +++ ++.+++++.|||+++.+..++++|  ++|||+|+ |++|++++|+++.+|+.+|
T Consensus       111 ey~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~V  189 (357)
T 2zb4_A          111 TKVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRV  189 (357)
T ss_dssp             SEEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEE
T ss_pred             EEEEEchHHceecCcccccCchhHH-HHhcccHHHHHHHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeE
Confidence            99999999999999998     555 677888999999988788999999  99999998 9999999999999999789


Q ss_pred             EEEcCCchhhhcC
Q 026140          230 IGVDVISEKFEIG  242 (243)
Q Consensus       230 i~~~~~~~~~~~~  242 (243)
                      +++++++++++.+
T Consensus       190 i~~~~~~~~~~~~  202 (357)
T 2zb4_A          190 VGICGTHEKCILL  202 (357)
T ss_dssp             EEEESCHHHHHHH
T ss_pred             EEEeCCHHHHHHH
Confidence            9999998876643

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=99.97  E-value=5.4e-31  Score=229.20  Aligned_cols=164  Identities=21%  Similarity=0.264  Sum_probs=147.6

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVEG   95 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~~G   95 (243)
                      |||+++.+++++..+++++.|+|+++||||||.+++||++|++++.|.++. ..+|.++|||++|+|+           |
T Consensus         1 Mka~~~~~~g~~~~l~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~-----------G   69 (302)
T 1iz0_A            1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVVE-----------G   69 (302)
T ss_dssp             CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEET-----------T
T ss_pred             CeEEEEcCCCCchheEECCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcccceEEEEEE-----------C
Confidence            799999999986567789999999999999999999999999999986643 3679999999999997           9


Q ss_pred             CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCC
Q 026140           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (243)
Q Consensus        96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~  175 (243)
                      |+|+....                              +                   |+|+||++++.+.++++|++++
T Consensus        70 drV~~~~~------------------------------~-------------------G~~aey~~v~~~~~~~iP~~~~  100 (302)
T 1iz0_A           70 RRYAALVP------------------------------Q-------------------GGLAERVAVPKGALLPLPEGLS  100 (302)
T ss_dssp             EEEEEECS------------------------------S-------------------CCSBSEEEEEGGGCEECCTTCC
T ss_pred             cEEEEecC------------------------------C-------------------cceeeEEEEcHHHcEeCCCCCC
Confidence            99976421                              1                   4999999999999999999999


Q ss_pred             hhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++||++++++.|||+++.+.. +++|++|||+|+ |++|++++|+++.+|+ +|++++++++|++++
T Consensus       101 ~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~  166 (302)
T 1iz0_A          101 PEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALP  166 (302)
T ss_dssp             HHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            9999999999999999887677 999999999998 9999999999999999 999999999887654

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=99.96  E-value=9.8e-29  Score=217.59  Aligned_cols=171  Identities=16%  Similarity=0.144  Sum_probs=145.9

Q ss_pred             CCceeeeEEeccC--C----CCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeC
Q 026140           13 KPIQCRAAIATAP--G----EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVG   86 (243)
Q Consensus        13 ~~~~~ka~~~~~~--~----~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG   86 (243)
                      .+++||||++.+.  +    +.+++++++.|+|++|||||||.+++||+.|..+ .   ....+|.++|||++|+|++. 
T Consensus         4 ~~~~mka~~~~~~~~g~~~~~~l~~~e~~~P~~~~~eVlVkv~a~gi~~~~~~~-~---~~~~~p~~~g~e~~G~Vv~~-   78 (333)
T 1v3u_A            4 FMVKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIA-S---KRLKEGAVMMGQQVARVVES-   78 (333)
T ss_dssp             CCCEEEEEEECC-----CCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHH-T---TTCCTTSBCCCCEEEEEEEE-
T ss_pred             ccccccEEEEeecCCCCCCccceEEEeCCCCCCCCCEEEEEEEEeccCHHHccc-c---CcCCCCcccccceEEEEEec-
Confidence            4578999999985  3    2388999999999999999999999999988732 2   12356789999999999995 


Q ss_pred             CCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCc
Q 026140           87 ENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH  166 (243)
Q Consensus        87 ~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~  166 (243)
                       ++++|++||+|+..                                                    |+|+||++++.+.
T Consensus        79 -~v~~~~vGdrV~~~----------------------------------------------------g~~aey~~v~~~~  105 (333)
T 1v3u_A           79 -KNSAFPAGSIVLAQ----------------------------------------------------SGWTTHFISDGKG  105 (333)
T ss_dssp             -SCTTSCTTCEEEEC----------------------------------------------------CCSBSEEEESSTT
T ss_pred             -CCCCCCCCCEEEec----------------------------------------------------CceEEEEEechHH
Confidence             57889999999742                                                    3899999999999


Q ss_pred             EEEcCCC----CChhh-hcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          167 VVKVDPT----VPPNR-ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       167 ~~~ip~~----~~~~~-aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ++++|++    +++++ ++++++++.|||+++.+..++++|++|||+|+ |++|++++++++..|+ +|+++++++++++
T Consensus       106 ~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~  184 (333)
T 1v3u_A          106 LEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIA  184 (333)
T ss_dssp             EEECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHH
T ss_pred             eEEcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            9999997    88887 47888899999998878889999999999998 9999999999999999 9999999988776


Q ss_pred             cC
Q 026140          241 IG  242 (243)
Q Consensus       241 ~~  242 (243)
                      .+
T Consensus       185 ~~  186 (333)
T 1v3u_A          185 YL  186 (333)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.96  E-value=1.1e-28  Score=239.89  Aligned_cols=170  Identities=24%  Similarity=0.253  Sum_probs=148.7

Q ss_pred             eeEEeccCCCC--eEEEEEec--CCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccC
Q 026140           18 RAAIATAPGEP--LVIDEVIV--DPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVV   93 (243)
Q Consensus        18 ka~~~~~~~~~--~~~~e~~~--p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~   93 (243)
                      ..+.+..+|.+  +++++.+.  |+|++|||+|||.+++||++|++++.|.++   .|.++|||++|+|+++|++|++|+
T Consensus       211 ~~l~~~~~G~~~~L~~~~~~~p~~~~~~~eVlV~V~a~gin~~D~~~~~G~~~---~~~~lG~E~aG~V~~vG~~V~~~~  287 (795)
T 3slk_A          211 WRLEATRPGSLDGLALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYP---GVASLGSEGAGVVVETGPGVTGLA  287 (795)
T ss_dssp             CCEEESSTTSSTTEEECCCHHHHSCCCSSEEEEEEEEEEECHHHHHHTTTCCS---SCCCSCCCEEEEEEEECSSCCSSC
T ss_pred             EEEecCCCCCccceEEEeCCccCCCCCCCEEEEEEEEEccCHHHHHHHcCCCC---CCccccceeEEEEEEeCCCCCcCC
Confidence            44666777754  77777664  568999999999999999999999988754   356799999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (243)
Q Consensus        94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~  173 (243)
                      +||+|+...                               .                   |+|++|++++.+.++++|++
T Consensus       288 vGDrV~~~~-------------------------------~-------------------G~~ae~~~v~~~~~~~iP~~  317 (795)
T 3slk_A          288 PGDRVMGMI-------------------------------P-------------------KAFGPLAVADHRMVTRIPAG  317 (795)
T ss_dssp             TTCEEEECC-------------------------------S-------------------SCSSSEEEEETTSEEECCTT
T ss_pred             CCCEEEEEe-------------------------------c-------------------CCCcCEEEeehHHEEECCCC
Confidence            999997531                               1                   48999999999999999999


Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++++|+.+++.+.|+|+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++ |.+.+
T Consensus       318 ls~~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga-~V~~t~~~~-k~~~l  385 (795)
T 3slk_A          318 WSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGA-EVYATASED-KWQAV  385 (795)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTBHHHHHHHHHHHHTTC-CEEEECCGG-GGGGS
T ss_pred             CCHHHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeChH-Hhhhh
Confidence            9999999999999999998888899999999999997 9999999999999999 899999766 55443

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=99.96  E-value=5.1e-28  Score=213.88  Aligned_cols=174  Identities=18%  Similarity=0.166  Sum_probs=143.4

Q ss_pred             CceeeeEEeccC-----CC-CeEEE--EEecCC-CCCCeEEEEEeeeecChhhhhhhhCCCCC----CCCCeeeecceeE
Q 026140           14 PIQCRAAIATAP-----GE-PLVID--EVIVDP-PNSHEVRVRIICTSLCHSDVTFWKMKDFP----AVFPRILGHEAIG   80 (243)
Q Consensus        14 ~~~~ka~~~~~~-----~~-~~~~~--e~~~p~-~~~~eVlVkv~~~~i~~~D~~~~~g~~~~----~~~p~vlG~e~~G   80 (243)
                      |++||++++...     +. .++++  +++.|. |++|||||||.++++|+.|. .+.|.+..    ..+|.++|||++|
T Consensus         2 ~~~mka~~m~a~~~~~p~~~~l~~~~~~~~~P~~~~~~eVlVkv~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G~e~~G   80 (345)
T 2j3h_A            2 TATNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMR-IRMGKPDPSTAALAQAYTPGQPIQG   80 (345)
T ss_dssp             EEEEEEEEECSCBSSSCCGGGEEEEEEEEECCSCSSSSCEEEEECEEECCTTHH-HHHBC---------CCCCTTSBCEE
T ss_pred             CccceEEEEecCCCCCCCccceeEEEeecCCCCCCCCCEEEEEEEEecCCHHHH-hhcccCCCCccccCCCcCCCCeeec
Confidence            456777776654     42 38887  888887 89999999999999988874 45554322    2468999999999


Q ss_pred             EEEE--eCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeee
Q 026140           81 VVES--VGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSE  158 (243)
Q Consensus        81 ~Vv~--vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~  158 (243)
                      ++++  +|+++++|++||+|+..                                                    |+|+|
T Consensus        81 ~~~~GvV~~~v~~~~vGdrV~~~----------------------------------------------------g~~ae  108 (345)
T 2j3h_A           81 YGVSRIIESGHPDYKKGDLLWGI----------------------------------------------------VAWEE  108 (345)
T ss_dssp             EEEEEEEEECSTTCCTTCEEEEE----------------------------------------------------EESBS
T ss_pred             ceEEEEEecCCCCCCCCCEEEee----------------------------------------------------cCcee
Confidence            9999  99999999999999742                                                    38999


Q ss_pred             eEEeccCc--EEEcCC---CCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEE
Q 026140          159 YTVLDIAH--VVKVDP---TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV  232 (243)
Q Consensus       159 ~~~v~~~~--~~~ip~---~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~  232 (243)
                      |++++.+.  ++++|+   +++++ ++++++++.|||+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|+++
T Consensus       109 y~~v~~~~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~  186 (345)
T 2j3h_A          109 YSVITPMTHAHFKIQHTDVPLSYY-TGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGS  186 (345)
T ss_dssp             EEEECCCTTTCEEECCCSSCTTGG-GTTTSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEE
T ss_pred             EEEecccccceeecCCCCCCHHHH-HHhccccHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEE
Confidence            99998876  999996   35555 67788899999998777889999999999998 9999999999999999 99999


Q ss_pred             cCCchhhhcC
Q 026140          233 DVISEKFEIG  242 (243)
Q Consensus       233 ~~~~~~~~~~  242 (243)
                      ++++++++++
T Consensus       187 ~~~~~~~~~~  196 (345)
T 2j3h_A          187 AGSKEKVDLL  196 (345)
T ss_dssp             ESSHHHHHHH
T ss_pred             eCCHHHHHHH
Confidence            9998887654

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.80  E-value=9.4e-20  Score=193.87  Aligned_cols=154  Identities=19%  Similarity=0.077  Sum_probs=129.8

Q ss_pred             eEEEEEecCC-CC--CCeEEEEEeeeecChhhhhhhhCCCCCC-------CCCeeeecceeEEEEEeCCCCCccCCCCEE
Q 026140           29 LVIDEVIVDP-PN--SHEVRVRIICTSLCHSDVTFWKMKDFPA-------VFPRILGHEAIGVVESVGENVDGVVEGDVV   98 (243)
Q Consensus        29 ~~~~e~~~p~-~~--~~eVlVkv~~~~i~~~D~~~~~g~~~~~-------~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~V   98 (243)
                      +...+.+... +.  ++||+|||.++++|+.|+.++.|.++..       ..|.++|+|++|+|.          +||+|
T Consensus      1544 l~~~~~~~~~~~~l~~~eVlVkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V~----------vGdrV 1613 (2512)
T 2vz8_A         1544 IRWVCSPLHYALPASCQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRDA----------SGRRV 1613 (2512)
T ss_dssp             EEEEECTTTTCCCHHHHTTEEEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEET----------TSCCE
T ss_pred             eEEEecCcccccCCCCCceEEEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEEc----------cCCEE
Confidence            4444444332 22  7899999999999999999998865421       245789999999882          79999


Q ss_pred             EeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCChhh
Q 026140           99 IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR  178 (243)
Q Consensus        99 v~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~  178 (243)
                      +....                              .                   |+|++|++++.+.++++|+++++++
T Consensus      1614 ~g~~~------------------------------~-------------------G~~Aeyv~vp~~~v~~iPd~ls~~e 1644 (2512)
T 2vz8_A         1614 MGMVP------------------------------A-------------------EGLATSVLLLQHATWEVPSTWTLEE 1644 (2512)
T ss_dssp             EEECS------------------------------S-------------------CCSBSEEECCGGGEEECCTTSCHHH
T ss_pred             EEeec------------------------------C-------------------CceeeEEEcccceEEEeCCCCCHHH
Confidence            64321                              1                   3899999999999999999999999


Q ss_pred             hcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       179 aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ||.+++.+.|+|+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|++++++++|.+.+
T Consensus      1645 AA~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga-~Viat~~s~~k~~~l 1708 (2512)
T 2vz8_A         1645 AASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGC-RVFTTVGSAEKRAYL 1708 (2512)
T ss_dssp             HTTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHHcCC-EEEEEeCChhhhHHH
Confidence            99999999999999888889999999999987 9999999999999999 899999988887653

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.20  E-value=9.2e-12  Score=100.90  Aligned_cols=76  Identities=25%  Similarity=0.313  Sum_probs=58.9

Q ss_pred             CcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       165 ~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ++++++|+++++++|+++++++.|+|+++.+..++++|++|+|+|+ |++|++++++++..|+ +|+++++++++.+.
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~   78 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREM   78 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHH
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence            4678999999999999999999999998777788999999999996 9999999999999999 89999999887654

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.53  E-value=8.8e-08  Score=79.43  Aligned_cols=114  Identities=11%  Similarity=0.032  Sum_probs=75.4

Q ss_pred             cCCCCEEEeec-------cCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEecc
Q 026140           92 VVEGDVVIPHF-------LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI  164 (243)
Q Consensus        92 ~~~Gd~Vv~~~-------~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~  164 (243)
                      +++||+|++.+       ...|++|.+|+.|..++|+..-.       ..|                   +..      .
T Consensus         4 ~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~g~-------~~G-------------------~~~------~   51 (248)
T 2yvl_A            4 FKEGEYVLIRFGEKKFLRKLLPKQSLSVKKSVLKFDEVIGK-------PEG-------------------VKI------N   51 (248)
T ss_dssp             CCTTCEEEEEETTEEEEEECCTTCEEEETTEEEEGGGTTTC-------CTT-------------------EEE------T
T ss_pred             CCCCCEEEEEeCCeEEEEEEcCCCEEecCCceEEHHHhcCC-------CCC-------------------CEE------E
Confidence            89999999988       77889999998888877754311       011                   222      2


Q ss_pred             CcEEEcCCCCChhhhcc-----cchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          165 AHVVKVDPTVPPNRACL-----LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       165 ~~~~~ip~~~~~~~aa~-----~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                      ...++.|+.....+.+.     +..+...+ . +....++.++++||.+|+| .|..+..+++. +. ++++++.+++.+
T Consensus        52 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~vldiG~G-~G~~~~~l~~~-~~-~v~~vD~~~~~~  126 (248)
T 2yvl_A           52 GFEVYRPTLEEIILLGFERKTQIIYPKDSF-Y-IALKLNLNKEKRVLEFGTG-SGALLAVLSEV-AG-EVWTFEAVEEFY  126 (248)
T ss_dssp             TEEEECCCHHHHHHHTSCCSSCCCCHHHHH-H-HHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEECSCHHHH
T ss_pred             EEEEeCCCHHHHHHhcCcCCCCcccchhHH-H-HHHhcCCCCCCEEEEeCCC-ccHHHHHHHHh-CC-EEEEEecCHHHH
Confidence            34444443322221111     11122222 2 4567788999999999998 58888888888 66 999999998876


Q ss_pred             hcC
Q 026140          240 EIG  242 (243)
Q Consensus       240 ~~~  242 (243)
                      +.+
T Consensus       127 ~~a  129 (248)
T 2yvl_A          127 KTA  129 (248)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.05  E-value=1.9e-08  Score=90.64  Aligned_cols=127  Identities=16%  Similarity=0.159  Sum_probs=94.0

Q ss_pred             eeeecceeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeeccc
Q 026140           72 RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFV  151 (243)
Q Consensus        72 ~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~  151 (243)
                      ...|++.++.|..+|++++.+.+|+.++.-+...                        +                +....
T Consensus        75 ~~~g~~a~~~i~~v~~Glds~~vGe~~Il~qvk~------------------------~----------------~~~~~  114 (404)
T 1gpj_A           75 VKRGSEAVRHLFRVASGLESMMVGEQEILRQVKK------------------------A----------------YDRAA  114 (404)
T ss_dssp             EEEHHHHHHHHHHHHTTTTSSSTTCHHHHHHHHH------------------------H----------------HHHHH
T ss_pred             eecCchHhhhheeeccCCCCCcCCcchhHHHHHH------------------------H----------------HHHHH
Confidence            4689999999999999999999999874321100                        0                00001


Q ss_pred             ccceeeeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHHhc---CCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Q 026140          152 SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA---NVEVGSTVVIFGLGSIGLAVAEGARLCGATR  228 (243)
Q Consensus       152 ~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~---~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~  228 (243)
                      ..|++++|+......++++|+.++.+.++.. .+..++|.++....   ...+|++|+|+|+|.+|.++++.++.+|+.+
T Consensus       115 ~~G~~~~~~~~~~~~a~~~~k~v~~~~~~~~-~~~s~a~~av~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~  193 (404)
T 1gpj_A          115 RLGTLDEALKIVFRRAINLGKRAREETRISE-GAVSIGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRA  193 (404)
T ss_dssp             HHTCCCHHHHHHHHHHHHHHHHHHHHSSTTC-SCCSHHHHHHHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSE
T ss_pred             HcCCchHHHHHHHHHHhhhhccCcchhhhcC-CCccHHHHHHHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCE
Confidence            1146778877777888888888877776553 36667776543211   2358999999999999999999999999988


Q ss_pred             EEEEcCCchhh
Q 026140          229 IIGVDVISEKF  239 (243)
Q Consensus       229 vi~~~~~~~~~  239 (243)
                      |++++++.+|.
T Consensus       194 V~v~~r~~~ra  204 (404)
T 1gpj_A          194 VLVANRTYERA  204 (404)
T ss_dssp             EEEECSSHHHH
T ss_pred             EEEEeCCHHHH
Confidence            99999998775

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.93  E-value=0.0021  Score=49.22  Aligned_cols=45  Identities=27%  Similarity=0.341  Sum_probs=38.1

Q ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       197 ~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ....++++|+|+|+|.+|+.+++.++..|. +|+++++++++.+.+
T Consensus        14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~   58 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRL   58 (155)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGS
T ss_pred             hcccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHH
Confidence            335678899999999999999999999999 999999998887654

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=96.71  E-value=0.0015  Score=57.60  Aligned_cols=41  Identities=29%  Similarity=0.291  Sum_probs=37.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++++|+|+|+|++|+++++.++.+|+ +|++++++++|++.+
T Consensus       166 ~~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~  206 (361)
T 1pjc_A          166 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYL  206 (361)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHH
Confidence            35899999999999999999999999 999999998887643

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=96.65  E-value=0.0016  Score=54.71  Aligned_cols=49  Identities=22%  Similarity=0.288  Sum_probs=39.0

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCchhhhcC
Q 026140          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIG  242 (243)
Q Consensus       193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g-~~~vi~~~~~~~~~~~~  242 (243)
                      +.....+.++++||-+|+|. |..+..+++..+ ..+|++++.+++.++.+
T Consensus       104 i~~~~~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a  153 (277)
T 1o54_A          104 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLA  153 (277)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHH
Confidence            45667889999999999877 888888888853 34999999988776543

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=96.64  E-value=0.0018  Score=57.44  Aligned_cols=40  Identities=30%  Similarity=0.454  Sum_probs=36.5

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ++++|+|+|+|.+|++++++++.+|+ +|+++++++++++.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~~~d~~~~~~~~  210 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQ  210 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            68999999999999999999999999 89999999877543

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=96.63  E-value=0.0025  Score=56.96  Aligned_cols=40  Identities=30%  Similarity=0.327  Sum_probs=36.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ++++|+|+|+|.+|+.++++++.+|+ +|++++++.++++.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~~~~~~  210 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQ  210 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCGGGHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHH
Confidence            58999999999999999999999999 89999999887653

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=96.60  E-value=0.0035  Score=57.58  Aligned_cols=54  Identities=22%  Similarity=0.247  Sum_probs=43.3

Q ss_pred             HhHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          187 STGVGAAWRTA-NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       187 ~ta~~~l~~~~-~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      .+.|.++.+.. ...+|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+.+.
T Consensus       258 ~s~~~g~~r~~~~~l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~~~~~~  312 (494)
T 3ce6_A          258 HSLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDPINALQ  312 (494)
T ss_dssp             HHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHH
T ss_pred             hhhhHHHHhccCCCCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            44455432222 26899999999999999999999999999 99999999887643

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=96.55  E-value=0.0022  Score=56.87  Aligned_cols=41  Identities=27%  Similarity=0.333  Sum_probs=37.2

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      -+|++|+|+|+|.+|+.+++.++.+|+ +|+++++++++++.
T Consensus       166 l~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~  206 (377)
T 2vhw_A          166 VEPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQ  206 (377)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHH
Confidence            368999999999999999999999999 99999999887653

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=96.44  E-value=0.0029  Score=56.13  Aligned_cols=40  Identities=30%  Similarity=0.439  Sum_probs=37.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ++.+|+|+|+|.+|+.+++.++.+|+ +|++++++.++++.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~  222 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRPEVAEQ  222 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSGGGHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            67999999999999999999999999 89999999987654

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=96.39  E-value=0.0033  Score=56.21  Aligned_cols=40  Identities=28%  Similarity=0.359  Sum_probs=36.9

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ++.+|+|+|+|.+|+.++++++.+|+ +|++.++++++++.
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~  228 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRPAAKEQ  228 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSTTHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHH
Confidence            67899999999999999999999999 99999999987654

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=96.29  E-value=0.0047  Score=54.44  Aligned_cols=40  Identities=30%  Similarity=0.407  Sum_probs=36.4

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ++++|+|+|+|.+|+.+++.++.+|+ +|+++++++++++.
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~  204 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQY  204 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHH
Confidence            46899999999999999999999999 99999999887653

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=96.20  E-value=0.0069  Score=52.36  Aligned_cols=49  Identities=22%  Similarity=0.342  Sum_probs=38.0

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCchhhhcC
Q 026140          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIG  242 (243)
Q Consensus       193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~-~~vi~~~~~~~~~~~~  242 (243)
                      +.....+.+|++||-+|.|. |..+..+++..|. .+|++++.++..++.+
T Consensus        97 ~l~~l~~~~g~~VLDiG~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a  146 (336)
T 2b25_A           97 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLA  146 (336)
T ss_dssp             HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHH
Confidence            34556789999999999876 7777788887663 4899999998766543

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.06  E-value=0.0071  Score=43.30  Aligned_cols=40  Identities=15%  Similarity=0.208  Sum_probs=34.9

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCchhhhc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEI  241 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g-~~~vi~~~~~~~~~~~  241 (243)
                      .+.+|+|+|+|.+|..+++.+...| . +|+++++++++.+.
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~-~v~~~~r~~~~~~~   44 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNY-SVTVADHDLAALAV   44 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSE-EEEEEESCHHHHHH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCc-eEEEEeCCHHHHHH
Confidence            4578999999999999999999999 6 89999999887653

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=95.94  E-value=0.0022  Score=48.52  Aligned_cols=52  Identities=10%  Similarity=0.033  Sum_probs=39.8

Q ss_pred             HhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       187 ~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ++++.++ +......+++|+|+|+|.+|..+++.++..|+ +|++.+++.++.+
T Consensus         7 sv~~~a~-~~~~~~~~~~v~iiG~G~iG~~~a~~l~~~g~-~v~v~~r~~~~~~   58 (144)
T 3oj0_A            7 SIPSIVY-DIVRKNGGNKILLVGNGMLASEIAPYFSYPQY-KVTVAGRNIDHVR   58 (144)
T ss_dssp             SHHHHHH-HHHHHHCCCEEEEECCSHHHHHHGGGCCTTTC-EEEEEESCHHHHH
T ss_pred             cHHHHHH-HHHHhccCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCHHHHH
Confidence            3444443 23333448999999999999999999888999 5999999987754

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=95.53  E-value=0.029  Score=50.50  Aligned_cols=40  Identities=18%  Similarity=0.261  Sum_probs=36.5

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                      ...|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+.
T Consensus       217 ~L~GktV~ViG~G~IGk~vA~~Lra~Ga-~Viv~D~dp~ra  256 (435)
T 3gvp_A          217 MFGGKQVVVCGYGEVGKGCCAALKAMGS-IVYVTEIDPICA  256 (435)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHH
T ss_pred             eecCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEeCChhhh
Confidence            5689999999999999999999999999 899999887654

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=95.37  E-value=0.039  Score=46.83  Aligned_cols=42  Identities=24%  Similarity=0.253  Sum_probs=37.1

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ...+++++|+|+|++|.+++..+...|+.+|++++|+.+|.+
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~  165 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQ  165 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHH
Confidence            456899999999999999999998999978999999988754

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=95.36  E-value=0.034  Score=50.77  Aligned_cols=40  Identities=25%  Similarity=0.358  Sum_probs=36.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      -.|++++|.|+|++|.++++.++.+|+ +|+++++++.+..
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~~~~a~  302 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEIDPICAL  302 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHH
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHH
Confidence            589999999999999999999999999 9999999876643

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=95.26  E-value=0.031  Score=45.28  Aligned_cols=40  Identities=15%  Similarity=0.133  Sum_probs=34.7

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..+++|||.|+ |.+|..++..+...|+ +|+++++++++.+
T Consensus        19 l~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~   59 (236)
T 3e8x_A           19 FQGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNEEQGP   59 (236)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHH
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECChHHHH
Confidence            45789999998 9999999999999999 9999999987754

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=95.22  E-value=0.024  Score=48.19  Aligned_cols=40  Identities=28%  Similarity=0.402  Sum_probs=36.4

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                      --.|++|+|+|.|.+|..+++.++.+|+ +|++.+++.++.
T Consensus       152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~~~~~  191 (293)
T 3d4o_A          152 TIHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARESDLL  191 (293)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHH
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECCHHHH
Confidence            4578999999999999999999999999 999999987664

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.18  E-value=0.02  Score=42.95  Aligned_cols=40  Identities=10%  Similarity=0.282  Sum_probs=35.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ..++|+|+|.|.+|..+++.++..|. .|+++++++++.+.
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~   45 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDE   45 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHH
Confidence            35689999999999999999999999 89999999987654

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.16  E-value=0.015  Score=45.54  Aligned_cols=40  Identities=25%  Similarity=0.434  Sum_probs=35.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCchhhhc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEI  241 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~-g~~~vi~~~~~~~~~~~  241 (243)
                      .+++|+|+|.|.+|..+++.++.. |. +|+++++++++.+.
T Consensus        38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~   78 (183)
T 3c85_A           38 GHAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQ   78 (183)
T ss_dssp             TTCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHH
Confidence            367899999999999999999998 99 89999999887653

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=95.05  E-value=0.056  Score=45.36  Aligned_cols=40  Identities=13%  Similarity=0.115  Sum_probs=35.5

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      .++++++|+|+|++|.+++..+...|+ +|++++++.+|.+
T Consensus       117 l~~k~vlViGaGg~g~a~a~~L~~~G~-~V~v~~R~~~~~~  156 (271)
T 1nyt_A          117 RPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAE  156 (271)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEECCHHHHH
Confidence            468899999999999999999999997 9999999987753

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=94.82  E-value=0.082  Score=46.39  Aligned_cols=38  Identities=34%  Similarity=0.464  Sum_probs=34.8

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      ..|++|.|.|.|.+|+.+++.++.+|+ +|++.+++..+
T Consensus       173 L~GktV~I~G~GnVG~~~A~~l~~~Ga-kVvvsD~~~~~  210 (355)
T 1c1d_A          173 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTER  210 (355)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCccH
Confidence            689999999999999999999999999 99998887654

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=94.82  E-value=0.018  Score=49.36  Aligned_cols=47  Identities=19%  Similarity=0.256  Sum_probs=40.4

Q ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       195 ~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ..+++++|++||.+|.|+.++.++.+++..|+ +|++++.+++.++.|
T Consensus       116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l~~A  162 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELS  162 (298)
T ss_dssp             HHTTCCTTCEEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHHHHH
T ss_pred             HHcCCCCcCEEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHHHHH
Confidence            34678999999999998877777788888899 999999999887765

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=94.79  E-value=0.039  Score=46.65  Aligned_cols=41  Identities=27%  Similarity=0.259  Sum_probs=36.9

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      .+|+++||.|+ +++|.+.++.+...|+ +|+++++++++++.
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~   68 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDA   68 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence            47899999998 8999999999999999 99999999887653

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=94.78  E-value=0.042  Score=46.74  Aligned_cols=41  Identities=27%  Similarity=0.349  Sum_probs=36.8

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      --.|++|+|+|.|.+|..+++.++.+|+ +|++.+++.++.+
T Consensus       154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~~~~~~  194 (300)
T 2rir_A          154 TIHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSSAHLA  194 (300)
T ss_dssp             CSTTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHH
T ss_pred             CCCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence            4578999999999999999999999999 9999999887644

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=94.75  E-value=0.012  Score=48.72  Aligned_cols=41  Identities=20%  Similarity=0.235  Sum_probs=34.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCchhhhcC
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIG  242 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~-g~~~vi~~~~~~~~~~~~  242 (243)
                      .++.+||.+|.|. |..+..+++.. +. +|++++.+++.++.+
T Consensus        84 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a  125 (269)
T 1p91_A           84 DKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAA  125 (269)
T ss_dssp             TTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHH
T ss_pred             CCCCEEEEECCCC-CHHHHHHHHhCCCC-eEEEEeCCHHHHHHH
Confidence            6789999999987 88888999886 66 999999998776543

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=94.68  E-value=0.059  Score=45.78  Aligned_cols=41  Identities=24%  Similarity=0.105  Sum_probs=36.7

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..+++++|+|+|+.|.+++..+...|+.+|+++.|+.+|.+
T Consensus       120 ~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~  160 (282)
T 3fbt_A          120 IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTS  160 (282)
T ss_dssp             CTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHH
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence            46899999999999999999999999988999999988764

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=94.67  E-value=0.073  Score=45.91  Aligned_cols=36  Identities=25%  Similarity=0.287  Sum_probs=33.1

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      ..|++++|+|+|++|.+++..+...|+.+|+++.|+
T Consensus       152 l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          152 IIGKKMTICGAGGAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             ccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence            468999999999999999999999999889999998

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=94.62  E-value=0.051  Score=46.03  Aligned_cols=42  Identities=12%  Similarity=0.134  Sum_probs=37.1

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ..+++++|+|+|++|.+++..+...|+.+|+++.|+.+|.+.
T Consensus       115 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~  156 (277)
T 3don_A          115 IEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNN  156 (277)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTT
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence            468899999999999999999999999889999999887653

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=94.60  E-value=0.055  Score=44.30  Aligned_cols=49  Identities=20%  Similarity=0.295  Sum_probs=38.8

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCchhhhcC
Q 026140          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIG  242 (243)
Q Consensus       193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g-~~~vi~~~~~~~~~~~~  242 (243)
                      +.......++++||-+|+|. |..+..+++.++ ..++++++.+++.++.+
T Consensus        85 i~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a  134 (255)
T 3mb5_A           85 IVAYAGISPGDFIVEAGVGS-GALTLFLANIVGPEGRVVSYEIREDFAKLA  134 (255)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEecCCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHH
Confidence            45677889999999999876 788888888853 34999999998776544

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=94.56  E-value=0.1  Score=47.21  Aligned_cols=40  Identities=25%  Similarity=0.320  Sum_probs=36.3

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       198 ~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      ..-.|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+
T Consensus       243 ~~L~GKTVgVIG~G~IGr~vA~~lrafGa-~Viv~d~dp~~  282 (464)
T 3n58_A          243 VMMAGKVAVVCGYGDVGKGSAQSLAGAGA-RVKVTEVDPIC  282 (464)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHH
T ss_pred             CcccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCcch
Confidence            35789999999999999999999999999 99999987754

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=94.53  E-value=0.04  Score=46.03  Aligned_cols=40  Identities=23%  Similarity=0.297  Sum_probs=35.2

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..|+++||.|+ |++|.++++.+...|+ +|++++++.++++
T Consensus        28 l~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~   68 (281)
T 3ppi_A           28 FEGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGK   68 (281)
T ss_dssp             GTTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHH
Confidence            35789999998 8999999999999999 8999999987754

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=94.47  E-value=0.033  Score=46.32  Aligned_cols=49  Identities=20%  Similarity=0.239  Sum_probs=38.3

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCchhhhcC
Q 026140          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIG  242 (243)
Q Consensus       193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g-~~~vi~~~~~~~~~~~~  242 (243)
                      +.....+.++++||-+|+| .|..+..+++..+ ..+|++++.+++.++.+
T Consensus        91 i~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a  140 (280)
T 1i9g_A           91 IVHEGDIFPGARVLEAGAG-SGALTLSLLRAVGPAGQVISYEQRADHAEHA  140 (280)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEEccc-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHH
Confidence            4566778999999999987 6788888888753 33999999988766543

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=94.46  E-value=0.09  Score=45.29  Aligned_cols=36  Identities=25%  Similarity=0.320  Sum_probs=33.2

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      ..+++++|+|+|+.|.+++..+...|+.+|+++.|+
T Consensus       146 l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt  181 (312)
T 3t4e_A          146 MRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRK  181 (312)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            468899999999999999999999999889999999

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=94.43  E-value=0.089  Score=44.85  Aligned_cols=41  Identities=22%  Similarity=0.156  Sum_probs=36.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..+++++|+|+|++|.+++..+...|+.+|++..|+.+|.+
T Consensus       139 l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~  179 (297)
T 2egg_A          139 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAE  179 (297)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHH
T ss_pred             CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHH
Confidence            46889999999999999999999999878999999987753

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=94.42  E-value=0.06  Score=45.12  Aligned_cols=40  Identities=25%  Similarity=0.259  Sum_probs=35.2

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..|+++||.|+ |++|.+.++.+...|+ +|+++++++++++
T Consensus        30 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~   70 (276)
T 3r1i_A           30 LSGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQ   70 (276)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            46789999998 8999999999999999 9999999887654

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=94.37  E-value=0.054  Score=45.97  Aligned_cols=40  Identities=35%  Similarity=0.353  Sum_probs=35.8

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..|+++||.|+ |++|..++..+...|+ +|++++++.++++
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~   69 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALE   69 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence            57899999998 8999999999999999 8999999987754

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=94.37  E-value=0.065  Score=44.64  Aligned_cols=39  Identities=26%  Similarity=0.383  Sum_probs=34.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      .++++||.|+ |++|..+++.+...|+ +|++++++.++.+
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~   70 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIE   70 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHH
Confidence            5789999998 9999999999999999 8999999876543

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=94.35  E-value=0.049  Score=45.65  Aligned_cols=39  Identities=23%  Similarity=0.316  Sum_probs=34.5

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      .++++||.|+ |++|..+++.+...|+ +|+++++++++++
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~   66 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQ   66 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence            4789999998 9999999999989999 8999999887654

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=94.34  E-value=0.089  Score=44.57  Aligned_cols=41  Identities=20%  Similarity=0.148  Sum_probs=36.0

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..+++++|+|+|++|.+++..+...|+.+|+++.|+.+|.+
T Consensus       124 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~  164 (281)
T 3o8q_A          124 LKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAE  164 (281)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHH
T ss_pred             ccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHH
Confidence            46899999999999999998888899778999999987754

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=94.33  E-value=0.082  Score=44.59  Aligned_cols=41  Identities=12%  Similarity=0.036  Sum_probs=36.1

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..+++++|+|+|++|.+++..+...|+.+|+++.|+.+|.+
T Consensus       118 l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~  158 (272)
T 3pwz_A          118 LRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKAL  158 (272)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHH
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence            36889999999999999999888999879999999987754

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=94.29  E-value=0.044  Score=45.34  Aligned_cols=40  Identities=30%  Similarity=0.340  Sum_probs=35.2

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..++++||.|+ |++|..++..+...|+ +|++++++.++++
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~   67 (262)
T 3rkr_A           27 LSGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLR   67 (262)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence            46789999998 9999999999889999 8999999987754

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=94.27  E-value=0.07  Score=44.36  Aligned_cols=40  Identities=18%  Similarity=0.283  Sum_probs=34.9

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..++++||.|+ |++|..++..+...|+ +|++++++.++++
T Consensus        19 l~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~   59 (267)
T 1vl8_A           19 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEAS   59 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            46789999998 9999999999999999 8999999876643

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=94.19  E-value=0.078  Score=43.55  Aligned_cols=42  Identities=21%  Similarity=0.106  Sum_probs=34.8

Q ss_pred             cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          197 ANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       197 ~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                      .....++++||.|+ |++|..++..+...|+ +|++++++++..
T Consensus        14 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~   56 (249)
T 1o5i_A           14 ELGIRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELL   56 (249)
T ss_dssp             --CCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHH
T ss_pred             HhccCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHH
Confidence            34467899999998 9999999999989999 899999887543

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=94.16  E-value=0.063  Score=44.98  Aligned_cols=40  Identities=25%  Similarity=0.170  Sum_probs=35.2

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..++++||.|+ |++|.+++..+...|+ +|+++++++++++
T Consensus        25 l~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~   65 (277)
T 4dqx_A           25 LNQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAV   65 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            46789999998 8999999999999999 9999999887654

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=94.15  E-value=0.08  Score=44.28  Aligned_cols=39  Identities=26%  Similarity=0.321  Sum_probs=34.4

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      .++++||.|+ |++|.++++.+...|+ +|+++++++++++
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~   67 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACA   67 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            5789999998 9999999999999999 8999999876643

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=94.14  E-value=0.076  Score=44.35  Aligned_cols=39  Identities=21%  Similarity=0.242  Sum_probs=34.4

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      .++++||.|+ |++|..++..+...|+ +|+++++++++++
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~   60 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLR   60 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            5789999998 9999999999999999 8999999876643

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=94.09  E-value=0.062  Score=44.99  Aligned_cols=40  Identities=25%  Similarity=0.318  Sum_probs=33.3

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..++++||.|+ |++|.+++..+...|+ +|++++++.++.+
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~   62 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVS   62 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            46789999998 8999999998889999 8999999887654

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=94.09  E-value=0.081  Score=44.04  Aligned_cols=40  Identities=25%  Similarity=0.332  Sum_probs=34.9

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      -.++++||.|+ |++|.++++.+...|+ +|+++++++++++
T Consensus        19 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~   59 (273)
T 1ae1_A           19 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELD   59 (273)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            35789999998 9999999999999999 8999999887653

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=94.08  E-value=0.071  Score=43.82  Aligned_cols=40  Identities=15%  Similarity=0.251  Sum_probs=33.8

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..++++||.|+ |++|..++..+...|+ +|++++++.++..
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~   60 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSW-NTISIDFRENPNA   60 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCTTS
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCccccc
Confidence            44789999998 8999999999999999 8999999876643

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=94.08  E-value=0.044  Score=46.09  Aligned_cols=40  Identities=13%  Similarity=0.212  Sum_probs=33.4

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..|+++||.|+ |++|.++++.+...|+ +|+++++++++++
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~   71 (281)
T 4dry_A           31 GEGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLD   71 (281)
T ss_dssp             ---CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence            36889999998 8999999999989999 9999999987654

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=94.05  E-value=0.081  Score=46.59  Aligned_cols=41  Identities=24%  Similarity=0.336  Sum_probs=37.0

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      .-.|++|+|+|.|.+|..+++.+..+|+ +|++.+++.++++
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~Ga-kVvv~D~~~~~l~  210 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVS  210 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHH
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCC-EEEEEcCCHHHHH
Confidence            4689999999999999999999999999 8999998877654

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=93.99  E-value=0.15  Score=42.82  Aligned_cols=40  Identities=20%  Similarity=0.210  Sum_probs=34.8

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      .+|++++|.|+ |++|.+++..+...|+ +|++++++.++.+
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~-~V~i~~R~~~~~~  157 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQ  157 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCHHHHH
Confidence            47899999995 9999999999999999 7999999877654

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=93.98  E-value=0.057  Score=45.76  Aligned_cols=40  Identities=18%  Similarity=0.173  Sum_probs=35.3

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..++++||.|+ |++|.++++.+...|+ +|++++++.++++
T Consensus        39 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~   79 (293)
T 3rih_A           39 LSARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSPRELS   79 (293)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence            46789999998 8999999999999999 9999999987654

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=93.94  E-value=0.089  Score=43.72  Aligned_cols=40  Identities=23%  Similarity=0.226  Sum_probs=34.8

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..++++||.|+ |++|..++..+...|+ +|+++++++++.+
T Consensus        29 l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~   69 (272)
T 1yb1_A           29 VTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLE   69 (272)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHH
Confidence            35789999998 9999999999999999 8999999876643

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=93.94  E-value=0.09  Score=44.29  Aligned_cols=43  Identities=14%  Similarity=0.183  Sum_probs=36.7

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       198 ~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      +...+++++|+|+|+.+.+++..+...|+.+|+++.|+.+|.+
T Consensus       115 ~~~~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~  157 (271)
T 1npy_A          115 HLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQ  157 (271)
T ss_dssp             TCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHH
Confidence            3446789999999999999999888999878999999987743

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=93.93  E-value=0.054  Score=45.02  Aligned_cols=40  Identities=23%  Similarity=0.291  Sum_probs=35.1

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..|+++||.|+ |++|.+++..+...|+ +|++++++.++++
T Consensus        18 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~   58 (266)
T 4egf_A           18 LDGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELD   58 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            36789999998 8999999999999999 8999999887654

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=93.90  E-value=0.078  Score=44.55  Aligned_cols=40  Identities=20%  Similarity=0.209  Sum_probs=34.7

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      .+++++||.|+ |++|.+++..+...|+ +|++++++.++++
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~   66 (283)
T 3v8b_A           26 QPSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVE   66 (283)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            46789999998 8999999999999999 9999999887654

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=93.86  E-value=0.071  Score=44.55  Aligned_cols=40  Identities=18%  Similarity=0.081  Sum_probs=35.0

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      -.|+++||.|+ |++|.++++.+...|+ +|++++++.++.+
T Consensus        25 l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~   65 (277)
T 4fc7_A           25 LRDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVL   65 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            46889999998 8999999999999999 9999999876643

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=93.82  E-value=0.08  Score=44.14  Aligned_cols=40  Identities=25%  Similarity=0.214  Sum_probs=35.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      .+ +++|+|+|++|.+++..+...|+.+|+++.|+.+|.+.
T Consensus       108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~  147 (253)
T 3u62_A          108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKA  147 (253)
T ss_dssp             CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHT
T ss_pred             CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            56 99999999999999999999999889999999888654

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=93.81  E-value=0.095  Score=43.99  Aligned_cols=40  Identities=15%  Similarity=0.107  Sum_probs=34.7

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..++++||.|+ |++|..++..+...|+ +|++++++.++.+
T Consensus        24 l~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r~~~~~~   64 (302)
T 1w6u_A           24 FQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLK   64 (302)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            35789999998 9999999999999999 8999999876643

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=93.76  E-value=0.083  Score=47.56  Aligned_cols=40  Identities=28%  Similarity=0.407  Sum_probs=36.2

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                      .-.|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+.
T Consensus       208 ~L~GktVgIiG~G~IG~~vA~~Lka~Ga-~Viv~D~~p~~a  247 (436)
T 3h9u_A          208 MIAGKTACVCGYGDVGKGCAAALRGFGA-RVVVTEVDPINA  247 (436)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHH
T ss_pred             cccCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCChhhh
Confidence            4579999999999999999999999999 899999987654

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=93.70  E-value=0.06  Score=45.06  Aligned_cols=40  Identities=33%  Similarity=0.350  Sum_probs=34.9

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..|+++||.|+ +++|.+++..+...|+ +|+++++++++.+
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~   71 (275)
T 4imr_A           31 LRGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTA   71 (275)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHH
Confidence            36789999998 8999999999999999 9999999876643

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=93.68  E-value=0.068  Score=44.52  Aligned_cols=40  Identities=25%  Similarity=0.281  Sum_probs=35.3

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..|+++||.|+ |++|..++..+...|+ +|++++++.++++
T Consensus        25 l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~   65 (266)
T 3grp_A           25 LTGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGTREDKLK   65 (266)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            46889999998 8999999999999999 9999999887654

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=93.65  E-value=0.11  Score=43.62  Aligned_cols=40  Identities=18%  Similarity=0.114  Sum_probs=35.0

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..+++++|+|+|++|.+++..+...|. +|++..|+.+|.+
T Consensus       117 ~~~~~vlvlGaGg~g~a~a~~L~~~G~-~v~v~~R~~~~a~  156 (272)
T 1p77_A          117 RPNQHVLILGAGGATKGVLLPLLQAQQ-NIVLANRTFSKTK  156 (272)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTTC-EEEEEESSHHHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence            468899999999999999998889996 9999999987654

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=93.62  E-value=0.064  Score=44.75  Aligned_cols=40  Identities=25%  Similarity=0.246  Sum_probs=34.9

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..++++||.|+ |++|.+++..+...|+ +|+++++++++.+
T Consensus        26 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~   66 (270)
T 3ftp_A           26 LDKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAE   66 (270)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            36789999998 8999999999989999 9999999887654

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=93.54  E-value=0.16  Score=42.75  Aligned_cols=38  Identities=18%  Similarity=0.219  Sum_probs=34.7

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       202 g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      +++++|+|+|+.|.+++..+...|. +|+++.|+.+|.+
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~-~v~V~nRt~~ka~  155 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGL-QVSVLNRSSRGLD  155 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCTTHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            8999999999999999999999995 9999999988764

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=93.52  E-value=0.1  Score=43.13  Aligned_cols=38  Identities=24%  Similarity=0.246  Sum_probs=33.4

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                      .++++||.|+ |++|.++++.+...|+ +|++++++.+++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~   58 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGD-KVAITYRSGEPP   58 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHhh
Confidence            5789999998 9999999999999999 899999887654

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=93.48  E-value=0.062  Score=45.08  Aligned_cols=40  Identities=25%  Similarity=0.390  Sum_probs=35.0

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..|+++||.|+ |++|.+++..+...|+ +|++++++.++.+
T Consensus        27 l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~   67 (277)
T 3gvc_A           27 LAGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAAD   67 (277)
T ss_dssp             CTTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            46789999998 8999999999889999 9999999887654

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=93.44  E-value=0.063  Score=44.86  Aligned_cols=40  Identities=30%  Similarity=0.395  Sum_probs=35.1

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..|+++||.|+ |++|.+++..+...|+ +|++++++.++.+
T Consensus        24 l~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~   64 (271)
T 4ibo_A           24 LGGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVA   64 (271)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            46889999998 8999999999999999 9999999887654

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=93.42  E-value=0.071  Score=44.57  Aligned_cols=40  Identities=15%  Similarity=0.126  Sum_probs=34.0

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..++++||.|+ |++|.+++..+...|+ +|++++++.++++
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~   66 (272)
T 4dyv_A           26 TGKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRRLDALQ   66 (272)
T ss_dssp             --CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence            46788999998 8999999999999999 8999999887654

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=93.36  E-value=0.088  Score=44.55  Aligned_cols=40  Identities=25%  Similarity=0.248  Sum_probs=34.7

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..++++||.|+ |++|..++..+...|+ +|+++++++++++
T Consensus        24 l~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~   64 (297)
T 1xhl_A           24 FSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLE   64 (297)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            35789999998 8999999999999999 8999999887653

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=93.25  E-value=0.08  Score=41.76  Aligned_cols=82  Identities=17%  Similarity=0.287  Sum_probs=47.1

Q ss_pred             eeeeeEE-eccCcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Q 026140          155 SFSEYTV-LDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD  233 (243)
Q Consensus       155 ~~~~~~~-v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~  233 (243)
                      .|.+|.. .+....+.+++.+++..+.. . ........+..  ...++++||-+|.|. |..+..+++ .+..+|++++
T Consensus        17 ~w~~~~~~~~~~~~~~~~~~~~f~~~~~-~-~~~~~~~~l~~--~~~~~~~vLDiG~G~-G~~~~~l~~-~~~~~v~~vD   90 (205)
T 3grz_A           17 EWEDYQPVFKDQEIIRLDPGLAFGTGNH-Q-TTQLAMLGIER--AMVKPLTVADVGTGS-GILAIAAHK-LGAKSVLATD   90 (205)
T ss_dssp             TTCCCCCSSTTCEEEEESCC-----CCH-H-HHHHHHHHHHH--HCSSCCEEEEETCTT-SHHHHHHHH-TTCSEEEEEE
T ss_pred             cccccccCCCCceeEEecCCcccCCCCC-c-cHHHHHHHHHH--hccCCCEEEEECCCC-CHHHHHHHH-CCCCEEEEEE
Confidence            4666665 56667777777776655421 1 11111111111  156889999998865 666666665 4655999999


Q ss_pred             CCchhhhcC
Q 026140          234 VISEKFEIG  242 (243)
Q Consensus       234 ~~~~~~~~~  242 (243)
                      .++..++.+
T Consensus        91 ~s~~~~~~a   99 (205)
T 3grz_A           91 ISDESMTAA   99 (205)
T ss_dssp             SCHHHHHHH
T ss_pred             CCHHHHHHH
Confidence            998766543

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=93.05  E-value=0.15  Score=42.88  Aligned_cols=38  Identities=32%  Similarity=0.211  Sum_probs=33.3

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      -.|+++||.|+ |++|.++++.+...|+ +|++++++.++
T Consensus        45 l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~   83 (291)
T 3ijr_A           45 LKGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEG   83 (291)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchH
Confidence            36889999998 8999999999999999 89999887653

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=93.04  E-value=0.093  Score=43.66  Aligned_cols=40  Identities=30%  Similarity=0.376  Sum_probs=34.5

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..|+++||.|+ |++|.++++.+...|+ +|++++++.++.+
T Consensus        26 l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~   66 (266)
T 3uxy_A           26 FEGKVALVTGAAGGIGGAVVTALRAAGA-RVAVADRAVAGIA   66 (266)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECSSCCTTSC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            46889999998 8999999999999999 9999998876543

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=92.83  E-value=0.13  Score=44.68  Aligned_cols=38  Identities=34%  Similarity=0.328  Sum_probs=34.0

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      -.|+++||.|+ +++|.+++..+...|+ +|++++++.++
T Consensus        43 l~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~   81 (346)
T 3kvo_A           43 LAGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQP   81 (346)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSC
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhh
Confidence            46899999998 8999999999989999 99999988765

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=92.81  E-value=0.16  Score=42.55  Aligned_cols=35  Identities=34%  Similarity=0.340  Sum_probs=31.3

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      ..++++||.|+ |++|..++..+...|+ +|++++++
T Consensus        23 l~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~   58 (281)
T 3v2h_A           23 MMTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFG   58 (281)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            45789999998 8999999999999999 99999984

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=92.81  E-value=0.092  Score=43.54  Aligned_cols=37  Identities=22%  Similarity=0.204  Sum_probs=32.3

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      .++++||.|+ |++|.+++..+...|+ +|+++++++++
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~   63 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGH-RVIISYRTEHA   63 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESSCCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCChHH
Confidence            5788999998 8999999999889999 89999988765

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=92.79  E-value=0.11  Score=42.98  Aligned_cols=39  Identities=21%  Similarity=0.200  Sum_probs=33.8

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                      ..++++||.|+ |++|.+++..+...|+ +|++++++.++.
T Consensus        26 ~~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~   65 (260)
T 3un1_A           26 NQQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRSIKPS   65 (260)
T ss_dssp             TTCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCCCC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhhc
Confidence            35789999998 8999999999999999 999999887653

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=92.75  E-value=0.098  Score=43.85  Aligned_cols=38  Identities=26%  Similarity=0.204  Sum_probs=33.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCc-hhh
Q 026140          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKF  239 (243)
Q Consensus       201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~-~~~  239 (243)
                      .++++||.|+ |++|.+++..+...|+ +|++++++. ++.
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~   61 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYHNSAEAA   61 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEESSCHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeCCchHHH
Confidence            5789999998 8999999999889999 899999887 543

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=92.73  E-value=0.29  Score=43.34  Aligned_cols=37  Identities=22%  Similarity=0.267  Sum_probs=34.0

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      --+..+|+|+|+|..|..+++++..+|+++|++++++
T Consensus       189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            4467899999999999999999999999899999998

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=92.71  E-value=0.16  Score=42.38  Aligned_cols=37  Identities=30%  Similarity=0.417  Sum_probs=32.1

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      ..|+++||.|+ |++|.++++.+...|+ +|+++++++.
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~   66 (273)
T 3uf0_A           29 LAGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRTDG   66 (273)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCHHH
Confidence            46889999998 8999999999999999 8999986643

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=92.70  E-value=0.13  Score=43.10  Aligned_cols=39  Identities=13%  Similarity=0.189  Sum_probs=33.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      .++++||.|+ |++|..++..+...|+ +|+++++++++.+
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~   82 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCD   82 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHH
Confidence            5789999998 9999999998888999 8999988776543

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=92.68  E-value=0.2  Score=44.70  Aligned_cols=38  Identities=21%  Similarity=0.229  Sum_probs=34.2

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       198 ~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      .+.++++|+|+|+|.+|..+++.++.+|+ +|++++.++
T Consensus        31 ~~~~~~~IlIlG~G~lg~~~~~aa~~lG~-~v~v~d~~~   68 (419)
T 4e4t_A           31 PILPGAWLGMVGGGQLGRMFCFAAQSMGY-RVAVLDPDP   68 (419)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCT
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            46799999999999999999999999999 899988654

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=92.55  E-value=0.1  Score=42.25  Aligned_cols=38  Identities=18%  Similarity=0.097  Sum_probs=33.3

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcC-CCeEEEEcCCchhhh
Q 026140          202 GSTVVIFGL-GSIGLAVAEGARLCG-ATRIIGVDVISEKFE  240 (243)
Q Consensus       202 g~~VlI~Ga-G~vG~~~v~la~~~g-~~~vi~~~~~~~~~~  240 (243)
                      -++|||.|+ |.+|..+++.+...| + +|+++++++++..
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~-~V~~~~R~~~~~~   62 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTI-KQTLFARQPAKIH   62 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTE-EEEEEESSGGGSC
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCc-eEEEEEcChhhhc
Confidence            368999998 999999999999999 7 9999999987754

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=92.51  E-value=0.14  Score=42.08  Aligned_cols=39  Identities=21%  Similarity=0.126  Sum_probs=32.8

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC-Cchhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKF  239 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~-~~~~~  239 (243)
                      ..++++||.|+ |++|..++..+...|+ +|+++++ ++++.
T Consensus        19 ~~~k~vlItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~   59 (274)
T 1ja9_A           19 LAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAA   59 (274)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCchHHH
Confidence            35789999998 9999999999999999 8999988 55443

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=92.44  E-value=0.11  Score=42.76  Aligned_cols=40  Identities=28%  Similarity=0.351  Sum_probs=34.7

Q ss_pred             CCCCEEEEECC-C-HHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGL-G-SIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G-~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..++++||.|+ | ++|...+..+...|+ +|++++++.++.+
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~   61 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLG   61 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHH
Confidence            46889999998 7 799999998889999 8999999887654

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=92.35  E-value=0.13  Score=44.28  Aligned_cols=39  Identities=15%  Similarity=0.147  Sum_probs=33.9

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEc-CCchhhh
Q 026140          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEKFE  240 (243)
Q Consensus       201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~-~~~~~~~  240 (243)
                      .++++||.|+ |++|.+++..+...|+ +|++++ ++.++++
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~~r~~~~~~   85 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEAN   85 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHH
Confidence            5789999998 8999999999999999 899998 8876543

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=92.32  E-value=0.38  Score=40.76  Aligned_cols=58  Identities=17%  Similarity=0.188  Sum_probs=41.6

Q ss_pred             cccchhhHhHHHHHHHhcCCCCCCEEEEECCC-HHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          180 CLLSCGVSTGVGAAWRTANVEVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       180 a~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG-~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      .+++|.....+..+.+..-.-.|++++|+|.| .+|..+++++..+|+ +|+++.+....
T Consensus       139 ~~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t~~  197 (285)
T 3l07_A          139 CLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKA-TVTTCHRFTTD  197 (285)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSS
T ss_pred             CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCchh
Confidence            34555555555544333334689999999986 589999999999999 88888765443

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=92.28  E-value=0.38  Score=40.76  Aligned_cols=58  Identities=17%  Similarity=0.146  Sum_probs=41.8

Q ss_pred             ccchhhHhHHHHHHHhcCCCCCCEEEEECCC-HHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       181 ~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG-~vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                      +++|.....+..+.+....-.|++++|+|.| .+|..+++++..+|+ +|+++.+....+
T Consensus       139 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gA-tVtv~h~~t~~L  197 (285)
T 3p2o_A          139 FLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGA-TVSVCHIKTKDL  197 (285)
T ss_dssp             CCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSCH
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCchhH
Confidence            4555544455534333334689999999985 589999999999999 888887665443

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=92.25  E-value=0.15  Score=42.24  Aligned_cols=36  Identities=28%  Similarity=0.382  Sum_probs=32.5

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      .+.+|+|+|+|++|..++..+...|.+++++++.+.
T Consensus        30 ~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           30 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            357899999999999999999999998999999876

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=92.21  E-value=0.2  Score=42.29  Aligned_cols=35  Identities=31%  Similarity=0.289  Sum_probs=31.5

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      ..|+++||.|+ +++|.+++..+...|+ +|++++++
T Consensus        26 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~   61 (299)
T 3t7c_A           26 VEGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVC   61 (299)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            46889999998 8999999999999999 99999876

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=92.16  E-value=0.17  Score=41.97  Aligned_cols=36  Identities=22%  Similarity=0.207  Sum_probs=31.6

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      -.|+++||.|+ |++|..++..+...|+ +|++++++.
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~   63 (271)
T 4iin_A           27 FTGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSN   63 (271)
T ss_dssp             CSCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            36789999998 8999999998889999 899999854

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=92.14  E-value=0.24  Score=41.49  Aligned_cols=40  Identities=20%  Similarity=0.184  Sum_probs=35.3

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..+.+++|+|+|.+|.+++..+...|+ +|++.+++.++.+
T Consensus       127 ~~~~~v~iiGaG~~g~aia~~L~~~g~-~V~v~~r~~~~~~  166 (275)
T 2hk9_A          127 VKEKSILVLGAGGASRAVIYALVKEGA-KVFLWNRTKEKAI  166 (275)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSHHHHH
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHcCC-EEEEEECCHHHHH
Confidence            457899999999999999999999999 9999999987654

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=92.09  E-value=0.46  Score=40.60  Aligned_cols=58  Identities=17%  Similarity=0.097  Sum_probs=42.6

Q ss_pred             ccchhhHhHHHHHHHhcCCCCCCEEEEECCC-HHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       181 ~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG-~vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                      +++|.....+..+.+..-.-.|++++|+|.| .+|..+++++..+|+ +|+++.+....+
T Consensus       144 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~~~~T~~l  202 (300)
T 4a26_A          144 FTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENA-TVTIVHSGTSTE  202 (300)
T ss_dssp             CCCHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTSCHH
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCCCCc
Confidence            4555555555544444445689999999985 589999999999999 898888754433

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=92.09  E-value=0.13  Score=43.84  Aligned_cols=39  Identities=23%  Similarity=0.352  Sum_probs=30.2

Q ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       198 ~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      .-..+++|||.|+ |.+|..+++.+...|. +|+++++++.
T Consensus        15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~   54 (347)
T 4id9_A           15 VPRGSHMILVTGSAGRVGRAVVAALRTQGR-TVRGFDLRPS   54 (347)
T ss_dssp             ------CEEEETTTSHHHHHHHHHHHHTTC-CEEEEESSCC
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCCCC
Confidence            3456788999998 9999999999999999 8999988764

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=92.02  E-value=0.17  Score=42.27  Aligned_cols=38  Identities=21%  Similarity=0.193  Sum_probs=32.8

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      ..++++||.|+ |++|..++..+...|+ +|++++++.++
T Consensus        27 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~   65 (283)
T 1g0o_A           27 LEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTE   65 (283)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchH
Confidence            35789999998 9999999999999999 89999887643

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=91.95  E-value=0.15  Score=41.87  Aligned_cols=39  Identities=13%  Similarity=0.122  Sum_probs=33.0

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcC---CCeEEEEcCCchhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCG---ATRIIGVDVISEKF  239 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g---~~~vi~~~~~~~~~  239 (243)
                      .+++++||.|+ |++|..+++.+...|   + +|++++++.++.
T Consensus        19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~-~V~~~~r~~~~~   61 (267)
T 1sny_A           19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQA   61 (267)
T ss_dssp             -CCSEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSC
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhcCCCCc-EEEEEecChhhh
Confidence            45689999998 999999999998889   7 999999987643

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=91.88  E-value=0.27  Score=41.03  Aligned_cols=39  Identities=21%  Similarity=0.251  Sum_probs=32.7

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC-Cchh
Q 026140          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEK  238 (243)
Q Consensus       199 ~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~-~~~~  238 (243)
                      ...++++||.|+ |++|.+++..+...|+ +|+++++ ++++
T Consensus        26 ~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~   66 (280)
T 4da9_A           26 QKARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEG   66 (280)
T ss_dssp             CCCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHH
T ss_pred             ccCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHH
Confidence            346889999998 8999999999999999 8999885 5443

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=91.87  E-value=0.23  Score=42.75  Aligned_cols=41  Identities=24%  Similarity=0.144  Sum_probs=34.6

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHc-CCCeEEEEcCCchhh
Q 026140          199 VEVGSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKF  239 (243)
Q Consensus       199 ~~~g~~VlI~Ga-G~vG~~~v~la~~~-g~~~vi~~~~~~~~~  239 (243)
                      ...+++|||.|+ |.+|..+++.+... |..+|+++++++.+.
T Consensus        18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~   60 (344)
T 2gn4_A           18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQ   60 (344)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHH
T ss_pred             hhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhH
Confidence            346789999998 99999999888888 876899999987654

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=91.82  E-value=0.17  Score=42.65  Aligned_cols=38  Identities=21%  Similarity=0.220  Sum_probs=33.0

Q ss_pred             CCCCEEEEECC-C--HHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          200 EVGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       200 ~~g~~VlI~Ga-G--~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      ..|+++||.|+ |  ++|..+++.+...|+ +|++++++++.
T Consensus        28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~   68 (296)
T 3k31_A           28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETF   68 (296)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGG
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHH
Confidence            46889999998 5  999999998889999 89999988654

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=91.72  E-value=0.25  Score=42.74  Aligned_cols=38  Identities=32%  Similarity=0.587  Sum_probs=34.1

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      -.|++|.|+|.|.+|..+++.++.+|. +|++.+++.++
T Consensus       135 l~gktvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~  172 (324)
T 3evt_A          135 LTGQQLLIYGTGQIGQSLAAKASALGM-HVIGVNTTGHP  172 (324)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCCC
T ss_pred             ccCCeEEEECcCHHHHHHHHHHHhCCC-EEEEECCCcch
Confidence            357899999999999999999999999 99999987654

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=91.71  E-value=0.27  Score=42.19  Aligned_cols=38  Identities=29%  Similarity=0.497  Sum_probs=34.6

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      ..|++|.|+|.|.+|..+++.++.+|+ +|++.+++.++
T Consensus       140 l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~  177 (313)
T 2ekl_A          140 LAGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYDILDIR  177 (313)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSCCH
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCcch
Confidence            468899999999999999999999999 99999988765

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=91.68  E-value=0.23  Score=42.21  Aligned_cols=39  Identities=33%  Similarity=0.392  Sum_probs=34.8

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                      -.|++|.|+|.|.+|..+++.++.+|+ +|++.+++.++.
T Consensus       120 l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~  158 (290)
T 3gvx_A          120 LYGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRSSVDQ  158 (290)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSCCCT
T ss_pred             eecchheeeccCchhHHHHHHHHhhCc-EEEEEecccccc
Confidence            357899999999999999999999999 999999887543

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=91.65  E-value=0.27  Score=42.01  Aligned_cols=38  Identities=34%  Similarity=0.434  Sum_probs=34.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      -.|++|.|+|.|.+|..+++.++.+|+ +|++.+++.++
T Consensus       140 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~  177 (307)
T 1wwk_A          140 LEGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPYPNE  177 (307)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH
T ss_pred             cCCceEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCCh
Confidence            357899999999999999999999999 99999988754

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=91.62  E-value=0.18  Score=41.95  Aligned_cols=35  Identities=20%  Similarity=0.176  Sum_probs=30.5

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      ..++++||.|+ |++|.+++..+...|+ +|+++++.
T Consensus        26 l~~k~vlVTGas~gIG~aia~~la~~G~-~V~~~~~~   61 (269)
T 4dmm_A           26 LTDRIALVTGASRGIGRAIALELAAAGA-KVAVNYAS   61 (269)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            36789999998 8999999999999999 88888873

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=91.59  E-value=0.14  Score=42.47  Aligned_cols=38  Identities=29%  Similarity=0.233  Sum_probs=32.8

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                      .++++||.|+ |++|..++..+...|+ +|++++++.++.
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~   71 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYNSHPAD   71 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTC-EEEEEESSSCCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHH
Confidence            5789999998 9999999988888899 899999887543

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=91.50  E-value=0.42  Score=42.40  Aligned_cols=36  Identities=31%  Similarity=0.391  Sum_probs=32.7

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      -+..+|+|+|+|..|..+++++..+|+++|+++|++
T Consensus       186 l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~  221 (398)
T 2a9f_A          186 LDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF  221 (398)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            345699999999999999999999999999999986

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=91.50  E-value=0.28  Score=41.26  Aligned_cols=39  Identities=31%  Similarity=0.258  Sum_probs=33.5

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..+++++|+|+|++|.+++..+...|  +|++++++.++.+
T Consensus       126 l~~k~vlV~GaGgiG~aia~~L~~~G--~V~v~~r~~~~~~  164 (287)
T 1nvt_A          126 VKDKNIVIYGAGGAARAVAFELAKDN--NIIIANRTVEKAE  164 (287)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS--EEEEECSSHHHHH
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCC--CEEEEECCHHHHH
Confidence            46789999999999999998888888  8999999877653

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=91.44  E-value=0.28  Score=42.24  Aligned_cols=39  Identities=21%  Similarity=0.418  Sum_probs=33.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHc-CCCeEEEEcCCchhhh
Q 026140          201 VGSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFE  240 (243)
Q Consensus       201 ~g~~VlI~Ga-G~vG~~~v~la~~~-g~~~vi~~~~~~~~~~  240 (243)
                      .+.+|||.|+ |.+|..++..+... |. +|++++++.++..
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~   63 (372)
T 3slg_A           23 KAKKVLILGVNGFIGHHLSKRILETTDW-EVFGMDMQTDRLG   63 (372)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHHSSC-EEEEEESCCTTTG
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCC-EEEEEeCChhhhh
Confidence            4579999998 99999999988887 88 9999999876543

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=91.35  E-value=0.38  Score=41.50  Aligned_cols=55  Identities=20%  Similarity=0.163  Sum_probs=40.8

Q ss_pred             cccchhhHhHHHHHHHh--------cC-CCCCCEEEEECCC-HHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          180 CLLSCGVSTGVGAAWRT--------AN-VEVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       180 a~~~~~~~ta~~~l~~~--------~~-~~~g~~VlI~GaG-~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      .+++|....+...+.+.        .+ --.|++++|+|+| .+|..+++++..+|+ +|++++++
T Consensus       146 ~~~PcTp~a~v~ll~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gA-tVtv~nR~  210 (320)
T 1edz_A          146 SILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVN  210 (320)
T ss_dssp             CCCCHHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSS
T ss_pred             CcCCCcHHHHHHHHHhhcccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCC-EEEEEeCc
Confidence            45666555555534331        23 4579999999998 579999999999999 89988776

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=91.30  E-value=0.33  Score=40.81  Aligned_cols=36  Identities=19%  Similarity=0.060  Sum_probs=31.8

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      -.|+++||.|+ |++|.+++..+...|+ +|++++++.
T Consensus        47 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~   83 (294)
T 3r3s_A           47 LKDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPA   83 (294)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGG
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            36889999998 8999999999999999 899988763

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=91.17  E-value=0.35  Score=40.21  Aligned_cols=36  Identities=31%  Similarity=0.290  Sum_probs=30.8

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ..|+++||.|+ |++|.+++..+...|+ +|++++++.
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~   65 (271)
T 3v2g_A           29 LAGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNA   65 (271)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            46889999998 8999999999999999 888885544

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=91.16  E-value=0.26  Score=42.03  Aligned_cols=36  Identities=36%  Similarity=0.411  Sum_probs=32.0

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       199 ~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      ...|+++||.|+ |++|.+++..+...|+ +|++++++
T Consensus        24 ~l~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~   60 (322)
T 3qlj_A           24 VVDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIG   60 (322)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCC
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCc
Confidence            356889999998 8999999999889999 99999876

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=91.11  E-value=0.24  Score=42.87  Aligned_cols=37  Identities=41%  Similarity=0.477  Sum_probs=33.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      .|++|.|+|.|.+|..+++.++.+|+ +|++.+++.++
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~  181 (331)
T 1xdw_A          145 RNCTVGVVGLGRIGRVAAQIFHGMGA-TVIGEDVFEIK  181 (331)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCccH
Confidence            46899999999999999999999999 89999987654

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=91.11  E-value=0.25  Score=41.95  Aligned_cols=38  Identities=21%  Similarity=0.228  Sum_probs=32.5

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       199 ~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      ...+.+|||.|+ |.+|..++..+...|. +|++++++..
T Consensus        17 ~~~~~~vlVTGasG~iG~~l~~~L~~~g~-~V~~~~r~~~   55 (330)
T 2pzm_A           17 RGSHMRILITGGAGCLGSNLIEHWLPQGH-EILVIDNFAT   55 (330)
T ss_dssp             TTTCCEEEEETTTSHHHHHHHHHHGGGTC-EEEEEECCSS
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCc
Confidence            345679999998 9999999998888998 9999998653

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=90.96  E-value=0.3  Score=40.49  Aligned_cols=38  Identities=18%  Similarity=0.184  Sum_probs=29.8

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEE-cCCchh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEK  238 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~-~~~~~~  238 (243)
                      ..++++||.|+ |++|.+++..+...|+ +|+++ .+++++
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~   64 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAA   64 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHH
Confidence            46889999998 8999999998888999 88877 444443

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=90.93  E-value=0.32  Score=41.46  Aligned_cols=36  Identities=31%  Similarity=0.342  Sum_probs=31.7

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      .+++|||.|+ |.+|..++..+...|. +|++++++..
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~   60 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFST   60 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCC
Confidence            4689999998 9999999999999998 9999998653

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=90.90  E-value=0.22  Score=41.95  Aligned_cols=38  Identities=24%  Similarity=0.286  Sum_probs=32.7

Q ss_pred             CCCCCEEEEECC-CH--HHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          199 VEVGSTVVIFGL-GS--IGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       199 ~~~g~~VlI~Ga-G~--vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      ...|+++||.|+ |.  +|.+++..+...|+ +|++++++++
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~   68 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDA   68 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHH
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHH
Confidence            357899999997 66  99999999989999 8999998864

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=90.87  E-value=0.2  Score=39.78  Aligned_cols=47  Identities=21%  Similarity=0.198  Sum_probs=38.0

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +.....+.++++||-+|.|. |..++.+++. +. +|++++.+++.++.+
T Consensus        47 ~l~~l~~~~~~~vLDlGcG~-G~~~~~la~~-~~-~v~~vD~s~~~~~~a   93 (204)
T 3njr_A           47 TLAALAPRRGELLWDIGGGS-GSVSVEWCLA-GG-RAITIEPRADRIENI   93 (204)
T ss_dssp             HHHHHCCCTTCEEEEETCTT-CHHHHHHHHT-TC-EEEEEESCHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEecCCC-CHHHHHHHHc-CC-EEEEEeCCHHHHHHH
Confidence            34566788999999999875 7788888887 77 999999998876654

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=90.85  E-value=0.29  Score=42.35  Aligned_cols=37  Identities=24%  Similarity=0.353  Sum_probs=33.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      .|++|.|+|.|.+|..+++.++.+|+ +|++.+++.++
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~  181 (333)
T 1j4a_A          145 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRNP  181 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcch
Confidence            47899999999999999999999999 99999987754

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=90.80  E-value=0.27  Score=42.59  Aligned_cols=38  Identities=29%  Similarity=0.304  Sum_probs=34.0

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      -.|++|.|+|.|.+|..+++.++.+|+ +|++.+++..+
T Consensus       143 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~  180 (333)
T 1dxy_A          143 LGQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPYPMK  180 (333)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCS
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCcch
Confidence            357899999999999999999999999 99999987654

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=90.78  E-value=0.33  Score=41.57  Aligned_cols=38  Identities=32%  Similarity=0.391  Sum_probs=33.9

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      ..|++|.|+|.|.+|..+++.++.+|. +|++.+++.++
T Consensus       142 l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~  179 (311)
T 2cuk_A          142 LQGLTLGLVGMGRIGQAVAKRALAFGM-RVVYHARTPKP  179 (311)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCS
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHCCC-EEEEECCCCcc
Confidence            457899999999999999999999999 99999987654

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=90.77  E-value=0.18  Score=42.13  Aligned_cols=37  Identities=24%  Similarity=0.259  Sum_probs=32.9

Q ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       203 ~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      +++||.|+ |++|..+++.+...|+ +|+++++++++++
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~-~V~~~~r~~~~~~   59 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW-SLVLTGRREERLQ   59 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence            78999998 8999999999999999 9999999887654

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=90.73  E-value=0.27  Score=40.66  Aligned_cols=40  Identities=25%  Similarity=0.122  Sum_probs=32.4

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEE-cCCchhhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~-~~~~~~~~  240 (243)
                      ..++++||.|+ |++|.+++..+...|+ +|+++ .++.++.+
T Consensus        24 ~~~k~vlITGas~gIG~a~a~~l~~~G~-~V~~~~~~~~~~~~   65 (272)
T 4e3z_A           24 SDTPVVLVTGGSRGIGAAVCRLAARQGW-RVGVNYAANREAAD   65 (272)
T ss_dssp             CCSCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCChhHHH
Confidence            46789999998 9999999999999999 77666 66665543

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=90.71  E-value=0.63  Score=39.75  Aligned_cols=59  Identities=14%  Similarity=0.215  Sum_probs=41.8

Q ss_pred             cccchhhHhHHHHHHHhcCCCCCCEEEEECCC-HHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          180 CLLSCGVSTGVGAAWRTANVEVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       180 a~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG-~vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                      .+++|+.......+.+..---.|++++|+|.| .+|.-+++++..+|+ +|+++.+....+
T Consensus       143 ~~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t~~L  202 (301)
T 1a4i_A          143 CFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSKTAHL  202 (301)
T ss_dssp             CCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSSH
T ss_pred             CccCchHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEECCcccH
Confidence            35565544444433332324689999999997 689999999999999 888887665443

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=90.57  E-value=0.31  Score=41.47  Aligned_cols=36  Identities=25%  Similarity=0.243  Sum_probs=31.8

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       199 ~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      ...|+++||.|+ |++|.+++..+...|+ +|++++++
T Consensus        43 ~l~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~   79 (317)
T 3oec_A           43 RLQGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLC   79 (317)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecc
Confidence            356889999998 8999999999999999 89998875

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=90.56  E-value=0.34  Score=44.33  Aligned_cols=40  Identities=23%  Similarity=0.291  Sum_probs=36.3

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                      .-.|++|.|+|.|.+|..+++.++.+|+ +|++.+++..+.
T Consensus       274 ~L~GktVgIIG~G~IG~~vA~~l~~~G~-~V~v~d~~~~~~  313 (494)
T 3d64_A          274 MIAGKIAVVAGYGDVGKGCAQSLRGLGA-TVWVTEIDPICA  313 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSCHHHH
T ss_pred             ccCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCChHhH
Confidence            4679999999999999999999999999 999999988653

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=90.54  E-value=0.34  Score=44.17  Aligned_cols=40  Identities=28%  Similarity=0.346  Sum_probs=36.5

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                      .-.|++|.|+|.|.+|..+++.++.+|+ +|++++++..+.
T Consensus       254 ~l~GktVgIIG~G~IG~~vA~~l~~~G~-~Viv~d~~~~~~  293 (479)
T 1v8b_A          254 LISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICA  293 (479)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHH
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHhCcC-EEEEEeCChhhH
Confidence            4689999999999999999999999999 999999988653

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=90.47  E-value=0.5  Score=39.08  Aligned_cols=39  Identities=23%  Similarity=0.273  Sum_probs=33.9

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..| +++|+|+|.+|.+++..+...|+ +|++.+++.++.+
T Consensus       115 l~~-~v~iiG~G~~g~~~a~~l~~~g~-~v~v~~r~~~~~~  153 (263)
T 2d5c_A          115 LKG-PALVLGAGGAGRAVAFALREAGL-EVWVWNRTPQRAL  153 (263)
T ss_dssp             CCS-CEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHH
T ss_pred             CCC-eEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence            356 99999999999999999999999 8999999876643

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=90.47  E-value=0.39  Score=37.65  Aligned_cols=49  Identities=14%  Similarity=0.123  Sum_probs=38.9

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +......+++++||-+|+|. |..+..+++.....+|++++.+++.++.+
T Consensus        32 ~l~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a   80 (204)
T 3e05_A           32 TLSKLRLQDDLVMWDIGAGS-ASVSIEASNLMPNGRIFALERNPQYLGFI   80 (204)
T ss_dssp             HHHHTTCCTTCEEEEETCTT-CHHHHHHHHHCTTSEEEEEECCHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEECCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            44567788999999999874 77888888886444999999998876654

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=90.45  E-value=0.41  Score=41.36  Aligned_cols=38  Identities=32%  Similarity=0.569  Sum_probs=33.9

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      -.|++|.|+|.|.+|..+++.++.+|. +|++.+++.++
T Consensus       138 l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~  175 (324)
T 3hg7_A          138 LKGRTLLILGTGSIGQHIAHTGKHFGM-KVLGVSRSGRE  175 (324)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCC
T ss_pred             cccceEEEEEECHHHHHHHHHHHhCCC-EEEEEcCChHH
Confidence            347899999999999999999999999 99999987643

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=90.44  E-value=0.37  Score=40.97  Aligned_cols=36  Identities=31%  Similarity=0.460  Sum_probs=30.9

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      .+.+|||.|+ |.+|..++..+...|. +|++++++..
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~   56 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGD-KVVGIDNFAT   56 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSS
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCCc
Confidence            4578999998 9999999998888998 9999998753

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=90.40  E-value=0.68  Score=39.29  Aligned_cols=59  Identities=17%  Similarity=0.160  Sum_probs=42.8

Q ss_pred             cccchhhHhHHHHHHHhcCCCCCCEEEEECCC-HHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          180 CLLSCGVSTGVGAAWRTANVEVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       180 a~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG-~vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                      .+++|+.......+.+...--.|++++|+|.| .+|.-+++++..+|+ +|+++.+....+
T Consensus       137 ~~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t~~L  196 (288)
T 1b0a_A          137 RLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRFTKNL  196 (288)
T ss_dssp             SSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSSCSCH
T ss_pred             CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCC-eEEEEeCCchhH
Confidence            34565544445544333335689999999997 589999999999999 888887766443

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=90.34  E-value=0.42  Score=41.28  Aligned_cols=38  Identities=34%  Similarity=0.450  Sum_probs=34.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      ..|.+|.|+|.|.+|..+++.++.+|. +|++.+++.++
T Consensus       148 l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~  185 (334)
T 2dbq_A          148 VYGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTRKE  185 (334)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECCCcch
Confidence            457899999999999999999999999 99999988765

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=90.33  E-value=0.28  Score=41.24  Aligned_cols=40  Identities=30%  Similarity=0.233  Sum_probs=32.1

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC--eEEEEcCCchhhh
Q 026140          201 VGSTVVIFGL-GSIGLAVAEGARLCGAT--RIIGVDVISEKFE  240 (243)
Q Consensus       201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~--~vi~~~~~~~~~~  240 (243)
                      .|+++||.|+ |++|.+++..+...|+.  +|++++++.++++
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~   74 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLE   74 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHH
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHH
Confidence            5789999998 89999988776666542  8999999887654

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=90.10  E-value=0.41  Score=41.53  Aligned_cols=38  Identities=39%  Similarity=0.517  Sum_probs=34.0

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      -.|++|.|+|.|.+|..+++.++.+|+ +|++.+++..+
T Consensus       163 l~g~tvgIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~  200 (335)
T 2g76_A          163 LNGKTLGILGLGRIGREVATRMQSFGM-KTIGYDPIISP  200 (335)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSCH
T ss_pred             CCcCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcch
Confidence            467899999999999999999999999 99999987644

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=90.07  E-value=0.42  Score=41.07  Aligned_cols=38  Identities=32%  Similarity=0.316  Sum_probs=33.8

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC-Cchh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV-ISEK  238 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~-~~~~  238 (243)
                      ..|++|.|+|.|.+|..+++.++.+|+ +|++.++ +.++
T Consensus       144 l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~  182 (320)
T 1gdh_A          144 LDNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASS  182 (320)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcCh
Confidence            467899999999999999999999999 9999998 6644

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=90.06  E-value=0.87  Score=38.57  Aligned_cols=57  Identities=18%  Similarity=0.143  Sum_probs=41.2

Q ss_pred             cccchhhHhHHHHHHHhcCCCCCCEEEEECCC-HHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          180 CLLSCGVSTGVGAAWRTANVEVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       180 a~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG-~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      .+++|.....+..+.+..-.-.|++++|+|.| .+|..+++++..+|+ +|+++.+...
T Consensus       139 ~~~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gA-tVtv~hs~T~  196 (286)
T 4a5o_A          139 LLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGC-TVTVTHRFTR  196 (286)
T ss_dssp             SSCCHHHHHHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTC-EEEEECTTCS
T ss_pred             CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCCc
Confidence            34555555555544333334689999999985 699999999999999 8888876543

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=90.06  E-value=0.81  Score=38.55  Aligned_cols=56  Identities=9%  Similarity=-0.023  Sum_probs=41.5

Q ss_pred             ccchhhHhHHHHHHHhcCCCCCCEEEEECCC-HHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       181 ~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG-~vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                      +++|+....+..+ +..+ -.|++++|+|.| .+|..+++++..+|+ +|+++.+....+
T Consensus       131 ~~PcTp~gv~~lL-~~~~-l~Gk~vvVvG~s~iVG~plA~lL~~~gA-tVtv~~~~t~~L  187 (276)
T 3ngx_A          131 LVPATPRAVIDIM-DYYG-YHENTVTIVNRSPVVGRPLSMMLLNRNY-TVSVCHSKTKDI  187 (276)
T ss_dssp             SCCHHHHHHHHHH-HHHT-CCSCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSCH
T ss_pred             CCCCcHHHHHHHH-HHhC-cCCCEEEEEcCChHHHHHHHHHHHHCCC-eEEEEeCCcccH
Confidence            4555555555544 3444 789999999985 689999999999999 888887655433

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=90.03  E-value=0.29  Score=42.06  Aligned_cols=37  Identities=24%  Similarity=0.231  Sum_probs=33.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      .|++|.|+|.|.+|..+++.++.+|. +|++.+++.++
T Consensus       138 ~g~tvGIiG~G~IG~~vA~~l~~~G~-~V~~~dr~~~~  174 (315)
T 3pp8_A          138 EEFSVGIMGAGVLGAKVAESLQAWGF-PLRCWSRSRKS  174 (315)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTC-CEEEEESSCCC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCchh
Confidence            58899999999999999999999999 89999887654

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=90.00  E-value=0.38  Score=41.60  Aligned_cols=38  Identities=26%  Similarity=0.315  Sum_probs=34.3

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      -.|++|.|+|.|.+|..+++.++.+|. +|++.+++.++
T Consensus       144 l~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~d~~~~~  181 (333)
T 2d0i_A          144 LYGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSRHRKV  181 (333)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCH
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcch
Confidence            467899999999999999999999999 99999988764

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=89.94  E-value=0.36  Score=42.05  Aligned_cols=39  Identities=26%  Similarity=0.306  Sum_probs=34.6

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCCchh
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEK  238 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~-~~g~~~vi~~~~~~~~  238 (243)
                      --.|++|.|+|.|.+|..+++.++ .+|. +|++.+++.++
T Consensus       160 ~l~g~~vgIIG~G~IG~~vA~~l~~~~G~-~V~~~d~~~~~  199 (348)
T 2w2k_A          160 NPRGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVAPAD  199 (348)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSCCC
T ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHhcCC-EEEEECCCCcc
Confidence            356889999999999999999999 9999 99999987654

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=89.63  E-value=0.44  Score=41.45  Aligned_cols=37  Identities=41%  Similarity=0.483  Sum_probs=33.8

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      .|++|.|+|.|.+|..+++.++.+|+ +|++.+++.++
T Consensus       147 ~gktvgIiGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~  183 (343)
T 2yq5_A          147 YNLTVGLIGVGHIGSAVAEIFSAMGA-KVIAYDVAYNP  183 (343)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCG
T ss_pred             CCCeEEEEecCHHHHHHHHHHhhCCC-EEEEECCChhh
Confidence            47899999999999999999999999 99999988654

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=89.61  E-value=0.36  Score=39.83  Aligned_cols=35  Identities=14%  Similarity=0.201  Sum_probs=29.6

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      ..++++||.|+ |++|..++..+...|+ +|+++++.
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~   58 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHDAGM-AVAVSHSE   58 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEECS
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCC
Confidence            35788999998 8999999999989999 89888743

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=89.59  E-value=0.36  Score=41.65  Aligned_cols=37  Identities=32%  Similarity=0.348  Sum_probs=33.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      .|.+|.|+|.|.+|..+++.++.+|. +|++.+++.++
T Consensus       154 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~  190 (330)
T 2gcg_A          154 TQSTVGIIGLGRIGQAIARRLKPFGV-QRFLYTGRQPR  190 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-CEEEEESSSCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcc
Confidence            47899999999999999999999999 89999987643

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=89.56  E-value=0.42  Score=41.66  Aligned_cols=36  Identities=36%  Similarity=0.425  Sum_probs=32.9

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      .|++|.|+|.|.+|..+++.++.+|. +|++.+++..
T Consensus       172 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~  207 (345)
T 4g2n_A          172 TGRRLGIFGMGRIGRAIATRARGFGL-AIHYHNRTRL  207 (345)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHTTTC-EEEEECSSCC
T ss_pred             CCCEEEEEEeChhHHHHHHHHHHCCC-EEEEECCCCc
Confidence            47899999999999999999999999 9999998753

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=89.42  E-value=0.23  Score=45.71  Aligned_cols=39  Identities=33%  Similarity=0.450  Sum_probs=31.5

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      .+++++|+|+|++|.+++..+...|+ +|+++.|+.++.+
T Consensus       363 ~~k~vlV~GaGGig~aia~~L~~~G~-~V~i~~R~~~~a~  401 (523)
T 2o7s_A          363 ASKTVVVIGAGGAGKALAYGAKEKGA-KVVIANRTYERAL  401 (523)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHHCC--CEEEESSHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence            46789999999999999999999999 8999999877654

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=89.27  E-value=0.3  Score=42.24  Aligned_cols=35  Identities=31%  Similarity=0.424  Sum_probs=32.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      .|++|.|+|.|.+|..+++.++.+|+ +|++.+++.
T Consensus       144 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~  178 (330)
T 4e5n_A          144 DNATVGFLGMGAIGLAMADRLQGWGA-TLQYHEAKA  178 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHTTTSCC-EEEEECSSC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            57899999999999999999999999 999999876

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=89.18  E-value=0.45  Score=37.53  Aligned_cols=48  Identities=23%  Similarity=0.356  Sum_probs=38.2

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCchhhhcC
Q 026140          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG--ATRIIGVDVISEKFEIG  242 (243)
Q Consensus       193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g--~~~vi~~~~~~~~~~~~  242 (243)
                      +.......++++||.+|+| .|..+..+++..+  . +|++++.+++.++.+
T Consensus        69 ~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~-~v~~vD~~~~~~~~a  118 (215)
T 2yxe_A           69 MCELLDLKPGMKVLEIGTG-CGYHAAVTAEIVGEDG-LVVSIERIPELAEKA  118 (215)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTS-EEEEEESCHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCC-ccHHHHHHHHHhCCCC-EEEEEeCCHHHHHHH
Confidence            4456678899999999987 4888888888876  5 899999988765543

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=89.10  E-value=0.41  Score=41.81  Aligned_cols=36  Identities=22%  Similarity=0.328  Sum_probs=33.1

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      -.|++|.|+|.|.+|..+++.++.+|+ +|++.+++.
T Consensus       162 l~gktvGIIG~G~IG~~vA~~l~~~G~-~V~~~dr~~  197 (351)
T 3jtm_A          162 LEGKTIGTVGAGRIGKLLLQRLKPFGC-NLLYHDRLQ  197 (351)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGCC-EEEEECSSC
T ss_pred             ccCCEEeEEEeCHHHHHHHHHHHHCCC-EEEEeCCCc
Confidence            468899999999999999999999999 899999875

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=89.07  E-value=0.5  Score=41.24  Aligned_cols=36  Identities=33%  Similarity=0.419  Sum_probs=32.9

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      .|++|.|+|.|.+|..+++.++.+|+ +|++.+++..
T Consensus       159 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~  194 (352)
T 3gg9_A          159 KGQTLGIFGYGKIGQLVAGYGRAFGM-NVLVWGRENS  194 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSHHH
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEECCCCC
Confidence            57899999999999999999999999 9999998753

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=89.05  E-value=0.47  Score=42.51  Aligned_cols=42  Identities=24%  Similarity=0.254  Sum_probs=33.3

Q ss_pred             hcCC-CCCCEEEEECC-CHHHHHHHHHHHH-cCCCeEEEEcCCchh
Q 026140          196 TANV-EVGSTVVIFGL-GSIGLAVAEGARL-CGATRIIGVDVISEK  238 (243)
Q Consensus       196 ~~~~-~~g~~VlI~Ga-G~vG~~~v~la~~-~g~~~vi~~~~~~~~  238 (243)
                      ...+ +.++++||.|+ +++|.+.+..+.. .|+ +|++++++.++
T Consensus        54 ~~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA-~Vv~~~r~~~~   98 (422)
T 3s8m_A           54 RGVRNDGPKKVLVIGASSGYGLASRITAAFGFGA-DTLGVFFEKPG   98 (422)
T ss_dssp             TCCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCC
T ss_pred             ccccccCCCEEEEECCChHHHHHHHHHHHHhCCC-EEEEEeCCchh
Confidence            3445 45788999998 7999998887777 999 89999877554

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=89.05  E-value=0.4  Score=40.46  Aligned_cols=48  Identities=15%  Similarity=0.260  Sum_probs=38.8

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +.....+.++++||-+|.|. |..+..+++..|+ +|++++.+++.++.+
T Consensus        82 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a  129 (318)
T 2fk8_A           82 NLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARC  129 (318)
T ss_dssp             HHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHH
T ss_pred             HHHhcCCCCcCEEEEEcccc-hHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            45566788999999999866 7778888887788 999999998766543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=89.01  E-value=0.29  Score=37.21  Aligned_cols=49  Identities=22%  Similarity=0.099  Sum_probs=38.3

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +.......++++||-+|.|. |..+..+++..+..+|++++.+++.++.+
T Consensus        17 ~~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a   65 (178)
T 3hm2_A           17 AISALAPKPHETLWDIGGGS-GSIAIEWLRSTPQTTAVCFEISEERRERI   65 (178)
T ss_dssp             HHHHHCCCTTEEEEEESTTT-THHHHHHHTTSSSEEEEEECSCHHHHHHH
T ss_pred             HHHHhcccCCCeEEEeCCCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHH
Confidence            34556778999999999875 88888888887444999999998766543

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=89.01  E-value=0.65  Score=40.38  Aligned_cols=36  Identities=25%  Similarity=0.366  Sum_probs=32.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      .+.+|+|+|+|++|..++..+...|.++++.+|...
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             hCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            468999999999999999999999999999998754

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=89.01  E-value=0.55  Score=39.92  Aligned_cols=35  Identities=20%  Similarity=0.246  Sum_probs=30.4

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      .+.+|||.|+ |.+|..+++.+...|. +|++++++.
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   61 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLMMDGH-EVTVVDNFF   61 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCS
T ss_pred             CCCEEEEEcCccHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            4678999998 9999999999888999 899998754

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=88.89  E-value=0.53  Score=40.66  Aligned_cols=35  Identities=23%  Similarity=0.166  Sum_probs=31.1

Q ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       203 ~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      ++|||.|+ |.+|..++..+...|. +|++++++..+
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~-~V~~~~r~~~~   64 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY-EVHGLIRRSSN   64 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSS
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC-EEEEEecCCcc
Confidence            68999998 9999999999988998 99999987654

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=88.88  E-value=0.61  Score=40.33  Aligned_cols=37  Identities=19%  Similarity=0.274  Sum_probs=32.0

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcC-CCeEEEEcCCchh
Q 026140          201 VGSTVVIFGL-GSIGLAVAEGARLCG-ATRIIGVDVISEK  238 (243)
Q Consensus       201 ~g~~VlI~Ga-G~vG~~~v~la~~~g-~~~vi~~~~~~~~  238 (243)
                      .+.+|||.|+ |.+|..++..+...| . +|++++++..+
T Consensus        31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~   69 (377)
T 2q1s_A           31 ANTNVMVVGGAGFVGSNLVKRLLELGVN-QVHVVDNLLSA   69 (377)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCS-EEEEECCCTTC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCc-eEEEEECCCCC
Confidence            3578999998 999999999998899 8 99999987643

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=88.86  E-value=0.44  Score=38.91  Aligned_cols=36  Identities=28%  Similarity=0.268  Sum_probs=31.8

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      -.|++|||+|+|.+|...+..+...|+ +|++++...
T Consensus        29 L~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~~   64 (223)
T 3dfz_A           29 LKGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPTV   64 (223)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSSC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            468899999999999999999999999 888887654

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=88.78  E-value=0.59  Score=40.75  Aligned_cols=35  Identities=23%  Similarity=0.319  Sum_probs=30.7

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       202 g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      ...|+|+|+|+.|++++..+...|. +|+++++.+.
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   60 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNGI-DVSVYERDND   60 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTC-EEEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence            4579999999999999999988999 9999997653

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=88.76  E-value=0.46  Score=38.10  Aligned_cols=38  Identities=16%  Similarity=0.170  Sum_probs=32.4

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       202 g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..+|.|+|+|.+|...+..+...|. +|++.++++++.+
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~-~V~~~~r~~~~~~   65 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGF-KVVVGSRNPKRTA   65 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTC-CEEEEESSHHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            4579999999999999888888898 8999999887654

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=88.73  E-value=0.64  Score=39.63  Aligned_cols=34  Identities=24%  Similarity=0.372  Sum_probs=30.5

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       202 g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      +.+|||.|+ |.+|..++..+...|. +|++++++.
T Consensus        27 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   61 (352)
T 1sb8_A           27 PKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDNFA   61 (352)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            578999998 9999999999988999 899999865

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=88.73  E-value=0.51  Score=41.22  Aligned_cols=35  Identities=20%  Similarity=0.277  Sum_probs=30.6

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       202 g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      .-.|+|+|+|+.|++++..+...|. +|+++++.+.
T Consensus        23 ~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~E~~~~   57 (407)
T 3rp8_A           23 HMKAIVIGAGIGGLSAAVALKQSGI-DCDVYEAVKE   57 (407)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCCC
Confidence            4579999999999999999999999 8999987653

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=88.67  E-value=0.47  Score=42.11  Aligned_cols=35  Identities=17%  Similarity=0.140  Sum_probs=29.9

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ....|+|+|+|+.|++++..+...|. +|+++++.+
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G~-~V~viE~~~   55 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHDV-DVTVYTDRK   55 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTTC-EEEEEESCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCC-eEEEEcCCC
Confidence            34679999999999999998888999 999998765

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=88.54  E-value=0.6  Score=40.47  Aligned_cols=37  Identities=22%  Similarity=0.232  Sum_probs=32.0

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      .+.+|||.|+ |.+|..+++.+...|. +|++++++..+
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~   65 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGH-YVIASDWKKNE   65 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCS
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEECCCcc
Confidence            3468999998 9999999998888998 99999987654

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=88.50  E-value=0.58  Score=42.63  Aligned_cols=36  Identities=28%  Similarity=0.292  Sum_probs=32.6

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       202 g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      +.+|||.|+ |.+|..++..+...|. +|++++++..+
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~-~V~~l~R~~~~  183 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGH-EVIQLVRKEPK  183 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCC
Confidence            679999998 9999999999999999 99999998765

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=88.47  E-value=0.41  Score=41.98  Aligned_cols=37  Identities=24%  Similarity=0.293  Sum_probs=33.2

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCe-EEEEcCCch
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATR-IIGVDVISE  237 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~-vi~~~~~~~  237 (243)
                      -.|++|.|+|.|.+|..+++.++.+|+ + |++.+++..
T Consensus       162 l~g~tvgIIG~G~IG~~vA~~l~~~G~-~~V~~~d~~~~  199 (364)
T 2j6i_A          162 IEGKTIATIGAGRIGYRVLERLVPFNP-KELLYYDYQAL  199 (364)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGCC-SEEEEECSSCC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEECCCcc
Confidence            468899999999999999999999999 6 999997763

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=88.44  E-value=0.62  Score=40.48  Aligned_cols=38  Identities=26%  Similarity=0.340  Sum_probs=33.9

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      -.|++|.|+|.|.+|..+++.++.+|. +|++.+++.++
T Consensus       169 l~gktiGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~  206 (340)
T 4dgs_A          169 PKGKRIGVLGLGQIGRALASRAEAFGM-SVRYWNRSTLS  206 (340)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCT
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCccc
Confidence            347899999999999999999999999 99999987654

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=88.43  E-value=0.95  Score=38.24  Aligned_cols=58  Identities=19%  Similarity=0.154  Sum_probs=41.2

Q ss_pred             cccchhhHhHHHHHHHhcCCCCCCEEEEECCC-HHHHHHHHHHHHc--CCCeEEEEcCCchh
Q 026140          180 CLLSCGVSTGVGAAWRTANVEVGSTVVIFGLG-SIGLAVAEGARLC--GATRIIGVDVISEK  238 (243)
Q Consensus       180 a~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG-~vG~~~v~la~~~--g~~~vi~~~~~~~~  238 (243)
                      .+++|....+...+.+...--.|++++|+|.| .+|..+++++...  |+ +|++..+....
T Consensus       136 ~~~PcTp~gi~~ll~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~a-tVtv~h~~t~~  196 (281)
T 2c2x_A          136 APLPCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENA-TVTLCHTGTRD  196 (281)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCC-EEEEECTTCSC
T ss_pred             CCCCChHHHHHHHHHHcCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCC-EEEEEECchhH
Confidence            34565555455534333325689999999997 5799999999998  88 88888766543

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=88.38  E-value=0.48  Score=42.07  Aligned_cols=37  Identities=22%  Similarity=0.074  Sum_probs=33.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      -.|++|.|+|.|.+|..+++.++.+|. +|++.+++..
T Consensus       189 l~gktvGIIGlG~IG~~vA~~l~a~G~-~V~~~d~~~~  225 (393)
T 2nac_A          189 LEAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRL  225 (393)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCC
T ss_pred             CCCCEEEEEeECHHHHHHHHHHHhCCC-EEEEEcCCcc
Confidence            368899999999999999999999999 9999998753

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=88.27  E-value=0.56  Score=39.29  Aligned_cols=48  Identities=21%  Similarity=0.344  Sum_probs=39.3

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +.....++++++||-+|.|. |..+..+++..|+ +|++++.+++.++.+
T Consensus        64 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a  111 (302)
T 3hem_A           64 ALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHD  111 (302)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEECCHHHHHHH
T ss_pred             HHHHcCCCCcCEEEEeeccC-cHHHHHHHHhCCC-EEEEEECCHHHHHHH
Confidence            45667789999999999874 7788888888887 999999998766543

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=88.24  E-value=0.66  Score=40.40  Aligned_cols=37  Identities=35%  Similarity=0.408  Sum_probs=33.2

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      -.|++|.|+|.|.+|..+++.++.+|+ +|++.+++..
T Consensus       166 l~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~  202 (347)
T 1mx3_A          166 IRGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLS  202 (347)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSC
T ss_pred             CCCCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcc
Confidence            367899999999999999999999999 8999987654

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=88.22  E-value=0.5  Score=40.93  Aligned_cols=38  Identities=39%  Similarity=0.399  Sum_probs=33.7

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      -.|++|.|+|.|.+|..+++.++.+|. +|++.+++.++
T Consensus       162 l~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~dr~~~~  199 (333)
T 3ba1_A          162 FSGKRVGIIGLGRIGLAVAERAEAFDC-PISYFSRSKKP  199 (333)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTC-CEEEECSSCCT
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCchh
Confidence            357899999999999999999999999 89999987654

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=88.15  E-value=0.62  Score=38.68  Aligned_cols=37  Identities=24%  Similarity=0.292  Sum_probs=31.7

Q ss_pred             CCCCCEEEEECC-CH--HHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          199 VEVGSTVVIFGL-GS--IGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       199 ~~~g~~VlI~Ga-G~--vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ...++++||.|+ |.  +|..++..+...|+ +|++++++.
T Consensus        23 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~   62 (280)
T 3nrc_A           23 FLAGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVGQ   62 (280)
T ss_dssp             TTTTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECTT
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCch
Confidence            356889999996 55  99999998889999 899999886

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=88.11  E-value=0.63  Score=36.49  Aligned_cols=47  Identities=21%  Similarity=0.104  Sum_probs=37.0

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +......+++++||-+|+| .|..+..+++. +. +|++++.+++.++.+
T Consensus        69 ~~~~l~~~~~~~vLdiG~G-~G~~~~~la~~-~~-~v~~vD~~~~~~~~a  115 (210)
T 3lbf_A           69 MTELLELTPQSRVLEIGTG-SGYQTAILAHL-VQ-HVCSVERIKGLQWQA  115 (210)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEEESCHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEEcCC-CCHHHHHHHHh-CC-EEEEEecCHHHHHHH
Confidence            4456778899999999987 37777777777 66 999999998766543

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=88.07  E-value=0.39  Score=38.73  Aligned_cols=48  Identities=21%  Similarity=0.310  Sum_probs=38.3

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +.......++++||-+|+| .|..+..+++..+. +|++++.+++.++.+
T Consensus        83 ~~~~l~~~~~~~vLdiG~G-~G~~~~~la~~~~~-~v~~vD~~~~~~~~a  130 (235)
T 1jg1_A           83 MLEIANLKPGMNILEVGTG-SGWNAALISEIVKT-DVYTIERIPELVEFA  130 (235)
T ss_dssp             HHHHHTCCTTCCEEEECCT-TSHHHHHHHHHHCS-CEEEEESCHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEEeCC-cCHHHHHHHHHhCC-EEEEEeCCHHHHHHH
Confidence            3455678899999999987 68888888888774 899999988765543

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=88.03  E-value=0.7  Score=39.39  Aligned_cols=37  Identities=30%  Similarity=0.460  Sum_probs=33.0

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      -.|++|.|+|.|.+|..+++.++.+|. +|++.+++.+
T Consensus       122 l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~dr~~~  158 (303)
T 1qp8_A          122 IQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPK  158 (303)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcc
Confidence            357899999999999999999999999 8999997654

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=88.03  E-value=0.53  Score=40.28  Aligned_cols=37  Identities=24%  Similarity=0.390  Sum_probs=29.9

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcC-CCeEEEEcCCchh
Q 026140          201 VGSTVVIFGL-GSIGLAVAEGARLCG-ATRIIGVDVISEK  238 (243)
Q Consensus       201 ~g~~VlI~Ga-G~vG~~~v~la~~~g-~~~vi~~~~~~~~  238 (243)
                      ++.+|||.|+ |.+|..++..+...| . +|+++++++.+
T Consensus        45 ~~~~vlVtGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~   83 (357)
T 2x6t_A           45 EGRMIIVTGGAGFIGSNIVKALNDKGIT-DILVVDNLKDG   83 (357)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCC-CEEEEECCSSG
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCc-EEEEEecCCCc
Confidence            4578999998 999999999998899 7 89999887654

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=87.95  E-value=0.74  Score=40.74  Aligned_cols=36  Identities=22%  Similarity=0.290  Sum_probs=32.5

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      +..+++|+|+|.++.+++++++.+|+ +|+++|..++
T Consensus       203 P~~rL~IfGAGhva~ala~~a~~lg~-~V~v~D~R~~  238 (386)
T 2we8_A          203 PRPRMLVFGAIDFAAAVAQQGAFLGY-RVTVCDARPV  238 (386)
T ss_dssp             CCCEEEEECCSTHHHHHHHHHHHTTC-EEEEEESCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCchh
Confidence            56789999999999999999999999 8999987654

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=87.95  E-value=0.63  Score=39.57  Aligned_cols=36  Identities=28%  Similarity=0.412  Sum_probs=32.5

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ...+|+|+|+|++|..++..+...|.+++.++|...
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            557999999999999999999999999999999765

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=87.81  E-value=0.69  Score=39.83  Aligned_cols=34  Identities=26%  Similarity=0.231  Sum_probs=30.3

Q ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       203 ~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      ++|||.|+ |.+|..+++.+...|. +|++++++..
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~   59 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGY-EVHGIVRRSS   59 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCS
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCcc
Confidence            68999998 9999999999988998 9999998754

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=87.68  E-value=0.61  Score=38.35  Aligned_cols=37  Identities=22%  Similarity=0.163  Sum_probs=29.9

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEE-EcCCchh
Q 026140          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIG-VDVISEK  238 (243)
Q Consensus       201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~-~~~~~~~  238 (243)
                      .++++||.|+ |++|..++..+...|+ +|++ ..++.++
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~~G~-~v~i~~~r~~~~   63 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAADGF-NIGVHYHRDAAG   63 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCchHH
Confidence            5689999998 8999999999999999 7755 4555544

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=87.66  E-value=0.87  Score=41.39  Aligned_cols=39  Identities=23%  Similarity=0.221  Sum_probs=33.8

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       199 ~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      +.+++++||.|+ |++|..++..+...|+.+|+.++++..
T Consensus       223 ~~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~  262 (486)
T 2fr1_A          223 WKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGP  262 (486)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGG
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence            578899999998 999999988888889966999988764

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=87.49  E-value=0.87  Score=41.36  Aligned_cols=37  Identities=27%  Similarity=0.376  Sum_probs=31.6

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ......|+|+|+|+.|+.++..+...|. +|+++++.+
T Consensus        89 ~~~~~dVvIVGgG~aGl~aA~~La~~G~-~V~liEk~~  125 (497)
T 2bry_A           89 ACTNTKCLVVGAGPCGLRAAVELALLGA-RVVLVEKRI  125 (497)
T ss_dssp             TTTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCS
T ss_pred             ccCCCCEEEECccHHHHHHHHHHHHCCC-eEEEEEecc
Confidence            3456789999999999999888888999 899998764

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=87.33  E-value=0.81  Score=41.24  Aligned_cols=39  Identities=18%  Similarity=0.106  Sum_probs=32.7

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHc---CCCeEEEEcCCchh
Q 026140          199 VEVGSTVVIFGL-GSIGLAVAEGARLC---GATRIIGVDVISEK  238 (243)
Q Consensus       199 ~~~g~~VlI~Ga-G~vG~~~v~la~~~---g~~~vi~~~~~~~~  238 (243)
                      ...+++|||.|+ |.+|..++.-+...   |. +|++++|++..
T Consensus        70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~-~V~~l~R~~~~  112 (478)
T 4dqv_A           70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDG-RLICLVRAESD  112 (478)
T ss_dssp             CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTC-EEEEEECSSSH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCC-EEEEEECCCCc
Confidence            456889999998 99999988877777   78 99999987653

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=87.21  E-value=0.87  Score=37.57  Aligned_cols=36  Identities=28%  Similarity=0.333  Sum_probs=31.5

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      .+.+|+|+|+|++|..++..+...|.+++.++|...
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             hcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            357999999999999999999999998999987654

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=87.00  E-value=0.66  Score=37.56  Aligned_cols=49  Identities=18%  Similarity=0.124  Sum_probs=38.6

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCchhhhcC
Q 026140          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIG  242 (243)
Q Consensus       193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g-~~~vi~~~~~~~~~~~~  242 (243)
                      +.....+.++++||-+|+|. |..+..+++..+ ..+|++++.+++.++.+
T Consensus        88 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a  137 (258)
T 2pwy_A           88 MVTLLDLAPGMRVLEAGTGS-GGLTLFLARAVGEKGLVESYEARPHHLAQA  137 (258)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEECCCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHH
Confidence            45567789999999999875 888888888853 33999999988776543

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=87.00  E-value=1.1  Score=41.04  Aligned_cols=39  Identities=28%  Similarity=0.292  Sum_probs=33.7

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       199 ~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      +++++++||.|+ |++|..++..+...|+.+|+.++++..
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~  295 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGP  295 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGG
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCc
Confidence            567899999998 999999998888899967888888763

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=87.00  E-value=0.87  Score=40.20  Aligned_cols=33  Identities=21%  Similarity=0.244  Sum_probs=30.7

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD  233 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~  233 (243)
                      .++.+|+|+|+|.+|..+++.++.+|+ +|++++
T Consensus        22 m~~~~I~ilGgG~lg~~l~~aa~~lG~-~v~~~d   54 (403)
T 3k5i_A           22 WNSRKVGVLGGGQLGRMLVESANRLNI-QVNVLD   54 (403)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEE
Confidence            468899999999999999999999999 899888

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=86.74  E-value=0.87  Score=40.53  Aligned_cols=42  Identities=26%  Similarity=0.381  Sum_probs=32.5

Q ss_pred             hcCC-CCCCEEEEECC-CHHHHHHHHHHHH-cCCCeEEEEcCCchh
Q 026140          196 TANV-EVGSTVVIFGL-GSIGLAVAEGARL-CGATRIIGVDVISEK  238 (243)
Q Consensus       196 ~~~~-~~g~~VlI~Ga-G~vG~~~v~la~~-~g~~~vi~~~~~~~~  238 (243)
                      ...+ ..++++||.|+ +++|.+.+..+.. .|+ +|++++++.++
T Consensus        40 ~~~~~~~gKvaLVTGas~GIG~AiA~~LA~g~GA-~Vv~~~~~~~~   84 (405)
T 3zu3_A           40 EGPIANGPKRVLVIGASTGYGLAARITAAFGCGA-DTLGVFFERPG   84 (405)
T ss_dssp             HCCCTTCCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCC
T ss_pred             cCCcCCCCCEEEEeCcchHHHHHHHHHHHHhcCC-EEEEEeCCchh
Confidence            3444 55677899998 8999998887777 999 89988876543

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=86.74  E-value=0.91  Score=36.64  Aligned_cols=47  Identities=26%  Similarity=0.241  Sum_probs=37.5

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +.....+.++.+||=+|.|. |..+..+++..+. +|++++.++..++.
T Consensus        28 l~~~~~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~l~~   74 (256)
T 1nkv_A           28 LGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQ   74 (256)
T ss_dssp             HHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHH
Confidence            44566788999999998765 7777788888888 89999998866544

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=86.58  E-value=0.78  Score=40.27  Aligned_cols=35  Identities=31%  Similarity=0.319  Sum_probs=32.4

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      .|++|.|+|.|.+|..+++.++.+|+ +|++.+++.
T Consensus       175 ~gktvGIIGlG~IG~~vA~~l~~fG~-~V~~~d~~~  209 (365)
T 4hy3_A          175 AGSEIGIVGFGDLGKALRRVLSGFRA-RIRVFDPWL  209 (365)
T ss_dssp             SSSEEEEECCSHHHHHHHHHHTTSCC-EEEEECSSS
T ss_pred             CCCEEEEecCCcccHHHHHhhhhCCC-EEEEECCCC
Confidence            47899999999999999999999999 999999874

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=86.54  E-value=0.9  Score=39.28  Aligned_cols=36  Identities=28%  Similarity=0.359  Sum_probs=32.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      .|+++.|+|.|.+|..+++.++.+|+ +|++.++...
T Consensus       140 ~g~tvGIiG~G~IG~~va~~~~~fg~-~v~~~d~~~~  175 (334)
T 3kb6_A          140 NRLTLGVIGTGRIGSRVAMYGLAFGM-KVLCYDVVKR  175 (334)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             cCcEEEEECcchHHHHHHHhhcccCc-eeeecCCccc
Confidence            47899999999999999999999999 9999987653

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=86.44  E-value=0.8  Score=38.06  Aligned_cols=37  Identities=22%  Similarity=0.235  Sum_probs=31.9

Q ss_pred             CCCCEEEEECC---CHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          200 EVGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       200 ~~g~~VlI~Ga---G~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      ..|+++||.|+   |++|..++..+...|+ +|++++++++
T Consensus        19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~   58 (285)
T 2p91_A           19 LEGKRALITGVANERSIAYGIAKSFHREGA-QLAFTYATPK   58 (285)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEESSGG
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCCHH
Confidence            46789999986   5999999998888999 8999998764

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=86.33  E-value=1  Score=38.14  Aligned_cols=39  Identities=21%  Similarity=0.176  Sum_probs=34.5

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       202 g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      -.+|.|+|.|.+|...+..+...|. +|++.++++++.+.
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~   59 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTLSKCDE   59 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHH
Confidence            3689999999999999999999999 99999999887654

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=86.14  E-value=0.66  Score=41.93  Aligned_cols=38  Identities=24%  Similarity=0.472  Sum_probs=33.4

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       203 ~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      .+|.|+|+|.+|...++.+...|. .|++.++++++++.
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~~~~~~~   75 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDA   75 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHHH
Confidence            579999999999999998888999 99999999876553

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=86.08  E-value=2  Score=38.66  Aligned_cols=35  Identities=29%  Similarity=0.256  Sum_probs=31.3

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  234 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~  234 (243)
                      --+|++|+|.|.|.+|..+++.+..+|+ +||+++.
T Consensus       232 ~l~Gk~vaVQG~GnVG~~aa~~L~e~Ga-kvVavsD  266 (450)
T 4fcc_A          232 GFEGMRVSVSGSGNVAQYAIEKAMEFGA-RVITASD  266 (450)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEEE
T ss_pred             CcCCCEEEEeCCChHHHHHHHHHHhcCC-eEEEEec
Confidence            4579999999999999999999999999 8887763

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=86.03  E-value=0.82  Score=42.03  Aligned_cols=33  Identities=24%  Similarity=0.305  Sum_probs=29.3

Q ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       204 ~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      .|+|+|+|+.|++++..+...|. +|+++++.+.
T Consensus        28 dVlIVGaGpaGl~~A~~La~~G~-~V~vlEr~~~   60 (549)
T 2r0c_A           28 DVLILGGGPVGMALALDLAHRQV-GHLVVEQTDG   60 (549)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSCS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence            59999999999999988888999 8999997653

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=85.99  E-value=0.61  Score=40.89  Aligned_cols=38  Identities=18%  Similarity=0.147  Sum_probs=33.5

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      .+..+++|+|+|.++.+++++++.+|+ +|++++..++.
T Consensus       197 ~p~~~L~I~GaGhva~aLa~la~~lgf-~V~v~D~R~~~  234 (362)
T 3on5_A          197 SPKERLIIFGAGPDVPPLVTFASNVGF-YTVVTDWRPNQ  234 (362)
T ss_dssp             CCCEEEEEECCSTTHHHHHHHHHHHTE-EEEEEESCGGG
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEECCCccc
Confidence            456689999999999999999999999 89999977653

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=85.73  E-value=1.2  Score=40.00  Aligned_cols=34  Identities=24%  Similarity=0.321  Sum_probs=31.0

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC--CeEEEEc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGA--TRIIGVD  233 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~--~~vi~~~  233 (243)
                      ..+.+++|+|+|+.|.+++..+..+|+  +++++++
T Consensus       184 l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd  219 (439)
T 2dvm_A          184 ISEITLALFGAGAAGFATLRILTEAGVKPENVRVVE  219 (439)
T ss_dssp             TTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence            467899999999999999999999998  7899988

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=85.71  E-value=1.2  Score=39.26  Aligned_cols=38  Identities=21%  Similarity=0.227  Sum_probs=33.6

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       198 ~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      .--.|++|.|+|.|.+|..+++.++.+|. +|++.++..
T Consensus       115 ~~l~gktvGIIGlG~IG~~vA~~l~a~G~-~V~~~d~~~  152 (381)
T 3oet_A          115 FSLRDRTIGIVGVGNVGSRLQTRLEALGI-RTLLCDPPR  152 (381)
T ss_dssp             CCGGGCEEEEECCSHHHHHHHHHHHHTTC-EEEEECHHH
T ss_pred             CccCCCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCh
Confidence            34568999999999999999999999999 999998644

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=85.60  E-value=0.81  Score=37.03  Aligned_cols=47  Identities=21%  Similarity=0.273  Sum_probs=37.5

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +.......++.+||-+|.| .|..+..+++..++ +|++++.+++.++.
T Consensus        47 ~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~-~v~~vD~s~~~~~~   93 (266)
T 3ujc_A           47 ILSDIELNENSKVLDIGSG-LGGGCMYINEKYGA-HTHGIDICSNIVNM   93 (266)
T ss_dssp             HTTTCCCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCC-CCHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence            4566678899999999876 67777788887788 99999999876554

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=85.56  E-value=0.91  Score=40.88  Aligned_cols=36  Identities=31%  Similarity=0.407  Sum_probs=31.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      +++++||.|+ |++|..++..+...|+ +|++++++..
T Consensus       212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga-~Vvl~~r~~~  248 (454)
T 3u0b_A          212 DGKVAVVTGAARGIGATIAEVFARDGA-TVVAIDVDGA  248 (454)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECGGG
T ss_pred             CCCEEEEeCCchHHHHHHHHHHHHCCC-EEEEEeCCcc
Confidence            5789999998 9999999988888999 8999987643

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=85.50  E-value=0.87  Score=40.46  Aligned_cols=33  Identities=33%  Similarity=0.477  Sum_probs=29.2

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       203 ~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      -.|+|+|+|+.|++++..+...|. +|+++++.+
T Consensus        28 ~dViIIGgG~AGl~aA~~La~~G~-~V~llEk~~   60 (417)
T 3v76_A           28 QDVVIIGAGAAGMMCAIEAGKRGR-RVLVIDHAR   60 (417)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            468999999999999988888999 899998765

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=85.48  E-value=0.89  Score=38.74  Aligned_cols=40  Identities=18%  Similarity=0.235  Sum_probs=34.8

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ...+|.|+|.|.+|...++.+...|. +|++.++++++.+.
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~   69 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRTPARAAS   69 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSCHHHHHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCCHHHHHH
Confidence            34689999999999999999989999 89999999887653

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=85.41  E-value=0.49  Score=42.94  Aligned_cols=39  Identities=13%  Similarity=0.173  Sum_probs=32.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCchhhh
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFE  240 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~-g~~~vi~~~~~~~~~~  240 (243)
                      .+++|+|+|+|.+|..++..+... +. +|++++++.++.+
T Consensus        22 ~~k~VlIiGAGgiG~aia~~L~~~~g~-~V~v~~R~~~ka~   61 (467)
T 2axq_A           22 MGKNVLLLGSGFVAQPVIDTLAANDDI-NVTVACRTLANAQ   61 (467)
T ss_dssp             -CEEEEEECCSTTHHHHHHHHHTSTTE-EEEEEESSHHHHH
T ss_pred             CCCEEEEECChHHHHHHHHHHHhCCCC-eEEEEECCHHHHH
Confidence            457899999999999988888877 67 8999999887653

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=85.36  E-value=0.89  Score=40.92  Aligned_cols=35  Identities=34%  Similarity=0.432  Sum_probs=30.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      .+.+|+|+|+|+.|+.++..++..|. +|+++++.+
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~-~V~v~e~~~  155 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGY-EVHVYDRYD  155 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTC-CEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            46789999999999999998888899 899998764

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=85.30  E-value=0.62  Score=37.44  Aligned_cols=38  Identities=26%  Similarity=0.215  Sum_probs=31.8

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEE-EcCCchhhhc
Q 026140          203 STVVIFGLGSIGLAVAEGARLCGATRIIG-VDVISEKFEI  241 (243)
Q Consensus       203 ~~VlI~GaG~vG~~~v~la~~~g~~~vi~-~~~~~~~~~~  241 (243)
                      .+|.|+|+|.+|.+.+..+...|. +|++ .++++++.+.
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~-~V~~v~~r~~~~~~~   62 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQI-PAIIANSRGPASLSS   62 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTC-CEEEECTTCGGGGHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCCHHHHHH
Confidence            479999999999999888888898 6777 8888877653

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=85.24  E-value=1.8  Score=33.22  Aligned_cols=40  Identities=20%  Similarity=0.210  Sum_probs=33.4

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC---------CeEEEEcCCchh
Q 026140          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGA---------TRIIGVDVISEK  238 (243)
Q Consensus       198 ~~~~g~~VlI~GaG~vG~~~v~la~~~g~---------~~vi~~~~~~~~  238 (243)
                      .++++++||-+|+|+ |..+..+++..+.         .+|++++.++.+
T Consensus        19 ~~~~~~~vLDlGcG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~   67 (196)
T 2nyu_A           19 ILRPGLRVLDCGAAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF   67 (196)
T ss_dssp             CCCTTCEEEEETCCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC
T ss_pred             CCCCCCEEEEeCCCC-CHHHHHHHHHhccccccccCCCceEEEEechhcc
Confidence            368899999999987 8888999998874         489999988743

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=85.23  E-value=0.89  Score=38.05  Aligned_cols=35  Identities=20%  Similarity=0.108  Sum_probs=30.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ....|+|+|+|+.|+.++..++..|. +|+++++.+
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~-~v~vie~~~   55 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEI-KPILYEGMM   55 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC-CCEEECCSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEecCC
Confidence            34689999999999999999999999 899998743

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=85.19  E-value=1.2  Score=37.91  Aligned_cols=40  Identities=30%  Similarity=0.452  Sum_probs=34.0

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEcCCchhhhc
Q 026140          202 GSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEI  241 (243)
Q Consensus       202 g~~VlI~GaG~vG~~~v~la~~~g~~-~vi~~~~~~~~~~~  241 (243)
                      -.+|.|+|.|.+|...+..++..|.. +|++.++++++.+.
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~   73 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISK   73 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHH
Confidence            36899999999999999999888864 79999999877653

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=85.11  E-value=1.3  Score=39.50  Aligned_cols=35  Identities=31%  Similarity=0.349  Sum_probs=32.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      .|+++.|+|-|.+|..+++.++.+|. +|++.++++
T Consensus       155 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~yd~~~  189 (416)
T 3k5p_A          155 RGKTLGIVGYGNIGSQVGNLAESLGM-TVRYYDTSD  189 (416)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECTTC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCcc
Confidence            47899999999999999999999999 999999764

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=84.96  E-value=1.4  Score=38.77  Aligned_cols=40  Identities=20%  Similarity=0.183  Sum_probs=34.5

Q ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       197 ~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      ..--.|++|.|+|.|.+|..+++.++.+|+ +|++.++...
T Consensus       111 ~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~  150 (380)
T 2o4c_A          111 GADLAERTYGVVGAGQVGGRLVEVLRGLGW-KVLVCDPPRQ  150 (380)
T ss_dssp             TCCGGGCEEEEECCSHHHHHHHHHHHHTTC-EEEEECHHHH
T ss_pred             hcccCCCEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcCChh
Confidence            334578999999999999999999999999 9999886543

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=84.79  E-value=1.4  Score=41.33  Aligned_cols=36  Identities=25%  Similarity=0.366  Sum_probs=32.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      .+.+|+|+|+|++|..++..+...|.++++.+|...
T Consensus       325 ~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~  360 (615)
T 4gsl_A          325 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  360 (615)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            467999999999999999999999999999999764

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=84.75  E-value=1.1  Score=37.42  Aligned_cols=36  Identities=8%  Similarity=0.005  Sum_probs=31.5

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      .++++|+|+|+|.+|+-+++.++.+|. +|.++.+.+
T Consensus       143 ~~~k~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~~  178 (312)
T 4gcm_A          143 FKNKRLFVIGGGDSAVEEGTFLTKFAD-KVTIVHRRD  178 (312)
T ss_dssp             GTTCEEEEECCSHHHHHHHHHHTTTCS-EEEEECSSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEeccc
Confidence            467899999999999999898889999 899987654

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=84.63  E-value=1.4  Score=38.28  Aligned_cols=36  Identities=33%  Similarity=0.348  Sum_probs=32.1

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      .+.+|+|+|+|++|..++..+...|.+++..+|...
T Consensus       117 ~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          117 KNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             hCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            357899999999999999999999999999998764

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=84.48  E-value=0.64  Score=41.02  Aligned_cols=38  Identities=16%  Similarity=0.105  Sum_probs=32.4

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       199 ~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      ..++++|||.|+ |.+|..++..+...|. +|+++++++.
T Consensus        66 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~R~~~  104 (427)
T 4f6c_A           66 HRPLGNTLLTGATGFLGAYLIEALQGYSH-RIYCFIRADN  104 (427)
T ss_dssp             CCCCEEEEEECTTSHHHHHHHHHHTTTEE-EEEEEEECSS
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHHcCCC-EEEEEECCCC
Confidence            345679999998 9999998888877888 9999998876

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=84.44  E-value=1.4  Score=39.18  Aligned_cols=37  Identities=24%  Similarity=0.292  Sum_probs=33.2

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      -.|+++.|+|-|.+|..+++.++.+|. +|++.+++.+
T Consensus       143 l~gktlGiIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~  179 (404)
T 1sc6_A          143 ARGKKLGIIGYGHIGTQLGILAESLGM-YVYFYDIENK  179 (404)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHCCC-EEEEEcCCch
Confidence            368899999999999999999999999 9999998653

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=84.33  E-value=1  Score=37.12  Aligned_cols=47  Identities=15%  Similarity=0.267  Sum_probs=37.2

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +....++.++.+||-+|.|. |..+..+++..|+ +|++++.+++.++.
T Consensus        56 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~  102 (287)
T 1kpg_A           56 ALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANH  102 (287)
T ss_dssp             HHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHH
T ss_pred             HHHHcCCCCcCEEEEECCcc-cHHHHHHHHHcCC-EEEEEECCHHHHHH
Confidence            44556788999999998764 6677788877798 99999998876554

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=84.33  E-value=3  Score=37.17  Aligned_cols=35  Identities=26%  Similarity=0.362  Sum_probs=31.3

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCC
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARL-CGATRIIGVDVI  235 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~-~g~~~vi~~~~~  235 (243)
                      -.|++|.|+|.|.+|..++++++. +|+ +|+.++.+
T Consensus       210 l~gktvgI~G~G~VG~~vA~~l~~~~G~-kVv~~sD~  245 (419)
T 1gtm_A          210 LKGKTIAIQGYGNAGYYLAKIMSEDFGM-KVVAVSDS  245 (419)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEEECS
T ss_pred             cCCCEEEEEcCCHHHHHHHHHHHHhcCC-EEEEEeCC
Confidence            478999999999999999999999 999 89988533

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=84.23  E-value=1.1  Score=37.38  Aligned_cols=33  Identities=24%  Similarity=0.325  Sum_probs=28.0

Q ss_pred             CEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCc
Q 026140          203 STVVIFGLGSIGLAVAEGARLC-GATRIIGVDVIS  236 (243)
Q Consensus       203 ~~VlI~GaG~vG~~~v~la~~~-g~~~vi~~~~~~  236 (243)
                      -.|+|+|+|+.|+.++..+... |. +|+++++.+
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~-~V~viEk~~   73 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQSV   73 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTS-CEEEEESSS
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCC-eEEEEECCC
Confidence            3699999999999988888876 99 899998764

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=84.16  E-value=1.3  Score=35.12  Aligned_cols=44  Identities=20%  Similarity=0.294  Sum_probs=35.0

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-----CCeEEEEcCCchhhhcC
Q 026140          198 NVEVGSTVVIFGLGSIGLAVAEGARLCG-----ATRIIGVDVISEKFEIG  242 (243)
Q Consensus       198 ~~~~g~~VlI~GaG~vG~~~v~la~~~g-----~~~vi~~~~~~~~~~~~  242 (243)
                      .++++++||-+|+|. |..+..+++..+     ..+|++++.+++.++.+
T Consensus        77 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a  125 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFS  125 (227)
T ss_dssp             TSCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHH
T ss_pred             hCCCCCEEEEECCCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHH
Confidence            578899999999876 788888888875     22899999998766543

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=83.97  E-value=1.4  Score=41.21  Aligned_cols=35  Identities=26%  Similarity=0.362  Sum_probs=31.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      .+.+|+|+|+|++|..++..+...|.+++..+|..
T Consensus       326 ~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D  360 (598)
T 3vh1_A          326 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG  360 (598)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            35799999999999999999999999999999865

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=83.94  E-value=1.2  Score=37.62  Aligned_cols=37  Identities=19%  Similarity=0.313  Sum_probs=32.5

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       203 ~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      .+|.|+|+|.+|...+..+...|. +|++.++++++.+
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~   67 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRTAEKCD   67 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSGGGGH
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCCHHHHH
Confidence            579999999999999888888898 8999999887754

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=83.80  E-value=0.7  Score=43.29  Aligned_cols=34  Identities=24%  Similarity=0.235  Sum_probs=28.9

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  234 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~  234 (243)
                      -.|+++||.|+ +++|.+.+..+...|+ +|+++++
T Consensus        17 l~gk~~lVTGas~GIG~aiA~~La~~Ga-~Vv~~~r   51 (613)
T 3oml_A           17 YDGRVAVVTGAGAGLGREYALLFAERGA-KVVVNDL   51 (613)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEC--
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            46889999998 8999999999889999 9999876

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=83.71  E-value=0.85  Score=37.30  Aligned_cols=38  Identities=24%  Similarity=0.310  Sum_probs=31.5

Q ss_pred             CCCCEEEEECC---CHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          200 EVGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       200 ~~g~~VlI~Ga---G~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      ..|+++||.|+   +++|..++..+...|+ +|++++++..+
T Consensus        18 l~~k~vlITGas~~~giG~~~a~~l~~~G~-~v~~~~~~~~~   58 (267)
T 3gdg_A           18 LKGKVVVVTGASGPKGMGIEAARGCAEMGA-AVAITYASRAQ   58 (267)
T ss_dssp             CTTCEEEETTCCSSSSHHHHHHHHHHHTSC-EEEECBSSSSS
T ss_pred             cCCCEEEEECCCCCCChHHHHHHHHHHCCC-eEEEEeCCcch
Confidence            46789999986   4999999998889999 89998877543

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=83.66  E-value=1.1  Score=41.41  Aligned_cols=33  Identities=30%  Similarity=0.483  Sum_probs=29.0

Q ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       204 ~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      .|+|+|+|+.|++++..+...|. +|+++++.+.
T Consensus        51 DVvIVGaG~aGL~~A~~La~~G~-~V~VlEr~~~   83 (570)
T 3fmw_A           51 DVVVVGGGPVGLMLAGELRAGGV-GALVLEKLVE   83 (570)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTC-CEEEEBSCSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEcCCCC
Confidence            59999999999999888888999 8999987653

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=83.58  E-value=1.4  Score=39.26  Aligned_cols=40  Identities=25%  Similarity=0.251  Sum_probs=30.4

Q ss_pred             cCCCCCCEEEEECC-CHHHHH--HHHHHHHcCCCeEEEEcCCch
Q 026140          197 ANVEVGSTVVIFGL-GSIGLA--VAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       197 ~~~~~g~~VlI~Ga-G~vG~~--~v~la~~~g~~~vi~~~~~~~  237 (243)
                      .....|+++||.|+ +++|.+  .+......|+ +|++++++..
T Consensus        55 ~~~~~gK~aLVTGassGIG~A~aia~ala~~Ga-~Vi~~~r~~~   97 (418)
T 4eue_A           55 IGFRGPKKVLIVGASSGFGLATRISVAFGGPEA-HTIGVSYETG   97 (418)
T ss_dssp             CCCCCCSEEEEESCSSHHHHHHHHHHHHSSSCC-EEEEEECCCC
T ss_pred             CcCCCCCEEEEECCCcHHHHHHHHHHHHHhCCC-EEEEEecCcc
Confidence            44577899999998 899998  4444445699 8999887653

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=83.47  E-value=1.5  Score=34.81  Aligned_cols=44  Identities=32%  Similarity=0.499  Sum_probs=34.3

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCchhhhcC
Q 026140          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIG  242 (243)
Q Consensus       198 ~~~~g~~VlI~GaG~vG~~~v~la~~~g~-~~vi~~~~~~~~~~~~  242 (243)
                      ..+++++||-+|+|. |..+..+++..|. .+|++++.++..++.+
T Consensus        74 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a  118 (226)
T 1i1n_A           74 QLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDS  118 (226)
T ss_dssp             TSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHH
T ss_pred             hCCCCCEEEEEcCCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Confidence            378899999999865 7777788887763 2899999998776543

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=83.22  E-value=3.8  Score=36.57  Aligned_cols=35  Identities=37%  Similarity=0.465  Sum_probs=30.3

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEE-EEcC
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRII-GVDV  234 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi-~~~~  234 (243)
                      --+|++|+|.|.|.+|..+++++...|+ +|+ +.++
T Consensus       215 ~l~gk~vaVqG~GnVG~~~a~~L~~~Ga-kVVavsD~  250 (419)
T 3aoe_E          215 DLRGARVVVQGLGQVGAAVALHAERLGM-RVVAVATS  250 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEEET
T ss_pred             CccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEEcC
Confidence            3578999999999999999999999999 888 4444

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=83.19  E-value=1.3  Score=39.51  Aligned_cols=32  Identities=34%  Similarity=0.442  Sum_probs=28.1

Q ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       204 ~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      .|+|+|+|+.|++++..+...|. +|+++++.+
T Consensus        28 dVvIIGgG~aGl~aA~~la~~G~-~V~llEk~~   59 (447)
T 2i0z_A           28 DVIVIGGGPSGLMAAIGAAEEGA-NVLLLDKGN   59 (447)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHHCCC-CEEEEECCC
Confidence            58999999999998888888899 899999765

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=83.13  E-value=1.1  Score=33.97  Aligned_cols=46  Identities=22%  Similarity=0.156  Sum_probs=35.2

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +.......++++||-+|+|. |..+..+++.. . ++++++.++..++.
T Consensus        25 ~~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~-~-~v~~~D~~~~~~~~   70 (192)
T 1l3i_A           25 IMCLAEPGKNDVAVDVGCGT-GGVTLELAGRV-R-RVYAIDRNPEAIST   70 (192)
T ss_dssp             HHHHHCCCTTCEEEEESCTT-SHHHHHHHTTS-S-EEEEEESCHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCC-CHHHHHHHHhc-C-EEEEEECCHHHHHH
Confidence            34556788999999999866 77777777665 5 99999998876554

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=83.06  E-value=2  Score=39.18  Aligned_cols=34  Identities=26%  Similarity=0.288  Sum_probs=30.1

Q ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       203 ~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      +++||.|+ |++|..++..+...|+.+|+.+.++.
T Consensus       240 ~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~  274 (496)
T 3mje_A          240 GSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRG  274 (496)
T ss_dssp             SEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSG
T ss_pred             CEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCC
Confidence            89999998 99999999888889997888888864

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=82.84  E-value=1.6  Score=39.09  Aligned_cols=36  Identities=25%  Similarity=0.269  Sum_probs=31.2

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      .....|+|+|+|..|+.++..+...|. +|+++..++
T Consensus        31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g~-~v~vlE~~~   66 (498)
T 2iid_A           31 SNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASE   66 (498)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCC-eEEEEECCC
Confidence            346789999999999999999998999 899998664

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=82.73  E-value=4.3  Score=34.63  Aligned_cols=41  Identities=17%  Similarity=0.135  Sum_probs=33.7

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARL-CGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~-~g~~~vi~~~~~~~~~~  240 (243)
                      ....+++|+|+|..|...+..+.. .+..+|.+.+++.++.+
T Consensus       123 ~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~  164 (322)
T 1omo_A          123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAK  164 (322)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHH
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHH
Confidence            567899999999999988776655 57779999999987754

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=82.55  E-value=1.5  Score=36.40  Aligned_cols=37  Identities=14%  Similarity=0.179  Sum_probs=32.6

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ...+++++|+|+|.+|+-+++.+..+|. +|+++.+.+
T Consensus       149 ~~~~~~vvViGgG~ig~e~A~~l~~~G~-~Vt~v~~~~  185 (314)
T 4a5l_A          149 IFRNKVLMVVGGGDAAMEEALHLTKYGS-KVIILHRRD  185 (314)
T ss_dssp             GGTTSEEEEECSSHHHHHHHHHHTTTSS-EEEEECSSS
T ss_pred             hcCCCeEEEECCChHHHHHHHHHHHhCC-eeeeecccc
Confidence            4578999999999999999999999999 899887654

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=82.53  E-value=1.2  Score=37.65  Aligned_cols=36  Identities=19%  Similarity=0.223  Sum_probs=28.9

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcC--CCeEEEEcCCc
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCG--ATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g--~~~vi~~~~~~  236 (243)
                      ..+.+|||.|+ |.+|..++..+...|  . +|+++++..
T Consensus        22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~-~v~~~~~~~   60 (346)
T 4egb_A           22 SNAMNILVTGGAGFIGSNFVHYMLQSYETY-KIINFDALT   60 (346)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHHCTTE-EEEEEECCC
T ss_pred             cCCCeEEEECCccHHHHHHHHHHHhhCCCc-EEEEEeccc
Confidence            35678999998 999999999998888  6 788887654

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=82.51  E-value=1.5  Score=40.21  Aligned_cols=38  Identities=16%  Similarity=0.099  Sum_probs=31.9

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEE-cCCc
Q 026140          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVIS  236 (243)
Q Consensus       199 ~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~-~~~~  236 (243)
                      +++++++||.|+ |++|..++..+...|+..++.+ +++.
T Consensus       248 ~~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~  287 (525)
T 3qp9_A          248 WQADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSG  287 (525)
T ss_dssp             SCTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC
T ss_pred             ecCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCC
Confidence            567899999998 9999999988888899557777 7773

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=82.51  E-value=1.4  Score=39.61  Aligned_cols=37  Identities=19%  Similarity=0.406  Sum_probs=31.7

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       203 ~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      .+|.|+|.|.+|+..+..+.. |. +|+++++++++.+.
T Consensus        37 mkIaVIGlG~mG~~lA~~La~-G~-~V~~~D~~~~~v~~   73 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ-NH-EVVALDIVQAKVDM   73 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TS-EEEEECSCHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHc-CC-eEEEEecCHHHhhH
Confidence            489999999999987777666 98 99999999988764

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=82.41  E-value=1.6  Score=35.61  Aligned_cols=47  Identities=19%  Similarity=0.259  Sum_probs=37.1

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +.....+.++.+||-+|.|. |..+..+++..+. +|++++.++..++.
T Consensus        53 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~   99 (273)
T 3bus_A           53 MIALLDVRSGDRVLDVGCGI-GKPAVRLATARDV-RVTGISISRPQVNQ   99 (273)
T ss_dssp             HHHHSCCCTTCEEEEESCTT-SHHHHHHHHHSCC-EEEEEESCHHHHHH
T ss_pred             HHHhcCCCCCCEEEEeCCCC-CHHHHHHHHhcCC-EEEEEeCCHHHHHH
Confidence            45667788999999998754 6677788887788 99999998876543

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=82.28  E-value=1.9  Score=37.56  Aligned_cols=39  Identities=18%  Similarity=0.304  Sum_probs=34.4

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       202 g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ..+|.|+|.|.+|...+..+...|. +|++.++++++.+.
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~   60 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQA   60 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHH
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHH
Confidence            4689999999999999999999998 99999999887653

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=82.22  E-value=1.7  Score=36.81  Aligned_cols=49  Identities=22%  Similarity=0.312  Sum_probs=37.3

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCchhhhcC
Q 026140          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIG  242 (243)
Q Consensus       193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g-~~~vi~~~~~~~~~~~~  242 (243)
                      +......+++++||-+|.|. |..+..+++..+ ..+|++++.+++.++.+
T Consensus        67 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a  116 (317)
T 1dl5_A           67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIA  116 (317)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHH
T ss_pred             HHHhcCCCCcCEEEEecCCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHH
Confidence            45667788999999999865 777778887654 23799999998776543

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=82.12  E-value=1.1  Score=35.73  Aligned_cols=44  Identities=30%  Similarity=0.385  Sum_probs=34.5

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC------CeEEEEcCCchhhhcC
Q 026140          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGA------TRIIGVDVISEKFEIG  242 (243)
Q Consensus       198 ~~~~g~~VlI~GaG~vG~~~v~la~~~g~------~~vi~~~~~~~~~~~~  242 (243)
                      .++++++||-+|+|. |..+..+++..+.      .+|++++.+++.++.+
T Consensus        81 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a  130 (227)
T 1r18_A           81 HLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRS  130 (227)
T ss_dssp             TCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHH
T ss_pred             hCCCCCEEEEECCCc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHH
Confidence            578899999999875 7777888887652      3899999998766543

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=82.06  E-value=1.5  Score=41.22  Aligned_cols=38  Identities=26%  Similarity=0.364  Sum_probs=32.0

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHc-CCCeEEEEcCCchhh
Q 026140          201 VGSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKF  239 (243)
Q Consensus       201 ~g~~VlI~Ga-G~vG~~~v~la~~~-g~~~vi~~~~~~~~~  239 (243)
                      .+.+|||.|+ |.+|..++..+... |. +|++++++..+.
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~-~V~~~~r~~~~~  353 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSDAI  353 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSE-EEEEEESCCTTT
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCC-EEEEEEcCchhh
Confidence            4678999998 99999998888877 78 899999887653

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=81.94  E-value=1.9  Score=40.70  Aligned_cols=34  Identities=21%  Similarity=0.349  Sum_probs=30.1

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       202 g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ..+|+|+|+|+.|+.++..+...|. +|++++.++
T Consensus       391 ~~~VvIIGgG~AGl~aA~~La~~G~-~V~liE~~~  424 (690)
T 3k30_A          391 DARVLVVGAGPSGLEAARALGVRGY-DVVLAEAGR  424 (690)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            4689999999999999998888899 899998764

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=81.89  E-value=2.1  Score=39.08  Aligned_cols=34  Identities=29%  Similarity=0.342  Sum_probs=30.3

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  234 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~  234 (243)
                      ..|.+|+|.|.|.+|..+++++..+|+ +||++.-
T Consensus       242 l~g~tVaVQG~GNVG~~aa~~L~e~Ga-kVVavsD  275 (501)
T 3mw9_A          242 FGDKTFVVQGFGNVGLHSMRYLHRFGA-KCITVGE  275 (501)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEc
Confidence            379999999999999999999999999 8887653

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=81.89  E-value=0.7  Score=37.05  Aligned_cols=45  Identities=13%  Similarity=0.259  Sum_probs=34.8

Q ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       197 ~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ....++++||-+|+| .|..+..+++.....+|++++.+++.++.+
T Consensus        50 ~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a   94 (233)
T 2gpy_A           50 LKMAAPARILEIGTA-IGYSAIRMAQALPEATIVSIERDERRYEEA   94 (233)
T ss_dssp             HHHHCCSEEEEECCT-TSHHHHHHHHHCTTCEEEEECCCHHHHHHH
T ss_pred             HhccCCCEEEEecCC-CcHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence            344678899999987 678888888887433999999998776543

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=81.47  E-value=4.7  Score=36.19  Aligned_cols=36  Identities=33%  Similarity=0.448  Sum_probs=30.7

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      --.|.+|+|.|.|.+|..+++++...|+ +|+++..+
T Consensus       232 ~l~g~~vaVqGfGnVG~~~a~~L~e~Ga-kvVavsD~  267 (440)
T 3aog_A          232 QVEGARVAIQGFGNVGNAAARAFHDHGA-RVVAVQDH  267 (440)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEECS
T ss_pred             CccCCEEEEeccCHHHHHHHHHHHHCCC-EEEEEEcC
Confidence            3468999999999999999999999999 88855433

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=81.45  E-value=1.2  Score=35.76  Aligned_cols=45  Identities=9%  Similarity=0.226  Sum_probs=35.7

Q ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       195 ~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ....++++++||-+|+|. |..+..+++..|..+|++++.+++.++
T Consensus        68 ~~~~~~~~~~VLDlGcG~-G~~~~~la~~~~~~~v~gvD~s~~~~~  112 (230)
T 1fbn_A           68 KVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMR  112 (230)
T ss_dssp             CCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHH
T ss_pred             cccCCCCCCEEEEEcccC-CHHHHHHHHHcCCcEEEEEECCHHHHH
Confidence            445577899999999876 777888888877559999999987554

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=81.31  E-value=1.6  Score=40.26  Aligned_cols=33  Identities=30%  Similarity=0.447  Sum_probs=28.9

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       203 ~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      -.|+|+|+|..|+.++..+...|+ +|+++...+
T Consensus       127 ~DVvVVGaG~aGl~aA~~la~~G~-~V~vlEk~~  159 (571)
T 1y0p_A          127 VDVVVVGSGGAGFSAAISATDSGA-KVILIEKEP  159 (571)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            358999999999999988888999 899998765

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=81.18  E-value=1.5  Score=37.01  Aligned_cols=33  Identities=27%  Similarity=0.316  Sum_probs=25.7

Q ss_pred             CEEEEECCCHHHHHHHHHH-H-HcCCCeEEEEcCCc
Q 026140          203 STVVIFGLGSIGLAVAEGA-R-LCGATRIIGVDVIS  236 (243)
Q Consensus       203 ~~VlI~GaG~vG~~~v~la-~-~~g~~~vi~~~~~~  236 (243)
                      .-|+|+|+||.|+.++..+ + ..|. +|+++.+.+
T Consensus        66 ~DV~IIGaGPAGlsAA~~la~~r~G~-~V~viEk~~  100 (326)
T 3fpz_A           66 SDVIIVGAGSSGLSAAYVIAKNRPDL-KVCIIESSV  100 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTS-CEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCC-eEEEEECCC
Confidence            3489999999999877655 3 3699 899998654

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=81.14  E-value=2.1  Score=40.79  Aligned_cols=35  Identities=23%  Similarity=0.210  Sum_probs=31.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ...+|+|+|+|+.|+.++..++..|. +|++++.++
T Consensus       388 ~~~~VvIIGgGpAGl~aA~~L~~~G~-~Vtlie~~~  422 (729)
T 1o94_A          388 NKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAE  422 (729)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            35689999999999999999999999 899998764

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=81.11  E-value=5.1  Score=33.91  Aligned_cols=41  Identities=15%  Similarity=0.022  Sum_probs=33.6

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~-g~~~vi~~~~~~~~~~  240 (243)
                      ....+|.|+|+|.+|...+..+... |..+|.+.+++.++.+
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~  174 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAE  174 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHH
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHH
Confidence            4577999999999999887776654 8778999999987754

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=81.03  E-value=2.5  Score=37.12  Aligned_cols=35  Identities=17%  Similarity=0.248  Sum_probs=30.7

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      .....|+|+|+|..|+.++..++..|. +|+++..+
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~-~V~VlE~~   76 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGH-DVTILEAN   76 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSC-EEEEECSC
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCC-cEEEEecc
Confidence            345689999999999999999998999 99999876

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=80.88  E-value=1.3  Score=41.57  Aligned_cols=33  Identities=27%  Similarity=0.290  Sum_probs=29.0

Q ss_pred             EEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCCch
Q 026140          204 TVVIFGLGSIGLAVAEGARL-CGATRIIGVDVISE  237 (243)
Q Consensus       204 ~VlI~GaG~vG~~~v~la~~-~g~~~vi~~~~~~~  237 (243)
                      .|+|+|+|+.|++++..+.. .|. +|+++++.+.
T Consensus        34 dVlIVGaGpaGL~~A~~La~~~G~-~V~viEr~~~   67 (639)
T 2dkh_A           34 DVLIVGCGPAGLTLAAQLAAFPDI-RTCIVEQKEG   67 (639)
T ss_dssp             EEEEECCSHHHHHHHHHHTTCTTS-CEEEECSSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHhCCC-CEEEEeCCCC
Confidence            59999999999999888888 899 8999987653

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=80.83  E-value=1.2  Score=38.88  Aligned_cols=37  Identities=24%  Similarity=0.257  Sum_probs=32.6

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       203 ~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      .+|.|+|+|.+|.+.+..+...|. +|...++++++.+
T Consensus        30 mkI~VIGaG~mG~alA~~La~~G~-~V~l~~r~~~~~~   66 (356)
T 3k96_A           30 HPIAILGAGSWGTALALVLARKGQ-KVRLWSYESDHVD   66 (356)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTTTC-CEEEECSCHHHHH
T ss_pred             CeEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHH
Confidence            579999999999999998888898 8999999887654

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=80.74  E-value=3.3  Score=37.04  Aligned_cols=36  Identities=25%  Similarity=0.393  Sum_probs=30.3

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      .-.|.+|+|.|.|.+|..+++++..+|+ +|+++.-+
T Consensus       218 ~l~g~~vaVqG~GnVG~~aa~~l~e~Ga-kVVavsD~  253 (424)
T 3k92_A          218 KLQNARIIIQGFGNAGSFLAKFMHDAGA-KVIGISDA  253 (424)
T ss_dssp             CGGGCEEEEECCSHHHHHHHHHHHHHTC-EEEEEECS
T ss_pred             CcccCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            3468899999999999999999999999 77655433

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=80.65  E-value=1.5  Score=40.31  Aligned_cols=32  Identities=34%  Similarity=0.527  Sum_probs=28.4

Q ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       204 ~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      .|+|+|+|..|++++..+...|+ +|+++...+
T Consensus       123 DVvVVG~G~aGl~aA~~la~~G~-~V~vlEk~~  154 (566)
T 1qo8_A          123 QVLVVGAGSAGFNASLAAKKAGA-NVILVDKAP  154 (566)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTC-CEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            58999999999999888888899 899998765

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=80.64  E-value=2  Score=39.96  Aligned_cols=34  Identities=21%  Similarity=0.176  Sum_probs=29.6

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       202 g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ...|+|+|+|+.|++++..+...|. +|+++++.+
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~G~-~V~LiEr~~   56 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKLGH-DVTIYERSA   56 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHcCCC-CEEEEcCCC
Confidence            3679999999999998888888899 999998763

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=80.62  E-value=2.3  Score=33.70  Aligned_cols=47  Identities=17%  Similarity=0.331  Sum_probs=35.9

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +.......++++||-+|.|. |..+..+++.. . +|++++.+++.++.+
T Consensus        62 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~-~-~v~~vD~~~~~~~~a  108 (231)
T 1vbf_A           62 MLDELDLHKGQKVLEIGTGI-GYYTALIAEIV-D-KVVSVEINEKMYNYA  108 (231)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHS-S-EEEEEESCHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEEcCCC-CHHHHHHHHHc-C-EEEEEeCCHHHHHHH
Confidence            44566788999999999875 77777777764 5 999999988766543

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=80.60  E-value=2.9  Score=36.04  Aligned_cols=41  Identities=20%  Similarity=0.298  Sum_probs=33.5

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCchhh
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKF  239 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~-~~vi~~~~~~~~~  239 (243)
                      .++..+|.|+|+|.+|...+..+...|. .+++.+|.++++.
T Consensus        18 ~~~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~   59 (330)
T 3ldh_A           18 PRSYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKL   59 (330)
T ss_dssp             CCCCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHH
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHH
Confidence            3467899999999999998888777764 5799999987654

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=80.53  E-value=1.6  Score=38.12  Aligned_cols=32  Identities=28%  Similarity=0.330  Sum_probs=27.3

Q ss_pred             CEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCC
Q 026140          203 STVVIFGLGSIGLAVAEGARLC--GATRIIGVDVI  235 (243)
Q Consensus       203 ~~VlI~GaG~vG~~~v~la~~~--g~~~vi~~~~~  235 (243)
                      -.|+|+|+|.+|++++..+...  |. +|+++++.
T Consensus        37 ~dVvIIGaGi~Gls~A~~La~~~pG~-~V~vlE~~   70 (405)
T 3c4n_A           37 FDIVVIGAGRMGAACAFYLRQLAPGR-SLLLVEEG   70 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTS-CEEEECSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCC-eEEEEeCC
Confidence            3599999999999988877777  99 89999865

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=80.37  E-value=2.5  Score=36.64  Aligned_cols=36  Identities=25%  Similarity=0.383  Sum_probs=31.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ...+|+|+|+|++|..++..+...|.+++..+|...
T Consensus        35 ~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~   70 (346)
T 1y8q_A           35 RASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQ   70 (346)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence            457999999999999999999999999999998653

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=80.37  E-value=1.6  Score=40.55  Aligned_cols=32  Identities=31%  Similarity=0.417  Sum_probs=27.4

Q ss_pred             EEEEECCCHHHHHHHHHHHHc------CCCeEEEEcCCc
Q 026140          204 TVVIFGLGSIGLAVAEGARLC------GATRIIGVDVIS  236 (243)
Q Consensus       204 ~VlI~GaG~vG~~~v~la~~~------g~~~vi~~~~~~  236 (243)
                      .|+|+|+|+.|++++..++..      |. +|+++.+.+
T Consensus        37 DVvIVGaG~aGlaaA~~La~~~~~~~~G~-~V~vlEk~~   74 (584)
T 2gmh_A           37 DVVIVGAGPAGLSAATRLKQLAAQHEKDL-RVCLVEKAA   74 (584)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCC-CEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCC-cEEEEeCCC
Confidence            489999999999888777777      99 899998764

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=80.35  E-value=2.5  Score=38.76  Aligned_cols=34  Identities=21%  Similarity=0.129  Sum_probs=28.2

Q ss_pred             CCEEEEECCCHHHHHHHHHHHH---cCCCeEEEEcCCc
Q 026140          202 GSTVVIFGLGSIGLAVAEGARL---CGATRIIGVDVIS  236 (243)
Q Consensus       202 g~~VlI~GaG~vG~~~v~la~~---~g~~~vi~~~~~~  236 (243)
                      -..|+|+|+|+.|++++..+..   .|. +|+++++.+
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~-~V~liE~~~   61 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTA-DITLLQAPD   61 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSS-EEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCC-cEEEEeCCC
Confidence            4579999999999887777766   789 999998753

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=80.33  E-value=1.9  Score=37.19  Aligned_cols=33  Identities=24%  Similarity=0.166  Sum_probs=27.7

Q ss_pred             CEEEEECCCHHHHHHHHHHHH-cC-CCeEEEEcCCc
Q 026140          203 STVVIFGLGSIGLAVAEGARL-CG-ATRIIGVDVIS  236 (243)
Q Consensus       203 ~~VlI~GaG~vG~~~v~la~~-~g-~~~vi~~~~~~  236 (243)
                      -.|+|+|+|..|++++..+.. .| . +|+++++.+
T Consensus        22 ~dVvIIG~G~~Gl~~A~~La~~~G~~-~V~vlE~~~   56 (405)
T 2gag_B           22 YDAIIVGGGGHGLATAYFLAKNHGIT-NVAVLEKGW   56 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCC-CEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHhcCCC-cEEEEeCCC
Confidence            469999999999988777777 89 8 899998764

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=80.29  E-value=2.8  Score=37.64  Aligned_cols=37  Identities=24%  Similarity=0.275  Sum_probs=32.2

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ..|++|+|+|+|.+|+-++..+...|+.+|..+.+.+
T Consensus       262 ~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~  298 (456)
T 2vdc_G          262 AAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRD  298 (456)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCC
Confidence            5789999999999999999888889986698887764

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=80.19  E-value=1.7  Score=39.20  Aligned_cols=40  Identities=33%  Similarity=0.497  Sum_probs=34.3

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       202 g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      =.+|.|+|.|-+|+-.+......|. +|+++|.+++|.+.+
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~G~-~V~g~Did~~kV~~l   60 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALLGH-RVVGYDVNPSIVERL   60 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHH
Confidence            3589999999999987777777899 999999999987653

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=80.09  E-value=1.5  Score=33.89  Aligned_cols=46  Identities=30%  Similarity=0.312  Sum_probs=34.6

Q ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCchhhhcC
Q 026140          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIG  242 (243)
Q Consensus       196 ~~~~~~g~~VlI~GaG~vG~~~v~la~~~g-~~~vi~~~~~~~~~~~~  242 (243)
                      ...++++++||-+|.|. |..+..+++..+ ..+|++++.+++.++.+
T Consensus        17 ~~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a   63 (197)
T 3eey_A           17 KMFVKEGDTVVDATCGN-GNDTAFLASLVGENGRVFGFDIQDKAIANT   63 (197)
T ss_dssp             HHHCCTTCEEEESCCTT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHH
T ss_pred             HhcCCCCCEEEEcCCCC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHH
Confidence            34568899999998765 677778888764 23899999998766543

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=80.01  E-value=1.9  Score=41.66  Aligned_cols=38  Identities=24%  Similarity=0.288  Sum_probs=32.3

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHH-HcCCCeEEEEcCCc
Q 026140          199 VEVGSTVVIFGL-GSIGLAVAEGAR-LCGATRIIGVDVIS  236 (243)
Q Consensus       199 ~~~g~~VlI~Ga-G~vG~~~v~la~-~~g~~~vi~~~~~~  236 (243)
                      +.+++++||.|+ |++|.++++.+. ..|+++++.++++.
T Consensus       527 ~~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~  566 (795)
T 3slk_A          527 WDAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRG  566 (795)
T ss_dssp             CCTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSG
T ss_pred             cccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCc
Confidence            357899999998 999999888776 79997799999884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	243
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	3e-41
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	2e-36
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	3e-36
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	2e-32
d2jhfa1	198	b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase	1e-31
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	2e-21
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	8e-19
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	1e-18
d1uufa1	179	b.35.1.2 (A:3-144,A:313-349) Hypothetical protein	2e-18
d1vj0a1	184	b.35.1.2 (A:2-155,A:338-367) Hypothetical protein	2e-17
d1pl8a1	185	b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor	2e-16
d1d1ta2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	2e-15
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	5e-14
d1jvba1	177	b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase	7e-14
d1p0fa2	174	c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog	8e-14
d1e3ia2	174	c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (	5e-13
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	3e-12
d1jqba1	177	b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secon	3e-12
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	2e-11
d1rjwa1	171	b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase	3e-11
d1h2ba1	171	b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenas	4e-11
d1f8fa2	174	c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {	7e-10
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	2e-08
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	2e-08
d1iz0a1	131	b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase	2e-05
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	2e-05
d1kola2	195	c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps	4e-05
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	5e-04
d1gu7a1	175	b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA redu	0.003

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score =  137 bits (346), Expect = 3e-41
 Identities = 70/199 (35%), Positives = 109/199 (54%), Gaps = 1/199 (0%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T GK I+C+AA+A    +PLVI+E+ VD P+++E+R++II T +CH+D+           
Sbjct: 2   TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDG 61

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP +LGHE  G+VESVG  V     G+ VIP F++ C EC  C+S K N C       SP
Sbjct: 62  FPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESP 121

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +   + +RF   +G  +  F+  S+FS+YTV++   V K+DP+V  +        + + 
Sbjct: 122 DVMSPKETRF-TCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESV 180

Query: 190 VGAAWRTANVEVGSTVVIF 208
             A     + +   TV+  
Sbjct: 181 NDAIDLMKHGKCIRTVLSL 199

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score =  125 bits (315), Expect = 2e-36
 Identities = 73/208 (35%), Positives = 108/208 (51%), Gaps = 12/208 (5%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I C+AA+A  P +PL ++ + V PP +HEVR++I+ + +C SD +    +  P+ 
Sbjct: 2   TAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVL-KEIIPSK 60

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP ILGHEA+GVVES+G  V  V  GD VIP F+  C  C  C+S   N C         
Sbjct: 61  FPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKT 120

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +  D TSRF   RG+ I++ +  S+F+EYTV+    V K+DP +  N        +   
Sbjct: 121 GLMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKINVNFLVSTKLTL--- 176

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAV 217
                    +     ++  G G   + +
Sbjct: 177 -------DQINKAFELLSSGQGVRSIMI 197

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score =  124 bits (313), Expect = 3e-36
 Identities = 76/197 (38%), Positives = 107/197 (54%), Gaps = 1/197 (0%)

Query: 11  AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF 70
           A + I+C+AA+A   G+PL I+E+ V PP +HEVR++II T++CH+D       D    F
Sbjct: 1   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCF 60

Query: 71  PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           P ILGH   G+VESVGE V  +  GD VIP ++  C EC  C + K NLC          
Sbjct: 61  PVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 120

Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
           +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP +  +     +       
Sbjct: 121 LMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEIN 179

Query: 191 GAAWRTANVEVGSTVVI 207
            A     + +   TVV 
Sbjct: 180 KAFELMHSGKSIRTVVK 196

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score =  115 bits (288), Expect = 2e-32
 Identities = 69/201 (34%), Positives = 102/201 (50%), Gaps = 7/201 (3%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T GK I+C+AAIA   G PL I+E+ V PP + EVR+++I T +C +D+         A+
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINAT-DPKKKAL 60

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC---SAFPFK 126
           FP +LGHE  G+VESVG  V     GD VIP F   C  C  C S   NLC     F + 
Sbjct: 61  FPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYP 120

Query: 127 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
                  +  +     +G +I+HF+ VSSFS+YTV+  A++ +VD     +     +   
Sbjct: 121 TIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLVTHALPF 180

Query: 187 STGVGAAWRTANVEVGSTVVI 207
            +   A      ++ G ++  
Sbjct: 181 ESINDAI---DLMKEGKSIRT 198

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score =  113 bits (282), Expect = 1e-31
 Identities = 73/200 (36%), Positives = 100/200 (50%), Gaps = 5/200 (2%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSG-TLVTP 60

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA G+VES+GE V  V  GD VIP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D          L   V   
Sbjct: 121 GTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAFA---LDPLITHVLPF 176

Query: 190 VGAAWRTANVEVGSTVVIFG 209
                    +  G ++    
Sbjct: 177 EKINEGFDLLRSGESIRTIL 196

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 86.5 bits (213), Expect = 2e-21
 Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 3/191 (1%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
            AA+    G    +  + +  P   EV V+++ T +CH+D+     K      P +LGHE
Sbjct: 5   IAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPV-PLPAVLGHE 63

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
             G++E++G NV  +  GD V+  +   C +C  C +     CS F  +       +   
Sbjct: 64  GSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNH 122

Query: 138 RF-KDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT 196
                 +G    HF + SSF+ Y +    + VKV    P ++             A    
Sbjct: 123 ALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQLVKFYAFDEINQAAIDSR 182

Query: 197 ANVEVGSTVVI 207
             + +   + I
Sbjct: 183 KGITLKPIIKI 193

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.1 bits (194), Expect = 8e-19
 Identities = 35/200 (17%), Positives = 67/200 (33%), Gaps = 20/200 (10%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPP--NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFP 71
           P +       +  +     +   DP     H++ ++I    +C SD+            P
Sbjct: 4   PEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMP 63

Query: 72  RILGHEAIGVVESVG-ENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            ++GHE +G V  +G ++  G+  G  V +   +  C EC  C++     C+ F    S 
Sbjct: 64  LVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQ 123

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                               +VS   ++ Y  +    VV +   +      +   GV   
Sbjct: 124 PYE---------------DGYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEA 168

Query: 190 VGAAWRTANVEVGSTVVIFG 209
                   +V    T+V + 
Sbjct: 169 F-ERMEKGDVRYRFTLVGYD 187

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 78.4 bits (192), Expect = 1e-18
 Identities = 49/196 (25%), Positives = 71/196 (36%), Gaps = 26/196 (13%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFPAVFPR 72
           P   +AA+  A G PL I+EV V  P   +V V+I  + +CH+D+   +         P 
Sbjct: 3   PQTMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPF 62

Query: 73  ILGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
           I GHE +G V +VG  V  V EGD V IP     C  C  C +    LC +         
Sbjct: 63  IPGHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYSVN 122

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG 191
                                     EY + D  +V  +   V           ++  + 
Sbjct: 123 GGYA----------------------EYVLADPNYVGILPKNVKATIHPGKLDDINQILD 160

Query: 192 AAWRTANVEVGSTVVI 207
              R   +E G  V+ 
Sbjct: 161 QM-RAGQIE-GRIVLE 174

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 78.1 bits (191), Expect = 2e-18
 Identities = 37/191 (19%), Positives = 72/191 (37%), Gaps = 16/191 (8%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +A  A +  +PL   ++    P  ++V++ I    +CHSD+   + +    V+P + GHE
Sbjct: 2   KAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHE 61

Query: 78  AIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
            +G V +VG+ V+    GD V +   +  C  C  C     N C       +   P +  
Sbjct: 62  IVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPG 121

Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP-NRACLLSCGVSTGVGAAWR 195
                              +S+  V+   +V+++        RA  ++      +    +
Sbjct: 122 HTLG--------------GYSQQIVVHERYVLRIRVADIEMIRADQINEAYERMLRGDVK 167

Query: 196 TANVEVGSTVV 206
              V    T+ 
Sbjct: 168 YRFVIDNRTLT 178

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 75.6 bits (185), Expect = 2e-17
 Identities = 42/202 (20%), Positives = 69/202 (34%), Gaps = 28/202 (13%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRI 73
            ++  A +     +PLV  E  +       + V I+   +C SDV  ++ +D     P I
Sbjct: 2   GLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPII 61

Query: 74  LGHEAIGVVESVGENVDGVVEGD-----VVIPHFLADCTECVGCRS-KKGNLCSAFPFKI 127
           LGHE  G V  V      +         +++ +    C EC  C+  K+  LC       
Sbjct: 62  LGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV-- 119

Query: 128 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH-VVKVDPTVPPNRACLLSCGV 186
             +      S +  LRG           +S + VLD    V+KV   +       L    
Sbjct: 120 --YGINRGCSEYPHLRG----------CYSSHIVLDPETDVLKVSEKITHRLP--LKEAN 165

Query: 187 STGVGAAWRTANVEVGSTVVIF 208
                 A           V+++
Sbjct: 166 -----KALELMESREALKVILY 182

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.0 bits (178), Expect = 2e-16
 Identities = 44/201 (21%), Positives = 74/201 (36%), Gaps = 29/201 (14%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK---DF 66
            A KP    + +   PG+ L ++   +  P  +EV +R+    +C SDV +W+     +F
Sbjct: 2   AAAKP-NNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNF 59

Query: 67  PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
               P +LGHEA G VE VG +V  +  GD V     A       C+  + NL  +  F 
Sbjct: 60  IVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFC 119

Query: 127 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
            +P                         +   +   + A   K+   V P          
Sbjct: 120 ATPPDDG---------------------NLCRFYKHNAAFCYKLPDNVKPLVTHRFPLEK 158

Query: 187 STGVGAAWRTANVEVGSTVVI 207
           +     A+ T    +G  +++
Sbjct: 159 AL---EAFETFKKGLGLKIML 176

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 69.9 bits (170), Expect = 2e-15
 Identities = 36/67 (53%), Positives = 48/67 (71%)

Query: 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 233
            PP + CL+ CG STG GAA +T  V+ GST V+FGLG +GL+V  G +  GA+RIIG+D
Sbjct: 2   APPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGID 61

Query: 234 VISEKFE 240
           +  +KFE
Sbjct: 62  LNKDKFE 68

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 66.2 bits (160), Expect = 5e-14
 Identities = 42/194 (21%), Positives = 74/194 (38%), Gaps = 26/194 (13%)

Query: 19  AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRILG 75
           +A+     + L +++  +  P   EV +++    +C SDV +++   + DF    P ++G
Sbjct: 4   SAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIG 62

Query: 76  HEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
           HEA G V  VG+NV  + +GD V       C  C  C+  K NLC    F  +P      
Sbjct: 63  HEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDD--- 119

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
                              + + Y V       K+       +    S  +   V  A+ 
Sbjct: 120 ------------------GNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVD-AFE 160

Query: 196 TANVEVGSTVVIFG 209
            A  +  +T+ +  
Sbjct: 161 AARKKADNTIKVMI 174

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 65.7 bits (159), Expect = 7e-14
 Identities = 41/198 (20%), Positives = 70/198 (35%), Gaps = 31/198 (15%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK--------MKDFPAV 69
           RA      G+PL + E+ V  P   +V +++    +CHSDV   +        ++D    
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P  LGHE  G +E VG+ V G  +GD+V  +       C  CR  + +LC +       
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSP------ 115

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                                    +++EY ++     +     V P     +    +  
Sbjct: 116 ----------------RWLGINFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANE 159

Query: 190 VGAAWRTANVEVGSTVVI 207
                      +G  V+I
Sbjct: 160 AIDNLENFKA-IGRQVLI 176

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 65.3 bits (158), Expect = 8e-14
 Identities = 31/68 (45%), Positives = 40/68 (58%)

Query: 176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235
           P  +CL+ CG +TG GAA  TA V  GST  +FGLG +G +   G +  GA+RIIGV   
Sbjct: 2   PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTH 61

Query: 236 SEKFEIGE 243
            +KF    
Sbjct: 62  KDKFPKAI 69

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 63.0 bits (152), Expect = 5e-13
 Identities = 32/65 (49%), Positives = 42/65 (64%)

Query: 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 234
              R CL+ CG S+G GAA  TA V  GST  +FGLG +GL+   G ++ GA+RII +D+
Sbjct: 2   NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDI 61

Query: 235 ISEKF 239
             EKF
Sbjct: 62  NGEKF 66

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 61.8 bits (149), Expect = 3e-12
 Identities = 38/217 (17%), Positives = 69/217 (31%), Gaps = 26/217 (11%)

Query: 18  RAAIATAPGEPLVID------EVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFP 71
           R  +    G+  V        +        H V ++++ T++C SD    +     A   
Sbjct: 3   RGVVYLGSGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRG-RTTAQVG 61

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
            +LGHE  G V   G +V+ +  GD+V   F   C  C  C+     +C       +   
Sbjct: 62  LVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGA 121

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTG 189
                          +         +EY ++  A  +++K+           ++  V   
Sbjct: 122 YG------------YVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGVQ 169

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA 226
           V +    A    G     F  G     V +  +   A
Sbjct: 170 VISLDD-APRGYG----EFDAGVPKKFVIDPHKTFSA 201

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 61.1 bits (147), Expect = 3e-12
 Identities = 35/203 (17%), Positives = 58/203 (28%), Gaps = 33/203 (16%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +        + L   E       S++  VR +  S C SD+              ILGHE
Sbjct: 2   KGFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHE 60

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
           A+G V  VG  V     GD VI          +  ++      +           +D   
Sbjct: 61  AVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGV- 119

Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
                             F EY  ++ A  ++      +P +    LS  V+        
Sbjct: 120 ------------------FGEYFHVNDADMNLAI----LPKDVD--LSKLVTHVYHGFDH 155

Query: 196 TANVEVGSTVVIFGLGSIGLAVA 218
                +   +++       L  A
Sbjct: 156 -----IEEALLLMKDKPKDLIKA 173

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 58.8 bits (141), Expect = 2e-11
 Identities = 33/69 (47%), Positives = 44/69 (63%)

Query: 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 234
           P  + CL+ CG STG G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+
Sbjct: 2   PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDI 61

Query: 235 ISEKFEIGE 243
             +KF   +
Sbjct: 62  NKDKFAKAK 70

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 58.1 bits (139), Expect = 3e-11
 Identities = 46/194 (23%), Positives = 64/194 (32%), Gaps = 28/194 (14%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFPAVFPRILGH 76
           +AA+     EPL I EV     +  EV VRI    +CH+D+             P I GH
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61

Query: 77  EAIGVVESVGENVDGV-VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
           E +G+VE VG  V  + V   V IP   + C  C  C S +  LC               
Sbjct: 62  EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKN---------- 111

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
                         +     ++EY      +VVK+          L        V     
Sbjct: 112 ------------AGYSVDGGYAEYCRAAADYVVKIPDNTIIEVQPLEKINE---VFDRML 156

Query: 196 TANVEVGSTVVIFG 209
              +  G  V+   
Sbjct: 157 KGQIN-GRVVLTLE 169

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 57.8 bits (138), Expect = 4e-11
 Identities = 37/194 (19%), Positives = 66/194 (34%), Gaps = 28/194 (14%)

Query: 18  RAAIATAPGEPLVIDEV-IVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGH 76
           +AA      +PL I++V         +V VRI    +CH+D+   +      + P++   
Sbjct: 1   KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYT 60

Query: 77  EAIGVVESV---GENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR 133
                V  +    E V+G+ +GD VI H       C+ CR+ +   C    F        
Sbjct: 61  LGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDG- 119

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAA 193
                                 F+E+       V+K+   V           ++  +   
Sbjct: 120 ---------------------GFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERL 158

Query: 194 WRTANVEVGSTVVI 207
            +   V +G  V+I
Sbjct: 159 EK-GEV-LGRAVLI 170

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 54.1 bits (129), Expect = 7e-10
 Identities = 25/70 (35%), Positives = 39/70 (55%)

Query: 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 233
           VP      L CG+ TG GA      V   S+ V +G G++GL+    A++CGA+ II VD
Sbjct: 1   VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVD 60

Query: 234 VISEKFEIGE 243
           ++  + E+ +
Sbjct: 61  IVESRLELAK 70

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 50.0 bits (118), Expect = 2e-08
 Identities = 38/69 (55%), Positives = 45/69 (65%)

Query: 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 234
           P +  CLL CGVSTG GAA  TA VE GST  +FGLG++GLA   G    GA RII VD+
Sbjct: 2   PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDL 61

Query: 235 ISEKFEIGE 243
             +KFE  +
Sbjct: 62  NPDKFEKAK 70

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 2e-08
 Identities = 36/69 (52%), Positives = 48/69 (69%)

Query: 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 234
           P ++ CLL CG+STG GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+
Sbjct: 2   PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDI 61

Query: 235 ISEKFEIGE 243
             +KF   +
Sbjct: 62  NKDKFARAK 70

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 131

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 41.3 bits (96), Expect = 2e-05
 Identities = 10/59 (16%), Positives = 20/59 (33%)

Query: 18 RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGH 76
          +A +    G PL + ++        EV +R+    L  +D           + P  +  
Sbjct: 2  KAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPG 60

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216
           +P   A +++  ++TG   A   A++E+GS+VV+ G+G++GL 
Sbjct: 1   MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLM 42

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 41.0 bits (95), Expect = 4e-05
 Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLC 224
              LS  + TG   A   A V  GSTV + G G +GLA A  ARL 
Sbjct: 4   LTCLSDILPTGYHGAVT-AGVGPGSTVYVAGAGPVGLAAAASARLL 48

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.6 bits (86), Expect = 5e-04
 Identities = 11/36 (30%), Positives = 14/36 (38%)

Query: 179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIG 214
             +  C  +T   A         G TVVI G G +G
Sbjct: 6   LAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLG 41

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 35.1 bits (79), Expect = 0.003
 Identities = 20/206 (9%), Positives = 41/206 (19%), Gaps = 44/206 (21%)

Query: 15  IQCRAAIATAPGEP-----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           I  +A + T  GEP         E+  D    +EV V+ + + +  SD+   +       
Sbjct: 2   ITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKP 61

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
                                    G         +       +             + P
Sbjct: 62  AKTTGF-------------------GTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIP 102

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                                           L         P    ++A     G++  
Sbjct: 103 SHVNFG--------------------TWRTHALGNDDDFIKLPNPAQSKANGKPNGLTDA 142

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGL 215
                     +    +   G+ +   
Sbjct: 143 KSIETLYDGTKPLHELYQDGVANSKD 168

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	243
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	100.0
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	100.0
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	100.0
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	100.0
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	100.0
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	100.0
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	100.0
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	100.0
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	100.0
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	100.0
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	100.0
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	100.0
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	100.0
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	100.0
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	100.0
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	100.0
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	99.97
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.97
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.95
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.95
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.94
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	99.92
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.92
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.91
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.7
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	99.68
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.39
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.39
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.39
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.38
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.36
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.35
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.34
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.34
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.3
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.29
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.28
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.28
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.26
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.25
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.24
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.24
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.22
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.19
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.19
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.17
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.15
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.12
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.11
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.11
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.08
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.03
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.03
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	98.85
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	98.68
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.6
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.58
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.58
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.54
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.3
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.13
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.8
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	95.68
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	95.48
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.33
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	95.28
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.23
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.22
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.2
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.9
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	94.73
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	94.64
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.57
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	94.49
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.45
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.41
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	94.34
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.27
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	94.24
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.12
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	94.05
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.01
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	93.76
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	93.65
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.54
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	93.44
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	93.39
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	93.37
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	93.13
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	92.98
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	92.94
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	92.57
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	92.56
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	92.54
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	92.24
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	92.02
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	90.62
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	90.37
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	89.54
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	89.39
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	89.37
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	89.02
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	88.88
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	88.8
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	88.56
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	88.26
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	87.73
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	87.42
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	87.05
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	86.98
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	86.85
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	86.84
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	86.42
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	85.8
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	85.72
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	85.63
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	85.59
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	85.58
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	85.38
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	85.29
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	84.92
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	84.29
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	83.72
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	83.6
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	83.26
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	83.2
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	82.92
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	82.03
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	81.19
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	80.92
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	80.54

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=100.00  E-value=1.2e-39  Score=266.76  Aligned_cols=198  Identities=35%  Similarity=0.561  Sum_probs=178.8

Q ss_pred             CCCCCceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCC
Q 026140           10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (243)
Q Consensus        10 ~~~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v   89 (243)
                      |-+++|++||+++.+++++++++|++.|.|+++||||||.+++||++|++++.+......+|.++|||++|+|+++|+++
T Consensus         2 ~~~~~~~~kAav~~~~~~pl~i~ev~~P~p~~~eVlIkv~a~giCgsD~~~~~g~~~~~~~p~i~GhE~~G~v~~vG~~v   81 (199)
T d1cdoa1           2 TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLGHEGAGIVESVGPGV   81 (199)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCTTSCSEECCCCEEEEEEEECTTC
T ss_pred             CCCCceEEEEEEEecCCCCcEEEEEECCCCCCCEEEEEEEEEEEecchhhhhhhcccccccccccccccceEEEEEcCCC
Confidence            34678999999999999999999999999999999999999999999999999977667899999999999999999999


Q ss_pred             CccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEE
Q 026140           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (243)
Q Consensus        90 ~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~  169 (243)
                      .+|++||+|++.+..+|+.|.+|+.+.+++|+..+.....+...++..++. .+|....++.+.|+|+||++++.+++++
T Consensus        82 ~~~~~GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~Ggfaey~~v~~~~~~~  160 (199)
T d1cdoa1          82 TEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFT-CKGRKVLQFLGTSTFSQYTVVNQIAVAK  160 (199)
T ss_dssp             CSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEE-ETTEEEEEGGGTCCSBSEEEEEGGGEEE
T ss_pred             ceecCCCEEEEeeeccccccccccCCCcccccccccccccccccCccccee-eccceeecccccCCceEEEEEchHHEEE
Confidence            999999999999999999999999999999999887766666666644433 4555666666678999999999999999


Q ss_pred             cCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEE
Q 026140          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  208 (243)
Q Consensus       170 ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~  208 (243)
                      +|+++++++++++.+++.|++.++......+.|++|||+
T Consensus       161 iP~~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~  199 (199)
T d1cdoa1         161 IDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  199 (199)
T ss_dssp             CCTTSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence            999999999999999999999998888888999999984

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=100.00  E-value=3.4e-38  Score=257.65  Aligned_cols=196  Identities=38%  Similarity=0.595  Sum_probs=171.1

Q ss_pred             CCCceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCc
Q 026140           12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG   91 (243)
Q Consensus        12 ~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~   91 (243)
                      +..|+|||+++.+++++|+++|+|.|+|+++||||||++++||++|+++++|.+....+|.++|||++|+|+++|++++.
T Consensus         2 ~~~~~~kAav~~~~g~~l~i~evp~P~p~~~eVLVkv~a~gic~sD~~~~~G~~~~~~~p~v~GhE~~G~V~~vG~~V~~   81 (197)
T d2fzwa1           2 NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVTK   81 (197)
T ss_dssp             CCCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             CCceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEecCCCCcHHHHcCCcccccccccCCcceeeEEEeecCCcee
Confidence            45689999999999999999999999999999999999999999999999998777789999999999999999999999


Q ss_pred             cCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcC
Q 026140           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (243)
Q Consensus        92 ~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip  171 (243)
                      +++||+|++.+..+|+.|.+|+.+.+.+|++.......+...+...++. .+|....++.+.|+|+||++++..+++++|
T Consensus        82 ~~~GdrV~v~~~~~cg~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~-~~g~~v~~~~g~GgfAey~vvp~~~~~~vp  160 (197)
T d2fzwa1          82 LKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKID  160 (197)
T ss_dssp             CCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEE-ETTEEEBCCTTTCCSBSEEEEEGGGEEECC
T ss_pred             cCCCCEEEEccccccccccccccCccccCccccccccccccCCccceec-cCCcceecccccccceeEEEechHHEEECC
Confidence            9999999999999999999999999999998654433444444433322 456667777778999999999999999999


Q ss_pred             CCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEE
Q 026140          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  208 (243)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~  208 (243)
                      +++++++++.+.+.+.|++.++......+.+++|||+
T Consensus       161 ~~l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi  197 (197)
T d2fzwa1         161 PLIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  197 (197)
T ss_dssp             TTSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             CCCCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence            9999999999999999999976555555788899884

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=100.00  E-value=2e-37  Score=252.44  Aligned_cols=191  Identities=25%  Similarity=0.426  Sum_probs=162.2

Q ss_pred             ceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCC
Q 026140           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (243)
Q Consensus        15 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~   94 (243)
                      ++|+|+++.+.+++|++++++.|+|++||||||+.+++||++|+++++|.++. .+|.++|||++|+|+++|+++++|++
T Consensus         2 k~~~Aav~~~~g~~l~l~~v~~P~p~~geVlVkv~a~gic~sD~~~~~G~~~~-~~P~i~GHE~~G~V~~vG~~v~~~~v   80 (194)
T d1f8fa1           2 KDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPV-PLPAVLGHEGSGIIEAIGPNVTELQV   80 (194)
T ss_dssp             EEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC-CSSBCCCCEEEEEEEEECTTCCSCCT
T ss_pred             ceeEEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEEecCchHhhhhhcccc-cCCcccccceEEEeeecCccceeEcc
Confidence            57999999999999999999999999999999999999999999999988764 68999999999999999999999999


Q ss_pred             CCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccc-cCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKD-LRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (243)
Q Consensus        95 Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~-~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~  173 (243)
                      ||+|+.. ..+|++|.+|+.+.+++|++.....+.|...+|..++.. ..+....|+.+.|+|+||.+++..+++++|++
T Consensus        81 GDrVv~~-~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~dg~~~~~~~~~~~~~~~~~~~g~fae~~~v~~~~~~~ip~~  159 (194)
T d1f8fa1          81 GDHVVLS-YGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKD  159 (194)
T ss_dssp             TCEEEEC-CCCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEECTT
T ss_pred             Cceeeee-cccccCChhhhCCCcccccccccceeccccccceeeeecCCceeeccccccccccceeEEEehHHEEECCCC
Confidence            9999554 558999999999999999987555566766666444333 33455566777789999999999999999999


Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  232 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~  232 (243)
                      ++++++                         +++.|+|++|++++|+++.+|+.+|+++
T Consensus       160 i~~~~~-------------------------~~i~g~g~~g~~aiq~a~~~g~~~iiaV  193 (194)
T d1f8fa1         160 FPFDQL-------------------------VKFYAFDEINQAAIDSRKGITLKPIIKI  193 (194)
T ss_dssp             CCGGGG-------------------------EEEEEGGGHHHHHHHHHHTSCSEEEEEC
T ss_pred             CCcccE-------------------------EEEeCcHHHHHHHHHHHHHcCCCEEEEe
Confidence            887654                         3456779999999999999999666664

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=100.00  E-value=3e-37  Score=252.86  Aligned_cols=195  Identities=38%  Similarity=0.609  Sum_probs=166.7

Q ss_pred             CCCCCceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCC
Q 026140           10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (243)
Q Consensus        10 ~~~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v   89 (243)
                      |.+.+|+|||+++.+++++++++|++.|.|+++||||||++++||++|+++++|.++. .+|.++|||++|+|+++|+++
T Consensus         2 ~~~~~~~~KAaV~~~~g~pl~i~evp~P~p~~geVlVkv~a~gic~sD~~~~~G~~~~-~~P~v~GHE~~G~V~~vG~~V   80 (202)
T d1e3ia1           2 TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKA-LFPVVLGHECAGIVESVGPGV   80 (202)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTTSCC-CSSBCCCCEEEEEEEEECTTC
T ss_pred             CCCCeEEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEeccccceeeeeccc-ccccccccccceEEeeecCCc
Confidence            5678899999999999999999999999999999999999999999999999987654 689999999999999999999


Q ss_pred             CccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCC----CCCCCCccccccCCceeecccccceeeeeEEeccC
Q 026140           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW----MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA  165 (243)
Q Consensus        90 ~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g----~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~  165 (243)
                      ++|++||+|++.+...|+.|.+|+.+.+++|+......+..    ...++..++ ..+|...+++.+.|+|+||+++++.
T Consensus        81 ~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~v~~~~~~G~faey~~v~~~  159 (202)
T d1e3ia1          81 TNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRF-TCKGRSIYHFMGVSSFSQYTVVSEA  159 (202)
T ss_dssp             CSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSE-EETTEEEBCCTTTCCSBSEEEEEGG
T ss_pred             eeccCCCEEEEEeeccccccccccCCcccccccccccccCccceeccccccccc-ccCceeeecccccCCceEEEEEehh
Confidence            99999999999999999999999999999999876532111    111222222 2456677777788999999999999


Q ss_pred             cEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEEC
Q 026140          166 HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG  209 (243)
Q Consensus       166 ~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~G  209 (243)
                      +++++|++++++.++.+.+.+.+.+.++ +.  +++|++|.|+.
T Consensus       160 ~l~~lP~~~~~~~~~~~~~~~~~~~~a~-~~--~k~G~~V~vi~  200 (202)
T d1e3ia1         160 NLARVDDEFDLDLLVTHALPFESINDAI-DL--MKEGKSIRTIL  200 (202)
T ss_dssp             GEEECCTTSCGGGGEEEEEEGGGHHHHH-HH--HHTTCCSEEEE
T ss_pred             hEEECCCCCCHHHHHHHHHHHHHHHHHH-Hh--CCCCCEEEEEE
Confidence            9999999999999888888888888764 33  47899998863

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=100.00  E-value=2e-36  Score=247.29  Aligned_cols=194  Identities=38%  Similarity=0.625  Sum_probs=164.3

Q ss_pred             CCCCCceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCC
Q 026140           10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (243)
Q Consensus        10 ~~~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v   89 (243)
                      +..+.++|||+++.+++++|+++|++.|+|+++||||||.+++||++|+++++|.++. .+|.++|||++|+|+++|+++
T Consensus         2 ~~~~~~~~KAav~~~~g~~l~i~ev~~P~p~~~eVlVkv~a~gICgsDlh~~~G~~~~-~~P~i~GHE~~G~Vv~~G~~v   80 (198)
T d1p0fa1           2 TAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPS-KFPVILGHEAVGVVESIGAGV   80 (198)
T ss_dssp             CTTSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC-CSSBCCCCCEEEEEEEECTTC
T ss_pred             CCCCceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEecccceeeeecccc-ccccccceeeeeeeeecCccc
Confidence            3456789999999999988999999999999999999999999999999999988764 789999999999999999999


Q ss_pred             CccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEE
Q 026140           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (243)
Q Consensus        90 ~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~  169 (243)
                      .+|++||+|++.+..+|+.|.+|+.+.+++|+........+...++..++. +++...+.+.+.|+|+||+.++..++++
T Consensus        81 ~~~~~GdrV~~~~~~~Cg~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~g~faey~~v~~~~~~k  159 (198)
T d1p0fa1          81 TCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAVAK  159 (198)
T ss_dssp             CSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEE-ETTEEEBCSTTTCCSBSEEEEETTSEEE
T ss_pred             ccCcCCCEEEEEeeccccccccccccccccchhhhccccccccCCCceeEe-eCCeeccccCCCccceeeEEecHHHEEE
Confidence            999999999999999999999999999999998887655666555544433 4566666666678999999999999999


Q ss_pred             cCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHH
Q 026140          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGL  215 (243)
Q Consensus       170 ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~  215 (243)
                      +|++++.+.++...+.+.+..          ++++|||.|+|++|+
T Consensus       160 ip~~~~~~~~~~~~~~~~~v~----------~~~~vlv~G~G~iGl  195 (198)
T d1p0fa1         160 IDPKINVNFLVSTKLTLDQIN----------KAFELLSSGQGVRSI  195 (198)
T ss_dssp             ECTTSCGGGGEEEEECGGGHH----------HHHHHTTTSSCSEEE
T ss_pred             CCCCCCHHHHHHhhcchhhcC----------CCCEEEEECCCcceE
Confidence            999999887776665544433          333477778777764

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=100.00  E-value=3.3e-35  Score=239.88  Aligned_cols=194  Identities=36%  Similarity=0.582  Sum_probs=163.7

Q ss_pred             CCCCCceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCC
Q 026140           10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (243)
Q Consensus        10 ~~~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v   89 (243)
                      +..++++|||+++.+++++++++|++.|+|+++||||||.+++||++|+++++|.++. .+|.++|||++|+|+++|+++
T Consensus         2 ~~~~~~k~KAavl~~~~~~l~i~ev~~P~p~~~eVlVkV~a~giC~sDl~~~~G~~~~-~~P~i~GHE~~G~Vv~vG~~v   80 (198)
T d2jhfa1           2 TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT-PLPVIAGHEAAGIVESIGEGV   80 (198)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-CSSBCCCCSEEEEEEEECTTC
T ss_pred             CCCCceEEEEEEEecCCCCCEEEEEECCCCCCCEEEEEEEEEecccccceeecCCccc-ccceecccceeEEEEecCccc
Confidence            4567899999999999999999999999999999999999999999999999998765 689999999999999999999


Q ss_pred             CccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEE
Q 026140           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (243)
Q Consensus        90 ~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~  169 (243)
                      +++++||+|++.+..+|+.|.+|..+..++|+........+...++... ...+|...+++.+.|+|+||++++..++++
T Consensus        81 ~~~~vGdrV~v~~~~~c~~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~G~fAEy~~v~~~~~~~  159 (198)
T d2jhfa1          81 TTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSR-FTCRGKPIHHFLGTSTFSQYTVVDEISVAK  159 (198)
T ss_dssp             CSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCS-EEETTEEEBCSTTTCCSBSEEEEEGGGEEE
T ss_pred             cCcCCCCEEEEeeeecccccccccCCccceeccccccccCccccCcccc-ccccCceeccCCCCCcccCeEEeCHHHeEE
Confidence            9999999999999999999999999999999998876445544444222 225666677777779999999999999999


Q ss_pred             cCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEE
Q 026140          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  208 (243)
Q Consensus       170 ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~  208 (243)
                      +|+.++++.++...+++.+...+   ...+++|++|+|+
T Consensus       160 ~p~~~~~e~l~~~~~~~~~v~~g---~~~l~~G~~VaVi  195 (198)
T d2jhfa1         160 IDAAFALDPLITHVLPFEKINEG---FDLLRSGESIRTI  195 (198)
T ss_dssp             CCTTSCCGGGEEEEEEGGGHHHH---HHHHHTTCCSEEE
T ss_pred             CCCCCCHHHHHHHHHHHHhhhhC---CceeeCCCEEEEE
Confidence            99999887766655555543332   2235789998886

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=2e-35  Score=236.57  Aligned_cols=172  Identities=27%  Similarity=0.339  Sum_probs=153.2

Q ss_pred             CCceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCc
Q 026140           13 KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDG   91 (243)
Q Consensus        13 ~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~   91 (243)
                      +|.+|||+++.+++++++++|++.|.|++|||||||++++||++|+++++|.++. ..+|.++|||++|+|+++|+++++
T Consensus         2 ~P~tMkA~v~~~~g~pl~l~evp~P~~~~~evlVkv~a~gic~~D~~~~~G~~~~~~~~P~i~GhE~~G~V~~~G~~v~~   81 (175)
T d1llua1           2 LPQTMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAVGSGVTR   81 (175)
T ss_dssp             CCSEEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCS
T ss_pred             cchhcEEEEEEeCCCCCEEEEeECCCCCCCEEEEEEEEecCcccchhhhccCccccccCCcCCCCcceEEEEEeCCCccc
Confidence            5789999999999988999999999999999999999999999999999998753 578999999999999999999999


Q ss_pred             cCCCCEEEeec-cCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEc
Q 026140           92 VVEGDVVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (243)
Q Consensus        92 ~~~Gd~Vv~~~-~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i  170 (243)
                      |++||+|+..+ ...|+.|.+|..+.+++|.....   .|...+|                   +|+||+++++++++++
T Consensus        82 ~~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~---~G~~~~g-------------------g~aey~~v~~~~~~~i  139 (175)
T d1llua1          82 VKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQN---TGYSVNG-------------------GYAEYVLADPNYVGIL  139 (175)
T ss_dssp             CCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEECTTTSEEC
T ss_pred             cccCCEEEeccccccCCccccccCCcccccccccc---ccccccc-------------------ccceEEEechHHEEEC
Confidence            99999998654 56799999999999999987765   4555555                   8999999999999999


Q ss_pred             CCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEE
Q 026140          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  208 (243)
Q Consensus       171 p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~  208 (243)
                      |++++++.++++...+.|+++++ + .+..+|++|||+
T Consensus       140 Pd~l~~~~a~~~~~~~~t~~~~~-~-~g~~~G~~VLVl  175 (175)
T d1llua1         140 PKNVKATIHPGKLDDINQILDQM-R-AGQIEGRIVLEM  175 (175)
T ss_dssp             CTTCCCCEEEECGGGHHHHHHHH-H-TTCCSSEEEEEC
T ss_pred             CCCCChhHHHHHHhHHHHHHHHH-H-hCCCCCCEEEeC
Confidence            99999998888888999998864 3 345579999985

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=100.00  E-value=5.1e-36  Score=240.81  Aligned_cols=170  Identities=25%  Similarity=0.384  Sum_probs=150.7

Q ss_pred             eeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCC---CCCCCCeeeecceeEEEEEeCCCCCccCC
Q 026140           18 RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFPRILGHEAIGVVESVGENVDGVVE   94 (243)
Q Consensus        18 ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~   94 (243)
                      .|++|+++++ ++++|++.|.|+++|||||+++++||++|++++++..   ....+|.++|||++|+|+++|+++++|++
T Consensus         3 maAVl~g~~~-l~~~e~~~P~~~~~evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v~~~~~   81 (178)
T d1e3ja1           3 LSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKK   81 (178)
T ss_dssp             EEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSCCT
T ss_pred             eEEEEEcCCc-EEEEEeECCCCCCCEEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecCcccCCCCC
Confidence            3455678887 9999999999999999999999999999999987644   22467899999999999999999999999


Q ss_pred             CCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC
Q 026140           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (243)
Q Consensus        95 Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~  174 (243)
                      ||+|++.+..+|+.|.+|..+..++|......  .+...+                   |+|+||++++.++++++|+++
T Consensus        82 GdrV~~~~~~~~~~c~~c~~g~~~~c~~~~~~--~~~~~~-------------------G~~aey~~v~~~~~~~iP~~~  140 (178)
T d1e3ja1          82 GDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFC--ATPPDD-------------------GNLARYYVHAADFCHKLPDNC  140 (178)
T ss_dssp             TCEEEECCEECCSSSHHHHTTCGGGCTTCEET--TBTTBC-------------------CSCBSEEEEEGGGEEECCTTC
T ss_pred             CCEEEECcccccCCccccccCCccccccccce--eccccc-------------------cccceeeeecccceeeCCCCC
Confidence            99999999999999999999999999877652  111233                   499999999999999999999


Q ss_pred             ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC
Q 026140          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL  210 (243)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga  210 (243)
                      ++++++.+.+.+.|+|+++ +.+++++|++|+|+|+
T Consensus       141 ~~~~aa~~~~~~~ta~~a~-~~~~~~~g~~VlVig~  175 (178)
T d1e3ja1         141 NVKQLVTHSFKLEQTVDAF-EAARKKADNTIKVMIS  175 (178)
T ss_dssp             CCGGGEEEEEEGGGHHHHH-HHHHHCCTTCSEEEEE
T ss_pred             CHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEEcc
Confidence            9999999999999999974 7889999999999985

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=4e-35  Score=234.22  Aligned_cols=166  Identities=27%  Similarity=0.418  Sum_probs=150.9

Q ss_pred             eeEEeccCCCCeEEEEEecCCC-CCCeEEEEEeeeecChhhhhhhhCCCC---CCCCCeeeecceeEEEEEeCCCCCccC
Q 026140           18 RAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDGVV   93 (243)
Q Consensus        18 ka~~~~~~~~~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~vlG~e~~G~Vv~vG~~v~~~~   93 (243)
                      ||+++.+++++|++++++.|++ .+|||||||.+++||++|++++.|.++   ...+|.++|||++|+|+++|+++++|+
T Consensus         1 kA~~~~~~g~pl~i~~v~~P~~~~~~eVlVkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~vG~~v~~~~   80 (171)
T d1h2ba1           1 KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLE   80 (171)
T ss_dssp             CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCCSCC
T ss_pred             CEEEEEeCCCCCEEEEeeCCCCCCCCEEEEEEEecccceeeehccCCCcccccCCccccccceeeeeeeecccCCCCcCC
Confidence            7999999999999999999985 689999999999999999999988653   246899999999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (243)
Q Consensus        94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~  173 (243)
                      +||+|++.+..+|+.|.+|+.+.+++|+....   .|...+|                   +|+||++++.++++++|++
T Consensus        81 ~GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~  138 (171)
T d1h2ba1          81 KGDPVILHPAVTDGTCLACRAGEDMHCENLEF---PGLNIDG-------------------GFAEFMRTSHRSVIKLPKD  138 (171)
T ss_dssp             TTCEEEECSCBCCSCSHHHHTTCGGGCTTCBC---BTTTBCC-------------------SSBSEEEECGGGEEECCTT
T ss_pred             CCCEEEEcCccCCCCccccccccccccccccc---ceeeccc-------------------ccceeeeehhhcceecCCC
Confidence            99999999999999999999999999988775   4555555                   9999999999999999999


Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEE
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVI  207 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI  207 (243)
                      ++++.++++.+++.|+|+++ +.+++ .|++|||
T Consensus       139 ~~~e~aa~~~~~~~ta~~al-~~~~~-~G~~VlI  170 (171)
T d1h2ba1         139 VRVEVDIHKLDEINDVLERL-EKGEV-LGRAVLI  170 (171)
T ss_dssp             CCCCEEEEEGGGHHHHHHHH-HTTCC-SSEEEEE
T ss_pred             CCHHHHHHHHhHHHHHHHHH-HhcCC-CCCEEEe
Confidence            99998888888999999975 56777 8999998

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.2e-34  Score=231.19  Aligned_cols=181  Identities=19%  Similarity=0.262  Sum_probs=151.0

Q ss_pred             CCCceeeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCC
Q 026140           12 GKPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (243)
Q Consensus        12 ~~~~~~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v   89 (243)
                      +.|.+|||+++..+++.  +++++++.++++++||||||.+++||++|++++.|.++...+|+++|||++|+|+++|+++
T Consensus         2 ~~P~~~ka~~~~~~~~~~~~~~~~~~p~p~~~~eVlVkv~a~giC~sDl~~~~g~~~~~~~P~i~GHE~~G~Vv~vG~~v   81 (192)
T d1piwa1           2 SYPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKS   81 (192)
T ss_dssp             CTTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECTTC
T ss_pred             CCCceeEEEEEeCCCcCCcceEeeccCCCCCCCeEEEEEeeeCCCcchHHHHcCCCCCCCCCcCcccccccchhhccccc
Confidence            35789999999888864  6777777666799999999999999999999999988778899999999999999999988


Q ss_pred             -CccCCCCEEEeecc-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcE
Q 026140           90 -DGVVEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHV  167 (243)
Q Consensus        90 -~~~~~Gd~Vv~~~~-~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~  167 (243)
                       +.+++||+|.+.+. .+|+.|.+|+.+.+++|++.... +.+....|              +...|+|+||++++.+++
T Consensus        82 ~~~~k~GdrV~~~~~~~~c~~c~~c~~g~~~~C~~~~~~-~~~~~~~G--------------~~~~Ggfaey~~v~~~~~  146 (192)
T d1piwa1          82 NSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTT-YSQPYEDG--------------YVSQGGYANYVRVHEHFV  146 (192)
T ss_dssp             CSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEES-SSCBCTTS--------------CBCCCSSBSEEEEEGGGE
T ss_pred             ccccCCCCeeeEeeeccCCCCchhhhcCCcccccccccc-cccccccc--------------cccccceeeEEEeehHHe
Confidence             56999999976664 57999999999999999887643 11111122              111249999999999999


Q ss_pred             EEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEE
Q 026140          168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  208 (243)
Q Consensus       168 ~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~  208 (243)
                      +++|+++++++|+.+.+.+.|||+++ ..+++++|++|||.
T Consensus       147 ~~iP~~l~~e~Aal~~~~~~ta~~~l-~~~~vk~g~~Vvv~  186 (192)
T d1piwa1         147 VPIPENIWVETLPVGEAGVHEAFERM-EKGDVRYRFTLVGY  186 (192)
T ss_dssp             EECCTTCCEEEEESSHHHHHHHHHHH-HHTCCSSEEEEECC
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEE
Confidence            99999999988877665678999965 68999999999985

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4.3e-34  Score=230.53  Aligned_cols=176  Identities=23%  Similarity=0.347  Sum_probs=145.5

Q ss_pred             CCceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCC--
Q 026140           13 KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD--   90 (243)
Q Consensus        13 ~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~--   90 (243)
                      |++++||+++.++++++++++++.|.|+++||||||.+++||++|+++++|.++...+|.++|||++|+|+++|+++.  
T Consensus         1 m~~k~kA~v~~~~~~pl~i~ev~~P~~~~~evlVkv~a~gIC~sD~~~~~G~~~~~~~P~vlGHE~~G~V~~vG~~v~~~   80 (184)
T d1vj0a1           1 MGLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVNGEKRDL   80 (184)
T ss_dssp             CCEEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEESSCCBCT
T ss_pred             CCceEEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEECCCCCchhheeccCCccccccccceeeeeeeeEEecccccc
Confidence            578999999999999999999999999999999999999999999999999887778999999999999999999986  


Q ss_pred             ---ccCCCCEEEeeccCCCCCCccccCCCCC-CCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEec-cC
Q 026140           91 ---GVVEGDVVIPHFLADCTECVGCRSKKGN-LCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLD-IA  165 (243)
Q Consensus        91 ---~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~-~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~-~~  165 (243)
                         ++++||+|++.+..+|++|.+|+.+.+. .|++...   .|+...-         ....++  .|+|+||++++ ..
T Consensus        81 ~~~~~~~Gd~V~~~~~~~Cg~C~~C~~g~~~~~c~~~~~---~G~~~~~---------~~~~~~--~Gg~ae~~~v~~~~  146 (184)
T d1vj0a1          81 NGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV---YGINRGC---------SEYPHL--RGCYSSHIVLDPET  146 (184)
T ss_dssp             TSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEE---TTTTCCS---------SSTTCC--CSSSBSEEEECTTC
T ss_pred             ccccccceeeeEeccccccccChhHhCccccccCCCcee---eccCCCC---------CCCCCc--ceeCcCcEEechhH
Confidence               4679999999999999999999999865 5776654   2321100         000011  25999999996 57


Q ss_pred             cEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEEC
Q 026140          166 HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG  209 (243)
Q Consensus       166 ~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~G  209 (243)
                      +++++|++++++++      +++|+++ ++.+++++|++|||+-
T Consensus       147 ~v~~ip~~l~~~~p------l~~A~~a-~~~~~~~~G~~VlI~~  183 (184)
T d1vj0a1         147 DVLKVSEKITHRLP------LKEANKA-LELMESREALKVILYP  183 (184)
T ss_dssp             CEEEECTTCCEEEE------GGGHHHH-HHHHHHTSCSCEEEEC
T ss_pred             cEEECCCCCCHHHH------HHHHHHH-HHHhCCCcCCEEEEee
Confidence            99999999997643      3456665 4678899999999973

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=100.00  E-value=3.6e-36  Score=241.49  Aligned_cols=170  Identities=18%  Similarity=0.087  Sum_probs=141.2

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd   96 (243)
                      |||+++.++++ ++++|+|.|.|+++|||||+++++||++|++++.+......+|.++|||++|+|+++|+++++|++||
T Consensus         1 MKa~v~~~~~~-l~i~e~p~P~~~~~eVlIkv~a~gic~sD~~~~~~~~~~~~~P~i~GhE~~G~V~~vG~~v~~~~vGd   79 (177)
T d1jqba1           1 MKGFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGSEVKDFKPGD   79 (177)
T ss_dssp             CEEEEEEETTE-EEEEECCCCCCCTTCEEEEEEEECCCHHHHHHHHHCTTCCCSSEECCCCEEEEEEEECTTCCSCCTTC
T ss_pred             CeEEEEEeCCC-eEEEEeeCCCCCCCEEEEEEEEEecCCCcccccccCCCCCCCCccCcceeeEEeeecccccceecCCC
Confidence            89999999998 99999999999999999999999999999988866555567899999999999999999999999999


Q ss_pred             EEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEecc--CcEEEcCCCC
Q 026140           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI--AHVVKVDPTV  174 (243)
Q Consensus        97 ~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~--~~~~~ip~~~  174 (243)
                      ||++.+..+|++|.+|+.+.+++|.........|...+|                   +|+||++++.  .+++++|+++
T Consensus        80 rV~v~~~~~cg~c~~C~~g~~~~c~~~~~~~~~g~~~~G-------------------~~aEy~~vp~a~~~l~~iP~~~  140 (177)
T d1jqba1          80 RVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDG-------------------VFGEYFHVNDADMNLAILPKDV  140 (177)
T ss_dssp             EEEECSCCCCSSSHHHHTTCGGGTTSTTTTCCBTTTBCC-------------------SSBSSEEESSHHHHCEECCTTS
T ss_pred             cEEEeeeeccccccchhhhhhcccccccccccccCCCCh-------------------hcCeeEEEEhhhCeEEECCCCc
Confidence            999999999999999999999999887653233333444                   9999999985  4799999999


Q ss_pred             ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHH
Q 026140          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAV  217 (243)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~  217 (243)
                      ++++++.......++   +        ++.++|+|+|++|+.+
T Consensus       141 ~~~~~~~~~~~~~~~---~--------~~~vlv~g~gp~gl~a  172 (177)
T d1jqba1         141 DLSKLVTHVYHGFDH---I--------EEALLLMKDKPKDLIK  172 (177)
T ss_dssp             CGGGGEEEEEESGGG---H--------HHHHHHHHHCCTTCSE
T ss_pred             chHHHHHHHHHHHHH---h--------cCceEEECCCHHHhhe
Confidence            998877654332222   1        2336666777766543

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-34  Score=230.69  Aligned_cols=170  Identities=25%  Similarity=0.391  Sum_probs=146.9

Q ss_pred             eeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCC---CCCCCCeeeecceeEEEEEeCCCCCcc
Q 026140           16 QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFPRILGHEAIGVVESVGENVDGV   92 (243)
Q Consensus        16 ~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~~~~p~vlG~e~~G~Vv~vG~~v~~~   92 (243)
                      .++|++++++++ ++++|++.|+|+++||||||++++||++|++++++..   ....+|.++|||++|+|+++|+++++|
T Consensus         7 ~~~a~V~~gp~~-l~l~evp~P~p~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~   85 (185)
T d1pl8a1           7 NNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHL   85 (185)
T ss_dssp             CCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCSC
T ss_pred             CCEEEEEeCCCe-EEEEEeECCCCCCCEEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEeccceeee
Confidence            578999999987 9999999999999999999999999999999997543   224688999999999999999999999


Q ss_pred             CCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCceeecccccceeeeeEEeccCcEEEcC
Q 026140           93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (243)
Q Consensus        93 ~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip  171 (243)
                      ++||+|++.+..+|+.|.+|+.+.+++|....+   .|.. .+                   |+|+||++++.++++++|
T Consensus        86 ~~GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~---~g~~~~~-------------------G~~aey~~~~~~~~~~lP  143 (185)
T d1pl8a1          86 KPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFF---CATPPDD-------------------GNLCRFYKHNAAFCYKLP  143 (185)
T ss_dssp             CTTCEEEECSEECSSCCHHHHTTCGGGCTTCEE---TTBTTBC-------------------CSCBSEEEEEGGGEEECC
T ss_pred             cccccceecceeccccchhhccchhchhcccee---eeccccc-------------------ccceEEEEEchHHEEECC
Confidence            999999999999999999999999999987765   3332 23                   489999999999999999


Q ss_pred             CCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCH
Q 026140          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGS  212 (243)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~  212 (243)
                      +++++++|++++  +++++++ ++..+.++|++||| |+|+
T Consensus       144 ~~~~~~~aa~~p--l~~a~~a-~~~~~~~~G~~VlI-g~GP  180 (185)
T d1pl8a1         144 DNVKPLVTHRFP--LEKALEA-FETFKKGLGLKIML-KCDP  180 (185)
T ss_dssp             TTCGGGEEEEEE--GGGHHHH-HHHHHTTCCSEEEE-ECCT
T ss_pred             CCCCHHHHHHHH--HHHHHHH-HHHhCCCCCCEEEE-EeCC
Confidence            999999887654  4556664 45677899999998 5553

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=4e-36  Score=245.89  Aligned_cols=191  Identities=18%  Similarity=0.254  Sum_probs=153.9

Q ss_pred             eeeEEeccCCCCeEEEEEecCCC-------CCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPP-------NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~-------~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v   89 (243)
                      +||++|+++++ ++++|++.|++       .++||||||.+++||++|+++++|.++. .+|.++|||++|+|+++|+++
T Consensus         2 ~kA~v~~~~~~-le~~e~~~P~~~~p~~~p~~~eVlVkv~a~giC~sDl~~~~G~~~~-~~P~v~GHE~~G~Vv~vG~~V   79 (201)
T d1kola1           2 NRGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTA-QVGLVLGHEITGEVIEKGRDV   79 (201)
T ss_dssp             EEEEEEEETTE-EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSCC-CTTCBCCCCEEEEEEEECTTC
T ss_pred             cEEEEEeCCCc-eEEEEecCCcccCCCCCCCCCEEEEEEEEEEEcchhhhhhcCCccc-ccceeccceeeeeeecccccc
Confidence            79999999998 99999999865       4699999999999999999999988764 789999999999999999999


Q ss_pred             CccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEecc--CcE
Q 026140           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI--AHV  167 (243)
Q Consensus        90 ~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~--~~~  167 (243)
                      ++|++||||++.+..+|+.|.+|+.+.+++|.........+.....  .        ..++  .|+|+||+++|.  .++
T Consensus        80 ~~~~vGdrV~v~~~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~g~~--~--------~~~~--~Gg~aeyv~vp~~~~~l  147 (201)
T d1kola1          80 ENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYV--D--------MGDW--TGGQAEYVLVPYADFNL  147 (201)
T ss_dssp             CSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCT--T--------SCCB--CCCSBSEEEESSHHHHC
T ss_pred             ccccccceeEEeeeeeccCChhhhCCCccccccccccccccccccc--C--------CCcc--ccccccEEEeehHHCeE
Confidence            9999999999999999999999999999999877654222221100  0        0001  259999999975  379


Q ss_pred             EEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Q 026140          168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA  226 (243)
Q Consensus       168 ~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~  226 (243)
                      +++|++..+.+++++...+.++++++ +..+.+.+    ++|+|++|++++|+||++|+
T Consensus       148 ~~iPd~~~~~~~~~~~~~~~~~~~a~-~~~~~~~g----~~g~G~vG~~~i~~ak~~GA  201 (201)
T d1kola1         148 LKLPDRDKAMEKINIAEVVGVQVISL-DDAPRGYG----EFDAGVPKKFVIDPHKTFSA  201 (201)
T ss_dssp             EECSCHHHHHHTCCHHHHHTEEEECG-GGHHHHHH----HHHHTCSCEEEECTTCSSCC
T ss_pred             EECCCCCChHHHHHHHHHHHHHHHHH-HhCCCCCe----EEeeCHHHHHHHHHHHHcCC
Confidence            99999877777776666777777643 33433333    35889999999999999886

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=7e-33  Score=222.07  Aligned_cols=167  Identities=25%  Similarity=0.398  Sum_probs=141.5

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC--------CCCCCeeeecceeEEEEEeCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF--------PAVFPRILGHEAIGVVESVGEN   88 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~--------~~~~p~vlG~e~~G~Vv~vG~~   88 (243)
                      |||++++++|++|+++|++.|+|++|||||||.+++||++|+++++|.++        ...+|+++|||++|+|+++|++
T Consensus         1 MKA~~~~~~G~pl~i~dv~~P~p~~~eVlVkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~~~g~~   80 (177)
T d1jvba1           1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE   80 (177)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred             CeEEEEEeCCCCCEEEEeeCCCCCCCEEEEEEEEEecccceeeeecCcccccccccccccCCCccccceEEEEEeeeccC
Confidence            89999999999999999999999999999999999999999999988643        2468999999999999999999


Q ss_pred             CCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCc-E
Q 026140           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH-V  167 (243)
Q Consensus        89 v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~-~  167 (243)
                      +++|++||+|++.+..+|+.|.+|+.+++++|+....   .|...+|                   +|+||++++..+ +
T Consensus        81 v~~~~~GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~vp~~~~~  138 (177)
T d1jvba1          81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRW---LGINFDG-------------------AYAEYVIVPHYKYM  138 (177)
T ss_dssp             CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEE---BTTTBCC-------------------SSBSEEEESCGGGE
T ss_pred             ccccccCceEeeeeccccccccccccccccccCCcce---eeecccc-------------------ccccEEEEEhHHeE
Confidence            9999999999999999999999999999999988764   4555555                   999999997655 5


Q ss_pred             EEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEE
Q 026140          168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVI  207 (243)
Q Consensus       168 ~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI  207 (243)
                      +++|+..+.+.|+....+..+++.++ ...++ .|++|||
T Consensus       139 ~~~~~~~~~~~a~~~~~~~~~a~~~~-~~~~~-~G~~VlI  176 (177)
T d1jvba1         139 YKLRRVKPMITKTMKLEEANEAIDNL-ENFKA-IGRQVLI  176 (177)
T ss_dssp             EECSSSCCCCEEEEEGGGHHHHHHHH-HTTCC-CSEEEEE
T ss_pred             EECCCCChHHHHHHHHHHHHHHHHHH-Hhhcc-cCCceEC
Confidence            56555444444444455788888864 56665 6899987

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=1.8e-32  Score=218.38  Aligned_cols=168  Identities=27%  Similarity=0.340  Sum_probs=143.2

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCC-CCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-FPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~-~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G   95 (243)
                      |||+++++++++++++|++.|.|++|||||||++++||++|++++++.+ ....+|.++|||++|+|+++|++++++++|
T Consensus         1 MkA~v~~~~g~pl~i~~v~~P~~~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~p~v~GhE~~G~Vv~vG~~v~~~~vG   80 (171)
T d1rjwa1           1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVG   80 (171)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEecCCCCcEEEEeECCCCCCCeEEEEEEEeeccccceeeeecccccccccccccCCEEEEEEEEecccccCceee
Confidence            8999999999999999999999999999999999999999999887653 446789999999999999999999999999


Q ss_pred             CEEEeec-cCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC
Q 026140           96 DVVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (243)
Q Consensus        96 d~Vv~~~-~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~  174 (243)
                      |+|++.+ ...|+.|..|..+.+++|.....   .|...+|                   +|+||++++.++++++|+++
T Consensus        81 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~~  138 (171)
T d1rjwa1          81 DRVGIPWLYSACGHCDYCLSGQETLCEHQKN---AGYSVDG-------------------GYAEYCRAAADYVVKIPDNT  138 (171)
T ss_dssp             CEEEECSEEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGCEECCTTC
T ss_pred             eEEeeccccccccccccccCCCccccccccc---cceeccC-------------------ccccceEecHHHEEECCCCC
Confidence            9997655 45688999999999999988765   4544455                   99999999999999999999


Q ss_pred             ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC
Q 026140          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL  210 (243)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga  210 (243)
                      +++.|+ +. ...++++++. .+.+ +|++|||+|.
T Consensus       139 ~~e~A~-l~-~~~~~~~~~~-~~~~-~G~tVlViG~  170 (171)
T d1rjwa1         139 IIEVQP-LE-KINEVFDRML-KGQI-NGRVVLTLED  170 (171)
T ss_dssp             CEEEEE-GG-GHHHHHHHHH-TTCC-SSEEEEECCC
T ss_pred             CHHHHH-HH-HHHHHHHHHH-hcCC-CCCEEEEeCC
Confidence            987655 34 4556666543 3444 5999999985

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=9.4e-32  Score=215.97  Aligned_cols=165  Identities=21%  Similarity=0.321  Sum_probs=133.6

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd   96 (243)
                      |||+...++++||+++|++.|+|++|||||||.+++||++|++++.|.+....+|.++|||++|+|+++|+++++|++||
T Consensus         1 m~a~~~~~~~~pl~i~ev~~P~pg~geVlVkv~a~gic~sDl~~~~g~~~~~~~P~i~GhE~~G~V~~vG~~V~~~~vGd   80 (179)
T d1uufa1           1 IKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKYAPGD   80 (179)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEECTTCCSCCTTC
T ss_pred             CeEEEEccCCCCCEEEEecCCCCCCCEEEEEEEEECCCCCcceeeeeeeccccccccccccccccchhhccccccCCCCC
Confidence            79999999999999999999999999999999999999999999999887778999999999999999999999999999


Q ss_pred             EEEeec-cCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCC
Q 026140           97 VVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (243)
Q Consensus        97 ~Vv~~~-~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~  175 (243)
                      +|.+.+ ..+|++|.+|+.+.+++|+++... +.+.....          .   ....|+|+||+++++++++++|+...
T Consensus        81 rV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~-~~~~~~~~----------~---~~~~GgfaEy~~v~~~~~~~ip~~~~  146 (179)
T d1uufa1          81 LVGVGCIVDSCKHCEECEDGLENYCDHMTGT-YNSPTPDE----------P---GHTLGGYSQQIVVHERYVLRIRVADI  146 (179)
T ss_dssp             EEEECSEEECCSSSHHHHTTCGGGCTTCEET-TTSBCSST----------T---SBCCCSSBSEEEEEGGGCEECCCCCE
T ss_pred             EEEEcccccccCccccccCcccccCCCcccc-ccccCCCC----------C---cccccccceEEEechHHEEECCCCCc
Confidence            997665 468999999999999999987643 11111110          0   01125999999999999999996543


Q ss_pred             hhhhcccchhhHhHHHHHHHhcCC
Q 026140          176 PNRACLLSCGVSTGVGAAWRTANV  199 (243)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~  199 (243)
                      ..  +. ..++.++++++ ..+.+
T Consensus       147 ~~--~~-a~~l~~a~~a~-~~a~v  166 (179)
T d1uufa1         147 EM--IR-ADQINEAYERM-LRGDV  166 (179)
T ss_dssp             EE--EC-GGGHHHHHHHH-HTTCS
T ss_pred             Ch--hH-hchhHHHHHHH-HHhCc
Confidence            22  22 22566777764 34443

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-29  Score=197.11  Aligned_cols=145  Identities=18%  Similarity=0.272  Sum_probs=129.6

Q ss_pred             eeeeEEeccCCCC--eEEE-EEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCc
Q 026140           16 QCRAAIATAPGEP--LVID-EVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDG   91 (243)
Q Consensus        16 ~~ka~~~~~~~~~--~~~~-e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~   91 (243)
                      -|||+++++++++  ++++ +++.|.|++|||||||++++||++|.+.++|.+.. ..+|.++|||++|+|+++|+++++
T Consensus         2 ~MkAv~~~~~G~p~~l~~~~~~~~P~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~~vG~~v~~   81 (150)
T d1yb5a1           2 LMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASA   81 (150)
T ss_dssp             EEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTCTT
T ss_pred             ceeEEEEEccCCcceEEEEeecCCCCCCCCeEEEEEEEecCcccchhhhcCCcCccccccccCccceeeeeEeecceeec
Confidence            4899999998876  7764 68999999999999999999999999999987654 468899999999999999999999


Q ss_pred             cCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcC
Q 026140           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (243)
Q Consensus        92 ~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip  171 (243)
                      |++||+|+....                             .+                   |+|+||+.++.++++++|
T Consensus        82 ~~vGdrV~~~~~-----------------------------~~-------------------G~~ae~~~v~~~~~~~iP  113 (150)
T d1yb5a1          82 FKKGDRVFTSST-----------------------------IS-------------------GGYAEYALAADHTVYKLP  113 (150)
T ss_dssp             CCTTCEEEESCC-----------------------------SS-------------------CSSBSEEEEEGGGEEECC
T ss_pred             cccCcccccccc-----------------------------cc-------------------cccccccccccccccccc
Confidence            999999975432                             11                   499999999999999999


Q ss_pred             CCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEE
Q 026140          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  208 (243)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~  208 (243)
                      +++++++|+++++...|+|++++..+....|+++||+
T Consensus       114 ~~ls~~~Aa~~~~~~~ta~~~~~~~g~~~~G~~vliL  150 (150)
T d1yb5a1         114 EKLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  150 (150)
T ss_dssp             TTCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             CCCCHHHHHHhhhhhhhehhhheEEcCcccCCEEEEC
Confidence            9999999999999999999988888899999999984

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.9e-27  Score=184.71  Aligned_cols=141  Identities=19%  Similarity=0.189  Sum_probs=122.0

Q ss_pred             eeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140           18 RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (243)
Q Consensus        18 ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G   95 (243)
                      +.+.|.++|.+  |++++.+.|.|++|||||||++++||++|+++++|.++...+|.++|||++|+|+++|+++++|++|
T Consensus         2 ~~i~~~~~G~pe~l~~~e~~~P~p~~~eVlVkv~a~~in~~D~~~~~G~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vG   81 (147)
T d1qora1           2 TRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIKAG   81 (147)
T ss_dssp             EEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             eEEEEcccCCCceeEEEEecCCCCCCCEEEEEEEEecccceeeeeecCCCCCCcceeeeccccccceeeeeeeccccccc
Confidence            45789999987  8999999999999999999999999999999999998878899999999999999999999999999


Q ss_pred             CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCC
Q 026140           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (243)
Q Consensus        96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~  175 (243)
                      |+|+....                             ..                   |+|+||++++.+.++++|++++
T Consensus        82 drV~~~~~-----------------------------~~-------------------G~~ae~~~v~~~~~~~~P~~~~  113 (147)
T d1qora1          82 DRVVYAQS-----------------------------AL-------------------GAYSSVHNIIADKAAILPAAIK  113 (147)
T ss_dssp             CEEEESCC-----------------------------SS-------------------CCSBSEEEEEGGGEEECCTTSC
T ss_pred             ceeeeecc-----------------------------cc-------------------ccceeEEEEehHHeEEcCcccc
Confidence            99963211                             11                   4899999999999999999998


Q ss_pred             hhhhc--ccchhhHhHHHHHHHhcCCCCCCEEEE
Q 026140          176 PNRAC--LLSCGVSTGVGAAWRTANVEVGSTVVI  207 (243)
Q Consensus       176 ~~~aa--~~~~~~~ta~~~l~~~~~~~~g~~VlI  207 (243)
                      +++++  .+++...+++++++ ..++++|++|||
T Consensus       114 ~~~a~a~~~~~~~~~~~~~l~-~~~~~~G~~VLI  146 (147)
T d1qora1         114 VDVAEQQKYPLKDAQRAHEIL-ESRATQGSSLLI  146 (147)
T ss_dssp             CCCCGGGEEEGGGHHHHHHHH-HTTCCCBCCEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHH-HhCCCCCCEEEe
Confidence            87554  45666777777665 467899999998

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.95  E-value=1.8e-27  Score=185.90  Aligned_cols=148  Identities=20%  Similarity=0.141  Sum_probs=124.5

Q ss_pred             ceeeeEEeccCCCCe--EEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCc
Q 026140           15 IQCRAAIATAPGEPL--VIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDG   91 (243)
Q Consensus        15 ~~~ka~~~~~~~~~~--~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~   91 (243)
                      .+|||+++.++++++  ++++++.|+|++|||||||++++||++|.+.+.|.++. ...|.++|+|++|+|++  ..++.
T Consensus         2 ~~~KA~v~~~~~~~~~~~i~~v~~P~~~~~eVlVkV~a~gin~~D~~~~~g~~~~~~~~p~v~g~e~~G~v~~--~~~~~   79 (152)
T d1xa0a1           2 SAFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVS--SQHPR   79 (152)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEE--CCSSS
T ss_pred             CceEEEEEEecCCceEEEEEEccCCCCCCCEEEEEEEEeCCChHHHHHHhhcccccccccceeeeeeeeeeec--cCCCc
Confidence            469999999999864  47899999999999999999999999999988886643 56899999999999999  55678


Q ss_pred             cCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcC
Q 026140           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (243)
Q Consensus        92 ~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip  171 (243)
                      |++||+|+.....                        .+...+                   |+|+||++++.++++++|
T Consensus        80 ~~~g~~v~~~~~~------------------------~~~~~~-------------------G~~aEy~~v~~~~~~~iP  116 (152)
T d1xa0a1          80 FREGDEVIATGYE------------------------IGVTHF-------------------GGYSEYARLHGEWLVPLP  116 (152)
T ss_dssp             CCTTCEEEEESTT------------------------BTTTBC-------------------CSSBSEEEECGGGCEECC
T ss_pred             cccCCEEEEecCc------------------------cccccC-------------------CCcceeeeehhhccccCC
Confidence            9999999754321                        122223                   499999999999999999


Q ss_pred             CCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEEC
Q 026140          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG  209 (243)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~G  209 (243)
                      ++++ .+|+++++...|++.++....+++ |++|||+|
T Consensus       117 ~~l~-~~aa~l~~a~~ta~~~~~~~~~~~-G~tVL~l~  152 (152)
T d1xa0a1         117 KGLE-RIAQEISLAELPQALKRILRGELR-GRTVVRLA  152 (152)
T ss_dssp             TTHH-HHEEEEEGGGHHHHHHHHHHTCCC-SEEEEECC
T ss_pred             CCCC-HHHHHHHHHHHHHHHHHHHhcCCC-CCEEEEcC
Confidence            9998 478888889899988888878775 99999975

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=1.6e-27  Score=181.71  Aligned_cols=130  Identities=18%  Similarity=0.185  Sum_probs=116.2

Q ss_pred             eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVEG   95 (243)
Q Consensus        17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~~G   95 (243)
                      |||+++.+++++++++|++.|.|++||||||+++++||+.|+++++|.+.. ..+|+++|+|++|+|           +|
T Consensus         1 MkA~~~~~~G~~l~~~e~~~p~p~~~eVlVkv~a~gin~~D~~~~~G~~~~~~~~P~v~G~E~~G~V-----------vG   69 (131)
T d1iz0a1           1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVV-----------EG   69 (131)
T ss_dssp             CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEE-----------TT
T ss_pred             CcEEEEccCCCCCEEEEccCCCCCCCEEEEEEEEEeccccccccccccccccccceeEeeeeeEEee-----------cc
Confidence            799999999999999999999999999999999999999999999998755 468999999999999           39


Q ss_pred             CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCC
Q 026140           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (243)
Q Consensus        96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~  175 (243)
                      |+|.....                              .                   |+|+||++++.++++++|++++
T Consensus        70 d~V~~~~~------------------------------~-------------------G~~aey~~v~~~~~~~~P~~~~  100 (131)
T d1iz0a1          70 RRYAALVP------------------------------Q-------------------GGLAERVAVPKGALLPLPEGRP  100 (131)
T ss_dssp             EEEEEECS------------------------------S-------------------CCSBSEEEEEGGGCEECCTTCC
T ss_pred             ceEEEEec------------------------------c-------------------CccceeeeeCHHHeEEccCCCC
Confidence            99964321                              1                   4999999999999999999999


Q ss_pred             hhhhcccchhhHhHHHHHHHhcCCCCCCEEEEE
Q 026140          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  208 (243)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~  208 (243)
                      +++||.+.+.+.|||+++.+.+  +.|++||++
T Consensus       101 ~~~aa~~~~~~~Ta~~al~~~g--~~g~tvl~l  131 (131)
T d1iz0a1         101 VVGPVFPFAEAEAAFRALLDRG--HTGKVVVRL  131 (131)
T ss_dssp             CEEEEEEGGGHHHHHHHTTCTT--CCBEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc--cCCCEEEEC
Confidence            9999999999999999886655  569999873

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=9.1e-25  Score=169.32  Aligned_cols=130  Identities=14%  Similarity=0.029  Sum_probs=109.6

Q ss_pred             eeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccC
Q 026140           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (243)
Q Consensus        17 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~   93 (243)
                      |||+++.+++++  +++++++.|+|++|||||||.|++||+.|...+.|.++. ..+|.++|+|++|+|+++|.+  .++
T Consensus         1 MkA~v~~~~~~~~~l~i~~v~~p~~~~geVlVkV~a~gin~~D~~~~~G~~~~~~~~p~v~G~e~~G~V~~~~~~--~~~   78 (146)
T d1o89a1           1 LQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIPGIDFAGTVRTSEDP--RFH   78 (146)
T ss_dssp             CEEEEEECC---CEEEEEECCGGGSCSCSEEEEEEEEECCHHHHHHHHTCSSCCCSSSBCCCSEEEEEEEEECST--TCC
T ss_pred             CeEEEEEcCCCceEEEEEEcCCCCCCCCEEEEEEeeccCccceeeEEEeecccccccceeccccccccceeeccC--Ccc
Confidence            899999999887  677899999999999999999999999999999987644 478999999999999998764  699


Q ss_pred             CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (243)
Q Consensus        94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~  173 (243)
                      +||+|++....                        .|...+|                   +|+||++++.++++++|++
T Consensus        79 ~g~~v~~~~~~------------------------~g~~~~G-------------------~~Aey~~v~~~~vv~lP~~  115 (146)
T d1o89a1          79 AGQEVLLTGWG------------------------VGENHWG-------------------GLAEQARVKGDWLVAMPQG  115 (146)
T ss_dssp             TTCEEEEECTT------------------------BTTTBCC-------------------SSBSEEEECGGGCEECCTT
T ss_pred             ceeeEEeeccc------------------------ceecCCC-------------------cceeeeeeeeeeEEECCCC
Confidence            99999764321                        2333334                   9999999999999999999


Q ss_pred             CChhhhcccchhhHhHHH
Q 026140          174 VPPNRACLLSCGVSTGVG  191 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~  191 (243)
                      +++++||++++...||+.
T Consensus       116 ls~~eAA~l~~a~~tA~~  133 (146)
T d1o89a1         116 QAAKEISLSEAPNFAEAI  133 (146)
T ss_dssp             SCCEEECGGGHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            999999999988888754

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.92  E-value=1.2e-26  Score=183.08  Aligned_cols=150  Identities=17%  Similarity=0.142  Sum_probs=125.0

Q ss_pred             ceeeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCc
Q 026140           15 IQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDG   91 (243)
Q Consensus        15 ~~~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~   91 (243)
                      ..|||+++.+++++  +++++++.|+|++|||||||+|++||++|.+.+.|.++. ...|.++|+|++|+|++  +.+++
T Consensus         2 ~~~ka~~~~~~g~~~~l~~~~v~~p~l~~~eVLVkV~a~gin~~D~~~~~g~~~~~~~~~~~~g~e~~G~v~~--~~~~~   79 (162)
T d1tt7a1           2 TLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVS--SNDPR   79 (162)
T ss_dssp             CEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEE--CSSTT
T ss_pred             CcEEEEEEEecCCCeEEEEEEcCCCCCCCCEEEEEEEEecccchhhheeeecccccccceeeeeeeccccccc--ccccc
Confidence            46999999988876  889999999999999999999999999999999887654 46788999999999998  56678


Q ss_pred             cCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcC
Q 026140           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (243)
Q Consensus        92 ~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip  171 (243)
                      +++||+|+.....                        .|...+|                   +|+||+++++++++++|
T Consensus        80 ~~~g~~v~~~~~~------------------------~g~~~~G-------------------~~aey~~v~~~~l~~iP  116 (162)
T d1tt7a1          80 FAEGDEVIATSYE------------------------LGVSRDG-------------------GLSEYASVPGDWLVPLP  116 (162)
T ss_dssp             CCTTCEEEEESTT------------------------BTTTBCC-------------------SSBSSEEECGGGEEECC
T ss_pred             cccceeeEeeecc------------------------ceecccc-------------------ccceEEEecHHHEEECC
Confidence            9999999765431                        3333344                   99999999999999999


Q ss_pred             CCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC
Q 026140          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL  210 (243)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga  210 (243)
                      +++++++||.+++...|+|.++. ......+++|||.|+
T Consensus       117 ~~ls~~~Aa~~~~~~~ta~~~~~-~~~~~~~~~Vli~ga  154 (162)
T d1tt7a1         117 QNLSLKEAMVDQLLTIVDREVSL-EETPGALKDILQNRI  154 (162)
T ss_dssp             TTCCHHHHHHSCSTTSEEEEECS-TTHHHHHHHTTTTCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEECC
Confidence            99999999999999999987532 333445567777776

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.91  E-value=1.4e-26  Score=184.02  Aligned_cols=155  Identities=19%  Similarity=0.147  Sum_probs=126.4

Q ss_pred             ceeeeEEeccCCCC---eEE--EEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC----------CCCCeeeeccee
Q 026140           15 IQCRAAIATAPGEP---LVI--DEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP----------AVFPRILGHEAI   79 (243)
Q Consensus        15 ~~~ka~~~~~~~~~---~~~--~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~----------~~~p~vlG~e~~   79 (243)
                      .++||++++++|+|   +++  .+++.|+|+++||||||++++||++|+++++|.++.          ...|.++|+|++
T Consensus         2 ~t~kA~v~~~~G~p~~~l~l~~~~~p~p~~~~~eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~~   81 (175)
T d1gu7a1           2 ITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGL   81 (175)
T ss_dssp             EEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCCE
T ss_pred             ceeEEEEEccCCCcccccEEEEEECCCCCCCcCEEEEEEEEeccCcceeEEEecCcccccccccccCCCCCCcccccccc
Confidence            58999999999986   444  567777889999999999999999999999886533          357789999999


Q ss_pred             EEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeee
Q 026140           80 GVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEY  159 (243)
Q Consensus        80 G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~  159 (243)
                      |+|+++|.++..++.||+|.....                             ..                   |+|+||
T Consensus        82 g~V~~~~~~~~~~~~g~~v~~~~~-----------------------------~~-------------------g~~aey  113 (175)
T d1gu7a1          82 FEVIKVGSNVSSLEAGDWVIPSHV-----------------------------NF-------------------GTWRTH  113 (175)
T ss_dssp             EEEEEECTTCCSCCTTCEEEESSS-----------------------------CC-------------------CCSBSE
T ss_pred             cccccccccccccccccceecccc-----------------------------cc-------------------ccccce
Confidence            999999999999999999964321                             11                   489999


Q ss_pred             EEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHH-hcCCCCCCEEEEECC--CHHHHHHHH
Q 026140          160 TVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR-TANVEVGSTVVIFGL--GSIGLAVAE  219 (243)
Q Consensus       160 ~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~-~~~~~~g~~VlI~Ga--G~vG~~~v~  219 (243)
                      ++++.++++++|++++.+.++  .+...|+|+++.. ..++++|++|||.|+  |++|++++|
T Consensus       114 ~~v~~~~~~~iP~~~~~~~a~--~~~~~ta~~~l~~~~~~~~~g~~vli~gaa~~gvG~~~iQ  174 (175)
T d1gu7a1         114 ALGNDDDFIKLPNPAQSKANG--KPNGLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLIT  174 (175)
T ss_dssp             EEEEGGGEEEECCHHHHHHTT--CSCCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEE
T ss_pred             eeehhhhccCCCccchhhhhc--cchHHHHHHHHHHHhcCCCCCCEEEEECccchhhhheEEe
Confidence            999999999999987644443  4466788876553 357899999999974  679987765

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.70  E-value=3.5e-16  Score=120.33  Aligned_cols=133  Identities=14%  Similarity=0.120  Sum_probs=100.8

Q ss_pred             ceeeeEEeccC--CCC----eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCC
Q 026140           15 IQCRAAIATAP--GEP----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN   88 (243)
Q Consensus        15 ~~~ka~~~~~~--~~~----~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~   88 (243)
                      +++|+|++.+.  |.|    |++++.+.|+|++||||||+++.++++.....+..    .....++..+++|+|++  ++
T Consensus         2 ~~~k~~vl~~~P~G~P~~~~f~l~e~~ip~~~~gevLvk~~~~svDp~~R~~~~~----~~~g~~~~g~~vg~Vv~--S~   75 (147)
T d1v3va1           2 VKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIASKR----LKEGAVMMGQQVARVVE--SK   75 (147)
T ss_dssp             CEEEEEEESSCCCSSCCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHGGG----SCTTSBCCCCEEEEEEE--ES
T ss_pred             cccEEEEEccCCCCCCcccceEEEEEECCCCCCCEEEEEEEEEeEcccccccccc----cccCCccccceEEEEEE--eC
Confidence            57899999987  433    89999999999999999999999998876543322    12334566789999988  66


Q ss_pred             CCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEE
Q 026140           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV  168 (243)
Q Consensus        89 v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~  168 (243)
                      .++|++||+|...                                                    ++|+||.+++.+.+.
T Consensus        76 ~~~f~~GD~V~g~----------------------------------------------------~gw~ey~v~~~~~l~  103 (147)
T d1v3va1          76 NSAFPAGSIVLAQ----------------------------------------------------SGWTTHFISDGKGLE  103 (147)
T ss_dssp             CTTSCTTCEEEEC----------------------------------------------------CCSBSEEEECSSSCE
T ss_pred             CCcccCCCEEEEc----------------------------------------------------cCCEeEEEeccceee
Confidence            7889999999632                                                    389999999999999


Q ss_pred             EcCCCCCh-----hhhcccchhhHhH-HHHHHHhcCCCCCCEEEE
Q 026140          169 KVDPTVPP-----NRACLLSCGVSTG-VGAAWRTANVEVGSTVVI  207 (243)
Q Consensus       169 ~ip~~~~~-----~~aa~~~~~~~ta-~~~l~~~~~~~~g~~VlI  207 (243)
                      ++|++++.     ...+++.....|| |..+  ....+.|++|++
T Consensus       104 kv~~~~~~~~~~~~~~~~lG~~Gmtaay~gl--~~~~k~Getvv~  146 (147)
T d1v3va1         104 KLLTEWPDKKIQYHEHVTKGFENMPAAFIEM--LNGANLGKAVVT  146 (147)
T ss_dssp             ECCTTCCTTSSCCCEEEEECGGGHHHHHHHH--HTTCCSSEEEEE
T ss_pred             EccccccccccchhhhHhccccchHHHHHHh--hCCCCCCCEEEe
Confidence            99876543     2344555566664 4444  344578999987

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.39  E-value=2.5e-13  Score=106.49  Aligned_cols=69  Identities=52%  Similarity=0.946  Sum_probs=64.4

Q ss_pred             ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcCC
Q 026140          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE  243 (243)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~~  243 (243)
                      ++++||++.|.+.|+|+++.+.+++++|++|+|+|+|++|++++|+++.+|+.+|++++++++|++++|
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak   70 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK   70 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHH
Confidence            578999999999999999888899999999999999999999999999999889999999999988753

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.39  E-value=3e-13  Score=106.50  Aligned_cols=68  Identities=46%  Similarity=0.814  Sum_probs=63.7

Q ss_pred             hhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcCC
Q 026140          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE  243 (243)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~~  243 (243)
                      +.+||++.|.+.|+|+++++.+++++|++|+|+|+|++|++++|+++++|+.+|++++++++|+++++
T Consensus         2 P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~   69 (174)
T d1p0fa2           2 PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI   69 (174)
T ss_dssp             CGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHH
Confidence            46799999999999999888899999999999999999999999999999989999999999998763

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.39  E-value=3.6e-13  Score=106.25  Aligned_cols=70  Identities=51%  Similarity=0.951  Sum_probs=65.8

Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcCC
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE  243 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~~  243 (243)
                      .++++|+.+.|.+.|+|+++.+.+++++|++|+|+|+|++|++++|+++.+|+.+||+++++++|+++++
T Consensus         2 ~P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak   71 (176)
T d1d1ta2           2 APPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAM   71 (176)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             cCHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHH
Confidence            3589999999999999999888899999999999999999999999999999889999999999998764

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.1e-13  Score=106.11  Aligned_cols=68  Identities=26%  Similarity=0.350  Sum_probs=63.5

Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++++||++++++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +||+++++++|++++
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~   69 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIV   69 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccc
Confidence            5899999999999999999888889999999999997 9999999999999999 899999999887765

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.36  E-value=6.8e-13  Score=104.45  Aligned_cols=69  Identities=46%  Similarity=0.841  Sum_probs=64.5

Q ss_pred             ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcCC
Q 026140          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE  243 (243)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~~  243 (243)
                      ++++||.+.|.+.|+|+++.+.+++++|++|+|+|+|++|++++|+++++|+.+|++++++++|+++++
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~   70 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK   70 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHH
Confidence            467899999999999999888999999999999999999999999999999988999999999988763

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=2.8e-13  Score=106.55  Aligned_cols=68  Identities=18%  Similarity=0.163  Sum_probs=63.7

Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +|+++||++++++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|++++++++|.+++
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~   69 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSA   69 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHH
Confidence            5899999999999999999888889999999999987 8899999999999999 999999999998765

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.34  E-value=8.9e-13  Score=102.48  Aligned_cols=67  Identities=24%  Similarity=0.352  Sum_probs=62.4

Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++++||.++|.+.|+|+++ +.+++++|++|+|+|+|++|++++|+++.+|+ +|++++++++|++++
T Consensus         1 v~f~~aA~l~ca~~Ta~~al-~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a   67 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGL-KQTNARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELA   67 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhh
Confidence            57899999999999999986 56899999999999999999999999999998 999999999998765

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.34  E-value=1.1e-12  Score=103.03  Aligned_cols=68  Identities=49%  Similarity=0.900  Sum_probs=64.4

Q ss_pred             ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++++||.++|.+.|+|+++.+.+++++|++|+|+|+|++|++++++++.+|+.+|++++++++|++++
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a   69 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKA   69 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHH
Confidence            57899999999999999988899999999999999999999999999999988999999999998875

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.30  E-value=1.4e-12  Score=102.18  Aligned_cols=67  Identities=24%  Similarity=0.367  Sum_probs=61.6

Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++++||.+++++.|||+++ +..++++|++|||+|+ |++|++++|+|+.+|+ +||+++++++|++++
T Consensus         1 ls~eeAA~l~~~~~TA~~al-~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~   68 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLAL-KRAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALP   68 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHH-HHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccc
Confidence            57899999999999999976 5689999999999997 9999999999999999 899999999888765

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.29  E-value=1.8e-12  Score=101.95  Aligned_cols=68  Identities=38%  Similarity=0.603  Sum_probs=63.3

Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +|+++|++++++++|+|+++ +.+++++|++|+|+|+|++|++++|+++.+|+.+|++++++++|++++
T Consensus         1 ip~e~A~~l~~~~~ta~~a~-~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a   68 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAA   68 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHH
T ss_pred             CCHHHHHHhhhHHHHHHHHH-HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHH
Confidence            57899999999999999975 779999999999999999999999999999998899999999998875

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.28  E-value=2.8e-12  Score=100.02  Aligned_cols=67  Identities=28%  Similarity=0.269  Sum_probs=61.0

Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++++.||.+.|...|+|+++ +..++++|++|+|+|+|++|++++|+++.+|+ +||+++++++|++++
T Consensus         1 lp~e~AApl~cag~Ta~~al-~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a   67 (168)
T d1piwa2           1 IPSHLAAPLLCGGLTVYSPL-VRNGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDA   67 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHTTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHh
Confidence            35677899999999999976 56899999999999999999999999999999 899999999998875

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.28  E-value=3.3e-12  Score=100.22  Aligned_cols=69  Identities=36%  Similarity=0.690  Sum_probs=64.0

Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++++.|+.++|.+.|+|+++++..++++|++|+|+|+|++|++++|+++.+|+..|++++++++|++++
T Consensus         1 vP~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a   69 (174)
T d1f8fa2           1 VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELA   69 (174)
T ss_dssp             SCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH
T ss_pred             CCHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHH
Confidence            357889999999999999989999999999999999999999999999999998888899999998875

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.26  E-value=5.6e-12  Score=98.60  Aligned_cols=68  Identities=56%  Similarity=0.907  Sum_probs=64.1

Q ss_pred             ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++++||++.|.+.|+|+++.+.+++++|++|+|+|+|++|++++++++.+++.+|++++++++|++++
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a   69 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKA   69 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHH
Confidence            57899999999999999988889999999999999999999999999999998999999999999875

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=2.7e-12  Score=87.23  Aligned_cols=69  Identities=13%  Similarity=0.152  Sum_probs=60.9

Q ss_pred             CChhhhcccchhhHhHHHHHH---HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcCC
Q 026140          174 VPPNRACLLSCGVSTGVGAAW---RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGE  243 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~---~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~~  243 (243)
                      +++++|+.+++...|||.+++   +....+++++|||+|+ |++|++++|+++.+|+ +|+++.+++++.++++
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~-~Vi~~t~s~~k~~~~~   73 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLK   73 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHH
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCC-eEEEEECCHHHHHHHH
Confidence            578999999999999987654   4456789999999988 9999999999999999 8999999999988753

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.24  E-value=3.4e-12  Score=100.66  Aligned_cols=67  Identities=25%  Similarity=0.267  Sum_probs=61.6

Q ss_pred             hhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++.+|.+.|...|+|+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|++++
T Consensus         3 ~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a   69 (182)
T d1vj0a2           3 LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLA   69 (182)
T ss_dssp             HHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHH
T ss_pred             HHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECCCccchhheeccccccccccccccccccccccc
Confidence            4578888999999999887778899999999999999999999999999998899999999998875

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=6.7e-12  Score=97.77  Aligned_cols=68  Identities=21%  Similarity=0.225  Sum_probs=60.7

Q ss_pred             CCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       173 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +.+++.+|.++|...|+|+++ +..++++|++|+|+|+|++|++++|+|+.+|+ ++|+++++++|++++
T Consensus         3 ~~~~a~~Apl~Cag~Tay~al-~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a   70 (168)
T d1uufa2           3 QEQLAAVAPLLCAGITTYSPL-RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAA   70 (168)
T ss_dssp             GGGHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHH
T ss_pred             cccHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHH
Confidence            445678888999999999976 67999999999999999999999999999999 788899999988765

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.22  E-value=2.9e-12  Score=101.01  Aligned_cols=68  Identities=10%  Similarity=0.009  Sum_probs=61.1

Q ss_pred             CChhhhcccchhhHhHHHH---HHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          174 VPPNRACLLSCGVSTGVGA---AWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~---l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++++||++++++.|||++   +.+..+.++|++|||+|+ |++|++++|+|+.+|+ +||++.++++|.+++
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~   72 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYL   72 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHH
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHH
Confidence            5899999999999999965   445677889999999997 9999999999999999 899999999988764

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.19  E-value=1.1e-11  Score=95.94  Aligned_cols=67  Identities=25%  Similarity=0.437  Sum_probs=62.3

Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +|+++||+++|...|+|+++ ...++++|++|+|+|+|++|++++++++..|+ +|++++++++|++++
T Consensus         1 ls~eeAA~l~~~~~Ta~~al-~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~   67 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKAL-KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELA   67 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhh
Confidence            57899999999999999975 57889999999999999999999999999999 899999999998765

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.19  E-value=5.8e-12  Score=99.08  Aligned_cols=65  Identities=25%  Similarity=0.294  Sum_probs=60.2

Q ss_pred             hhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       177 ~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +|||++++++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ ++++++++++|.+.+
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l   66 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREML   66 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHH
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeeccccccccc
Confidence            5799999999999999888889999999999987 9999999999999999 999999898887765

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.17  E-value=1.8e-11  Score=95.23  Aligned_cols=66  Identities=33%  Similarity=0.536  Sum_probs=60.1

Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +|+++||++. +++++|+++ +..++++|++|+|+|+|++|++++|+++++|+ +||+++++++|++++
T Consensus         1 VS~e~Aal~e-Pla~a~~a~-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a   66 (170)
T d1e3ja2           1 VSLEEGALLE-PLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVA   66 (170)
T ss_dssp             SCHHHHHTHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCHHHHHHHH-HHHHHHHHH-HHhCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHH
Confidence            4789998875 889999975 67889999999999999999999999999999 999999999998865

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=2.2e-11  Score=94.92  Aligned_cols=68  Identities=25%  Similarity=0.449  Sum_probs=61.5

Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcCC
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE  243 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~~  243 (243)
                      +|+++||++. +++++|++ .+++++++|++|+|+|+|++|++++|+++.+|+.+|++++++++|+++++
T Consensus         1 vS~e~Aal~e-pla~a~~a-~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~   68 (171)
T d1pl8a2           1 VTFEEGALIE-PLSVGIHA-CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK   68 (171)
T ss_dssp             SCHHHHHHHH-HHHHHHHH-HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred             CCHHHHHHHH-HHHHHHHH-HHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHH
Confidence            4789998775 88999997 46789999999999999999999999999999988999999999998763

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.12  E-value=4.8e-11  Score=94.63  Aligned_cols=64  Identities=16%  Similarity=0.060  Sum_probs=57.7

Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEE-CC-CHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF-GL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~-Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      +++++||.+++++.|||+++.+..++++|++++|+ |+ |++|++++|+||.+|+ +||++.+++++
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~   66 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPN   66 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTT
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccc
Confidence            58999999999999999998888999999999997 55 9999999999999999 88888766544

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.11  E-value=4.8e-11  Score=93.96  Aligned_cols=62  Identities=23%  Similarity=0.256  Sum_probs=56.9

Q ss_pred             cccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          180 CLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       180 a~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++.+++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +||+++++++|.+++
T Consensus         8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~   70 (182)
T d1v3va2           8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYL   70 (182)
T ss_dssp             TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHH
Confidence            3567889999999989999999999999998 8999999999999999 999999999887764

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.11  E-value=6e-11  Score=92.56  Aligned_cols=67  Identities=22%  Similarity=0.290  Sum_probs=60.5

Q ss_pred             hhhhcccchhhHhHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          176 PNRACLLSCGVSTGVGAAWRTA-NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~-~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +.++|.++|++.|+|+++.+.. .+++|++|+|+|+|++|++++|+++.+|+.+|++++++++|++++
T Consensus         6 l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~   73 (172)
T d1h2ba2           6 LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLA   73 (172)
T ss_dssp             HHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHH
T ss_pred             HHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHH
Confidence            5688999999999999987655 479999999999999999999999999998899999999998765

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.08  E-value=1.1e-10  Score=90.72  Aligned_cols=68  Identities=29%  Similarity=0.423  Sum_probs=62.6

Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++.+||.++|...|||+++ +..++++|++|+|+|+ |++|++++|+++++|+.+|++++++++|++++
T Consensus         1 l~~~eAA~l~c~~~Ta~~al-~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~   69 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAA   69 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHH
Confidence            57899999999999999975 6789999999999996 99999999999999987999999999998865

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=8.7e-11  Score=92.40  Aligned_cols=68  Identities=13%  Similarity=0.149  Sum_probs=57.6

Q ss_pred             CChhhhcccchhhHhHHHHHH---HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          174 VPPNRACLLSCGVSTGVGAAW---RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~---~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +++.+|+.++++..|||.+++   +......+++|||+|+ |++|++++|+||.+|+ +||+++++++|.+.+
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~   72 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYL   72 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHH
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHH
Confidence            578999999999999997653   2333455679999988 9999999999999999 899999999987754

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.03  E-value=2.3e-10  Score=91.26  Aligned_cols=65  Identities=38%  Similarity=0.420  Sum_probs=59.2

Q ss_pred             hhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       177 ~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ++.+.+...+.|+|+++ +.+++++|++|||+|+|++|++++++++.+|+.+|++++++++|++++
T Consensus         2 ~d~~~l~d~~~ta~~a~-~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a   66 (195)
T d1kola2           2 RDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHA   66 (195)
T ss_dssp             HHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred             chHHhcccHHHHHHHHH-HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhh
Confidence            45667788999999985 679999999999999999999999999999999999999999998875

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.85  E-value=1e-09  Score=86.58  Aligned_cols=66  Identities=20%  Similarity=0.257  Sum_probs=54.5

Q ss_pred             CChhhhcccchhhHhHHHHHHHhcCCCCC--CEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          174 VPPNRACLLSCGVSTGVGAAWRTANVEVG--STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g--~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      +|+.+.+ +.++..|||.++.+..++++|  ++|||+|+ |++|++++|+||.+|+.+|+.+++++++..
T Consensus         2 ~~~~~ga-lg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~   70 (187)
T d1vj1a2           2 LSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCL   70 (187)
T ss_dssp             GGGGGTT-TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHH
T ss_pred             ccHHHHH-hhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHh
Confidence            4455543 567899999999999999988  88999997 999999999999999977777777766543

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=98.68  E-value=6.7e-09  Score=80.57  Aligned_cols=57  Identities=12%  Similarity=0.006  Sum_probs=46.9

Q ss_pred             hhHhHHH---HHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          185 GVSTGVG---AAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       185 ~~~ta~~---~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +..|||.   ++.+.....++++|||+|+ |++|++++|+||.+|+ +||++.++++|.+++
T Consensus         4 aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~   64 (167)
T d1tt7a2           4 AGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYL   64 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHH
T ss_pred             hHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHH
Confidence            4456664   3445556677889999997 9999999999999999 899999999888765

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.60  E-value=0.0012  Score=50.70  Aligned_cols=41  Identities=29%  Similarity=0.417  Sum_probs=37.1

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +..+|+|+|+|-+|+.++..|+.+|+ .|.++|.+.++++.+
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l   68 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQV   68 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHH
Confidence            45789999999999999999999999 999999998887654

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.58  E-value=0.0017  Score=48.93  Aligned_cols=48  Identities=13%  Similarity=0.131  Sum_probs=41.6

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ++...+..++++|+|+|+|+.+.+++..++..|+.++.++.|+.+|.+
T Consensus         8 ~l~~~~~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~   55 (167)
T d1npya1           8 LIEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQ   55 (167)
T ss_dssp             HHHHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHH
T ss_pred             HHHHcCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHH
Confidence            445666678899999999999999999999999988999999988754

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.58  E-value=0.0031  Score=48.37  Aligned_cols=44  Identities=18%  Similarity=0.185  Sum_probs=39.2

Q ss_pred             cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          197 ANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       197 ~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      ...-+|++++|.|+ |++|..++..+...|+ +|+.++|+.++.+.
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~   62 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQA   62 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHH
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHH
Confidence            44568999999998 9999999999999999 99999999988654

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.54  E-value=0.0013  Score=49.73  Aligned_cols=41  Identities=29%  Similarity=0.291  Sum_probs=37.5

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +..+|+|+|+|-.|+.+++.|+.+|+ .|.++|.+.++++.+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l   71 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYL   71 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHH
Confidence            46789999999999999999999999 999999999888653

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.0051  Score=46.20  Aligned_cols=47  Identities=13%  Similarity=0.091  Sum_probs=39.1

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      +....-..+|++|||+|+|+.+.+++..+..+|+ +++++.|+.+|.+
T Consensus         9 l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~nRt~~ka~   55 (170)
T d1nyta1           9 LERLSFIRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAE   55 (170)
T ss_dssp             HHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHH
T ss_pred             HHHcCCCCCCCEEEEECCcHHHHHHHHHhcccce-EEEeccchHHHHH
Confidence            4333335689999999999999999998889999 8999999987754

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.0028  Score=42.87  Aligned_cols=36  Identities=31%  Similarity=0.316  Sum_probs=32.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      .|++|+|+|.|..|+++++++...|+ +|++.+.+..
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~~~   39 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRMT   39 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESSSS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCCcC
Confidence            68899999999999999999999999 8999997553

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.80  E-value=0.016  Score=40.53  Aligned_cols=44  Identities=20%  Similarity=0.132  Sum_probs=38.2

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      +.+.....++++|+|+|+|.+|+-.++.++.+|. +|..+.+.+.
T Consensus        13 ~~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~-~vt~i~~~~~   56 (121)
T d1mo9a2          13 LVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGR-RTVMLVRTEP   56 (121)
T ss_dssp             HHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCT
T ss_pred             HHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcch-hheEeeccch
Confidence            4556677889999999999999999999999999 8999988754

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=95.68  E-value=0.015  Score=43.20  Aligned_cols=47  Identities=21%  Similarity=0.222  Sum_probs=39.6

Q ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       194 ~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      .....--.+++|||+|+|.+|.++++.+...|+..++++.|+.+|.+
T Consensus        16 ~~~~~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~   62 (159)
T d1gpja2          16 ERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAV   62 (159)
T ss_dssp             HHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHH
T ss_pred             HHHhCCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHH
Confidence            34444568899999999999999999999999988999999877754

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=95.48  E-value=0.0083  Score=48.75  Aligned_cols=40  Identities=15%  Similarity=0.107  Sum_probs=36.2

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      -.|+++||.|+ +++|.+.+..+...|+ +|+.+++++++++
T Consensus        23 l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~   63 (294)
T d1w6ua_          23 FQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLK   63 (294)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHH
Confidence            57899999998 8999999999999999 9999999987764

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.33  E-value=0.012  Score=44.67  Aligned_cols=38  Identities=26%  Similarity=0.299  Sum_probs=33.9

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       198 ~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ....+++|+|+|+|+.|+.++..+..+|. +|+++...+
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~   76 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHS   76 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccC
Confidence            34567899999999999999999999999 999998765

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.28  E-value=0.015  Score=40.71  Aligned_cols=37  Identities=27%  Similarity=0.481  Sum_probs=32.3

Q ss_pred             CCC-CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          200 EVG-STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       200 ~~g-~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      .++ .+|.|+|+|.+|.+.++.|+.+|+ ++++++.+++
T Consensus         8 ~~~~~kigIlGgGQL~rMla~aA~~lG~-~v~v~d~~~~   45 (111)
T d1kjqa2           8 RPAATRVMLLGSGELGKEVAIECQRLGV-EVIAVDRYAD   45 (111)
T ss_dssp             STTCCEEEEESCSHHHHHHHHHHHTTTC-EEEEEESSTT
T ss_pred             CCCCCEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcCCCC
Confidence            444 469999999999999999999999 9999997754

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.23  E-value=0.027  Score=39.74  Aligned_cols=43  Identities=23%  Similarity=0.358  Sum_probs=36.2

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      +........+++|+|+|+|.+|+-+++.+..+|. +|.++.+.+
T Consensus        21 i~~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~-~Vtlie~~~   63 (123)
T d1nhpa2          21 LKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILD   63 (123)
T ss_dssp             HHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             HHHHhhccCCCEEEEECChHHHHHHHHHhhccce-EEEEEEecC
Confidence            4444555678899999999999999999999999 899998765

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.22  E-value=0.021  Score=40.09  Aligned_cols=39  Identities=15%  Similarity=0.117  Sum_probs=34.3

Q ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       197 ~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ..++..++|+|+|+|.+|+-++..+..+|. +|.++.+.+
T Consensus        17 ~~l~~p~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~   55 (117)
T d1onfa2          17 FNIKESKKIGIVGSGYIAVELINVIKRLGI-DSYIFARGN   55 (117)
T ss_dssp             TTCCCCSEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSS
T ss_pred             hccCCCCEEEEECCchHHHHHHHHHHhccc-cceeeehhc
Confidence            345567899999999999999999999999 999999765

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.20  E-value=0.009  Score=39.15  Aligned_cols=34  Identities=21%  Similarity=0.365  Sum_probs=30.8

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       203 ~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      ++|.|+|+|.+|.+.++.++.+|+ ++++++.+++
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~-~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGI-AVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTE-EEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-EEEEEcCCCC
Confidence            579999999999999999999999 9999987654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.90  E-value=0.023  Score=39.51  Aligned_cols=37  Identities=24%  Similarity=0.407  Sum_probs=32.7

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      +..++++|+|+|.+|+-+++.+..+|. +|.++.+.+.
T Consensus        20 ~~p~~v~IiGgG~ig~E~A~~l~~~G~-~Vtlve~~~~   56 (117)
T d1ebda2          20 EVPKSLVVIGGGYIGIELGTAYANFGT-KVTILEGAGE   56 (117)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             hcCCeEEEECCCccceeeeeeeccccc-EEEEEEecce
Confidence            445899999999999999999999999 8999987764

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=94.73  E-value=0.021  Score=45.57  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=33.2

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       198 ~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      .....++|+|+|+|+.|+.++..+...|. +|++++.++
T Consensus        26 ~~~~pkkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~~   63 (370)
T d2iida1          26 ATSNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASE   63 (370)
T ss_dssp             CCSSCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            45667899999999999999999988999 999998754

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.05  Score=40.52  Aligned_cols=49  Identities=24%  Similarity=0.387  Sum_probs=40.6

Q ss_pred             HHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140          190 VGAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (243)
Q Consensus       190 ~~~l~~~~~-~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~  239 (243)
                      +.++.+..+ .-.|++++|+|-|-+|...++.++.+|+ +|++++..+-+.
T Consensus        11 ~~~~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~-~V~v~e~dp~~a   60 (163)
T d1li4a1          11 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGA-RVIITEIDPINA   60 (163)
T ss_dssp             HHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHH
T ss_pred             HHHHHHHhCceecCCEEEEeccccccHHHHHHHHhCCC-eeEeeecccchh
Confidence            334444444 5689999999999999999999999999 999999988653

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.57  E-value=0.03  Score=43.66  Aligned_cols=38  Identities=21%  Similarity=0.211  Sum_probs=33.6

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       198 ~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ..+.+++|+|+|+|+.|+.++..++.+|. +|+++..++
T Consensus        45 ~~~~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~~~   82 (233)
T d1djqa3          45 QTKNKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAE   82 (233)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             cccCCceEEEEcccHHHHHHHHHHHHhcc-ceeeEeecc
Confidence            34678999999999999999999999999 899998665

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=94.49  E-value=0.038  Score=41.33  Aligned_cols=41  Identities=17%  Similarity=0.126  Sum_probs=34.5

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ..++++|+|+|+|+.+.+++..+...+. +++++.|+.+|.+
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~~~~-~i~I~nR~~~~a~   55 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQAQQ-NIVLANRTFSKTK   55 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTTC-EEEEEESSHHHHH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcccCc-eeeeccchHHHHH
Confidence            4588999999999999998887776554 9999999987755

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.45  E-value=0.038  Score=38.88  Aligned_cols=38  Identities=32%  Similarity=0.441  Sum_probs=33.9

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      +.++++++|+|+|.+|+-++..++.+|. +|..+.+++.
T Consensus        27 ~~~~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~~   64 (121)
T d1d7ya2          27 LRPQSRLLIVGGGVIGLELAATARTAGV-HVSLVETQPR   64 (121)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             hhcCCeEEEECcchhHHHHHHHhhcccc-eEEEEeeccc
Confidence            4677999999999999999999999999 8999987764

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.41  E-value=0.038  Score=38.89  Aligned_cols=35  Identities=23%  Similarity=0.354  Sum_probs=31.9

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ..++++|+|+|.+|+-.++++..+|. +|.++.+.+
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~~~   56 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEFQP   56 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCCeEEEECCCchHHHHHHHHHhhCc-ceeEEEecc
Confidence            45899999999999999999999999 999998765

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=94.34  E-value=0.036  Score=42.75  Aligned_cols=41  Identities=32%  Similarity=0.423  Sum_probs=36.9

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      --.|++|+|.|.|.+|..+++++...|+ +|++.+.+.+++.
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Ga-kvvv~d~d~~~~~   64 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVA   64 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEecchHHHHH
Confidence            3588999999999999999999999999 9999998877654

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.27  E-value=0.04  Score=38.52  Aligned_cols=36  Identities=22%  Similarity=0.362  Sum_probs=31.9

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      +..++++|+|+|.+|+-.++....+|. +|..+.+++
T Consensus        20 ~~p~~i~IiG~G~ig~E~A~~l~~~G~-~Vtiv~~~~   55 (119)
T d3lada2          20 NVPGKLGVIGAGVIGLELGSVWARLGA-EVTVLEAMD   55 (119)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             cCCCeEEEECCChHHHHHHHHHHHcCC-ceEEEEeec
Confidence            456899999999999999999999999 888888665

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.24  E-value=0.045  Score=38.06  Aligned_cols=36  Identities=19%  Similarity=0.294  Sum_probs=32.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      ..++++|+|+|.+|+-+++.++.+|. +|.++.+.+.
T Consensus        20 ~p~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~~~   55 (116)
T d1gesa2          20 LPERVAVVGAGYIGVELGGVINGLGA-KTHLFEMFDA   55 (116)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             CCCEEEEECCChhhHHHHHHhhcccc-EEEEEeecch
Confidence            45789999999999999999999999 9999988763

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.12  E-value=0.052  Score=38.73  Aligned_cols=38  Identities=26%  Similarity=0.348  Sum_probs=34.2

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      +.++++|+|+|+|.+|+-++..++.+|. +|.++.+.+.
T Consensus        32 ~~~~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~~~   69 (133)
T d1q1ra2          32 LIADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAAR   69 (133)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             hccCCEEEEECCchHHHHHHHHHHhhCc-ceeeeeeccc
Confidence            4678999999999999999999999999 8999998764

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.05  E-value=0.039  Score=38.17  Aligned_cols=36  Identities=19%  Similarity=0.095  Sum_probs=31.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      -.|++|||+|+|.+|..-++.+...|+ +|++++...
T Consensus        10 l~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~~~   45 (113)
T d1pjqa1          10 LRDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTF   45 (113)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSC
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            368999999999999999999999999 888876543

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.01  E-value=0.046  Score=37.86  Aligned_cols=35  Identities=29%  Similarity=0.396  Sum_probs=31.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      .+++++|+|+|.+|+-+++.++.+|. +|.++.+.+
T Consensus        20 ~p~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~~~   54 (115)
T d1lvla2          20 LPQHLVVVGGGYIGLELGIAYRKLGA-QVSVVEARE   54 (115)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHhhccc-ceEEEeeec
Confidence            45899999999999999999999999 899998765

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.76  E-value=0.042  Score=38.69  Aligned_cols=34  Identities=12%  Similarity=0.039  Sum_probs=30.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      ..++++|+|+|.+|+-.+++++.+|. +|..+.++
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~   52 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGL-DVTVMVRS   52 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCC-eEEEEEec
Confidence            45789999999999999999999999 78888764

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.65  E-value=0.064  Score=37.71  Aligned_cols=34  Identities=21%  Similarity=0.137  Sum_probs=31.5

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       202 g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      .++++|+|+|.+|+-++..++.+|. +|..+.+++
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGS-KTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCc-EEEEEeecc
Confidence            4799999999999999999999999 899999875

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.54  E-value=0.043  Score=38.58  Aligned_cols=38  Identities=29%  Similarity=0.412  Sum_probs=33.9

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      +..++++|+|+|.+|+-.+++...+|. +|.++.+++.-
T Consensus        23 ~~p~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~~~~~   60 (123)
T d1dxla2          23 EIPKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEFASEI   60 (123)
T ss_dssp             SCCSEEEESCCSHHHHHHHHHHHHHTC-EEEEECSSSSS
T ss_pred             ccCCeEEEEccchHHHHHHHHHHhcCC-eEEEEEEcccc
Confidence            456899999999999999999999999 99999887754

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.44  E-value=0.067  Score=37.80  Aligned_cols=36  Identities=31%  Similarity=0.449  Sum_probs=32.5

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      +.+++++|+|+|.+|+-+++..+.+|. +|..+.+.+
T Consensus        24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~~~   59 (125)
T d1ojta2          24 EVPGKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEMMD   59 (125)
T ss_dssp             CCCSEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             ccCCeEEEECCCHHHHHHHHHhhcCCC-EEEEEEeec
Confidence            556899999999999999999999999 899998765

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=93.39  E-value=0.049  Score=41.83  Aligned_cols=37  Identities=30%  Similarity=0.337  Sum_probs=33.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      .|++|.|+|.|.+|..++++++.+|+ +|++.++...+
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~   80 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPYPMK   80 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCS
T ss_pred             cceeeeeeecccccccccccccccce-eeeccCCccch
Confidence            57899999999999999999999999 99999976543

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.37  E-value=0.054  Score=40.94  Aligned_cols=38  Identities=29%  Similarity=0.458  Sum_probs=34.1

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      -.|++|.|+|.|.+|..++++++.+|+ +|++.++...+
T Consensus        40 l~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~~~   77 (181)
T d1qp8a1          40 IQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPKE   77 (181)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSCCC
T ss_pred             ccCceEEEeccccccccceeeeecccc-ccccccccccc
Confidence            358899999999999999999999999 99999987643

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=93.13  E-value=0.065  Score=41.09  Aligned_cols=36  Identities=25%  Similarity=0.368  Sum_probs=32.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      .|++|.|+|-|.+|..++++++.+|+ +|++.++...
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~-~V~~~d~~~~   77 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRN   77 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             cCCeEEEecccccchhHHHhHhhhcc-cccccCcccc
Confidence            47999999999999999999999999 9999986543

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.98  E-value=0.046  Score=39.71  Aligned_cols=34  Identities=18%  Similarity=0.242  Sum_probs=30.6

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  234 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~  234 (243)
                      -.|++|||+|+|.+|.--+..+...|+ +|++++.
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVvap   44 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSP   44 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            478999999999999999999999999 8888853

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=92.94  E-value=0.17  Score=39.65  Aligned_cols=41  Identities=24%  Similarity=0.336  Sum_probs=36.7

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      -..|++|+|.|.|.+|..+++++..+|+ ++++++.+..+++
T Consensus        36 ~l~g~~v~IqG~GnVG~~~a~~L~~~Ga-kvv~~d~~~~~~~   76 (230)
T d1leha1          36 SLEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVS   76 (230)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEeecccHHHHH
Confidence            4579999999999999999999999999 9999998876654

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=92.57  E-value=0.15  Score=40.27  Aligned_cols=37  Identities=35%  Similarity=0.394  Sum_probs=32.8

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       198 ~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      .--.|++|+|.|.|.+|..+++++..+|+ +|++++.+
T Consensus        27 ~~l~g~~v~IqGfGnVG~~~a~~L~~~Ga-kvv~vsD~   63 (242)
T d1v9la1          27 GGIEGKTVAIQGMGNVGRWTAYWLEKMGA-KVIAVSDI   63 (242)
T ss_dssp             SCCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEECS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEeecc
Confidence            44689999999999999999999999999 88887744

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=92.56  E-value=0.087  Score=40.17  Aligned_cols=36  Identities=36%  Similarity=0.418  Sum_probs=32.9

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      -.|++|.|+|.|.+|..++++++.+|+ +|+..++..
T Consensus        47 L~gktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~   82 (193)
T d1mx3a1          47 IRGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYL   82 (193)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTS
T ss_pred             eeCceEEEeccccccccceeeeecccc-ceeeccCcc
Confidence            468899999999999999999999999 999998754

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.54  E-value=0.13  Score=37.57  Aligned_cols=38  Identities=26%  Similarity=0.402  Sum_probs=32.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      .-+++|+|+|+|.+|+-++..+..+|+..|+++.+.+.
T Consensus        43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~   80 (153)
T d1gtea3          43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF   80 (153)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCCh
Confidence            34678999999999999999999999977888877654

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.24  E-value=0.1  Score=36.41  Aligned_cols=36  Identities=25%  Similarity=0.282  Sum_probs=31.9

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      +.+++++|+|+|.+|+-+++.+..+|. +|.++.+++
T Consensus        30 ~~~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~   65 (122)
T d1xhca2          30 ENSGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRGA   65 (122)
T ss_dssp             HHHSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             hcCCcEEEECCcHHHHHHHHHhhcccc-eEEEEeccc
Confidence            345899999999999999999999999 899998765

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.02  E-value=0.077  Score=40.95  Aligned_cols=49  Identities=22%  Similarity=0.314  Sum_probs=39.2

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCchhhhcC
Q 026140          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIG  242 (243)
Q Consensus       193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~-~~vi~~~~~~~~~~~~  242 (243)
                      +.+..++++|++||-+|+|. |..++.+++..|. .+|++++.+++..+.+
T Consensus        67 ~l~~l~l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a  116 (213)
T d1dl5a1          67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIA  116 (213)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHH
T ss_pred             HHHhhhccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHh
Confidence            45788999999999999765 7778888887752 3799999988776654

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.62  E-value=0.21  Score=37.57  Aligned_cols=38  Identities=34%  Similarity=0.452  Sum_probs=33.6

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      ..|+++.|+|.|.+|..++++++.+|. +|++.++...+
T Consensus        42 l~~k~vgiiG~G~IG~~va~~~~~fg~-~v~~~d~~~~~   79 (184)
T d1ygya1          42 IFGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPYVSP   79 (184)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCH
T ss_pred             ccceeeeeccccchhHHHHHHhhhccc-eEEeecCCCCh
Confidence            457899999999999999999999999 99999976543

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=90.37  E-value=0.52  Score=34.69  Aligned_cols=46  Identities=26%  Similarity=0.364  Sum_probs=39.2

Q ss_pred             HHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140          192 AAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (243)
Q Consensus       192 ~l~~~~~-~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~  238 (243)
                      ++.+..+ .-.|++++|.|=|-+|.-.++-++.+|+ +|+++..++-+
T Consensus        12 ~i~r~t~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga-~V~V~E~DPi~   58 (163)
T d1v8ba1          12 GLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPIC   58 (163)
T ss_dssp             HHHHHHCCCCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHH
T ss_pred             HHHHHhCceecCCEEEEecccccchhHHHHHHhCCC-EEEEEecCchh
Confidence            3444444 5789999999999999999999999999 99999988855

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=89.54  E-value=0.34  Score=38.45  Aligned_cols=35  Identities=26%  Similarity=0.398  Sum_probs=31.3

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  234 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~  234 (243)
                      --.|++|+|.|.|.+|..+++++..+|+ +|+++.-
T Consensus        33 ~l~g~~v~IQGfGnVG~~~a~~L~e~Ga-kvvavsD   67 (255)
T d1bgva1          33 TLVGKTVALAGFGNVAWGAAKKLAELGA-KAVTLSG   67 (255)
T ss_dssp             CSTTCEEEECCSSHHHHHHHHHHHHHTC-EEEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence            4578999999999999999999999999 8887753

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=89.39  E-value=0.27  Score=37.21  Aligned_cols=35  Identities=34%  Similarity=0.357  Sum_probs=31.8

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      .|+++.|+|.|.+|...+++++.+|. +|+..++..
T Consensus        46 ~g~tvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~   80 (191)
T d1gdha1          46 DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHR   80 (191)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSC
T ss_pred             cccceEEeecccchHHHHHHHHhhcc-ccccccccc
Confidence            37999999999999999999999999 899988654

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=89.37  E-value=0.25  Score=38.56  Aligned_cols=36  Identities=28%  Similarity=0.382  Sum_probs=32.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ...+|+|+|+|++|..++..+..+|.++++.+|...
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            457899999999999999999999999999998654

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.02  E-value=0.25  Score=40.04  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=31.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      ..|++|+|.|-|.+|..+++++..+|+ +|++++.+
T Consensus        34 L~gktvaIqGfGnVG~~~A~~L~e~Ga-kvv~vsD~   68 (293)
T d1hwxa1          34 FGDKTFAVQGFGNVGLHSMRYLHRFGA-KCVAVGES   68 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEEET
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEcc
Confidence            468999999999999999999999999 89888643

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.88  E-value=0.31  Score=36.57  Aligned_cols=37  Identities=24%  Similarity=0.292  Sum_probs=33.0

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      ..+++|.|+|.|.+|..++++++.+|+ +|+..++...
T Consensus        42 l~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~   78 (188)
T d1sc6a1          42 ARGKKLGIIGYGHIGTQLGILAESLGM-YVYFYDIENK   78 (188)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             ccceEEEEeecccchhhhhhhcccccc-eEeecccccc
Confidence            357899999999999999999999999 9999987543

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.80  E-value=0.14  Score=39.59  Aligned_cols=55  Identities=20%  Similarity=0.280  Sum_probs=39.6

Q ss_pred             cchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          182 LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       182 ~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      +..+...|.  +.+..++++|++||.+|+| .|..++.+++..|. +|++++++++-.+
T Consensus        61 is~P~~~a~--ml~~L~l~~g~~VLeIGsG-sGY~taila~l~g~-~V~~ie~~~~l~~  115 (215)
T d1jg1a_          61 VSAPHMVAI--MLEIANLKPGMNILEVGTG-SGWNAALISEIVKT-DVYTIERIPELVE  115 (215)
T ss_dssp             ECCHHHHHH--HHHHHTCCTTCCEEEECCT-TSHHHHHHHHHHCS-CEEEEESCHHHHH
T ss_pred             hhhhhhHHH--HHHhhccCccceEEEecCC-CChhHHHHHHhhCc-eeEEEeccHHHHH
Confidence            333544453  4577889999999999864 46677777777786 7999998875444

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.56  E-value=0.18  Score=40.67  Aligned_cols=49  Identities=14%  Similarity=0.236  Sum_probs=39.5

Q ss_pred             HHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       192 ~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      .+.+.+++++|++||=+|.| .|..++.+|+..|+ +|++++.+++..+.+
T Consensus        53 ~~~~~l~l~~G~~VLDiGCG-~G~~a~~~a~~~g~-~v~git~s~~Q~~~a  101 (285)
T d1kpga_          53 LALGKLGLQPGMTLLDVGCG-WGATMMRAVEKYDV-NVVGLTLSKNQANHV  101 (285)
T ss_dssp             HHHTTTTCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHH
T ss_pred             HHHHHcCCCCCCEEEEecCc-chHHHHHHHhcCCc-ceEEEeccHHHHHHH
Confidence            35678899999999999853 35666788888999 999999998776643

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=88.26  E-value=0.42  Score=32.64  Aligned_cols=36  Identities=17%  Similarity=0.051  Sum_probs=28.3

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLC---GATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~---g~~~vi~~~~~~  236 (243)
                      +..++++|+|+|.+|+-.++++..+   |. +|..+.+.+
T Consensus        16 ~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~-~Vtli~~~~   54 (117)
T d1feca2          16 EAPKRALCVGGGYISIEFAGIFNAYKARGG-QVDLAYRGD   54 (117)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHHHSCTTC-EEEEEESSS
T ss_pred             ccCCeEEEECCChHHHHHHHHhHhhccccc-ccceecccc
Confidence            3458999999999999888776543   77 888888765

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=87.73  E-value=0.36  Score=36.20  Aligned_cols=36  Identities=22%  Similarity=0.102  Sum_probs=32.5

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ..+.++.|+|.|.+|...++.++.+|. +|+..++..
T Consensus        42 l~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~   77 (188)
T d2naca1          42 LEAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHR   77 (188)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSC
T ss_pred             ccccceeeccccccchhhhhhhhccCc-eEEEEeecc
Confidence            468899999999999999999999999 899998753

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=87.42  E-value=0.6  Score=33.35  Aligned_cols=46  Identities=20%  Similarity=0.192  Sum_probs=37.4

Q ss_pred             hHHHHHHHhcCCCCCCEEEEE--CCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          188 TGVGAAWRTANVEVGSTVVIF--GLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       188 ta~~~l~~~~~~~~g~~VlI~--GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      |....+  .....+++.++|+  |+|.+|+-+++.+..+|. +|..+.+.+
T Consensus        27 t~~d~l--~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~-~Vtlv~~~~   74 (156)
T d1djqa2          27 TPEQVM--DGKKKIGKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGVH   74 (156)
T ss_dssp             CHHHHH--HTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             CHHHHh--cCccccCCceEEEecCCChHHHHHHHHHHHcCC-eEEEEecCC
Confidence            555532  4667889999888  778999999999999999 899998764

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=87.05  E-value=0.26  Score=38.94  Aligned_cols=49  Identities=12%  Similarity=0.109  Sum_probs=35.6

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCchhhhcC
Q 026140          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIG  242 (243)
Q Consensus       193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~-~~vi~~~~~~~~~~~~  242 (243)
                      +...+++++|++||=.|+|+ |.++..+|++.+. .+|++++.+++..+.|
T Consensus        77 Ii~~l~i~pG~rVLEiG~Gs-G~lt~~la~~v~~~g~V~~vD~~e~~~~~A  126 (250)
T d1yb2a1          77 IIMRCGLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKA  126 (250)
T ss_dssp             ----CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHH
T ss_pred             HHHHcCCCCcCEEEEeeeeC-cHHHHHHHHHhCCCcEEEEEECCHHHHHHH
Confidence            44678899999999998754 5666677877643 3899999999877654

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.98  E-value=0.44  Score=36.79  Aligned_cols=43  Identities=30%  Similarity=0.478  Sum_probs=33.0

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCchhhhc
Q 026140          198 NVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEI  241 (243)
Q Consensus       198 ~~~~g~~VlI~GaG~vG~~~v~la~~~g-~~~vi~~~~~~~~~~~  241 (243)
                      .+++|++||-+|.| .|..++.+|+..| ..+|++++.+++-.+.
T Consensus        73 ~l~~g~~VLdiG~G-sGy~ta~la~l~~~~g~V~~ie~~~~l~~~  116 (224)
T d1i1na_          73 QLHEGAKALDVGSG-SGILTACFARMVGCTGKVIGIDHIKELVDD  116 (224)
T ss_dssp             TSCTTCEEEEETCT-TSHHHHHHHHHHCTTCEEEEEESCHHHHHH
T ss_pred             ccCCCCeEEEecCC-CCHHHHHHHHHhCCCceEEEEcCCHHHHHH
Confidence            68999999999864 3677777787765 3389999988866554

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=86.85  E-value=1.2  Score=34.38  Aligned_cols=46  Identities=22%  Similarity=0.223  Sum_probs=36.8

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140          190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (243)
Q Consensus       190 ~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~  235 (243)
                      +.++.....--...++++.|+|..|...+++....+.++++.+|+.
T Consensus        14 l~a~~~~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          14 LNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             HHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             HHHHHHhCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            3344444555667899999999999999999998899899999976

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=86.84  E-value=0.61  Score=31.82  Aligned_cols=37  Identities=16%  Similarity=0.003  Sum_probs=28.6

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCC--eEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARLCGAT--RIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~--~vi~~~~~~  236 (243)
                      +.+++++|+|+|.+|+-++..+..++..  .|..+.+.+
T Consensus        18 ~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          18 EPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             hcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            4568999999999999988777766532  688887654

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.42  E-value=0.81  Score=35.59  Aligned_cols=35  Identities=23%  Similarity=0.317  Sum_probs=29.5

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcC
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGA-RLCGATRIIGVDV  234 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la-~~~g~~~vi~~~~  234 (243)
                      -..|.+|+|.|.|.+|..+++.+ +..|+ ++++++.
T Consensus        28 ~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga-~vv~vsd   63 (234)
T d1b26a1          28 DPKKATVAVQGFGNVGQFAALLISQELGS-KVVAVSD   63 (234)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHHCC-EEEEEEE
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCC-ceEEeec
Confidence            45789999999999999988876 57899 8887763

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=85.80  E-value=0.49  Score=31.47  Aligned_cols=37  Identities=24%  Similarity=0.327  Sum_probs=31.5

Q ss_pred             CCCCCEEEEECCCHHHHHH-HHHHHHcCCCeEEEEcCCc
Q 026140          199 VEVGSTVVIFGLGSIGLAV-AEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~-v~la~~~g~~~vi~~~~~~  236 (243)
                      .+..+++.++|.|++|+.+ +++++..|+ .|.+.|...
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~   42 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIAD   42 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCC
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCC
Confidence            4567899999999999876 788889999 999999764

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=85.72  E-value=0.38  Score=38.61  Aligned_cols=31  Identities=45%  Similarity=0.592  Sum_probs=27.6

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       205 VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      |+|+|+|..|+.++.-+...|+ +|+++...+
T Consensus        26 VvVIG~G~aGl~aA~~la~~G~-~V~llEk~~   56 (322)
T d1d4ca2          26 VVIIGSGGAGLAAAVSARDAGA-KVILLEKEP   56 (322)
T ss_dssp             EEEECSSHHHHHHHHHHHTTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            8999999999999888888999 899998654

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=85.63  E-value=0.95  Score=33.03  Aligned_cols=41  Identities=24%  Similarity=0.385  Sum_probs=33.3

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCchhh
Q 026140          199 VEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKF  239 (243)
Q Consensus       199 ~~~g~~VlI~GaG~vG~~~v~la~~~g-~~~vi~~~~~~~~~  239 (243)
                      ..+..+|.|+|+|.+|..++..+...| +.+++.+|.++++.
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a   58 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKL   58 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHH
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchh
Confidence            345679999999999999888888876 46799999887653

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=85.59  E-value=0.37  Score=37.96  Aligned_cols=32  Identities=25%  Similarity=0.308  Sum_probs=26.2

Q ss_pred             EEEEECCCHHHHHHHH-HHHHcCCCeEEEEcCCc
Q 026140          204 TVVIFGLGSIGLAVAE-GARLCGATRIIGVDVIS  236 (243)
Q Consensus       204 ~VlI~GaG~vG~~~v~-la~~~g~~~vi~~~~~~  236 (243)
                      -|+|+|+|+.|+.++. +|+..|. +|.+++.++
T Consensus        35 DViVIGaGpaGL~aA~~LA~~~G~-~V~vlE~~~   67 (278)
T d1rp0a1          35 DVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQSV   67 (278)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTS-CEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHccCC-eEEEEecCC
Confidence            3899999999998765 4565799 899999765

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=85.58  E-value=0.4  Score=37.16  Aligned_cols=53  Identities=17%  Similarity=0.221  Sum_probs=38.3

Q ss_pred             hhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          185 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       185 ~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      +...+.  +.+...+++|++||-+|.| .|..++.+++. +. +|++++.+++-.+.+
T Consensus        56 p~~~a~--ml~~L~l~~g~~VLdIG~G-sGy~ta~La~l-~~-~V~aiE~~~~~~~~A  108 (224)
T d1vbfa_          56 LNLGIF--MLDELDLHKGQKVLEIGTG-IGYYTALIAEI-VD-KVVSVEINEKMYNYA  108 (224)
T ss_dssp             HHHHHH--HHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEEESCHHHHHHH
T ss_pred             hhhHHH--HHHHhhhcccceEEEecCC-CCHHHHHHHHH-hc-ccccccccHHHHHHH
Confidence            444443  4577889999999999875 45666667765 45 899999888765543

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.38  E-value=0.41  Score=38.59  Aligned_cols=43  Identities=23%  Similarity=0.407  Sum_probs=30.4

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (243)
Q Consensus       193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~  237 (243)
                      +.+.....+|++||-+|.| .|.++..+|+ .|+.+|++++.++.
T Consensus        27 i~~~~~~~~~~~VLDiGcG-~G~lsl~aa~-~Ga~~V~aid~s~~   69 (311)
T d2fyta1          27 IYQNPHIFKDKVVLDVGCG-TGILSMFAAK-AGAKKVLGVDQSEI   69 (311)
T ss_dssp             HHHCGGGTTTCEEEEETCT-TSHHHHHHHH-TTCSEEEEEESSTH
T ss_pred             HHhccccCCcCEEEEECCC-CCHHHHHHHH-cCCCEEEEEeCHHH
Confidence            4344456789999999875 4445555554 58779999998764

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=85.29  E-value=0.62  Score=36.95  Aligned_cols=49  Identities=22%  Similarity=0.288  Sum_probs=39.7

Q ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCchhhhcC
Q 026140          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIG  242 (243)
Q Consensus       193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g-~~~vi~~~~~~~~~~~~  242 (243)
                      +...+++++|++||=.|+|+ |.++..+|+..+ -.+|++++.+++..+.+
T Consensus        95 Ii~~l~i~pG~~VLDiG~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A  144 (266)
T d1o54a_          95 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLA  144 (266)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHH
T ss_pred             HHHhhCCCCCCEEEECCCCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Confidence            56789999999999998765 667778888875 23899999999887765

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.92  E-value=0.66  Score=35.61  Aligned_cols=38  Identities=24%  Similarity=0.163  Sum_probs=32.9

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHH--------------------cCCCeEEEEcCCch
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGARL--------------------CGATRIIGVDVISE  237 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~~--------------------~g~~~vi~~~~~~~  237 (243)
                      ..|++|+|+|+|.+++-++.++..                    .|+++|..+.|...
T Consensus        37 ~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          37 LSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             TTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             ccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            458999999999999999988876                    59999999988753

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.29  E-value=0.52  Score=39.25  Aligned_cols=31  Identities=32%  Similarity=0.416  Sum_probs=24.4

Q ss_pred             EEEECCCHHHHHHHHHHHH------cCCCeEEEEcCCc
Q 026140          205 VVIFGLGSIGLAVAEGARL------CGATRIIGVDVIS  236 (243)
Q Consensus       205 VlI~GaG~vG~~~v~la~~------~g~~~vi~~~~~~  236 (243)
                      |+|+|+|+.|+.++..+..      .|+ +|.++.+.+
T Consensus        35 ViIVGgGPAGlsaA~~LA~l~~~~~~Gl-~VlllEK~~   71 (380)
T d2gmha1          35 VVIVGAGPAGLSAATRLKQLAAQHEKDL-RVCLVEKAA   71 (380)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHHHTTCCC-CEEEECSSS
T ss_pred             EEEECCCHHHHHHHHHHHhhhhhhcCCC-EEEEEcCCC
Confidence            7888999999876554433      799 899999765

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.72  E-value=0.47  Score=37.91  Aligned_cols=50  Identities=14%  Similarity=0.242  Sum_probs=38.7

Q ss_pred             HHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140          191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (243)
Q Consensus       191 ~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~  242 (243)
                      ..+.+..++++|++||=+|.|. |..+..+++..|+ +|++++.+++..+.+
T Consensus        42 ~~~~~~l~l~~g~~VLDiGCG~-G~~a~~~a~~~g~-~v~gi~ls~~q~~~a   91 (280)
T d2fk8a1          42 DLNLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARC   91 (280)
T ss_dssp             HHHHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHH
T ss_pred             HHHHHHcCCCCCCEEEEecCCc-hHHHHHHHHhCce-eEEEecchHHHHHHH
Confidence            3466788999999999998642 2345667888899 999999998876653

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.60  E-value=0.86  Score=34.63  Aligned_cols=37  Identities=24%  Similarity=0.280  Sum_probs=31.1

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHH--------------------HcCCCeEEEEcCCc
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGAR--------------------LCGATRIIGVDVIS  236 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~--------------------~~g~~~vi~~~~~~  236 (243)
                      ..|++|+|+|.|.+++-++.++.                    ..|+++|.++.|..
T Consensus        37 ~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          37 LSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             ccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            45899999999999998887775                    57898999998754

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=83.26  E-value=0.62  Score=36.21  Aligned_cols=31  Identities=26%  Similarity=0.265  Sum_probs=27.1

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (243)
Q Consensus       205 VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~  236 (243)
                      ++|+|+|+.|+.++..+..+|. +|+++...+
T Consensus        45 vvVIGgG~aG~~aA~~~a~~G~-kv~vve~~~   75 (261)
T d1mo9a1          45 AIFIGGGAAGRFGSAYLRAMGG-RQLIVDRWP   75 (261)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            8888999999999999999999 788887543

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.20  E-value=0.95  Score=31.70  Aligned_cols=37  Identities=22%  Similarity=0.240  Sum_probs=27.9

Q ss_pred             CCCCEEEEECCCHHHHHHHHHH----HHcCCCeEEEEcCCch
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGA----RLCGATRIIGVDVISE  237 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la----~~~g~~~vi~~~~~~~  237 (243)
                      +.+++++|+|+|.+|.-++..+    +..|. +|+.+.+++.
T Consensus        35 ~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~-~Vt~i~~~~~   75 (137)
T d1m6ia2          35 REVKSITIIGGGFLGSELACALGRKARALGT-EVIQLFPEKG   75 (137)
T ss_dssp             HHCSEEEEECCSHHHHHHHHHHHHHHHHHTC-EEEEECSSSS
T ss_pred             hcCCEEEEECCCHHHHHHHHHHHHHHHhcCC-EEEEeccccc
Confidence            4578999999999996544333    46799 8999887664

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.92  E-value=1.7  Score=33.72  Aligned_cols=35  Identities=26%  Similarity=0.351  Sum_probs=29.2

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCC
Q 026140          200 EVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVI  235 (243)
Q Consensus       200 ~~g~~VlI~GaG~vG~~~v~la~-~~g~~~vi~~~~~  235 (243)
                      ..|++|+|.|.|.+|..+++++. ..|+ +|+++..+
T Consensus        30 l~g~~v~IqGfGnVG~~~a~~L~~~~G~-kvv~vsD~   65 (239)
T d1gtma1          30 LKGKTIAIQGYGNAGYYLAKIMSEDFGM-KVVAVSDS   65 (239)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEEECS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCc-ceeecccc
Confidence            57899999999999999998764 6799 88877643

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.03  E-value=0.66  Score=37.28  Aligned_cols=48  Identities=21%  Similarity=0.346  Sum_probs=38.2

Q ss_pred             HHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       192 ~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      .+.+.+++++|++||=+|.| .|..+..+|+..|+ +|++++.+++..+.
T Consensus        52 ~~~~~l~l~~G~~VLDiGCG-~G~~~~~~a~~~g~-~v~git~s~~q~~~   99 (291)
T d1kpia_          52 LALDKLNLEPGMTLLDIGCG-WGSTMRHAVAEYDV-NVIGLTLSENQYAH   99 (291)
T ss_dssp             HHHHTTCCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHH
T ss_pred             HHHHhcCCCCCCEEEEecCc-chHHHHHHHHhcCc-ceeeccchHHHHHH
Confidence            35688999999999999864 23356688888999 99999999886554

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=81.19  E-value=1  Score=34.48  Aligned_cols=50  Identities=22%  Similarity=0.200  Sum_probs=37.8

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140          190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (243)
Q Consensus       190 ~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~  241 (243)
                      +..+....++++|++||=+|.| .|..+..+++..|+ +|++++.+++-++.
T Consensus        22 ~~~l~~~~~l~pg~~VLDiGCG-~G~~~~~la~~~~~-~v~GvD~s~~~~~~   71 (245)
T d1nkva_          22 YATLGRVLRMKPGTRILDLGSG-SGEMLCTWARDHGI-TGTGIDMSSLFTAQ   71 (245)
T ss_dssp             HHHHHHHTCCCTTCEEEEETCT-TCHHHHHHHHHTCC-EEEEEESCHHHHHH
T ss_pred             HHHHHHHcCCCCCCEEEEEcCC-CCHHHHHHHHhcCC-EEEEEecccchhhH
Confidence            3346678899999999888763 23455667788898 99999998876554

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.92  E-value=1.6  Score=31.74  Aligned_cols=37  Identities=27%  Similarity=0.473  Sum_probs=30.0

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCchhh
Q 026140          203 STVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKF  239 (243)
Q Consensus       203 ~~VlI~GaG~vG~~~v~la~~~g~-~~vi~~~~~~~~~  239 (243)
                      .+|.|+|+|.+|..++..+...+. .+++.+|.++++.
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a   57 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLKGLADELALVDADTDKL   57 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhh
Confidence            579999999999998887777764 4799999887653

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.54  E-value=0.46  Score=36.38  Aligned_cols=43  Identities=16%  Similarity=0.146  Sum_probs=32.9

Q ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (243)
Q Consensus       195 ~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~  240 (243)
                      ......++.+||..|.|. |..+..+|+ .|+ +|+++|.++.-++
T Consensus        39 ~~l~~~~~~rvLd~GCG~-G~~a~~LA~-~G~-~V~gvD~S~~ai~   81 (229)
T d2bzga1          39 TFLKGKSGLRVFFPLCGK-AVEMKWFAD-RGH-SVVGVEISELGIQ   81 (229)
T ss_dssp             HHHTTCCSCEEEETTCTT-CTHHHHHHH-TTC-EEEEECSCHHHHH
T ss_pred             HhcCCCCCCEEEEeCCCC-cHHHHHHHh-CCC-cEEEEeCCHHHHH
Confidence            445678999999998653 566666665 699 9999999986554