Citrus Sinensis ID: 026196

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240--
Protein Sequence
MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRmesgtepdidlaTITDRMAVKKAVQCGNVEDAIEKVndlnpeildtnpqLFFHLQQQRLIELIRNGKVEEALEFAQEelaprgeenQSFLEELERTVALLAFedvsncpvgdlLDISQRLKTASEVNAAILtsqshekdpklPSLLKMLLWAQNQldekaayprindlatatledpai
Flexible Loop (DISEMBL)
MSLFWIVIRQLAEIEAMAmskkvitreewekklndvkirkedmnKLVMNFLVTEGYVDAAEKFrmesgtepdidlaTITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAIltsqshekdpkLPSLLKMLLWAQNQLDEKAAYPRINDlatatledpai
Low Complexity Region (SEG)
MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVeealefaqeelaPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI
Disordered region (IsUnstruct)
**LFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEF**************FLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAI**************LLKMLLWAQNQLDEKAAYPRI*************
Disordered Region (DISOPRED)
***FWI**RQ***********************NDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTS******PKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDP**
Disordered Region (DISEMBL)
MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI
Disordered Region (DISPRO)
*SLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATL*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLFWIVIRQLAEIEAMAMSKKVITxxxxxxxxxxxxxxxxxxxxxVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	242	2.2.26 [Sep-21-2011]
Q54X16	228	Glucose-induced degradati	yes	no	0.900	0.956	0.637	2e-79
A7SWD3	225	Glucose-induced degradati	N/A	no	0.892	0.96	0.506	7e-62
Q6PC55	228	Glucose-induced degradati	yes	no	0.925	0.982	0.546	2e-60
Q5ZKQ7	228	Glucose-induced degradati	yes	no	0.896	0.951	0.541	2e-60
Q32L52	228	Glucose-induced degradati	yes	no	0.896	0.951	0.532	1e-59
Q9D7M1	228	Glucose-induced degradati	yes	no	0.896	0.951	0.532	3e-59
Q9NWU2	228	Glucose-induced degradati	yes	no	0.896	0.951	0.532	6e-59
Q10446	240	Uncharacterized protein C	yes	no	0.797	0.804	0.354	1e-20
Q96S59	729	Ran-binding protein 9 OS=	no	no	0.376	0.124	0.347	3e-08
Q9PTY5	548	Ran-binding protein 9 OS=	N/A	no	0.429	0.189	0.320	6e-08

>sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog OS=Dictyostelium discoideum GN=DDB_G0279265 PE=3 SV=2

 Score =  295 bits (756), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 139/218 (63%), Positives = 171/218 (78%)

Query: 21  KKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITD 80
           KKVI+  EW+ KL +V I K D+NKLVMN+LV EGY +AA KF+ ES T+  +DLA+I D
Sbjct: 11  KKVISTSEWDDKLAEVNISKSDLNKLVMNYLVIEGYQEAAAKFQEESSTQTTVDLASIAD 70

Query: 81  RMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQ 140
           RMA++ A+QCG+VE  IE VNDLNPEILDTNPQL+FHLQQQ+LIELIR G   EAL+FAQ
Sbjct: 71  RMAIRSAIQCGDVEKGIEIVNDLNPEILDTNPQLYFHLQQQKLIELIRKGMTAEALKFAQ 130

Query: 141 EELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSH 200
           +ELAP+GEEN  FLEELE+T++LL FED +  P+  LLD SQR KTA E+N+AIL SQS 
Sbjct: 131 DELAPQGEENNKFLEELEKTISLLVFEDTAKSPLSSLLDHSQRQKTAGELNSAILLSQSQ 190

Query: 201 EKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLE 238
           +KDPKLP++LK+L WAQ QLD K  YP+I +  T   E
Sbjct: 191 DKDPKLPTILKLLKWAQTQLDSKCIYPKITNTVTGEYE 228

Dictyostelium discoideum (taxid: 44689)

>sp|A7SWD3|GID8_NEMVE Glucose-induced degradation protein 8 homolog OS=Nematostella vectensis GN=v1g247787 PE=3 SV=1

 Score =  237 bits (604), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 110/217 (50%), Positives = 167/217 (76%), Gaps = 1/217 (0%)

Query: 24  ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 83
           + REEW +K+  ++ ++ +MN+L+M++LVTEGY +AAEKFR+ESGT+P   L ++ DR+ 
Sbjct: 7   VNREEWMEKIGKLRFQRAEMNRLIMDYLVTEGYKEAAEKFRIESGTQPTAPLDSLDDRIK 66

Query: 84  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143
           +++AVQ G++E A+   N LNP+ILD+N QL+FHLQQQRLIELIR   +E A+EFAQ + 
Sbjct: 67  IREAVQKGDLEQAVSMTNKLNPDILDSNQQLYFHLQQQRLIELIREKDIEAAVEFAQGQF 126

Query: 144 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 203
           + +G+E+  +LEELE+T+ALLAF++    P GDLL  SQR K ASE+NAAIL ++  +  
Sbjct: 127 SEQGQESGRYLEELEQTMALLAFDNPEESPFGDLLHTSQRQKVASELNAAILEAEHKKTQ 186

Query: 204 PKLPSLLKMLLWAQNQLD-EKAAYPRINDLATATLED 239
           PKL ++LK+LLWAQ++L+ +K  +P++ ++A+ T E+
Sbjct: 187 PKLANVLKLLLWAQDELEGKKVKFPKMAEIASGTFEE 223

Nematostella vectensis (taxid: 45351)

>sp|Q6PC55|GID8_DANRE Glucose-induced degradation protein 8 homolog OS=Danio rerio GN=gid8 PE=2 SV=1

 Score =  232 bits (592), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 124/227 (54%), Positives = 171/227 (75%), Gaps = 3/227 (1%)

Query: 17  MAMSKKV--ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDID 74
           M+ S+K   IT+EEW  KLN+V I++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP++D
Sbjct: 1   MSYSEKPEDITKEEWMDKLNNVHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPNVD 60

Query: 75  LATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEE 134
           L ++ +R+ +++ V  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E 
Sbjct: 61  LDSLDERIKIREMVLKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRLRETEA 120

Query: 135 ALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAI 194
           ALEFAQ +LA +GEE++  L E+ERT+ALLAF++    P GDLL++ QR K  SEVN A+
Sbjct: 121 ALEFAQSQLAEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAV 180

Query: 195 LTSQSHEKDPKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP 240
           L  ++ E  PKL  LLK+LLWAQN+LD+ K  Y R+ DL+  T+EDP
Sbjct: 181 LDYENRESTPKLAKLLKLLLWAQNELDQKKVKYSRMTDLSKGTIEDP 227

Danio rerio (taxid: 7955)

>sp|Q5ZKQ7|GID8_CHICK Glucose-induced degradation protein 8 homolog OS=Gallus gallus GN=GID8 PE=2 SV=1

 Score =  232 bits (591), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 118/218 (54%), Positives = 167/218 (76%), Gaps = 1/218 (0%)

Query: 24  ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 83
           IT++EW +KLN++ I++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct: 10  ITKDEWMEKLNNLHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query: 84  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143
           +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ +L
Sbjct: 70  IREMILKGQIQEAISLINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query: 144 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 203
           A +GEE++  L E+ERT+ALLAF++    P GDLL++ QR K  SEVN A+L  ++ E  
Sbjct: 130 AEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENREST 189

Query: 204 PKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP 240
           PKL  LLK+LLWAQN+LD+ K  YP++ DL+  T+E+P
Sbjct: 190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGTIEEP 227

Gallus gallus (taxid: 9031)

>sp|Q32L52|GID8_BOVIN Glucose-induced degradation protein 8 homolog OS=Bos taurus GN=GID8 PE=2 SV=1

 Score =  229 bits (584), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 116/218 (53%), Positives = 167/218 (76%), Gaps = 1/218 (0%)

Query: 24  ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 83
           IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct: 10  ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query: 84  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143
           +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ +L
Sbjct: 70  IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query: 144 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 203
           A +GEE++  L E+ERT+ALLAF++  + P GDLL++ QR K  SEVN A+L  ++ E  
Sbjct: 130 AEQGEESRECLTEMERTLALLAFDNPEDSPFGDLLNMMQRQKVWSEVNQAVLDYENREST 189

Query: 204 PKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP 240
           PKL  LLK+LLWAQN+LD+ K  YP++ DL+   +E+P
Sbjct: 190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEP 227

Bos taurus (taxid: 9913)

>sp|Q9D7M1|GID8_MOUSE Glucose-induced degradation protein 8 homolog OS=Mus musculus GN=Gid8 PE=2 SV=1

 Score =  228 bits (581), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 116/218 (53%), Positives = 164/218 (75%), Gaps = 1/218 (0%)

Query: 24  ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 83
           IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct: 10  ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query: 84  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143
           +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ +L
Sbjct: 70  IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query: 144 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 203
           A +GEE++  L E+ERT+ALLAF+     P GDLL + QR K  SEVN A+L  ++ E  
Sbjct: 130 AEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHMMQRQKVWSEVNQAVLDYENREST 189

Query: 204 PKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP 240
           PKL  LLK+LLWAQN+LD+ K  YP++ DL+   +E+P
Sbjct: 190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEP 227

Mus musculus (taxid: 10090)

>sp|Q9NWU2|GID8_HUMAN Glucose-induced degradation protein 8 homolog OS=Homo sapiens GN=GID8 PE=1 SV=1

 Score =  227 bits (578), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 116/218 (53%), Positives = 163/218 (74%), Gaps = 1/218 (0%)

Query: 24  ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 83
           IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct: 10  ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query: 84  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143
           +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ +L
Sbjct: 70  IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query: 144 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 203
           A +GEE++  L E+ERT+ALLAF+     P GDLL   QR K  SEVN A+L  ++ E  
Sbjct: 130 AEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHTMQRQKVWSEVNQAVLDYENREST 189

Query: 204 PKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP 240
           PKL  LLK+LLWAQN+LD+ K  YP++ DL+   +E+P
Sbjct: 190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEP 227

Homo sapiens (taxid: 9606)

>sp|Q10446|YDED_SCHPO Uncharacterized protein C12B10.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC12B10.13 PE=4 SV=1

 Score =  100 bits (249), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 112/203 (55%), Gaps = 10/203 (4%)

Query: 27  EEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKK 86
           E+WEK+   V I   D+N L++++LV +G  +AA+ F  E+          + +R+ + +
Sbjct: 20  EQWEKQTKSVHIDNSDVNSLILDYLVIQGDEEAAKTFAEEAQITDYYIPPYVKERLEICE 79

Query: 87  AVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIEL---------IRNGKVEEALE 137
            ++ G++  AI K+N+L PEILDTN +L F L + RL+EL           +  VE  L 
Sbjct: 80  LIKSGSINSAICKLNELEPEILDTNSELLFELLRLRLLELIREVVEEKDTSDLAVERCLN 139

Query: 138 FAQEELAPRGEENQSFLEELERTVALLAFEDVSNCP-VGDLLDISQRLKTASEVNAAILT 196
           FA E LAP    NQ FL  LE T++LL F   S  P + ++L+ SQR + A+  N +IL 
Sbjct: 140 FAHENLAPLAPSNQKFLNSLELTMSLLCFPPSSYSPALKNVLNYSQRERVANLANVSILK 199

Query: 197 SQSHEKDPKLPSLLKMLLWAQNQ 219
           SQ    + +L SL+    W + +
Sbjct: 200 SQGLSNESRLLSLVNFERWCEKE 222

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q96S59|RANB9_HUMAN Ran-binding protein 9 OS=Homo sapiens GN=RANBP9 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 43  MNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVND 102
           + K+V ++LV  GY   AE F   +      +LA+I +R  ++K V  G + +AIE    
Sbjct: 369 IQKMVSSYLVHHGYCATAEAFARSTDQTVLEELASIKNRQRIQKLVLAGRMGEAIETTQQ 428

Query: 103 LNPEILDTNPQLFFHLQQQRLIELIRNGKVEE 134
           L P +L+ NP L F L+ ++ IE++ NG   E
Sbjct: 429 LYPSLLERNPNLLFTLKVRQFIEMV-NGTDSE 459

May act as an adapter protein to couple membrane receptors to intracellular signaling pathways. May be involved in signaling of ITGB2/LFA-1 and other integrins. Enhances HGF-MET signaling by recruiting Sos and activating the Ras pathway. Enhances dihydrotestosterone-induced transactivation activity of AR, as well as dexamethasone-induced transactivation activity of NR3C1, but not affect estrogen-induced transactivation. Stabilizes TP73 isoform Alpha, probably by inhibiting its ubiquitination, and increases its proapoptotic activity. Inhibits the kinase activity of DYRK1A and DYRK1B. Inhibits FMR1 binding to RNA.

Homo sapiens (taxid: 9606)

>sp|Q9PTY5|RANB9_XENLA Ran-binding protein 9 OS=Xenopus laevis GN=ranbp9 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 2/106 (1%)

Query: 43  MNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVND 102
           + ++V ++LV  GY   AE F   +      +LA+I +R  ++K V  G + +AIE    
Sbjct: 221 IQRMVSSYLVHHGYCSTAEAFAKSTDQTVQEELASIKNRQRIQKLVLSGRMGEAIETTQQ 280

Query: 103 LNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL-APRG 147
           L P +L+ NP L F L+ ++ IE++ NG   E        L +P G
Sbjct: 281 LYPSLLERNPNLLFTLKVRQFIEMV-NGTDSEVRCLGNRSLKSPDG 325

May act as an adapter protein to couple membrane receptors to intracellular signaling pathways.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
224113997	242	predicted protein [Populus trichocarpa]	1.0	1.0	0.962	1e-131
255560784	287	Protein C20orf11, putative [Ricinus comm	1.0	0.843	0.962	1e-131
356555082	242	PREDICTED: UPF0559 protein-like [Glycine	1.0	1.0	0.950	1e-130
449457706	242	PREDICTED: glucose-induced degradation p	1.0	1.0	0.950	1e-129
356549385	242	PREDICTED: UPF0559 protein-like [Glycine	1.0	1.0	0.946	1e-128
357446437	241	hypothetical protein MTR_2g012810 [Medic	0.987	0.991	0.949	1e-128
388507964	241	unknown [Medicago truncatula]	0.987	0.991	0.945	1e-127
359494870	293	PREDICTED: UPF0559 protein-like [Vitis v	1.0	0.825	0.774	1e-122
296080906	294	unnamed protein product [Vitis vinifera]	1.0	0.823	0.772	1e-121
224078908	226	predicted protein [Populus trichocarpa]	0.933	1.0	0.942	1e-120

>gi|224113997|ref|XP_002316637.1| predicted protein [Populus trichocarpa] gi|222859702|gb|EEE97249.1| predicted protein [Populus trichocarpa]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 233/242 (96%), Positives = 236/242 (97%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLFWIVIRQLAEIEAMA SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA
Sbjct: 1   MSLFWIVIRQLAEIEAMATSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60

Query: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120
           EKF+MESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFQMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 180
           QR IELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG LLDI
Sbjct: 121 QRFIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGGLLDI 180

Query: 181 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDP 240
           SQRLKTASEVNAAILTSQS EKDPKLPSLLKMLLWAQNQLDEKA YPRINDL+TA LEDP
Sbjct: 181 SQRLKTASEVNAAILTSQSREKDPKLPSLLKMLLWAQNQLDEKAVYPRINDLSTAMLEDP 240

Query: 241 AI 242
           A+
Sbjct: 241 AV 242

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560784|ref|XP_002521405.1| Protein C20orf11, putative [Ricinus communis] gi|223539304|gb|EEF40895.1| Protein C20orf11, putative [Ricinus communis]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 233/242 (96%), Positives = 238/242 (98%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLFWIVIRQLAEIEAMA SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA
Sbjct: 46  MSLFWIVIRQLAEIEAMATSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 105

Query: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120
           EKFR ESGTEPDIDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 106 EKFRKESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 165

Query: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 180
           QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDV+NCPVG+LLDI
Sbjct: 166 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVTNCPVGELLDI 225

Query: 181 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDP 240
           SQRLKTASEVNAAILTSQSHEKDPKLPSLLKML+WAQNQLDEKAAYPRINDL+TA LEDP
Sbjct: 226 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLIWAQNQLDEKAAYPRINDLSTAMLEDP 285

Query: 241 AI 242
           A+
Sbjct: 286 AV 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555082|ref|XP_003545868.1| PREDICTED: UPF0559 protein-like [Glycine max]

 Score =  468 bits (1205), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/242 (95%), Positives = 238/242 (98%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSL W+VIRQLAEIEAMA SKK+ITREEWEKKL+DVKIRKEDMNKLVMNFLVTEGYV+AA
Sbjct: 1   MSLLWLVIRQLAEIEAMAASKKLITREEWEKKLSDVKIRKEDMNKLVMNFLVTEGYVEAA 60

Query: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120
           EKFRMESGTEPDIDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 180
           QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG+LLDI
Sbjct: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDI 180

Query: 181 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDP 240
           SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLL AQNQLDEKAAYPR+NDL+TATLEDP
Sbjct: 181 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLCAQNQLDEKAAYPRVNDLSTATLEDP 240

Query: 241 AI 242
           A+
Sbjct: 241 AV 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457706|ref|XP_004146589.1| PREDICTED: glucose-induced degradation protein 8 homolog [Cucumis sativus] gi|449488429|ref|XP_004158034.1| PREDICTED: glucose-induced degradation protein 8 homolog [Cucumis sativus]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/242 (95%), Positives = 235/242 (97%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLFWIVIRQ AE EAMA SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA
Sbjct: 1   MSLFWIVIRQFAENEAMATSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60

Query: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120
           EKFRMESG EP+IDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFRMESGAEPEIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 180
           QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPV DLLDI
Sbjct: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVRDLLDI 180

Query: 181 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDP 240
           SQRLKTASEVNAAILTSQSHEKDPKLPSLLKML+WAQ+QLDEKAAYPRINDL+TA LEDP
Sbjct: 181 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLMWAQDQLDEKAAYPRINDLSTAMLEDP 240

Query: 241 AI 242
            +
Sbjct: 241 PV 242

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549385|ref|XP_003543074.1| PREDICTED: UPF0559 protein-like [Glycine max]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/242 (94%), Positives = 237/242 (97%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLF + IRQLAEIEAMA SKK+ITREEWEKKL+DVKIRKEDMNKLVMNFLVTEGYV+AA
Sbjct: 1   MSLFLLEIRQLAEIEAMAASKKLITREEWEKKLSDVKIRKEDMNKLVMNFLVTEGYVEAA 60

Query: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120
           EKFRMESGTEPDIDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 180
           QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG+LLDI
Sbjct: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDI 180

Query: 181 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDP 240
           SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLL AQNQLDEKAAYPR+NDL+TATLEDP
Sbjct: 181 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLCAQNQLDEKAAYPRVNDLSTATLEDP 240

Query: 241 AI 242
           A+
Sbjct: 241 AV 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446437|ref|XP_003593496.1| hypothetical protein MTR_2g012810 [Medicago truncatula] gi|355482544|gb|AES63747.1| hypothetical protein MTR_2g012810 [Medicago truncatula]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/239 (94%), Positives = 235/239 (98%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLFWIVIRQLA+IEAMA SKKVITREEWEKKLN+VKIRKEDMNKLVMNFLVTEG+VDAA
Sbjct: 1   MSLFWIVIRQLAQIEAMAASKKVITREEWEKKLNNVKIRKEDMNKLVMNFLVTEGFVDAA 60

Query: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120
           EKFR ESGTEPDIDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFRKESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 180
           QRLIELIRNGK+EEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG+LLDI
Sbjct: 121 QRLIELIRNGKIEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDI 180

Query: 181 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLED 239
           SQRLKTASEVNAAILTSQSHEKDPKLPSLLKML+WAQNQLDEKAA+PRINDL+TA LED
Sbjct: 181 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLIWAQNQLDEKAAFPRINDLSTAALED 239

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507964|gb|AFK42048.1| unknown [Medicago truncatula]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/239 (94%), Positives = 234/239 (97%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLFWIVIRQLA+IEAMA SKKVITREEWEKKLN+VKIRKEDMNKLVMNFLVTEG+VDAA
Sbjct: 1   MSLFWIVIRQLAQIEAMAASKKVITREEWEKKLNNVKIRKEDMNKLVMNFLVTEGFVDAA 60

Query: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120
           EKFR ESGTEPDIDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFRKESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 180
           QRLIELIRNGK+EEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG+LLDI
Sbjct: 121 QRLIELIRNGKIEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDI 180

Query: 181 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLED 239
           SQRLKTASEVNAAILTSQ HEKDPKLPSLLKML+WAQNQLDEKAA+PRINDL+TA LED
Sbjct: 181 SQRLKTASEVNAAILTSQRHEKDPKLPSLLKMLIWAQNQLDEKAAFPRINDLSTAALED 239

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494870|ref|XP_002264581.2| PREDICTED: UPF0559 protein-like [Vitis vinifera]

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/293 (77%), Positives = 237/293 (80%), Gaps = 51/293 (17%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLF IVIR+L EIE+MA SKKVITREEWE+KLNDVKIRKEDMNKLVMNFLVTEGYVDAA
Sbjct: 1   MSLFCIVIRELEEIESMASSKKVITREEWERKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60

Query: 61  EKFRMESGTE-------------------------------------------------- 70
           EKFRMESGTE                                                  
Sbjct: 61  EKFRMESGTEHIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEGYVDAAEKFRMESGT 120

Query: 71  -PDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRN 129
            PDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRN
Sbjct: 121 EPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRN 180

Query: 130 GKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASE 189
           GKV+EALEFAQEELAPRGEENQSFLEELE+TVALLAFED SNCPVG+LLDISQRLKTASE
Sbjct: 181 GKVDEALEFAQEELAPRGEENQSFLEELEKTVALLAFEDFSNCPVGELLDISQRLKTASE 240

Query: 190 VNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI 242
           VNAAILTSQSHEKDPKLPSLLKML+WAQNQLD+KAAYPRINDL+TA LEDPA+
Sbjct: 241 VNAAILTSQSHEKDPKLPSLLKMLIWAQNQLDDKAAYPRINDLSTARLEDPAV 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296080906|emb|CBI18750.3| unnamed protein product [Vitis vinifera]

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/294 (77%), Positives = 237/294 (80%), Gaps = 52/294 (17%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLF IVIR+L EIE+MA SKKVITREEWE+KLNDVKIRKEDMNKLVMNFLVTEGYVDAA
Sbjct: 1   MSLFCIVIRELEEIESMASSKKVITREEWERKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60

Query: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPE-------------- 106
           EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPE              
Sbjct: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEGYVDAAEKFRMESG 120

Query: 107 --------------------------------------ILDTNPQLFFHLQQQRLIELIR 128
                                                 ILDTNPQLFFHLQQQRLIELIR
Sbjct: 121 TEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIR 180

Query: 129 NGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTAS 188
           NGKV+EALEFAQEELAPRGEENQSFLEELE+TVALLAFED SNCPVG+LLDISQRLKTAS
Sbjct: 181 NGKVDEALEFAQEELAPRGEENQSFLEELEKTVALLAFEDFSNCPVGELLDISQRLKTAS 240

Query: 189 EVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI 242
           EVNAAILTSQSHEKDPKLPSLLKML+WAQNQLD+KAAYPRINDL+TA LEDPA+
Sbjct: 241 EVNAAILTSQSHEKDPKLPSLLKMLIWAQNQLDDKAAYPRINDLSTARLEDPAV 294

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078908|ref|XP_002305675.1| predicted protein [Populus trichocarpa] gi|222848639|gb|EEE86186.1| predicted protein [Populus trichocarpa]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/226 (94%), Positives = 220/226 (97%)

Query: 17  MAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLA 76
           MAMSKKVITREEWE+KLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKF+MESG EPDIDLA
Sbjct: 1   MAMSKKVITREEWERKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFQMESGAEPDIDLA 60

Query: 77  TITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEAL 136
           TITDRMA KKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKV EAL
Sbjct: 61  TITDRMAAKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVNEAL 120

Query: 137 EFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILT 196
           +FAQEELAPRGEE+ SFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILT
Sbjct: 121 QFAQEELAPRGEEDHSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILT 180

Query: 197 SQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI 242
           SQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRI +L+TA LEDPA+
Sbjct: 181 SQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRIKNLSTAMLEDPAV 226

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
TAIR|locus:2008460	243	AT1G61150 "AT1G61150" [Arabido	0.995	0.991	0.789	3.3e-95
DICTYBASE|DDB_G0279265	228	DDB_G0279265 "UPF0559 protein"	0.900	0.956	0.596	1.1e-66
UNIPROTKB|Q5ZKQ7	228	GID8 "Glucose-induced degradat	0.896	0.951	0.5	1.2e-56
ZFIN|ZDB-GENE-040426-1669	250	gid8a "GID complex subunit 8 h	0.983	0.952	0.485	1.2e-56
UNIPROTKB|Q32L52	228	GID8 "Glucose-induced degradat	0.896	0.951	0.490	5.3e-56
MGI|MGI:1923675	228	Gid8 "GID complex subunit 8 ho	0.896	0.951	0.490	1.4e-55
UNIPROTKB|Q9NWU2	228	GID8 "Glucose-induced degradat	0.896	0.951	0.490	2.3e-55
TAIR|locus:2137926	224	AT4G09300 "AT4G09300" [Arabido	0.896	0.968	0.524	1.3e-52
TAIR|locus:2197404	277	AT1G11110 "AT1G11110" [Arabido	0.921	0.805	0.512	5.6e-52
ASPGD|ASPL0000064925	271	AN7501 [Emericella nidulans (t	0.855	0.763	0.384	6.7e-33

TAIR|locus:2008460 AT1G61150 "AT1G61150" [Arabidopsis thaliana (taxid:3702)]

 Score = 947 (338.4 bits), Expect = 3.3e-95, P = 3.3e-95
 Identities = 191/242 (78%), Positives = 206/242 (85%)

Query:     1 MSLFWIVIRQLAEI-EAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDA 59
             MSLF I I QL E  E MA SKK+ITREEWEKKLN VK+RKEDMN LVMNFLVTEGYV+A
Sbjct:     1 MSLFRIFINQLEEDDEDMATSKKMITREEWEKKLNAVKLRKEDMNTLVMNFLVTEGYVEA 60

Query:    60 AEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQ 119
             AEKF+ ESGT+P+IDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNP+LFFHLQ
Sbjct:    61 AEKFQRESGTKPEIDLATITDRMAVKKAVQNGNVEDAIEKVNDLNPEILDTNPELFFHLQ 120

Query:   120 QQRLIELIRNGKVXXXXXXXXXXXXPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLD 179
             QQRLIELIR GK             PRGEENQ+FLEELE+TVALL F+D S CPV +LLD
Sbjct:   121 QQRLIELIRQGKTEEALEFAQEELAPRGEENQAFLEELEKTVALLVFDDASTCPVKELLD 180

Query:   180 ISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLED 239
             +S RLKTASEVNAAILTSQSHEKDPKLPSLLKML+WAQ QLDEKA YP INDL+T  LED
Sbjct:   181 LSHRLKTASEVNAAILTSQSHEKDPKLPSLLKMLIWAQTQLDEKAVYPHINDLSTGKLED 240

Query:   240 PA 241
             P+
Sbjct:   241 PS 242

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0279265 DDB_G0279265 "UPF0559 protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 130/218 (59%), Positives = 160/218 (73%)

Query:    21 KKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITD 80
             KKVI+  EW+ KL +V I K D+NKLVMN+LV EGY +AA KF+ ES T+  +DLA+I D
Sbjct:    11 KKVISTSEWDDKLAEVNISKSDLNKLVMNYLVIEGYQEAAAKFQEESSTQTTVDLASIAD 70

Query:    81 RMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXX 140
             RMA++ A+QCG+VE  IE VNDLNPEILDTNPQL+FHLQQQ+LIELIR G          
Sbjct:    71 RMAIRSAIQCGDVEKGIEIVNDLNPEILDTNPQLYFHLQQQKLIELIRKGMTAEALKFAQ 130

Query:   141 XXXXPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSH 200
                 P+GEEN  FLEELE+T++LL FED +  P+  LLD SQR KTA E+N+AIL SQS 
Sbjct:   131 DELAPQGEENNKFLEELEKTISLLVFEDTAKSPLSSLLDHSQRQKTAGELNSAILLSQSQ 190

Query:   201 EKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLE 238
             +KDPKLP++LK+L WAQ QLD K  YP+I +  T   E
Sbjct:   191 DKDPKLPTILKLLKWAQTQLDSKCIYPKITNTVTGEYE 228

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q5ZKQ7 GID8 "Glucose-induced degradation protein 8 homolog" [Gallus gallus (taxid:9031)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 109/218 (50%), Positives = 157/218 (72%)

Query:    24 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 83
             IT++EW +KLN++ I++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct:    10 ITKDEWMEKLNNLHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query:    84 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 143
             +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    70 IREMILKGQIQEAISLINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query:   144 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 203
               +GEE++  L E+ERT+ALLAF++    P GDLL++ QR K  SEVN A+L  ++ E  
Sbjct:   130 AEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENREST 189

Query:   204 PKLPSLLKMLLWAQNQLDEKAA-YPRINDLATATLEDP 240
             PKL  LLK+LLWAQN+LD+K   YP++ DL+  T+E+P
Sbjct:   190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGTIEEP 227

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-040426-1669 gid8a "GID complex subunit 8 homolog a (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 118/243 (48%), Positives = 167/243 (68%)

Query:     3 LFWIVIRQLA--EIEAMAMSKKV--ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVD 58
             + ++VI  L       M+ S+K   IT+EEW  KLN+V I++ DMN+L+MN+LVTEG+ +
Sbjct:     7 MIFVVISCLVYPSTSVMSYSEKPEDITKEEWMDKLNNVHIQRADMNRLIMNYLVTEGFKE 66

Query:    59 AAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHL 118
             AAEKFRMESG EP++DL ++ +R+ +++ V  G +++AI  +N L+PE+LDTN  L+FHL
Sbjct:    67 AAEKFRMESGIEPNVDLDSLDERIKIREMVLKGQIQEAIALINSLHPELLDTNRYLYFHL 126

Query:   119 QQQRLIELIRNGKVXXXXXXXXXXXXPRGEENQSFLEELERTVALLAFEDVSNCPVGDLL 178
             QQQ LIELIR  +              +GEE++  L E+ERT+ALLAF++    P GDLL
Sbjct:   127 QQQHLIELIRLRETEAALEFAQSQLAEQGEESRECLTEMERTLALLAFDNPEESPFGDLL 186

Query:   179 DISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAA-YPRINDLATATL 237
             ++ QR K  SEVN A+L  ++ E  PKL  LLK+LLWAQN+LD+K   Y R+ DL+  T+
Sbjct:   187 NMMQRQKVWSEVNQAVLDYENRESTPKLAKLLKLLLWAQNELDQKKVKYSRMTDLSKGTI 246

Query:   238 EDP 240
             EDP
Sbjct:   247 EDP 249

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q32L52 GID8 "Glucose-induced degradation protein 8 homolog" [Bos taurus (taxid:9913)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 107/218 (49%), Positives = 157/218 (72%)

Query:    24 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 83
             IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct:    10 ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query:    84 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 143
             +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    70 IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query:   144 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 203
               +GEE++  L E+ERT+ALLAF++  + P GDLL++ QR K  SEVN A+L  ++ E  
Sbjct:   130 AEQGEESRECLTEMERTLALLAFDNPEDSPFGDLLNMMQRQKVWSEVNQAVLDYENREST 189

Query:   204 PKLPSLLKMLLWAQNQLDEKAA-YPRINDLATATLEDP 240
             PKL  LLK+LLWAQN+LD+K   YP++ DL+   +E+P
Sbjct:   190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEP 227

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1923675 Gid8 "GID complex subunit 8 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 107/218 (49%), Positives = 154/218 (70%)

Query:    24 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 83
             IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct:    10 ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query:    84 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 143
             +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    70 IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query:   144 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 203
               +GEE++  L E+ERT+ALLAF+     P GDLL + QR K  SEVN A+L  ++ E  
Sbjct:   130 AEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHMMQRQKVWSEVNQAVLDYENREST 189

Query:   204 PKLPSLLKMLLWAQNQLDEKAA-YPRINDLATATLEDP 240
             PKL  LLK+LLWAQN+LD+K   YP++ DL+   +E+P
Sbjct:   190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEP 227

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9NWU2 GID8 "Glucose-induced degradation protein 8 homolog" [Homo sapiens (taxid:9606)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 107/218 (49%), Positives = 153/218 (70%)

Query:    24 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 83
             IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct:    10 ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query:    84 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 143
             +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    70 IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query:   144 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 203
               +GEE++  L E+ERT+ALLAF+     P GDLL   QR K  SEVN A+L  ++ E  
Sbjct:   130 AEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHTMQRQKVWSEVNQAVLDYENREST 189

Query:   204 PKLPSLLKMLLWAQNQLDEKAA-YPRINDLATATLEDP 240
             PKL  LLK+LLWAQN+LD+K   YP++ DL+   +E+P
Sbjct:   190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEP 227

GO:0005634 "nucleus" evidence=IEA

TAIR|locus:2137926 AT4G09300 "AT4G09300" [Arabidopsis thaliana (taxid:3702)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 117/223 (52%), Positives = 148/223 (66%)

Query:    17 MAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLA 76
             M   K V+T E+WE KL+DV+I  EDMN+LVMN LV EGY +AAEKF+ ES T P+ DLA
Sbjct:     1 METPKIVVTSEDWESKLSDVEILIEDMNRLVMNLLVAEGYREAAEKFKEESITMPEEDLA 60

Query:    77 TITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXX 136
             ++ +R+ V KA++  N+EDAIEK+N LNPEI+ T+    FHL QQ LIELIR  K     
Sbjct:    61 SMNERLEVIKAIESRNLEDAIEKLNALNPEIIKTS----FHLHQQMLIELIREKKTEEAV 116

Query:   137 XXXXXXXXPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILT 196
                     P  EEN++   ELE+TV +L  E + NCP  +L   SQ ++TAS VN AI T
Sbjct:   117 AFAQEKLAPLAEENEALQRELEKTVCILVTEGLPNCPSRELFHNSQWIRTASHVNEAIHT 176

Query:   197 SQSHEKDPKLPSLLKMLLWAQNQLDEKAAY--PRINDLATATL 237
             SQ+ EK P+L  LLK L+W QNQLDEK  Y  PR+ND +T  L
Sbjct:   177 SQTGEKGPELERLLKELIWTQNQLDEKTVYVYPRMNDFSTGQL 219

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2197404 AT1G11110 "AT1G11110" [Arabidopsis thaliana (taxid:3702)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 120/234 (51%), Positives = 159/234 (67%)

Query:    10 QLAEIEAMAMS---KKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRME 66
             Q++E E   +    KK+I  + WE+ L   +IRKEDMN+LVMNFLV EGY++A EKF+ E
Sbjct:    39 QISENEEFVIQEQPKKLIMSDVWEQYLTTAEIRKEDMNRLVMNFLVVEGYLEAVEKFQKE 98

Query:    67 SGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIEL 126
             SGT+  + +A+I+DR+AVK+ ++ G++EDA+EK+N +NPEIL TN    F L QQR IE 
Sbjct:    99 SGTK-QVGVASISDRLAVKRDIESGDLEDAVEKLNAINPEILKTN----FSLNQQRFIER 153

Query:   127 IRNG-KVXXXXXXXXXXXXPRGEENQSFLEELERTVALLAFEDVSNCPVGD--LLDISQR 183
             IR G  +            P  E+N +FLEELE+T+A+L F D+ + P  +  LLD S+ 
Sbjct:   154 IRIGVTIKETFNFAEKELKPLVEQNLAFLEELEKTMAILRFRDLPDIPEAERELLDNSRW 213

Query:   184 LKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATL 237
              KTA+EVNAAILTSQ+  K PKL  LLKML W QNQLDEK  YPR++ L T  L
Sbjct:   214 FKTAAEVNAAILTSQTGLKCPKLLDLLKMLTWTQNQLDEKVEYPRMSVLPTGQL 267

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000064925 AN7501 [Emericella nidulans (taxid:162425)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 83/216 (38%), Positives = 125/216 (57%)

Query:    25 TREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAV 84
             T   +E+K+++VK  K DMN+LVM++LVT GY  AA+KF +E+  EP +D+ +I +R+ +
Sbjct:    17 TWHHFERKVDEVKPSKTDMNRLVMDYLVTNGYPAAAQKFALEANIEP-VDVESIRERVEI 75

Query:    85 KKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRN------GKVXXXXXX 138
             + A+  GN++ AIEK+N+LNP+ILD NP L F L + +L+ELIR+      G +      
Sbjct:    76 RTAIYSGNIQAAIEKINELNPQILDENPSLHFSLLRLQLVELIRSCSVNPDGDITPALEF 135

Query:   139 XXXXXXPRGEENQSFLEELERTVALLAFEDVSNCP-VGDLLDISQRLKTASEVNAAILTS 197
                   PR   N  FLE+LE+T+ALL +   +  P +  LL    R    ++VNAAIL  
Sbjct:   136 ATSQLAPRAPTNPQFLEDLEKTLALLIYPKENLTPSLAPLLHSDLRRDIYAKVNAAILQD 195

Query:   198 QSHEKDPKLPSLLKMLLWAQNQLDE-KAAYPRINDL 232
             Q    +  L    ++  WA+ +  E K   P   DL
Sbjct:   196 QGARTEALLCDFARLYAWAEQKAREAKKDIPDKLDL 231

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9NWU2	GID8_HUMAN	No assigned EC number	0.5321	0.8966	0.9517	yes	no
Q54X16	GID8_DICDI	No assigned EC number	0.6376	0.9008	0.9561	yes	no
Q32L52	GID8_BOVIN	No assigned EC number	0.5321	0.8966	0.9517	yes	no
Q9D7M1	GID8_MOUSE	No assigned EC number	0.5321	0.8966	0.9517	yes	no
Q5ZKQ7	GID8_CHICK	No assigned EC number	0.5412	0.8966	0.9517	yes	no
A7SWD3	GID8_NEMVE	No assigned EC number	0.5069	0.8925	0.96	N/A	no
Q6PC55	GID8_DANRE	No assigned EC number	0.5462	0.9256	0.9824	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	242
pfam10607	144	pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif	1e-41
smart00757	99	smart00757, CRA, CT11-RanBPM	2e-25
smart00668	58	smart00668, CTLH, C-terminal to LisH motif	1e-11
pfam08513	27	pfam08513, LisH, LisH	8e-07
smart00667	34	smart00667, LisH, Lissencephaly type-1-like homolo	3e-06

>gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain

 Score =  138 bits (350), Expect = 1e-41
 Identities = 56/146 (38%), Positives = 83/146 (56%), Gaps = 3/146 (2%)

Query: 77  TITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEAL 136
              +R  +++++  G++E+A+E  N+  PE+L  N  L F L+ Q+ IELIR GK+ EAL
Sbjct: 1   VFKERNKIRESLLNGDLEEALEWCNENKPELLKINSNLEFELRLQQFIELIREGKILEAL 60

Query: 137 EFAQEELAPRGEENQSFLEELERTVALLAFEDVSNC-PVGDLLDISQRLKTASEVNAAIL 195
           E+A+E LAP   E    L+E+++ + LLAF D ++  P   LL  S+  K A+E N AIL
Sbjct: 61  EYARENLAPFFNE--QHLKEIQKLMGLLAFPDPTDSSPYKSLLSPSRWEKLANEFNRAIL 118

Query: 196 TSQSHEKDPKLPSLLKMLLWAQNQLD 221
                  +  L  LLK  L A   L 
Sbjct: 119 KLLGLSSESPLEILLKAGLSALKTLL 144

RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif. Length = 144

>gnl|CDD|214806 smart00757, CRA, CT11-RanBPM

 Score = 95.4 bits (238), Expect = 2e-25
 Identities = 44/96 (45%), Positives = 59/96 (61%), Gaps = 2/96 (2%)

Query: 130 GKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNC-PVGDLLDISQRLKTAS 188
           GK+EEAL +A+E LAP  +E++ FL+ELE+T+ALLA+ D +   P  +LL  SQR K A 
Sbjct: 1   GKIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAE 60

Query: 189 EVNAAILTSQS-HEKDPKLPSLLKMLLWAQNQLDEK 223
           E+N+AIL        +  L  LL   L A   L EK
Sbjct: 61  ELNSAILELLHGKSSESPLEILLSAGLAALKTLLEK 96

protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi). Length = 99

>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif

 Score = 58.0 bits (141), Expect = 1e-11
 Identities = 19/58 (32%), Positives = 39/58 (67%)

Query: 77  TITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEE 134
              +R  +++ +  G+ ++A+E ++ L P +L+ N +L F L++Q+ +EL+R GK+EE
Sbjct: 1   EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKLEE 58

Alpha-helical motif of unknown function. Length = 58

>gnl|CDD|149534 pfam08513, LisH, LisH

 Score = 43.8 bits (105), Expect = 8e-07
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 41 EDMNKLVMNFLVTEGYVDAAEKFRMES 67
          E++N+L+ ++LV  GY + AE F  ES
Sbjct: 1  EELNRLIYDYLVKSGYKETAEAFAKES 27

The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex. Length = 27

>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif

 Score = 42.4 bits (101), Expect = 3e-06
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 38 IRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEP 71
          I + ++N+L++ +L+  GY + AE  + ESG   
Sbjct: 1  ISRSELNRLILEYLLRNGYEETAETLQKESGLSL 34

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	242
KOG2659	228	consensus LisH motif-containing protein [Cytoskele	100.0
PF10607	145	CLTH: CTLH/CRA C-terminal to LisH motif domain; In	99.97
KOG0396	389	consensus Uncharacterized conserved protein [Funct	99.96
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	99.9
smart00757	99	CRA CT11-RanBPM. protein-protein interaction domai	99.7
smart00668	58	CTLH C-terminal to LisH motif. Alpha-helical motif	99.34
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.17
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	98.4
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	98.16
KOG1477	469	consensus SPRY domain-containing proteins [General	98.14
KOG0275	508	consensus Conserved WD40 repeat-containing protein	97.89
COG5109	396	Uncharacterized conserved protein, contains RING Z	97.35
KOG1333	241	consensus Uncharacterized conserved protein [Funct	95.32
PF09398	81	FOP_dimer: FOP N terminal dimerisation domain; Int	89.61

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]

Probab=100.00  E-value=9.5e-42  Score=285.64  Aligned_cols=219  Identities=58%  Similarity=0.895  Sum_probs=211.8

Q ss_pred             cCCChHHHHHHhccCCCCHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCC-CCCHHhHHHHHHHHHHHhcCCHHHHHHHH
Q 026196           22 KVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEP-DIDLATITDRMAVKKAVQCGNVEDAIEKV  100 (242)
Q Consensus        22 ~~~~~~~~~~~l~~~~~~~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~-~~~~~~~~~r~~I~~~I~~G~~~~Ai~~i  100 (242)
                      +.++.+.|.+.+.++.+.+.++|+||++||+++||.++|..|.+|+|+.+ ..|.+.+..|.+|+.+|..|+++.|++.+
T Consensus         8 ~~~~~~~w~~~~~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~i   87 (228)
T KOG2659|consen    8 SFSTKEEWEEQLMKVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKV   87 (228)
T ss_pred             ccCchhhhHHHHhccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999987 88999999999999999999999999999


Q ss_pred             HhhChhhhhcCcchhhhhHHHHHHHHHhcCChHHHHHHHHHhhcccccCCHHHHHHHHHHhhhhhccCCCCCccccccCh
Q 026196          101 NDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI  180 (242)
Q Consensus       101 ~~~~p~l~~~~~~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l~~~~~~~~~~~~~l~~~~~LL~~~~~~~sp~~~l~~~  180 (242)
                      +.+.|.++..+..|.|.|++|+||||||.|...+||+|+|++++|++..+++...+++++|++|+|+++..+|++.++..
T Consensus        88 n~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~~~  167 (228)
T KOG2659|consen   88 NQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELLSQ  167 (228)
T ss_pred             HHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998899999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhhh-hcCCCCccCCCCcccCCC
Q 026196          181 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP  240 (242)
Q Consensus       181 ~~r~~la~~vn~~il~~~g~~~~s~Le~l~k~~~~~q~~L~~-~~~~p~~~~~~~~~~~~~  240 (242)
                      ++|.++|..||++|+++++....+.|..+++...|++..+.. +..+|++.++.+|.++.|
T Consensus       168 s~R~kvA~~vN~aiL~~~~~~~~~~l~~llk~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  228 (228)
T KOG2659|consen  168 SLRQKVASEVNSAILASQEHESEPKLPFLLKLISWAQEELDREKFSEPHFKDLTKIKSEEP  228 (228)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhHhhccccccCCccccccCCC
Confidence            999999999999999999998899999999999999999866 678999999999999876

>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10

Probab=99.97  E-value=4.9e-30  Score=204.60  Aligned_cols=140  Identities=38%  Similarity=0.586  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCcchhhhhHHHHHHHHHhcCChHHHHHHHHHhhcccccCCHHHHHHH
Q 026196           78 ITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEEL  157 (242)
Q Consensus        78 ~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l~~~~~~~~~~~~~l  157 (242)
                      +.+|+.|+++|++||+++|++||++++|.+++.++.+.|.|++|+|||||+++++.+||+|+|++++|+..   ...+++
T Consensus         2 ~~~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~---~~~~~l   78 (145)
T PF10607_consen    2 FKERKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFND---EFLEEL   78 (145)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHH---HHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999976654   457899


Q ss_pred             HHHhhhhhccCCCC---CccccccChhhHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHh
Q 026196          158 ERTVALLAFEDVSN---CPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQL  220 (242)
Q Consensus       158 ~~~~~LL~~~~~~~---sp~~~l~~~~~r~~la~~vn~~il~~~g~~~~s~Le~l~k~~~~~q~~L  220 (242)
                      +++|++|+|+++.+   +||++++++.+|+.|++.||++++..+|.+..|+|+.+++++.++.+.|
T Consensus        79 ~~~~~lL~~~~~~~~~~s~~~~l~~~~~~~~la~~~~~~~l~~~~~~~~s~L~~~~~~g~~~l~~l  144 (145)
T PF10607_consen   79 KKLMSLLAYPDPEEPLPSPYKELLSPERREELAEEFNSAILKSYGLPKESPLEVILKAGLSALKTL  144 (145)
T ss_pred             HHHHHHHHcCCcccccchHHHHHhChHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhc
Confidence            99999999999987   7999999999999999999999999999999999999999999998764

RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.96  E-value=1e-28  Score=217.42  Aligned_cols=178  Identities=22%  Similarity=0.322  Sum_probs=169.5

Q ss_pred             CHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCcchhhhh
Q 026196           39 RKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHL  118 (242)
Q Consensus        39 ~~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~L~F~L  118 (242)
                      ++..++++|++||.|+||++||..|.++++++..+|.+.+...+.|+++|++|++.+|+.||++|...|.+.++.++|.+
T Consensus       114 ~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~~S~lEf~l  193 (389)
T KOG0396|consen  114 PRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKEESSLEFQL  193 (389)
T ss_pred             HHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccchhhhHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhcccccCCHHHHHHHHHHhhhhhcc-CCCCCccccccChhhHHHHHHHHHHHHHhh
Q 026196          119 QQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFE-DVSNCPVGDLLDISQRLKTASEVNAAILTS  197 (242)
Q Consensus       119 ~~q~fIEli~~~~~~~Al~~~r~~l~~~~~~~~~~~~~l~~~~~LL~~~-~~~~sp~~~l~~~~~r~~la~~vn~~il~~  197 (242)
                      +.|+|||||+.+++.+||.|+|++++|++..+   +.+++.+||+++|+ .++.++|..+++..||..+++.|-+..++.
T Consensus       194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~---~~~Lk~a~g~laF~~~t~~sky~~l~~~~rw~~l~~lF~s~a~~l  270 (389)
T KOG0396|consen  194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSH---KSDLKLAMGLLAFPKYTSSSKYLNLLTADRWSVLADLFLSEALKL  270 (389)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhh---HHHHHHHHHhhcCccccCcccccCcccHHHHHHHHHHhhHHHHHH
Confidence            99999999999999999999999999998644   78999999999999 456678999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHH
Q 026196          198 QSHEKDPKLPSLLKMLLWAQNQ  219 (242)
Q Consensus       198 ~g~~~~s~Le~l~k~~~~~q~~  219 (242)
                      +|.+..|+|-..+.....+++.
T Consensus       271 ~~i~~~~~L~~~l~~GLsalKT  292 (389)
T KOG0396|consen  271 FGIPINPALTIYLQAGLSALKT  292 (389)
T ss_pred             hCCCCCcHHHHHHHhhhhhccc
Confidence            9999999999999988888776

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.4e-22  Score=180.67  Aligned_cols=201  Identities=19%  Similarity=0.287  Sum_probs=172.3

Q ss_pred             hccCCCCHHHH-HHHHHHHHHHhCHHHHHHHHHHHhCCCCC--CCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhh
Q 026196           33 LNDVKIRKEDM-NKLVMNFLVTEGYVDAAEKFRMESGTEPD--IDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILD  109 (242)
Q Consensus        33 l~~~~~~~~~l-~~LI~~yL~~~Gy~~ta~~f~~E~~i~~~--~~~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~  109 (242)
                      ..++..++..+ |.+|..|++++|..|+|..|++|+|....  .....|.+.++|..+|.+||+.+|++|+..++..|.+
T Consensus       108 ~~~v~~~~~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~  187 (394)
T KOG2817|consen  108 RNSVDFDTSQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKE  187 (394)
T ss_pred             hcCcChhHHHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcc
Confidence            34566666555 99999999999999999999999999754  4567889999999999999999999999999999999


Q ss_pred             cCcchhhhhHHHHHHHHHhcCChH--HHHHHHHHhhcccccCCHHHHHHHHHHhhhhhccC--CCCCccccccChhhHHH
Q 026196          110 TNPQLFFHLQQQRLIELIRNGKVE--EALEFAQEELAPRGEENQSFLEELERTVALLAFED--VSNCPVGDLLDISQRLK  185 (242)
Q Consensus       110 ~~~~L~F~L~~q~fIEli~~~~~~--~Al~~~r~~l~~~~~~~~~~~~~l~~~~~LL~~~~--~~~sp~~~l~~~~~r~~  185 (242)
                      .++.|+|.|+.++|+++++.|...  +||.|+|++++||+.++   .++++++|++|.|-.  -+++||.+++++..|..
T Consensus       188 ~~s~LE~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~---~~eIQklm~sl~~l~~gl~~spy~~~ls~~~w~~  264 (394)
T KOG2817|consen  188 KSSSLEFKLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADH---LREIQKLMGSLLYLRNGLEKSPYSEILSPKLWKE  264 (394)
T ss_pred             ccccHHHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccch---HHHHHHHHHHHHHHHcCCCCCChHHHhCHHHHHH
Confidence            999999999999999999988655  99999999999998766   689999999999874  36899999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCCCcHHHHHHHHHHH-----------HH---HhhhhcCCCCccCCCCcc
Q 026196          186 TASEVNAAILTSQSHEKDPKLPSLLKMLLWA-----------QN---QLDEKAAYPRINDLATAT  236 (242)
Q Consensus       186 la~~vn~~il~~~g~~~~s~Le~l~k~~~~~-----------q~---~L~~~~~~p~~~~~~~~~  236 (242)
                      +...|-+..+...|.+.+|+|..++.....+           ..   .+..++..|--++|+.+.
T Consensus       265 ~~~~f~r~ycallg~s~eSPL~v~v~aG~~Alp~Llk~~~v~~~~~~~W~~~deLPveIeL~~~~  329 (394)
T KOG2817|consen  265 LTEEFTREYCALLGISVESPLSVLVNAGCIALPQLLKYKSVMELKHGEWNTKDELPVEIELGKEY  329 (394)
T ss_pred             HHHHHHHHHHHHcCCCccCcHHHHHHhhHHHHHHHHHHHHHHHHhccCccccccCccceeccccc
Confidence            9999999999999999999887766553322           21   133345778777777765

>smart00757 CRA CT11-RanBPM

Probab=99.70  E-value=1.4e-16  Score=118.72  Aligned_cols=93  Identities=46%  Similarity=0.568  Sum_probs=87.5

Q ss_pred             ChHHHHHHHHHhhcccccCCHHHHHHHHHHhhhhhccCC-CCCccccccChhhHHHHHHHHHHHHHhhC-CCCCCCcHHH
Q 026196          131 KVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDV-SNCPVGDLLDISQRLKTASEVNAAILTSQ-SHEKDPKLPS  208 (242)
Q Consensus       131 ~~~~Al~~~r~~l~~~~~~~~~~~~~l~~~~~LL~~~~~-~~sp~~~l~~~~~r~~la~~vn~~il~~~-g~~~~s~Le~  208 (242)
                      ++.+||+|||++++|+...++...++++++|++|+|+++ +.+||++++++++|..|++.||++++..+ |.+.+|+|+.
T Consensus         2 ~~~eAi~yar~~l~~~~~~~~~~~~el~~~m~llaf~~~~~~sp~~~ll~~~~~~~la~~~n~~~l~~~~~~~~~s~L~~   81 (99)
T smart00757        2 KIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAEELNSAILELLHGKSSESPLEI   81 (99)
T ss_pred             cHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHhcCCCCCCccHHHHCCHHHHHHHHHHHHHHHHHHccCCCCCChHHH
Confidence            578999999999999998887778899999999999998 89999999999999999999999999999 9999999999


Q ss_pred             HHHHHHHHHHHhhhh
Q 026196          209 LLKMLLWAQNQLDEK  223 (242)
Q Consensus       209 l~k~~~~~q~~L~~~  223 (242)
                      ++++..|+++.+...
T Consensus        82 ~~~~~~~~~~~l~~~   96 (99)
T smart00757       82 LLSAGLAALKTLLEK   96 (99)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999988653

protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi)

>smart00668 CTLH C-terminal to LisH motif

Probab=99.34  E-value=1.9e-12  Score=87.06  Aligned_cols=55  Identities=31%  Similarity=0.669  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCcchhhhhHHHHHHHHHhcCCh
Q 026196           78 ITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKV  132 (242)
Q Consensus        78 ~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~L~F~L~~q~fIEli~~~~~  132 (242)
                      +..+..|+++|+.|+|++|++|++.++|.+.+.++.+.|.|++|+|+|+++.++.
T Consensus         2 ~~~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~L~~q~~lell~~~~~   56 (58)
T smart00668        2 FDERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKL   56 (58)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhHHHHHHHHHHHHcCCc
Confidence            4678999999999999999999999999999999999999999999999998764

Alpha-helical motif of unknown function.

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.17  E-value=3.3e-10  Score=102.12  Aligned_cols=170  Identities=15%  Similarity=0.160  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCcchhhhhH
Q 026196           40 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQ  119 (242)
Q Consensus        40 ~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~L~F~L~  119 (242)
                      +.++.+++.+.|+..||.+++..++.|+|+.....     .-+.+.+.+++|+|+.++.-+....-+..+......|.+.
T Consensus        17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~ta-----t~klf~q~vlqg~w~q~v~~~~~i~~~de~~~~ea~fLv~   91 (519)
T KOG0293|consen   17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTA-----TTKLFDQQVLQGQWDQQVMSLVRISFEDERNRKEAMFLVN   91 (519)
T ss_pred             cchhhHhHHHHHHhcCccccchhhHHhhCcccccc-----hHHHHHHHHHcccHHHHHHHHhhccCcchhhhHHHHHHHH
Confidence            67789999999999999999999999999874332     2456889999999999998887763233445578999999


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhhcccccCCHHHHHHHHHHhhhhhccCCCCC-ccc-cccChhhHHHHHHHHHHHHHhh
Q 026196          120 QQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNC-PVG-DLLDISQRLKTASEVNAAILTS  197 (242)
Q Consensus       120 ~q~fIEli~~~~~~~Al~~~r~~l~~~~~~~~~~~~~l~~~~~LL~~~~~~~s-p~~-~l~~~~~r~~la~~vn~~il~~  197 (242)
                      +|.|+|+++.|++..|+...|+.+.+....    .+.+.++.+.|++++...+ ... .-.....|.+|.+++.+.|...
T Consensus        92 kQ~fLEf~k~~~is~al~~l~~~~~~lr~~----~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~  167 (519)
T KOG0293|consen   92 KQIFLEFLKTGSISHALPVLRNPVLYLRKN----KKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPN  167 (519)
T ss_pred             HHHHHHHHhhccHhhhhHhhhcchhhhhhh----HHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHh
Confidence            999999999999999999999877776543    4677777778887743221 111 1112345889999998888655


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHH
Q 026196          198 QSHEKDPKLPSLLKMLLWAQNQ  219 (242)
Q Consensus       198 ~g~~~~s~Le~l~k~~~~~q~~  219 (242)
                      .- .|+.+||.|+++++..|..
T Consensus       168 il-lP~rRLehLl~qAv~~Q~d  188 (519)
T KOG0293|consen  168 IL-LPKRRLEHLLEQAVKYQRD  188 (519)
T ss_pred             hc-CChHHHHHHHHHHHHHHHh
Confidence            43 4688999999999988754

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=98.40  E-value=4.9e-07  Score=51.43  Aligned_cols=27  Identities=37%  Similarity=0.811  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHh
Q 026196           41 EDMNKLVMNFLVTEGYVDAAEKFRMES   67 (242)
Q Consensus        41 ~~l~~LI~~yL~~~Gy~~ta~~f~~E~   67 (242)
                      ++||.+|.+||.++||.+||.+|.+|+
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            469999999999999999999999985

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=98.16  E-value=4.4e-06  Score=49.31  Aligned_cols=32  Identities=31%  Similarity=0.754  Sum_probs=29.4

Q ss_pred             CHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCC
Q 026196           39 RKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE   70 (242)
Q Consensus        39 ~~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~   70 (242)
                      .+.+++++|++||.++||.+||.+|.+|+|+.
T Consensus         2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        2 SRSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            36789999999999999999999999999874

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]

Probab=98.14  E-value=4e-07  Score=85.50  Aligned_cols=181  Identities=24%  Similarity=0.191  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCC----CHHhH--------HHHHHHHHHHhcCCHHHHHHHHHhhChhh
Q 026196           40 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDI----DLATI--------TDRMAVKKAVQCGNVEDAIEKVNDLNPEI  107 (242)
Q Consensus        40 ~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~~~----~~~~~--------~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l  107 (242)
                      .......+..|+++.|+.+++..|+..+......    ....+        ..+...+..+-.|.+..+.+.+.+..+..
T Consensus       249 ~~l~t~~~~~~~l~~~~~~s~~~~s~~~~~~~~~~~~~e~~s~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~  328 (469)
T KOG1477|consen  249 FNLSTVPYPYFLLPGGYEESIAYFSTGARRFNDPFTGKEENSIDAVGSQTDKIGLDYHQRKGRGQFTRNGAYNAALIPTY  328 (469)
T ss_pred             ccccCCCccceecCcchhhhhhhhcchhhccCCcccchhhhhhhccccccchhhhhhhhhcCcceeechhhhcccccccc
Confidence            3344468899999999999999999876542100    00000        01222333333334444444444443333


Q ss_pred             hh-------cCcchhhhhHHHHHHHHHhcCChHHHHHHHHHhhccccc--CCHHHHHHHHHHhhhhhccCCCCCcccccc
Q 026196          108 LD-------TNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGE--ENQSFLEELERTVALLAFEDVSNCPVGDLL  178 (242)
Q Consensus       108 ~~-------~~~~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l~~~~~--~~~~~~~~l~~~~~LL~~~~~~~sp~~~l~  178 (242)
                      ..       ..+...+.+.|+.++.+.+.+.+...+++.+.++++...  .+......++.+++|++|.+|..+|....+
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~v~~e~~~~k~~l~~~~g~~~~~~~~~~~~~s~~Llays~p~~s~~g~~~  408 (469)
T KOG1477|consen  329 RKVGQVFEVDYPQRGAKDPCGLHVNLGRAGFVFIEANAKKWELAKDYGIKKNSAAVGMLSDSSSLLAYSDPEESPVGYLL  408 (469)
T ss_pred             cccceeecccccchhhccchhhhhhHHHHHHHHHHHHHHHHhhhhhhCcCccccccccccchHHHHHhcCcccCcccccc
Confidence            33       347789999999999999999999999999999888765  333446789999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHh
Q 026196          179 DISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQL  220 (242)
Q Consensus       179 ~~~~r~~la~~vn~~il~~~g~~~~s~Le~l~k~~~~~q~~L  220 (242)
                      ++..|+-+++.+|.+++...+.++++.|+.++.+...+-..+
T Consensus       409 ~~~~~e~v~~~~n~~il~t~~~~~~~~l~~~l~~~~~~~~~~  450 (469)
T KOG1477|consen  409 DPIQREPVAEALNSAILETDNNSKDPDLERVLSQTPAELSLY  450 (469)
T ss_pred             CcccchhHHhhhcccccccCCCCccchhhhhhccchhhHhhh
Confidence            999999999999999999999999999999999988776554

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=97.89  E-value=0.00014  Score=64.65  Aligned_cols=164  Identities=19%  Similarity=0.236  Sum_probs=113.1

Q ss_pred             CCCHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCcchhh
Q 026196           37 KIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFF  116 (242)
Q Consensus        37 ~~~~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~L~F  116 (242)
                      .+...++.++|.+||-.+.+-.|..+|.+|+++...    .......+.+.|-+|+||..+.-++...-     ...-.-
T Consensus         4 eiessdVIrli~QflKE~~L~rtl~tLQeEt~VSLN----TVDSvd~Fv~dI~sG~WD~VL~~vqsLKL-----P~kkL~   74 (508)
T KOG0275|consen    4 EIESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLN----TVDSVDGFVNDINSGHWDTVLKTVQSLKL-----PDKKLI   74 (508)
T ss_pred             eeecchHHHHHHHHHhhhhHHHHHHHHHHhhcccee----echhHHHHHHhcccCchHHHHHHHHhccC-----chhHHH
Confidence            344567999999999999999999999999987642    11123457889999999999999887542     223356


Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHhhccccc---CCHHHHHHHHHHhhhhh--ccCCCCCccccccChhhHHHHHHHHH
Q 026196          117 HLQQQRLIELIRNGKVEEALEFAQEELAPRGE---ENQSFLEELERTVALLA--FEDVSNCPVGDLLDISQRLKTASEVN  191 (242)
Q Consensus       117 ~L~~q~fIEli~~~~~~~Al~~~r~~l~~~~~---~~~~~~~~l~~~~~LL~--~~~~~~sp~~~l~~~~~r~~la~~vn  191 (242)
                      .|+.|-.+|||.-.....|-..+|+. .|+..   ..|+..-.++   .||.  |-||... |.+--...+|..+|+.+.
T Consensus        75 dLYEqivlEliELREL~tAR~~lRQT-dpM~~lKQ~~peRy~~lE---~ll~R~YFDp~Ea-Y~dssKEkrRa~IAQ~ls  149 (508)
T KOG0275|consen   75 DLYEQIVLELIELRELGTARSLLRQT-DPMIMLKQIQPERYIRLE---NLLNRSYFDPREA-YGDSSKEKRRAVIAQALS  149 (508)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhcc-CceehhhccChHHHHHHH---HHhcccccChhhh-cCcchHHHHHHHHHHHhc
Confidence            78999999999988888888888753 33322   2333333444   4554  5566433 555333466677776665


Q ss_pred             HHHHhhCCCCCCCcHHHHHHHHHHHHH
Q 026196          192 AAILTSQSHEKDPKLPSLLKMLLWAQN  218 (242)
Q Consensus       192 ~~il~~~g~~~~s~Le~l~k~~~~~q~  218 (242)
                      ..+    ...+.|+|..|+-|+...|.
T Consensus       150 ~EV----~VVppSRLlaLlGQaLKWQq  172 (508)
T KOG0275|consen  150 GEV----HVVPPSRLLALLGQALKWQQ  172 (508)
T ss_pred             Cce----EEcChHHHHHHHHHHhhhHh
Confidence            433    44567889998888776654

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.35  E-value=0.0077  Score=53.35  Aligned_cols=191  Identities=11%  Similarity=0.039  Sum_probs=130.3

Q ss_pred             cccCCChHHHHHHhccCCCCHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCC-CCCHHhHHHHHHHHHHHhcCCHHHHHH
Q 026196           20 SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEP-DIDLATITDRMAVKKAVQCGNVEDAIE   98 (242)
Q Consensus        20 ~~~~~~~~~~~~~l~~~~~~~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~-~~~~~~~~~r~~I~~~I~~G~~~~Ai~   98 (242)
                      ++.+++.... +.+-..+.....++.+...++.+.|-..-+..|+.+.|+.+ ....+.|...+.|.+.|.+.+...-++
T Consensus        81 ~~~nFd~~~~-n~~~~f~~~~v~~~~~~~l~~~n~~dv~~~hi~~~~~g~~e~~~~~~~f~~lK~v~~gI~~k~~~l~iE  159 (396)
T COG5109          81 RPANFDVQVG-NQIYPFSTQTVTYLVVYYLLENNCADVVERHISETKDGKDEIIKIRDGFVKLKKVISGISEKSTFLLIE  159 (396)
T ss_pred             ccccCCHHHH-hhcCCCccceeeehHHHHHHHhhHHHHHHHHHHHhhcCccchhhHHHHHHHHHHHHHhhccchhHhHHH
Confidence            4444555444 22333344555566666677777777888888999999875 345688899999999999999999999


Q ss_pred             HHHhhChhhhhcCcchhhhhHHH--HHHHHHhcCChHHHHHHHHHhhcccccCCHHHHHHHHHHhhhhhccCC------C
Q 026196           99 KVNDLNPEILDTNPQLFFHLQQQ--RLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDV------S  170 (242)
Q Consensus        99 ~i~~~~p~l~~~~~~L~F~L~~q--~fIEli~~~~~~~Al~~~r~~l~~~~~~~~~~~~~l~~~~~LL~~~~~------~  170 (242)
                      |.+ ....+.+.++...+.+...  .++-++.+ ++++|+.++++.++.+...|   ...++..+-.+.+...      +
T Consensus       160 ~~Q-i~gyl~kgdtesel~l~~~~~esl~l~hk-~~~~a~r~c~t~~a~f~~kh---~~dv~~~~~~l~nap~dcfrhre  234 (396)
T COG5109         160 FLQ-IEGYLSKGDTESELELYLVSHESLLLIHK-RYDEALRLCFTKLASFVPKH---IQDVKPLLRFLVNAPTDCFRHRE  234 (396)
T ss_pred             HHH-hcCccccCCchhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh---ccchHHHHHHHHcCchHHhhhcc
Confidence            993 3444555555555555544  44445544 79999999999988886443   4455555555544211      0


Q ss_pred             ----------------CCccccccC--hhhHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHH
Q 026196          171 ----------------NCPVGDLLD--ISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQ  217 (242)
Q Consensus       171 ----------------~sp~~~l~~--~~~r~~la~~vn~~il~~~g~~~~s~Le~l~k~~~~~q  217 (242)
                                      +-|. +.+|  ...|..+...|.+.+++..|++-+|+|..++.....+-
T Consensus       235 kelmqnI~~~l~ksligqPi-EdIDkvnk~~k~l~~lF~~eycaa~gm~~~spL~~~v~tG~iaf  298 (396)
T COG5109         235 KELMQNIQEALKKSLIGQPI-EDIDKVNKSRKKLIELFKSEYCAANGMPNRSPLRELVETGTIAF  298 (396)
T ss_pred             hhHHHHHHHHHHHhhcCCcH-HHHHHhhhhHHHHHHHHHHHHHHhcCCCccChHHHHHHhhhHHH
Confidence                            0010 0111  25689999999999999999999999999887755443

>KOG1333 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.32  E-value=0.22  Score=41.68  Aligned_cols=142  Identities=13%  Similarity=0.153  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhc----C----c
Q 026196           41 EDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDT----N----P  112 (242)
Q Consensus        41 ~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~----~----~  112 (242)
                      ...+.+|-+||.-.|+.-|.++|-.|.........-.=....++.+++-..|++.--+.=.....+++..    .    .
T Consensus         6 ~~tDelvReYL~frgf~~tLkalD~E~~~~Ke~~frvdrivdq~~~a~q~~Dl~aLr~~W~~l~~r~Fs~Le~~y~~~~~   85 (241)
T KOG1333|consen    6 ERTDELVREYLLFRGFTHTLKALDAEIKADKEKGFRVDRIVDQLQQAMQVYDLAALRDYWSYLERRLFSRLEDIYRPTIH   85 (241)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhHHHhhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            4578999999999999999999988876543211111123445667777788877655444433343332    1    3


Q ss_pred             chhhhhHHHHHHHHHhcCChHHHHHHHHHhhcccccCCHHHHHHHHHHhhhhhcc---CC-CCCccccccChhhHHHHHH
Q 026196          113 QLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFE---DV-SNCPVGDLLDISQRLKTAS  188 (242)
Q Consensus       113 ~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l~~~~~~~~~~~~~l~~~~~LL~~~---~~-~~sp~~~l~~~~~r~~la~  188 (242)
                      .++--+.+...+-.|.++..++|-+|.++.-+.... +    .+-++   ..+|+   .. ...|++.+++...-+-..-
T Consensus        86 kle~Sl~r~yLV~~~q~nr~~K~~EFF~K~a~~lqn-q----~eWkD---WF~fPf~~~a~~tppf~~~F~ktw~e~~~~  157 (241)
T KOG1333|consen   86 KLETSLFRFYLVYTIQTNRNDKAQEFFAKQATELQN-Q----AEWKD---WFVLPFLPSAKDTPPFRKYFDKTWIEIYYV  157 (241)
T ss_pred             HHHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhc-c----hhhhh---heecccCCCCCCCccHHHHHHhhhhHhhhh
Confidence            456667777788888899999999999976544432 2    23343   33333   22 2356888877754444333


Q ss_pred             HH
Q 026196          189 EV  190 (242)
Q Consensus       189 ~v  190 (242)
                      .+
T Consensus       158 sl  159 (241)
T KOG1333|consen  158 SL  159 (241)
T ss_pred             hH
Confidence            33

>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes

Probab=89.61  E-value=0.79  Score=32.89  Aligned_cols=31  Identities=23%  Similarity=0.283  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHhCCCC
Q 026196           41 EDMNKLVMNFLVTEGYVDAAEKFRMESGTEP   71 (242)
Q Consensus        41 ~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~   71 (242)
                      ..++.||.+||..+||.=|+..|..|+|...
T Consensus        19 ~Li~eLIrEyLef~~l~~TlsVf~~Es~~~~   49 (81)
T PF09398_consen   19 RLINELIREYLEFNNLDYTLSVFQPESGQPE   49 (81)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHT-TT
T ss_pred             HHHHHHHHHHHHHcCCccHHHHHhhccCCCC
Confidence            4579999999999999999999999999864

This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	242
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 1e-08
 Identities = 49/294 (16%), Positives = 94/294 (31%), Gaps = 97/294 (32%)

Query: 4   FWIVIRQLAEIEA-MAMSKKVITR-----EEWEKKLNDVKIRKEDMNKLVMNFLVTEGYV 57
           FW+ ++     E  + M +K++ +            +++K+R   +   +   L ++ Y 
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 58  DA------------AEKFRMESGTEPDIDLAT-----ITDRMAVKKA-------VQCGNV 93
           +                F +         L T     +TD ++                 
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKI-----LLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 94  EDAIE---------KVNDLNPEILDTNPQLFFHLQQQRLI-ELIRNG------------- 130
            D ++         +  DL  E+L TNP     L    +I E IR+G             
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNP---RRLS---IIAESIRDGLATWDNWKHVNCD 353

Query: 131 KVEEALEFAQEELAPRGEENQSFLEEL----------ERTVALLAFEDVSNCPVGDLLDI 180
           K+   +E +   L P   E +   + L             ++L+ F+ + +      + +
Sbjct: 354 KLTTIIESSLNVLEP--AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV----MVV 407

Query: 181 SQRLKTASEVNAAILTSQSHEKDPK-----LPSLLKMLLWAQNQLDEKAAYPRI 229
             +L   S V          EK PK     +PS+   L       +E A +  I
Sbjct: 408 VNKLHKYSLV----------EKQPKESTISIPSIY--LELKVKLENEYALHRSI 449

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 41/342 (11%), Positives = 89/342 (26%), Gaps = 127/342 (37%)

Query: 3   LFWIVIRQLAEIEAMAMSKKVITREEW-----------------------EKKLNDVKI- 38
           LFW ++ +  E+    + + +    ++                       ++  ND ++ 
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 39  ------RKEDMNKL--------VMNFLVTEG----------------------------Y 56
                 R +   KL            ++ +G                            +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 57  VDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGN----VEDAIEKVNDL-----NPE- 106
           ++       E+  E    L    D     ++    N    +     ++  L         
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 107 --ILDT--NPQLF--FHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERT 160
             +L    N + +  F+L  + L+   R  +V + L  A        + +   L   E  
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILL-TTRFKQVTDFLS-AATTTHISLDHHSMTLTPDE-V 303

Query: 161 VALLAFEDVSNCPVGDL---------LDIS---------------------QRLKTASEV 190
            +LL      +C   DL           +S                      +L T  E 
Sbjct: 304 KSLLL--KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 191 NAAILTSQSH----------EKDPKLPSLLKMLLWAQNQLDE 222
           +  +L    +               +P++L  L+W      +
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 31/232 (13%), Positives = 79/232 (34%), Gaps = 49/232 (21%)

Query: 19  MSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGY-VDAAEKFRMESGTEPDIDLAT 77
           M K ++++EE    ++ + + K+ ++  +  F        +  +KF +E     +     
Sbjct: 41  MPKSILSKEE----IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF-VEEVLRINYKF-- 93

Query: 78  ITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLF--FHLQQQRLIELIRNGKVEEA 135
           +   +  ++          IE+ + L       + Q+F  +++ + +    +R      A
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLY-----NDNQVFAKYNVSRLQPYLKLRQ-----A 143

Query: 136 LEFAQEE---------------LAPRGEENQSFLEELERTVALLAFEDVSNCP-VGDLLD 179
           L   +                 +A     +     +++  +  L   ++ NC     +L+
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL---NLKNCNSPETVLE 200

Query: 180 ISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDE---KAAYPR 228
           + Q+L    + N    +  S   + KL      +   Q +L        Y  
Sbjct: 201 MLQKLLYQIDPNWTSRSDHS--SNIKLR-----IHSIQAELRRLLKSKPYEN 245

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	242
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	95.27
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	94.64
2nxp_A	156	Transcription initiation factor TFIID subunit 5; t	87.9
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	87.32
2d68_A	82	FOP, FGFR1OP; alpha helical bundle, dimer, cell cy	83.26

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=95.27  E-value=0.018  Score=40.85  Aligned_cols=54  Identities=15%  Similarity=0.287  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHH
Q 026196           40 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEK   99 (242)
Q Consensus        40 ~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~   99 (242)
                      +.+|++-|++||..+||.+++.+|.+|++++.. +..     .....-+++.+|...+..
T Consensus        10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~-~~~-----~~ky~gLLEKKWTSViRL   63 (88)
T 1uuj_A           10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMN-EEL-----DKKYAGLLEKKWTSVIRL   63 (88)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC-HHH-----HHHHTTHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC-chh-----hhhhhhhhhhhHHHHHHH
Confidence            468999999999999999999999999988643 111     012334566666655544

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=94.64  E-value=0.033  Score=39.72  Aligned_cols=34  Identities=29%  Similarity=0.491  Sum_probs=31.6

Q ss_pred             CCCHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCC
Q 026196           37 KIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE   70 (242)
Q Consensus        37 ~~~~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~   70 (242)
                      +++.+++|.||.-||...||..||-+|.+|+++.
T Consensus         2 sitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~   35 (90)
T 2xtc_A            2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS   35 (90)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence            5678999999999999999999999999999875

>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1

Probab=87.90  E-value=0.7  Score=36.05  Aligned_cols=78  Identities=17%  Similarity=0.042  Sum_probs=50.1

Q ss_pred             HHHHHHhhChhhhhcCcchhhhhHHHHHHHHHhcCChHHHHHHHHHhhcccccCCHHHHHHHHHHhhhhhccCCCCCccc
Q 026196           96 AIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG  175 (242)
Q Consensus        96 Ai~~i~~~~p~l~~~~~~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l~~~~~~~~~~~~~l~~~~~LL~~~~~~~sp~~  175 (242)
                      -..|++.........-..+.|=+.++-|++||.+|...+|-+|.+++-.-+...+   .+.++.+.++..-.+..+.++.
T Consensus        34 L~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~---~~~i~~L~~i~~~~~l~~n~~~  110 (156)
T 2nxp_A           34 LKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYY---QDDLRVLSSLTKKEHMKGNETM  110 (156)
T ss_dssp             HHHHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGG---HHHHHHHHTCCSHHHHTTCGGG
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHH---HHHHHHHhcCCCHHHHhhcHHH
Confidence            3567666432222222678999999999999999999999999997766554333   4566665554433333333433


Q ss_pred             c
Q 026196          176 D  176 (242)
Q Consensus       176 ~  176 (242)
                      .
T Consensus       111 ~  111 (156)
T 2nxp_A          111 L  111 (156)
T ss_dssp             G
T ss_pred             H
Confidence            3

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=87.32  E-value=0.11  Score=45.81  Aligned_cols=54  Identities=15%  Similarity=0.282  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHH
Q 026196           40 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEK   99 (242)
Q Consensus        40 ~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~   99 (242)
                      +++++++|++||..+||.+++.+|.+|.+++....      .......+.+++|+..++.
T Consensus         8 ~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~~------~~~~~~~~~~~~w~~~~~l   61 (410)
T 1vyh_C            8 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEE------LDKKYAGLLEKKWTSVIRL   61 (410)
T ss_dssp             ------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCcc------hhhhhhchhhhhhhheeeH
Confidence            67899999999999999999999999998754221      1223455677888777664

>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}

Probab=83.26  E-value=1.3  Score=30.81  Aligned_cols=30  Identities=23%  Similarity=0.122  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHhCCC
Q 026196           41 EDMNKLVMNFLVTEGYVDAAEKFRMESGTE   70 (242)
Q Consensus        41 ~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~   70 (242)
                      ..++.||.+||...||.=|...|..|+|.+
T Consensus        19 rLi~~LVrEyLef~~l~~TlsVf~pEs~l~   48 (82)
T 2d68_A           19 RLVASLVAEFLQFFNLDFTLAVFQPETSTL   48 (82)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence            568899999999999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	242
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	95.52
d2nxpa1	149	TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId	89.31

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.52  E-value=0.0066  Score=40.28  Aligned_cols=32  Identities=22%  Similarity=0.578  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCC
Q 026196           40 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEP   71 (242)
Q Consensus        40 ~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~   71 (242)
                      +.+|++-|++||..+||.+++.+|.+|+++..
T Consensus         7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~   38 (76)
T d1uuja_           7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDM   38 (76)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCC
Confidence            57899999999999999999999999998863

>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.31  E-value=0.24  Score=36.66  Aligned_cols=111  Identities=13%  Similarity=0.062  Sum_probs=62.5

Q ss_pred             HHHHhhChhhhhcCcchhhhhHHHHHHHHHhcCChHHHHHHHHHhhcccccCCHHHHHHHHHHhhhhhccCCCCCccccc
Q 026196           98 EKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDL  177 (242)
Q Consensus        98 ~~i~~~~p~l~~~~~~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l~~~~~~~~~~~~~l~~~~~LL~~~~~~~sp~~~l  177 (242)
                      .|+...-......-..+.|=+...-|++||.+|+..+|..|.+++-.-+...+   ...++.+.++..-.+..+.|....
T Consensus        29 ~wv~~sld~yK~EL~~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~---~~~I~~L~~i~~~~~l~~n~~~~~  105 (149)
T d2nxpa1          29 HFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYY---QDDLRVLSSLTKKEHMKGNETMLD  105 (149)
T ss_dssp             HHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGG---HHHHHHHHTCCSHHHHTTCGGGGG
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHH---HHHHHHHHcCCCHHHHhhhHHHHH
Confidence            45555432222222568999999999999999999999999998765554333   566777655544443334443332


Q ss_pred             c-ChhhHHHHHHHHHHHHHhhCCCCCCCcHHHHHH
Q 026196          178 L-DISQRLKTASEVNAAILTSQSHEKDPKLPSLLK  211 (242)
Q Consensus       178 ~-~~~~r~~la~~vn~~il~~~g~~~~s~Le~l~k  211 (242)
                      + +.+-+-.+....-..++.++.-...+.+-.+++
T Consensus       106 ~r~nKy~I~ms~~s~~lLl~~L~~~~~~~il~Ii~  140 (149)
T d2nxpa1         106 FRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQ  140 (149)
T ss_dssp             GCGGGSEEEEEHHHHHHHHHHHTTSTTCHHHHHHH
T ss_pred             HhCCCeEEEecHHHHHHHHHHHHhCCChHHHHHHH
Confidence            2 223333333333333444433223444444444