Citrus Sinensis ID: 026210

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
Protein Sequence
MTEIVNSSAMTVASATGEASVSSPGSQIQVIPPTQKKKRNLPGMPDPDSEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEESARTRTPAIEGNPNAKTVVSSPPPPPLTPSTGVVSPGLSIQSSGTN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccHHccccHHHHHccccccccccccccccccccHHHHHHHHcccccHHHHcccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEccccccccccccccccccccccccccccccccccccccccccccEEEEcccHHHcccccEEEEEccccccccHHHHHHHccccccHHHHccccccccEEEEEcccccccccccHHHHHcHHHHHHHHHccccccccEEccccccEEEHHHHHHHHHHccccccEcccccEEcccccHHHHHHHHHHccHHHccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MTEIVNSSAMTVasatgeasvsspgsqiqvipptqkkkrnlpgmpdpdsevialspktllATNRFVCEICNkgfqrdqnlqlhrrghnlpwklkqrnskevrkkvyvcpestcvhhnparalgdltgikkhfsrkhgekkykcercskkyaVQSDWKAHMktcgtreykcdcgtifsrrdsfITHRAFCDALAEEsartrtpaiegnpnaktvvsspppppltpstgvvspglsiqssgtn
Flexible Loop (DISEMBL)
mteivnssAMTVASAtgeasvsspgsqiqvipptqkkkrnlpGMPDPDSEVIALSPKTLLATNRFVCEICNKGfqrdqnlqlhrrghnlpwklkqrnskevRKKVYVcpestcvhhnparalgdltGIKKHfsrkhgekkykcercskkyavqsdwkahMKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEESartrtpaiegnpnaktvvsspppppltpstgvvspglsiqssgtn
Low Complexity Region (SEG)
MTEIVNSSAMTVASATGEASVSSPGSQIQVIPPTQKKKRNLPGMPDPDSEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEESARTRTPAIEGNPNAKtvvsspppppltpstgvvspGLSIQSSGTN
Disordered region (IsUnstruct)
***************************************************IALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTIFSRRDSFITHRAFCDALA************************************************
Disordered Region (DISOPRED)
********************************************PDPDSEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQ*****VRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEE**********************************************
Disordered Region (DISEMBL)
****************************QVIPPTQKKKRNLPGMPDPDSEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKK************CERCSKKYAVQSDWKAHMKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEESARTRTPAIEGNPN***************STGVVSPG*********
Disordered Region (DISPRO)
**************************************RNLPGMPDPDSEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEE**********************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTEIVNSSAMTVASATGEASVSSPGSQIQVIPPTQKKKRNLPGMPDPDSEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEESARTRTPAIEGNPNAKTVVSSPPPPPLTPSTGVVSPGLSIQSSGTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	241	2.2.26 [Sep-21-2011]
Q9ZWA6	506	Zinc finger protein MAGPI	no	no	0.692	0.330	0.868	1e-89
Q9FFH3	466	Zinc finger protein NUTCR	no	no	0.780	0.403	0.760	1e-86
Q700D2	503	Zinc finger protein JACKD	no	no	0.676	0.324	0.847	1e-84
Q9C8N5	499	Protein SENSITIVE TO PROT	no	no	0.668	0.322	0.338	1e-21
Q943I6	522	Zinc finger protein STOP1	no	no	0.614	0.283	0.357	4e-21
Q2QX40	465	Zinc finger protein STAR3	no	no	0.572	0.296	0.339	2e-19
Q8VWG3	303	Protein TRANSPARENT TESTA	no	no	0.543	0.432	0.333	4e-15
O43313	823	ATM interactor OS=Homo sa	yes	no	0.331	0.097	0.353	7e-11
Q6P9S1	818	ATM interactor OS=Mus mus	yes	no	0.331	0.097	0.353	1e-10
Q8BXX2	756	Zinc finger and BTB domai	no	no	0.634	0.202	0.284	1e-09

>sp|Q9ZWA6|MGP_ARATH Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1

 Score =  329 bits (843), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 145/167 (86%), Positives = 158/167 (94%)

Query: 32  PPTQKKKRNLPGMPDPDSEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPW 91
           PP  KKKRNLPG PDP++EVIALSPKTL+ATNRF+CEIC KGFQRDQNLQLHRRGHNLPW
Sbjct: 37  PPLVKKKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPW 96

Query: 92  KLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYA 151
           KLKQR SKEVRK+VYVCPE +CVHH+P RALGDLTGIKKHF RKHGEKK+KCE+C+K+YA
Sbjct: 97  KLKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYA 156

Query: 152 VQSDWKAHMKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEESAR 198
           VQSDWKAH KTCGTREY+CDCGTIFSRRDSFITHRAFCDALAEE+AR
Sbjct: 157 VQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETAR 203

Probable transcription factor that regulates tissue boundaries and asymmetric cell division. Might be involved in the sequestration of 'SHORT-ROOT' to the nucleus.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFH3|NUC_ARATH Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1

 Score =  319 bits (818), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 146/192 (76%), Positives = 167/192 (86%), Gaps = 4/192 (2%)

Query: 11  TVASATGEASVSSPGS----QIQVIPPTQKKKRNLPGMPDPDSEVIALSPKTLLATNRFV 66
           T++S +G A   S  +    +  + PP  KKKRNLPG PDP++EVIALSP TL+ATNRF+
Sbjct: 8   TISSGSGFAQPQSSSTLDHDESLINPPLVKKKRNLPGNPDPEAEVIALSPTTLMATNRFL 67

Query: 67  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLT 126
           CE+C KGFQRDQNLQLHRRGHNLPWKLKQR SKEVRK+VYVCPE TCVHH+ +RALGDLT
Sbjct: 68  CEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHSSRALGDLT 127

Query: 127 GIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTIFSRRDSFITHR 186
           GIKKHF RKHGEKK+ CE+C+K+YAVQSDWKAH KTCGTREY+CDCGTIFSRRDSFITHR
Sbjct: 128 GIKKHFCRKHGEKKWTCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHR 187

Query: 187 AFCDALAEESAR 198
           AFCDALAEE+A+
Sbjct: 188 AFCDALAEETAK 199

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D2|JKD_ARATH Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1

 Score =  312 bits (800), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 139/164 (84%), Positives = 153/164 (93%), Gaps = 1/164 (0%)

Query: 36  KKKRNLPGMPDPDSEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQ 95
           KKKRN PG PDPD++VIALSP TL+ATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQ
Sbjct: 53  KKKRNQPGTPDPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQ 112

Query: 96  RNSKEV-RKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQS 154
           R+ +EV +KKVY+CP  TCVHH+ +RALGDLTGIKKH+SRKHGEKK+KCE+CSKKYAVQS
Sbjct: 113 RSKQEVIKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQS 172

Query: 155 DWKAHMKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEESAR 198
           DWKAH KTCGTREYKCDCGT+FSR+DSFITHRAFCDAL EE AR
Sbjct: 173 DWKAHAKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEEGAR 216

Probable transcription factor that regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action. Required for radial patterning and stem cell maintenance. Counteracted by 'MAGPIE' (MGP).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8N5|STOP1_ARATH Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1

 Score =  103 bits (256), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 91/186 (48%), Gaps = 25/186 (13%)

Query: 44  MPDPDSEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRK 103
           +P    E++ L  + +LA +   C IC KGF+RD NL++H RGH   +K     +K  ++
Sbjct: 223 LPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKE 282

Query: 104 KV----------YVCPESTC---VHHNPARALGDLTGIKKHFSRKHGEKKYKCERC-SKK 149
            V          Y CP   C     H   + L  +  +K H+ R H +K + C RC +KK
Sbjct: 283 SVPGSEPMLIKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKK 342

Query: 150 YAVQSDWKAHMKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEESARTRTPAI---EG 206
           ++V +D K H K CG  ++ C CGT FSR+D    H A          +  TPAI   E 
Sbjct: 343 FSVIADLKTHEKHCGKNKWLCSCGTTFSRKDKLFGHIAL--------FQGHTPAIPLEET 394

Query: 207 NPNAKT 212
            P+A T
Sbjct: 395 KPSAST 400

Probable transcription factor. Plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q943I6|STOP1_ORYSJ Zinc finger protein STOP1 homolog OS=Oryza sativa subsp. japonica GN=Os01g0871200 PE=2 SV=1

 Score =  101 bits (252), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 83/165 (50%), Gaps = 17/165 (10%)

Query: 37  KKRNLPGMPDPDSEVIA-LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQ 95
           ++ NLP    P S V+  L  + +LA +   C IC KGF+RD NL++H RGH   +K   
Sbjct: 257 ERENLP----PGSYVVLQLEKEEILAPHTHFCLICGKGFKRDANLRMHMRGHGDEYKTAA 312

Query: 96  RNSKEVRKKV--------YVCPESTCV---HHNPARALGDLTGIKKHFSRKHGEKKYKCE 144
             +K  +           Y CP   C     H   + L  +  +K H+ R H +K Y C 
Sbjct: 313 ALAKPSKDSSLESAPVTRYSCPYVGCKRNKEHKKFQPLKTILCVKNHYKRSHCDKSYTCS 372

Query: 145 RC-SKKYAVQSDWKAHMKTCGTREYKCDCGTIFSRRDSFITHRAF 188
           RC +KK++V +D K H K CG  ++ C CGT FSR+D    H A 
Sbjct: 373 RCNTKKFSVIADLKTHEKHCGRDKWLCSCGTTFSRKDKLFGHVAL 417

Probable transcription factor that may be involved in aluminum tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QX40|ART1_ORYSJ Zinc finger protein STAR3 OS=Oryza sativa subsp. japonica GN=STAR3 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 15/153 (9%)

Query: 51  VIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWK-----------LKQRNSK 99
           V+ L    +LA +   C IC KGF+RD NL++H RGH   +K            +     
Sbjct: 215 VLQLEEDEILAPHTHFCGICGKGFKRDANLRMHMRGHGDEYKSAAALAKPPPPPEGEEQP 274

Query: 100 EVRKKVYVCPESTCVH---HNPARALGDLTGIKKHFSRKHGEKKYKCERC-SKKYAVQSD 155
              ++ Y CP + C     H   + L  +  +K H+ R H EK++ C RC +K+++V +D
Sbjct: 275 PQPERRYSCPHAGCKRNRMHASFQPLKTILCVKNHYKRSHCEKRHVCGRCGAKRFSVMAD 334

Query: 156 WKAHMKTCGTREYKCDCGTIFSRRDSFITHRAF 188
            K H K CG   + C CGT FSR+D    H A 
Sbjct: 335 LKTHEKHCGRDRWLCSCGTSFSRKDKLFAHVAL 367

Transcriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. Binds to the promoter of STAR1 and regulates transcript expression of STAR1 STAR2 and ART1 required for Al tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VWG3|TT1_ARATH Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana GN=TT1 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 68/141 (48%), Gaps = 10/141 (7%)

Query: 57  KTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKV------YVCPE 110
           + L+    F C +C K F R  NLQ+H  GH   ++    + K  + +       Y C E
Sbjct: 137 QILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAMLGIPCYCCVE 196

Query: 111 STCVH--HNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREY 168
               H  H  ++ L D   ++ H+ RKHG K + C  C K  AV+ DW+ H K CG R +
Sbjct: 197 GCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLCGKLLAVKGDWRTHEKNCGKR-W 255

Query: 169 KCDCGTIFSRRDSFITH-RAF 188
            C CG+ F  + S   H +AF
Sbjct: 256 VCVCGSDFKHKRSLKDHVKAF 276

May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat.

Arabidopsis thaliana (taxid: 3702)

>sp|O43313|ATMIN_HUMAN ATM interactor OS=Homo sapiens GN=ATMIN PE=1 SV=2

 Score = 67.8 bits (164), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 104 KVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTC 163
           K Y CP   C    P R     + +K+HF + H EKK+KC +CS  Y  + D K H + C
Sbjct: 129 KFYCCPIEGC-PRGPERPFSQFSLVKQHFMKMHAEKKHKCSKCSNSYGTEWDLKRHAEDC 187

Query: 164 GTREYKCDCGTIFSRRDSFITH 185
           G + ++C CG  ++ R +  +H
Sbjct: 188 G-KTFRCTCGCPYASRTALQSH 208

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Homo sapiens (taxid: 9606)

>sp|Q6P9S1|ATMIN_MOUSE ATM interactor OS=Mus musculus GN=Atmin PE=2 SV=2

 Score = 66.6 bits (161), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 104 KVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTC 163
           K Y CP   C    P R     + +K+HF + H EKK+KC +CS  Y  + D K H + C
Sbjct: 125 KFYCCPIKGC-PRGPDRPFSQFSLVKQHFMKMHAEKKHKCSKCSNSYGTEWDLKRHEEDC 183

Query: 164 GTREYKCDCGTIFSRRDSFITH 185
           G + ++C CG  ++ R +  +H
Sbjct: 184 G-KTFQCTCGCPYASRTALQSH 204

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Mus musculus (taxid: 10090)

>sp|Q8BXX2|ZBT49_MOUSE Zinc finger and BTB domain-containing protein 49 OS=Mus musculus GN=Zbtb49 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 79/193 (40%), Gaps = 40/193 (20%)

Query: 6   NSSAMTVASATGEASVSSPGSQIQV------IPPTQKKKRNLPGMP----DPDSEVIALS 55
           N  A    SA  E +V   GSQ         + P   ++  LPG P    DP     AL 
Sbjct: 325 NGLARREESAAKEDAVERAGSQTAEEKGRGELGPESSREEELPGAPASWEDPSQ---ALQ 381

Query: 56  PKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVH 115
           P+      ++ CE+C K F+   NL+LH+R H               +K + C  + C  
Sbjct: 382 PQ-----KQYACELCGKPFKHPSNLELHKRSH-------------TGEKPFEC--NICGK 421

Query: 116 HNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CG 173
           H           ++ H  R  GEK Y CE C K++A   D + H+    G + + CD CG
Sbjct: 422 H-----FSQAGNLQTHLRRHSGEKPYICEICGKRFAASGDVQRHIIIHSGEKPHLCDTCG 476

Query: 174 TIFSRRDSFITHR 186
             FS   +   H+
Sbjct: 477 RGFSNFSNLKEHK 489

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
225458335	505	PREDICTED: uncharacterized protein LOC10	0.975	0.465	0.756	1e-101
302398689	541	C2H2L domain class transcription factor	0.987	0.439	0.762	1e-100
302142467	496	unnamed protein product [Vitis vinifera]	0.937	0.455	0.767	1e-99
359476719	506	PREDICTED: uncharacterized protein LOC10	0.863	0.411	0.812	9e-99
297735188	492	unnamed protein product [Vitis vinifera]	0.863	0.422	0.812	3e-98
427199310	514	zinc finger protein [Morella rubra]	0.846	0.396	0.791	5e-97
255538582	502	nucleic acid binding protein, putative [	0.979	0.470	0.769	1e-95
356496771	517	PREDICTED: uncharacterized protein LOC10	0.784	0.365	0.846	1e-94
356498393	525	PREDICTED: uncharacterized protein LOC10	0.867	0.398	0.775	1e-94
302398707	528	C2H2L domain class transcription factor	0.771	0.352	0.844	6e-94

>gi|225458335|ref|XP_002281605.1| PREDICTED: uncharacterized protein LOC100260826 [Vitis vinifera]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/246 (75%), Positives = 207/246 (84%), Gaps = 11/246 (4%)

Query: 1   MTEIVNSSAMTVASATGEASVSSPGSQI--QVIPPTQKKKRNLPGMPDPDSEVIALSPKT 58
           M E+  SS MTV++A+ EASV+S G+Q   Q + PT KKKRNLPG PDPD+EVIALSPKT
Sbjct: 1   MVELDISSPMTVSTASREASVTSSGNQTAPQPVAPT-KKKRNLPGTPDPDAEVIALSPKT 59

Query: 59  LLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNP 118
           L+ATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL+QR SKEVRK+VYVCPE TCVHH+P
Sbjct: 60  LMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKRVYVCPEPTCVHHDP 119

Query: 119 ARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTIFSR 178
            RALGDLTGIKKHF RKHGEKK+KCERCSKKYAVQSDWKAH+KTCGTREYKCDCGT+FSR
Sbjct: 120 TRALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHLKTCGTREYKCDCGTLFSR 179

Query: 179 RDSFITHRAFCDALAEESARTR---TPAIEGNPNAKTVVSSPPPPPLTPSTGVVSPGLSI 235
           RDSFITHRAFCDALA+ESAR +   +   E NP  +T VSS  P  L+PST V    LSI
Sbjct: 180 RDSFITHRAFCDALAQESARAQVLPSTNTEENPEIETAVSS-SPTALSPSTTV----LSI 234

Query: 236 QSSGTN 241
           QS G +
Sbjct: 235 QSPGAD 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398689|gb|ADL36639.1| C2H2L domain class transcription factor [Malus x domestica]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/253 (76%), Positives = 216/253 (85%), Gaps = 15/253 (5%)

Query: 1   MTEIVNSSA--MTVASATG-EASVSSPGSQIQVIP-PTQKKKRNLPGMPDPDSEVIALSP 56
           M E+ NSS+  +TV++A+G EAS++S   +    P P QKKKRNLPGMPDP++EVIALSP
Sbjct: 1   MGELDNSSSPLLTVSTASGGEASLTSSTHEAMTHPEPQQKKKRNLPGMPDPEAEVIALSP 60

Query: 57  KTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHH 116
            TLLATNRFVCEIC+KGFQRDQNLQLHRRGHNLPWKLKQR SKEVRK+VYVCPE++CVHH
Sbjct: 61  TTLLATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPETSCVHH 120

Query: 117 NPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTIF 176
           +P RALGDLTGIKKHF RKHGEKK+KCERCSKKYAVQSDWKAHMKTCGTREYKCDCGT+F
Sbjct: 121 HPTRALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLF 180

Query: 177 SRRDSFITHRAFCDALAEESARTRTPAI--EG--NPNAK-------TVVSSPPPPPLTPS 225
           SRRDSFITHRAFCDALAEESA+T+T  I  +G  NPN+         VV+SPPPPP TPS
Sbjct: 181 SRRDSFITHRAFCDALAEESAKTQTLVIGPDGSMNPNSNPTPSARSGVVASPPPPPHTPS 240

Query: 226 TGVVSPGLSIQSS 238
             VVSP LSIQSS
Sbjct: 241 NTVVSPALSIQSS 253

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142467|emb|CBI19670.3| unnamed protein product [Vitis vinifera]

 Score =  368 bits (945), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 182/237 (76%), Positives = 202/237 (85%), Gaps = 11/237 (4%)

Query: 10  MTVASATGEASVSSPGSQI--QVIPPTQKKKRNLPGMPDPDSEVIALSPKTLLATNRFVC 67
           MTV++A+ EASV+S G+Q   Q + PT KKKRNLPG PDPD+EVIALSPKTL+ATNRFVC
Sbjct: 1   MTVSTASREASVTSSGNQTAPQPVAPT-KKKRNLPGTPDPDAEVIALSPKTLMATNRFVC 59

Query: 68  EICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTG 127
           EICNKGFQRDQNLQLHRRGHNLPWKL+QR SKEVRK+VYVCPE TCVHH+P RALGDLTG
Sbjct: 60  EICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKRVYVCPEPTCVHHDPTRALGDLTG 119

Query: 128 IKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTIFSRRDSFITHRA 187
           IKKHF RKHGEKK+KCERCSKKYAVQSDWKAH+KTCGTREYKCDCGT+FSRRDSFITHRA
Sbjct: 120 IKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHLKTCGTREYKCDCGTLFSRRDSFITHRA 179

Query: 188 FCDALAEESARTR---TPAIEGNPNAKTVVSSPPPPPLTPSTGVVSPGLSIQSSGTN 241
           FCDALA+ESAR +   +   E NP  +T VSS  P  L+PST V    LSIQS G +
Sbjct: 180 FCDALAQESARAQVLPSTNTEENPEIETAVSS-SPTALSPSTTV----LSIQSPGAD 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476719|ref|XP_002271958.2| PREDICTED: uncharacterized protein LOC100263342 isoform 2 [Vitis vinifera]

 Score =  365 bits (937), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 169/208 (81%), Positives = 189/208 (90%)

Query: 3   EIVNSSAMTVASATGEASVSSPGSQIQVIPPTQKKKRNLPGMPDPDSEVIALSPKTLLAT 62
           ++ NSSAMTV++A+GEASVSS G+Q     P  KKKRNLPGMPDPD+EVIALSPKTL+AT
Sbjct: 4   DLDNSSAMTVSTASGEASVSSTGNQPAPPKPAPKKKRNLPGMPDPDAEVIALSPKTLMAT 63

Query: 63  NRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARAL 122
           NRFVCEICNKGFQRDQNLQLHRRGHNLPWKL+QR+SKEVRK+VYVCPE +CVHH P+RAL
Sbjct: 64  NRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPSCVHHEPSRAL 123

Query: 123 GDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTIFSRRDSF 182
           GDLTGIKKHF RKHGEKK+KC++CSKKYAVQSDWKAH K CGTREYKCDCGT+FSRRDSF
Sbjct: 124 GDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSF 183

Query: 183 ITHRAFCDALAEESARTRTPAIEGNPNA 210
           ITHRAFCDALAEESA+T+T     NPN+
Sbjct: 184 ITHRAFCDALAEESAKTQTQTAVANPNS 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735188|emb|CBI17550.3| unnamed protein product [Vitis vinifera]

 Score =  363 bits (932), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 169/208 (81%), Positives = 189/208 (90%)

Query: 3   EIVNSSAMTVASATGEASVSSPGSQIQVIPPTQKKKRNLPGMPDPDSEVIALSPKTLLAT 62
           ++ NSSAMTV++A+GEASVSS G+Q     P  KKKRNLPGMPDPD+EVIALSPKTL+AT
Sbjct: 4   DLDNSSAMTVSTASGEASVSSTGNQPAPPKPAPKKKRNLPGMPDPDAEVIALSPKTLMAT 63

Query: 63  NRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARAL 122
           NRFVCEICNKGFQRDQNLQLHRRGHNLPWKL+QR+SKEVRK+VYVCPE +CVHH P+RAL
Sbjct: 64  NRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPSCVHHEPSRAL 123

Query: 123 GDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTIFSRRDSF 182
           GDLTGIKKHF RKHGEKK+KC++CSKKYAVQSDWKAH K CGTREYKCDCGT+FSRRDSF
Sbjct: 124 GDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSF 183

Query: 183 ITHRAFCDALAEESARTRTPAIEGNPNA 210
           ITHRAFCDALAEESA+T+T     NPN+
Sbjct: 184 ITHRAFCDALAEESAKTQTQTAVANPNS 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|427199310|gb|AFY26885.1| zinc finger protein [Morella rubra]

 Score =  359 bits (921), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 167/211 (79%), Positives = 187/211 (88%), Gaps = 7/211 (3%)

Query: 13  ASATGEASVSSPGSQIQVIPPTQKKKRNLPGMPDPDSEVIALSPKTLLATNRFVCEICNK 72
           ++A+GEASVSS G+Q Q   PT KKKRNLPGMPDPD+EVIALSPKTL+ATNRFVCEICNK
Sbjct: 9   STASGEASVSSSGNQSQPPKPTAKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNK 68

Query: 73  GFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHF 132
           GFQRDQNLQLHRRGHNLPWKL+QR+SKEV+K+VYVCPE +CVHH+P+RALGDLTGIKKHF
Sbjct: 69  GFQRDQNLQLHRRGHNLPWKLRQRSSKEVKKRVYVCPEPSCVHHDPSRALGDLTGIKKHF 128

Query: 133 SRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTIFSRRDSFITHRAFCDAL 192
            RKHGEKK+KC++CSKKYAVQSDWKAH K CGTREYKCDCGT+FSRRDSFITHRAFCDAL
Sbjct: 129 CRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDAL 188

Query: 193 AEESARTRT-------PAIEGNPNAKTVVSS 216
           AEESAR +T       P  E +PN + V SS
Sbjct: 189 AEESARAQTQNQALVNPNKESDPNNQAVDSS 219

Source: Morella rubra

Species: Morella rubra

Genus: Morella

Family: Myricaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538582|ref|XP_002510356.1| nucleic acid binding protein, putative [Ricinus communis] gi|223551057|gb|EEF52543.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 190/247 (76%), Positives = 205/247 (82%), Gaps = 11/247 (4%)

Query: 3   EIVNSSAMTVASATGEASVSSPGS-QIQVIP---PTQKKKRNLPGMPDPDSEVIALSPKT 58
           E  NSS MT+++ +G    S   S   Q +P   P  KKKRNLPGMPDPD+EVIALSPKT
Sbjct: 2   EADNSSQMTLSTNSGGEGTSVVSSFSNQAVPLSLPPPKKKRNLPGMPDPDAEVIALSPKT 61

Query: 59  LLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNP 118
           LLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQR SKE  K+VYVCPE++CVHHNP
Sbjct: 62  LLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEPIKRVYVCPEASCVHHNP 121

Query: 119 ARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTIFSR 178
           ARALGDLTGIKKHF RKHGEKK+KCERCSKKYAVQSDWKAHMKTCGTREYKCDCGT+FSR
Sbjct: 122 ARALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSR 181

Query: 179 RDSFITHRAFCDALAEESARTRTPAI---EGNPNAK----TVVSSPPPPPLTPSTGVVSP 231
           RDSFITHRAFCDALAEESAR +T      EG+ N        V+SPPPPPLTPST VVSP
Sbjct: 182 RDSFITHRAFCDALAEESARAQTLTFMDKEGSNNTNMKSVVAVASPPPPPLTPSTTVVSP 241

Query: 232 GLSIQSS 238
           G+S QSS
Sbjct: 242 GVSAQSS 248

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496771|ref|XP_003517239.1| PREDICTED: uncharacterized protein LOC100806404 [Glycine max]

 Score =  352 bits (902), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 160/189 (84%), Positives = 177/189 (93%)

Query: 12  VASATGEASVSSPGSQIQVIPPTQKKKRNLPGMPDPDSEVIALSPKTLLATNRFVCEICN 71
           V++A+GEASVSS G+      PT KKKRNLPGMPDPD+EVIALSPKTL+ATNRFVCEICN
Sbjct: 8   VSTASGEASVSSSGNLTVPPKPTTKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICN 67

Query: 72  KGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKH 131
           KGFQRDQNLQLHRRGHNLPWKL+QR+SKEVRK+VYVCPE TCVHH+P+RALGDLTGIKKH
Sbjct: 68  KGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKH 127

Query: 132 FSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTIFSRRDSFITHRAFCDA 191
           F RKHGEKK+KC++CSKKYAVQSDWKAH K CGTREYKCDCGT+FSRRDSFITHRAFCDA
Sbjct: 128 FCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDA 187

Query: 192 LAEESARTR 200
           LAEESAR++
Sbjct: 188 LAEESARSQ 196

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498393|ref|XP_003518037.1| PREDICTED: uncharacterized protein LOC100814444 [Glycine max] gi|356498399|ref|XP_003518040.1| PREDICTED: uncharacterized protein LOC100818698 [Glycine max]

 Score =  351 bits (901), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 166/214 (77%), Positives = 187/214 (87%), Gaps = 5/214 (2%)

Query: 12  VASATGEA-SVSSPGSQIQVIPPTQKKKRNLPGMPDPDSEVIALSPKTLLATNRFVCEIC 70
            ++A+GEA SVSS G+Q +  P   KKKRNLPGMPDP++EVIALSPKTLLATNRFVCEIC
Sbjct: 8   ASTASGEAASVSSSGNQTK--PAAPKKKRNLPGMPDPEAEVIALSPKTLLATNRFVCEIC 65

Query: 71  NKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKK 130
           NKGFQRDQNLQLHRRGHNLPWKL+QR+SKEVRK+VYVCPE TCVHH+P+RALGDLTGIKK
Sbjct: 66  NKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKK 125

Query: 131 HFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTIFSRRDSFITHRAFCD 190
           HF RKHGEKK+KC++CSKKYAVQSDWKAH K CGTREYKCDCGT+FSRRDSFITHRAFCD
Sbjct: 126 HFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGTREYKCDCGTVFSRRDSFITHRAFCD 185

Query: 191 ALAEESARTRTPA--IEGNPNAKTVVSSPPPPPL 222
           ALAEE+AR+ T    I  N +   +  SPPP P+
Sbjct: 186 ALAEENARSHTVVKDISENDSKVLIGDSPPPQPV 219

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398707|gb|ADL36648.1| C2H2L domain class transcription factor [Malus x domestica]

 Score =  349 bits (895), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 157/186 (84%), Positives = 174/186 (93%)

Query: 14  SATGEASVSSPGSQIQVIPPTQKKKRNLPGMPDPDSEVIALSPKTLLATNRFVCEICNKG 73
           +A+GEASVSS G+Q     P  KKKRNLPGMPDPD+EVIALSPKTLLATNRFVCEIC+KG
Sbjct: 10  TASGEASVSSSGNQTAPPKPATKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICSKG 69

Query: 74  FQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFS 133
           FQRDQNLQLHRRGHNLPWKL+QR+SKEV+K+VYVCPE++CVHH+P+RALGDLTGIKKHF 
Sbjct: 70  FQRDQNLQLHRRGHNLPWKLRQRSSKEVKKRVYVCPEASCVHHDPSRALGDLTGIKKHFC 129

Query: 134 RKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTIFSRRDSFITHRAFCDALA 193
           RKHGEKK+KC++CSKKYAVQSDWKAH K CGTREYKCDCGT+FSRRDSFITHRAFCDALA
Sbjct: 130 RKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALA 189

Query: 194 EESART 199
           EESAR 
Sbjct: 190 EESARV 195

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
TAIR|locus:2173624	500	IDD1 "AT5G66730" [Arabidopsis	0.784	0.378	0.820	2.6e-86
TAIR|locus:2101739	452	IDD2 "AT3G50700" [Arabidopsis	0.813	0.433	0.783	2.4e-85
TAIR|locus:2024193	506	MGP "AT1G03840" [Arabidopsis t	0.692	0.330	0.868	1.3e-82
TAIR|locus:2167608	466	NUC "AT5G44160" [Arabidopsis t	0.780	0.403	0.760	3.2e-81
TAIR|locus:2205672	455	IDD7 "AT1G55110" [Arabidopsis	0.796	0.421	0.740	2.9e-80
TAIR|locus:2132397	402	IDD12 "AT4G02670" [Arabidopsis	0.838	0.502	0.721	4.7e-80
TAIR|locus:2204503	467	AT1G14580 "AT1G14580" [Arabido	0.709	0.366	0.789	3.3e-79
TAIR|locus:2078262	446	AT3G45260 "AT3G45260" [Arabido	0.676	0.365	0.835	4.2e-79
TAIR|locus:2143543	503	JKD "AT5G03150" [Arabidopsis t	0.771	0.369	0.760	5.4e-79
TAIR|locus:2051688	516	IDD4 "indeterminate(ID)-domain	0.701	0.327	0.786	8.7e-79

TAIR|locus:2173624 IDD1 "AT5G66730" [Arabidopsis thaliana (taxid:3702)]

 Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
 Identities = 155/189 (82%), Positives = 172/189 (91%)

Query:    13 ASATGEASVSSPGSQIQVIPPTQKKKRNLPGMPDPDSEVIALSPKTLLATNRFVCEICNK 72
             ++ +G+ASVSS G+Q        KKKRNLPGMPDPD+EVIALSPKTL+ATNRFVCEICNK
Sbjct:     9 STVSGDASVSSTGNQNLTPKSVGKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNK 68

Query:    73 GFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHF 132
             GFQRDQNLQLHRRGHNLPWKL+QR++KEVRKKVYVCP S CVHH+P+RALGDLTGIKKHF
Sbjct:    69 GFQRDQNLQLHRRGHNLPWKLRQRSTKEVRKKVYVCPVSGCVHHDPSRALGDLTGIKKHF 128

Query:   133 SRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTIFSRRDSFITHRAFCDAL 192
              RKHGEKK+KCE+CSKKYAVQSDWKAH K CGT+EYKCDCGT+FSRRDSFITHRAFCDAL
Sbjct:   129 CRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDAL 188

Query:   193 AEESARTRT 201
             AEESA+  T
Sbjct:   189 AEESAKNHT 197

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009937 "regulation of gibberellic acid mediated signaling pathway" evidence=IMP

GO:0010029 "regulation of seed germination" evidence=IMP

GO:0010431 "seed maturation" evidence=IMP

TAIR|locus:2101739 IDD2 "AT3G50700" [Arabidopsis thaliana (taxid:3702)]

 Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
 Identities = 156/199 (78%), Positives = 180/199 (90%)

Query:    13 ASATGEASVS--SPGSQIQVIPPTQKKKRNLPGMPDPDSEVIALSPKTLLATNRFVCEIC 70
             ++ +GEASVS  S G+Q  +   T KKKRNLPGMPDP+SEVIALSPKTLLATNRFVCEIC
Sbjct:     9 STVSGEASVSISSTGNQNPLPNSTGKKKRNLPGMPDPESEVIALSPKTLLATNRFVCEIC 68

Query:    71 NKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKK 130
             NKGFQRDQNLQLHRRGHNLPWKL+Q+++KEV+KKVYVCPE +CVHH+P+RALGDLTGIKK
Sbjct:    69 NKGFQRDQNLQLHRRGHNLPWKLRQKSNKEVKKKVYVCPEVSCVHHDPSRALGDLTGIKK 128

Query:   131 HFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTIFSRRDSFITHRAFCD 190
             HF RKHGEKK+KC++CSKKYAVQSDWKAH K CGT+EYKCDCGT+FSRRDSFITHRAFCD
Sbjct:   129 HFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCD 188

Query:   191 ALAEESARTR-TPAIEGNP 208
             ALAEE+AR+  + + + NP
Sbjct:   189 ALAEENARSHHSQSKKQNP 207

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2024193 MGP "AT1G03840" [Arabidopsis thaliana (taxid:3702)]

 Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
 Identities = 145/167 (86%), Positives = 158/167 (94%)

Query:    32 PPTQKKKRNLPGMPDPDSEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPW 91
             PP  KKKRNLPG PDP++EVIALSPKTL+ATNRF+CEIC KGFQRDQNLQLHRRGHNLPW
Sbjct:    37 PPLVKKKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPW 96

Query:    92 KLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYA 151
             KLKQR SKEVRK+VYVCPE +CVHH+P RALGDLTGIKKHF RKHGEKK+KCE+C+K+YA
Sbjct:    97 KLKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYA 156

Query:   152 VQSDWKAHMKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEESAR 198
             VQSDWKAH KTCGTREY+CDCGTIFSRRDSFITHRAFCDALAEE+AR
Sbjct:   157 VQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETAR 203

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2167608 NUC "AT5G44160" [Arabidopsis thaliana (taxid:3702)]

 Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
 Identities = 146/192 (76%), Positives = 167/192 (86%)

Query:    11 TVASATGEASVSSPGS----QIQVIPPTQKKKRNLPGMPDPDSEVIALSPKTLLATNRFV 66
             T++S +G A   S  +    +  + PP  KKKRNLPG PDP++EVIALSP TL+ATNRF+
Sbjct:     8 TISSGSGFAQPQSSSTLDHDESLINPPLVKKKRNLPGNPDPEAEVIALSPTTLMATNRFL 67

Query:    67 CEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLT 126
             CE+C KGFQRDQNLQLHRRGHNLPWKLKQR SKEVRK+VYVCPE TCVHH+ +RALGDLT
Sbjct:    68 CEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHSSRALGDLT 127

Query:   127 GIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTIFSRRDSFITHR 186
             GIKKHF RKHGEKK+ CE+C+K+YAVQSDWKAH KTCGTREY+CDCGTIFSRRDSFITHR
Sbjct:   128 GIKKHFCRKHGEKKWTCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHR 187

Query:   187 AFCDALAEESAR 198
             AFCDALAEE+A+
Sbjct:   188 AFCDALAEETAK 199

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0010260 "organ senescence" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2205672 IDD7 "AT1G55110" [Arabidopsis thaliana (taxid:3702)]

 Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
 Identities = 154/208 (74%), Positives = 175/208 (84%)

Query:     6 NSSAMTVASATGEASVSS------PGSQIQ-------VIPPTQ-KKKRNLPGMPDPDSEV 51
             N S +T AS   +ASVSS       GS I         +P +  K+KRN PG PDP++EV
Sbjct:    20 NMSNLTSASGD-QASVSSGNRTETSGSNINQHHQEQCFVPQSSLKRKRNQPGNPDPEAEV 78

Query:    52 IALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEV-RKKVYVCPE 110
             +ALSPKTL+ATNRF+CE+CNKGFQRDQNLQLH+RGHNLPWKLKQR++K+V RKKVYVCPE
Sbjct:    79 MALSPKTLMATNRFICEVCNKGFQRDQNLQLHKRGHNLPWKLKQRSNKDVVRKKVYVCPE 138

Query:   111 STCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKC 170
               CVHH+P+RALGDLTGIKKHF RKHGEKK+KCE+CSKKYAVQSDWKAH KTCGT+EYKC
Sbjct:   139 PGCVHHHPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTKEYKC 198

Query:   171 DCGTIFSRRDSFITHRAFCDALAEESAR 198
             DCGT+FSRRDSFITHRAFCDALAEESAR
Sbjct:   199 DCGTLFSRRDSFITHRAFCDALAEESAR 226

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2132397 IDD12 "AT4G02670" [Arabidopsis thaliana (taxid:3702)]

 Score = 804 (288.1 bits), Expect = 4.7e-80, P = 4.7e-80
 Identities = 150/208 (72%), Positives = 173/208 (83%)

Query:     6 NSSAMTVASATGEASV-SSPGSQIQVIPPTQKKKRNLPGMPDPDSEVIALSPKTLLATNR 64
             N++  T+   +G  +V SS  +  +   P  KKKR LPG PDPD+EVIALSPKTLLATNR
Sbjct:    24 NNTLSTIQEFSGFHNVISSVCTHTETHKP--KKKRGLPGNPDPDAEVIALSPKTLLATNR 81

Query:    65 FVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEV-RKKVYVCPESTCVHHNPARALG 123
             FVCEICNKGFQRDQNLQLHRRGHNLPWKLKQ+N+KE  +KKVYVCPE+ C HH+P+RALG
Sbjct:    82 FVCEICNKGFQRDQNLQLHRRGHNLPWKLKQKNTKEQQKKKVYVCPETNCAHHHPSRALG 141

Query:   124 DLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTIFSRRDSFI 183
             DLTGIKKHF RKHGEKK+KCE+CSK YAVQSDWKAH K CGTR+Y+CDCGT+FSR+D+FI
Sbjct:   142 DLTGIKKHFCRKHGEKKWKCEKCSKFYAVQSDWKAHTKICGTRDYRCDCGTLFSRKDTFI 201

Query:   184 THRAFCDALAEESARTRTPAIEG--NPN 209
             THRAFCDALAEESAR  + +     NPN
Sbjct:   202 THRAFCDALAEESARLHSTSSSNLTNPN 229

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2204503 AT1G14580 "AT1G14580" [Arabidopsis thaliana (taxid:3702)]

 Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
 Identities = 135/171 (78%), Positives = 160/171 (93%)

Query:    31 IPPTQKKKRNLPGMPDPDSEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLP 90
             + P  KK+RN PG P+PD+EVIALSPKT++ATNRF+CE+CNKGFQR+QNLQLHRRGHNLP
Sbjct:    48 VAPPPKKRRNQPGNPNPDAEVIALSPKTIMATNRFLCEVCNKGFQREQNLQLHRRGHNLP 107

Query:    91 WKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKY 150
             WKLKQ+++KEVR+KVY+CPE +CVHH+PARALGDLTGIKKH+ RKHGEKK+KC++CSK+Y
Sbjct:   108 WKLKQKSNKEVRRKVYLCPEPSCVHHDPARALGDLTGIKKHYYRKHGEKKWKCDKCSKRY 167

Query:   151 AVQSDWKAHMKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEESARTRT 201
             AVQSDWKAH KTCGT+EY+CDCGTIFSRRDS+ITHRAFCDAL +ESAR  T
Sbjct:   168 AVQSDWKAHSKTCGTKEYRCDCGTIFSRRDSYITHRAFCDALIQESARNPT 218

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2078262 AT3G45260 "AT3G45260" [Arabidopsis thaliana (taxid:3702)]

 Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
 Identities = 137/164 (83%), Positives = 155/164 (94%)

Query:    36 KKKRNLPGMPDPDSEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQ 95
             K+KRNLPG PDPD+EVIALSP +L+ TNRF+CE+CNKGF+RDQNLQLHRRGHNLPWKLKQ
Sbjct:    39 KRKRNLPGNPDPDAEVIALSPNSLMTTNRFICEVCNKGFKRDQNLQLHRRGHNLPWKLKQ 98

Query:    96 RNSKE-VRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQS 154
             R +KE V+KKVY+CPE TCVHH+PARALGDLTGIKKHFSRKHGEKK+KC++CSKKYAV S
Sbjct:    99 RTNKEQVKKKVYICPEKTCVHHDPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVMS 158

Query:   155 DWKAHMKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEESAR 198
             DWKAH K CGT+EY+CDCGT+FSR+DSFITHRAFCDALAEESAR
Sbjct:   159 DWKAHSKICGTKEYRCDCGTLFSRKDSFITHRAFCDALAEESAR 202

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2143543 JKD "AT5G03150" [Arabidopsis thaliana (taxid:3702)]

 Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
 Identities = 143/188 (76%), Positives = 162/188 (86%)

Query:    22 SSPGSQIQVIPPTQKKKRNLPGMPDPDSEVIALSPKTLLATNRFVCEICNKGFQRDQNLQ 81
             S+P    +    + KKKRN PG PDPD++VIALSP TL+ATNRFVCEICNKGFQRDQNLQ
Sbjct:    39 SNPNPNAKPNSSSAKKKRNQPGTPDPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQ 98

Query:    82 LHRRGHNLPWKLKQRNSKEV-RKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKK 140
             LHRRGHNLPWKLKQR+ +EV +KKVY+CP  TCVHH+ +RALGDLTGIKKH+SRKHGEKK
Sbjct:    99 LHRRGHNLPWKLKQRSKQEVIKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKK 158

Query:   141 YKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEESARTR 200
             +KCE+CSKKYAVQSDWKAH KTCGTREYKCDCGT+FSR+DSFITHRAFCDAL EE AR  
Sbjct:   159 WKCEKCSKKYAVQSDWKAHAKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEEGARMS 218

Query:   201 TPAIEGNP 208
             + +   NP
Sbjct:   219 SLS-NNNP 225

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010075 "regulation of meristem growth" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0048364 "root development" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IMP

GO:0045604 "regulation of epidermal cell differentiation" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2051688 IDD4 "indeterminate(ID)-domain 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
 Identities = 133/169 (78%), Positives = 159/169 (94%)

Query:    33 PTQKKKRNLPGMPDPDSEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWK 92
             P  KK+RN PG P+PD+EV+ALSPKTL+ATNRF+C++CNKGFQR+QNLQLHRRGHNLPWK
Sbjct:    51 PPPKKRRNQPGNPNPDAEVVALSPKTLMATNRFICDVCNKGFQREQNLQLHRRGHNLPWK 110

Query:    93 LKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAV 152
             LKQ+++KEV++KVY+CPE TCVHH+P+RALGDLTGIKKH+ RKHGEKK+KCE+CSK+YAV
Sbjct:   111 LKQKSTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCEKCSKRYAV 170

Query:   153 QSDWKAHMKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEESARTRT 201
             QSDWKAH KTCGT+EY+CDCGTIFSRRDS+ITHRAFCDAL +E+AR  T
Sbjct:   171 QSDWKAHSKTCGTKEYRCDCGTIFSRRDSYITHRAFCDALIQETARNPT 219

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	241
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.95
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.91
KOG3576	267	consensus Ovo and related transcription factors [T	99.86
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.75
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.73
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.68
KOG3608	467	consensus Zn finger proteins [General function pre	99.62
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.6
KOG3608	467	consensus Zn finger proteins [General function pre	99.57
KOG3576	267	consensus Ovo and related transcription factors [T	99.54
PLN03086	567	PRLI-interacting factor K; Provisional	99.41
PHA00733	128	hypothetical protein	99.3
PHA00733	128	hypothetical protein	99.12
PHA02768	55	hypothetical protein; Provisional	99.07
KOG3993	500	consensus Transcription factor (contains Zn finger	98.97
PHA02768	55	hypothetical protein; Provisional	98.81
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.77
PLN03086	567	PRLI-interacting factor K; Provisional	98.76
KOG3993	500	consensus Transcription factor (contains Zn finger	98.69
PHA00732	79	hypothetical protein	98.4
PHA00616	44	hypothetical protein	98.4
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.38
PHA00616	44	hypothetical protein	98.28
PHA00732	79	hypothetical protein	98.16
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.06
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.03
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.99
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.93
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.84
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.82
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.75
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.69
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.66
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.66
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.63
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.53
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	97.32
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.15
smart00355	26	ZnF_C2H2 zinc finger.	97.1
smart00355	26	ZnF_C2H2 zinc finger.	97.05
KOG1146	1406	consensus Homeobox protein [General function predi	96.98
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.84
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.8
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.67
PRK04860	160	hypothetical protein; Provisional	96.5
PRK04860	160	hypothetical protein; Provisional	96.48
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.39
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.37
COG5236	493	Uncharacterized conserved protein, contains RING Z	96.33
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	96.29
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	95.91
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.58
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	95.02
COG5048	467	FOG: Zn-finger [General function prediction only]	94.62
COG5236	493	Uncharacterized conserved protein, contains RING Z	94.6
COG5048	467	FOG: Zn-finger [General function prediction only]	94.4
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	94.38
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.2
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.16
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	94.07
KOG1146	1406	consensus Homeobox protein [General function predi	93.8
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	93.75
KOG2893	341	consensus Zn finger protein [General function pred	93.72
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	93.34
KOG2893	341	consensus Zn finger protein [General function pred	93.15
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	93.13
KOG4377	480	consensus Zn-finger protein [General function pred	93.08
COG4049	65	Uncharacterized protein containing archaeal-type C	92.55
KOG2186	276	consensus Cell growth-regulating nucleolar protein	92.46
COG4049	65	Uncharacterized protein containing archaeal-type C	92.41
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	91.99
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	90.44
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	87.24
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	85.01
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	82.77
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	82.65
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	81.54
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	81.24
KOG2675	480	consensus Adenylate cyclase-associated protein (CA	80.84
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	80.68

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.95  E-value=1.8e-28  Score=189.68  Aligned_cols=135  Identities=24%  Similarity=0.426  Sum_probs=122.4

Q ss_pred             CccccCCCCCCCCCCCccccccCccccC---CCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCC
Q 026210           33 PTQKKKRNLPGMPDPDSEVIALSPKTLL---ATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCP  109 (241)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~  109 (241)
                      ...+..+..++........|..|.++|-   ..+.+.|++|||.|.....|+.|+++|.               -++.|.
T Consensus       127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~---------------l~c~C~  191 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT---------------LPCECG  191 (279)
T ss_pred             cCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC---------------CCcccc
Confidence            3455577788888888888999988775   4678999999999999999999999996               678999


Q ss_pred             CCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHHh-CCcceecC-CCCCcCCcchHHHHHH
Q 026210          110 ESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTC-GTREYKCD-CGTIFSRRDSFITHRA  187 (241)
Q Consensus       110 ~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~~-~~k~~~C~-C~k~f~~~~~L~~H~~  187 (241)
                      +|       |+.|...+-|+.|+++|||||||.|..|+|.|..+++|+.||++| +.|.|.|. |+|.|...+-|.+|..
T Consensus       192 iC-------GKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  192 IC-------GKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSE  264 (279)
T ss_pred             cc-------cccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhh
Confidence            99       999999999999999999999999999999999999999999995 78999999 9999999999999987


Q ss_pred             hc
Q 026210          188 FC  189 (241)
Q Consensus       188 ~~  189 (241)
                      .-
T Consensus       265 S~  266 (279)
T KOG2462|consen  265 SA  266 (279)
T ss_pred             hc
Confidence            53

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.91  E-value=1.7e-24  Score=167.67  Aligned_cols=114  Identities=22%  Similarity=0.509  Sum_probs=104.5

Q ss_pred             CCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCc
Q 026210           60 LATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEK  139 (241)
Q Consensus        60 ~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek  139 (241)
                      .....|+|..||+.+.+.++|.+|.++|..-          ..++.+.|.+|       ++.|.....|+.|+++|+  -
T Consensus       126 ~~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~----------~s~ka~~C~~C-------~K~YvSmpALkMHirTH~--l  186 (279)
T KOG2462|consen  126 AKHPRYKCPECGKSYSTSSNLSRHKQTHRSL----------DSKKAFSCKYC-------GKVYVSMPALKMHIRTHT--L  186 (279)
T ss_pred             ccCCceeccccccccccccccchhhcccccc----------cccccccCCCC-------CceeeehHHHhhHhhccC--C
Confidence            3556899999999999999999999999621          14678999999       999999999999999997  6


Q ss_pred             eeecccccccccchhhHHHHHHH-hCCcceecC-CCCCcCCcchHHHHHHhccCc
Q 026210          140 KYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITHRAFCDAL  192 (241)
Q Consensus       140 ~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~~~~L~~H~~~~~~~  192 (241)
                      +++|.+|||.|.+...|+.|+|+ +|||||.|. |+|.|...++|+.||++|..+
T Consensus       187 ~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~  241 (279)
T KOG2462|consen  187 PCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDV  241 (279)
T ss_pred             CcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCC
Confidence            79999999999999999999999 799999999 999999999999999999764

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.86  E-value=9.1e-22  Score=145.52  Aligned_cols=117  Identities=24%  Similarity=0.560  Sum_probs=107.4

Q ss_pred             ccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhccccC
Q 026210           58 TLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHG  137 (241)
Q Consensus        58 ~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~  137 (241)
                      +......|.|.+|+|.|.....|.+|++.|.             ..+.|.|..|       ++.|.+...|++|+++|+|
T Consensus       111 sssd~d~ftCrvCgK~F~lQRmlnrh~kch~-------------~vkr~lct~c-------gkgfndtfdlkrh~rthtg  170 (267)
T KOG3576|consen  111 SSSDQDSFTCRVCGKKFGLQRMLNRHLKCHS-------------DVKRHLCTFC-------GKGFNDTFDLKRHTRTHTG  170 (267)
T ss_pred             CCCCCCeeeeehhhhhhhHHHHHHHHhhhcc-------------HHHHHHHhhc-------cCcccchhhhhhhhccccC
Confidence            3345678999999999999999999999998             7789999999       9999999999999999999


Q ss_pred             CceeecccccccccchhhHHHHHHH-hC-----------CcceecC-CCCCcCCcchHHHHHHhccCchh
Q 026210          138 EKKYKCERCSKKYAVQSDWKAHMKT-CG-----------TREYKCD-CGTIFSRRDSFITHRAFCDALAE  194 (241)
Q Consensus       138 ek~~~C~~C~k~f~~~~~L~~H~~~-~~-----------~k~~~C~-C~k~f~~~~~L~~H~~~~~~~~~  194 (241)
                      .+||+|..|+|.|.++-.|..|.+. ||           +|.|.|+ ||..-.....+..|++.||....
T Consensus       171 vrpykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Sp  240 (267)
T KOG3576|consen  171 VRPYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSP  240 (267)
T ss_pred             ccccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCH
Confidence            9999999999999999999999987 75           4779999 99999999999999999997543

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.75  E-value=1.1e-19  Score=158.78  Aligned_cols=80  Identities=21%  Similarity=0.503  Sum_probs=73.1

Q ss_pred             cccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHHhCCcc-----eecC----CCCC
Q 026210          105 VYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTRE-----YKCD----CGTI  175 (241)
Q Consensus       105 ~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~~~~k~-----~~C~----C~k~  175 (241)
                      +.+|-+|       .+.+.-.+.|+.|.++|+|||||+|.+||+.|.++.+|+.||-.|..++     |.|.    |-+.
T Consensus       605 PNqCiiC-------~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~k  677 (958)
T KOG1074|consen  605 PNQCIIC-------LRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKK  677 (958)
T ss_pred             ccceeee-------eecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhccc
Confidence            4689999       9999999999999999999999999999999999999999999986654     7774    8899


Q ss_pred             cCCcchHHHHHHhccC
Q 026210          176 FSRRDSFITHRAFCDA  191 (241)
Q Consensus       176 f~~~~~L~~H~~~~~~  191 (241)
                      |...-.|..|+++|.+
T Consensus       678 ftn~V~lpQhIriH~~  693 (958)
T KOG1074|consen  678 FTNAVTLPQHIRIHLG  693 (958)
T ss_pred             ccccccccceEEeecC
Confidence            9999999999999974

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.73  E-value=1.6e-18  Score=151.62  Aligned_cols=60  Identities=23%  Similarity=0.500  Sum_probs=54.5

Q ss_pred             eecccccccccchhhHHHHHHH-hCCcceecC-CCCCcCCcchHHHHHHhccCchhhhcccC
Q 026210          141 YKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITHRAFCDALAEESARTR  200 (241)
Q Consensus       141 ~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~~~~L~~H~~~~~~~~~~~~~~~  200 (241)
                      ..|.+||+.|...+.|..|+++ +|+|+|.|. |++.|..+..|+.||.+|+-....+.++.
T Consensus       880 h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKvHMgtH~w~q~~srrG~  941 (958)
T KOG1074|consen  880 HVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKVHMGTHMWVQPPSRRGP  941 (958)
T ss_pred             hhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhhhhccccccCCCccCCC
Confidence            4699999999999999999999 699999999 99999999999999999998866666533

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.68  E-value=1.6e-17  Score=143.29  Aligned_cols=111  Identities=21%  Similarity=0.520  Sum_probs=98.8

Q ss_pred             CccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhcccc-------
Q 026210           64 RFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKH-------  136 (241)
Q Consensus        64 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~-------  136 (241)
                      ...|.+|.+.+.+...|+.|++..+.           ..+.-|.|..|       ...|.+...|.+||.+|.       
T Consensus       210 lltcpycdrgykrltslkeHikyrhe-----------kne~nfsC~lC-------sytFAyRtQLErhm~~hkpg~dqa~  271 (1007)
T KOG3623|consen  210 LLTCPYCDRGYKRLTSLKEHIKYRHE-----------KNEPNFSCMLC-------SYTFAYRTQLERHMQLHKPGGDQAI  271 (1007)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHh-----------hCCCCCcchhh-------hhhhhhHHHHHHHHHhhcCCCcccc
Confidence            47899999999999999999886541           14567899999       999999999999999885       


Q ss_pred             ------CCceeecccccccccchhhHHHHHHH-hCCcceecC-CCCCcCCcchHHHHHHhccCc
Q 026210          137 ------GEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITHRAFCDAL  192 (241)
Q Consensus       137 ------~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~~~~L~~H~~~~~~~  192 (241)
                            +.|.|+|.+|||.|..+..|+.|+|+ .|||||.|. |+|+|....++..||-....+
T Consensus       272 sltqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSSKKCI  335 (1007)
T KOG3623|consen  272 SLTQSALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSSKKCI  335 (1007)
T ss_pred             cccchhhhccccccccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCcccccccccchh
Confidence                  24789999999999999999999999 599999999 999999999999999876655

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.62  E-value=5.1e-17  Score=129.78  Aligned_cols=147  Identities=16%  Similarity=0.256  Sum_probs=114.7

Q ss_pred             CCCCCCCccccccCccccCCCCCccccccccccCChhHHHHHhhhcCC----Cchhhhcch-----------hhhcCccc
Q 026210           42 PGMPDPDSEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNL----PWKLKQRNS-----------KEVRKKVY  106 (241)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~----~~~~~~~~~-----------~~~~~~~~  106 (241)
                      +.....+...+..|.++|.+++...|+.||..|.+...|-.|++..+.    ++.|.....           .......|
T Consensus       185 Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~y  264 (467)
T KOG3608|consen  185 CTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCY  264 (467)
T ss_pred             hhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhcc
Confidence            344556777888999999999999999999999999999999876652    222322111           11234678


Q ss_pred             cCCCCCcccCCCCCcCCChhhHhhhhcc-ccCCceeecccccccccchhhHHHHHHHhCCcceecC---CCCCcCCcchH
Q 026210          107 VCPESTCVHHNPARALGDLTGIKKHFSR-KHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCD---CGTIFSRRDSF  182 (241)
Q Consensus       107 ~C~~C~c~~~~~~~~f~~~~~l~~H~~~-h~~ek~~~C~~C~k~f~~~~~L~~H~~~~~~k~~~C~---C~k~f~~~~~L  182 (241)
                      +|+.|       .......+.|..|++. |...|||+|+.|++.|.+.+.|.+|..+|.+-.|.|+   |...|++...|
T Consensus       265 kCplC-------dmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~~y~C~h~~C~~s~r~~~q~  337 (467)
T KOG3608|consen  265 KCPLC-------DMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSKTVYQCEHPDCHYSVRTYTQM  337 (467)
T ss_pred             ccccc-------ccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhccccceecCCCCCcHHHHHHHHH
Confidence            88888       7888888888888774 6678899999999999999999999888887889995   99999999999


Q ss_pred             HHHHHhccCchhh
Q 026210          183 ITHRAFCDALAEE  195 (241)
Q Consensus       183 ~~H~~~~~~~~~~  195 (241)
                      ++|++.+|....+
T Consensus       338 ~~H~~evhEg~np  350 (467)
T KOG3608|consen  338 RRHFLEVHEGNNP  350 (467)
T ss_pred             HHHHHHhccCCCC
Confidence            9998888754443

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.60  E-value=2e-16  Score=136.73  Aligned_cols=78  Identities=23%  Similarity=0.602  Sum_probs=50.5

Q ss_pred             CccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-CCCCcCCcc
Q 026210          103 KKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRD  180 (241)
Q Consensus       103 ~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~~~  180 (241)
                      ...|.|+.|       ++.|...+.|.+|.--|+|.|||+|.+|.|.|..+..|..|+|. .|||||.|+ |+|+|....
T Consensus       892 ~gmyaCDqC-------DK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSG  964 (1007)
T KOG3623|consen  892 DGMYACDQC-------DKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSG  964 (1007)
T ss_pred             cccchHHHH-------HHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhccccc
Confidence            455666666       66666666666666666666666666666666666666666666 366666666 666666666


Q ss_pred             hHHHHHH
Q 026210          181 SFITHRA  187 (241)
Q Consensus       181 ~L~~H~~  187 (241)
                      ++..||.
T Consensus       965 SYSQHMN  971 (1007)
T KOG3623|consen  965 SYSQHMN  971 (1007)
T ss_pred             chHhhhc
Confidence            6666654

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.57  E-value=1.2e-15  Score=121.94  Aligned_cols=154  Identities=21%  Similarity=0.307  Sum_probs=120.6

Q ss_pred             CCCCCCCCCCccccccCc--cccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhc--------------chhhhc
Q 026210           39 RNLPGMPDPDSEVIALSP--KTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQR--------------NSKEVR  102 (241)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~--------------~~~~~~  102 (241)
                      +..++.-+.....+..|.  ++....++|.|.+|.|.|.+...|+.|+..|...++|...              .-.+..
T Consensus       210 Cp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCdmtc~~~ssL~~H~r~rHs~  289 (467)
T KOG3608|consen  210 CPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCDMTCSSASSLTTHIRYRHSK  289 (467)
T ss_pred             cchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhcccccccccCCCChHHHHHHHHhhhcc
Confidence            344444444555555553  3455667899999999999999999998888654443211              112346


Q ss_pred             CccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeeccc--ccccccchhhHHHHHHH-h-C--CcceecC-CCCC
Q 026210          103 KKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCER--CSKKYAVQSDWKAHMKT-C-G--TREYKCD-CGTI  175 (241)
Q Consensus       103 ~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~--C~k~f~~~~~L~~H~~~-~-~--~k~~~C~-C~k~  175 (241)
                      .++|+|+.|       .+.|...+.|.+|..+|. +-.|.|..  |...|....+|++|++. | |  .-+|.|- |++.
T Consensus       290 dkpfKCd~C-------d~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~  361 (467)
T KOG3608|consen  290 DKPFKCDEC-------DTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRF  361 (467)
T ss_pred             CCCccccch-------hhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhh
Confidence            799999999       999999999999999998 78899988  99999999999999998 6 3  3579999 9999


Q ss_pred             cCCcchHHHHHHhccCchhhhcccC
Q 026210          176 FSRRDSFITHRAFCDALAEESARTR  200 (241)
Q Consensus       176 f~~~~~L~~H~~~~~~~~~~~~~~~  200 (241)
                      |.+-.+|..|++..|+..-++.-.+
T Consensus       362 ft~G~~L~~HL~kkH~f~~PsGh~R  386 (467)
T KOG3608|consen  362 FTSGKSLSAHLMKKHGFRLPSGHKR  386 (467)
T ss_pred             hccchhHHHHHHHhhcccCCCCCCc
Confidence            9999999999999998876665433

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.54  E-value=1.4e-15  Score=112.94  Aligned_cols=110  Identities=23%  Similarity=0.410  Sum_probs=99.4

Q ss_pred             CccccCCCCCCCCCCCccccccCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCC
Q 026210           33 PTQKKKRNLPGMPDPDSEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPEST  112 (241)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~  112 (241)
                      ......+..|+..+.-...+.+|.+-|...+.|-|..||+.|.+...|++|+++|+             +-++|+|..| 
T Consensus       114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rtht-------------gvrpykc~~c-  179 (267)
T KOG3576|consen  114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHT-------------GVRPYKCSLC-  179 (267)
T ss_pred             CCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhcccc-------------Cccccchhhh-
Confidence            34555778888888888889999999999999999999999999999999999999             8999999999 


Q ss_pred             cccCCCCCcCCChhhHhhhhccccC-----------CceeecccccccccchhhHHHHHHH
Q 026210          113 CVHHNPARALGDLTGIKKHFSRKHG-----------EKKYKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       113 c~~~~~~~~f~~~~~l~~H~~~h~~-----------ek~~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                            ++.|.+...|..|.+.-+|           +|.|.|+.||.+-.....+..|++.
T Consensus       180 ------~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~  234 (267)
T KOG3576|consen  180 ------EKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKL  234 (267)
T ss_pred             ------hHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHh
Confidence                  9999999999999875443           5789999999999999999999998

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.41  E-value=4.6e-13  Score=116.18  Aligned_cols=105  Identities=21%  Similarity=0.444  Sum_probs=90.0

Q ss_pred             CCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCcee
Q 026210           62 TNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKY  141 (241)
Q Consensus        62 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~  141 (241)
                      ++.+.|+.|++.|. ...|..|++.|+               +++.|+ |       ++.+ ....|..|+.+|..++++
T Consensus       451 ~~H~~C~~Cgk~f~-~s~LekH~~~~H---------------kpv~Cp-C-------g~~~-~R~~L~~H~~thCp~Kpi  505 (567)
T PLN03086        451 KNHVHCEKCGQAFQ-QGEMEKHMKVFH---------------EPLQCP-C-------GVVL-EKEQMVQHQASTCPLRLI  505 (567)
T ss_pred             ccCccCCCCCCccc-hHHHHHHHHhcC---------------CCccCC-C-------CCCc-chhHHHhhhhccCCCCce
Confidence            45678999999996 678999999875               679999 8       7655 668999999999999999


Q ss_pred             ecccccccccc----------hhhHHHHHHHhCCcceecC-CCCCcCCcchHHHHHHhccCc
Q 026210          142 KCERCSKKYAV----------QSDWKAHMKTCGTREYKCD-CGTIFSRRDSFITHRAFCDAL  192 (241)
Q Consensus       142 ~C~~C~k~f~~----------~~~L~~H~~~~~~k~~~C~-C~k~f~~~~~L~~H~~~~~~~  192 (241)
                      .|..|++.|..          ...|..|+..+|.+++.|. |++.|+.+ .|..|+...|..
T Consensus       506 ~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk~Vrlr-dm~~H~~~~h~~  566 (567)
T PLN03086        506 TCRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGRSVMLK-EMDIHQIAVHQK  566 (567)
T ss_pred             eCCCCCCccccCccccchhhhhhhHHHHHHhcCCcceEccccCCeeeeh-hHHHHHHHhhcC
Confidence            99999999952          4589999999999999999 99999765 689999887753

>PHA00733 hypothetical protein

Probab=99.30  E-value=2.1e-12  Score=92.23  Aligned_cols=82  Identities=16%  Similarity=0.310  Sum_probs=68.0

Q ss_pred             cCccccCCCCCcccCCCCCcCCChhhHhh------hhccccCCceeecccccccccchhhHHHHHHHhCCcceecC-CCC
Q 026210          102 RKKVYVCPESTCVHHNPARALGDLTGIKK------HFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCD-CGT  174 (241)
Q Consensus       102 ~~~~~~C~~C~c~~~~~~~~f~~~~~l~~------H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~~~~k~~~C~-C~k  174 (241)
                      ..+.+.|.+|       ...|.....|..      |+. +.++++|.|..||+.|.....|..|++.+ +.+|.|. |++
T Consensus        37 ~~~~~~~~~~-------~~~~~~~~~l~~~~~l~~~~~-~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h-~~~~~C~~CgK  107 (128)
T PHA00733         37 EQKRLIRAVV-------KTLIYNPQLLDESSYLYKLLT-SKAVSPYVCPLCLMPFSSSVSLKQHIRYT-EHSKVCPVCGK  107 (128)
T ss_pred             hhhhHHHHHH-------hhhccChhhhcchHHHHhhcc-cCCCCCccCCCCCCcCCCHHHHHHHHhcC-CcCccCCCCCC
Confidence            4678899998       666665554444      433 34589999999999999999999999975 4679999 999


Q ss_pred             CcCCcchHHHHHHhccCc
Q 026210          175 IFSRRDSFITHRAFCDAL  192 (241)
Q Consensus       175 ~f~~~~~L~~H~~~~~~~  192 (241)
                      .|.....|.+|+...|++
T Consensus       108 ~F~~~~sL~~H~~~~h~~  125 (128)
T PHA00733        108 EFRNTDSTLDHVCKKHNI  125 (128)
T ss_pred             ccCCHHHHHHHHHHhcCc
Confidence            999999999999999875

>PHA00733 hypothetical protein

Probab=99.12  E-value=5.3e-11  Score=85.06  Aligned_cols=96  Identities=16%  Similarity=0.187  Sum_probs=75.5

Q ss_pred             cccccCccccCCCCCccccccccccCChhHHHHH--hhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhh
Q 026210           50 EVIALSPKTLLATNRFVCEICNKGFQRDQNLQLH--RRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTG  127 (241)
Q Consensus        50 ~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H--~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~  127 (241)
                      +.+..........+++.|.+|.+.|.....|..|  ++.|.          .....++|.|..|       ++.|.....
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~----------~~~~~kPy~C~~C-------gk~Fss~s~   88 (128)
T PHA00733         26 EELKRYHSLTPEQKRLIRAVVKTLIYNPQLLDESSYLYKLL----------TSKAVSPYVCPLC-------LMPFSSSVS   88 (128)
T ss_pred             HHhhhhhcCChhhhhHHHHHHhhhccChhhhcchHHHHhhc----------ccCCCCCccCCCC-------CCcCCCHHH
Confidence            3444444444567899999999999887777665  22221          0015789999999       999999999


Q ss_pred             HhhhhccccCCceeecccccccccchhhHHHHHHH-hC
Q 026210          128 IKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CG  164 (241)
Q Consensus       128 l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~  164 (241)
                      |..|++.|  +.+|.|.+|++.|.....|..|+.. |+
T Consensus        89 L~~H~r~h--~~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         89 LKQHIRYT--EHSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             HHHHHhcC--CcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            99999987  4579999999999999999999998 75

>PHA02768 hypothetical protein; Provisional

Probab=99.07  E-value=6.6e-11  Score=70.10  Aligned_cols=42  Identities=24%  Similarity=0.559  Sum_probs=32.2

Q ss_pred             eecccccccccchhhHHHHHHHhCCcceecC-CCCCcCCcchHH
Q 026210          141 YKCERCSKKYAVQSDWKAHMKTCGTREYKCD-CGTIFSRRDSFI  183 (241)
Q Consensus       141 ~~C~~C~k~f~~~~~L~~H~~~~~~k~~~C~-C~k~f~~~~~L~  183 (241)
                      |.|++||+.|.+.+.|..|+++|. ++|+|. |++.|.+.+.|.
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~-k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN-TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC-CcccCCcccceecccceeE
Confidence            678888888888888888888865 677887 888887776654

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.97  E-value=4.8e-11  Score=97.99  Aligned_cols=151  Identities=15%  Similarity=0.178  Sum_probs=110.3

Q ss_pred             cccCCCCCCCCCCCccccccCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhh--------hc----------
Q 026210           35 QKKKRNLPGMPDPDSEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLK--------QR----------   96 (241)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~--------~~----------   96 (241)
                      .+.-|++|.....|.-.+..|...-.-.--|+|++|+|.|+...||..|.|+|.......        +.          
T Consensus       266 GdyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea  345 (500)
T KOG3993|consen  266 GDYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEA  345 (500)
T ss_pred             HHHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhc
Confidence            334557777777888888888776666667999999999999999999999996221111        00          


Q ss_pred             --chhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCc-----------------------------------
Q 026210           97 --NSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEK-----------------------------------  139 (241)
Q Consensus        97 --~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek-----------------------------------  139 (241)
                        .........|.|.+|       ++.|.....|++|+.+|...-                                   
T Consensus       346 ~rsg~dss~gi~~C~~C-------~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g  418 (500)
T KOG3993|consen  346 ERSGDDSSSGIFSCHTC-------GKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHG  418 (500)
T ss_pred             cccCCcccCceeecHHh-------hhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccc
Confidence              111123347999999       999999999999988875210                                   


Q ss_pred             -----------eeecccccccccchhhHHHHHHH-hCCcceecC-CCCCcCCcchHHHHHHhccCc
Q 026210          140 -----------KYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITHRAFCDAL  192 (241)
Q Consensus       140 -----------~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~~~~L~~H~~~~~~~  192 (241)
                                 ...|..|+-.+..+..--.|.+. +-+..|.|. |.-.|.....|.+|+...|..
T Consensus       419 ~~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hps  484 (500)
T KOG3993|consen  419 DEVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHPS  484 (500)
T ss_pred             cceeeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcChH
Confidence                       01356666666666555555555 566779999 999999999999999998854

>PHA02768 hypothetical protein; Provisional

Probab=98.81  E-value=1.3e-09  Score=64.58  Aligned_cols=44  Identities=14%  Similarity=0.317  Sum_probs=40.1

Q ss_pred             cccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHH
Q 026210          105 VYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWK  157 (241)
Q Consensus       105 ~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~  157 (241)
                      -|.|++|       ++.|.....|..|+++|+  ++|+|..|++.|.+.+.|.
T Consensus         5 ~y~C~~C-------GK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPIC-------GEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchh-------CCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            4799999       999999999999999998  7899999999999887653

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.77  E-value=2.9e-09  Score=53.98  Aligned_cols=26  Identities=35%  Similarity=0.875  Sum_probs=21.2

Q ss_pred             hHhhhhccccCCceeecccccccccc
Q 026210          127 GIKKHFSRKHGEKKYKCERCSKKYAV  152 (241)
Q Consensus       127 ~l~~H~~~h~~ek~~~C~~C~k~f~~  152 (241)
                      +|..|+++|+++++|.|.+|++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            47788888888888888888888863

...

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.76  E-value=1.1e-08  Score=89.23  Aligned_cols=113  Identities=19%  Similarity=0.364  Sum_probs=81.8

Q ss_pred             CccccccccccCChhHHHHHhhhcCC-Cc-----hhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhccccC
Q 026210           64 RFVCEICNKGFQRDQNLQLHRRGHNL-PW-----KLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHG  137 (241)
Q Consensus        64 ~~~C~~C~~~f~~~~~L~~H~~~h~~-~~-----~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~  137 (241)
                      .-.|..|.+.... .+|..|...-.. ..     .|.........++.+.|..|       ++.|. ...|..|+..|+ 
T Consensus       407 ~V~C~NC~~~i~l-~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~C-------gk~f~-~s~LekH~~~~H-  476 (567)
T PLN03086        407 TVECRNCKHYIPS-RSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKC-------GQAFQ-QGEMEKHMKVFH-  476 (567)
T ss_pred             eEECCCCCCccch-hHHHHHHhhCCCcceeCCcccccceeeccccccCccCCCC-------CCccc-hHHHHHHHHhcC-
Confidence            3468888876544 556777643220 01     12222223335677899999       88885 678999999986 


Q ss_pred             CceeecccccccccchhhHHHHHHH-hCCcceecC-CCCCcCC----------cchHHHHHHhc
Q 026210          138 EKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSR----------RDSFITHRAFC  189 (241)
Q Consensus       138 ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~----------~~~L~~H~~~~  189 (241)
                       +++.|. ||+.| .+..|..|+++ ..++++.|. |++.|..          .+.|..|...+
T Consensus       477 -kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C  537 (567)
T PLN03086        477 -EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC  537 (567)
T ss_pred             -CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc
Confidence             789999 99765 66899999988 689999999 9999952          35788998875

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.69  E-value=5.8e-09  Score=85.97  Aligned_cols=113  Identities=14%  Similarity=0.340  Sum_probs=75.7

Q ss_pred             CccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceee-
Q 026210           64 RFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYK-  142 (241)
Q Consensus        64 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~-  142 (241)
                      -|.|..|...|.+...|.+|.-...             ....|+|++|       ++.|.-..+|..|.++|.-..--. 
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~RI-------------V~vEYrCPEC-------~KVFsCPANLASHRRWHKPR~eaa~  326 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPRI-------------VHVEYRCPEC-------DKVFSCPANLASHRRWHKPRPEAAK  326 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCee-------------EEeeecCCcc-------cccccCchhhhhhhcccCCchhhhh
Confidence            4899999999999999999965443             4567999999       999999999999999996321100 


Q ss_pred             cc-cc-cccccchhhHHHHHHH---hCCcceecC-CCCCcCCcchHHHHHHhccCchhhh
Q 026210          143 CE-RC-SKKYAVQSDWKAHMKT---CGTREYKCD-CGTIFSRRDSFITHRAFCDALAEES  196 (241)
Q Consensus       143 C~-~C-~k~f~~~~~L~~H~~~---~~~k~~~C~-C~k~f~~~~~L~~H~~~~~~~~~~~  196 (241)
                      -. .= .+.-......+.-.|.   ..+..|.|. |+|.|++...|++|+.+|+......
T Consensus       327 a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k  386 (500)
T KOG3993|consen  327 AGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAK  386 (500)
T ss_pred             cCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccch
Confidence            00 00 0000011111111111   123479999 9999999999999999887654443

>PHA00732 hypothetical protein

Probab=98.40  E-value=1.6e-07  Score=61.06  Aligned_cols=45  Identities=27%  Similarity=0.508  Sum_probs=27.4

Q ss_pred             cccCCCCCcccCCCCCcCCChhhHhhhhcc-ccCCceeecccccccccchhhHHHHHHH
Q 026210          105 VYVCPESTCVHHNPARALGDLTGIKKHFSR-KHGEKKYKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       105 ~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~-h~~ek~~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      +|.|..|       ++.|.....|..|++. |.+   +.|..||+.|.   .|..|+++
T Consensus         1 py~C~~C-------gk~F~s~s~Lk~H~r~~H~~---~~C~~CgKsF~---~l~~H~~~   46 (79)
T PHA00732          1 MFKCPIC-------GFTTVTLFALKQHARRNHTL---TKCPVCNKSYR---RLNQHFYS   46 (79)
T ss_pred             CccCCCC-------CCccCCHHHHHHHhhcccCC---CccCCCCCEeC---Chhhhhcc
Confidence            3566666       6666666666666663 432   46666666665   35566654

>PHA00616 hypothetical protein

Probab=98.40  E-value=1.3e-07  Score=53.35  Aligned_cols=32  Identities=16%  Similarity=0.428  Sum_probs=22.1

Q ss_pred             eeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          140 KYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       140 ~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      +|.|..||+.|..++.|..|++. ||++++.|+
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence            46677777777777777777776 677766664

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.38  E-value=1.9e-07  Score=47.30  Aligned_cols=24  Identities=46%  Similarity=1.041  Sum_probs=21.5

Q ss_pred             hHHHHHHH-hCCcceecC-CCCCcCC
Q 026210          155 DWKAHMKT-CGTREYKCD-CGTIFSR  178 (241)
Q Consensus       155 ~L~~H~~~-~~~k~~~C~-C~k~f~~  178 (241)
                      +|.+|+++ +|+|+|.|+ |++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            58899999 699999999 9999964

...

>PHA00616 hypothetical protein

Probab=98.28  E-value=2.9e-07  Score=51.96  Aligned_cols=34  Identities=12%  Similarity=0.252  Sum_probs=30.6

Q ss_pred             CccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC
Q 026210           64 RFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        64 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      +|+|..||+.|....+|..|++.|+             +++++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~h-------------g~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVH-------------KQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhc-------------CCCccceeE
Confidence            5899999999999999999999999             778887754

>PHA00732 hypothetical protein

Probab=98.16  E-value=1.8e-06  Score=56.13  Aligned_cols=49  Identities=22%  Similarity=0.429  Sum_probs=40.0

Q ss_pred             CccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhccccC
Q 026210           64 RFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHG  137 (241)
Q Consensus        64 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~  137 (241)
                      +|.|..||+.|.+..+|..|++.++             .  .+.|+.|       ++.|.   .|..|..++..
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H-------------~--~~~C~~C-------gKsF~---~l~~H~~~~~~   49 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNH-------------T--LTKCPVC-------NKSYR---RLNQHFYSQYD   49 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhccc-------------C--CCccCCC-------CCEeC---ChhhhhcccCC
Confidence            5899999999999999999998533             1  2579999       89987   57888876654

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.06  E-value=5.6e-06  Score=49.91  Aligned_cols=47  Identities=19%  Similarity=0.440  Sum_probs=27.8

Q ss_pred             eecccccccccchhhHHHHHHH-hC--CcceecC-CCCCcCCcchHHHHHHhcc
Q 026210          141 YKCERCSKKYAVQSDWKAHMKT-CG--TREYKCD-CGTIFSRRDSFITHRAFCD  190 (241)
Q Consensus       141 ~~C~~C~k~f~~~~~L~~H~~~-~~--~k~~~C~-C~k~f~~~~~L~~H~~~~~  190 (241)
                      |.|++|++. .....|..|... |.  .+.+.|. |...+..  +|..|+..+|
T Consensus         3 f~CP~C~~~-~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~~--~l~~Hl~~~H   53 (54)
T PF05605_consen    3 FTCPYCGKG-FSESSLVEHCEDEHRSESKNVVCPICSSRVTD--NLIRHLNSQH   53 (54)
T ss_pred             cCCCCCCCc-cCHHHHHHHHHhHCcCCCCCccCCCchhhhhh--HHHHHHHHhc
Confidence            566666663 334566666665 52  2456666 6665442  6667766655

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.03  E-value=2.5e-06  Score=41.79  Aligned_cols=23  Identities=43%  Similarity=0.908  Sum_probs=21.4

Q ss_pred             ccccccccccCChhHHHHHhhhc
Q 026210           65 FVCEICNKGFQRDQNLQLHRRGH   87 (241)
Q Consensus        65 ~~C~~C~~~f~~~~~L~~H~~~h   87 (241)
                      |.|+.|++.|....+|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            78999999999999999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.99  E-value=1.9e-06  Score=68.97  Aligned_cols=51  Identities=33%  Similarity=0.692  Sum_probs=43.7

Q ss_pred             CCceeeccc--ccccccchhhHHHHHHH-h-------------------CCcceecC-CCCCcCCcchHHHHHH
Q 026210          137 GEKKYKCER--CSKKYAVQSDWKAHMKT-C-------------------GTREYKCD-CGTIFSRRDSFITHRA  187 (241)
Q Consensus       137 ~ek~~~C~~--C~k~f~~~~~L~~H~~~-~-------------------~~k~~~C~-C~k~f~~~~~L~~H~~  187 (241)
                      ++|||+|.+  |.|.|.....|+.|+.. |                   ..|||+|+ |+|+|.....|+-|+.
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            468999976  99999999999999876 5                   24899999 9999999999998865

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.93  E-value=8.5e-06  Score=39.84  Aligned_cols=21  Identities=43%  Similarity=0.964  Sum_probs=10.9

Q ss_pred             eecccccccccchhhHHHHHH
Q 026210          141 YKCERCSKKYAVQSDWKAHMK  161 (241)
Q Consensus       141 ~~C~~C~k~f~~~~~L~~H~~  161 (241)
                      |.|..|++.|.+...|..|++
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~   21 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMR   21 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHh
Confidence            345555555555555555554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.84  E-value=1.9e-05  Score=47.53  Aligned_cols=23  Identities=30%  Similarity=0.641  Sum_probs=13.8

Q ss_pred             CccccccccccCChhHHHHHhhhc
Q 026210           64 RFVCEICNKGFQRDQNLQLHRRGH   87 (241)
Q Consensus        64 ~~~C~~C~~~f~~~~~L~~H~~~h   87 (241)
                      .|.|++|++. .+...|..|....
T Consensus         2 ~f~CP~C~~~-~~~~~L~~H~~~~   24 (54)
T PF05605_consen    2 SFTCPYCGKG-FSESSLVEHCEDE   24 (54)
T ss_pred             CcCCCCCCCc-cCHHHHHHHHHhH
Confidence            4667777773 3455677775443

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.82  E-value=4.8e-06  Score=66.68  Aligned_cols=56  Identities=34%  Similarity=0.686  Sum_probs=48.3

Q ss_pred             cCccccCCCCCcccCCCCCcCCChhhHhhhhcccc-------------------CCceeecccccccccchhhHHHHHHH
Q 026210          102 RKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKH-------------------GEKKYKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       102 ~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~-------------------~ek~~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      .+++|+|++-+|     .+.|.....|+-|++.-+                   ..|||+|++|+|+|.....|+.|+..
T Consensus       346 d~KpykCpV~gC-----~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~H  420 (423)
T COG5189         346 DGKPYKCPVEGC-----NKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRKH  420 (423)
T ss_pred             cCceecCCCCCc-----hhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecccc
Confidence            459999999988     999999999999986422                   24899999999999999999998764

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.75  E-value=1.6e-05  Score=39.09  Aligned_cols=22  Identities=23%  Similarity=0.661  Sum_probs=9.9

Q ss_pred             eecC-CCCCcCCcchHHHHHHhc
Q 026210          168 YKCD-CGTIFSRRDSFITHRAFC  189 (241)
Q Consensus       168 ~~C~-C~k~f~~~~~L~~H~~~~  189 (241)
                      |.|+ |++.|.+...|..|++.|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            3454 555555555555555444

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.69  E-value=1.5e-05  Score=40.66  Aligned_cols=24  Identities=29%  Similarity=0.671  Sum_probs=14.9

Q ss_pred             ceecC-CCCCcCCcchHHHHHHhcc
Q 026210          167 EYKCD-CGTIFSRRDSFITHRAFCD  190 (241)
Q Consensus       167 ~~~C~-C~k~f~~~~~L~~H~~~~~  190 (241)
                      +|.|. |++.|.+...|..|++.|+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            35666 6666666666666666554

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.66  E-value=2.9e-05  Score=39.53  Aligned_cols=25  Identities=36%  Similarity=0.711  Sum_probs=23.3

Q ss_pred             CccccccccccCChhHHHHHhhhcC
Q 026210           64 RFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        64 ~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      +|.|..|++.|.....|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            5899999999999999999998875

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.66  E-value=2.6e-05  Score=38.29  Aligned_cols=24  Identities=42%  Similarity=0.901  Sum_probs=20.1

Q ss_pred             ccccccccccCChhHHHHHhhhcC
Q 026210           65 FVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        65 ~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      |.|++|++.|.+...|..|++.|+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            689999999999999999998763

...

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.63  E-value=3.9e-05  Score=52.35  Aligned_cols=72  Identities=18%  Similarity=0.459  Sum_probs=18.1

Q ss_pred             cccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeeccc
Q 026210           66 VCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCER  145 (241)
Q Consensus        66 ~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~  145 (241)
                      +|..|+..|.....|..|+...+             +-. ..  .        ...+.....+..+.+... ...+.|..
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H-------------~~~-~~--~--------~~~l~~~~~~~~~~~~~~-~~~~~C~~   55 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKH-------------GFD-IP--D--------QKYLVDPNRLLNYLRKKV-KESFRCPY   55 (100)
T ss_dssp             -------------------------------------------------------------------------SSEEBSS
T ss_pred             Ccccccccccccccccccccccc-------------ccc-cc--c--------cccccccccccccccccc-CCCCCCCc
Confidence            48888888888888888886544             111 00  0        111112222333332221 22578888


Q ss_pred             ccccccchhhHHHHHHH
Q 026210          146 CSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       146 C~k~f~~~~~L~~H~~~  162 (241)
                      |++.|.....|..|++.
T Consensus        56 C~~~f~s~~~l~~Hm~~   72 (100)
T PF12756_consen   56 CNKTFRSREALQEHMRS   72 (100)
T ss_dssp             SS-EESSHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHcC
Confidence            88888888888888876

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.53  E-value=4.8e-05  Score=51.89  Aligned_cols=73  Identities=15%  Similarity=0.293  Sum_probs=21.7

Q ss_pred             cCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHHhCCcceecC-CCCCcCCcchHHHH
Q 026210          107 VCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCD-CGTIFSRRDSFITH  185 (241)
Q Consensus       107 ~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~~~~k~~~C~-C~k~f~~~~~L~~H  185 (241)
                      +|..|       +..|.....|..|+...++...-    ....+.....+..+.+..-...+.|. |++.|.....|..|
T Consensus         1 ~C~~C-------~~~f~~~~~l~~H~~~~H~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~H   69 (100)
T PF12756_consen    1 QCLFC-------DESFSSVDDLLQHMKKKHGFDIP----DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEH   69 (100)
T ss_dssp             -----------------------------------------------------------SSEEBSSSS-EESSHHHHHHH
T ss_pred             Ccccc-------ccccccccccccccccccccccc----cccccccccccccccccccCCCCCCCccCCCCcCHHHHHHH
Confidence            47888       88999999999999776653211    11222244444445444333479999 99999999999999


Q ss_pred             HHhcc
Q 026210          186 RAFCD  190 (241)
Q Consensus       186 ~~~~~  190 (241)
                      ++.++
T Consensus        70 m~~~~   74 (100)
T PF12756_consen   70 MRSKH   74 (100)
T ss_dssp             HHHTT
T ss_pred             HcCcc
Confidence            99763

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=0.00023  Score=63.49  Aligned_cols=40  Identities=20%  Similarity=0.370  Sum_probs=25.2

Q ss_pred             CCcCCChhhHhhhhccccCCceeecccc------cccccchhhHHHHHHH
Q 026210          119 ARALGDLTGIKKHFSRKHGEKKYKCERC------SKKYAVQSDWKAHMKT  162 (241)
Q Consensus       119 ~~~f~~~~~l~~H~~~h~~ek~~~C~~C------~k~f~~~~~L~~H~~~  162 (241)
                      ...|.....|.+|++.++    |.|..|      +..|.....|..|.+.
T Consensus       189 ~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~  234 (669)
T KOG2231|consen  189 HERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRK  234 (669)
T ss_pred             hhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhh
Confidence            666666667777766554    445555      3456666777777776

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.15  E-value=0.00048  Score=39.85  Aligned_cols=31  Identities=13%  Similarity=0.294  Sum_probs=21.2

Q ss_pred             CCceeecccccccccchhhHHHHHHH-hCCcc
Q 026210          137 GEKKYKCERCSKKYAVQSDWKAHMKT-CGTRE  167 (241)
Q Consensus       137 ~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~  167 (241)
                      .+.|-.|.+|+..+.+..+|++|+.. |+.||
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            46788999999999999999999987 87765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=97.10  E-value=0.00033  Score=34.78  Aligned_cols=24  Identities=33%  Similarity=0.670  Sum_probs=21.9

Q ss_pred             ccccccccccCChhHHHHHhhhcC
Q 026210           65 FVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        65 ~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      |.|..|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            689999999999999999998764

>smart00355 ZnF_C2H2 zinc finger

Probab=97.05  E-value=0.00037  Score=34.61  Aligned_cols=23  Identities=26%  Similarity=0.787  Sum_probs=16.6

Q ss_pred             eecC-CCCCcCCcchHHHHHHhcc
Q 026210          168 YKCD-CGTIFSRRDSFITHRAFCD  190 (241)
Q Consensus       168 ~~C~-C~k~f~~~~~L~~H~~~~~  190 (241)
                      |.|. |++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            5677 7777777777777777543

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=96.98  E-value=0.0013  Score=62.39  Aligned_cols=66  Identities=17%  Similarity=0.231  Sum_probs=40.2

Q ss_pred             CCCCccccccccccCChhHHHHHhhhcCCCchhhh------------cchhhhcCccccCCCCCcccCCCCCcCCChhhH
Q 026210           61 ATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQ------------RNSKEVRKKVYVCPESTCVHHNPARALGDLTGI  128 (241)
Q Consensus        61 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~------------~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l  128 (241)
                      -.+.|+|+.|+..|.....|..|||.-+.......            ........++|.|..|       ...+.....|
T Consensus       462 ~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C-------~~stttng~L  534 (1406)
T KOG1146|consen  462 FFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRAC-------NYSTTTNGNL  534 (1406)
T ss_pred             ccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceee-------eeeeecchHH
Confidence            34788999999999999999999987331110000            0011123456666666       6666666666


Q ss_pred             hhhhc
Q 026210          129 KKHFS  133 (241)
Q Consensus       129 ~~H~~  133 (241)
                      ..|+.
T Consensus       535 sihlq  539 (1406)
T KOG1146|consen  535 SIHLQ  539 (1406)
T ss_pred             HHHHH
Confidence            66654

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.84  E-value=0.00089  Score=38.78  Aligned_cols=29  Identities=21%  Similarity=0.400  Sum_probs=21.2

Q ss_pred             CCCCCccccccccccCChhHHHHHhhhcC
Q 026210           60 LATNRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        60 ~~~~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      ..+.|..|++|+..+.+..+|++|+..++
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle~~H   48 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLEIRH   48 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHHHHT
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHHHHh
Confidence            35678999999999999999999998776

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.80  E-value=0.00071  Score=33.55  Aligned_cols=23  Identities=43%  Similarity=0.980  Sum_probs=21.1

Q ss_pred             ccccccccccCChhHHHHHhhhc
Q 026210           65 FVCEICNKGFQRDQNLQLHRRGH   87 (241)
Q Consensus        65 ~~C~~C~~~f~~~~~L~~H~~~h   87 (241)
                      |.|..|++.|.+...|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            67999999999999999999764

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.67  E-value=0.00091  Score=32.83  Aligned_cols=22  Identities=27%  Similarity=0.502  Sum_probs=11.1

Q ss_pred             eecC-CCCCcCCcchHHHHHHhcc
Q 026210          168 YKCD-CGTIFSRRDSFITHRAFCD  190 (241)
Q Consensus       168 ~~C~-C~k~f~~~~~L~~H~~~~~  190 (241)
                      |.|. |+.... ...|.+|++.+|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            4555 555555 555556655554

>PRK04860 hypothetical protein; Provisional

Probab=96.50  E-value=0.0011  Score=49.18  Aligned_cols=38  Identities=26%  Similarity=0.687  Sum_probs=29.1

Q ss_pred             ceeecccccccccchhhHHHHHHH-hCCcceecC-CCCCcCCcc
Q 026210          139 KKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRD  180 (241)
Q Consensus       139 k~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~~~  180 (241)
                      -+|.|. |++   ....+.+|.++ .++++|.|. |+..|....
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence            368887 887   56677888888 577888888 888876543

>PRK04860 hypothetical protein; Provisional

Probab=96.48  E-value=0.0018  Score=48.05  Aligned_cols=40  Identities=23%  Similarity=0.558  Sum_probs=34.3

Q ss_pred             ccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchh
Q 026210          104 KVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQS  154 (241)
Q Consensus       104 ~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~  154 (241)
                      -+|.|. |       +.   ....+.+|.++|+++++|.|..|+..|....
T Consensus       118 ~~Y~C~-C-------~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        118 FPYRCK-C-------QE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEEcC-C-------CC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence            479997 8       65   5677899999999999999999999987654

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.39  E-value=0.0023  Score=31.61  Aligned_cols=22  Identities=18%  Similarity=0.812  Sum_probs=13.2

Q ss_pred             eecccccccccchhhHHHHHHH
Q 026210          141 YKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       141 ~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      |.|.+|++.|.....|..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            4566666666666666666553

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.37  E-value=0.0013  Score=33.27  Aligned_cols=22  Identities=32%  Similarity=0.827  Sum_probs=20.4

Q ss_pred             ccccccccccCChhHHHHHhhh
Q 026210           65 FVCEICNKGFQRDQNLQLHRRG   86 (241)
Q Consensus        65 ~~C~~C~~~f~~~~~L~~H~~~   86 (241)
                      |.|..|++.|.+...|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            7899999999999999999875

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.33  E-value=0.0035  Score=51.29  Aligned_cols=119  Identities=18%  Similarity=0.349  Sum_probs=69.1

Q ss_pred             Cccccc--cccccCChhHHHHHhhhcCCCchhhhc----------------------chhhh---c-CccccCCCCCccc
Q 026210           64 RFVCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQR----------------------NSKEV---R-KKVYVCPESTCVH  115 (241)
Q Consensus        64 ~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~~~----------------------~~~~~---~-~~~~~C~~C~c~~  115 (241)
                      .|.|+.  |.........|+.|.+..+...-|...                      .....   | +..=.|.+|    
T Consensus       151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC----  226 (493)
T COG5236         151 SFKCPKSKCHRRCGSLKELKKHYKAQHGFVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFC----  226 (493)
T ss_pred             HhcCCchhhhhhhhhHHHHHHHHHhhcCcEEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhc----
Confidence            377875  777666678899998775422221110                      00000   0 112256666    


Q ss_pred             CCCCCcCCChhhHhhhhccccCCceeeccccc-------ccccchhhHHHHHHHhCCcceecC---CC----CCcCCcch
Q 026210          116 HNPARALGDLTGIKKHFSRKHGEKKYKCERCS-------KKYAVQSDWKAHMKTCGTREYKCD---CG----TIFSRRDS  181 (241)
Q Consensus       116 ~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~-------k~f~~~~~L~~H~~~~~~k~~~C~---C~----k~f~~~~~  181 (241)
                         ...|-....|..|++..+ |   .|.+|+       +.|..-.+|..|.+.   -.|.|.   |.    ..|.+...
T Consensus       227 ---~~~FYdDDEL~~HcR~~H-E---~ChICD~v~p~~~QYFK~Y~~Le~HF~~---~hy~ct~qtc~~~k~~vf~~~~e  296 (493)
T COG5236         227 ---KIYFYDDDELRRHCRLRH-E---ACHICDMVGPIRYQYFKSYEDLEAHFRN---AHYCCTFQTCRVGKCYVFPYHTE  296 (493)
T ss_pred             ---cceecChHHHHHHHHhhh-h---hhhhhhccCccchhhhhCHHHHHHHhhc---CceEEEEEEEecCcEEEeccHHH
Confidence               666666677777766544 2   344443       246666677777665   125662   54    45888889


Q ss_pred             HHHHHHhccCchhhh
Q 026210          182 FITHRAFCDALAEES  196 (241)
Q Consensus       182 L~~H~~~~~~~~~~~  196 (241)
                      |..|+..-|+.....
T Consensus       297 l~~h~~~~h~~~~~~  311 (493)
T COG5236         297 LLEHLTRFHKVNARL  311 (493)
T ss_pred             HHHHHHHHhhccccc
Confidence            999988877765443

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.29  E-value=0.0014  Score=49.51  Aligned_cols=83  Identities=20%  Similarity=0.500  Sum_probs=67.8

Q ss_pred             cCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHH-h----------CCcceec
Q 026210          102 RKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-C----------GTREYKC  170 (241)
Q Consensus       102 ~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~----------~~k~~~C  170 (241)
                      ....|.|++-+|     .+.|.....+..|..+-++   -.|.+|.+.|.+...|..|+.. |          |.-.|.|
T Consensus        76 ~~~~~~cqvagc-----~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~C  147 (253)
T KOG4173|consen   76 RVPAFACQVAGC-----CQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQC  147 (253)
T ss_pred             ccccccccccch-----HHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHH
Confidence            345688999888     7888888877788765555   4899999999999999999875 5          5567999


Q ss_pred             --C-CCCCcCCcchHHHHHHhccCc
Q 026210          171 --D-CGTIFSRRDSFITHRAFCDAL  192 (241)
Q Consensus       171 --~-C~k~f~~~~~L~~H~~~~~~~  192 (241)
                        + |+..|.+...-+.|+-..|+.
T Consensus       148 lvEgCt~KFkT~r~RkdH~I~~Hk~  172 (253)
T KOG4173|consen  148 LVEGCTEKFKTSRDRKDHMIRMHKY  172 (253)
T ss_pred             HHHhhhhhhhhhhhhhhHHHHhccC
Confidence              4 999999999999998877653

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=95.91  E-value=0.0087  Score=29.21  Aligned_cols=21  Identities=43%  Similarity=0.842  Sum_probs=14.5

Q ss_pred             eecccccccccchhhHHHHHHH
Q 026210          141 YKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       141 ~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      |+|..|+.... ...|..|++.
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~   21 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKR   21 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHh
Confidence            67788887776 7778888776

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.58  E-value=0.0027  Score=32.09  Aligned_cols=21  Identities=33%  Similarity=0.860  Sum_probs=10.3

Q ss_pred             eecccccccccchhhHHHHHH
Q 026210          141 YKCERCSKKYAVQSDWKAHMK  161 (241)
Q Consensus       141 ~~C~~C~k~f~~~~~L~~H~~  161 (241)
                      |.|..|++.|.+...|..|++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            345555555555555544443

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.02  E-value=0.086  Score=47.67  Aligned_cols=103  Identities=22%  Similarity=0.420  Sum_probs=57.6

Q ss_pred             cccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecc-
Q 026210           66 VCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCE-  144 (241)
Q Consensus        66 ~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~-  144 (241)
                      .|..|...|.+...|..|++.+                 .|.|..|.- -.....-|.....|..|.+.+|    |.|. 
T Consensus       184 ~C~~C~~~fld~~el~rH~~~~-----------------h~~chfC~~-~~~~neyy~~~~dLe~HfR~~H----flCE~  241 (669)
T KOG2231|consen  184 LCKFCHERFLDDDELYRHLRFD-----------------HEFCHFCDY-KTGQNEYYNDYDDLEEHFRKGH----FLCEE  241 (669)
T ss_pred             cchhhhhhhccHHHHHHhhccc-----------------eeheeecCc-ccccchhcccchHHHHHhhhcC----ccccc
Confidence            3555555555555555555544                 356666620 0001667888889999988766    7786 


Q ss_pred             -ccc-ccccchhhHHHHHH-----HhCCcceecC------C-CCCcCCcchHHHHHHhcc
Q 026210          145 -RCS-KKYAVQSDWKAHMK-----TCGTREYKCD------C-GTIFSRRDSFITHRAFCD  190 (241)
Q Consensus       145 -~C~-k~f~~~~~L~~H~~-----~~~~k~~~C~------C-~k~f~~~~~L~~H~~~~~  190 (241)
                       .|- +.|.....+..|++     ...++-|.|.      + ...|.....+..|.++-+
T Consensus       242 ~~C~~~~f~~~~~~ei~lk~~~~~~~~e~~~~~~~~r~Gr~s~~~r~~~~~~~~~~~~~~  301 (669)
T KOG2231|consen  242 EFCRTKKFYVAFELEIELKAHNRFIQHEKCYICRPSRPGRPSSRYRGPYRRLESHFRVSD  301 (669)
T ss_pred             cccccceeeehhHHHHHHHhhccccchheeccCCcccCCCCcccccCCcccccccccccc
Confidence             563 44554445555555     3345666662      1 133444445556655544

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=94.62  E-value=0.021  Score=49.17  Aligned_cols=61  Identities=23%  Similarity=0.374  Sum_probs=49.4

Q ss_pred             CCccccccccccCChhHHHHHhh--hcCCCchhhhcchhhhcC--ccccCC--CCCcccCCCCCcCCChhhHhhhhcccc
Q 026210           63 NRFVCEICNKGFQRDQNLQLHRR--GHNLPWKLKQRNSKEVRK--KVYVCP--ESTCVHHNPARALGDLTGIKKHFSRKH  136 (241)
Q Consensus        63 ~~~~C~~C~~~f~~~~~L~~H~~--~h~~~~~~~~~~~~~~~~--~~~~C~--~C~c~~~~~~~~f~~~~~l~~H~~~h~  136 (241)
                      .++.|..|...|.....|..|.+  .|.             .+  +++.|.  .|       ++.|.....+..|...|+
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~-------------~~~~~~~~~p~~~~-------~~~~~~~~~~~~~~~~~~  347 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHS-------------GESLKPFSCPYSLC-------GKLFSRNDALKRHILLHT  347 (467)
T ss_pred             cCCCCccccCCccccccccccccccccc-------------cccCCceeeeccCC-------CccccccccccCCccccc
Confidence            46888899999999999999988  677             66  788888  67       888888888888888888


Q ss_pred             CCceeec
Q 026210          137 GEKKYKC  143 (241)
Q Consensus       137 ~ek~~~C  143 (241)
                      +.+++.|
T Consensus       348 ~~~~~~~  354 (467)
T COG5048         348 SISPAKE  354 (467)
T ss_pred             CCCcccc
Confidence            6655444

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.60  E-value=0.12  Score=42.62  Aligned_cols=66  Identities=15%  Similarity=0.236  Sum_probs=48.6

Q ss_pred             ChhhHhhhhccccCCc----eeecccccccccchhhHHHHHHHhCCcceecC-CC----CCcCCcchHHHHHHhc
Q 026210          124 DLTGIKKHFSRKHGEK----KYKCERCSKKYAVQSDWKAHMKTCGTREYKCD-CG----TIFSRRDSFITHRAFC  189 (241)
Q Consensus       124 ~~~~l~~H~~~h~~ek----~~~C~~C~k~f~~~~~L~~H~~~~~~k~~~C~-C~----k~f~~~~~L~~H~~~~  189 (241)
                      ....|..|...-..+.    .-.|..|.+.|..-+.|.+|+|...|+-|.|+ =+    .-|.....|-+|.+.-
T Consensus       200 ~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~~FYdDDEL~~HcR~~HE~ChICD~v~p~~~QYFK~Y~~Le~HF~~~  274 (493)
T COG5236         200 RSSTLRDHKNGGLEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRHEACHICDMVGPIRYQYFKSYEDLEAHFRNA  274 (493)
T ss_pred             ecccccccccCCccccCcCCCchhhhccceecChHHHHHHHHhhhhhhhhhhccCccchhhhhCHHHHHHHhhcC
Confidence            4556777765433332    23699999999999999999999446767775 33    3488889999998764

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=94.40  E-value=0.026  Score=48.62  Aligned_cols=53  Identities=21%  Similarity=0.291  Sum_probs=45.6

Q ss_pred             ccCCCCCCCCCCCccccccCcc--ccCCC--CCcccc--ccccccCChhHHHHHhhhcC
Q 026210           36 KKKRNLPGMPDPDSEVIALSPK--TLLAT--NRFVCE--ICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~C~--~C~~~f~~~~~L~~H~~~h~   88 (241)
                      ...+..+.........+..+..  .|..+  +++.|.  .|++.|.....+..|...|.
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  347 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHT  347 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCccccc
Confidence            4556667777777788888888  79999  999999  79999999999999999887

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=94.38  E-value=0.058  Score=44.28  Aligned_cols=50  Identities=20%  Similarity=0.354  Sum_probs=40.7

Q ss_pred             eecccccccccchhhHHHHHHH-hC---------------------------CcceecC-CCCCcCCcchHHHHHHhcc
Q 026210          141 YKCERCSKKYAVQSDWKAHMKT-CG---------------------------TREYKCD-CGTIFSRRDSFITHRAFCD  190 (241)
Q Consensus       141 ~~C~~C~k~f~~~~~L~~H~~~-~~---------------------------~k~~~C~-C~k~f~~~~~L~~H~~~~~  190 (241)
                      .+|-.|.....+...|..||+. |.                           .+.-.|. |.-.|-....|..||.-+.
T Consensus       280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e~k  358 (423)
T KOG2482|consen  280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVEDK  358 (423)
T ss_pred             eEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhccccc
Confidence            5899999999889999999987 62                           1123477 9999999999999997654

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.20  E-value=0.037  Score=27.37  Aligned_cols=21  Identities=29%  Similarity=0.680  Sum_probs=17.1

Q ss_pred             ccccccccccCChhHHHHHhhh
Q 026210           65 FVCEICNKGFQRDQNLQLHRRG   86 (241)
Q Consensus        65 ~~C~~C~~~f~~~~~L~~H~~~   86 (241)
                      ..|+.||+.| ....|..|+.+
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            5799999999 55779999753

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.16  E-value=0.044  Score=27.11  Aligned_cols=19  Identities=26%  Similarity=0.632  Sum_probs=9.5

Q ss_pred             ecccccccccchhhHHHHHH
Q 026210          142 KCERCSKKYAVQSDWKAHMK  161 (241)
Q Consensus       142 ~C~~C~k~f~~~~~L~~H~~  161 (241)
                      .|..||+.| ..+.|.+|+.
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHH
Confidence            455555555 3444555543

>smart00451 ZnF_U1 U1-like zinc finger

Probab=94.07  E-value=0.039  Score=29.50  Aligned_cols=23  Identities=30%  Similarity=0.821  Sum_probs=20.8

Q ss_pred             CccccccccccCChhHHHHHhhh
Q 026210           64 RFVCEICNKGFQRDQNLQLHRRG   86 (241)
Q Consensus        64 ~~~C~~C~~~f~~~~~L~~H~~~   86 (241)
                      +|.|++|++.|.....+..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            58899999999999999999865

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=93.80  E-value=0.031  Score=53.61  Aligned_cols=78  Identities=17%  Similarity=0.233  Sum_probs=51.0

Q ss_pred             cCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-CCCCcCCc
Q 026210          102 RKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRR  179 (241)
Q Consensus       102 ~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~~  179 (241)
                      ..+.|.|+.|       ++.|.....|..||+..+-+-.-  .+|. .+...-.+.+-... .+.++|.|. |...|..+
T Consensus       462 ~~kt~~cpkc-------~~~yk~a~~L~vhmRskhp~~~~--~~c~-~gq~~~~~arg~~~~~~~~p~~C~~C~~stttn  531 (1406)
T KOG1146|consen  462 FFKTLKCPKC-------NWHYKLAQTLGVHMRSKHPESQS--AYCK-AGQNHPRLARGEVYRCPGKPYPCRACNYSTTTN  531 (1406)
T ss_pred             ccccccCCcc-------chhhhhHHHhhhcccccccccch--hHhH-hccccccccccccccCCCCcccceeeeeeeecc
Confidence            4578899999       88999999999998874432111  2221 11111111110111 356899999 99999999


Q ss_pred             chHHHHHHhc
Q 026210          180 DSFITHRAFC  189 (241)
Q Consensus       180 ~~L~~H~~~~  189 (241)
                      ..|.+|++..
T Consensus       532 g~LsihlqS~  541 (1406)
T KOG1146|consen  532 GNLSIHLQSD  541 (1406)
T ss_pred             hHHHHHHHHH
Confidence            9999999875

>smart00451 ZnF_U1 U1-like zinc finger

Probab=93.75  E-value=0.044  Score=29.32  Aligned_cols=22  Identities=23%  Similarity=0.436  Sum_probs=16.8

Q ss_pred             ceecC-CCCCcCCcchHHHHHHh
Q 026210          167 EYKCD-CGTIFSRRDSFITHRAF  188 (241)
Q Consensus       167 ~~~C~-C~k~f~~~~~L~~H~~~  188 (241)
                      +|.|+ |++.|.....+..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            47788 88888877788888765

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=93.72  E-value=0.016  Score=45.04  Aligned_cols=43  Identities=26%  Similarity=0.386  Sum_probs=35.3

Q ss_pred             cCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHH
Q 026210          107 VCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHM  160 (241)
Q Consensus       107 ~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~  160 (241)
                      -|.+|       .+.|.....|..|++.    |.|+|.+|.|.+.+--.|..|-
T Consensus        12 wcwyc-------nrefddekiliqhqka----khfkchichkkl~sgpglsihc   54 (341)
T KOG2893|consen   12 WCWYC-------NREFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIHC   54 (341)
T ss_pred             eeeec-------ccccchhhhhhhhhhh----ccceeeeehhhhccCCCceeeh
Confidence            38888       8999999999988875    4499999999888877777763

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=93.34  E-value=0.14  Score=42.81  Aligned_cols=48  Identities=25%  Similarity=0.342  Sum_probs=41.2

Q ss_pred             eecccccccccchhhHHHHHHH-hCC-----------------------cceecC-CC---CCcCCcchHHHHHHh
Q 026210          141 YKCERCSKKYAVQSDWKAHMKT-CGT-----------------------REYKCD-CG---TIFSRRDSFITHRAF  188 (241)
Q Consensus       141 ~~C~~C~k~f~~~~~L~~H~~~-~~~-----------------------k~~~C~-C~---k~f~~~~~L~~H~~~  188 (241)
                      -.|..|++.|..-.....||.. ||-                       .-|.|- |+   +.|......+.||..
T Consensus       167 t~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~  242 (390)
T KOG2785|consen  167 TDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD  242 (390)
T ss_pred             cceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence            4599999999999999999988 752                       337898 99   999999999999976

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=93.15  E-value=0.028  Score=43.73  Aligned_cols=45  Identities=20%  Similarity=0.514  Sum_probs=36.2

Q ss_pred             CceeecccccccccchhhHHHHHHHhCCcceecC-CCCCcCCcchHHHHH
Q 026210          138 EKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCD-CGTIFSRRDSFITHR  186 (241)
Q Consensus       138 ek~~~C~~C~k~f~~~~~L~~H~~~~~~k~~~C~-C~k~f~~~~~L~~H~  186 (241)
                      .|+| |.+|.+.|.....|..|++.   |.|+|. |-|..-+--.|..|-
T Consensus         9 ~kpw-cwycnrefddekiliqhqka---khfkchichkkl~sgpglsihc   54 (341)
T KOG2893|consen    9 DKPW-CWYCNREFDDEKILIQHQKA---KHFKCHICHKKLFSGPGLSIHC   54 (341)
T ss_pred             CCce-eeecccccchhhhhhhhhhh---ccceeeeehhhhccCCCceeeh
Confidence            4454 88999999999999999986   669999 998866666666663

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=93.13  E-value=0.16  Score=35.19  Aligned_cols=25  Identities=24%  Similarity=0.541  Sum_probs=22.6

Q ss_pred             ceec----C-CCCCcCCcchHHHHHHhccC
Q 026210          167 EYKC----D-CGTIFSRRDSFITHRAFCDA  191 (241)
Q Consensus       167 ~~~C----~-C~k~f~~~~~L~~H~~~~~~  191 (241)
                      -|.|    . |++.+.+...|++|++.+|+
T Consensus        80 G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   80 GYRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            3899    8 99999999999999999885

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>KOG4377 consensus Zn-finger protein [General function prediction only]

Probab=93.08  E-value=0.17  Score=42.69  Aligned_cols=120  Identities=14%  Similarity=0.277  Sum_probs=70.3

Q ss_pred             CCccc--cccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhccccCC--
Q 026210           63 NRFVC--EICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGE--  138 (241)
Q Consensus        63 ~~~~C--~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~e--  138 (241)
                      .-|.|  +.|+..+..+..+.+|.++|........ -....-...|.|..-+|     .+   .-+.+..|...|+..  
T Consensus       270 Ehyhcl~e~C~ykr~~k~DvirH~~~hkkrdnsL~-dgf~rfs~syhC~~~~C-----~k---sTsdV~~h~nFht~~~n  340 (480)
T KOG4377|consen  270 EHYHCLNEYCFYKRGQKNDVIRHVEIHKKRDNSLI-DGFHRFSNSYHCTGQIC-----EK---STSDVLLHDNFHTDKRN  340 (480)
T ss_pred             hhhcccCccccccccchhhhHHHHHHHhhcccccc-cchhhcCccchhhhccc-----Cc---ccccccccCcccccccc
Confidence            34667  3588888888889999988852111100 00111223466655444     55   334556676666532  


Q ss_pred             -----ceeecccccccccchhhHHHHHHHh---------CC--------------------cceecC---CCCCcCCcch
Q 026210          139 -----KKYKCERCSKKYAVQSDWKAHMKTC---------GT--------------------REYKCD---CGTIFSRRDS  181 (241)
Q Consensus       139 -----k~~~C~~C~k~f~~~~~L~~H~~~~---------~~--------------------k~~~C~---C~k~f~~~~~  181 (241)
                           ..|.|..||-++..+  ...|...|         |-                    .-|.|.   |+..|...+.
T Consensus       341 ~GfrrthfhC~r~gCTdtfK--~~khk~yh~kdda~~~dGfkkf~k~e~cay~gCkys~~cnhfhc~r~Gc~~tl~s~sq  418 (480)
T KOG4377|consen  341 NGFRRTHFHCQRIGCTDTFK--DSKHKPYHYKDDAGEIDGFKKFFKDENCAYTGCKYSGICNHFHCDRLGCEATLYSVSQ  418 (480)
T ss_pred             CceecceeEEeccCCccccc--cccccccccCcchhhhhhhhhhhccccCCccCcccccceeeeeecccCCceEEEehhh
Confidence                 357888877333333  22232212         11                    115564   9999999999


Q ss_pred             HHHHHHhccCch
Q 026210          182 FITHRAFCDALA  193 (241)
Q Consensus       182 L~~H~~~~~~~~  193 (241)
                      +..|.+.|.++.
T Consensus       419 m~shkrkheRqe  430 (480)
T KOG4377|consen  419 MASHKRKHERQE  430 (480)
T ss_pred             hhhhhhhhhhhh
Confidence            999999998873

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=92.55  E-value=0.042  Score=32.43  Aligned_cols=30  Identities=27%  Similarity=0.693  Sum_probs=21.9

Q ss_pred             ccCCceeecccccccccchhhHHHHHHH-hC
Q 026210          135 KHGEKKYKCERCSKKYAVQSDWKAHMKT-CG  164 (241)
Q Consensus       135 h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~  164 (241)
                      --||.-+.|+.||+.|....+..+|... |+
T Consensus        12 RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          12 RDGEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             cCCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            3466677788888888777777777776 65

>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]

Probab=92.46  E-value=0.1  Score=41.06  Aligned_cols=47  Identities=26%  Similarity=0.651  Sum_probs=25.6

Q ss_pred             eecccccccccchhhHHHHHHHhCCcceecC-CCCCcCCcchHHHHHHhc
Q 026210          141 YKCERCSKKYAVQSDWKAHMKTCGTREYKCD-CGTIFSRRDSFITHRAFC  189 (241)
Q Consensus       141 ~~C~~C~k~f~~~~~L~~H~~~~~~k~~~C~-C~k~f~~~~~L~~H~~~~  189 (241)
                      |.|.+||-...- ..+.+|+......-|.|- |++.|-+ .+++.|..-.
T Consensus         4 FtCnvCgEsvKK-p~vekH~srCrn~~fSCIDC~k~F~~-~sYknH~kCI   51 (276)
T KOG2186|consen    4 FTCNVCGESVKK-PQVEKHMSRCRNAYFSCIDCGKTFER-VSYKNHTKCI   51 (276)
T ss_pred             Eehhhhhhhccc-cchHHHHHhccCCeeEEeeccccccc-chhhhhhhhc
Confidence            556666655433 345556666222556666 6666655 4555565433

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=92.41  E-value=0.081  Score=31.27  Aligned_cols=29  Identities=31%  Similarity=0.710  Sum_probs=22.1

Q ss_pred             hCCcceecC-CCCCcCCcchHHHHHHhccC
Q 026210          163 CGTREYKCD-CGTIFSRRDSFITHRAFCDA  191 (241)
Q Consensus       163 ~~~k~~~C~-C~k~f~~~~~L~~H~~~~~~  191 (241)
                      -||--+.|. |+..|++..++.+|....|+
T Consensus        13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          13 DGEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             CCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            377778888 88888888888888776654

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=91.99  E-value=0.22  Score=40.99  Aligned_cols=53  Identities=17%  Similarity=0.431  Sum_probs=41.8

Q ss_pred             eeecccccccccchhhHHHHHHH--hCC----------------------------------------------------
Q 026210          140 KYKCERCSKKYAVQSDWKAHMKT--CGT----------------------------------------------------  165 (241)
Q Consensus       140 ~~~C~~C~k~f~~~~~L~~H~~~--~~~----------------------------------------------------  165 (241)
                      .+.|-.|.+.|..+..|+.||+.  |..                                                    
T Consensus       195 r~~CLyCekifrdkntLkeHMrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~  274 (423)
T KOG2482|consen  195 RLRCLYCEKIFRDKNTLKEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDD  274 (423)
T ss_pred             hheeeeeccccCCcHHHHHHHHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCC
Confidence            37899999999999999999986  420                                                    


Q ss_pred             -cc--eecC-CCCCcCCcchHHHHHHhccCc
Q 026210          166 -RE--YKCD-CGTIFSRRDSFITHRAFCDAL  192 (241)
Q Consensus       166 -k~--~~C~-C~k~f~~~~~L~~H~~~~~~~  192 (241)
                       .+  ..|- |....-+...|..||+..|..
T Consensus       275 a~a~~v~CLfC~~~~en~~~l~eHmk~vHe~  305 (423)
T KOG2482|consen  275 AEALSVVCLFCTNFYENPVFLFEHMKIVHEF  305 (423)
T ss_pred             CCccceEEEeeccchhhHHHHHHHHHHHHHh
Confidence             01  3688 998888888999999988764

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.44  E-value=0.1  Score=39.83  Aligned_cols=79  Identities=25%  Similarity=0.508  Sum_probs=61.8

Q ss_pred             CCCccccc--cccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhcccc---
Q 026210           62 TNRFVCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKH---  136 (241)
Q Consensus        62 ~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~---  136 (241)
                      ...|.|.+  |-+.|.....+..|..+.+             +.   .|.+|       .+.|.+...|..|+.-.+   
T Consensus        77 ~~~~~cqvagc~~~~d~lD~~E~hY~~~h-------------~~---sCs~C-------~r~~Pt~hLLd~HI~E~HDs~  133 (253)
T KOG4173|consen   77 VPAFACQVAGCCQVFDALDDYEHHYHTLH-------------GN---SCSFC-------KRAFPTGHLLDAHILEWHDSL  133 (253)
T ss_pred             cccccccccchHHHHhhhhhHHHhhhhcc-------------cc---hhHHH-------HHhCCchhhhhHHHHHHHHHH
Confidence            45678876  8888888887777765543             22   68888       999999999999976432   


Q ss_pred             -------CCceeec--ccccccccchhhHHHHHHH-h
Q 026210          137 -------GEKKYKC--ERCSKKYAVQSDWKAHMKT-C  163 (241)
Q Consensus       137 -------~ek~~~C--~~C~k~f~~~~~L~~H~~~-~  163 (241)
                             |.-.|.|  ..|+..|.+...-+.|+.. |
T Consensus       134 Fqa~veRG~dMy~ClvEgCt~KFkT~r~RkdH~I~~H  170 (253)
T KOG4173|consen  134 FQALVERGQDMYQCLVEGCTEKFKTSRDRKDHMIRMH  170 (253)
T ss_pred             HHHHHHcCccHHHHHHHhhhhhhhhhhhhhhHHHHhc
Confidence                   5567999  4599999999999999987 6

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=87.24  E-value=0.98  Score=31.23  Aligned_cols=24  Identities=21%  Similarity=0.588  Sum_probs=22.2

Q ss_pred             eec----ccccccccchhhHHHHHHH-hC
Q 026210          141 YKC----ERCSKKYAVQSDWKAHMKT-CG  164 (241)
Q Consensus       141 ~~C----~~C~k~f~~~~~L~~H~~~-~~  164 (241)
                      |.|    ..|+..+.+...+..|++. ||
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            789    9999999999999999998 64

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=85.01  E-value=0.55  Score=32.44  Aligned_cols=29  Identities=28%  Similarity=0.634  Sum_probs=16.6

Q ss_pred             eecccccccccchhhHHHHHHHhCCcceecC-CCCCcCCc
Q 026210          141 YKCERCSKKYAVQSDWKAHMKTCGTREYKCD-CGTIFSRR  179 (241)
Q Consensus       141 ~~C~~C~k~f~~~~~L~~H~~~~~~k~~~C~-C~k~f~~~  179 (241)
                      ..|..||++|.-.          +..|-.|. ||..|.-.
T Consensus        10 R~Cp~CG~kFYDL----------nk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDL----------NKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccC----------CCCCccCCCCCCccCcc
Confidence            4566666666553          22556666 66666544

The function of members of this family is unknown.

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=82.77  E-value=0.82  Score=29.93  Aligned_cols=35  Identities=29%  Similarity=0.574  Sum_probs=22.8

Q ss_pred             cCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccch
Q 026210          102 RKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQ  153 (241)
Q Consensus       102 ~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~  153 (241)
                      ....|.|+.|       ++.        .+.+.-+|  -|.|..||..|.--
T Consensus        32 ~~~~~~Cp~C-------~~~--------~VkR~a~G--IW~C~kCg~~fAGg   66 (89)
T COG1997          32 QRAKHVCPFC-------GRT--------TVKRIATG--IWKCRKCGAKFAGG   66 (89)
T ss_pred             HhcCCcCCCC-------CCc--------ceeeeccC--eEEcCCCCCeeccc
Confidence            3457889988       542        23444444  48899998888644

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=82.65  E-value=0.82  Score=32.80  Aligned_cols=19  Identities=26%  Similarity=0.490  Sum_probs=7.1

Q ss_pred             CCCCcCCcchHHHHHHhccCch
Q 026210          172 CGTIFSRRDSFITHRAFCDALA  193 (241)
Q Consensus       172 C~k~f~~~~~L~~H~~~~~~~~  193 (241)
                      ||+.|..   |++|++.||++.
T Consensus        78 cGk~~k~---LkrHL~~~~glt   96 (132)
T PF05443_consen   78 CGKKFKT---LKRHLRTHHGLT   96 (132)
T ss_dssp             T--EESB---HHHHHHHTT-S-
T ss_pred             CCcccch---HHHHHHHccCCC
Confidence            4444432   355555555443

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=81.54  E-value=0.83  Score=24.13  Aligned_cols=10  Identities=20%  Similarity=0.730  Sum_probs=6.9

Q ss_pred             ceeecccccc
Q 026210          139 KKYKCERCSK  148 (241)
Q Consensus       139 k~~~C~~C~k  148 (241)
                      .++.|.+||.
T Consensus        16 ~~~~CP~Cg~   25 (33)
T cd00350          16 APWVCPVCGA   25 (33)
T ss_pred             CCCcCcCCCC
Confidence            5677777764

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=81.24  E-value=1.7  Score=24.53  Aligned_cols=25  Identities=40%  Similarity=0.658  Sum_probs=12.2

Q ss_pred             CCceeecccccccccch----hhHHHHHH
Q 026210          137 GEKKYKCERCSKKYAVQ----SDWKAHMK  161 (241)
Q Consensus       137 ~ek~~~C~~C~k~f~~~----~~L~~H~~  161 (241)
                      +.....|..|++.+...    +.|.+|++
T Consensus        13 ~~~~a~C~~C~~~~~~~~~~ts~l~~HL~   41 (45)
T PF02892_consen   13 DKKKAKCKYCGKVIKYSSGGTSNLKRHLK   41 (45)
T ss_dssp             CSS-EEETTTTEE-----SSTHHHHHHHH
T ss_pred             CcCeEEeCCCCeEEeeCCCcHHHHHHhhh
Confidence            34556777777766653    55555553

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]

Probab=80.84  E-value=4.1  Score=35.05  Aligned_cols=13  Identities=0%  Similarity=-0.335  Sum_probs=9.7

Q ss_pred             chHHHHHHhccCc
Q 026210          180 DSFITHRAFCDAL  192 (241)
Q Consensus       180 ~~L~~H~~~~~~~  192 (241)
                      ..|+.-.+.||..
T Consensus       197 ~eL~~YVk~hhtT  209 (480)
T KOG2675|consen  197 LELQAYVKEHHTT  209 (480)
T ss_pred             HHHHHHHHHhccc
Confidence            3588888888764

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=80.68  E-value=0.85  Score=35.63  Aligned_cols=30  Identities=20%  Similarity=0.423  Sum_probs=22.5

Q ss_pred             CCceeecccccccccchhhHHHHHHH-hCCc
Q 026210          137 GEKKYKCERCSKKYAVQSDWKAHMKT-CGTR  166 (241)
Q Consensus       137 ~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k  166 (241)
                      .+..|.|..|+|.|.-......|+.. |.++
T Consensus        74 ~~~K~~C~lc~KlFkg~eFV~KHI~nKH~e~  104 (214)
T PF04959_consen   74 DEDKWRCPLCGKLFKGPEFVRKHIFNKHPEK  104 (214)
T ss_dssp             SSEEEEE-SSS-EESSHHHHHHHHHHH-HHH
T ss_pred             cCCEECCCCCCcccCChHHHHHHHhhcCHHH
Confidence            45679999999999999999999988 7553

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	241
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		5e-10
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		2e-06

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 22/141 (15%)
Query: 48  DSEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYV 107
           D + +    +T      + C  C K F +  NL+ H+R H               +K Y 
Sbjct: 61  DKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH-------------TGEKPYA 107
Query: 108 CPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTR 166
           CPE         ++   L  ++ H     GEK YKC  C K ++ + +   H +T  G +
Sbjct: 108 CPEC-------GKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEK 160
Query: 167 EYKC-DCGTIFSRRDSFITHR 186
            YKC +CG  FSRRD+   H+
Sbjct: 161 PYKCPECGKSFSRRDALNVHQ 181

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 104 KVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT- 162
           K Y CPE         ++    + ++KH     GEK YKC  C K ++  SD + H +T 
Sbjct: 3   KPYKCPEC-------GKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH 55
Query: 163 CGTREYKC-DCGTIFSRRDSFITHR 186
            G + YKC +CG  FSR D    H+
Sbjct: 56  TGEKPYKCPECGKSFSRSDHLSRHQ 80

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	241
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	1e-11
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	4e-08
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	4e-06
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	1e-04
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	3e-09
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-07
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-04
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	4e-09
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	8e-09
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-05
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	5e-09
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	6e-08
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	6e-05
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	8e-04
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	1e-08
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	1e-05
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	7e-05
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	1e-08
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	2e-05
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	2e-08
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	4e-05
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-08
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	9e-05
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-08
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-07
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	3e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	3e-07
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	6e-07
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	7e-07
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	1e-06
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	3e-05
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-06
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-06
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	3e-06
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-04
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	1e-06
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	5e-06
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	8e-05
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	2e-06
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	7e-06
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-04
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	3e-06
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	4e-06
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	8e-04
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	4e-06
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	5e-06
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	1e-05
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	5e-06
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	9e-06
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	1e-05
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	1e-05
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	2e-04
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	1e-05
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-05
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	1e-05
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	2e-05
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	4e-05
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	7e-05
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	2e-04
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	1e-04
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	2e-04
2epa_A	72	Krueppel-like factor 10; transforming growth facto	1e-04
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	2e-04
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	2e-04
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	2e-04
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	2e-04
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	3e-04
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	4e-04
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	5e-04
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	5e-04
1ej6_B	1275	Lambda1; icosahedral, non-equivalence, dsRNA virus	6e-04
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	7e-04
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	7e-04

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 59.1 bits (144), Expect = 1e-11
 Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 26/128 (20%)

Query: 65  FVCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARAL 122
           F+C    CNK + +  +LQ+H R H          + E   K Y C    C      R  
Sbjct: 7   FMCAYPGCNKRYFKLSHLQMHSRKH----------TGE---KPYQCDFKDC-----ERRF 48

Query: 123 GDLTGIKKHFSRKH-GEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC---DCGTIFS 177
                +K+H  R+H G K ++C+ C +K++     K H +T  G + + C    C   F+
Sbjct: 49  SRSDQLKRH-QRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFA 107

Query: 178 RRDSFITH 185
           R D  + H
Sbjct: 108 RSDELVRH 115

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 49.4 bits (119), Expect = 4e-08
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 11/88 (12%)

Query: 104 KVYVCPESTCVHHNPARALGDLTGIKKHFSRKH-GEKKYKCER--CSKKYAVQSDWKAHM 160
           + ++C    C      +    L+ ++ H SRKH GEK Y+C+   C ++++     K H 
Sbjct: 5   RPFMCAYPGC-----NKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQ 58

Query: 161 KT-CGTREYKCD-CGTIFSRRDSFITHR 186
           +   G + ++C  C   FSR D   TH 
Sbjct: 59  RRHTGVKPFQCKTCQRKFSRSDHLKTHT 86

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 43.7 bits (104), Expect = 4e-06
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 6/55 (10%)

Query: 137 GEKKYKCE--RCSKKYAVQSDWKAHMKT-CGTREYKCD---CGTIFSRRDSFITH 185
            ++ + C    C+K+Y   S  + H +   G + Y+CD   C   FSR D    H
Sbjct: 3   EKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRH 57

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 26/103 (25%)

Query: 65  FVCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARAL 122
           + C+   C + F R   L+ H+R H          +     K + C    C      R  
Sbjct: 37  YQCDFKDCERRFSRSDQLKRHQRRH----------TGV---KPFQCKT--C-----QRKF 76

Query: 123 GDLTGIKKHFSRKH-GEKKYKCER--CSKKYAVQSDWKAHMKT 162
                +K H +R H GEK + C    C KK+A   +   H   
Sbjct: 77  SRSDHLKTH-TRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM 118

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 52.9 bits (128), Expect = 3e-09
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 10/89 (11%)

Query: 101 VRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHM 160
           +  +   CP   C      +   D + ++KH    HG + + C  C K +   S  K H 
Sbjct: 1   MEPRTIACPHKGC-----TKMFRDNSAMRKH-LHTHGPRVHVCAECGKAFVESSKLKRHQ 54

Query: 161 KT-CGTREYKC---DCGTIFSRRDSFITH 185
               G + ++C    CG  FS   +  TH
Sbjct: 55  LVHTGEKPFQCTFEGCGKRFSLDFNLRTH 83

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 48.3 bits (116), Expect = 1e-07
 Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 29/126 (23%)

Query: 67  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLT 126
            + C K F+ +  ++ H   H                +V+VC E  C      +A  + +
Sbjct: 10  HKGCTKMFRDNSAMRKHLHTHG--------------PRVHVCAE--C-----GKAFVESS 48

Query: 127 GIKKHFSRKH-GEKKYKC--ERCSKKYAVQSDWKAHMKT-CGTREYKC---DCGTIFSRR 179
            +K+H    H GEK ++C  E C K++++  + + H++   G R Y C    C   F++ 
Sbjct: 49  KLKRHQ-LVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQS 107

Query: 180 DSFITH 185
            +  +H
Sbjct: 108 TNLKSH 113

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 22/101 (21%)

Query: 65  FVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGD 124
            VC  C K F     L+ H+  H          + E   K + C    C      +    
Sbjct: 35  HVCAECGKAFVESSKLKRHQLVH----------TGE---KPFQCTFEGC-----GKRFSL 76

Query: 125 LTGIKKHFSRKH-GEKKYKC--ERCSKKYAVQSDWKAHMKT 162
              ++ H  R H G++ Y C  + C+KK+A  ++ K+H+ T
Sbjct: 77  DFNLRTH-VRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 116

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 53.0 bits (128), Expect = 4e-09
 Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 23/103 (22%)

Query: 65  FVCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARAL 122
             C    C K + R +NL+ H R H          + E   K Y+C    C     ++A 
Sbjct: 68  HKCTFEGCRKSYSRLENLKTHLRSH----------TGE---KPYMCEHEGC-----SKAF 109

Query: 123 GDLTGIKKHFSRKH-GEKKYKCER--CSKKYAVQSDWKAHMKT 162
            + +   KH +R H  EK Y C+   C+K+Y   S  + H+KT
Sbjct: 110 SNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 52.2 bits (126), Expect = 8e-09
 Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 20/126 (15%)

Query: 67  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLT 126
            + C++ F   + L  H    ++             +K +VC           R      
Sbjct: 6   WDGCSQEFDSQEQLVHHINSEHI----------HGERKEFVCHW--GGCSRELRPFKAQY 53

Query: 127 GIKKHFSRKH-GEKKYKC--ERCSKKYAVQSDWKAHMKT-CGTREYKC---DCGTIFSRR 179
            +  H  R+H GEK +KC  E C K Y+   + K H+++  G + Y C    C   FS  
Sbjct: 54  MLVVHM-RRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNA 112

Query: 180 DSFITH 185
                H
Sbjct: 113 SDRAKH 118

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 10/58 (17%)

Query: 138 EKKYKCERCSKKYAVQSDWKAHMKTC----GTREYKCD-CGTI-----FSRRDSFITH 185
           E   + + CS+++  Q     H+ +       +E+ C   G       F  +   + H
Sbjct: 1   ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVH 58

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 53.4 bits (129), Expect = 5e-09
 Identities = 33/131 (25%), Positives = 43/131 (32%), Gaps = 28/131 (21%)

Query: 65  FVCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARAL 122
           F C+   C KGF    +L  H   H          + E   K + C    C         
Sbjct: 43  FPCKEEGCEKGFTSLHHLTRHSLTH----------TGE---KNFTCDSDGC-----DLRF 84

Query: 123 GDLTGIKKHFSRKHGEKK--YKC--ERCSKKYAVQSDWKAHMKT-CGTREYKC---DCGT 174
                +KKHF+R H  K   Y C  E C K +   +  K H  +      Y+C    C  
Sbjct: 85  TTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDK 144

Query: 175 IFSRRDSFITH 185
            FS       H
Sbjct: 145 RFSLPSRLKRH 155

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 50.3 bits (121), Expect = 6e-08
 Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 32/134 (23%)

Query: 64  RFVCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARA 121
           R++C    C   + ++  LQ H   H          + E   K + C E  C      + 
Sbjct: 12  RYICSFADCGAAYNKNWKLQAHLCKH----------TGE---KPFPCKEEGC-----EKG 53

Query: 122 LGDLTGIKKHFSRKH-GEKKYKCE--RCSKKYAVQSDWKAHMKTCGTRE----YKC---D 171
              L  + +H S  H GEK + C+   C  ++  +++ K H            Y C   +
Sbjct: 54  FTSLHHLTRH-SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR-FHNIKICVYVCHFEN 111

Query: 172 CGTIFSRRDSFITH 185
           CG  F + +    H
Sbjct: 112 CGKAFKKHNQLKVH 125

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 41.4 bits (98), Expect = 6e-05
 Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 7/59 (11%)

Query: 134 RKH-GEKKYKCER--CSKKYAVQSDWKAHMKT-CGTREYKCD---CGTIFSRRDSFITH 185
                 K+Y C    C   Y      +AH+    G + + C    C   F+       H
Sbjct: 5   ALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH 63

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 38.3 bits (90), Expect = 8e-04
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 7/60 (11%)

Query: 134 RKH-GEKKYKCE--RCSKKYAVQSDWKAHMKT-CGTREYKCD---CGTIFSRRDSFITHR 186
            KH GEK + C+   C K +        H  T  G + + CD   C   F+ + +   H 
Sbjct: 35  CKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHF 94

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 50.2 bits (121), Expect = 1e-08
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 104 KVYVCPESTCVHHNPARALGDLTGIKKHFSRKH-GEKKYKCERCSKKYAVQSDWKAHMKT 162
           + Y CP  +C      R       + +H  R H G+K ++C  C + ++       H++T
Sbjct: 3   RPYACPVESC-----DRRFSQSGSLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56

Query: 163 -CGTREYKCD-CGTIFSRRDSFITHR 186
             G + + CD CG  F+R D    H 
Sbjct: 57  HTGEKPFACDICGRKFARSDERKRHT 82

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 22/94 (23%)

Query: 70  CNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIK 129
           C++ F +  +L  H R H               +K + C    C      R       + 
Sbjct: 12  CDRRFSQSGSLTRHIRIHT-------------GQKPFQCRI--C-----MRNFSRSDHLT 51

Query: 130 KHFSRKH-GEKKYKCERCSKKYAVQSDWKAHMKT 162
            H  R H GEK + C+ C +K+A   + K H K 
Sbjct: 52  TH-IRTHTGEKPFACDICGRKFARSDERKRHTKI 84

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 39.4 bits (93), Expect = 7e-05
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 138 EKKYKC--ERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITH 185
           E+ Y C  E C ++++       H++   G + ++C  C   FSR D   TH
Sbjct: 2   ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 53

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 49.8 bits (120), Expect = 1e-08
 Identities = 23/124 (18%), Positives = 32/124 (25%), Gaps = 49/124 (39%)

Query: 65  FVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGD 124
           F C IC + F R  +L  H R H                                     
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTH------------------------------------- 26

Query: 125 LTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCD-CGTIFSRRDSFI 183
            TG          EK + C+ C +K+A   + K H           D    + S+     
Sbjct: 27  -TG----------EKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHLE 75

Query: 184 THRA 187
              A
Sbjct: 76  NEVA 79

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 41.3 bits (98), Expect = 2e-05
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 139 KKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITHR 186
           K ++C  C + ++       H++T  G + + CD CG  F+R D    HR
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 48.7 bits (117), Expect = 2e-08
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 134 RKH-GEKKYKCERCSKKYAVQSDWKAHMKTC---GTREYKC-DCGTIFSRRDSFITHR 186
               GE  Y+C+ CS+ Y   S++  H  T      + Y C  C   F+R+D+   H 
Sbjct: 3   FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 39.5 bits (93), Expect = 4e-05
 Identities = 13/98 (13%), Positives = 24/98 (24%), Gaps = 46/98 (46%)

Query: 65  FVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGD 124
           + C++C++ +    N   H                               H         
Sbjct: 11  YRCKVCSRVYTHISNFCRHYVTS---------------------------HK-------- 35

Query: 125 LTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT 162
                         K Y C  C K++  + +  AH+K 
Sbjct: 36  -----------RNVKVYPCPFCFKEFTRKDNMTAHVKI 62

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 48.7 bits (117), Expect = 2e-08
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 129 KKHFSRKH-GEKKYKCERCSKKYAVQSDWKAHMKT---CGTREYKCD-CGTIFSRRDSFI 183
                R H GEK Y+C  C  ++      K H+         ++ C  C T+ +R+    
Sbjct: 4   GSS-GRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62

Query: 184 TH 185
            H
Sbjct: 63  VH 64

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 39.0 bits (92), Expect = 9e-05
 Identities = 14/105 (13%), Positives = 25/105 (23%), Gaps = 50/105 (47%)

Query: 65  FVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGD 124
           + C IC+  F +   +++H                                         
Sbjct: 16  YECYICHARFTQSGTMKMHILQK------------------------------------- 38

Query: 125 LTGIKKHFSRKHGE--KKYKCERCSKKYAVQSDWKAHMKTCGTRE 167
                      H E   K+ C  C    A +SD   H++   +  
Sbjct: 39  -----------HTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS 72

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 48.6 bits (117), Expect = 2e-08
 Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 3/57 (5%)

Query: 134 RKH-GEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITHRA 187
                    KC  CS   + ++  + H +  C  R +KC+ C     +  +   H  
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 47.0 bits (112), Expect = 1e-07
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 5/55 (9%)

Query: 137 GEKKYKCERCSKKYAVQSDWKAHMKT----CGTREYKCD-CGTIFSRRDSFITHR 186
           G    +CE C      ++    H +          + C+ CG  F + DS   HR
Sbjct: 4   GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 43.2 bits (102), Expect = 3e-06
 Identities = 14/98 (14%), Positives = 23/98 (23%), Gaps = 45/98 (45%)

Query: 65  FVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGD 124
             CEIC    ++  +L  H+R H                                     
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKH------------------------------------- 30

Query: 125 LTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT 162
                   +      ++ CE C K++       AH   
Sbjct: 31  --------AETVAALRFPCEFCGKRFEKPDSVAAHRSK 60

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 22/101 (21%)

Query: 65  FVCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARAL 122
             C+   C K + +  +L+ H R H          + E   K Y C    C         
Sbjct: 16  HYCDYPGCTKVYTKSSHLKAHLRTH----------TGE---KPYKCTWEGC-----DWRF 57

Query: 123 GDLTGIKKHFSRKH-GEKKYKCERCSKKYAVQSDWKAHMKT 162
                + +H+ RKH G K ++C  C++ ++       HMK 
Sbjct: 58  ARSDELTRHY-RKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 45.7 bits (109), Expect = 6e-07
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 11/97 (11%)

Query: 95  QRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKH-GEKKYKC--ERCSKKYA 151
                  +++++ C    C      +     + +K H  R H GEK YKC  E C  ++A
Sbjct: 5   SSGPDLEKRRIHYCDYPGC-----TKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFA 58

Query: 152 VQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITHR 186
              +   H +   G + ++C  C   FSR D    H 
Sbjct: 59  RSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 44.8 bits (107), Expect = 7e-07
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 134 RKH-GEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC-DCGTIFSRRDSFITHR 186
                +K YKC+RC   +  + +  +H     G + Y+C  CG  F+R  +  TH 
Sbjct: 10  HMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT 65

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 28/136 (20%), Positives = 46/136 (33%), Gaps = 45/136 (33%)

Query: 65  FVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGD 124
             C  C+K F     L++H R H               +K + CP+  C           
Sbjct: 8   VECPTCHKKFLSKYYLKVHNRKHT-------------GEKPFECPK--C----------- 41

Query: 125 LTGIKKHFSRK-----H--------GEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC 170
                K + RK     H         E+ + C  C + +  + + + HM +  G   YKC
Sbjct: 42  ----GKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKC 97

Query: 171 -DCGTIFSRRDSFITH 185
             C   F ++    +H
Sbjct: 98  SSCSQQFMQKKDLQSH 113

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 41.3 bits (98), Expect = 3e-05
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 137 GEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC-DCGTIFSRRDSFITH 185
           G    +C  C KK+  +   K H +   G + ++C  CG  + R+++ + H
Sbjct: 4   GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 46.3 bits (111), Expect = 1e-06
 Identities = 42/133 (31%), Positives = 56/133 (42%), Gaps = 42/133 (31%)

Query: 65  FVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGD 124
           + C  C K F +  NL+ H+R H               +K Y CPE  C           
Sbjct: 78  YKCPECGKSFSQRANLRAHQRTHT-------------GEKPYACPE--C----------- 111

Query: 125 LTGIKKHFSRK---------H-GEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC-DC 172
             G  K FS+          H GEK YKC  C K ++ + +   H +T  G + YKC +C
Sbjct: 112 --G--KSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPEC 167

Query: 173 GTIFSRRDSFITH 185
           G  FSRRD+   H
Sbjct: 168 GKSFSRRDALNVH 180

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 46.3 bits (111), Expect = 2e-06
 Identities = 41/135 (30%), Positives = 56/135 (41%), Gaps = 44/135 (32%)

Query: 65  FVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGD 124
           + C  C K F   ++L  H+R H               +K Y CPE  C           
Sbjct: 50  YKCPECGKSFSDKKDLTRHQRTHT-------------GEKPYKCPE--C----------- 83

Query: 125 LTGIKKHFSRK-----H-----GEKKYKCERCSKKYAVQSDWKAHMKTCGTRE--YKC-D 171
                K FS++     H     GEK Y C  C K ++  +  +AH +T  T E  YKC +
Sbjct: 84  ----GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT-HTGEKPYKCPE 138

Query: 172 CGTIFSRRDSFITHR 186
           CG  FSR D+  TH+
Sbjct: 139 CGKSFSREDNLHTHQ 153

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 45.5 bits (109), Expect = 3e-06
 Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 24/124 (19%)

Query: 65  FVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGD 124
           + C  C K F R  +L  H+R H          + E   K Y CPE  C      ++  D
Sbjct: 22  YACPECGKSFSRSDHLAEHQRTH----------TGE---KPYKCPE--C-----GKSFSD 61

Query: 125 LTGIKKHFSRKH-GEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC-DCGTIFSRRDS 181
              + +H  R H GEK YKC  C K ++ +++ +AH +T  G + Y C +CG  FS+   
Sbjct: 62  KKDLTRH-QRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAH 120

Query: 182 FITH 185
              H
Sbjct: 121 LRAH 124

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 40.5 bits (96), Expect = 1e-04
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 12/69 (17%)

Query: 130 KHFSRK---------H-GEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC-DCGTIFS 177
           K FSR          H GEK YKC  C K ++ + D   H +T  G + YKC +CG  FS
Sbjct: 29  KSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFS 88

Query: 178 RRDSFITHR 186
           +R +   H+
Sbjct: 89  QRANLRAHQ 97

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 44.3 bits (106), Expect = 1e-06
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 137 GEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC-DCGTIFSRRDSFITHR 186
               +KCE C K ++ +   K HM+   G + YKC  C    +   S   H 
Sbjct: 5   SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL 56

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 42.8 bits (102), Expect = 5e-06
 Identities = 20/69 (28%), Positives = 24/69 (34%), Gaps = 12/69 (17%)

Query: 130 KHFSRK---------H-GEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC-DCGTIFS 177
           K FSRK         H G K YKC+ C    A  S    H++     R +KC  C     
Sbjct: 16  KCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASR 75

Query: 178 RRDSFITHR 186
                  H 
Sbjct: 76  NSSQLTVHL 84

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 39.7 bits (94), Expect = 8e-05
 Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 23/106 (21%)

Query: 67  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLT 126
           CE+C K F R   L+ H R H          +     K Y C    C       A  D +
Sbjct: 11  CEVCGKCFSRKDKLKTHMRCH----------TGV---KPYKCKT--C-----DYAAADSS 50

Query: 127 GIKKHFSRKH-GEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC 170
            + KH  R H  E+ +KC+ C       S    H+++  G      
Sbjct: 51  SLNKH-LRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 134 RKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD---CGTIFSRRDSFITHR 186
           ++          C K Y   S  KAH++T  G + Y CD   CG  F+R D    H 
Sbjct: 1   KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY 57

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 42.5 bits (101), Expect = 7e-06
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 20/97 (20%)

Query: 67  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLT 126
              C K + +  +L+ H R H          + E   K Y C    C             
Sbjct: 10  YAGCGKTYTKSSHLKAHLRTH----------TGE---KPYHCDWDGC-----GWKFARSD 51

Query: 127 GIKKHFSRKH-GEKKYKCERCSKKYAVQSDWKAHMKT 162
            + +H+ RKH G + ++C++C + ++       HMK 
Sbjct: 52  ELTRHY-RKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 134 RKH-GEKKYKC--ERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITHR 186
           R H GEK Y C  + C  K+A   +   H +   G R ++C  C   FSR D    H 
Sbjct: 28  RTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHM 85

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 29/131 (22%), Positives = 45/131 (34%), Gaps = 25/131 (19%)

Query: 65  FVCEICNKGFQRDQNLQLHRRGHNL--PWKLKQRNSKEVRKKVYVCPESTCVHHNPA-RA 121
              + C++ F     L  H    ++  P            +  +VC    C     + +A
Sbjct: 26  RPKKSCDRTFSTMHELVTHVTMEHVGGPE-----------QNNHVCYWEECPREGKSFKA 74

Query: 122 LGDLTGIKKHFSRKH-GEKKYKC--ERCSKKYAVQSDWKAHMKT-CGTREYKC---DCGT 174
              L     H  R H GEK + C    C K +A   + K H +T  G + +KC    C  
Sbjct: 75  KYKL---VNH-IRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDR 130

Query: 175 IFSRRDSFITH 185
            F+       H
Sbjct: 131 RFANSSDRKKH 141

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 23/109 (21%)

Query: 67  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLT 126
           C    K F+    L  H R H          + E   K + CP   C      +      
Sbjct: 65  CPREGKSFKAKYKLVNHIRVH----------TGE---KPFPCPFPGC-----GKIFARSE 106

Query: 127 GIKKHFSRKH-GEKKYKCER--CSKKYAVQSDWKAHMKT-CGTREYKCD 171
            +K H  R H GEK +KCE   C +++A  SD K HM      +     
Sbjct: 107 NLKIH-KRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 38.0 bits (89), Expect = 8e-04
 Identities = 5/60 (8%), Positives = 16/60 (26%), Gaps = 11/60 (18%)

Query: 137 GEKKYKCERCSKKYAVQSDWKAHMKTC-GTREYKCD----------CGTIFSRRDSFITH 185
            +     + C + ++   +   H+         + +           G  F  +   + H
Sbjct: 22  AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 42.8 bits (102), Expect = 4e-06
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 134 RKH-GEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC-DCGTIFSRRDSFITH 185
            +    ++YKC+ C K ++  SD   H +T  G + YKC +CG  F +R   I H
Sbjct: 11  WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 42.6 bits (101), Expect = 5e-06
 Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 20/96 (20%)

Query: 67  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLT 126
            E C K F++   L++H+  H          +++     Y CP   C      +     +
Sbjct: 6   FENCGKAFKKHNQLKVHQFSH----------TQQ---LPYECPHEGC-----DKRFSLPS 47

Query: 127 GIKKHFSRKH-GEKKYKCERCSKKYAVQSDWKAHMK 161
            +K+H  + H G    K + CS      + +  H+ 
Sbjct: 48  RLKRHE-KVHAGYPCKKDDSCSFVGKTWTLYLKHVA 82

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 129 KKHFSRKH-GEKKYKC--ERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFI 183
           K H    H  +  Y+C  E C K++++ S  K H K   G    K D C  +      ++
Sbjct: 20  KVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYL 78

Query: 184 THR 186
            H 
Sbjct: 79  KHV 81

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 42.4 bits (101), Expect = 5e-06
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 134 RKH-GEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC-DCGTIFSRRDSFITH 185
             H   + Y C+ C K++  +SD K H     G + +KC  CG  FS+  + ITH
Sbjct: 22  LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 42.1 bits (100), Expect = 9e-06
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 134 RKH-GEKKYKCERCSKKYAVQSDWKAHMKT-----CGTREYKC-DCGTIFSRRDSFITH 185
           R H GEK Y C  C K +  +     H K           + C  CG  F+RR++   H
Sbjct: 8   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 41.3 bits (98), Expect = 1e-05
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 127 GIKKHFSRKH-GEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC-DCGTIFSRRDSFI 183
           G     S  H GEK Y C  C K ++  S    H +   G + YKC +CG  FS+    I
Sbjct: 1   GSSGS-SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLI 59

Query: 184 THR 186
            H+
Sbjct: 60  NHQ 62

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 42.4 bits (99), Expect = 1e-05
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 1/73 (1%)

Query: 128 IKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKC-DCGTIFSRRDSFITHR 186
            K + S   G  K++C+ CS  Y    +   HM   G       +      +R S    R
Sbjct: 7   GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKR 66

Query: 187 AFCDALAEESART 199
           +  +   +E A+ 
Sbjct: 67  SLLEMEGKEDAQK 79

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 17/102 (16%)

Query: 61  ATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVC-PESTCVHHNPA 119
             ++F C+ C+  +     L +H              +   R   +     +      P 
Sbjct: 16  GASKFRCKDCSAAYDTLVELTVH-----------MNETGHYRDDNHETDNNNPKRWSKPR 64

Query: 120 RALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMK 161
           +       + +   ++  +K  KC  C   +    D   HM 
Sbjct: 65  KR-----SLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 42.0 bits (100), Expect = 1e-05
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 134 RKH-GEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC-DCGTIFSRRDSFITHR 186
                +K++ C+ C + +    +   H +T    R Y C  C   F R+D    HR
Sbjct: 10  LPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR 65

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 12/69 (17%)

Query: 130 KHFSRK---------H-GEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC-DCGTIFS 177
           +HF++          H  E+ Y C+ C K +  Q   + H       + +KC +CG  F 
Sbjct: 25  RHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFC 84

Query: 178 RRDSFITHR 186
           +  +   H+
Sbjct: 85  QSRTLAVHK 93

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 137 GEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC-DCGTIFSRRDSFITH 185
           G     CE C K +        H  +  G + Y C  CG  F R+D    H
Sbjct: 4   GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH 54

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 40.9 bits (97), Expect = 2e-05
 Identities = 25/126 (19%), Positives = 35/126 (27%), Gaps = 54/126 (42%)

Query: 65  FVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGD 124
             CEIC K F+   +L  H+  H+                                    
Sbjct: 8   VACEICGKIFRDVYHLNRHKLSHS------------------------------------ 31

Query: 125 LTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTRE----YKC-DCGTIFSRR 179
                       GEK Y C  C  ++  +     H+++         Y C  CG  FSR 
Sbjct: 32  ------------GEKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGKPYICQSCGKGFSRP 78

Query: 180 DSFITH 185
           D    H
Sbjct: 79  DHLNGH 84

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 40.5 bits (96), Expect = 4e-05
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 133 SRKH-GEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC-DCGTIFSRRDSFITH 185
           S    G+K Y C+ C K +  +S    HM    G R Y C  CG  F  +   + H
Sbjct: 2   SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH 56

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 40.1 bits (95), Expect = 7e-05
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 12/68 (17%)

Query: 130 KHFSRK---------H-GEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC-DCGTIFS 177
           K F+ K         H G + Y C  C KK+ ++     HMK   G + Y+C  C   F 
Sbjct: 17  KSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFM 76

Query: 178 RRDSFITH 185
            RDSF  H
Sbjct: 77  WRDSFHRH 84

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 23/126 (18%), Positives = 36/126 (28%), Gaps = 43/126 (34%)

Query: 67  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLT 126
           C+ C K F        H   H                + Y C    C         G   
Sbjct: 13  CQ-CGKSFTHKSQRDRHMSMHL-------------GLRPYGCGV--C---------G--- 44

Query: 127 GIKKHFSRKH----------GEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKC-DCGTI 175
              K F  KH          G K Y+C  C+K++  +  +  H+ +  T+ Y+       
Sbjct: 45  ---KKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTS-CTKSYEAAKAEQN 100

Query: 176 FSRRDS 181
            +    
Sbjct: 101 TTEASG 106

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 104 KVYVCPESTCVHHNPARALGDLTGIKKHFSRKH-GEKKYKCERCSKKYAVQSDWKAHMKT 162
           + Y CP  +C      R       + +H  R H G+K ++C  C + ++       H++T
Sbjct: 18  RPYACPVESC-----DRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 137 GEKKYKC--ERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITHR 186
             + Y C  E C ++++   +   H++   G + ++C  C   FSR D   TH 
Sbjct: 16  KMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 126 TGIKKHFSRKHGEKKYKC--ERCSKKYAVQSDWKAHMKT-CGTREYKCD---CGTIFSRR 179
           +G           + + C    C K Y   S  KAH +T  G + + C    C   F+R 
Sbjct: 3   SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS 62

Query: 180 DSFITHR 186
           D    HR
Sbjct: 63  DELSRHR 69

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 37.4 bits (86), Expect = 2e-04
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 140 KYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITHRA 187
           KY CE C  +    S  K H++T    R Y C  C   F  + +   H  
Sbjct: 1   KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 37.2 bits (87), Expect = 2e-04
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 137 GEKKYKCERCSKKYAVQSDWKAHMKTCGTRE--YKCD-CGTIFS 177
             K Y C+ C K ++       H+K   T E  +KC    +  S
Sbjct: 9   VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 139 KKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC-DCGTIFSRRDSFITH 185
           + + CE C++ +A Q   K H ++    + Y C  C   F+RRD  I H
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 3/67 (4%)

Query: 125 LTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCD-CGTIFSRRDSFI 183
            +G   H   +   +   C+ C  +       K H   CG R   C  CG     +D   
Sbjct: 2   SSGSSGHEETECPLRLAVCQHCDLEL-SILKLKEHEDYCGARTELCGNCGRNVLVKD-LK 59

Query: 184 THRAFCD 190
           TH   C 
Sbjct: 60  THPEVCG 66

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 7/57 (12%)

Query: 137 GEKKYKC--ERCSKKYAVQSDWKAHMKTCGTRE--YKCD---CGTIFSRRDSFITHR 186
           G     C    C + ++ +     H K     +  + C    CG  F+ +     H 
Sbjct: 4   GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 10/78 (12%)

Query: 104 KVYVCPESTCVHHNPARALGDLTGIKKHFSRKH-GEKKYKCE--RCSKKYAVQSDWKAHM 160
               C    C      R   +   +  H   +H  +K + C    C K +  +   K HM
Sbjct: 6   SGMPCDFPGC-----GRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60

Query: 161 KT-CGTREYKCD-CGTIF 176
           K    TR+Y C+  G   
Sbjct: 61  KLHSDTRDYICEFSGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 36.8 bits (86), Expect = 5e-04
 Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 23/88 (26%)

Query: 65  FVCEI--CNKGFQRDQNLQLHRR-GHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARA 121
             C+   C + F   Q L  H++  H            +   K + CPE  C      ++
Sbjct: 8   MPCDFPGCGRIFSNRQYLNHHKKYQH----------IHQ---KSFSCPEPAC-----GKS 49

Query: 122 LGDLTGIKKHFSRKH-GEKKYKCERCSK 148
                 +K+H  + H   + Y CE    
Sbjct: 50  FNFKKHLKEH-MKLHSDTRDYICEFSGP 76

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 35.8 bits (83), Expect = 5e-04
 Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 1/31 (3%)

Query: 133 SRKH-GEKKYKCERCSKKYAVQSDWKAHMKT 162
           +R   G K ++C  C + ++       H K 
Sbjct: 3   TRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33

>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_V Length = 1275

 Score = 39.8 bits (92), Expect = 6e-04
 Identities = 9/81 (11%), Positives = 23/81 (28%), Gaps = 1/81 (1%)

Query: 7   SSAMTVASATGEASVSSPGSQIQVIPPTQKKKRNLPGMPDPDSEVIALSPKTLLATNRFV 66
            + +  A+    +            P + +       +       + L P    + + + 
Sbjct: 124 DTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTAS-SGHGYQ 182

Query: 67  CEICNKGFQRDQNLQLHRRGH 87
           C +C+       +L  H   H
Sbjct: 183 CHVCSAVLFSPLDLDAHVASH 203

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 35.6 bits (83), Expect = 7e-04
 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 133 SRKH-GEKKYKCERCSKKYAVQSDWKAHMKT 162
           S    GEK Y CE C  ++      K+H++ 
Sbjct: 3   SGSSGGEKPYPCEICGTRFRHLQTLKSHLRI 33

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 37.2 bits (85), Expect = 7e-04
 Identities = 16/99 (16%), Positives = 25/99 (25%), Gaps = 23/99 (23%)

Query: 64  RFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALG 123
            + C +CN           H R                 +   VCP  +    +P     
Sbjct: 16  VYQCRLCNAKLSSLLEQGSHERLC---------------RNAAVCPYCSLRFFSPE---- 56

Query: 124 DLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT 162
               +K+    K   KK  C  C + +        H   
Sbjct: 57  ----LKQEHESKCEYKKLTCLECMRTFKSSFSIWRHQVE 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	241
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.94
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.93
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.93
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.92
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.92
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.91
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.9
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.9
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.89
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.87
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.86
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.86
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.83
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.83
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.82
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.82
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.81
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.81
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.81
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.81
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.8
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.79
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.79
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.79
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.79
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.79
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.79
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.78
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.78
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.77
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.77
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.75
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.74
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.73
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.73
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.73
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.73
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.72
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.7
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.7
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.69
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.68
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.66
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.65
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.64
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.64
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.63
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.63
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.63
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.62
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.62
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.62
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.6
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.59
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.58
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.58
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.57
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.57
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.57
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.56
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.55
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.55
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.52
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.51
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.49
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.47
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.45
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.45
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.45
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.44
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.43
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.43
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.41
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.39
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.39
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.36
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.36
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.34
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.34
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.33
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.33
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.32
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.31
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.31
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.31
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.29
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.29
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.29
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.28
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.28
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.28
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.28
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.28
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.28
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.28
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.28
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.28
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.28
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.27
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.27
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.27
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.27
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.26
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.25
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.24
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.24
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.23
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.23
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.21
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.21
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.21
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.2
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.2
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.19
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.19
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.19
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.19
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.19
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.19
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.19
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.18
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.18
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.18
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.18
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.18
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.18
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.17
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.17
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.17
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.17
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.17
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.17
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.17
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.17
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.17
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.17
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.16
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.16
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.16
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.16
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.16
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.16
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.16
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.16
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.16
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.16
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.16
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.16
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.16
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.15
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.15
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.15
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.15
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.15
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.14
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.14
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.14
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.14
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.14
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.14
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.14
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.14
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.14
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.13
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.13
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.13
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.13
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.13
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.13
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.13
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.12
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.12
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.12
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.12
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.12
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.12
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.12
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.11
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.11
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.11
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.11
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.11
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.11
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.1
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.1
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.09
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.08
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.07
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.05
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.05
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.05
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.04
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.04
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.03
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.03
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.03
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.03
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.03
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.03
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.02
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.02
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.02
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.02
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.02
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.01
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.01
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.0
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.0
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.0
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.0
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.0
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.99
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.99
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.99
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.99
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.98
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.98
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.98
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.98
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.97
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.97
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.97
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.97
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.97
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.96
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.94
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.94
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.94
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.94
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.93
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.93
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.93
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.93
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.92
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.91
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.91
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.9
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.9
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.89
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.87
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.8
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.79
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.76
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.76
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.76
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.69
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.69
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.66
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.62
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.61
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.59
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.58
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.57
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.56
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.55
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.54
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.54
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.53
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.52
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.5
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.5
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.5
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.46
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.45
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.44
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.44
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.43
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.43
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.43
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.42
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.42
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.41
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.4
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.37
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.37
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.36
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.35
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.34
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.34
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.33
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.32
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.31
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.3
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.3
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.3
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.26
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.25
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.22
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.2
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.49
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.16
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.16
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.16
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.15
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.15
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.44
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.12
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.1
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.1
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.09
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.09
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.08
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.08
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.07
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.07
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.34
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.06
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.06
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.05
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.31
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.31
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.02
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.01
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.26
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.98
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.85
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.85
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.77
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.74
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.71
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.69
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.15
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.1
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.9
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.55
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.38
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.37
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.83
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	93.45
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	93.43
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	91.36
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	90.93
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	90.93
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	90.58
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	89.25
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	88.52
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	87.38
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	86.2
2czr_A	226	TBP-interacting protein; tata-binding protein (TBP	84.75
2czr_A	226	TBP-interacting protein; tata-binding protein (TBP	83.38
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	83.18
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	82.93
2i5o_A	39	DNA polymerase ETA; zinc finger, DNA polymerase,PO	80.05

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.94  E-value=1.6e-27  Score=182.81  Aligned_cols=152  Identities=28%  Similarity=0.549  Sum_probs=113.1

Q ss_pred             ccccCCCCCCCCCCCccccccCccccCCCCCccccccccccCChhHHHHHhhhcCCC--chhh-------------hcch
Q 026210           34 TQKKKRNLPGMPDPDSEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLP--WKLK-------------QRNS   98 (241)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~--~~~~-------------~~~~   98 (241)
                      .....+..++..+.....+..|...+.++++|.|..|++.|.....|..|++.|.+.  +.|.             ....
T Consensus        19 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   98 (190)
T 2i13_A           19 EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQR   98 (190)
T ss_dssp             ------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHH
T ss_pred             CCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHHHH
Confidence            344678888889999999999999999999999999999999999999999988643  2221             1122


Q ss_pred             hhhcCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-CCCCc
Q 026210           99 KEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIF  176 (241)
Q Consensus        99 ~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f  176 (241)
                      .+.++++|.|..|       ++.|.....|..|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|. |++.|
T Consensus        99 ~h~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f  171 (190)
T 2i13_A           99 THTGEKPYACPEC-------GKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSF  171 (190)
T ss_dssp             HHHTCCCEECTTT-------CCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred             hcCCCCCCcCCCC-------CCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCCcc
Confidence            3346778888888       88898888999999999888999999999999999999999988 688899998 99999


Q ss_pred             CCcchHHHHHHhccCc
Q 026210          177 SRRDSFITHRAFCDAL  192 (241)
Q Consensus       177 ~~~~~L~~H~~~~~~~  192 (241)
                      .+...|..|+++|++.
T Consensus       172 ~~~~~L~~H~~~H~~~  187 (190)
T 2i13_A          172 SRRDALNVHQRTHTGK  187 (190)
T ss_dssp             SSHHHHHHHHTTC---
T ss_pred             CCHHHHHHHHHhcCCC
Confidence            9999999999888754

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.93  E-value=1.1e-26  Score=178.13  Aligned_cols=135  Identities=28%  Similarity=0.592  Sum_probs=89.2

Q ss_pred             cccccCccccCCCCCccccccccccCChhHHHHHhhhcCCC--chhh-------------hcchhhhcCccccCCCCCcc
Q 026210           50 EVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLP--WKLK-------------QRNSKEVRKKVYVCPESTCV  114 (241)
Q Consensus        50 ~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~--~~~~-------------~~~~~~~~~~~~~C~~C~c~  114 (241)
                      ..+..+...+.++++|.|..|++.|.....|..|++.|.+.  +.|.             .....+.++++|.|..|   
T Consensus         7 ~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C---   83 (190)
T 2i13_A            7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC---   83 (190)
T ss_dssp             ------------------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTT---
T ss_pred             ccchhhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCccc---
Confidence            34566777888899999999999999999999999999743  2222             12223446778888888   


Q ss_pred             cCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-CCCCcCCcchHHHHHHhccC
Q 026210          115 HHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITHRAFCDA  191 (241)
Q Consensus       115 ~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~~~~L~~H~~~~~~  191 (241)
                          ++.|.....|..|++.|+++++|.|.+|++.|.....|..|+++ +++++|.|. |++.|.+...|..|+++|++
T Consensus        84 ----~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~  158 (190)
T 2i13_A           84 ----GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTG  158 (190)
T ss_dssp             ----CCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             ----CCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCC
Confidence                88888888888888888888889999999999988889999888 688889998 99999999999999888865

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.93  E-value=1.5e-25  Score=159.84  Aligned_cols=113  Identities=22%  Similarity=0.518  Sum_probs=105.6

Q ss_pred             CCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhcc---cc
Q 026210           60 LATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSR---KH  136 (241)
Q Consensus        60 ~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~---h~  136 (241)
                      .++++|.|.+|++.|.....|..|++.|.             ++++|.|.+|       ++.|.....|..|++.   |.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~~~~~~   62 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHT-------------GEKPFECPKC-------GKCYFRKENLLEHEARNCMNR   62 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHS-------------SCCSCBCTTT-------CCBCSSHHHHHHHHHHCCCCS
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCC-------------CCCCeECCCC-------CchhcCHHHHHHHHhhhhcCC
Confidence            46789999999999999999999999998             7899999999       9999999999999985   67


Q ss_pred             CCceeecccccccccchhhHHHHHHH-hCCcceecC-CCCCcCCcchHHHHHHhccCc
Q 026210          137 GEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITHRAFCDAL  192 (241)
Q Consensus       137 ~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~~~~L~~H~~~~~~~  192 (241)
                      ++++|.|.+|++.|.....|..|+++ +++++|.|. |++.|.+...|.+|++.+|..
T Consensus        63 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSC
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCCC
Confidence            89999999999999999999999999 689999999 999999999999999976643

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.92  E-value=9.6e-26  Score=159.77  Aligned_cols=110  Identities=29%  Similarity=0.693  Sum_probs=104.6

Q ss_pred             CCCCCccccc--cccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCC--CCCcccCCCCCcCCChhhHhhhhccc
Q 026210           60 LATNRFVCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCP--ESTCVHHNPARALGDLTGIKKHFSRK  135 (241)
Q Consensus        60 ~~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~--~C~c~~~~~~~~f~~~~~l~~H~~~h  135 (241)
                      .++++|.|.+  |++.|.....|..|++.|.             ++++|.|.  .|       ++.|.....|..|+++|
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h   61 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHT-------------GEKPYQCDFKDC-------ERRFSRSDQLKRHQRRH   61 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHH-------------TTCCEECCSTTC-------CCEESSHHHHHHHHHHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhC-------------CCCCccCCCCCC-------cCccCCHHHHHHHHHHc
Confidence            3578999997  9999999999999999998             78899999  68       99999999999999999


Q ss_pred             cCCceeecccccccccchhhHHHHHHH-hCCcceec--C-CCCCcCCcchHHHHHHhc
Q 026210          136 HGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC--D-CGTIFSRRDSFITHRAFC  189 (241)
Q Consensus       136 ~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C--~-C~k~f~~~~~L~~H~~~~  189 (241)
                      +++++|.|.+|++.|.....|..|+++ +++++|.|  . |++.|.+...|.+|+++|
T Consensus        62 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             CCCCCccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            999999999999999999999999999 69999999  8 999999999999999876

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.92  E-value=3.8e-26  Score=164.98  Aligned_cols=108  Identities=19%  Similarity=0.377  Sum_probs=99.5

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhc
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFS  133 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~  133 (241)
                      .+..++.++++|.|++|++.|.....|..|+++|.             ++++|.|.+|       ++.|.....|..|++
T Consensus        12 h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C-------~k~F~~~~~L~~H~~   71 (133)
T 2lt7_A           12 HYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHS-------------WEKKYPCRYC-------EKVFPLAEYRTKHEI   71 (133)
T ss_dssp             EEEEEETTEEEEEETTTCCEESCHHHHHHHHHHHH-------------CCSCEECSSS-------SCEESSHHHHHHHHH
T ss_pred             hceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcC-------------CCCCeeCCcc-------Ceecccccchhhhcc
Confidence            34567889999999999999999999999999998             8899999999       999999999999999


Q ss_pred             cccCCceeecccccccccchhhHHHHHHH-hCC------cceecC-CCCCcCCcch
Q 026210          134 RKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGT------REYKCD-CGTIFSRRDS  181 (241)
Q Consensus       134 ~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~------k~~~C~-C~k~f~~~~~  181 (241)
                      +|+++++|.|.+||+.|.....|..|+++ |++      ++|.|. |++.|.....
T Consensus        72 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~~~  127 (133)
T 2lt7_A           72 HHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQYA  127 (133)
T ss_dssp             HHHTCCCEEESSSCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCCCH
T ss_pred             ccCCCccccCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhccc
Confidence            99999999999999999999999999999 765      459999 9999987654

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.91  E-value=2.2e-24  Score=153.92  Aligned_cols=111  Identities=25%  Similarity=0.581  Sum_probs=101.7

Q ss_pred             CCCCcccc--ccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhccccCC
Q 026210           61 ATNRFVCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGE  138 (241)
Q Consensus        61 ~~~~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~e  138 (241)
                      ..++|.|.  .|++.|.+...|..|++.|              +.++|.|.+|       ++.|.....|..|+++|+++
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h--------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~   60 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH--------------GPRVHVCAEC-------GKAFVESSKLKRHQLVHTGE   60 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG--------------SCCCEECTTT-------CCEESSHHHHHHHGGGTSCC
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc--------------CCCCeECCCC-------CchhCCHHHHHHHHHHcCCC
Confidence            35789999  8999999999999999988              4689999999       99999999999999999999


Q ss_pred             ceeeccc--ccccccchhhHHHHHHH-hCCcceec--C-CCCCcCCcchHHHHHHhccCc
Q 026210          139 KKYKCER--CSKKYAVQSDWKAHMKT-CGTREYKC--D-CGTIFSRRDSFITHRAFCDAL  192 (241)
Q Consensus       139 k~~~C~~--C~k~f~~~~~L~~H~~~-~~~k~~~C--~-C~k~f~~~~~L~~H~~~~~~~  192 (241)
                      ++|.|.+  |++.|.....|..|+++ +++++|.|  + |++.|.+...|..|+++|++.
T Consensus        61 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~  120 (124)
T 1ubd_C           61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA  120 (124)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC--
T ss_pred             CCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHccc
Confidence            9999986  99999999999999999 79999999  6 999999999999999999864

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.90  E-value=1.7e-24  Score=160.37  Aligned_cols=134  Identities=24%  Similarity=0.397  Sum_probs=120.9

Q ss_pred             CCCCCCCCCCCccccccCcc---ccCCCCCcccccc-----ccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCC
Q 026210           38 KRNLPGMPDPDSEVIALSPK---TLLATNRFVCEIC-----NKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCP  109 (241)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~C~~C-----~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~  109 (241)
                      .+..++..+.....+..|..   .+.++++|.|.+|     ++.|.....|..|++.|.             ++++|.|.
T Consensus         5 ~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~-------------~~~~~~C~   71 (155)
T 2gli_A            5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT-------------GEKPHKCT   71 (155)
T ss_dssp             CBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHH-------------CCCCCCCC
T ss_pred             CcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcC-------------CCCCccCC
Confidence            45677888888888999987   7888899998753     499999999999999998             78999998


Q ss_pred             C--CCcccCCCCCcCCChhhHhhhhccccCCceeeccc--ccccccchhhHHHHH-HHh-CCcceec--C-CCCCcCCcc
Q 026210          110 E--STCVHHNPARALGDLTGIKKHFSRKHGEKKYKCER--CSKKYAVQSDWKAHM-KTC-GTREYKC--D-CGTIFSRRD  180 (241)
Q Consensus       110 ~--C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~--C~k~f~~~~~L~~H~-~~~-~~k~~~C--~-C~k~f~~~~  180 (241)
                      +  |       ++.|.....|..|+++|+++++|.|.+  |++.|.+...|..|+ +.| ++++|.|  . |++.|.+..
T Consensus        72 ~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~  144 (155)
T 2gli_A           72 FEGC-------RKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPS  144 (155)
T ss_dssp             STTC-------CCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHH
T ss_pred             CCCC-------CCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHH
Confidence            6  8       999999999999999999999999998  999999999999999 554 7899999  4 999999999


Q ss_pred             hHHHHHHhccC
Q 026210          181 SFITHRAFCDA  191 (241)
Q Consensus       181 ~L~~H~~~~~~  191 (241)
                      .|..|+++||+
T Consensus       145 ~L~~H~~~hhg  155 (155)
T 2gli_A          145 SLRKHVKTVHG  155 (155)
T ss_dssp             HHHHHHHHSCC
T ss_pred             HHHHHHHhhcC
Confidence            99999999985

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.90  E-value=3.4e-24  Score=164.23  Aligned_cols=138  Identities=22%  Similarity=0.346  Sum_probs=122.3

Q ss_pred             ccccCC--CCCCCCCCCccccccCccccCCCCCccc--cccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCC
Q 026210           34 TQKKKR--NLPGMPDPDSEVIALSPKTLLATNRFVC--EICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCP  109 (241)
Q Consensus        34 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~C--~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~  109 (241)
                      .....+  ..++..+.....+..|.+.|.++++|.|  ..|++.|.....|..|+++|.             ++++|.|.
T Consensus        10 ~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~   76 (190)
T 1tf6_A           10 YKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT-------------GEKNFTCD   76 (190)
T ss_dssp             CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTT-------------TCCCEECC
T ss_pred             CcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHcc-------------CCCceeCC
Confidence            344556  5788899999999999999999999999  889999999999999999998             77889999


Q ss_pred             --CCCcccCCCCCcCCChhhHhhhh-ccc-cCCceeec--ccccccccchhhHHHHHHH-hCCcceec--C-CCCCcCCc
Q 026210          110 --ESTCVHHNPARALGDLTGIKKHF-SRK-HGEKKYKC--ERCSKKYAVQSDWKAHMKT-CGTREYKC--D-CGTIFSRR  179 (241)
Q Consensus       110 --~C~c~~~~~~~~f~~~~~l~~H~-~~h-~~ek~~~C--~~C~k~f~~~~~L~~H~~~-~~~k~~~C--~-C~k~f~~~  179 (241)
                        .|       ++.|.....|..|+ +.| .++++|.|  ..|++.|.....|..|+++ +++++|.|  + |++.|.+.
T Consensus        77 ~~~C-------~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~  149 (190)
T 1tf6_A           77 SDGC-------DLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLP  149 (190)
T ss_dssp             SSSC-------CCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSH
T ss_pred             CCCC-------CCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCH
Confidence              78       89999999999998 666 46789999  8899999999999999998 58899999  5 99999999


Q ss_pred             chHHHHHHhccC
Q 026210          180 DSFITHRAFCDA  191 (241)
Q Consensus       180 ~~L~~H~~~~~~  191 (241)
                      ..|.+|+++|++
T Consensus       150 ~~L~~H~~~H~~  161 (190)
T 1tf6_A          150 SRLKRHEKVHAG  161 (190)
T ss_dssp             HHHHHHHTSSCS
T ss_pred             HHHHHHHHHhCC
Confidence            999999998875

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.89  E-value=4e-23  Score=153.10  Aligned_cols=121  Identities=21%  Similarity=0.322  Sum_probs=103.6

Q ss_pred             CCCCCccccccccccCChhHHHHHhhh-cCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhccccCC
Q 026210           60 LATNRFVCEICNKGFQRDQNLQLHRRG-HNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGE  138 (241)
Q Consensus        60 ~~~~~~~C~~C~~~f~~~~~L~~H~~~-h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~e  138 (241)
                      .....|.|..|++.|.+...|..|++. |.......     ......|.|.+|       ++.|.....|..|+++|+++
T Consensus        21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~-----~~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~   88 (155)
T 2rpc_A           21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQN-----NHVCYWEECPRE-------GKSFKAKYKLVNHIRVHTGE   88 (155)
T ss_dssp             TTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCS-----SCCCCBTTCTTS-------SCCCSSHHHHHHHTHHHHCC
T ss_pred             hhhcccccccCCcccCCHHHHHHHHHhhcCCCcccC-----CccccccCCCCc-------ccccCCHHHHHHHHHhcCCC
Confidence            356789999999999999999999998 54210000     000122899999       99999999999999999999


Q ss_pred             ceeeccc--ccccccchhhHHHHHHH-hCCcceecC---CCCCcCCcchHHHHHHhccCc
Q 026210          139 KKYKCER--CSKKYAVQSDWKAHMKT-CGTREYKCD---CGTIFSRRDSFITHRAFCDAL  192 (241)
Q Consensus       139 k~~~C~~--C~k~f~~~~~L~~H~~~-~~~k~~~C~---C~k~f~~~~~L~~H~~~~~~~  192 (241)
                      ++|.|.+  |++.|.....|..|+++ +++++|.|.   |++.|.+...|.+|+++|++.
T Consensus        89 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~  148 (155)
T 2rpc_A           89 KPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD  148 (155)
T ss_dssp             CSEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSC
T ss_pred             CcccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCC
Confidence            9999998  99999999999999999 689999997   999999999999999999864

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.87  E-value=1.5e-22  Score=155.08  Aligned_cols=134  Identities=24%  Similarity=0.419  Sum_probs=121.2

Q ss_pred             cCC--CCCCCCCCCccccccCccccCCCCCcccc--ccccccCChhHHHHHh-hhcCCCchhhhcchhhhcCccccC--C
Q 026210           37 KKR--NLPGMPDPDSEVIALSPKTLLATNRFVCE--ICNKGFQRDQNLQLHR-RGHNLPWKLKQRNSKEVRKKVYVC--P  109 (241)
Q Consensus        37 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~C~--~C~~~f~~~~~L~~H~-~~h~~~~~~~~~~~~~~~~~~~~C--~  109 (241)
                      ..+  ..++..+.....+..|.++|.++++|.|.  .|++.|.....|..|+ +.|..            +.++|.|  .
T Consensus        43 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~------------~~~~~~C~~~  110 (190)
T 1tf6_A           43 FPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNI------------KICVYVCHFE  110 (190)
T ss_dssp             SCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSST------------TTSCCEECSS
T ss_pred             ccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCC------------CcceeeCCCC
Confidence            456  77899999999999999999999999999  8999999999999999 56631            5688999  8


Q ss_pred             CCCcccCCCCCcCCChhhHhhhhccccCCceeeccc--ccccccchhhHHHHHHHhCCcceec---C-CCCCcCCcchHH
Q 026210          110 ESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCER--CSKKYAVQSDWKAHMKTCGTREYKC---D-CGTIFSRRDSFI  183 (241)
Q Consensus       110 ~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~--C~k~f~~~~~L~~H~~~~~~k~~~C---~-C~k~f~~~~~L~  183 (241)
                      .|       ++.|.....|..|+++|+++++|.|.+  |++.|.....|..|+++|..  |.|   . |++.|.....|.
T Consensus       111 ~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~--~~C~~~~~C~~~f~~~~~l~  181 (190)
T 1tf6_A          111 NC-------GKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCSFVGKTWTLYL  181 (190)
T ss_dssp             SS-------CEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS--CCCCSTTTCCCCCSCHHHHH
T ss_pred             CC-------ccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC--CcCCCCCcCCCccccHHHHH
Confidence            89       999999999999999999999999988  99999999999999999543  777   3 999999999999


Q ss_pred             HHHHhccC
Q 026210          184 THRAFCDA  191 (241)
Q Consensus       184 ~H~~~~~~  191 (241)
                      .|+++|++
T Consensus       182 ~H~~~h~~  189 (190)
T 1tf6_A          182 KHVAECHQ  189 (190)
T ss_dssp             HHHTTCC-
T ss_pred             HHHHhhcC
Confidence            99999985

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.86  E-value=7.3e-22  Score=146.15  Aligned_cols=115  Identities=25%  Similarity=0.503  Sum_probs=102.7

Q ss_pred             CCCccccccccccCChhHHHHHhh---hcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhccccCC
Q 026210           62 TNRFVCEICNKGFQRDQNLQLHRR---GHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGE  138 (241)
Q Consensus        62 ~~~~~C~~C~~~f~~~~~L~~H~~---~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~e  138 (241)
                      +.+|.|..|++.|.+...|..|++   +|.             +.++|.|.+|+|..  +++.|.....|..|++.|+++
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h~h~-------------~~~~~~C~~c~C~~--c~~~f~~~~~l~~H~~~h~~~   65 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHG-------------ERKEFVCHWGGCSR--ELRPFKAQYMLVVHMRRHTGE   65 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHTSSS-------------CSSCCCCCBTTCTT--TTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhccCC-------------CCcceeCCCCCccc--hhhhhhhHHHHHHHHHhcCCC
Confidence            357999999999999999999998   565             77899999876531  158999999999999999999


Q ss_pred             ceeeccc--ccccccchhhHHHHHHH-hCCcceecC---CCCCcCCcchHHHHH-HhccC
Q 026210          139 KKYKCER--CSKKYAVQSDWKAHMKT-CGTREYKCD---CGTIFSRRDSFITHR-AFCDA  191 (241)
Q Consensus       139 k~~~C~~--C~k~f~~~~~L~~H~~~-~~~k~~~C~---C~k~f~~~~~L~~H~-~~~~~  191 (241)
                      ++|.|.+  |++.|.....|..|+++ +++++|.|.   |++.|.+...|..|+ ++|.+
T Consensus        66 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  125 (155)
T 2gli_A           66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN  125 (155)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCC
Confidence            9999985  99999999999999999 689999997   999999999999999 66654

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.86  E-value=1.5e-22  Score=146.13  Aligned_cols=84  Identities=27%  Similarity=0.521  Sum_probs=81.5

Q ss_pred             cCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-CCCCcCCc
Q 026210          102 RKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRR  179 (241)
Q Consensus       102 ~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~~  179 (241)
                      |+++|.|.+|       ++.|.....|..|+++|+++++|.|.+|++.|.....|..|+++ .++++|.|+ |++.|.+.
T Consensus        19 Gek~y~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~   91 (133)
T 2lt7_A           19 GRVYYICIVC-------KRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINY   91 (133)
T ss_dssp             TEEEEEETTT-------CCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSH
T ss_pred             CCcCeECCCC-------CCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCH
Confidence            8999999999       99999999999999999999999999999999999999999999 599999999 99999999


Q ss_pred             chHHHHHHhccCc
Q 026210          180 DSFITHRAFCDAL  192 (241)
Q Consensus       180 ~~L~~H~~~~~~~  192 (241)
                      ..|..|+++||+.
T Consensus        92 ~~L~~H~~~hh~~  104 (133)
T 2lt7_A           92 QFMSSHIKSVHSQ  104 (133)
T ss_dssp             HHHHHHHHHHTCC
T ss_pred             HHHHHHhHHhcCC
Confidence            9999999999864

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.83  E-value=1.6e-20  Score=130.12  Aligned_cols=91  Identities=23%  Similarity=0.518  Sum_probs=80.7

Q ss_pred             CCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCc
Q 026210           60 LATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEK  139 (241)
Q Consensus        60 ~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek  139 (241)
                      ..+++|.|.+|++.|.....|..|++.|.             ++++|.|.+|       ++.|.....|..|+++|++++
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~   72 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHT-------------DERPYTCDIC-------HKAFRRQDHLRDHRYIHSKEK   72 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHC-------------CSCCCBCSSS-------CCBCSCHHHHHHHGGGSCCCC
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcC-------------CCCCcCCCCc-------cchhCCHHHHHHHHHHhCCCC
Confidence            34678999999999999999999999988             7788999999       899999999999999999999


Q ss_pred             eeecccccccccchhhHHHHHHH-hCCcceec
Q 026210          140 KYKCERCSKKYAVQSDWKAHMKT-CGTREYKC  170 (241)
Q Consensus       140 ~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C  170 (241)
                      +|.|.+|++.|.....|..|+++ +++++|.+
T Consensus        73 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           73 PFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             TTSCSSSCCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             CeECCCcCCcccCHHHHHHHHHHhCCCCCCcC
Confidence            99999999999999999999988 57887754

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.83  E-value=6.5e-21  Score=141.12  Aligned_cols=119  Identities=21%  Similarity=0.321  Sum_probs=108.7

Q ss_pred             CccccCCCCCCCCCCCccccccCccc-cCCCCC--------ccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcC
Q 026210           33 PTQKKKRNLPGMPDPDSEVIALSPKT-LLATNR--------FVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRK  103 (241)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~  103 (241)
                      ......+..++..+.....+..|... |....+        |.|..|++.|.....|..|++.|.             ++
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~   88 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT-------------GE   88 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHH-------------CC
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcC-------------CC
Confidence            34556788899999999999999887 766654        899999999999999999999998             78


Q ss_pred             ccccCCC--CCcccCCCCCcCCChhhHhhhhccccCCceeeccc--ccccccchhhHHHHHHH-hCCcceecC
Q 026210          104 KVYVCPE--STCVHHNPARALGDLTGIKKHFSRKHGEKKYKCER--CSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       104 ~~~~C~~--C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~--C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      ++|.|.+  |       ++.|.....|..|+++|+++++|.|.+  |++.|.....|..|+++ +++++|.|.
T Consensus        89 ~~~~C~~~~C-------~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A           89 KPFPCPFPGC-------GKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             CSEECSCTTT-------CCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             CcccCCcCCC-------CCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            9999998  8       999999999999999999999999997  99999999999999999 699999984

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.82  E-value=2.5e-20  Score=126.72  Aligned_cols=84  Identities=20%  Similarity=0.377  Sum_probs=50.3

Q ss_pred             cCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-CCCCcCCc
Q 026210          102 RKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRR  179 (241)
Q Consensus       102 ~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~~  179 (241)
                      ++++|.|.+|       ++.|.....|..|++.|+++++|.|.+|++.|.....|..|+++ +++++|.|. |++.|...
T Consensus         5 ~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~   77 (96)
T 2dmd_A            5 SSGPHKCEVC-------GKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNS   77 (96)
T ss_dssp             CCCCCCBTTT-------TBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSH
T ss_pred             CCcCeECCCC-------CCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCH
Confidence            3455555555       55555555566665555555666666666666666666666665 455566666 66666666


Q ss_pred             chHHHHHHhccCc
Q 026210          180 DSFITHRAFCDAL  192 (241)
Q Consensus       180 ~~L~~H~~~~~~~  192 (241)
                      ..|..|+++|++.
T Consensus        78 ~~l~~H~~~h~~~   90 (96)
T 2dmd_A           78 SQLTVHLRSHTGD   90 (96)
T ss_dssp             HHHHHHHTTCCSC
T ss_pred             HHHHHHHHHhcCC
Confidence            6666666666543

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.82  E-value=3.2e-20  Score=130.53  Aligned_cols=100  Identities=15%  Similarity=0.262  Sum_probs=85.5

Q ss_pred             ccccccCccccCCCCCccccccccccCChhHHHHHhhh--cCCCchhhhcchhhhcCccc-cCCCCCcccCCCCCcC--C
Q 026210           49 SEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRG--HNLPWKLKQRNSKEVRKKVY-VCPESTCVHHNPARAL--G  123 (241)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~--h~~~~~~~~~~~~~~~~~~~-~C~~C~c~~~~~~~~f--~  123 (241)
                      ...+..|.++|.++++|.|.+|++.|.....|..|++.  |.             ..+++ .|.+|       ++.|  .
T Consensus         4 ~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~-------------~~~~~~~C~~C-------~~~f~f~   63 (115)
T 2dmi_A            4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHY-------------RDDNHETDNNN-------PKRWSKP   63 (115)
T ss_dssp             CCCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCC-------------BCSCCCCCCCC-------CSCCSSC
T ss_pred             chhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCcc-------------ccCCCccCCCC-------Ccccccc
Confidence            34578889999999999999999999999999999998  55             44544 59999       7777  8


Q ss_pred             ChhhHhhhhccccCCceeecccccccccchhhHHHHHHH-hCCcce
Q 026210          124 DLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREY  168 (241)
Q Consensus       124 ~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~  168 (241)
                      ....|..|+++|+++++|.|.+|++.|.....|..|+++ |.....
T Consensus        64 ~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~~~  109 (115)
T 2dmi_A           64 RKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKV  109 (115)
T ss_dssp             CCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTTTCS
T ss_pred             cHHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHHhCCcccC
Confidence            889999999999999999999999999999999999988 544433

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.81  E-value=2.4e-20  Score=130.14  Aligned_cols=91  Identities=29%  Similarity=0.616  Sum_probs=84.0

Q ss_pred             cCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-CCCCcCCc
Q 026210          102 RKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRR  179 (241)
Q Consensus       102 ~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~~  179 (241)
                      ++++|.| .|       ++.|.....|..|++.|+++++|.|.+|++.|.....|..|+++ +++++|.|. |++.|...
T Consensus         7 ~~k~~~C-~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~   78 (110)
T 2csh_A            7 GDKLYPC-QC-------GKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWR   78 (110)
T ss_dssp             CCCCEEC-TT-------SCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCH
T ss_pred             CCCCEec-cC-------CCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCH
Confidence            7899999 89       99999999999999999999999999999999999999999999 689999999 99999999


Q ss_pred             chHHHHHHhccCchhhhcccC
Q 026210          180 DSFITHRAFCDALAEESARTR  200 (241)
Q Consensus       180 ~~L~~H~~~~~~~~~~~~~~~  200 (241)
                      ..|.+|++.|+..........
T Consensus        79 ~~l~~H~~~~~~~~~~~~~~~   99 (110)
T 2csh_A           79 DSFHRHVTSCTKSYEAAKAEQ   99 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHccccccchhhcc
Confidence            999999999997655544333

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.81  E-value=3.7e-20  Score=125.88  Aligned_cols=62  Identities=23%  Similarity=0.434  Sum_probs=45.2

Q ss_pred             hhhcCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHH-hCCcc
Q 026210           99 KEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTRE  167 (241)
Q Consensus        99 ~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~  167 (241)
                      .+.++++|.|.+|       ++.|.....|..|+++|+++++|.|.+|++.|.....|..|+++ ++++.
T Consensus        30 ~h~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   92 (96)
T 2dmd_A           30 CHTGVKPYKCKTC-------DYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSG   92 (96)
T ss_dssp             GCCCCCSEECSSS-------CCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHHHTTCCSCCC
T ss_pred             hcCCCCCEeCCCC-------CCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHhcCCCC
Confidence            3445667777777       77777777777777777777777777777777777777777777 45543

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.81  E-value=3.9e-20  Score=128.45  Aligned_cols=95  Identities=17%  Similarity=0.208  Sum_probs=83.4

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhc
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFS  133 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~  133 (241)
                      .+.+.+.++++|.|.+|++.|.....|..|++.|.               ++|.|.+|       ++.|.....|..|++
T Consensus         6 s~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~---------------~~~~C~~C-------~~~f~~~~~l~~H~~   63 (107)
T 1wjp_A            6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR---------------NAAVCPYC-------SLRFFSPELKQEHES   63 (107)
T ss_dssp             CCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH---------------HSBCCTTT-------CCCBSSHHHHHHHHH
T ss_pred             ccCcccCCCcCeECCCCCCccCCHHHHHHHHHHCC---------------CCccCCCC-------CCccCCHHHHHHHHH
Confidence            34567788899999999999999999999999884               57999999       999999999999995


Q ss_pred             cccCCceeecccccccccchhhHHHHHH-Hh-CCcceecC
Q 026210          134 RKHGEKKYKCERCSKKYAVQSDWKAHMK-TC-GTREYKCD  171 (241)
Q Consensus       134 ~h~~ek~~~C~~C~k~f~~~~~L~~H~~-~~-~~k~~~C~  171 (241)
                       |+++++|.|.+|++.|.....|..|++ .| ++++|.|.
T Consensus        64 -H~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           64 -KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             -HCSTGGGEEGGGTEECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             -cCCCCCccCccccchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence             999999999999999999999999998 44 77888763

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.81  E-value=5e-20  Score=131.01  Aligned_cols=113  Identities=19%  Similarity=0.360  Sum_probs=103.0

Q ss_pred             cccCCCCCCCCCCCccccccCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcc
Q 026210           35 QKKKRNLPGMPDPDSEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCV  114 (241)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~  114 (241)
                      ....+..++..+.....+..|.+.|.++++|.|..|++.|.....|..|++.|..          ..++++|.|.+|   
T Consensus         6 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~----------~~~~~~~~C~~C---   72 (124)
T 2dlq_A            6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCM----------NRSEQVFTCSVC---   72 (124)
T ss_dssp             SSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCC----------CSCCCCEECSSS---
T ss_pred             CCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhc----------CCCCCCeECCCC---
Confidence            4467889999999999999999999999999999999999999999999986421          016789999999   


Q ss_pred             cCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHH-hC
Q 026210          115 HHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CG  164 (241)
Q Consensus       115 ~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~  164 (241)
                          ++.|.....|..|+++|+++++|.|.+|++.|.....|..|++. |+
T Consensus        73 ----~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  119 (124)
T 2dlq_A           73 ----QETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS  119 (124)
T ss_dssp             ----CCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSS
T ss_pred             ----CCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCC
Confidence                99999999999999999999999999999999999999999987 64

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.80  E-value=8.1e-20  Score=126.51  Aligned_cols=84  Identities=21%  Similarity=0.490  Sum_probs=80.5

Q ss_pred             cCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-CCCCcCCc
Q 026210          102 RKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRR  179 (241)
Q Consensus       102 ~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~~  179 (241)
                      .+++|.|.+|       ++.|.....|..|++.|+++++|.|.+|++.|.....|..|+++ +++++|.|. |++.|.+.
T Consensus        14 ~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~   86 (106)
T 2ee8_A           14 TKKEFICKFC-------GRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQS   86 (106)
T ss_dssp             CCCCCBCSSS-------CCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSH
T ss_pred             CCcCeECCCC-------CCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCH
Confidence            5788999999       99999999999999999999999999999999999999999999 688999999 99999999


Q ss_pred             chHHHHHHhccCc
Q 026210          180 DSFITHRAFCDAL  192 (241)
Q Consensus       180 ~~L~~H~~~~~~~  192 (241)
                      ..|..|+++|++.
T Consensus        87 ~~L~~H~~~H~~~   99 (106)
T 2ee8_A           87 RTLAVHKTLHMQT   99 (106)
T ss_dssp             HHHHHHHHHTTSC
T ss_pred             HHHHHHHHHhCCC
Confidence            9999999999865

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.79  E-value=6e-20  Score=121.01  Aligned_cols=80  Identities=25%  Similarity=0.555  Sum_probs=76.4

Q ss_pred             cccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-CCCCcCCcchH
Q 026210          105 VYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSF  182 (241)
Q Consensus       105 ~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~~~~L  182 (241)
                      +|.|.+|       ++.|.....|..|++.|.++++|.|.+|++.|.....|..|++. +++++|.|. |++.|.+...|
T Consensus         1 ~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   73 (82)
T 2kmk_A            1 SFDCKIC-------GKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNL   73 (82)
T ss_dssp             CEECSSS-------CCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHH
T ss_pred             CccCCCC-------cccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHH
Confidence            5889999       99999999999999999999999999999999999999999999 799999999 99999999999


Q ss_pred             HHHHHhccC
Q 026210          183 ITHRAFCDA  191 (241)
Q Consensus       183 ~~H~~~~~~  191 (241)
                      ..|+++|++
T Consensus        74 ~~H~~~H~g   82 (82)
T 2kmk_A           74 ITHSRKHTG   82 (82)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHhhCC
Confidence            999999863

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.79  E-value=7.6e-20  Score=122.76  Aligned_cols=83  Identities=24%  Similarity=0.640  Sum_probs=77.9

Q ss_pred             CccccCC--CCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-CCCCcCC
Q 026210          103 KKVYVCP--ESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSR  178 (241)
Q Consensus       103 ~~~~~C~--~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~  178 (241)
                      +++|.|.  .|       ++.|.....|..|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|. |++.|..
T Consensus         2 ~k~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   74 (90)
T 1a1h_A            2 ERPYACPVESC-------DRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR   74 (90)
T ss_dssp             -CCEECCSSSC-------CCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESS
T ss_pred             CCceECCCCCC-------CCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCC
Confidence            5789998  58       99999999999999999999999999999999999999999999 799999999 9999999


Q ss_pred             cchHHHHHHhccCc
Q 026210          179 RDSFITHRAFCDAL  192 (241)
Q Consensus       179 ~~~L~~H~~~~~~~  192 (241)
                      ...|..|+++|++.
T Consensus        75 ~~~l~~H~~~H~~~   88 (90)
T 1a1h_A           75 SDERKRHTKIHLRQ   88 (90)
T ss_dssp             HHHHHHHHGGGGC-
T ss_pred             HHHHHHHHHHhccc
Confidence            99999999999864

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.79  E-value=5.5e-20  Score=129.90  Aligned_cols=107  Identities=21%  Similarity=0.401  Sum_probs=100.0

Q ss_pred             cCCCC--CCCCCCCccccccCccccCCCCCcccc--ccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCC
Q 026210           37 KKRNL--PGMPDPDSEVIALSPKTLLATNRFVCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPEST  112 (241)
Q Consensus        37 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~  112 (241)
                      ..+..  ++..+.....+..|.+.|.++++|.|.  .|++.|.....|..|++.|.             ++++|.|.+| 
T Consensus         7 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-   72 (119)
T 2jp9_A            7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT-------------GVKPFQCKTC-   72 (119)
T ss_dssp             BCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHH-------------CCCCEECTTT-
T ss_pred             eeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcC-------------CCCCccCCcc-
Confidence            45664  888888999999999999999999999  79999999999999999998             7899999999 


Q ss_pred             cccCCCCCcCCChhhHhhhhccccCCceeec--ccccccccchhhHHHHHHHh
Q 026210          113 CVHHNPARALGDLTGIKKHFSRKHGEKKYKC--ERCSKKYAVQSDWKAHMKTC  163 (241)
Q Consensus       113 c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C--~~C~k~f~~~~~L~~H~~~~  163 (241)
                            ++.|.....|..|+++|+++++|.|  ..|++.|.+...|..|+++|
T Consensus        73 ------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           73 ------QRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             ------CCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             ------CchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence                  9999999999999999999999999  89999999999999999864

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.79  E-value=4.7e-21  Score=134.82  Aligned_cols=96  Identities=13%  Similarity=0.198  Sum_probs=87.8

Q ss_pred             hhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhcc--ccCCceee-cccccccc--c
Q 026210           77 DQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSR--KHGEKKYK-CERCSKKY--A  151 (241)
Q Consensus        77 ~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~--h~~ek~~~-C~~C~k~f--~  151 (241)
                      ...|..|+++|.             ++++|.|.+|       ++.|.....|..|+++  |.+++++. |.+|++.|  .
T Consensus         4 ~~~l~~H~~~H~-------------~~~~~~C~~C-------~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~   63 (115)
T 2dmi_A            4 GSSGKLYGSIFT-------------GASKFRCKDC-------SAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKP   63 (115)
T ss_dssp             CCCCCCCCCCCC-------------CCCSEEBSSS-------SCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSC
T ss_pred             chhhhhheeeeC-------------CCCCEECCcc-------CchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccc
Confidence            456888999998             8899999999       9999999999999998  87777665 99999999  9


Q ss_pred             chhhHHHHHHH-hCCcceecC-CCCCcCCcchHHHHHHhccCc
Q 026210          152 VQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITHRAFCDAL  192 (241)
Q Consensus       152 ~~~~L~~H~~~-~~~k~~~C~-C~k~f~~~~~L~~H~~~~~~~  192 (241)
                      ....|..|+++ +++++|.|. |++.|.....|.+|+++|+..
T Consensus        64 ~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~  106 (115)
T 2dmi_A           64 RKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHY  106 (115)
T ss_dssp             CCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTT
T ss_pred             cHHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHHhCCc
Confidence            99999999999 689999999 999999999999999999865

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.79  E-value=4.9e-20  Score=131.22  Aligned_cols=110  Identities=21%  Similarity=0.357  Sum_probs=97.0

Q ss_pred             CCC--CCCCCCCCccccccCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC--CCc
Q 026210           38 KRN--LPGMPDPDSEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE--STC  113 (241)
Q Consensus        38 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~--C~c  113 (241)
                      .+.  .++..+.....+..|.+.| +.++|.|..|++.|.....|..|++.|.             ++++|.|.+  |  
T Consensus         7 ~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C--   70 (124)
T 1ubd_C            7 ACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHT-------------GEKPFQCTFEGC--   70 (124)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTS-------------CCCCEECCSTTC--
T ss_pred             cCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcC-------------CCCCeeCCCCCC--
Confidence            444  6777888888899999988 8899999999999999999999999998             789999986  8  


Q ss_pred             ccCCCCCcCCChhhHhhhhccccCCceeecc--cccccccchhhHHHHHHH-hCCcce
Q 026210          114 VHHNPARALGDLTGIKKHFSRKHGEKKYKCE--RCSKKYAVQSDWKAHMKT-CGTREY  168 (241)
Q Consensus       114 ~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~--~C~k~f~~~~~L~~H~~~-~~~k~~  168 (241)
                           ++.|.....|..|+++|+++++|.|.  .|++.|.+...|..|+++ ++++++
T Consensus        71 -----~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           71 -----GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             -----CCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             -----cCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence                 99999999999999999999999995  599999999999999999 577765

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.79  E-value=1.7e-19  Score=125.81  Aligned_cols=85  Identities=20%  Similarity=0.459  Sum_probs=81.4

Q ss_pred             ccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhccccC
Q 026210           58 TLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHG  137 (241)
Q Consensus        58 ~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~  137 (241)
                      .|.++++|.| .|++.|.....|..|++.|.             ++++|.|.+|       ++.|.....|..|+++|++
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~   62 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHL-------------GLRPYGCGVC-------GKKFKMKHHLVGHMKIHTG   62 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHS-------------CCCSEECTTT-------SCEESSSHHHHHHHTTTCC
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcC-------------CCcCccCCCC-------CcccCCHHHHHHHHHHcCC
Confidence            5778899999 99999999999999999998             7899999999       9999999999999999999


Q ss_pred             CceeecccccccccchhhHHHHHHHh
Q 026210          138 EKKYKCERCSKKYAVQSDWKAHMKTC  163 (241)
Q Consensus       138 ek~~~C~~C~k~f~~~~~L~~H~~~~  163 (241)
                      +++|.|.+|++.|.....|..|++.|
T Consensus        63 ~~~~~C~~C~~~f~~~~~l~~H~~~~   88 (110)
T 2csh_A           63 IKPYECNICAKRFMWRDSFHRHVTSC   88 (110)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHHHH
T ss_pred             CCCeeCCCCcchhcCHHHHHHHHHHc
Confidence            99999999999999999999999984

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.78  E-value=2.8e-19  Score=121.25  Aligned_cols=80  Identities=25%  Similarity=0.532  Sum_probs=54.4

Q ss_pred             cCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHH-hCC--cceecC-CCCCcC
Q 026210          102 RKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGT--REYKCD-CGTIFS  177 (241)
Q Consensus       102 ~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~--k~~~C~-C~k~f~  177 (241)
                      ++++|.|.+|       ++.|.....|..|+++|+++++|.|.+|++.|.....|..|++. +++  ++|.|. |++.|.
T Consensus         4 ~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~   76 (95)
T 2yt9_A            4 GSSGVACEIC-------GKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFS   76 (95)
T ss_dssp             CCSCEECSSS-------CCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBS
T ss_pred             CCCCeECCCC-------CCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhC
Confidence            4566666666       66666666666666666666677777777777777777777766 444  667777 777777


Q ss_pred             CcchHHHHHHh
Q 026210          178 RRDSFITHRAF  188 (241)
Q Consensus       178 ~~~~L~~H~~~  188 (241)
                      +...|..|++.
T Consensus        77 ~~~~L~~H~~~   87 (95)
T 2yt9_A           77 RPDHLNGHIKQ   87 (95)
T ss_dssp             SHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            77777777653

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.78  E-value=1.2e-19  Score=121.69  Aligned_cols=85  Identities=25%  Similarity=0.554  Sum_probs=78.6

Q ss_pred             CCCcccc--ccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCc
Q 026210           62 TNRFVCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEK  139 (241)
Q Consensus        62 ~~~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek  139 (241)
                      +++|.|.  .|++.|.....|..|++.|.             ++++|.|..|       ++.|.....|..|+++|++++
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~   61 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHT-------------GQKPFQCRIC-------MRNFSRSDHLTTHIRTHTGEK   61 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHH-------------CCCCEECTTT-------CCEESCHHHHHHHHHHHHCCC
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhC-------------CCCCccCCCC-------CcccCCHHHHHHHHHHcCCCC
Confidence            5789998  69999999999999999998             7899999999       999999999999999999999


Q ss_pred             eeecccccccccchhhHHHHHHH-hCCc
Q 026210          140 KYKCERCSKKYAVQSDWKAHMKT-CGTR  166 (241)
Q Consensus       140 ~~~C~~C~k~f~~~~~L~~H~~~-~~~k  166 (241)
                      +|.|.+|++.|.....|..|+++ ++++
T Consensus        62 ~~~C~~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           62 PFACDICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             CEECTTTCCEESSHHHHHHHHGGGGC--
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcccC
Confidence            99999999999999999999999 5654

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.77  E-value=4.1e-19  Score=120.42  Aligned_cols=54  Identities=30%  Similarity=0.586  Sum_probs=26.9

Q ss_pred             CCceeecccccccccchhhHHHHHHH-hCCcceecC-CCCCcCCcchHHHHHHhcc
Q 026210          137 GEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITHRAFCD  190 (241)
Q Consensus       137 ~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~~~~L~~H~~~~~  190 (241)
                      ++++|.|.+|++.|.....|..|+++ +++++|.|. |++.|.....|..|++.|+
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   59 (95)
T 2yt9_A            4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHD   59 (95)
T ss_dssp             CCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHC
T ss_pred             CCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhc
Confidence            34445555555555555555555544 344455555 5555555555555555444

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.77  E-value=1.7e-19  Score=118.82  Aligned_cols=80  Identities=30%  Similarity=0.572  Sum_probs=77.1

Q ss_pred             CccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeec
Q 026210           64 RFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKC  143 (241)
Q Consensus        64 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C  143 (241)
                      +|.|..|++.|.....|..|++.|.             ++++|.|..|       ++.|.....|..|++.|+++++|.|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C   60 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHS-------------DTRPYPCQYC-------GKRFHQKSDMKKHTFIHTGEKPHKC   60 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHH-------------TCCCEECSSS-------CCEESSHHHHHHHHHHHHTCCCEEC
T ss_pred             CccCCCCcccccCchhHHHHHHHcC-------------CCCCeeCCcC-------ChhhCCHHHHHHHHHHhcCCCCCcC
Confidence            5899999999999999999999997             7899999999       9999999999999999999999999


Q ss_pred             ccccccccchhhHHHHHHHh
Q 026210          144 ERCSKKYAVQSDWKAHMKTC  163 (241)
Q Consensus       144 ~~C~k~f~~~~~L~~H~~~~  163 (241)
                      .+|++.|.+...|..|+++|
T Consensus        61 ~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A           61 QVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             TTTSCEESSHHHHHHHHHHH
T ss_pred             CCcchhhCChHHHHHHHHhh
Confidence            99999999999999999985

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.75  E-value=7.3e-19  Score=121.97  Aligned_cols=80  Identities=21%  Similarity=0.323  Sum_probs=74.4

Q ss_pred             cCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHHhCCcceecC-CCCCcCCcc
Q 026210          102 RKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCD-CGTIFSRRD  180 (241)
Q Consensus       102 ~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~~~~k~~~C~-C~k~f~~~~  180 (241)
                      ++++|.|.+|       ++.|.....|..|+++|  +++|.|.+|++.|.....|..|++.+++++|.|. |++.|....
T Consensus        13 ~~~~~~C~~C-------~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~H~~~~~~~C~~C~~~f~~~~   83 (107)
T 1wjp_A           13 NKEVYQCRLC-------NAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCLECMRTFKSSF   83 (107)
T ss_dssp             CCCCCBCTTT-------CCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHHHCSTGGGEEGGGTEECSSHH
T ss_pred             CCcCeECCCC-------CCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHHcCCCCCccCccccchhCCHH
Confidence            7899999999       99999999999999998  5799999999999999999999963588999999 999999999


Q ss_pred             hHHHHHHhcc
Q 026210          181 SFITHRAFCD  190 (241)
Q Consensus       181 ~L~~H~~~~~  190 (241)
                      .|.+|++.+|
T Consensus        84 ~L~~H~~~~H   93 (107)
T 1wjp_A           84 SIWRHQVEVH   93 (107)
T ss_dssp             HHHHHHHHTS
T ss_pred             HHHHHHHHHc
Confidence            9999998444

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.74  E-value=3.6e-18  Score=116.74  Aligned_cols=83  Identities=24%  Similarity=0.592  Sum_probs=78.1

Q ss_pred             cCccccCCC--CCcccCCCCCcCCChhhHhhhhccccCCceeecc--cccccccchhhHHHHHHH-hCCcceecC-CCCC
Q 026210          102 RKKVYVCPE--STCVHHNPARALGDLTGIKKHFSRKHGEKKYKCE--RCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTI  175 (241)
Q Consensus       102 ~~~~~~C~~--C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~--~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~  175 (241)
                      ..+.|.|.+  |       ++.|.....|..|++.|+++++|.|.  .|++.|.....|..|+++ +++++|.|. |++.
T Consensus        12 ~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   84 (100)
T 2ebt_A           12 KRRIHYCDYPGC-------TKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRS   84 (100)
T ss_dssp             SCCCEECCSSSC-------CCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCB
T ss_pred             cCcceEcCCCCC-------CCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCc
Confidence            567899997  8       99999999999999999999999996  699999999999999999 689999999 9999


Q ss_pred             cCCcchHHHHHHhccC
Q 026210          176 FSRRDSFITHRAFCDA  191 (241)
Q Consensus       176 f~~~~~L~~H~~~~~~  191 (241)
                      |.....|..|+++|.+
T Consensus        85 f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           85 FSRSDHLALHMKRHQN  100 (100)
T ss_dssp             CSSHHHHHHHHHHHCC
T ss_pred             cCCHHHHHHHHHHhCC
Confidence            9999999999999863

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.73  E-value=1.3e-19  Score=121.23  Aligned_cols=84  Identities=20%  Similarity=0.331  Sum_probs=79.1

Q ss_pred             CccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHHhCCcceecC-CCCCcCCcch
Q 026210          103 KKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCD-CGTIFSRRDS  181 (241)
Q Consensus       103 ~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~~~~k~~~C~-C~k~f~~~~~  181 (241)
                      +++|.|.+|       ++.|.....|..|+++|+++++|.|.+|++.|.....|..|++.|..++|.|. |++.|.....
T Consensus         1 ek~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~~~~~   73 (88)
T 1llm_C            1 MKPFQCRIC-------MRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYH   73 (88)
T ss_dssp             CCCEECTTT-------CCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCC-------CCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhh
Confidence            468999999       99999999999999999999999999999999999999999999656999999 9999999999


Q ss_pred             HHHHHHhccCch
Q 026210          182 FITHRAFCDALA  193 (241)
Q Consensus       182 L~~H~~~~~~~~  193 (241)
                      |..|++.+|+..
T Consensus        74 L~~H~~~~h~~~   85 (88)
T 1llm_C           74 LENEVARLKKLV   85 (88)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHh
Confidence            999999988653

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.73  E-value=2.1e-18  Score=106.35  Aligned_cols=55  Identities=25%  Similarity=0.515  Sum_probs=44.8

Q ss_pred             CceeecccccccccchhhHHHHHHH-hCCcceecC-CCCCcCCcchHHHHHHhccCc
Q 026210          138 EKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITHRAFCDAL  192 (241)
Q Consensus       138 ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~~~~L~~H~~~~~~~  192 (241)
                      ||||.|.+||+.|.....|..|+++ .|+++|.|. |++.|...+.|.+|+++|.+.
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCC
Confidence            6788888888888888888888888 488888888 888888888888888887653

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.73  E-value=4.4e-18  Score=113.78  Aligned_cols=81  Identities=27%  Similarity=0.595  Sum_probs=76.2

Q ss_pred             cCccccCCC--CCcccCCCCCcCCChhhHhhhhccccCCceeecc--cccccccchhhHHHHHHH-hCCcceecC-CCCC
Q 026210          102 RKKVYVCPE--STCVHHNPARALGDLTGIKKHFSRKHGEKKYKCE--RCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTI  175 (241)
Q Consensus       102 ~~~~~~C~~--C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~--~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~  175 (241)
                      +...|.|.+  |       ++.|.....|..|++.|+++++|.|.  .|++.|.....|..|++. +++++|.|. |++.
T Consensus         2 ~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   74 (89)
T 2wbs_A            2 RTATHTCDYAGC-------GKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRA   74 (89)
T ss_dssp             -CCCEECCSTTT-------CCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCE
T ss_pred             CCCCeeCCCCCC-------CCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcc
Confidence            356799999  8       99999999999999999999999997  699999999999999999 699999999 9999


Q ss_pred             cCCcchHHHHHHhc
Q 026210          176 FSRRDSFITHRAFC  189 (241)
Q Consensus       176 f~~~~~L~~H~~~~  189 (241)
                      |.....|..|+++|
T Consensus        75 f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           75 FSRSDHLALHMKRH   88 (89)
T ss_dssp             ESSHHHHHHHGGGG
T ss_pred             cCCHHHHHHHHHhh
Confidence            99999999999987

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.73  E-value=3.8e-18  Score=114.10  Aligned_cols=82  Identities=22%  Similarity=0.622  Sum_probs=77.6

Q ss_pred             CCCccccc--cccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCC--CCCcccCCCCCcCCChhhHhhhhccccC
Q 026210           62 TNRFVCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCP--ESTCVHHNPARALGDLTGIKKHFSRKHG  137 (241)
Q Consensus        62 ~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~--~C~c~~~~~~~~f~~~~~l~~H~~~h~~  137 (241)
                      .+.|.|..  |++.|.....|..|++.|.             ++++|.|.  .|       ++.|.....|..|+++|++
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~   62 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHT-------------GEKPYHCDWDGC-------GWKFARSDELTRHYRKHTG   62 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSC-------------SSCCEECCSTTT-------CCEESSHHHHHHHHHHHHC
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcC-------------CCCCcCCCCCCC-------CCccCCHHHHHHHHHHcCC
Confidence            46899999  9999999999999999998             78999997  58       9999999999999999999


Q ss_pred             CceeecccccccccchhhHHHHHHHh
Q 026210          138 EKKYKCERCSKKYAVQSDWKAHMKTC  163 (241)
Q Consensus       138 ek~~~C~~C~k~f~~~~~L~~H~~~~  163 (241)
                      +++|.|.+|++.|.....|..|+++|
T Consensus        63 ~~~~~C~~C~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           63 HRPFQCQKCDRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHGGGG
T ss_pred             CCCccCCCCCcccCCHHHHHHHHHhh
Confidence            99999999999999999999999875

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.72  E-value=6.5e-18  Score=115.47  Aligned_cols=83  Identities=22%  Similarity=0.559  Sum_probs=78.1

Q ss_pred             CCCCccccc--cccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCC--CCCcccCCCCCcCCChhhHhhhhcccc
Q 026210           61 ATNRFVCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCP--ESTCVHHNPARALGDLTGIKKHFSRKH  136 (241)
Q Consensus        61 ~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~--~C~c~~~~~~~~f~~~~~l~~H~~~h~  136 (241)
                      ..+.|.|..  |++.|.....|..|++.|.             ++++|.|.  .|       ++.|.....|..|+++|+
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~   71 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHT-------------GEKPYKCTWEGC-------DWRFARSDELTRHYRKHT   71 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHS-------------CCCCEECCSSSC-------CCEESSHHHHHHHHHHHT
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhC-------------CCCCeeCCCCCC-------CCccCCHHHHHHHHHHhC
Confidence            457899996  9999999999999999998             78999997  58       999999999999999999


Q ss_pred             CCceeecccccccccchhhHHHHHHHh
Q 026210          137 GEKKYKCERCSKKYAVQSDWKAHMKTC  163 (241)
Q Consensus       137 ~ek~~~C~~C~k~f~~~~~L~~H~~~~  163 (241)
                      ++++|.|.+|++.|.....|..|+++|
T Consensus        72 ~~~~~~C~~C~~~f~~~~~l~~H~~~H   98 (100)
T 2ebt_A           72 GAKPFQCGVCNRSFSRSDHLALHMKRH   98 (100)
T ss_dssp             SCCSCBCSSSCCBCSSHHHHHHHHHHH
T ss_pred             CCCCeECCCCcCccCCHHHHHHHHHHh
Confidence            999999999999999999999999985

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.70  E-value=2.5e-18  Score=114.93  Aligned_cols=81  Identities=20%  Similarity=0.347  Sum_probs=77.0

Q ss_pred             CCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCcee
Q 026210           62 TNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKY  141 (241)
Q Consensus        62 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~  141 (241)
                      +++|.|.+|++.|.....|..|+++|.             ++++|.|.+|       ++.|.....|..|++.|++ ++|
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C-------~k~f~~~~~L~~H~~~h~~-~~~   59 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHT-------------GEKPFACDIC-------GRKFARSDERKRHRDIQHI-LPI   59 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH-------------CCCCEECTTT-------CCEESSHHHHHHHHHHHTH-HHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcC-------------CCCCccCCCC-------CCccCCHHHHHHHHHHhCC-Ccc
Confidence            478999999999999999999999998             7899999999       9999999999999999985 889


Q ss_pred             ecccccccccchhhHHHHHHH-h
Q 026210          142 KCERCSKKYAVQSDWKAHMKT-C  163 (241)
Q Consensus       142 ~C~~C~k~f~~~~~L~~H~~~-~  163 (241)
                      .|..|++.|.....|..|++. |
T Consensus        60 ~c~~C~~~f~~~~~L~~H~~~~h   82 (88)
T 1llm_C           60 LEDKVEELLSKNYHLENEVARLK   82 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHH
Confidence            999999999999999999997 5

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.70  E-value=1.1e-18  Score=125.18  Aligned_cols=120  Identities=15%  Similarity=0.260  Sum_probs=87.9

Q ss_pred             ccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhccccC
Q 026210           58 TLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHG  137 (241)
Q Consensus        58 ~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~  137 (241)
                      .+.+.++|.|..++....  ..+..|.+.+...          ..++.+.|++|...+.+ ...|.....|..|+ .|++
T Consensus         6 ~~~~~k~~~~~~k~~~~~--~s~ee~~~~~~l~----------~~~~~~~c~~~~~~~~~-~~~~~~~~~l~~h~-~h~~   71 (129)
T 2wbt_A            6 VDSGSKKYLSNHKGIFIH--VTLEELKRYHQLT----------PEQKRLIRAIVKTLIHN-PQLLDESSYLYRLL-ASKA   71 (129)
T ss_dssp             CCTTCCGGGGCSSCEEEE--CCHHHHHHHTTSC----------HHHHHHHHHHHHHHHHC-GGGTTTHHHHHHHH-HHHH
T ss_pred             hcccccccccccCCeeee--ecHHhhhccccCC----------hhhCcccchhhhcccCC-CcccCCHHHHHHHH-HhCC
Confidence            456778998877554332  2344443333210          03456677766211100 34455677777777 6999


Q ss_pred             CceeecccccccccchhhHHHHHHHhCCcceecC-CCCCcCCcchHHHHHHhccCc
Q 026210          138 EKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCD-CGTIFSRRDSFITHRAFCDAL  192 (241)
Q Consensus       138 ek~~~C~~C~k~f~~~~~L~~H~~~~~~k~~~C~-C~k~f~~~~~L~~H~~~~~~~  192 (241)
                      +++|.|.+||+.|.....|..|+++| +++|.|. |++.|...+.|.+|+++|+++
T Consensus        72 ~~~~~C~~C~k~f~~~~~l~~H~~~H-~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           72 ISQFVCPLCLMPFSSSVSLKQHIRYT-EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             HCSEECTTTCCEESSHHHHHHHHHHT-CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCCeECCCCCcccCCHhHHHHHHHHC-CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            99999999999999999999999999 9999999 999999999999999999975

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.69  E-value=1.1e-17  Score=103.02  Aligned_cols=57  Identities=25%  Similarity=0.607  Sum_probs=32.6

Q ss_pred             CCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhccccCC
Q 026210           62 TNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGE  138 (241)
Q Consensus        62 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~e  138 (241)
                      |+||+|.+||+.|.....|..|+++|+             ++++|.|.+|       ++.|.....|..|+++|+|+
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht-------------~ekp~~C~~C-------~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHL-------------GYRPRSCPEC-------GKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHH-------------TCCCEECTTT-------CCEESSHHHHHHHGGGGSCC
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhC-------------CCcCeECCCC-------CCCcCCHHHHHHHhCccCCC
Confidence            455555555555555555555555555             5555555555       55555555555555555554

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=2.7e-17  Score=112.21  Aligned_cols=74  Identities=16%  Similarity=0.224  Sum_probs=67.5

Q ss_pred             CCcCCChhhHhhhhccccCCceeeccccccccc-chhhHHHHHHH-hC-CcceecC-CCCCcCCcchHHHHHHhccCc
Q 026210          119 ARALGDLTGIKKHFSRKHGEKKYKCERCSKKYA-VQSDWKAHMKT-CG-TREYKCD-CGTIFSRRDSFITHRAFCDAL  192 (241)
Q Consensus       119 ~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~-~~~~L~~H~~~-~~-~k~~~C~-C~k~f~~~~~L~~H~~~~~~~  192 (241)
                      ...+.....+..|+++|+++++|.|.+|++.|. ....|..|+++ ++ +++|.|. |++.|.+...|.+|+++|++.
T Consensus         3 s~s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~   80 (98)
T 2gqj_A            3 SGSSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSA   80 (98)
T ss_dssp             CCCCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCS
T ss_pred             CCCCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCC
Confidence            345666677889999999999999999999999 99999999999 67 8999999 999999999999999999965

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=4.6e-17  Score=105.94  Aligned_cols=67  Identities=19%  Similarity=0.426  Sum_probs=60.9

Q ss_pred             HhhhhccccCCceeecccccccccchhhHHHHHHH-hC--CcceecC-CCCCcCCcchHHHHHHhccCchh
Q 026210          128 IKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CG--TREYKCD-CGTIFSRRDSFITHRAFCDALAE  194 (241)
Q Consensus       128 l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~--~k~~~C~-C~k~f~~~~~L~~H~~~~~~~~~  194 (241)
                      |..|+++|+++++|.|.+|++.|.....|..|++. |.  +++|.|. |++.|.+...|..|++.+|....
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~   73 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSG   73 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSC
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            56799999999999999999999999999999985 64  3899999 99999999999999999986543

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=9.7e-17  Score=104.79  Aligned_cols=69  Identities=23%  Similarity=0.485  Sum_probs=43.7

Q ss_pred             cCccccCCC--CCcccCCCCCcCCChhhHhhhhc-cccCCceeeccc--ccccccchhhHHHHHHH-hCCcceecC-CCC
Q 026210          102 RKKVYVCPE--STCVHHNPARALGDLTGIKKHFS-RKHGEKKYKCER--CSKKYAVQSDWKAHMKT-CGTREYKCD-CGT  174 (241)
Q Consensus       102 ~~~~~~C~~--C~c~~~~~~~~f~~~~~l~~H~~-~h~~ek~~~C~~--C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k  174 (241)
                      ++++|.|..  |       ++.|.....|..|++ .|.++++|.|.+  |++.|.....|..|+++ +++++|.|. |++
T Consensus         4 ~~~~~~C~~~~C-------~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k   76 (79)
T 2dlk_A            4 GSSGMPCDFPGC-------GRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGP   76 (79)
T ss_dssp             CCSSEECSSTTT-------CCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSC
T ss_pred             CCCCccCCCCCC-------cCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCC
Confidence            445566655  5       666666666666666 566666666666  66666666666666666 466666666 666


Q ss_pred             CcC
Q 026210          175 IFS  177 (241)
Q Consensus       175 ~f~  177 (241)
                      .|+
T Consensus        77 ~F~   79 (79)
T 2dlk_A           77 SSG   79 (79)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            663

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=8.4e-17  Score=106.77  Aligned_cols=68  Identities=19%  Similarity=0.468  Sum_probs=39.4

Q ss_pred             cCccccCCCCCcccCCCCCcCCChhhHhhhhccccCC----ceeecccccccccchhhHHHHHHH-hCCcceecC-CCCC
Q 026210          102 RKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGE----KKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTI  175 (241)
Q Consensus       102 ~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~e----k~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~  175 (241)
                      ++++|.|.+|       ++.|.....|..|++.|+++    ++|.|.+|++.|.....|..|+++ +++++|.|. |+..
T Consensus        12 ~~k~~~C~~C-------~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~   84 (86)
T 1x6h_A           12 GEKPYACSHC-------DKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPS   84 (86)
T ss_dssp             CCCCEECSSS-------SCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCCCCC
T ss_pred             CCCCCcCCCC-------CCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCCCCC
Confidence            5555666665       55666666666665554443    456666666666666666666665 455566665 5554


Q ss_pred             c
Q 026210          176 F  176 (241)
Q Consensus       176 f  176 (241)
                      |
T Consensus        85 ~   85 (86)
T 1x6h_A           85 S   85 (86)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=1.9e-16  Score=103.36  Aligned_cols=57  Identities=18%  Similarity=0.480  Sum_probs=52.0

Q ss_pred             cCCceeeccc--ccccccchhhHHHHHH-Hh-CCcceecC---CCCCcCCcchHHHHHHhccCc
Q 026210          136 HGEKKYKCER--CSKKYAVQSDWKAHMK-TC-GTREYKCD---CGTIFSRRDSFITHRAFCDAL  192 (241)
Q Consensus       136 ~~ek~~~C~~--C~k~f~~~~~L~~H~~-~~-~~k~~~C~---C~k~f~~~~~L~~H~~~~~~~  192 (241)
                      +++++|.|..  |++.|.....|..|++ .| ++++|.|.   |++.|.....|..|+++|++.
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   66 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDT   66 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTS
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCC
Confidence            5788999987  9999999999999999 55 88999996   999999999999999999754

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=2.9e-16  Score=104.13  Aligned_cols=83  Identities=18%  Similarity=0.336  Sum_probs=73.4

Q ss_pred             cccCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhh
Q 026210           52 IALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKH  131 (241)
Q Consensus        52 ~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H  131 (241)
                      +..|+++|.++++|.|.+|++.|.....|..|++.|+...         ..+++|.|.+|       ++.|.....|..|
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~---------~~~~~~~C~~C-------~~~f~~~~~L~~H   66 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN---------FVPAAFVCSKC-------GKTFTRRNTMARH   66 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS---------CCCCCEECSSS-------CCEESCHHHHHHH
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCc---------CCCcceECCCC-------CChhCCHHHHHHH
Confidence            5678899999999999999999999999999998876210         01278999999       9999999999999


Q ss_pred             hccccCCceeecccccccc
Q 026210          132 FSRKHGEKKYKCERCSKKY  150 (241)
Q Consensus       132 ~~~h~~ek~~~C~~C~k~f  150 (241)
                      +++|++++++.|..|+..|
T Consensus        67 ~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           67 ADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             HHHCCCCCSCCCCCCCCCC
T ss_pred             HHHccCCCCcccCCCCCCC
Confidence            9999999999999999875

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=2.5e-16  Score=106.89  Aligned_cols=73  Identities=15%  Similarity=0.292  Sum_probs=67.2

Q ss_pred             CCcCCChhhHhhhhccccCCceeecccccccc-cchhhHHHHHHHhCCcceecC-CCCCcCCcchHHHH-HHhccC
Q 026210          119 ARALGDLTGIKKHFSRKHGEKKYKCERCSKKY-AVQSDWKAHMKTCGTREYKCD-CGTIFSRRDSFITH-RAFCDA  191 (241)
Q Consensus       119 ~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f-~~~~~L~~H~~~~~~k~~~C~-C~k~f~~~~~L~~H-~~~~~~  191 (241)
                      ...|.....|..|++.|+++++|.|.+|++.| .....|..|+++|++++|.|. |++.|.....|..| +++|.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~   88 (96)
T 2ctd_A           13 PPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNS   88 (96)
T ss_dssp             CCSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCSSHHHHHHHHHHHTCC
T ss_pred             CCCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHHCCCCeECCCCCCeeCCHHHHHHHhHHhcCC
Confidence            45677788899999999999999999999999 999999999999988999999 99999999999999 877764

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.63  E-value=1.9e-16  Score=104.67  Aligned_cols=76  Identities=26%  Similarity=0.592  Sum_probs=45.2

Q ss_pred             Cccc--cccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC--CCcccCCCCCcCCChhhHhhhhccccCCc
Q 026210           64 RFVC--EICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE--STCVHHNPARALGDLTGIKKHFSRKHGEK  139 (241)
Q Consensus        64 ~~~C--~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~--C~c~~~~~~~~f~~~~~l~~H~~~h~~ek  139 (241)
                      +|.|  ..|++.|.....|..|+++|.             ++++|.|.+  |       ++.|.....|..|+++|++  
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~--   58 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHT-------------QQLPYECPHEGC-------DKRFSLPSRLKRHEKVHAG--   58 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHH-------------TTCCEECCSTTC-------CCEESSHHHHHHHHHHHHS--
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhC-------------CCCCeeCCCCCC-------cCccCCHHHHHHHHHHhCC--
Confidence            3556  556666666666666666555             455566655  5       5666666666666666655  


Q ss_pred             eeeccc---ccccccchhhHHHHHHH
Q 026210          140 KYKCER---CSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       140 ~~~C~~---C~k~f~~~~~L~~H~~~  162 (241)
                       |.|.+   |++.|.....|..|+++
T Consensus        59 -~~C~~~~~C~~~f~~~~~l~~H~~~   83 (85)
T 2j7j_A           59 -YPCKKDDSCSFVGKTWTLYLKHVAE   83 (85)
T ss_dssp             -EECCSCSSCCCEESSHHHHHHHHHH
T ss_pred             -CCCCCCCCCCCccCCHHHHHHHHHh
Confidence             56655   66666666666665554

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=2.7e-16  Score=99.07  Aligned_cols=61  Identities=30%  Similarity=0.603  Sum_probs=55.7

Q ss_pred             hccccCCceeecccccccccchhhHHHHHHH-h--CCcceecC-CCCCcCCcchHHHHHHhccCc
Q 026210          132 FSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-C--GTREYKCD-CGTIFSRRDSFITHRAFCDAL  192 (241)
Q Consensus       132 ~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~--~~k~~~C~-C~k~f~~~~~L~~H~~~~~~~  192 (241)
                      +++|+++++|.|.+|++.|.....|..|++. |  ++++|.|. |++.|.+.+.|..|++.||++
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~i   66 (66)
T 2drp_A            2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI   66 (66)
T ss_dssp             -CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC-
T ss_pred             ccccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcCC
Confidence            4678999999999999999999999999998 7  68999999 999999999999999999864

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.62  E-value=5.2e-16  Score=102.53  Aligned_cols=77  Identities=26%  Similarity=0.577  Sum_probs=71.1

Q ss_pred             cccC--CCCCcccCCCCCcCCChhhHhhhhccccCCceeeccc--ccccccchhhHHHHHHHhCCcceecC----CCCCc
Q 026210          105 VYVC--PESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCER--CSKKYAVQSDWKAHMKTCGTREYKCD----CGTIF  176 (241)
Q Consensus       105 ~~~C--~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~--C~k~f~~~~~L~~H~~~~~~k~~~C~----C~k~f  176 (241)
                      +|.|  ..|       ++.|.....|..|+++|+++++|.|.+  |++.|.....|..|+++|..  |.|.    |++.|
T Consensus         1 p~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~--~~C~~~~~C~~~f   71 (85)
T 2j7j_A            1 MYVCHFENC-------GKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCSFVG   71 (85)
T ss_dssp             CEECCSTTC-------CCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS--EECCSCSSCCCEE
T ss_pred             CccCCCCCC-------CcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC--CCCCCCCCCCCcc
Confidence            5889  888       999999999999999999999999988  99999999999999999432  8883    99999


Q ss_pred             CCcchHHHHHHhcc
Q 026210          177 SRRDSFITHRAFCD  190 (241)
Q Consensus       177 ~~~~~L~~H~~~~~  190 (241)
                      .....|.+|+++||
T Consensus        72 ~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           72 KTWTLYLKHVAECH   85 (85)
T ss_dssp             SSHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHhcC
Confidence            99999999999886

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=7.3e-16  Score=100.16  Aligned_cols=66  Identities=26%  Similarity=0.476  Sum_probs=50.5

Q ss_pred             ccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhccccC
Q 026210           58 TLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHG  137 (241)
Q Consensus        58 ~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~  137 (241)
                      .+.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|       ++.|.....|..|+++|++
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~L~~H~~~H~~   71 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHT-------------GEKPYKCDEC-------GKAFIQRSHLIGHHRVHTG   71 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTC-------------CSCSEECSSS-------CCEESSHHHHHHHGGGSCC
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHHcC-------------CCcCeeCCCC-------CCccCCHHHHHHHHHHhCC
Confidence            3445677888888888888888888887777             6677788877       7777777788888877877


Q ss_pred             Cceeec
Q 026210          138 EKKYKC  143 (241)
Q Consensus       138 ek~~~C  143 (241)
                      +++|.|
T Consensus        72 ~~p~~C   77 (77)
T 2cot_A           72 SGPSSG   77 (77)
T ss_dssp             CCCCCC
T ss_pred             CCCCCC
Confidence            777776

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.60  E-value=5.2e-16  Score=99.53  Aligned_cols=62  Identities=31%  Similarity=0.610  Sum_probs=57.2

Q ss_pred             hhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-CCCCcCCcchHHHHHHhccCc
Q 026210          131 HFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITHRAFCDAL  192 (241)
Q Consensus       131 H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~~~~L~~H~~~~~~~  192 (241)
                      +.++|+++++|.|.+|++.|.....|..|+++ +++++|.|. |++.|.....|.+|+++|++.
T Consensus         5 ~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             CCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            46788999999999999999999999999999 689999999 999999999999999998754

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=3.7e-16  Score=106.50  Aligned_cols=79  Identities=18%  Similarity=0.349  Sum_probs=71.2

Q ss_pred             ccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCC-ChhhHhhhhccccC-Cceeecccccccc
Q 026210           73 GFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALG-DLTGIKKHFSRKHG-EKKYKCERCSKKY  150 (241)
Q Consensus        73 ~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~-~~~~l~~H~~~h~~-ek~~~C~~C~k~f  150 (241)
                      .+.....+..|+++|.             ++++|.|.+|       ++.|. ....|..|+++|++ +++|.|.+|++.|
T Consensus         5 s~~~~~~~~~h~~~h~-------------~~~~~~C~~C-------~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F   64 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAIH-------------ERGEAVCPTC-------NVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQF   64 (98)
T ss_dssp             CCCCCCSCSHHHHTTT-------------TTSCCCCTTT-------CCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCC
T ss_pred             CCCCCCcHHHHHHHhc-------------cCCCcCCCCC-------CCChhhhHHHHHHHHHHHcCCCCCEECCCCCCcc
Confidence            4555667788999998             8899999999       99999 99999999999999 9999999999999


Q ss_pred             cchhhHHHHHHH-hCCcceecC
Q 026210          151 AVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       151 ~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .++..|..|+++ |+++++...
T Consensus        65 ~~~~~L~~H~~~h~~~kp~~~~   86 (98)
T 2gqj_A           65 KSKAGLNYHTMAEHSAKPSDAE   86 (98)
T ss_dssp             SCHHHHHHHHHHHSCSCSSCCC
T ss_pred             CCHHHHHHHHHHHcCCCCCCCC
Confidence            999999999999 788886554

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=1.8e-15  Score=98.56  Aligned_cols=59  Identities=22%  Similarity=0.505  Sum_probs=54.2

Q ss_pred             cccCCceeecccccccccchhhHHHHHHH-hC---CcceecC-CCCCcCCcchHHHHHHhccCc
Q 026210          134 RKHGEKKYKCERCSKKYAVQSDWKAHMKT-CG---TREYKCD-CGTIFSRRDSFITHRAFCDAL  192 (241)
Q Consensus       134 ~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~---~k~~~C~-C~k~f~~~~~L~~H~~~~~~~  192 (241)
                      .|+++++|.|.+|++.|.....|..|+++ ++   +++|.|. |++.|.....|.+|++.+|..
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~   64 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA   64 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTT
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCC
Confidence            47899999999999999999999999999 44   8999999 999999999999999887754

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=1.1e-15  Score=103.69  Aligned_cols=76  Identities=17%  Similarity=0.263  Sum_probs=69.2

Q ss_pred             cccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcC-CChhhHhhhhccccCCceeecccccccc
Q 026210           72 KGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARAL-GDLTGIKKHFSRKHGEKKYKCERCSKKY  150 (241)
Q Consensus        72 ~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f-~~~~~l~~H~~~h~~ek~~~C~~C~k~f  150 (241)
                      ..|.....|..|++.|.             .+++|.|.+|       ++.| .....|..|+++| ++++|.|.+|++.|
T Consensus        14 ~~~~~~~~~~~~~~~~~-------------~~~~~~C~~C-------~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F   72 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIV-------------DKGSVSCPTC-------QAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQL   72 (96)
T ss_dssp             CSSCTTCHHHHHHHHHH-------------HTSCEECTTT-------CSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCC
T ss_pred             CCCCCchHHHHHHHHhc-------------CCCCcCCCCC-------CCCcccCHHHHHHHHHHH-CCCCeECCCCCCee
Confidence            45677788999999887             8899999999       9999 9999999999999 99999999999999


Q ss_pred             cchhhHHHH-HHHhCCcce
Q 026210          151 AVQSDWKAH-MKTCGTREY  168 (241)
Q Consensus       151 ~~~~~L~~H-~~~~~~k~~  168 (241)
                      ..+..|..| +++|.+++|
T Consensus        73 ~~~~~L~~H~~~~H~~~p~   91 (96)
T 2ctd_A           73 RSLAGMKYHVMANHNSLPS   91 (96)
T ss_dssp             SSHHHHHHHHHHHTCCCSS
T ss_pred             CCHHHHHHHhHHhcCCCCC
Confidence            999999999 777877765

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=1.6e-15  Score=96.65  Aligned_cols=59  Identities=19%  Similarity=0.402  Sum_probs=48.9

Q ss_pred             cccCCceeecccccccccchhhHHHHHHH-hCCcceecC-CCCCcCCcchHHHHHHhccCc
Q 026210          134 RKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITHRAFCDAL  192 (241)
Q Consensus       134 ~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~~~~L~~H~~~~~~~  192 (241)
                      .|.++++|.|.+|++.|.....|..|+++ +++++|.|. |++.|.....|.+|+++|++.
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~   63 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD   63 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCC
Confidence            46778888888888888888888888888 477888888 888888888888888888754

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=2e-15  Score=98.03  Aligned_cols=62  Identities=26%  Similarity=0.577  Sum_probs=53.1

Q ss_pred             cCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHH-hCCcceec
Q 026210          102 RKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC  170 (241)
Q Consensus       102 ~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C  170 (241)
                      ++++|.|.+|       ++.|.....|..|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|
T Consensus        15 ~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           15 ERRRYKCDEC-------GKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CSCSSBCSSS-------CCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCEECCCC-------CcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            5678888888       88888888888888888888888888888888888888888888 57888887

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.57  E-value=2.1e-15  Score=91.97  Aligned_cols=55  Identities=24%  Similarity=0.513  Sum_probs=42.2

Q ss_pred             CCceeecccccccccchhhHHHHHHH-hCCcceecC-CCCCcCCcchHHHHHHhccC
Q 026210          137 GEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITHRAFCDA  191 (241)
Q Consensus       137 ~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~~~~L~~H~~~~~~  191 (241)
                      |+++|.|.+|++.|.....|..|+++ +++++|.|. |++.|.....|..|+++||+
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            46778888888888888888888888 578888888 88888888888888888763

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=1.8e-15  Score=103.46  Aligned_cols=69  Identities=19%  Similarity=0.316  Sum_probs=35.6

Q ss_pred             CCCCCccccccccccCChhHHHHHhh-hcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhh-hccccC
Q 026210           60 LATNRFVCEICNKGFQRDQNLQLHRR-GHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKH-FSRKHG  137 (241)
Q Consensus        60 ~~~~~~~C~~C~~~f~~~~~L~~H~~-~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H-~~~h~~  137 (241)
                      .++++|.|.+|++.|.....|..|++ .|.+.          .++++|.|.+|       ++.|.....|..| +++|++
T Consensus        14 ~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~----------~~ekpf~C~~C-------gk~F~~~~~L~~H~~r~Htg   76 (102)
T 2ghf_A           14 KVEGGYECKYCTFQTPDLNMFTFHVDSEHPNV----------VLNSSYVCVEC-------NFLTKRYDALSEHNLKYHPG   76 (102)
T ss_dssp             CCCSSEECSSCSCEESCHHHHHHHHHHHCSSC----------CCSCCEEETTT-------TEEESSTHHHHTHHHHTSTT
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHHhhCCCC----------CCCCCcCCCCC-------CcccCCHHHHHHHHHHhcCC
Confidence            34455555555555555555555554 24200          03445555555       5555555555555 455555


Q ss_pred             Cceeeccc
Q 026210          138 EKKYKCER  145 (241)
Q Consensus       138 ek~~~C~~  145 (241)
                      +++|.|.+
T Consensus        77 ekpy~C~~   84 (102)
T 2ghf_A           77 EENFKLTM   84 (102)
T ss_dssp             CCCEEEEE
T ss_pred             CCCeeCCc
Confidence            55555544

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.55  E-value=3.3e-15  Score=96.22  Aligned_cols=62  Identities=26%  Similarity=0.507  Sum_probs=34.4

Q ss_pred             CCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCc
Q 026210           60 LATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEK  139 (241)
Q Consensus        60 ~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek  139 (241)
                      .++++|+|..|++.|.....|..|++.|.             ++++|.|.+|       ++.|.....|..|+++|++++
T Consensus        13 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H~-------------~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k   72 (74)
T 2lce_A           13 HSDKPYKCDRCQASFRYKGNLASHKTVHT-------------GEKPYRCNIC-------GAQFNRPANLKTHTRIHSGEK   72 (74)
T ss_dssp             CCCCSBCCTTSSCCBSCHHHHHHHHHHHC-------------CCCSEECTTT-------CCEESCHHHHHHHHHHHCCSC
T ss_pred             CCCCCeECCCCCceeCCHHHHHHHHHHcC-------------CCCCEECCCC-------CchhCCHHHHHHHHHhcCCCC
Confidence            34455555555555555555555555555             4455555555       555555555555555555555


Q ss_pred             ee
Q 026210          140 KY  141 (241)
Q Consensus       140 ~~  141 (241)
                      +|
T Consensus        73 p~   74 (74)
T 2lce_A           73 PY   74 (74)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.55  E-value=3e-15  Score=98.81  Aligned_cols=59  Identities=15%  Similarity=0.429  Sum_probs=50.9

Q ss_pred             hccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-CCCCcCCcchHHHHHHhcc
Q 026210          132 FSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITHRAFCD  190 (241)
Q Consensus       132 ~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~~~~L~~H~~~~~  190 (241)
                      +..+...++|.|.+||+.|.++..|..|+++ +++++|.|. |++.|.+...|.+|++..|
T Consensus        20 ~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H   80 (85)
T 2lv2_A           20 LGLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH   80 (85)
T ss_dssp             CSSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTC
T ss_pred             CCCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccC
Confidence            4556678889999999999999999999998 688999999 9999999999999986655

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=5.6e-15  Score=100.94  Aligned_cols=66  Identities=18%  Similarity=0.235  Sum_probs=59.9

Q ss_pred             cCccccCCCCCcccCCCCCcCCChhhHhhhhc-cc---cCCceeecccccccccchhhHHHH-HHH-hCCcceecC-CCC
Q 026210          102 RKKVYVCPESTCVHHNPARALGDLTGIKKHFS-RK---HGEKKYKCERCSKKYAVQSDWKAH-MKT-CGTREYKCD-CGT  174 (241)
Q Consensus       102 ~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~-~h---~~ek~~~C~~C~k~f~~~~~L~~H-~~~-~~~k~~~C~-C~k  174 (241)
                      ++++|.|.+|       ++.|.....|..|++ .|   .++++|.|.+||+.|..+..|..| +++ .|+++|.|. +..
T Consensus        15 gekpy~C~~C-------gk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~~   87 (102)
T 2ghf_A           15 VEGGYECKYC-------TFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVKR   87 (102)
T ss_dssp             CCSSEECSSC-------SCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECCC
T ss_pred             CCcCcCCCCC-------CCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCcccC
Confidence            7899999999       999999999999997 58   568999999999999999999999 777 689999997 654

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.51  E-value=1.3e-14  Score=93.43  Aligned_cols=60  Identities=23%  Similarity=0.552  Sum_probs=33.0

Q ss_pred             cCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHH-hCCcce
Q 026210          102 RKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREY  168 (241)
Q Consensus       102 ~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~  168 (241)
                      ++++|.|..|       ++.|.....|..|+++|+++++|.|.+|++.|.....|..|+++ +++++|
T Consensus        14 ~~~~~~C~~C-------~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           14 SDKPYKCDRC-------QASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCSBCCTTS-------SCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             CCCCeECCCC-------CceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            4455555555       55555555555555555555555555555555555555555555 344443

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=1.6e-14  Score=91.95  Aligned_cols=59  Identities=20%  Similarity=0.340  Sum_probs=36.6

Q ss_pred             cCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHH-hCCcc
Q 026210          102 RKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTRE  167 (241)
Q Consensus       102 ~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~  167 (241)
                      ++++|.|.+|       ++.|.....|..|+++|+++++|.|.+|++.|.....|..|+++ |++++
T Consensus         6 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A            6 SGHPEKCSEC-------SYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             CCCSEECSSS-------SCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             CCCCeECCCC-------CcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            4556666666       66666666666666666666666666666666666666666666 55554

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.47  E-value=2.7e-14  Score=91.43  Aligned_cols=54  Identities=30%  Similarity=0.529  Sum_probs=30.6

Q ss_pred             cCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHH
Q 026210          102 RKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       102 ~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      ++++|.|.+|       ++.|.....|..|+++|+++++|.|.+|++.|.....|..|+++
T Consensus        11 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~   64 (72)
T 1x6e_A           11 GEKPYGCVEC-------GKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI   64 (72)
T ss_dssp             TCCCEECSSS-------CCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCCccCCCC-------CCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHh
Confidence            4455555555       55555555555555555555555555555555555555555555

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.45  E-value=6.1e-14  Score=85.36  Aligned_cols=52  Identities=29%  Similarity=0.581  Sum_probs=31.7

Q ss_pred             eeecccccccccchhhHHHHHHH-hCCcceecC-CCCCcCCcchHHHHHHhccC
Q 026210          140 KYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITHRAFCDA  191 (241)
Q Consensus       140 ~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~~~~L~~H~~~~~~  191 (241)
                      ||.|.+|++.|.....|..|+++ +++++|.|. |++.|.....|..|+++|++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   54 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH   54 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSS
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcc
Confidence            35566666666666666666666 455666666 66666666666666665553

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=2.1e-14  Score=93.14  Aligned_cols=65  Identities=22%  Similarity=0.375  Sum_probs=59.0

Q ss_pred             HHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhc-cccCC-ceeecccccccccchhhHH
Q 026210           80 LQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFS-RKHGE-KKYKCERCSKKYAVQSDWK  157 (241)
Q Consensus        80 L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~-~h~~e-k~~~C~~C~k~f~~~~~L~  157 (241)
                      |.+|+++|.             ++++|.|.+|       ++.|.....|..|++ .|.++ ++|.|.+|++.|.....|.
T Consensus         3 ~~~H~~~H~-------------~~k~~~C~~C-------~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~   62 (77)
T 2ct1_A            3 SGSSGRTHS-------------GEKPYECYIC-------HARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG   62 (77)
T ss_dssp             CCCCCCCCS-------------CCCSEECTTT-------CCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHH
T ss_pred             CCccccccC-------------CCCCeECCCc-------CchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHH
Confidence            456888888             8899999999       999999999999997 67765 8999999999999999999


Q ss_pred             HHHHH-hC
Q 026210          158 AHMKT-CG  164 (241)
Q Consensus       158 ~H~~~-~~  164 (241)
                      .|++. |+
T Consensus        63 ~H~~~~H~   70 (77)
T 2ct1_A           63 VHLRKQHS   70 (77)
T ss_dssp             HHHHHTSC
T ss_pred             HHHHHhCC
Confidence            99998 64

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.45  E-value=1.3e-14  Score=103.79  Aligned_cols=81  Identities=16%  Similarity=0.283  Sum_probs=70.8

Q ss_pred             CCCccccccccccC------ChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhccc
Q 026210           62 TNRFVCEICNKGFQ------RDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRK  135 (241)
Q Consensus        62 ~~~~~C~~C~~~f~------~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h  135 (241)
                      ++.+.|++|++.|.      ....|..|+ .|+             ++++|.|.+|       ++.|.....|..|+++|
T Consensus        39 ~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~-------------~~~~~~C~~C-------~k~f~~~~~l~~H~~~H   97 (129)
T 2wbt_A           39 QKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASK-------------AISQFVCPLC-------LMPFSSSVSLKQHIRYT   97 (129)
T ss_dssp             HHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHH-------------HHCSEECTTT-------CCEESSHHHHHHHHHHT
T ss_pred             hCcccchhhhcccCCCcccCCHHHHHHHH-HhC-------------CCCCeECCCC-------CcccCCHhHHHHHHHHC
Confidence            46788999888776      556677776 566             7899999999       99999999999999999


Q ss_pred             cCCceeecccccccccchhhHHHHHHH-hCC
Q 026210          136 HGEKKYKCERCSKKYAVQSDWKAHMKT-CGT  165 (241)
Q Consensus       136 ~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~  165 (241)
                        +++|.|.+|++.|.....|..|+++ |+.
T Consensus        98 --~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           98 --EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             --CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             --CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence              8999999999999999999999999 554

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.44  E-value=9.7e-14  Score=91.52  Aligned_cols=43  Identities=12%  Similarity=0.403  Sum_probs=20.6

Q ss_pred             CCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHH
Q 026210          119 ARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMK  161 (241)
Q Consensus       119 ~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~  161 (241)
                      ++.|.....|..|+++|+++++|.|.+|++.|.++..|..|++
T Consensus        35 gk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~   77 (85)
T 2lv2_A           35 GESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHIN   77 (85)
T ss_dssp             CCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHH
T ss_pred             CCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCc
Confidence            4444444444444444444444444444444444444444443

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.43  E-value=8.5e-14  Score=84.69  Aligned_cols=54  Identities=22%  Similarity=0.391  Sum_probs=49.6

Q ss_pred             CccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHHh
Q 026210          103 KKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTC  163 (241)
Q Consensus       103 ~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~~  163 (241)
                      +++|.|.+|       ++.|.....|..|+++|+++++|.|.+|++.|.....|..|+++|
T Consensus         2 ~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   55 (57)
T 3uk3_C            2 SSSRECSYC-------GKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH   55 (57)
T ss_dssp             ---CBCTTT-------CCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCCccCCCC-------cchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHh
Confidence            578999999       999999999999999999999999999999999999999999983

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=1.3e-13  Score=88.42  Aligned_cols=58  Identities=22%  Similarity=0.544  Sum_probs=53.1

Q ss_pred             hccccCCceeecc--cccccccchhhHHHHHHH-hCCcceecC-CCCCcCCcchHHHHHHhc
Q 026210          132 FSRKHGEKKYKCE--RCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITHRAFC  189 (241)
Q Consensus       132 ~~~h~~ek~~~C~--~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~~~~L~~H~~~~  189 (241)
                      ..+|.++++|.|.  .|++.|.....|..|+++ +++++|.|. |++.|.....|.+|+++|
T Consensus        11 ~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           11 NYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             SCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             hccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            3457889999997  599999999999999999 689999999 999999999999999887

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=1.3e-13  Score=84.84  Aligned_cols=48  Identities=33%  Similarity=0.824  Sum_probs=30.9

Q ss_pred             ceeecccccccccchhhHHHHHHH-hCCcceecC-CCCCcCCcchHHHHH
Q 026210          139 KKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITHR  186 (241)
Q Consensus       139 k~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~~~~L~~H~  186 (241)
                      ++|.|.+|++.|.....|..|+++ +++++|.|. |++.|.+...|..|+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   50 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA   50 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHH
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHH
Confidence            356666666666666666666666 456666666 666666666666665

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.39  E-value=2e-13  Score=85.67  Aligned_cols=56  Identities=21%  Similarity=0.494  Sum_probs=52.9

Q ss_pred             cCccccCCCCCcccCCCCCcCCChhhHhhhhcc-c-cCCceeecccccccccchhhHHHHHHH-hC
Q 026210          102 RKKVYVCPESTCVHHNPARALGDLTGIKKHFSR-K-HGEKKYKCERCSKKYAVQSDWKAHMKT-CG  164 (241)
Q Consensus       102 ~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~-h-~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~  164 (241)
                      ++++|.|..|       ++.|.....|..|++. | .++++|.|.+|++.|.+...|..|++. |+
T Consensus         7 ~~k~~~C~~C-------~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            7 GEHTYRCKVC-------SRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             ETTEEECTTT-------CCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             CCcceECCCC-------cchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            8899999999       9999999999999998 7 589999999999999999999999998 54

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.39  E-value=3.1e-13  Score=82.12  Aligned_cols=55  Identities=22%  Similarity=0.521  Sum_probs=51.6

Q ss_pred             cccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHH-hCCc
Q 026210          105 VYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTR  166 (241)
Q Consensus       105 ~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k  166 (241)
                      +|.|.+|       ++.|.....|..|+++|+++++|.|.+|++.|.....|..|+++ ++++
T Consensus         1 p~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEEC-------GIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTT-------CCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCC-------cCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            5899999       99999999999999999999999999999999999999999998 5554

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=3.6e-13  Score=87.41  Aligned_cols=54  Identities=15%  Similarity=0.285  Sum_probs=32.8

Q ss_pred             cCccccCCCCCcccCCCCCcCCChhhHhhhhccccC---CceeecccccccccchhhHHHHHHH
Q 026210          102 RKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHG---EKKYKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       102 ~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~---ek~~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      ++++|.|.+|       ++.|.....|..|+++|++   +++|.|.+|++.|.....|..|++.
T Consensus         4 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~   60 (78)
T 2d9h_A            4 GSSGLQCEIC-------GFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK   60 (78)
T ss_dssp             SCCCEECSSS-------CCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCcCeECCCC-------CCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHH
Confidence            4555566655       5556555566666555554   5666666666666666666666654

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=2.7e-15  Score=96.18  Aligned_cols=69  Identities=12%  Similarity=0.189  Sum_probs=53.5

Q ss_pred             hhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhH
Q 026210           77 DQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDW  156 (241)
Q Consensus        77 ~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L  156 (241)
                      ...|..|+++|.             ++++|.|.+|       ++.|.....|..       +++|.|.+|++.|.....|
T Consensus         3 ~~~l~~H~~~h~-------------~~~~~~C~~C-------~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l   55 (73)
T 2ctu_A            3 SGSSGKRQKIHL-------------GDRSQKCSKC-------GIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAAL   55 (73)
T ss_dssp             CCSCCCCCCCCC-------------CCSEEECSSS-------CCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSS
T ss_pred             chhHHHHHHHhC-------------CCCCeeCCcc-------cchhCCHHHhCc-------CCCCCCCCCChhhcCHHHH
Confidence            345667777777             7788888888       788877776665       6778888888888888888


Q ss_pred             HHHHHH-hCCcceecC-C
Q 026210          157 KAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       157 ~~H~~~-~~~k~~~C~-C  172 (241)
                      ..|+++ +++++|.|+ |
T Consensus        56 ~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           56 NKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCCSSCCCCCCCSSCCCC
T ss_pred             HHHHHhhcCCCCCCCCCC
Confidence            888887 577888887 6

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=8.4e-13  Score=82.86  Aligned_cols=54  Identities=20%  Similarity=0.433  Sum_probs=33.6

Q ss_pred             cCCceeecccccccccchhhHHHHHHHhCCcceecC--CCCCcCCcchHHHHHHhcc
Q 026210          136 HGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCD--CGTIFSRRDSFITHRAFCD  190 (241)
Q Consensus       136 ~~ek~~~C~~C~k~f~~~~~L~~H~~~~~~k~~~C~--C~k~f~~~~~L~~H~~~~~  190 (241)
                      .++++|.|..|++.|. ...|..|++++++++|.|.  |++.|...+.|..|+++|-
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc   61 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDSC   61 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHHCSSSEEECTTCCSCCEEETTTHHHHHHTTS
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHHcCCcCccCCcccCcccccHHHHHHHHHhhc
Confidence            3455666666666666 6666666655556666664  6666666666666666554

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=2.4e-12  Score=86.65  Aligned_cols=62  Identities=18%  Similarity=0.225  Sum_probs=43.5

Q ss_pred             CCccccccccccCChhHHHHHhhh-cCCCchhhhcchhhhcCcc--------ccCCCCCcccCCCCCcCCChhhHhhhhc
Q 026210           63 NRFVCEICNKGFQRDQNLQLHRRG-HNLPWKLKQRNSKEVRKKV--------YVCPESTCVHHNPARALGDLTGIKKHFS  133 (241)
Q Consensus        63 ~~~~C~~C~~~f~~~~~L~~H~~~-h~~~~~~~~~~~~~~~~~~--------~~C~~C~c~~~~~~~~f~~~~~l~~H~~  133 (241)
                      ..|.|..|++.|.....|..|++. |.             ++++        |.|.+|       ++.|.....|..|++
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~-------------~~~~~~~~~c~~~~C~~C-------~k~f~~~~~L~~H~~   83 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHV-------------GGPEQNNHVCYWEECPRE-------GKSFKAKYKLVNHIR   83 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTT-------------CCTTCSCCCCCCTTCSST-------TCCCSSHHHHHHHHH
T ss_pred             CCCcccccccccCCHHHHHHHHHHhcc-------------CCCCCCccceeccCCCCC-------CcccCCHHHHHHHHH
Confidence            356788999999999999999887 65             4444        566666       666666666666666


Q ss_pred             cccCCceeecc
Q 026210          134 RKHGEKKYKCE  144 (241)
Q Consensus       134 ~h~~ek~~~C~  144 (241)
                      +|+++++|.|.
T Consensus        84 ~H~~~k~~~C~   94 (95)
T 2ej4_A           84 VHTGEKSGPSS   94 (95)
T ss_dssp             HHHTCCCCSSC
T ss_pred             hcCCCCCCCCC
Confidence            66666666654

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.33  E-value=1e-12  Score=80.69  Aligned_cols=54  Identities=22%  Similarity=0.539  Sum_probs=50.5

Q ss_pred             ccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHH-hC
Q 026210          104 KVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CG  164 (241)
Q Consensus       104 ~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~  164 (241)
                      ++|.|.+|       ++.|.....|..|+++|+++++|.|.+|++.|.....|..|++. |.
T Consensus         1 k~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~   55 (60)
T 2adr_A            1 RSFVCEVC-------TRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS   55 (60)
T ss_dssp             CCBCCTTT-------CCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcCcCCCC-------ccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcC
Confidence            47999999       99999999999999999999999999999999999999999854 64

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=2.8e-14  Score=91.32  Aligned_cols=70  Identities=17%  Similarity=0.212  Sum_probs=63.8

Q ss_pred             cccccCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHh
Q 026210           50 EVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIK  129 (241)
Q Consensus        50 ~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~  129 (241)
                      ..+..|+++|.++++|.|.+|++.|.....|..                    +++|.|.+|       ++.|.....|.
T Consensus         4 ~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~--------------------~~~~~C~~C-------~~~f~~~~~l~   56 (73)
T 2ctu_A            4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR--------------------RKTPMCEKC-------RKDSCQEAALN   56 (73)
T ss_dssp             CSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC--------------------SSSCCCHHH-------HHTCSCCCSSC
T ss_pred             hhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc--------------------CCCCCCCCC-------ChhhcCHHHHH
Confidence            457788999999999999999999999887764                    368999999       99999999999


Q ss_pred             hhhccccCCceeecccc
Q 026210          130 KHFSRKHGEKKYKCERC  146 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C  146 (241)
                      .|+++|+++++|.|.+|
T Consensus        57 ~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           57 KDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCSSCCCCCCCSSCCCC
T ss_pred             HHHHhhcCCCCCCCCCC
Confidence            99999999999999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=7.4e-13  Score=76.82  Aligned_cols=43  Identities=23%  Similarity=0.411  Sum_probs=40.9

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+||+.|.....|..|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            689999999999999999999999999999999 699999998 7

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.1e-12  Score=76.03  Aligned_cols=43  Identities=26%  Similarity=0.392  Sum_probs=40.8

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 699999998 7

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.31  E-value=1e-12  Score=76.23  Aligned_cols=43  Identities=23%  Similarity=0.441  Sum_probs=40.6

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      +|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 689999998 7

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=1.2e-12  Score=75.17  Aligned_cols=42  Identities=24%  Similarity=0.353  Sum_probs=39.5

Q ss_pred             hhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          131 HFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       131 H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      |+++|+++++|.|.+|++.|.....|..|+++ +++++|.|. |
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            68899999999999999999999999999999 689999998 7

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1e-12  Score=76.16  Aligned_cols=43  Identities=23%  Similarity=0.374  Sum_probs=40.5

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.+...|..|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 689999998 7

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.2e-12  Score=75.94  Aligned_cols=43  Identities=23%  Similarity=0.439  Sum_probs=40.7

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      +|+++|+++++|.|.+|++.|.+...|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 689999998 7

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.30  E-value=1e-12  Score=76.15  Aligned_cols=43  Identities=30%  Similarity=0.497  Sum_probs=40.5

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 699999998 7

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1e-12  Score=76.23  Aligned_cols=43  Identities=23%  Similarity=0.434  Sum_probs=40.5

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            588999999999999999999999999999999 689999998 7

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.2e-12  Score=75.91  Aligned_cols=43  Identities=26%  Similarity=0.397  Sum_probs=40.7

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 699999998 7

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.2e-12  Score=75.94  Aligned_cols=43  Identities=21%  Similarity=0.356  Sum_probs=40.7

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999999 689999998 7

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.2e-12  Score=75.94  Aligned_cols=43  Identities=26%  Similarity=0.408  Sum_probs=40.5

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            589999999999999999999999999999999 689999998 6

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.4e-12  Score=75.58  Aligned_cols=43  Identities=33%  Similarity=0.502  Sum_probs=40.5

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      +|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 689999998 7

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.4e-12  Score=75.66  Aligned_cols=43  Identities=28%  Similarity=0.464  Sum_probs=40.6

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.+...|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            588999999999999999999999999999999 689999998 7

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.4e-12  Score=75.60  Aligned_cols=43  Identities=23%  Similarity=0.360  Sum_probs=40.5

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 689999998 7

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=2.2e-12  Score=86.85  Aligned_cols=62  Identities=13%  Similarity=0.250  Sum_probs=53.7

Q ss_pred             CccccCCCCCcccCCCCCcCCChhhHhhhhcc-ccCCce--------eecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          103 KKVYVCPESTCVHHNPARALGDLTGIKKHFSR-KHGEKK--------YKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       103 ~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~-h~~ek~--------~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      ...|.|..|       ++.|.....|..|+++ |.++++        |.|.+|++.|.....|..|+++ +++++|.|+
T Consensus        23 ~~~~~C~~C-------~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           23 QLSRPKKSC-------DRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             CSSSSCCCC-------CCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             cCCCccccc-------ccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            345678888       8999999999999987 888877        8999999999999999999998 688999884

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.5e-12  Score=75.42  Aligned_cols=43  Identities=28%  Similarity=0.456  Sum_probs=40.6

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.+...|..|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 689999998 7

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.1e-12  Score=76.07  Aligned_cols=43  Identities=28%  Similarity=0.448  Sum_probs=40.7

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 699999998 7

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.29  E-value=1.4e-12  Score=75.59  Aligned_cols=43  Identities=28%  Similarity=0.431  Sum_probs=40.4

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.+...|..|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            488999999999999999999999999999999 689999998 7

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.2e-12  Score=75.91  Aligned_cols=43  Identities=28%  Similarity=0.460  Sum_probs=40.5

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 689999998 7

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.1e-12  Score=76.11  Aligned_cols=43  Identities=26%  Similarity=0.404  Sum_probs=39.7

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            588899999999999999999999999999999 689999998 7

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.2e-12  Score=75.97  Aligned_cols=43  Identities=23%  Similarity=0.404  Sum_probs=40.1

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.+...|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            488999999999999999999999999999999 689999998 7

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.29  E-value=1.1e-12  Score=76.02  Aligned_cols=43  Identities=23%  Similarity=0.452  Sum_probs=40.3

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999999 689999998 7

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.5e-12  Score=75.44  Aligned_cols=43  Identities=26%  Similarity=0.367  Sum_probs=40.6

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999999 689999998 7

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.6e-12  Score=75.32  Aligned_cols=43  Identities=30%  Similarity=0.467  Sum_probs=40.7

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 689999998 7

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.28  E-value=1.1e-12  Score=76.06  Aligned_cols=43  Identities=23%  Similarity=0.390  Sum_probs=39.8

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            588999999999999999999999999999999 589999998 7

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.2e-12  Score=75.81  Aligned_cols=43  Identities=23%  Similarity=0.368  Sum_probs=40.0

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 689999998 7

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.5e-12  Score=75.42  Aligned_cols=43  Identities=26%  Similarity=0.441  Sum_probs=40.4

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999999 689999998 7

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.3e-12  Score=75.76  Aligned_cols=43  Identities=28%  Similarity=0.423  Sum_probs=40.3

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 689999998 7

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.4e-12  Score=75.55  Aligned_cols=43  Identities=23%  Similarity=0.447  Sum_probs=40.4

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 589999998 7

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.4e-12  Score=75.67  Aligned_cols=43  Identities=28%  Similarity=0.403  Sum_probs=40.1

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 589999998 7

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.28  E-value=6.5e-13  Score=82.35  Aligned_cols=53  Identities=19%  Similarity=0.360  Sum_probs=46.5

Q ss_pred             HhhhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-CCCCcCCcchHH
Q 026210          128 IKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFI  183 (241)
Q Consensus       128 l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~~~~L~  183 (241)
                      |..|+++|+++++|.|.+||+.|.....|.   ++ .++++|.|. |++.|....++.
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCS
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCcccc
Confidence            567999999999999999999999998886   55 589999999 999998876654

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=1.2e-12  Score=75.91  Aligned_cols=43  Identities=16%  Similarity=0.337  Sum_probs=40.4

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999999 689999998 7

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=2.1e-12  Score=74.85  Aligned_cols=43  Identities=30%  Similarity=0.449  Sum_probs=40.3

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.+...|..|+++ +++++|.|+ |
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            478899999999999999999999999999999 699999998 7

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=1.4e-12  Score=75.54  Aligned_cols=43  Identities=23%  Similarity=0.376  Sum_probs=40.3

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999999 689999998 7

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.4e-12  Score=75.63  Aligned_cols=43  Identities=28%  Similarity=0.466  Sum_probs=40.0

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 689999998 7

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.6e-12  Score=75.36  Aligned_cols=43  Identities=21%  Similarity=0.363  Sum_probs=39.8

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.+...|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            488899999999999999999999999999999 689999998 7

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.4e-12  Score=75.66  Aligned_cols=43  Identities=28%  Similarity=0.521  Sum_probs=40.5

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999 589999998 7

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.27  E-value=1.7e-12  Score=75.22  Aligned_cols=43  Identities=26%  Similarity=0.400  Sum_probs=40.1

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999999 689999998 7

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.9e-12  Score=75.08  Aligned_cols=43  Identities=28%  Similarity=0.409  Sum_probs=39.6

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.+...|..|+++ +++++|.|. |
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            478899999999999999999999999999999 689999998 7

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=2.5e-12  Score=74.52  Aligned_cols=43  Identities=16%  Similarity=0.187  Sum_probs=40.4

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999999 689999998 7

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=1.8e-12  Score=75.18  Aligned_cols=43  Identities=30%  Similarity=0.471  Sum_probs=39.9

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.+...|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            488899999999999999999999999999999 689999998 7

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.7e-12  Score=75.23  Aligned_cols=43  Identities=30%  Similarity=0.468  Sum_probs=39.6

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.+...|..|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            478899999999999999999999999999999 688999998 7

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=2.5e-12  Score=74.48  Aligned_cols=43  Identities=28%  Similarity=0.475  Sum_probs=40.3

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            478899999999999999999999999999999 689999998 7

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=3.3e-12  Score=74.01  Aligned_cols=43  Identities=30%  Similarity=0.437  Sum_probs=40.4

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            478899999999999999999999999999999 699999998 7

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.26  E-value=2.4e-12  Score=74.62  Aligned_cols=43  Identities=19%  Similarity=0.298  Sum_probs=39.8

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|. |
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            478899999999999999999999999999999 589999998 7

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.9e-12  Score=75.00  Aligned_cols=43  Identities=35%  Similarity=0.529  Sum_probs=40.3

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.+...|..|+++ +++++|.|. |
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            488999999999999999999999999999999 689999998 7

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.1e-12  Score=74.80  Aligned_cols=42  Identities=29%  Similarity=0.483  Sum_probs=39.5

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      +|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTT
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            588999999999999999999999999999999 689999997

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.25  E-value=4e-12  Score=81.07  Aligned_cols=57  Identities=30%  Similarity=0.584  Sum_probs=45.2

Q ss_pred             ccccCCceeeccc--ccccccchhhHHHHHHH-hCCcceec--C-CCCCcCCcchHHHHHHhc
Q 026210          133 SRKHGEKKYKCER--CSKKYAVQSDWKAHMKT-CGTREYKC--D-CGTIFSRRDSFITHRAFC  189 (241)
Q Consensus       133 ~~h~~ek~~~C~~--C~k~f~~~~~L~~H~~~-~~~k~~~C--~-C~k~f~~~~~L~~H~~~~  189 (241)
                      ..+..+++|.|..  |++.|.....|..|+++ +++++|.|  . |++.|.....|.+|+++|
T Consensus        10 ~~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           10 IDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CCccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            3455677888877  88888888888888888 57788888  5 888888888888887765

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.3e-12  Score=75.72  Aligned_cols=43  Identities=26%  Similarity=0.444  Sum_probs=39.4

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999998 588999998 7

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.24  E-value=5.7e-12  Score=75.71  Aligned_cols=45  Identities=24%  Similarity=0.410  Sum_probs=38.1

Q ss_pred             cccCCceeecccccccccchhhHHHHHH-H-hCCcceecC-CCCCcCC
Q 026210          134 RKHGEKKYKCERCSKKYAVQSDWKAHMK-T-CGTREYKCD-CGTIFSR  178 (241)
Q Consensus       134 ~h~~ek~~~C~~C~k~f~~~~~L~~H~~-~-~~~k~~~C~-C~k~f~~  178 (241)
                      .|.++++|.|.+|++.|.....|..|++ + .++++|.|. |++.|..
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            5677888999999999999999999987 5 478889998 9998865

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=3.2e-12  Score=74.34  Aligned_cols=43  Identities=21%  Similarity=0.366  Sum_probs=39.8

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHH-H-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMK-T-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~-~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|++ + .++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            48899999999999999999999999999999 7 588999998 7

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=4.9e-12  Score=73.28  Aligned_cols=43  Identities=23%  Similarity=0.451  Sum_probs=40.1

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            488999999999999999999999999999999 689999997 5

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.21  E-value=7.6e-12  Score=79.94  Aligned_cols=44  Identities=18%  Similarity=0.553  Sum_probs=23.8

Q ss_pred             CCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHH
Q 026210          119 ARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       119 ~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      ++.|.....|..|+++|+++++|.|.+|++.|.....|..|+++
T Consensus        28 ~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G           28 DRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT   71 (73)
T ss_dssp             CCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTT
T ss_pred             CCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHh
Confidence            55555555555555555555555555555555555555555543

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=7.6e-12  Score=70.87  Aligned_cols=41  Identities=22%  Similarity=0.363  Sum_probs=37.9

Q ss_pred             hhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          131 HFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       131 H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      |+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            67889999999999999999999999999999 689999984

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.21  E-value=6.6e-12  Score=71.15  Aligned_cols=41  Identities=24%  Similarity=0.493  Sum_probs=38.0

Q ss_pred             hhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          131 HFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       131 H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      |+++|+++++|.|.+|++.|.+...|..|+++ +++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            67889999999999999999999999999999 689999984

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=6.3e-12  Score=78.78  Aligned_cols=53  Identities=17%  Similarity=0.333  Sum_probs=38.2

Q ss_pred             cCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecc-cccccccchhhHHHHHHHh
Q 026210          102 RKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCE-RCSKKYAVQSDWKAHMKTC  163 (241)
Q Consensus       102 ~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~-~C~k~f~~~~~L~~H~~~~  163 (241)
                      ++++|.|.+|       ++.|. ...|..|+++ +++++|.|. +||+.|..+..|..|+++|
T Consensus         7 ~~~~~~C~~C-------~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~h   60 (66)
T 2eod_A            7 GKRTQPCTYC-------TKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDS   60 (66)
T ss_dssp             CCCEEECSSS-------CCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTT
T ss_pred             CCCCeecccc-------CCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhh
Confidence            4566777777       77777 7777777776 777777777 7777777777777777764

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=7.7e-12  Score=72.42  Aligned_cols=42  Identities=21%  Similarity=0.406  Sum_probs=39.5

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      +|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999999999999999999 689999985

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.19  E-value=8.7e-12  Score=72.18  Aligned_cols=42  Identities=24%  Similarity=0.503  Sum_probs=39.4

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999999999999999999 689999985

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=8.8e-12  Score=72.15  Aligned_cols=42  Identities=31%  Similarity=0.519  Sum_probs=39.6

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            589999999999999999999999999999999 689999996

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=8.4e-12  Score=72.23  Aligned_cols=42  Identities=31%  Similarity=0.505  Sum_probs=39.5

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999999999999999999 689999985

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=9.3e-12  Score=72.00  Aligned_cols=42  Identities=31%  Similarity=0.507  Sum_probs=39.4

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            588999999999999999999999999999999 689999985

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=9.9e-12  Score=71.13  Aligned_cols=42  Identities=29%  Similarity=0.521  Sum_probs=39.3

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999999999999999999 689999984

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=3.9e-12  Score=81.91  Aligned_cols=65  Identities=23%  Similarity=0.438  Sum_probs=57.9

Q ss_pred             hhHhhhhccccCCceeecccccccccchhhHHHHHHHhCCcceecC-CCCCcCCcchHHHHHHhccCc
Q 026210          126 TGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCD-CGTIFSRRDSFITHRAFCDAL  192 (241)
Q Consensus       126 ~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~~~~k~~~C~-C~k~f~~~~~L~~H~~~~~~~  192 (241)
                      ..|..|+++|.++++|.|..|++.|. ...|..|+...++++|.|. |++.|.. ..|..|+++|.+.
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~~~c~~~~~~C~~C~~~~~~-~~l~~H~~~c~~~   68 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHEDYCGARTELCGNCGRNVLV-KDLKTHPEVCGRE   68 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHHHHHHHCEEECSSSCCEEET-TGGGTHHHHBTTB
T ss_pred             hHHHhhCcccCCCcccCCcccChHhh-HHHHHHHHhHcCCCceEcccCCCcCcH-HHHHHHHHHccCC
Confidence            35788999999999999999999995 8999999943799999999 9999874 8999999998765

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=1e-11  Score=71.87  Aligned_cols=42  Identities=21%  Similarity=0.448  Sum_probs=39.4

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            588999999999999999999999999999999 689999985

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.18  E-value=7.9e-12  Score=75.06  Aligned_cols=51  Identities=18%  Similarity=0.222  Sum_probs=47.2

Q ss_pred             CCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHH-hCCccee
Q 026210          119 ARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYK  169 (241)
Q Consensus       119 ~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~  169 (241)
                      ++.|.....|..|+++|+++++|.|.+||+.|.....|..|+++ +++++|.
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            67888899999999999999999999999999999999999999 6888874

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=8.4e-12  Score=72.24  Aligned_cols=42  Identities=26%  Similarity=0.477  Sum_probs=39.3

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.+...|..|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999999999999999999 689999985

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=2.4e-11  Score=70.24  Aligned_cols=45  Identities=24%  Similarity=0.295  Sum_probs=42.2

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|+++|.++++|.|.+|++.|....+|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHS-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCC-------------SSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            57788999999999999999999999999999998             8899999887

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=1.1e-11  Score=70.96  Aligned_cols=42  Identities=19%  Similarity=0.375  Sum_probs=39.2

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      +|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            588999999999999999999999999999999 689999984

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=2.6e-11  Score=70.08  Aligned_cols=45  Identities=22%  Similarity=0.294  Sum_probs=42.1

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTS-------------CCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcC-------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998             8899999987

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=9.1e-12  Score=72.08  Aligned_cols=42  Identities=29%  Similarity=0.438  Sum_probs=38.9

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            588999999999999999999999999999999 689999985

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.1e-11  Score=71.76  Aligned_cols=42  Identities=24%  Similarity=0.460  Sum_probs=39.2

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            588999999999999999999999999999999 589999985

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=8.2e-12  Score=71.51  Aligned_cols=42  Identities=26%  Similarity=0.449  Sum_probs=39.2

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            588999999999999999999999999999999 689999984

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=8.4e-12  Score=71.44  Aligned_cols=42  Identities=26%  Similarity=0.396  Sum_probs=39.0

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            588999999999999999999999999999999 589999984

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=9.9e-12  Score=71.89  Aligned_cols=42  Identities=26%  Similarity=0.463  Sum_probs=38.9

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999999999999999999 589999985

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.4e-11  Score=71.33  Aligned_cols=42  Identities=24%  Similarity=0.445  Sum_probs=39.2

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            588999999999999999999999999999999 689999985

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.4e-11  Score=71.28  Aligned_cols=42  Identities=29%  Similarity=0.506  Sum_probs=39.5

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            588999999999999999999999999999999 699999985

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=2.2e-11  Score=70.41  Aligned_cols=45  Identities=24%  Similarity=0.379  Sum_probs=42.1

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTS-------------CSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            47788999999999999999999999999999998             8899999887

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.17  E-value=1.6e-11  Score=69.49  Aligned_cols=40  Identities=18%  Similarity=0.408  Sum_probs=37.8

Q ss_pred             hhccccCCceeecccccccccchhhHHHHHHH-hCCcceec
Q 026210          131 HFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC  170 (241)
Q Consensus       131 H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C  170 (241)
                      |+++|+++++|.|.+|++.|.....|..|+++ +++++|.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            78899999999999999999999999999999 68999988

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.1e-11  Score=71.69  Aligned_cols=42  Identities=26%  Similarity=0.491  Sum_probs=39.1

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.+...|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999999999999999999 689999985

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.1e-11  Score=70.14  Aligned_cols=40  Identities=28%  Similarity=0.535  Sum_probs=37.9

Q ss_pred             hhccccCCceeecccccccccchhhHHHHHHH-hCCcceec
Q 026210          131 HFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC  170 (241)
Q Consensus       131 H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C  170 (241)
                      |+++|+++++|.|.+|++.|.....|..|+++ +++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            78899999999999999999999999999999 69999988

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=9.3e-12  Score=72.03  Aligned_cols=42  Identities=24%  Similarity=0.449  Sum_probs=38.6

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            588999999999999999999999999999999 588999985

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.1e-11  Score=71.74  Aligned_cols=42  Identities=24%  Similarity=0.411  Sum_probs=38.7

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999999999999999999 689999985

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.5e-11  Score=71.22  Aligned_cols=42  Identities=24%  Similarity=0.451  Sum_probs=39.0

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.+...|..|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            488899999999999999999999999999999 689999985

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=9.8e-12  Score=71.94  Aligned_cols=42  Identities=29%  Similarity=0.494  Sum_probs=38.9

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999999999999999999 588999985

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=2.5e-11  Score=70.16  Aligned_cols=45  Identities=22%  Similarity=0.299  Sum_probs=42.1

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTC-------------CCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcC-------------CCCCCCCCCC
Confidence            47788999999999999999999999999999998             8899999987

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.1e-11  Score=71.71  Aligned_cols=42  Identities=26%  Similarity=0.532  Sum_probs=38.9

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            588999999999999999999999999999999 589999985

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.1e-11  Score=71.64  Aligned_cols=42  Identities=26%  Similarity=0.510  Sum_probs=39.2

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            588999999999999999999999999999999 689999985

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.16  E-value=3.1e-11  Score=69.79  Aligned_cols=45  Identities=20%  Similarity=0.316  Sum_probs=42.1

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHV-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGS-------------SSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCcCCCCC
Confidence            47788999999999999999999999999999998             8899999887

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=3.2e-11  Score=69.72  Aligned_cols=45  Identities=27%  Similarity=0.298  Sum_probs=42.0

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTT-------------TCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998             8899999887

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.1e-11  Score=71.67  Aligned_cols=42  Identities=26%  Similarity=0.455  Sum_probs=39.0

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            588999999999999999999999999999999 589999985

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.1e-11  Score=71.69  Aligned_cols=42  Identities=29%  Similarity=0.506  Sum_probs=38.7

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            588999999999999999999999999999998 689999985

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=3.2e-11  Score=69.67  Aligned_cols=45  Identities=20%  Similarity=0.257  Sum_probs=42.0

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHT-------------GENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTT-------------TSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            57788999999999999999999999999999998             8899999887

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=3.4e-11  Score=69.64  Aligned_cols=45  Identities=22%  Similarity=0.309  Sum_probs=42.0

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHS-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTC-------------CSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998             8899999887

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.16  E-value=2.8e-11  Score=69.96  Aligned_cols=45  Identities=22%  Similarity=0.324  Sum_probs=42.1

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHS-------------SCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            57788999999999999999999999999999998             8899999887

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=2.9e-11  Score=69.90  Aligned_cols=45  Identities=27%  Similarity=0.418  Sum_probs=42.1

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHS-------------GKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGS-------------SCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhc-------------CCCCCCCCCC
Confidence            47788999999999999999999999999999998             8899999887

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.16  E-value=3e-11  Score=69.79  Aligned_cols=45  Identities=22%  Similarity=0.302  Sum_probs=42.1

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHT-------------GVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSS-------------SCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            57788999999999999999999999999999998             8899999887

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.2e-11  Score=69.67  Aligned_cols=45  Identities=22%  Similarity=0.284  Sum_probs=42.0

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHT-------------GVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGS-------------CCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998             8899999987

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.1e-11  Score=69.71  Aligned_cols=45  Identities=22%  Similarity=0.321  Sum_probs=42.0

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTT-------------TCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998             8899999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.6e-11  Score=70.05  Aligned_cols=45  Identities=22%  Similarity=0.259  Sum_probs=42.2

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHS-------------CCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            57788999999999999999999999999999998             8899999987

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1e-11  Score=71.85  Aligned_cols=42  Identities=29%  Similarity=0.448  Sum_probs=38.5

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            588899999999999999999999999999999 588999985

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=3.4e-11  Score=69.62  Aligned_cols=45  Identities=24%  Similarity=0.312  Sum_probs=42.0

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGT-------------TCCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998             8899999887

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=7.4e-12  Score=70.93  Aligned_cols=41  Identities=22%  Similarity=0.541  Sum_probs=37.2

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceec
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC  170 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C  170 (241)
                      +|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            478899999999999999999999999999998 58899987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.5e-11  Score=69.56  Aligned_cols=45  Identities=29%  Similarity=0.437  Sum_probs=41.9

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHM-------------GEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGG-------------SCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998             8899999987

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.15  E-value=3.2e-11  Score=69.76  Aligned_cols=45  Identities=27%  Similarity=0.389  Sum_probs=42.1

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHS-------------CCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998             8899999987

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.4e-11  Score=71.35  Aligned_cols=42  Identities=21%  Similarity=0.449  Sum_probs=39.3

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999999999999999999 689999986

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.5e-11  Score=71.10  Aligned_cols=42  Identities=29%  Similarity=0.462  Sum_probs=37.2

Q ss_pred             hhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          131 HFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       131 H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      ++++|+++++|.|.+|++.|.....|..|+++ +++++|.|. |
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            46788899999999999999999999999988 588999998 7

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=3.2e-11  Score=69.68  Aligned_cols=45  Identities=22%  Similarity=0.291  Sum_probs=41.9

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTC-------------CCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998             8899999887

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=3.3e-11  Score=69.70  Aligned_cols=45  Identities=24%  Similarity=0.334  Sum_probs=42.0

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTS-------------CSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            47788999999999999999999999999999998             8899999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=3.9e-11  Score=69.36  Aligned_cols=45  Identities=24%  Similarity=0.313  Sum_probs=41.9

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHT-------------AEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTT-------------CCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998             8899999887

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.4e-11  Score=71.27  Aligned_cols=42  Identities=19%  Similarity=0.352  Sum_probs=39.5

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999999999999999999 689999985

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=3.8e-11  Score=69.35  Aligned_cols=45  Identities=18%  Similarity=0.331  Sum_probs=42.0

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHT-------------GERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHS-------------CCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            47788999999999999999999999999999998             8899999887

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.14  E-value=3.8e-11  Score=69.43  Aligned_cols=45  Identities=27%  Similarity=0.386  Sum_probs=41.9

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .+.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHT-------------REKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGC-------------CSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998             8899999887

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1e-11  Score=71.17  Aligned_cols=42  Identities=19%  Similarity=0.284  Sum_probs=39.3

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999999999999999999 689999984

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=2.8e-11  Score=69.24  Aligned_cols=44  Identities=20%  Similarity=0.351  Sum_probs=40.8

Q ss_pred             CccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           55 SPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        55 ~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      |.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHA-------------EEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHT-------------SSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            4678899999999999999999999999999998             8899999887

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=1.2e-11  Score=70.84  Aligned_cols=42  Identities=21%  Similarity=0.439  Sum_probs=39.0

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            588999999999999999999999999999999 588999984

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=4.2e-11  Score=69.15  Aligned_cols=45  Identities=24%  Similarity=0.337  Sum_probs=42.1

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|+++|.++++|.|++|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGC-------------CCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            47788999999999999999999999999999998             8899999987

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.5e-11  Score=71.13  Aligned_cols=42  Identities=29%  Similarity=0.527  Sum_probs=39.2

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999999999999999999 689999985

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=4.1e-11  Score=69.21  Aligned_cols=45  Identities=22%  Similarity=0.259  Sum_probs=42.0

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHV-------------DDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCC-------------SCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998             8899999887

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.3e-11  Score=71.40  Aligned_cols=42  Identities=33%  Similarity=0.502  Sum_probs=38.1

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.+...|..|+++ +++++|.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            478899999999999999999999999999998 688999985

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=4e-11  Score=69.28  Aligned_cols=45  Identities=22%  Similarity=0.390  Sum_probs=42.0

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTS-------------SCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998             8899999887

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.13  E-value=4.2e-11  Score=69.17  Aligned_cols=45  Identities=22%  Similarity=0.287  Sum_probs=42.0

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHS-------------GEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGT-------------SCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998             8899999887

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.13  E-value=3.2e-11  Score=69.70  Aligned_cols=45  Identities=24%  Similarity=0.366  Sum_probs=41.9

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGG-------------CCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998             8899999887

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=3.8e-11  Score=69.37  Aligned_cols=45  Identities=22%  Similarity=0.343  Sum_probs=41.9

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHT-------------KQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTS-------------CCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998             8899999876

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=3.3e-11  Score=69.66  Aligned_cols=45  Identities=22%  Similarity=0.278  Sum_probs=42.0

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHS-------------SSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHC-------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998             8899999887

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=3.6e-11  Score=69.51  Aligned_cols=45  Identities=24%  Similarity=0.344  Sum_probs=42.1

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHT-------------GYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHT-------------CCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            47788999999999999999999999999999998             8899999887

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=1.3e-11  Score=69.94  Aligned_cols=40  Identities=25%  Similarity=0.511  Sum_probs=37.0

Q ss_pred             hhccccCCceeecccccccccchhhHHHHHHH-hCCcceec
Q 026210          131 HFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC  170 (241)
Q Consensus       131 H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C  170 (241)
                      |+++|+++++|.|.+|++.|.....|..|+++ +++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            78889999999999999999999999999999 68899987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.5e-11  Score=70.13  Aligned_cols=45  Identities=22%  Similarity=0.367  Sum_probs=42.0

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHH-------------CSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            47788999999999999999999999999999998             8899999887

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=3.2e-11  Score=69.69  Aligned_cols=45  Identities=22%  Similarity=0.315  Sum_probs=42.0

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGS-------------SCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998             8899999987

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=3.6e-11  Score=69.47  Aligned_cols=45  Identities=22%  Similarity=0.409  Sum_probs=42.0

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHT-------------GERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSC-------------SCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhC-------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998             8899999887

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=3.4e-11  Score=69.58  Aligned_cols=45  Identities=27%  Similarity=0.358  Sum_probs=41.9

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHA-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHT-------------TSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998             8899999887

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.13  E-value=3.3e-11  Score=69.31  Aligned_cols=41  Identities=24%  Similarity=0.493  Sum_probs=36.3

Q ss_pred             ccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-CC
Q 026210          133 SRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CG  173 (241)
Q Consensus       133 ~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~  173 (241)
                      ..|+++++|.|.+|++.|..+..|..|+++ +++++|.|. ||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            468889999999999999999999999998 688999998 86

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=4.2e-11  Score=69.14  Aligned_cols=45  Identities=22%  Similarity=0.279  Sum_probs=42.0

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHM-------------GEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTC-------------CSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            47788999999999999999999999999999998             8899999887

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=4.5e-11  Score=69.06  Aligned_cols=45  Identities=27%  Similarity=0.372  Sum_probs=42.0

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGS-------------CCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998             8899999887

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=4.9e-11  Score=68.88  Aligned_cols=45  Identities=27%  Similarity=0.372  Sum_probs=41.9

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHS-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSC-------------CSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998             8899999887

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.9e-11  Score=70.71  Aligned_cols=42  Identities=24%  Similarity=0.481  Sum_probs=38.0

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            478889999999999999999999999999999 688999985

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=3.2e-11  Score=69.03  Aligned_cols=42  Identities=17%  Similarity=0.218  Sum_probs=38.6

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            2 SSGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CCSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            478899999999999999999999999999999 689999984

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.12  E-value=6.5e-11  Score=75.33  Aligned_cols=55  Identities=20%  Similarity=0.474  Sum_probs=32.7

Q ss_pred             CCCCccccc--cccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC--CCcccCCCCCcCCChhhHhhhhccc
Q 026210           61 ATNRFVCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE--STCVHHNPARALGDLTGIKKHFSRK  135 (241)
Q Consensus        61 ~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~--C~c~~~~~~~~f~~~~~l~~H~~~h  135 (241)
                      ..++|.|..  |++.|.....|..|+++|.             ++++|.|.+  |       ++.|.....|..|+++|
T Consensus        14 ~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~~~C-------~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           14 RIRSHICSHPGCGKTYFKSSHLKAHTRTHT-------------GEKPFSCSWKGC-------ERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCEECSSTTTCCEESSHHHHHHHHHHHS-------------SSCSEECCCTTC-------CCEESSHHHHHHHTTTC
T ss_pred             ccCceeCCCCCCccccCCHHHHHHHHHhcC-------------CCCCccCCCCCC-------CcccCCHHHHHhHhhcC
Confidence            345566655  6666666666666666665             555666643  5       56666666666665544

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=4.7e-11  Score=68.98  Aligned_cols=45  Identities=22%  Similarity=0.292  Sum_probs=41.7

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTT-------------TSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            47788999999999999999999999999999998             8899999875

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=3.8e-11  Score=69.37  Aligned_cols=45  Identities=22%  Similarity=0.304  Sum_probs=42.0

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHS-------------SCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998             8899999887

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.9e-11  Score=70.75  Aligned_cols=42  Identities=24%  Similarity=0.349  Sum_probs=36.7

Q ss_pred             hhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          131 HFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       131 H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      .+++|+++++|.|.+|++.|.+...|..|+++ +++++|.|. |
T Consensus         3 ~~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             CSSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            35678889999999999999999999999988 688999998 7

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=3.2e-11  Score=69.72  Aligned_cols=45  Identities=20%  Similarity=0.259  Sum_probs=42.0

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHH-------------CCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            47788999999999999999999999999999998             8899999887

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=3.1e-11  Score=69.12  Aligned_cols=42  Identities=29%  Similarity=0.445  Sum_probs=38.7

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCCC
Confidence            588999999999999999999999999999999 689999873

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=3.3e-11  Score=69.70  Aligned_cols=45  Identities=24%  Similarity=0.308  Sum_probs=41.9

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHF-------------REKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHH-------------STTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHc-------------CCCCCCCCCC
Confidence            47788999999999999999999999999999998             8899999887

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=3.2e-11  Score=69.73  Aligned_cols=45  Identities=24%  Similarity=0.327  Sum_probs=41.9

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHT-------------GGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHH-------------SCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998             8899999887

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=2.3e-11  Score=70.36  Aligned_cols=42  Identities=19%  Similarity=0.355  Sum_probs=38.6

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hC-CcceecC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CG-TREYKCD  171 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~-~k~~~C~  171 (241)
                      .|+++|+++++|.|.+|++.|.....|..|+++ ++ +++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            488999999999999999999999999999999 57 8999984

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=6.8e-11  Score=68.56  Aligned_cols=45  Identities=22%  Similarity=0.263  Sum_probs=41.9

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhh-hcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRR-GHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~-~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|.++|.++++|.|.+|++.|.....|..|++ +|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~-------------~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHT-------------GEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTT-------------TSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcC-------------CCCCCCCCCC
Confidence            47788999999999999999999999999999 998             8899999887

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=3.8e-11  Score=69.41  Aligned_cols=45  Identities=18%  Similarity=0.259  Sum_probs=41.7

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHT-------------GQRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHH-------------SCCCCCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            46778999999999999999999999999999998             8899999887

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=5.2e-11  Score=68.78  Aligned_cols=45  Identities=18%  Similarity=0.081  Sum_probs=41.8

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHM-------------GQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHS-------------CCSCCCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998             8899999887

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=4.4e-11  Score=69.13  Aligned_cols=45  Identities=24%  Similarity=0.428  Sum_probs=41.7

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .++++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHT-------------GEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHH-------------CCCCCCSCCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHHHc-------------CCCCCCCCCC
Confidence            46778899999999999999999999999999998             8899999987

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.09  E-value=4.7e-11  Score=69.74  Aligned_cols=41  Identities=20%  Similarity=0.374  Sum_probs=28.2

Q ss_pred             cccCCceeecccccccccchhhHHHHHHH-hCCcceecC-CCC
Q 026210          134 RKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGT  174 (241)
Q Consensus       134 ~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k  174 (241)
                      .|.++++|.|.+|++.|.....|..|+++ +++++|.|. |+|
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            34566677777777777777777777776 466777777 764

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=9.9e-11  Score=67.58  Aligned_cols=44  Identities=23%  Similarity=0.425  Sum_probs=40.8

Q ss_pred             CccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           55 SPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        55 ~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      +.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTS-------------SSCCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            4677889999999999999999999999999998             8899999887

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1e-10  Score=67.50  Aligned_cols=45  Identities=24%  Similarity=0.318  Sum_probs=41.4

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHC-------------CCCSSCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998             8899999865

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=8.2e-11  Score=67.98  Aligned_cols=41  Identities=24%  Similarity=0.439  Sum_probs=36.7

Q ss_pred             hhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          131 HFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       131 H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      ++++|+++++|.|.+|++.|.+...|..|+++ +++++|.|+
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            46788999999999999999999999999999 588999985

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=9.2e-11  Score=67.74  Aligned_cols=44  Identities=23%  Similarity=0.293  Sum_probs=40.7

Q ss_pred             CccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           55 SPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        55 ~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      ..++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         3 ~~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ytt_A            3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHT-------------REKPSGPSSG   46 (46)
T ss_dssp             CSSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHH-------------HCCCCSCCCC
T ss_pred             CCCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            4577889999999999999999999999999998             8899999987

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.05  E-value=1.8e-10  Score=69.02  Aligned_cols=49  Identities=20%  Similarity=0.409  Sum_probs=43.6

Q ss_pred             ccccCCCCCccccccccccCChhHHHHHhh-hcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCC
Q 026210           56 PKTLLATNRFVCEICNKGFQRDQNLQLHRR-GHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGD  124 (241)
Q Consensus        56 ~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~-~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~  124 (241)
                      ...+.++++|.|.+|++.|.....|..|++ +|.             ++++|.|.+|       ++.|.+
T Consensus         4 ~~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~-------------~~k~~~C~~C-------~k~F~~   53 (54)
T 2eps_A            4 GSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHT-------------SERPHKCQVW-------VSGPSS   53 (54)
T ss_dssp             CCCCCSSCCEECSSSCCEESSHHHHHHHHHHTSC-------------CCCCCCSSSS-------CCSSCC
T ss_pred             CCCCCCCCCeECCCCCcccCCHHHHHHHHHHhcC-------------CCCCccCCCC-------CCCCCC
Confidence            345678899999999999999999999997 898             8899999999       888864

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=8.7e-11  Score=68.41  Aligned_cols=42  Identities=19%  Similarity=0.401  Sum_probs=37.6

Q ss_pred             hhccccCCceeecc--cccccccchhhHHHHHHH-hCCcceecC-C
Q 026210          131 HFSRKHGEKKYKCE--RCSKKYAVQSDWKAHMKT-CGTREYKCD-C  172 (241)
Q Consensus       131 H~~~h~~ek~~~C~--~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C  172 (241)
                      |.++|+++++|.|.  .|++.|.....|..|+++ +++++|.|. |
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56788999999998  899999999999999999 588999998 7

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=2.1e-10  Score=66.17  Aligned_cols=44  Identities=23%  Similarity=0.286  Sum_probs=40.5

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTT-------------TSSCCCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhC-------------CCCCCCCCC
Confidence            46788999999999999999999999999999998             889999964

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.03  E-value=1.2e-11  Score=76.58  Aligned_cols=55  Identities=13%  Similarity=0.324  Sum_probs=47.8

Q ss_pred             HHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHH
Q 026210           80 LQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWK  157 (241)
Q Consensus        80 L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~  157 (241)
                      |..|+++|.             ++++|.|.+|       ++.|.....|.   ++|+++++|.|.+||+.|.....+.
T Consensus         2 L~~h~~~H~-------------~~k~~~C~~C-------~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A            2 IETDERDST-------------NRASFKCPVC-------SSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             CCCCSSSCC-------------SSSEEECSSS-------CCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCS
T ss_pred             hhhHHHHcC-------------CCCCccCCCC-------CchhccHHHhH---hhcCCCCCEECCCCCCccccCcccc
Confidence            446778887             8999999999       99999888876   7899999999999999999876643

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=2.2e-10  Score=66.10  Aligned_cols=44  Identities=25%  Similarity=0.439  Sum_probs=40.6

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTS-------------SSCCCCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            46788999999999999999999999999999998             889999964

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=2.3e-10  Score=66.03  Aligned_cols=44  Identities=25%  Similarity=0.388  Sum_probs=40.5

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHT-------------GERPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTS-------------CCCCSCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            46788999999999999999999999999999998             889999974

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.8e-10  Score=66.46  Aligned_cols=44  Identities=25%  Similarity=0.374  Sum_probs=40.7

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTS-------------CCCCCSSCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            47788999999999999999999999999999998             889999974

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=2.2e-10  Score=66.17  Aligned_cols=44  Identities=18%  Similarity=0.325  Sum_probs=40.3

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHS-------------GERPSGPSS   45 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTT-------------SCCSCTTSC
T ss_pred             CCCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcC-------------CCCCCCCCC
Confidence            36788999999999999999999999999999998             889999974

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=2.3e-10  Score=65.97  Aligned_cols=44  Identities=20%  Similarity=0.329  Sum_probs=40.6

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHT-------------GENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGS-------------SSCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            57788999999999999999999999999999998             889999964

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=2.5e-10  Score=65.84  Aligned_cols=44  Identities=23%  Similarity=0.329  Sum_probs=40.5

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGC-------------CCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            46788999999999999999999999999999998             889999964

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=2.4e-10  Score=65.97  Aligned_cols=44  Identities=20%  Similarity=0.290  Sum_probs=40.4

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHT-------------GERSSGPSS   45 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCS-------------SCCSCSTTC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            46788999999999999999999999999999998             889999964

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1e-10  Score=67.23  Aligned_cols=41  Identities=20%  Similarity=0.477  Sum_probs=36.3

Q ss_pred             hhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          131 HFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       131 H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      +.++|+++++|.|.+|++.|.....|..|+++ +++++|.|.
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            45678999999999999999999999999998 588999884

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=2.3e-10  Score=66.00  Aligned_cols=44  Identities=27%  Similarity=0.396  Sum_probs=40.6

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSC-------------SSSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            46788999999999999999999999999999998             889999975

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=2.4e-10  Score=65.89  Aligned_cols=44  Identities=23%  Similarity=0.296  Sum_probs=40.4

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTS-------------CSCCSSTTC
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcC-------------CCCCCCCCC
Confidence            46788999999999999999999999999999998             789999964

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=2e-10  Score=66.19  Aligned_cols=44  Identities=20%  Similarity=0.345  Sum_probs=40.6

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHS-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHC-------------CCSCSCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            46788999999999999999999999999999998             889999964

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.02  E-value=2.1e-10  Score=66.21  Aligned_cols=44  Identities=25%  Similarity=0.311  Sum_probs=40.5

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHT-------------TSCSSSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            46788999999999999999999999999999998             889999974

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.6e-10  Score=65.75  Aligned_cols=44  Identities=25%  Similarity=0.383  Sum_probs=40.5

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTS-------------SCCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcC-------------CCCCcCCCC
Confidence            46788999999999999999999999999999998             889999964

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.2e-10  Score=66.07  Aligned_cols=44  Identities=20%  Similarity=0.391  Sum_probs=40.6

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHC-------------CCCCCCSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            46788999999999999999999999999999998             889999964

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.7e-10  Score=65.69  Aligned_cols=44  Identities=23%  Similarity=0.351  Sum_probs=40.5

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHR-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGC-------------SCCCCSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhC-------------CCCCCCCCC
Confidence            46788999999999999999999999999999998             889999964

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=3e-10  Score=65.50  Aligned_cols=44  Identities=27%  Similarity=0.383  Sum_probs=40.4

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGT-------------TCCCSSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcC-------------CCCCCCCCC
Confidence            46788999999999999999999999999999998             889999964

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=1.9e-10  Score=66.33  Aligned_cols=44  Identities=25%  Similarity=0.349  Sum_probs=40.6

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHS-------------SSSCCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcC-------------CCCCCCCCC
Confidence            46788999999999999999999999999999998             889999975

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=3e-10  Score=65.48  Aligned_cols=44  Identities=23%  Similarity=0.303  Sum_probs=40.4

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTC-------------CSCCSSCCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            46788999999999999999999999999999998             789999964

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.8e-10  Score=65.67  Aligned_cols=44  Identities=25%  Similarity=0.358  Sum_probs=40.5

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHT-------------SSCCCSCCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            46788999999999999999999999999999998             889999964

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.00  E-value=2.8e-10  Score=64.25  Aligned_cols=42  Identities=24%  Similarity=0.393  Sum_probs=38.3

Q ss_pred             CccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCC
Q 026210           55 SPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCP  109 (241)
Q Consensus        55 ~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~  109 (241)
                      |+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHA-------------GESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGC-------------CCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcC-------------CCCCCCCC
Confidence            4567889999999999999999999999999998             78899884

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=2.4e-10  Score=64.98  Aligned_cols=39  Identities=15%  Similarity=0.381  Sum_probs=33.8

Q ss_pred             ccccCCceeecccccccccchhhHHHHHHH-hCCcceecC
Q 026210          133 SRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       133 ~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      ++|+++++|.|.+|++.|.....|..|+++ +++++|.|+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            467888999999999999999999999988 588899884

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=3.6e-10  Score=65.15  Aligned_cols=44  Identities=23%  Similarity=0.393  Sum_probs=39.9

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|..
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHS-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSC-------------CSCCCCCCC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            35678899999999999999999999999999998             789999864

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=3.4e-10  Score=63.83  Aligned_cols=42  Identities=17%  Similarity=0.302  Sum_probs=38.2

Q ss_pred             CccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCC
Q 026210           55 SPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCP  109 (241)
Q Consensus        55 ~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~  109 (241)
                      |+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHT-------------VKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTS-------------CCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhC-------------CCCCCCCC
Confidence            4567889999999999999999999999999998             78899883

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=3.1e-10  Score=65.39  Aligned_cols=44  Identities=25%  Similarity=0.337  Sum_probs=40.5

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTS-------------SCCSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            46788999999999999999999999999999998             889999964

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.99  E-value=4.4e-10  Score=65.46  Aligned_cols=42  Identities=29%  Similarity=0.456  Sum_probs=38.8

Q ss_pred             cccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           57 KTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        57 ~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      ..+..+++|.|.+|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (48)
T 2epr_A            5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHS-------------GEKPYSSGPS   46 (48)
T ss_dssp             SCCCCCCSEEETTTTEEESSHHHHHHHGGGSC-------------SCCCCCSCCC
T ss_pred             CCCCCCcCeeCCCCCcccCCHHHHHHHHHhcC-------------CCCCccCCCC
Confidence            35667899999999999999999999999998             8899999999

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=1.7e-10  Score=64.83  Aligned_cols=38  Identities=21%  Similarity=0.529  Sum_probs=32.8

Q ss_pred             ccccCCceeecccccccccchhhHHHHHHH-hCCcceec
Q 026210          133 SRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC  170 (241)
Q Consensus       133 ~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C  170 (241)
                      ++|+++++|.|.+|++.|.....|..|+++ +++++|.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            467888999999999999999999999888 58888887

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=3.4e-10  Score=64.54  Aligned_cols=43  Identities=23%  Similarity=0.372  Sum_probs=39.5

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCP  109 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~  109 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHT-------------GESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTC-------------CSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcC-------------CCCCCCCC
Confidence            46788999999999999999999999999999998             78899884

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=3.5e-10  Score=65.25  Aligned_cols=44  Identities=27%  Similarity=0.323  Sum_probs=40.2

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhc-CccccCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVR-KKVYVCPE  110 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~-~~~~~C~~  110 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             + +++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~~C~~   46 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHT-------------RGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCC-------------SCCTTSSSCC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998             7 89999864

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=4.1e-10  Score=64.86  Aligned_cols=44  Identities=23%  Similarity=0.286  Sum_probs=40.4

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHT-------------GKKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSC-------------CCCCCCSCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            47788999999999999999999999999999998             789999864

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=3.1e-10  Score=65.47  Aligned_cols=44  Identities=20%  Similarity=0.391  Sum_probs=40.4

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHT-------------GERHSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHT-------------CCCBTTTBC
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcC-------------CCCCCCCCC
Confidence            47788999999999999999999999999999998             889999864

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.98  E-value=3.4e-10  Score=64.95  Aligned_cols=42  Identities=21%  Similarity=0.448  Sum_probs=39.3

Q ss_pred             cccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           57 KTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        57 ~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      ..|.++++|.|.+|++.|.....|..|+++|.             ++++|.|++|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~-------------~~~~~~C~~c   44 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHD-------------GSVGKSGPSS   44 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHS-------------CCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHcc-------------CCCCCCCcCC
Confidence            46778999999999999999999999999998             8899999998

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=3.6e-10  Score=64.48  Aligned_cols=43  Identities=23%  Similarity=0.316  Sum_probs=39.5

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCP  109 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~  109 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHS-------------GQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSS-------------SSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcC-------------CCCCCCCC
Confidence            46788999999999999999999999999999998             78889884

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=3.3e-10  Score=65.34  Aligned_cols=44  Identities=20%  Similarity=0.353  Sum_probs=40.4

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHT-------------QETLSGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHS-------------SCCSSSCCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            46788999999999999999999999999999998             889999864

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.4e-10  Score=65.84  Aligned_cols=44  Identities=30%  Similarity=0.372  Sum_probs=40.4

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHH-------------SCCCSSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcC-------------CCCCCCCCC
Confidence            46788999999999999999999999999999998             789999975

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=4.1e-10  Score=64.17  Aligned_cols=43  Identities=23%  Similarity=0.383  Sum_probs=39.5

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCP  109 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~  109 (241)
                      .|+++|.++++|.|.+|++.|....+|..|+++|.             ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHT-------------GESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTT-------------TSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhC-------------CCCCCCCC
Confidence            46788999999999999999999999999999998             78899884

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.8e-10  Score=65.64  Aligned_cols=44  Identities=32%  Similarity=0.400  Sum_probs=40.5

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHS-------------REKSSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHH-------------HTTCCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            46788999999999999999999999999999998             889999964

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=4.8e-10  Score=63.96  Aligned_cols=43  Identities=28%  Similarity=0.381  Sum_probs=39.5

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCP  109 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~  109 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHA-------------RKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCC-------------CCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcC-------------CCCCCCCC
Confidence            46788999999999999999999999999999998             78889884

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=5.1e-10  Score=63.85  Aligned_cols=43  Identities=21%  Similarity=0.313  Sum_probs=39.6

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCP  109 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~  109 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHA-------------AKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGC-------------CCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcC-------------CCCCcCCC
Confidence            46788999999999999999999999999999998             78899884

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=4.5e-10  Score=63.38  Aligned_cols=41  Identities=27%  Similarity=0.357  Sum_probs=37.7

Q ss_pred             CccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccC
Q 026210           55 SPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVC  108 (241)
Q Consensus        55 ~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C  108 (241)
                      |.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHT-------------GSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTS-------------CCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcC-------------CCCCCCC
Confidence            5678889999999999999999999999999998             7888887

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.94  E-value=5.3e-10  Score=63.02  Aligned_cols=41  Identities=20%  Similarity=0.387  Sum_probs=37.7

Q ss_pred             CccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccC
Q 026210           55 SPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVC  108 (241)
Q Consensus        55 ~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C  108 (241)
                      |.++|.++++|.|.+|++.|....+|..|+++|.             ++++|.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~-------------~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCS-------------QSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTT-------------CCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcC-------------CCCCCCC
Confidence            5678889999999999999999999999999998             7888887

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=7.4e-10  Score=64.36  Aligned_cols=44  Identities=27%  Similarity=0.369  Sum_probs=40.7

Q ss_pred             CccccCCCCCcccc--ccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCC
Q 026210           55 SPKTLLATNRFVCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        55 ~~~~~~~~~~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      +.++|.++++|.|.  .|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHS-------------GVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSC-------------CCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            56788899999998  89999999999999999998             8899999887

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=6.3e-10  Score=63.79  Aligned_cols=43  Identities=28%  Similarity=0.386  Sum_probs=38.9

Q ss_pred             CccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC
Q 026210           55 SPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        55 ~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      +..+|.++++|.|.+|++.|.....|..|+++|.             ++++|.|..
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHT-------------GEKSGPSSG   45 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTS-------------SCCCCCSCC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhC-------------CCCCCCCCC
Confidence            4567889999999999999999999999999998             889999863

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=7.2e-10  Score=63.88  Aligned_cols=43  Identities=26%  Similarity=0.247  Sum_probs=39.1

Q ss_pred             CccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC
Q 026210           55 SPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        55 ~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      ..+.|.++++|.|.+|++.|....+|..|+++|.             ++++|.|.+
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHS-------------SCCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhC-------------CCCCCCCCC
Confidence            4567889999999999999999999999999998             889999964

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=3.4e-10  Score=63.84  Aligned_cols=41  Identities=15%  Similarity=0.251  Sum_probs=38.3

Q ss_pred             HhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeec
Q 026210           83 HRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKC  143 (241)
Q Consensus        83 H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C  143 (241)
                      |+++|.             ++++|.|.+|       ++.|.....|..|+++|+++++|.|
T Consensus         2 H~~~H~-------------~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSG-------------GEKPYRCDQC-------GKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCC-------------SCCSBCCTTT-------TCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccC-------------CCCCeeCCCc-------cchhCCHHHHHHHHHHhCCCCCCCC
Confidence            677777             8899999999       9999999999999999999999988

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=7.1e-10  Score=62.94  Aligned_cols=41  Identities=17%  Similarity=0.298  Sum_probs=37.5

Q ss_pred             cccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCC
Q 026210           57 KTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        57 ~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      ++|.++++|.|.+|++.|.....|..|+++|+             ++++|.|.+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTH-------------SDKSGPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHT-------------CTTCSSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhC-------------CCCCccCCC
Confidence            46788999999999999999999999999998             889999964

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=6.6e-10  Score=63.37  Aligned_cols=42  Identities=21%  Similarity=0.173  Sum_probs=38.6

Q ss_pred             CccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCC
Q 026210           55 SPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCP  109 (241)
Q Consensus        55 ~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~  109 (241)
                      |..+|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHA-------------GESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHT-------------TSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHC-------------CCCCCCCC
Confidence            5678889999999999999999999999999998             78899884

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.93  E-value=3.6e-10  Score=74.88  Aligned_cols=62  Identities=19%  Similarity=0.272  Sum_probs=51.3

Q ss_pred             cccCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhh
Q 026210           52 IALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKH  131 (241)
Q Consensus        52 ~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H  131 (241)
                      +..+..+|.++++|.|.+|++.|.....|..|+++|.             ++++|.|..|       .+    ...|..|
T Consensus        13 ~~~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht-------------~ekp~~C~~~-------~~----~~~~~~~   68 (88)
T 1x6f_A           13 IILGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHN-------------EEFQKRAKRQ-------ER----RKQLLSK   68 (88)
T ss_dssp             CCCCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHH-------------HHHHHHCCCC-------SC----CCCCCCC
T ss_pred             eeccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhC-------------CCCCcccchh-------hh----HHHHHhh
Confidence            4455677889999999999999999999999999998             7899999877       32    4456678


Q ss_pred             hccccC
Q 026210          132 FSRKHG  137 (241)
Q Consensus       132 ~~~h~~  137 (241)
                      .+.|.+
T Consensus        69 ~~~~~~   74 (88)
T 1x6f_A           69 QKYADG   74 (88)
T ss_dssp             CCCCCC
T ss_pred             hccccc
Confidence            888876

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.92  E-value=1.3e-10  Score=69.62  Aligned_cols=52  Identities=13%  Similarity=0.195  Sum_probs=48.0

Q ss_pred             ccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceee
Q 026210           71 NKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYK  142 (241)
Q Consensus        71 ~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~  142 (241)
                      ++.|.....|..|+++|.             ++++|.|.+|       ++.|.....|..|+++|+++++|.
T Consensus         3 ~k~~~~~~~l~~h~~~H~-------------~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQ-------------SEQPATCPIC-------YAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHT-------------SSCCEECTTT-------CCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhcC-------------CCCCccCCCC-------CcccCCHHHHHHHHHHhccCCCCC
Confidence            467888889999999998             8899999999       999999999999999999999874

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=4.1e-10  Score=63.50  Aligned_cols=41  Identities=20%  Similarity=0.243  Sum_probs=37.6

Q ss_pred             CccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccC
Q 026210           55 SPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVC  108 (241)
Q Consensus        55 ~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C  108 (241)
                      |.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHT-------------GSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHH-------------SCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcC-------------CCCCCCC
Confidence            5678889999999999999999999999999998             7888877

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=4.8e-10  Score=64.62  Aligned_cols=43  Identities=23%  Similarity=0.284  Sum_probs=39.8

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCP  109 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~  109 (241)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHE-------------RTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHH-------------HSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhC-------------CCCCCCCC
Confidence            46788999999999999999999999999999998             88999985

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=6.3e-10  Score=63.43  Aligned_cols=43  Identities=26%  Similarity=0.342  Sum_probs=39.4

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccCC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCP  109 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C~  109 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHT-------------RKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHC-------------CCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhC-------------CCCCCCCC
Confidence            46788999999999999999999999999999998             78899883

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.90  E-value=7.5e-11  Score=78.22  Aligned_cols=60  Identities=12%  Similarity=0.328  Sum_probs=49.0

Q ss_pred             hhhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-CCCCcCCcchHHHHHHhccCc
Q 026210          129 KKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITHRAFCDAL  192 (241)
Q Consensus       129 ~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~~~~L~~H~~~~~~~  192 (241)
                      ..|.++|+++++|.|.+|++.|.....|..|+++ +++++|.|. |.+    ...|..|++.|.+.
T Consensus        14 ~~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~----~~~~~~~~~~~~~~   75 (88)
T 1x6f_A           14 ILGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQER----RKQLLSKQKYADGA   75 (88)
T ss_dssp             CCCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSC----CCCCCCCCCCCCCS
T ss_pred             eccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhh----HHHHHhhhcccccc
Confidence            3456779999999999999999999999999999 689999997 764    44555677766643

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=1.4e-09  Score=62.06  Aligned_cols=42  Identities=21%  Similarity=0.266  Sum_probs=38.5

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVC  108 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C  108 (241)
                      .|.++|.++++|.|.+|++.|.....|..|+++|.             ++++|.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHA-------------GVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGS-------------SCSCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhc-------------CCCCCCC
Confidence            46788999999999999999999999999999998             7888876

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=1.4e-09  Score=60.93  Aligned_cols=39  Identities=23%  Similarity=0.391  Sum_probs=35.8

Q ss_pred             cccCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccC
Q 026210           57 KTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVC  108 (241)
Q Consensus        57 ~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C  108 (241)
                      .+|.++++|.|.+|++.|.....|..|+++|.             ++++|.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHT-------------GSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCC-------------CCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhC-------------CCCCcCC
Confidence            46788999999999999999999999999998             7888887

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.80  E-value=2.2e-09  Score=59.46  Aligned_cols=36  Identities=17%  Similarity=0.367  Sum_probs=27.1

Q ss_pred             ccCCceeecccccccccchhhHHHHHHH-hCCcceec
Q 026210          135 KHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC  170 (241)
Q Consensus       135 h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C  170 (241)
                      |+++++|.|.+|++.|.....|..|+++ +++++|.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            4567788888888888888888888877 47777764

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=2.8e-09  Score=58.13  Aligned_cols=36  Identities=25%  Similarity=0.397  Sum_probs=29.4

Q ss_pred             hccccCCceeecccccccccchhhHHHHHHH-hCCcc
Q 026210          132 FSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTRE  167 (241)
Q Consensus       132 ~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~  167 (241)
                      +++|+++++|.|.+|++.|.....|..|+++ ++++|
T Consensus         1 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            1 GSSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            3568888999999999999999999999888 46553

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.76  E-value=3.8e-09  Score=57.58  Aligned_cols=33  Identities=18%  Similarity=0.443  Sum_probs=27.0

Q ss_pred             hhccccCCceeecccccccccchhhHHHHHHHh
Q 026210          131 HFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTC  163 (241)
Q Consensus       131 H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~~  163 (241)
                      |+++|+++++|.|.+|++.|.....|..|+++|
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   34 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHh
Confidence            677888888888888888888888888888773

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=2.7e-09  Score=68.40  Aligned_cols=51  Identities=24%  Similarity=0.441  Sum_probs=26.9

Q ss_pred             cCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHH
Q 026210          102 RKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       102 ~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      +++++.|.+|       ++.| ....|..|+ .|.++++|.|..|++.|.+ ..|..|+++
T Consensus        14 ~~r~~~C~~C-------~~~~-~~~~L~~H~-~~c~~~~~~C~~C~~~~~~-~~l~~H~~~   64 (75)
T 2d9k_A           14 PLRLAVCQHC-------DLEL-SILKLKEHE-DYCGARTELCGNCGRNVLV-KDLKTHPEV   64 (75)
T ss_dssp             CCCCEECSSS-------CCEE-CHHHHHHHH-HHHHHCEEECSSSCCEEET-TGGGTHHHH
T ss_pred             CCcccCCccc-------ChHh-hHHHHHHHH-hHcCCCceEcccCCCcCcH-HHHHHHHHH
Confidence            4555555555       4555 255555555 5555555555555555442 455555555

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.76  E-value=4.7e-09  Score=64.96  Aligned_cols=37  Identities=16%  Similarity=0.304  Sum_probs=31.0

Q ss_pred             cccCCceeeccc--ccccccchhhHHHHH-HH-hCCcceec
Q 026210          134 RKHGEKKYKCER--CSKKYAVQSDWKAHM-KT-CGTREYKC  170 (241)
Q Consensus       134 ~h~~ek~~~C~~--C~k~f~~~~~L~~H~-~~-~~~k~~~C  170 (241)
                      .++++|||+|.+  |++.|.+.+.|..|+ ++ +++|||.|
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~   61 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFS   61 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCC
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccc
Confidence            357899999965  999999999999997 45 48899988

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.69  E-value=1.1e-08  Score=56.53  Aligned_cols=37  Identities=22%  Similarity=0.486  Sum_probs=32.5

Q ss_pred             cCCCCCccccccccccCChhHHHHHhhhcCCCchhhhcchhhhcCccccC
Q 026210           59 LLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVC  108 (241)
Q Consensus        59 ~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~C  108 (241)
                      |.++++|.|.+|++.|.....|..|+++|.             ++++|.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHR-------------RDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTC-------------CSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcC-------------CCcccee
Confidence            456789999999999999999999999998             7777765

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.69  E-value=1.1e-08  Score=54.93  Aligned_cols=32  Identities=25%  Similarity=0.612  Sum_probs=22.8

Q ss_pred             ccCCceeecccccccccchhhHHHHHHH-hCCc
Q 026210          135 KHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTR  166 (241)
Q Consensus       135 h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k  166 (241)
                      |+++++|.|.+|++.|.....|..|+++ ++++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            5667777777777777777777777777 4544

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.66  E-value=1.4e-08  Score=54.54  Aligned_cols=32  Identities=19%  Similarity=0.544  Sum_probs=22.2

Q ss_pred             ccCCceeecccccccccchhhHHHHHHH-hCCc
Q 026210          135 KHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTR  166 (241)
Q Consensus       135 h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k  166 (241)
                      |+++++|.|.+|++.|.....|..|+++ ++++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            5667777777777777777777777776 3443

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.62  E-value=1.2e-08  Score=55.26  Aligned_cols=26  Identities=19%  Similarity=0.420  Sum_probs=22.1

Q ss_pred             ccCCceeecccccccccchhhHHHHH
Q 026210          135 KHGEKKYKCERCSKKYAVQSDWKAHM  160 (241)
Q Consensus       135 h~~ek~~~C~~C~k~f~~~~~L~~H~  160 (241)
                      +.+|+||.|.+||+.|.+++.|.+|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            46788888888888888888888887

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.61  E-value=3.2e-08  Score=61.23  Aligned_cols=42  Identities=24%  Similarity=0.296  Sum_probs=36.3

Q ss_pred             cccCCCCCccccc--cccccCChhHHHHHh-hhcCCCchhhhcchhhhcCccccCCCC
Q 026210           57 KTLLATNRFVCEI--CNKGFQRDQNLQLHR-RGHNLPWKLKQRNSKEVRKKVYVCPES  111 (241)
Q Consensus        57 ~~~~~~~~~~C~~--C~~~f~~~~~L~~H~-~~h~~~~~~~~~~~~~~~~~~~~C~~C  111 (241)
                      ....+++||+|.+  |++.|....+|..|+ ++|+             ++++|.|.+-
T Consensus        20 ~~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHT-------------gEKP~~~~~~   64 (73)
T 1x3c_A           20 TRYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHK-------------SDLPAFSAEV   64 (73)
T ss_dssp             SSSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSS-------------SCCCCCCCSC
T ss_pred             ccccCCCCeECCCCCcChhHcCHHHHHHHhhhhCC-------------CCCCcccccc
Confidence            3456889999976  999999999999998 6899             8999998653

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=3e-08  Score=54.06  Aligned_cols=32  Identities=19%  Similarity=0.304  Sum_probs=25.4

Q ss_pred             hccccCCceeecccccccccchhhHHHH-HHHh
Q 026210          132 FSRKHGEKKYKCERCSKKYAVQSDWKAH-MKTC  163 (241)
Q Consensus       132 ~~~h~~ek~~~C~~C~k~f~~~~~L~~H-~~~~  163 (241)
                      +++|+++++|.|.+|++.|..+..|..| ++.|
T Consensus         1 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H   33 (37)
T 2elm_A            1 GSSGSSGHLYYCSQCHYSSITKNCLKRHVIQKH   33 (37)
T ss_dssp             CCSSSSSCEEECSSSSCEEECHHHHHHHHHHHT
T ss_pred             CCccCCCcCeECCCCCcccCCHHHHHHHHHHHc
Confidence            3567888888888888888888888888 6664

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.58  E-value=3.2e-08  Score=53.80  Aligned_cols=32  Identities=19%  Similarity=0.522  Sum_probs=30.0

Q ss_pred             cccCCCCCccccccccccCChhHHHHHhhhcC
Q 026210           57 KTLLATNRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        57 ~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      ++|.++++|.|.+|++.|....+|..|+++|+
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~   33 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNH   33 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHc
Confidence            46788999999999999999999999999997

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.57  E-value=4.7e-08  Score=53.07  Aligned_cols=34  Identities=32%  Similarity=0.670  Sum_probs=31.9

Q ss_pred             CccccCCCCCccccccccccCChhHHHHHhhhcC
Q 026210           55 SPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        55 ~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      |.++|.++++|.|..|++.|.....|..|+++|.
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   35 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhc
Confidence            5678899999999999999999999999999986

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.56  E-value=3.8e-08  Score=52.19  Aligned_cols=31  Identities=19%  Similarity=0.417  Sum_probs=18.7

Q ss_pred             ceeecccccccccchhhHHHHHHH-hCCccee
Q 026210          139 KKYKCERCSKKYAVQSDWKAHMKT-CGTREYK  169 (241)
Q Consensus       139 k~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~  169 (241)
                      ++|.|.+||+.|.....|..|+++ +++++|.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            356666666666666666666666 3555553

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.55  E-value=4.6e-08  Score=53.49  Aligned_cols=34  Identities=15%  Similarity=0.430  Sum_probs=28.6

Q ss_pred             ccCCceeecc--cccccccchhhHHHHHHH-hCCcce
Q 026210          135 KHGEKKYKCE--RCSKKYAVQSDWKAHMKT-CGTREY  168 (241)
Q Consensus       135 h~~ek~~~C~--~C~k~f~~~~~L~~H~~~-~~~k~~  168 (241)
                      |+++++|.|.  .|++.|.....|..|+++ +++++|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            5678899998  599999999999999988 577776

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.54  E-value=5.4e-08  Score=52.11  Aligned_cols=31  Identities=29%  Similarity=0.504  Sum_probs=28.8

Q ss_pred             ccCCCCCccccccccccCChhHHHHHhhhcC
Q 026210           58 TLLATNRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        58 ~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      +|.++++|.|.+|++.|.....|..|+++|+
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   31 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcC
Confidence            3678899999999999999999999999997

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.54  E-value=5.1e-08  Score=52.14  Aligned_cols=30  Identities=27%  Similarity=0.505  Sum_probs=28.3

Q ss_pred             cCCCCCccccccccccCChhHHHHHhhhcC
Q 026210           59 LLATNRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        59 ~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      |.++++|.|.+|++.|....+|..|++.|+
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   31 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVH   31 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHc
Confidence            567899999999999999999999999997

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=5.4e-08  Score=52.85  Aligned_cols=33  Identities=24%  Similarity=0.416  Sum_probs=25.7

Q ss_pred             ccccCCceeecccccccccch-hhHHHHHHH-hCC
Q 026210          133 SRKHGEKKYKCERCSKKYAVQ-SDWKAHMKT-CGT  165 (241)
Q Consensus       133 ~~h~~ek~~~C~~C~k~f~~~-~~L~~H~~~-~~~  165 (241)
                      ++|+++++|.|.+|++.|... ..|..|+++ +++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            457778888888888888888 888888877 344

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.52  E-value=4.9e-08  Score=51.71  Aligned_cols=26  Identities=35%  Similarity=0.651  Sum_probs=24.9

Q ss_pred             CCccccccccccCChhHHHHHhhhcC
Q 026210           63 NRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        63 ~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      ++|.|.+||+.|.....|..|+++|.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~   26 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHE   26 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhC
Confidence            57999999999999999999999998

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=7.7e-08  Score=51.81  Aligned_cols=30  Identities=27%  Similarity=0.604  Sum_probs=23.6

Q ss_pred             cccCCceeecccccccccchhhHHHHHHHh
Q 026210          134 RKHGEKKYKCERCSKKYAVQSDWKAHMKTC  163 (241)
Q Consensus       134 ~h~~ek~~~C~~C~k~f~~~~~L~~H~~~~  163 (241)
                      +|+++++|.|.+|++.|.....|..|+++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKH   32 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHc
Confidence            467778888888888888888888888773

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=7.6e-08  Score=52.83  Aligned_cols=29  Identities=21%  Similarity=0.319  Sum_probs=21.7

Q ss_pred             ccCCceeeccc--ccccccchhhHHHHHHHh
Q 026210          135 KHGEKKYKCER--CSKKYAVQSDWKAHMKTC  163 (241)
Q Consensus       135 h~~ek~~~C~~--C~k~f~~~~~L~~H~~~~  163 (241)
                      +++++||+|.+  |++.|.+++.|..|+++|
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~H   34 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVH   34 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhc
Confidence            56777777765  777777777777777774

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=7.6e-08  Score=51.90  Aligned_cols=30  Identities=30%  Similarity=0.496  Sum_probs=22.5

Q ss_pred             cccCCceeecccccccccchhhHHHHHHHh
Q 026210          134 RKHGEKKYKCERCSKKYAVQSDWKAHMKTC  163 (241)
Q Consensus       134 ~h~~ek~~~C~~C~k~f~~~~~L~~H~~~~  163 (241)
                      .|+++++|.|.+|++.|.....|..|+++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRH   32 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHS
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHh
Confidence            466777777777777777777777777773

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.46  E-value=7.5e-08  Score=51.93  Aligned_cols=30  Identities=23%  Similarity=0.460  Sum_probs=21.3

Q ss_pred             cccCCceeecccccccccchhhHHHHHHHh
Q 026210          134 RKHGEKKYKCERCSKKYAVQSDWKAHMKTC  163 (241)
Q Consensus       134 ~h~~ek~~~C~~C~k~f~~~~~L~~H~~~~  163 (241)
                      .|+++++|.|.+|++.|.....|..|+++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVH   32 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTT
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHh
Confidence            456677777777777777777777777663

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.45  E-value=6.8e-08  Score=55.69  Aligned_cols=38  Identities=16%  Similarity=0.488  Sum_probs=31.5

Q ss_pred             HhhhhccccCCceeecc--cccccccchhhHHHHHHHh-CC
Q 026210          128 IKKHFSRKHGEKKYKCE--RCSKKYAVQSDWKAHMKTC-GT  165 (241)
Q Consensus       128 l~~H~~~h~~ek~~~C~--~C~k~f~~~~~L~~H~~~~-~~  165 (241)
                      +..|...|+++++|.|.  .|++.|...+.|..|+++| ++
T Consensus         6 ~~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A            6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             SGGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             HHHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            34566779999999996  6999999999999999984 54

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.44  E-value=1.2e-07  Score=51.00  Aligned_cols=30  Identities=23%  Similarity=0.412  Sum_probs=21.1

Q ss_pred             cccCCceeecccccccccchhhHHHHHHHh
Q 026210          134 RKHGEKKYKCERCSKKYAVQSDWKAHMKTC  163 (241)
Q Consensus       134 ~h~~ek~~~C~~C~k~f~~~~~L~~H~~~~  163 (241)
                      .|+++++|.|.+|++.|.....|..|+++|
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLH   32 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHH
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHh
Confidence            456677777777777777777777777763

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.44  E-value=8.5e-08  Score=55.58  Aligned_cols=27  Identities=30%  Similarity=0.584  Sum_probs=14.4

Q ss_pred             CCcceecC-CCCCcCCcchHHHHHH-hcc
Q 026210          164 GTREYKCD-CGTIFSRRDSFITHRA-FCD  190 (241)
Q Consensus       164 ~~k~~~C~-C~k~f~~~~~L~~H~~-~~~  190 (241)
                      ++++|.|. |++.|.....|..|++ +|.
T Consensus         4 ~~kp~~C~~C~k~F~~~~~L~~H~~~~H~   32 (48)
T 3iuf_A            4 RDKPYACDICGKRYKNRPGLSYHYAHSHL   32 (48)
T ss_dssp             TTSCEECTTTCCEESSHHHHHHHHHHSSC
T ss_pred             CCcCEECCCcCcccCCHHHHHHHhhhhcC
Confidence            44555555 5555555555555555 444

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.43  E-value=3.5e-07  Score=56.69  Aligned_cols=28  Identities=21%  Similarity=0.509  Sum_probs=19.0

Q ss_pred             CCcceecC-CCCCcCCcchHHHHHHhccC
Q 026210          164 GTREYKCD-CGTIFSRRDSFITHRAFCDA  191 (241)
Q Consensus       164 ~~k~~~C~-C~k~f~~~~~L~~H~~~~~~  191 (241)
                      ++|+|.|. |+|.|.+.+.|.+|+++|.+
T Consensus        10 ~ekpy~C~~CgK~F~~~s~L~~H~r~Htg   38 (66)
T 2epp_A           10 EAGILPCGLCGKVFTDANRLRQHEAQHGV   38 (66)
T ss_dssp             CCCCCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             CccCcCCCCCCCccCCHHHHHhhhhhhCC
Confidence            45667776 77777777777777777665

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.43  E-value=2.1e-07  Score=57.71  Aligned_cols=38  Identities=13%  Similarity=0.254  Sum_probs=30.1

Q ss_pred             cccCCceeecccccccccchhhHHHHHHHhCCcceecC
Q 026210          134 RKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTREYKCD  171 (241)
Q Consensus       134 ~h~~ek~~~C~~C~k~f~~~~~L~~H~~~~~~k~~~C~  171 (241)
                      .|.++++|.|.+|++.|.++..|..|+++|......|.
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~~~~~   44 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEAQHGVTSLQLG   44 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTSCCCC
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCccccc
Confidence            46778999999999999999999999999643344444

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.43  E-value=1.4e-07  Score=50.82  Aligned_cols=31  Identities=19%  Similarity=0.385  Sum_probs=28.9

Q ss_pred             ccCCCCCccccccccccCChhHHHHHhhhcC
Q 026210           58 TLLATNRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        58 ~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      .|.++++|.|.+|++.|.....|..|+++|.
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHG   33 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTS
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhc
Confidence            5678899999999999999999999999997

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=1.5e-07  Score=50.64  Aligned_cols=32  Identities=22%  Similarity=0.459  Sum_probs=29.5

Q ss_pred             cccCCCCCccccccccccCChhHHHHHhhhcC
Q 026210           57 KTLLATNRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        57 ~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      .+|.++++|+|.+|++.|.....|..|+++|.
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elq_A            2 SSGSSGKPFKCSLCEYATRSKSNLKAHMNRHS   33 (36)
T ss_dssp             CSSCCCCSEECSSSSCEESCHHHHHHHHHHSS
T ss_pred             CCCCCCCCccCCCCCchhCCHHHHHHHHHHhc
Confidence            35778899999999999999999999999997

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=1.3e-07  Score=51.90  Aligned_cols=31  Identities=19%  Similarity=0.268  Sum_probs=28.4

Q ss_pred             ccCCCCCccccc--cccccCChhHHHHHhhhcC
Q 026210           58 TLLATNRFVCEI--CNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        58 ~~~~~~~~~C~~--C~~~f~~~~~L~~H~~~h~   88 (241)
                      .+.+++||+|.+  |++.|....+|..|+++|+
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Ht   35 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHT   35 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            456789999986  9999999999999999997

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.41  E-value=1.6e-07  Score=50.54  Aligned_cols=31  Identities=23%  Similarity=0.402  Sum_probs=29.1

Q ss_pred             ccCCCCCccccccccccCChhHHHHHhhhcC
Q 026210           58 TLLATNRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        58 ~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      +|.++++|.|.+|++.|.....|..|+++|.
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHT   33 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHcc
Confidence            5778899999999999999999999999997

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.40  E-value=1.9e-07  Score=50.23  Aligned_cols=30  Identities=23%  Similarity=0.567  Sum_probs=21.1

Q ss_pred             cccCCceeecccccccccchhhHHHHHHHh
Q 026210          134 RKHGEKKYKCERCSKKYAVQSDWKAHMKTC  163 (241)
Q Consensus       134 ~h~~ek~~~C~~C~k~f~~~~~L~~H~~~~  163 (241)
                      .|.++++|.|.+|++.|.....|..|+++|
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIH   32 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHh
Confidence            355667777777777777777777777763

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.37  E-value=2.4e-07  Score=49.77  Aligned_cols=31  Identities=23%  Similarity=0.520  Sum_probs=28.7

Q ss_pred             ccCCCCCccccccccccCChhHHHHHhhhcC
Q 026210           58 TLLATNRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        58 ~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      .+.++++|.|.+|++.|.....|..|+++|.
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHT   33 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhc
Confidence            4677899999999999999999999999997

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.37  E-value=1.5e-07  Score=51.11  Aligned_cols=32  Identities=16%  Similarity=0.289  Sum_probs=29.5

Q ss_pred             cccCCCCCccccccccccCChhHHHHH-hhhcC
Q 026210           57 KTLLATNRFVCEICNKGFQRDQNLQLH-RRGHN   88 (241)
Q Consensus        57 ~~~~~~~~~~C~~C~~~f~~~~~L~~H-~~~h~   88 (241)
                      ++|.++++|+|..|++.|.....|..| ++.|.
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~   34 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHS   34 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHcc
Confidence            467889999999999999999999999 88886

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.36  E-value=1.5e-07  Score=51.01  Aligned_cols=32  Identities=22%  Similarity=0.403  Sum_probs=29.3

Q ss_pred             cccCCCCCccccccccccCCh-hHHHHHhhhcC
Q 026210           57 KTLLATNRFVCEICNKGFQRD-QNLQLHRRGHN   88 (241)
Q Consensus        57 ~~~~~~~~~~C~~C~~~f~~~-~~L~~H~~~h~   88 (241)
                      ++|.++++|.|.+|++.|... ..|..|+++|.
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~   34 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHE   34 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHH
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcC
Confidence            357788999999999999999 99999999986

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.35  E-value=2e-07  Score=46.73  Aligned_cols=27  Identities=30%  Similarity=0.699  Sum_probs=24.7

Q ss_pred             CCCccccccccccCChhHHHHHhhhcC
Q 026210           62 TNRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        62 ~~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      +++|.|..||+.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            468999999999999999999999874

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.34  E-value=2.4e-07  Score=46.29  Aligned_cols=27  Identities=22%  Similarity=0.491  Sum_probs=24.8

Q ss_pred             CCCccccccccccCChhHHHHHhhhcC
Q 026210           62 TNRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        62 ~~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      +++|.|..||+.|.....|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            468999999999999999999999884

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.34  E-value=2.7e-07  Score=49.61  Aligned_cols=31  Identities=39%  Similarity=0.580  Sum_probs=28.5

Q ss_pred             ccCCCCCccccccccccCChhHHHHHhhhcC
Q 026210           58 TLLATNRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        58 ~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      .+..+++|.|.+|++.|.....|..|+++|.
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHT   33 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhC
Confidence            4567889999999999999999999999997

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.33  E-value=2.2e-07  Score=46.44  Aligned_cols=24  Identities=13%  Similarity=0.318  Sum_probs=12.8

Q ss_pred             cceecC-CCCCcCCcchHHHHHHhc
Q 026210          166 REYKCD-CGTIFSRRDSFITHRAFC  189 (241)
Q Consensus       166 k~~~C~-C~k~f~~~~~L~~H~~~~  189 (241)
                      ++|.|. |++.|...+.|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            455555 555555555555555544

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.32  E-value=2.6e-07  Score=53.49  Aligned_cols=32  Identities=22%  Similarity=0.477  Sum_probs=28.9

Q ss_pred             ccCCCCCccccccccccCChhHHHHHhh-hcCC
Q 026210           58 TLLATNRFVCEICNKGFQRDQNLQLHRR-GHNL   89 (241)
Q Consensus        58 ~~~~~~~~~C~~C~~~f~~~~~L~~H~~-~h~~   89 (241)
                      +|+++++|.|.+|++.|....+|..|++ +|.+
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~   33 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLA   33 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCC
Confidence            4678899999999999999999999999 8973

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.31  E-value=2.1e-07  Score=50.74  Aligned_cols=30  Identities=23%  Similarity=0.680  Sum_probs=27.4

Q ss_pred             cCCCCCcccc--ccccccCChhHHHHHhhhcC
Q 026210           59 LLATNRFVCE--ICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        59 ~~~~~~~~C~--~C~~~f~~~~~L~~H~~~h~   88 (241)
                      |.++++|.|.  .|++.|....+|..|+++|.
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~   32 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhC
Confidence            4578999999  59999999999999999997

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.30  E-value=2.5e-07  Score=46.65  Aligned_cols=25  Identities=36%  Similarity=0.720  Sum_probs=14.8

Q ss_pred             cceecC-CCCCcCCcchHHHHHHhcc
Q 026210          166 REYKCD-CGTIFSRRDSFITHRAFCD  190 (241)
Q Consensus       166 k~~~C~-C~k~f~~~~~L~~H~~~~~  190 (241)
                      ++|.|. |++.|...+.|..|+++|.
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcC
Confidence            456666 6666666666666665553

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.30  E-value=4.9e-07  Score=49.00  Aligned_cols=32  Identities=28%  Similarity=0.508  Sum_probs=25.0

Q ss_pred             cccCCceeeccc--ccccccchhhHHHHHHH-hCC
Q 026210          134 RKHGEKKYKCER--CSKKYAVQSDWKAHMKT-CGT  165 (241)
Q Consensus       134 ~h~~ek~~~C~~--C~k~f~~~~~L~~H~~~-~~~  165 (241)
                      .|+++++|.|.+  |++.|...+.|..|+++ +++
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            367788888874  88888888888888887 354

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.30  E-value=1.7e-07  Score=47.02  Aligned_cols=24  Identities=21%  Similarity=0.326  Sum_probs=12.1

Q ss_pred             cceecC-CCCCcCCcchHHHHHHhc
Q 026210          166 REYKCD-CGTIFSRRDSFITHRAFC  189 (241)
Q Consensus       166 k~~~C~-C~k~f~~~~~L~~H~~~~  189 (241)
                      ++|.|. |++.|...+.|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            445555 555555555555555443

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.26  E-value=5.5e-08  Score=51.12  Aligned_cols=26  Identities=31%  Similarity=0.556  Sum_probs=24.7

Q ss_pred             CCccccccccccCChhHHHHHhhhcC
Q 026210           63 NRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        63 ~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      ++|.|.+|++.|....+|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~   26 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAF   26 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHc
Confidence            47999999999999999999999998

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.25  E-value=4.8e-07  Score=48.89  Aligned_cols=27  Identities=33%  Similarity=0.711  Sum_probs=25.0

Q ss_pred             ccCCCCCccccccccccCChhHHHHHh
Q 026210           58 TLLATNRFVCEICNKGFQRDQNLQLHR   84 (241)
Q Consensus        58 ~~~~~~~~~C~~C~~~f~~~~~L~~H~   84 (241)
                      .+.++++|+|.+||+.|...++|.+|+
T Consensus         2 ~~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            2 SLLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CSSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCCccCeECCCCCCccCCHhHccCcC
Confidence            457899999999999999999999997

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.22  E-value=6.2e-07  Score=45.10  Aligned_cols=27  Identities=26%  Similarity=0.673  Sum_probs=25.0

Q ss_pred             CCCccccccccccCChhHHHHHhhhcC
Q 026210           62 TNRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        62 ~~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      +++|.|..|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            468999999999999999999999885

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.20  E-value=8.5e-07  Score=45.16  Aligned_cols=27  Identities=19%  Similarity=0.550  Sum_probs=25.3

Q ss_pred             CCCccccccccccCChhHHHHHhhhcC
Q 026210           62 TNRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        62 ~~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      +++|.|..|++.|.....|..|+++|.
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~   27 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHD   27 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhc
Confidence            468999999999999999999999997

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.49  E-value=2.1e-07  Score=46.11  Aligned_cols=24  Identities=25%  Similarity=0.689  Sum_probs=14.2

Q ss_pred             cceecC-CCCCcCCcchHHHHHHhc
Q 026210          166 REYKCD-CGTIFSRRDSFITHRAFC  189 (241)
Q Consensus       166 k~~~C~-C~k~f~~~~~L~~H~~~~  189 (241)
                      |+|.|. |++.|...+.|..|+++|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            355666 666666666666666554

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.16  E-value=8.6e-07  Score=44.87  Aligned_cols=26  Identities=38%  Similarity=0.701  Sum_probs=24.5

Q ss_pred             CCccccccccccCChhHHHHHhhhcC
Q 026210           63 NRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        63 ~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      ++|.|..|++.|.....|..|+++|.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHE   26 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGG
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhc
Confidence            57999999999999999999999996

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.16  E-value=1e-06  Score=44.81  Aligned_cols=24  Identities=38%  Similarity=0.740  Sum_probs=10.7

Q ss_pred             cceecC-CCCCcCCcchHHHHHHhc
Q 026210          166 REYKCD-CGTIFSRRDSFITHRAFC  189 (241)
Q Consensus       166 k~~~C~-C~k~f~~~~~L~~H~~~~  189 (241)
                      ++|.|. |++.|.....|..|+++|
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h   26 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETH   26 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTT
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHh
Confidence            344444 444444444444444444

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.16  E-value=8.1e-07  Score=44.97  Aligned_cols=26  Identities=23%  Similarity=0.548  Sum_probs=17.7

Q ss_pred             cceecC-CCCCcCCcchHHHHHHhccC
Q 026210          166 REYKCD-CGTIFSRRDSFITHRAFCDA  191 (241)
Q Consensus       166 k~~~C~-C~k~f~~~~~L~~H~~~~~~  191 (241)
                      ++|.|. |++.|...+.|..|+++|.+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHEN   27 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGS
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcC
Confidence            466777 77777777777777766653

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.15  E-value=2.5e-07  Score=48.46  Aligned_cols=30  Identities=13%  Similarity=0.307  Sum_probs=21.2

Q ss_pred             cccCCCCCcccCCCCCcCCChhhHhhhhccccCCcee
Q 026210          105 VYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKY  141 (241)
Q Consensus       105 ~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~  141 (241)
                      +|.|.+|       ++.|.....|..|+++|+++++|
T Consensus         2 p~~C~~C-------~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            2 AFACPAC-------PKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CSSSSSS-------CTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCC-------CcccCCHHHHHHHHHHHccCCCC
Confidence            5667777       77777777777777777777665

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.15  E-value=1.2e-06  Score=44.27  Aligned_cols=26  Identities=42%  Similarity=1.003  Sum_probs=24.5

Q ss_pred             CCccccccccccCChhHHHHHhhhcC
Q 026210           63 NRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        63 ~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      ++|.|..|++.|.....|..|+++|.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhc
Confidence            47999999999999999999999997

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.44  E-value=2.7e-07  Score=45.67  Aligned_cols=26  Identities=38%  Similarity=0.763  Sum_probs=23.8

Q ss_pred             CCccccccccccCChhHHHHHhhhcC
Q 026210           63 NRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        63 ~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      ++|.|..||+.|.....|..|+++|.
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            47999999999999999999999873

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.12  E-value=1.3e-06  Score=44.01  Aligned_cols=26  Identities=27%  Similarity=0.492  Sum_probs=18.8

Q ss_pred             cceecC-CCCCcCCcchHHHHHHhccC
Q 026210          166 REYKCD-CGTIFSRRDSFITHRAFCDA  191 (241)
Q Consensus       166 k~~~C~-C~k~f~~~~~L~~H~~~~~~  191 (241)
                      ++|.|. |++.|.....|..|+++|.+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIA   27 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHS
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhcc
Confidence            467777 77777777777777777653

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.10  E-value=2.4e-06  Score=44.38  Aligned_cols=27  Identities=30%  Similarity=0.800  Sum_probs=25.2

Q ss_pred             CCCcccc--ccccccCChhHHHHHhhhcC
Q 026210           62 TNRFVCE--ICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        62 ~~~~~C~--~C~~~f~~~~~L~~H~~~h~   88 (241)
                      +++|.|.  .|++.|.....|..|+++|+
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~   29 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHcc
Confidence            4689999  89999999999999999997

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.10  E-value=1.7e-06  Score=43.94  Aligned_cols=24  Identities=21%  Similarity=0.389  Sum_probs=11.3

Q ss_pred             ceecC-CCCCcCCcchHHHHHHhcc
Q 026210          167 EYKCD-CGTIFSRRDSFITHRAFCD  190 (241)
Q Consensus       167 ~~~C~-C~k~f~~~~~L~~H~~~~~  190 (241)
                      +|.|. |++.|...+.|..|+++|+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~   26 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHc
Confidence            34444 4444444444444444443

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.09  E-value=2e-06  Score=43.37  Aligned_cols=23  Identities=22%  Similarity=0.626  Sum_probs=10.3

Q ss_pred             ceecC-CCCCcCCcchHHHHHHhc
Q 026210          167 EYKCD-CGTIFSRRDSFITHRAFC  189 (241)
Q Consensus       167 ~~~C~-C~k~f~~~~~L~~H~~~~  189 (241)
                      +|.|. |++.|.....|..|+++|
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h   25 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSH   25 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHHHh
Confidence            34444 444444444444444443

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.09  E-value=1.7e-06  Score=43.92  Aligned_cols=26  Identities=19%  Similarity=0.478  Sum_probs=24.5

Q ss_pred             CCccccccccccCChhHHHHHhhhcC
Q 026210           63 NRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        63 ~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      ++|.|.+|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~   26 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHc
Confidence            47999999999999999999999987

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.08  E-value=1.3e-06  Score=47.32  Aligned_cols=30  Identities=27%  Similarity=0.551  Sum_probs=27.4

Q ss_pred             cCCCCCccccc--cccccCChhHHHHHhhhcC
Q 026210           59 LLATNRFVCEI--CNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        59 ~~~~~~~~C~~--C~~~f~~~~~L~~H~~~h~   88 (241)
                      +.++++|.|.+  |++.|.....|..|+++|.
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~   34 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHT   34 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            56789999994  9999999999999999986

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.08  E-value=1.4e-06  Score=43.21  Aligned_cols=24  Identities=25%  Similarity=0.677  Sum_probs=16.0

Q ss_pred             ceecC-CCCCcCCcchHHHHHHhcc
Q 026210          167 EYKCD-CGTIFSRRDSFITHRAFCD  190 (241)
Q Consensus       167 ~~~C~-C~k~f~~~~~L~~H~~~~~  190 (241)
                      +|.|. |++.|.....|..|+++|.
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcC
Confidence            46676 7777777777777776664

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.07  E-value=2.1e-06  Score=42.53  Aligned_cols=25  Identities=28%  Similarity=0.748  Sum_probs=23.1

Q ss_pred             CccccccccccCChhHHHHHhhhcC
Q 026210           64 RFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        64 ~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      +|.|.+|++.|.....|..|+++|+
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcC
Confidence            5899999999999999999999986

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.07  E-value=2.5e-06  Score=43.96  Aligned_cols=26  Identities=42%  Similarity=0.898  Sum_probs=24.4

Q ss_pred             CCcccc--ccccccCChhHHHHHhhhcC
Q 026210           63 NRFVCE--ICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        63 ~~~~C~--~C~~~f~~~~~L~~H~~~h~   88 (241)
                      ++|.|.  .||+.|.....|..|+++|+
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~   28 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhc
Confidence            479998  99999999999999999997

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.34  E-value=4.8e-07  Score=46.23  Aligned_cols=25  Identities=20%  Similarity=0.474  Sum_probs=14.6

Q ss_pred             cceecC-CCCCcCCcchHHHHHHhcc
Q 026210          166 REYKCD-CGTIFSRRDSFITHRAFCD  190 (241)
Q Consensus       166 k~~~C~-C~k~f~~~~~L~~H~~~~~  190 (241)
                      ++|.|. |++.|.....|..|+++|.
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHT   27 (30)
Confidence            455565 6666666666666655554

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.06  E-value=2.2e-06  Score=43.15  Aligned_cols=24  Identities=42%  Similarity=0.779  Sum_probs=17.3

Q ss_pred             ceeecccccccccchhhHHHHHHH
Q 026210          139 KKYKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       139 k~~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      ++|.|..|++.|.....|..|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~   24 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKI   24 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHH
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHH
Confidence            457777777777777777777776

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.06  E-value=2.8e-06  Score=42.79  Aligned_cols=23  Identities=26%  Similarity=0.765  Sum_probs=11.6

Q ss_pred             eeecccccccccchhhHHHHHHH
Q 026210          140 KYKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       140 ~~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      +|.|.+|++.|.....|..|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRI   24 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHHH
Confidence            44555555555555555555444

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.05  E-value=1.3e-06  Score=44.09  Aligned_cols=26  Identities=35%  Similarity=0.608  Sum_probs=24.4

Q ss_pred             CCccccccccccCChhHHHHHhhhcC
Q 026210           63 NRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        63 ~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      ++|.|.+|++.|.....|..|+++|.
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHS   26 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHH
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhc
Confidence            47999999999999999999999986

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.31  E-value=5.7e-07  Score=45.65  Aligned_cols=25  Identities=28%  Similarity=0.632  Sum_probs=17.0

Q ss_pred             cceecC-CCCCcCCcchHHHHHHhcc
Q 026210          166 REYKCD-CGTIFSRRDSFITHRAFCD  190 (241)
Q Consensus       166 k~~~C~-C~k~f~~~~~L~~H~~~~~  190 (241)
                      ++|.|. |++.|...+.|..|+++|.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHT   26 (29)
Confidence            456676 7777777777777776665

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.31  E-value=5.8e-07  Score=45.61  Aligned_cols=26  Identities=31%  Similarity=0.638  Sum_probs=24.4

Q ss_pred             CCccccccccccCChhHHHHHhhhcC
Q 026210           63 NRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        63 ~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      ++|.|.+|++.|....+|..|+++|.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHT   26 (29)
Confidence            47999999999999999999999987

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.02  E-value=2.9e-06  Score=44.03  Aligned_cols=24  Identities=29%  Similarity=0.726  Sum_probs=11.9

Q ss_pred             ceeecc--cccccccchhhHHHHHHH
Q 026210          139 KKYKCE--RCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       139 k~~~C~--~C~k~f~~~~~L~~H~~~  162 (241)
                      ++|.|.  .|++.|.....|..|+++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~   27 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGG
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHH
Confidence            344554  455555555555555444

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.01  E-value=1.5e-06  Score=49.89  Aligned_cols=34  Identities=26%  Similarity=0.431  Sum_probs=30.4

Q ss_pred             CccccCCCCCcccc--ccccccCChhHHHHHhhhcC
Q 026210           55 SPKTLLATNRFVCE--ICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        55 ~~~~~~~~~~~~C~--~C~~~f~~~~~L~~H~~~h~   88 (241)
                      +...|.++++|.|.  .|++.|....+|..|+++|.
T Consensus         9 ~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~   44 (47)
T 1ncs_A            9 KYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             GSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             HHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHcc
Confidence            34568899999996  79999999999999999997

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.26  E-value=7.7e-07  Score=45.41  Aligned_cols=24  Identities=25%  Similarity=0.672  Sum_probs=16.9

Q ss_pred             ceeecccccccccchhhHHHHHHH
Q 026210          139 KKYKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       139 k~~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      ++|.|..|++.|.....|..|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRI   25 (30)
Confidence            567777777777777777777666

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.98  E-value=4.5e-06  Score=42.40  Aligned_cols=26  Identities=31%  Similarity=0.759  Sum_probs=23.9

Q ss_pred             CCccccccccccCChhHHHHH-hhhcC
Q 026210           63 NRFVCEICNKGFQRDQNLQLH-RRGHN   88 (241)
Q Consensus        63 ~~~~C~~C~~~f~~~~~L~~H-~~~h~   88 (241)
                      ++|.|..|++.|.....|..| +++|.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~   27 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHS   27 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHcc
Confidence            479999999999999999999 78887

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.85  E-value=7.6e-06  Score=41.09  Aligned_cols=26  Identities=27%  Similarity=0.689  Sum_probs=24.1

Q ss_pred             CCcccc--ccccccCChhHHHHHhhhcC
Q 026210           63 NRFVCE--ICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        63 ~~~~C~--~C~~~f~~~~~L~~H~~~h~   88 (241)
                      ++|.|.  .|++.|.....|..|+++|.
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            478999  99999999999999999985

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.85  E-value=1e-05  Score=41.54  Aligned_cols=23  Identities=22%  Similarity=0.690  Sum_probs=12.1

Q ss_pred             eeecc--cccccccchhhHHHHHHH
Q 026210          140 KYKCE--RCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       140 ~~~C~--~C~k~f~~~~~L~~H~~~  162 (241)
                      +|.|.  .||+.|.....|..|+++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~   26 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRT   26 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTT
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHH
Confidence            45554  455555555555555554

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.77  E-value=3.8e-05  Score=47.12  Aligned_cols=44  Identities=16%  Similarity=0.320  Sum_probs=21.4

Q ss_pred             ccccccchhhHHHHHHH-h-CCc------ceecC---CCCCcCCcchHHHHHHhc
Q 026210          146 CSKKYAVQSDWKAHMKT-C-GTR------EYKCD---CGTIFSRRDSFITHRAFC  189 (241)
Q Consensus       146 C~k~f~~~~~L~~H~~~-~-~~k------~~~C~---C~k~f~~~~~L~~H~~~~  189 (241)
                      |++.|.+...|..|+.. | +.+      .|.|.   |++.+.....|..|+++.
T Consensus         9 C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            44444444444444432 3 111      45552   555555555555555543

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.74  E-value=3.6e-05  Score=47.23  Aligned_cols=52  Identities=13%  Similarity=0.348  Sum_probs=44.4

Q ss_pred             ccCCCCCcccCCCCCcCCChhhHhhhh-ccccCCc------eeecc--cccccccchhhHHHHHHH
Q 026210          106 YVCPESTCVHHNPARALGDLTGIKKHF-SRKHGEK------KYKCE--RCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       106 ~~C~~C~c~~~~~~~~f~~~~~l~~H~-~~h~~ek------~~~C~--~C~k~f~~~~~L~~H~~~  162 (241)
                      |.|.+-+|     ++.|.....|..|+ ..|.+.+      .|.|.  .|++.+.....|..|++.
T Consensus         2 l~C~W~~C-----~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~   62 (64)
T 1zw8_A            2 LKCKWKEC-----PESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINA   62 (64)
T ss_dssp             CCCCCTTC-----CCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHH
T ss_pred             CeEeeCCC-----CCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccc
Confidence            45777555     99999999999998 5787765      79996  799999999999999987

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.71  E-value=1.7e-05  Score=39.69  Aligned_cols=25  Identities=20%  Similarity=0.521  Sum_probs=20.0

Q ss_pred             ceeecc--cccccccchhhHHHHHHHh
Q 026210          139 KKYKCE--RCSKKYAVQSDWKAHMKTC  163 (241)
Q Consensus       139 k~~~C~--~C~k~f~~~~~L~~H~~~~  163 (241)
                      ++|.|.  .|++.|.....|..|+++|
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H   27 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIH   27 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGG
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHh
Confidence            467888  8888888888888888774

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.69  E-value=2.3e-05  Score=39.58  Aligned_cols=20  Identities=20%  Similarity=0.575  Sum_probs=10.1

Q ss_pred             eeecccccccccchhhHHHH
Q 026210          140 KYKCERCSKKYAVQSDWKAH  159 (241)
Q Consensus       140 ~~~C~~C~k~f~~~~~L~~H  159 (241)
                      +|.|..|++.|.....|..|
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H   21 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRH   21 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHH
T ss_pred             CcCCcccCcccCChHHHHHH
Confidence            34555555555555555555

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.15  E-value=0.00016  Score=50.82  Aligned_cols=83  Identities=13%  Similarity=0.231  Sum_probs=51.7

Q ss_pred             CCccccccccccCChhHHHHHh--hhcCCCchhhhcchhhhcCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCce
Q 026210           63 NRFVCEICNKGFQRDQNLQLHR--RGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKK  140 (241)
Q Consensus        63 ~~~~C~~C~~~f~~~~~L~~H~--~~h~~~~~~~~~~~~~~~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~  140 (241)
                      +++.|.+|...|.+...+..|.  +.|...            .+.|.+. ++....-.++.|...    .+...+.+.+.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~------------v~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~   93 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANK------------VRRYMAI-NQGEDSVPAKKFKAA----PAEISDGEDRS   93 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHH------------HHHHHHH-TTCCCCCSCCCCSCC----SSCCSSCCCTT
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHH------------HHHHhcc-cCcccCCCCCccCCC----ccccccCCCCC
Confidence            5689999999999999999998  555310            0112211 100000002233221    13344566778


Q ss_pred             eecccccccccchhhHHHHHHH
Q 026210          141 YKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       141 ~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      |.|..|++.|.+...|..|...
T Consensus        94 ~~C~~C~~~f~s~~~~~~H~~g  115 (127)
T 1zu1_A           94 KCCPVCNMTFSSPVVAESHYIG  115 (127)
T ss_dssp             TEETTTTEECSSHHHHHHHHTS
T ss_pred             eEcCCCCCEeCCHHHHHHHHCC
Confidence            8899999999999999988864

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.10  E-value=0.00012  Score=50.72  Aligned_cols=32  Identities=16%  Similarity=0.386  Sum_probs=27.0

Q ss_pred             hhccccCCceeecccccccccchhhHHHHHHH
Q 026210          131 HFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       131 H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      +-..|+|+++|.|..|++.|.+...|..|+++
T Consensus        41 ~ded~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           41 FDPDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SCSSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             ccccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            33568889999999999999999999999876

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.90  E-value=0.00032  Score=48.57  Aligned_cols=27  Identities=22%  Similarity=0.277  Sum_probs=25.1

Q ss_pred             hCCcceecC-CCCCcCCcchHHHHHHhc
Q 026210          163 CGTREYKCD-CGTIFSRRDSFITHRAFC  189 (241)
Q Consensus       163 ~~~k~~~C~-C~k~f~~~~~L~~H~~~~  189 (241)
                      .|+++|.|. |++.|.+.+.|..|+++.
T Consensus        46 tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           46 PGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             GGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             CCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            588999999 999999999999998875

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.55  E-value=0.0014  Score=45.99  Aligned_cols=75  Identities=16%  Similarity=0.191  Sum_probs=48.2

Q ss_pred             CccccCCCCCcccCCCCCcCCChhhHhhhh--ccccCC-ceeecccc------cccccchhhHHHHHHH-hCCcceecC-
Q 026210          103 KKVYVCPESTCVHHNPARALGDLTGIKKHF--SRKHGE-KKYKCERC------SKKYAVQSDWKAHMKT-CGTREYKCD-  171 (241)
Q Consensus       103 ~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~--~~h~~e-k~~~C~~C------~k~f~~~~~L~~H~~~-~~~k~~~C~-  171 (241)
                      .+++.|..|       ...|.....+..|.  +.|... +.|.+..+      ++.|....    +... .+.+.|.|. 
T Consensus        30 ~~~~~C~~C-------~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~C~~   98 (127)
T 1zu1_A           30 FSDTQCKVC-------SAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEISDGEDRSKCCPV   98 (127)
T ss_dssp             BCSSEETTT-------TEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCTTTEETT
T ss_pred             CCCCcCcCC-------CCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----cccccCCCCCeEcCC
Confidence            356788888       88888888888887  455432 33433111      22222111    1112 345789999 


Q ss_pred             CCCCcCCcchHHHHHHh
Q 026210          172 CGTIFSRRDSFITHRAF  188 (241)
Q Consensus       172 C~k~f~~~~~L~~H~~~  188 (241)
                      |++.|.....|..|...
T Consensus        99 C~~~f~s~~~~~~H~~g  115 (127)
T 1zu1_A           99 CNMTFSSPVVAESHYIG  115 (127)
T ss_dssp             TTEECSSHHHHHHHHTS
T ss_pred             CCCEeCCHHHHHHHHCC
Confidence            99999999999999864

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.38  E-value=0.01  Score=43.65  Aligned_cols=83  Identities=19%  Similarity=0.479  Sum_probs=58.3

Q ss_pred             CccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHH-hCCcceecC-CCCCcCCcc
Q 026210          103 KKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRD  180 (241)
Q Consensus       103 ~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~~~  180 (241)
                      .....|+.-||     ...+ ....|..|+ ..-..+++.|..|+..+ .+..|..|+.. ...+...|. |+..|.. .
T Consensus        80 ~l~v~C~n~GC-----~~~~-~~~~l~~H~-~~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~  150 (170)
T 3hcs_A           80 SLMVKCPNEGC-----LHKM-ELRHLEDHQ-AHCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-E  150 (170)
T ss_dssp             TSEEECCSTTC-----CCEE-EGGGHHHHH-TTCTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-G
T ss_pred             hcccCCCCCCC-----Ccee-cHhHHHHHH-hcCCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-H
Confidence            34456754344     4443 345677776 34456788999999988 56689999976 788999999 9998855 5


Q ss_pred             hHHHHHHhccCchh
Q 026210          181 SFITHRAFCDALAE  194 (241)
Q Consensus       181 ~L~~H~~~~~~~~~  194 (241)
                      .|..|..++.+...
T Consensus       151 ~l~~H~~~~~~~~~  164 (170)
T 3hcs_A          151 DKEIHDQNCPLALE  164 (170)
T ss_dssp             GHHHHHTTCCC---
T ss_pred             HHHhHHHhCcChhh
Confidence            78999988876543

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.37  E-value=0.0018  Score=36.05  Aligned_cols=24  Identities=21%  Similarity=0.624  Sum_probs=14.0

Q ss_pred             cceecC-CCCCcCCcchHHHHHHhc
Q 026210          166 REYKCD-CGTIFSRRDSFITHRAFC  189 (241)
Q Consensus       166 k~~~C~-C~k~f~~~~~L~~H~~~~  189 (241)
                      -.|.|+ |+..|+....|+.||+..
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmkyc   35 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYC   35 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhhc
Confidence            345566 666666666666666543

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.83  E-value=0.006  Score=34.00  Aligned_cols=24  Identities=25%  Similarity=0.591  Sum_probs=19.9

Q ss_pred             ceeecccccccccchhhHHHHHHH
Q 026210          139 KKYKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       139 k~~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      -.|.|+.|+..|.....|+.||+.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            458888888888888888888885

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=93.45  E-value=0.02  Score=35.85  Aligned_cols=44  Identities=20%  Similarity=0.517  Sum_probs=31.2

Q ss_pred             eeecccccccccchhhHHHHHHH-hCCcceecC-CCCCcCCcchHHHH
Q 026210          140 KYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITH  185 (241)
Q Consensus       140 ~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~~~~L~~H  185 (241)
                      .|.|+.||..+. +..|..|... .+...|.|. |++.|.. ..++.|
T Consensus        10 ~F~C~~Cgd~lK-K~kv~~H~~~Cr~~~~~SCIDC~~~F~~-~~y~~H   55 (79)
T 1wjv_A           10 FFTCNACGESVK-KIQVEKHVSNCRNCECLSCIDCGKDFWG-DDYKSH   55 (79)
T ss_dssp             EEEESSSCCEEE-TTHHHHHHHHCTTCCEEEETTTTEEEEG-GGTTTC
T ss_pred             EEEcCCCCCeee-cccchhHHhhCCCCCcEEecccCCeeCC-CCEeCE
Confidence            478888886654 4577888766 455678888 8888874 445555

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=93.43  E-value=0.091  Score=38.42  Aligned_cols=57  Identities=19%  Similarity=0.338  Sum_probs=42.6

Q ss_pred             CccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHH-hCCcce
Q 026210          103 KKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREY  168 (241)
Q Consensus       103 ~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~  168 (241)
                      ..+..|+.|       +..+ ....|..|+...-..+...|..|+..|.. ..|..|... .|+.++
T Consensus       108 ~~~v~C~~C-------~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          108 FALMDCPQC-------QRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIHDQNCPLALEH  165 (170)
T ss_dssp             TSEEECTTT-------CCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHHHTTCCC----
T ss_pred             ceeeECCCC-------ChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-HHHHhHHHhCcChhhh
Confidence            356678877       7666 56778999988888899999999998866 478999988 566543

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=91.36  E-value=0.085  Score=27.52  Aligned_cols=23  Identities=22%  Similarity=0.676  Sum_probs=15.5

Q ss_pred             cceecC-CCCCcCCcchHHHHHHh
Q 026210          166 REYKCD-CGTIFSRRDSFITHRAF  188 (241)
Q Consensus       166 k~~~C~-C~k~f~~~~~L~~H~~~  188 (241)
                      ..+.|. |+.+|.+...+..|++.
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHKk~   30 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHKQF   30 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHHHH
T ss_pred             CcCeeccccceehhhHHHhhhhee
Confidence            356677 77777777777777654

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=90.93  E-value=0.13  Score=26.67  Aligned_cols=22  Identities=18%  Similarity=0.525  Sum_probs=10.9

Q ss_pred             eecccccccccchhhHHHHHHH
Q 026210          141 YKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       141 ~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      |.|++|.+.|.....|..|...
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye~   27 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYEA   27 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHHH
T ss_pred             cCCcHHHHHcCCHHHHHHHHHh
Confidence            4455555555555555555443

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.93  E-value=0.22  Score=31.10  Aligned_cols=20  Identities=10%  Similarity=-0.016  Sum_probs=14.3

Q ss_pred             CcchHHHHHHhccCchhhhc
Q 026210          178 RRDSFITHRAFCDALAEESA  197 (241)
Q Consensus       178 ~~~~L~~H~~~~~~~~~~~~  197 (241)
                      .-+.|.+|++.+|....+..
T Consensus        47 GTS~L~rHL~~~H~~e~~~~   66 (76)
T 2djr_A           47 GTTALWKHLKSMHREELEKS   66 (76)
T ss_dssp             SSCHHHHHHHHTTHHHHHHT
T ss_pred             chHHHHHHHHHHCHHHHHhc
Confidence            34589999999887655443

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=90.58  E-value=0.2  Score=26.00  Aligned_cols=24  Identities=17%  Similarity=0.434  Sum_probs=13.6

Q ss_pred             ceecC-CCCCcCCcchHHHHHHhcc
Q 026210          167 EYKCD-CGTIFSRRDSFITHRAFCD  190 (241)
Q Consensus       167 ~~~C~-C~k~f~~~~~L~~H~~~~~  190 (241)
                      .|.|. |.+.|.....|..|....|
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H   29 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVH   29 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhcc
Confidence            04565 6666666666666655544

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=89.25  E-value=0.035  Score=34.76  Aligned_cols=46  Identities=35%  Similarity=0.794  Sum_probs=21.5

Q ss_pred             ceeec-ccccccccchhhHHHHHHH-hCCcceecC-CCCCcCCcchHHHHH
Q 026210          139 KKYKC-ERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITHR  186 (241)
Q Consensus       139 k~~~C-~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~~~~L~~H~  186 (241)
                      .+..| ..|+..+.+ ..|..|+.. ...+...|. |+..|... .|..|.
T Consensus        15 ~~v~C~~~C~~~v~r-~~l~~H~~~~C~~r~v~C~~C~~~~~~~-~l~~H~   63 (76)
T 2yuc_A           15 NVIPCPNRCPMKLSR-RDLPAHLQHDCPKRRLKCEFCGCDFSGE-AYESHE   63 (76)
T ss_dssp             SCCBCTTCCSCBCCS-SSSTTTTTTSCTTSCCCCSSSCCCCCHH-HHHHTT
T ss_pred             cccCCCccccHHhhH-hHHHhhCHhhCCCcceECCCCCCccCHH-HHHHHH
Confidence            34445 345554443 344555543 344555555 55555432 344444

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=88.52  E-value=0.28  Score=31.38  Aligned_cols=29  Identities=17%  Similarity=0.400  Sum_probs=18.9

Q ss_pred             CceeecccccccccchhhHHHHHHH-hCCccee
Q 026210          138 EKKYKCERCSKKYAVQSDWKAHMKT-CGTREYK  169 (241)
Q Consensus       138 ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~  169 (241)
                      +.-..|.+||+.|..   |.+|+.+ ||..+..
T Consensus        19 ~d~iiClecGK~fK~---LkRHL~~~hgltpee   48 (87)
T 2jsp_A           19 DDHIVCLECGGSFKS---LKRHLTTHHSMTPEE   48 (87)
T ss_dssp             SSCEECTBTCCEESB---HHHHHHHTTCSCHHH
T ss_pred             CCceEecccchhhHH---HHHHHHHccCCCHHH
Confidence            344677777777763   6677777 6665544

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=87.38  E-value=0.55  Score=24.47  Aligned_cols=25  Identities=16%  Similarity=0.353  Sum_probs=21.9

Q ss_pred             CCCccccccccccCChhHHHHHhhh
Q 026210           62 TNRFVCEICNKGFQRDQNLQLHRRG   86 (241)
Q Consensus        62 ~~~~~C~~C~~~f~~~~~L~~H~~~   86 (241)
                      ...+.|..|+-.|....++..|.+-
T Consensus         6 ~~~~~C~~C~IsF~~l~ty~aHKk~   30 (36)
T 1fu9_A            6 VMKKYCSTCDISFNYVKTYLAHKQF   30 (36)
T ss_dssp             CCCSEETTTTEECSSHHHHHHHHHH
T ss_pred             cCcCeeccccceehhhHHHhhhhee
Confidence            4578899999999999999999764

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=86.20  E-value=0.5  Score=30.21  Aligned_cols=26  Identities=27%  Similarity=0.607  Sum_probs=21.1

Q ss_pred             CCCCCccccccccccCChhHHHHHhhhcC
Q 026210           60 LATNRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        60 ~~~~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      ...+...|-+||+.|..   |.+|+..|+
T Consensus        17 i~~d~iiClecGK~fK~---LkRHL~~~h   42 (87)
T 2jsp_A           17 VQDDHIVCLECGGSFKS---LKRHLTTHH   42 (87)
T ss_dssp             BCSSCEECTBTCCEESB---HHHHHHHTT
T ss_pred             cCCCceEecccchhhHH---HHHHHHHcc
Confidence            34556789999999984   889999965

>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription; 2.30A {Thermococcus kodakarensis} SCOP: c.52.4.1

Probab=84.75  E-value=0.47  Score=34.54  Aligned_cols=40  Identities=30%  Similarity=0.686  Sum_probs=28.1

Q ss_pred             hHhhhhcccc--CC-----ceeecccccccccchhhHHHHHHHhCCcc
Q 026210          127 GIKKHFSRKH--GE-----KKYKCERCSKKYAVQSDWKAHMKTCGTRE  167 (241)
Q Consensus       127 ~l~~H~~~h~--~e-----k~~~C~~C~k~f~~~~~L~~H~~~~~~k~  167 (241)
                      .|..|++...  |.     .-|+|..||| +..-.+|.+|++.||++.
T Consensus       134 rlieHlK~~~~~GqDyvFWQFYKCe~CgK-YvDId~~~~Hlk~Hg~~v  180 (226)
T 2czr_A          134 ALVNHIKNNALAGQDYIFWQFYKCEECGK-YVDIENLEAHLREHGIKL  180 (226)
T ss_dssp             HHHHHHHTTCCBTTTEEEEEEEECTTTCC-EEEGGGHHHHHHTTTCCG
T ss_pred             HHHHHHHhccccCcceEEEEEEehhhcCc-eecHHHHHHHHHHcCcch
Confidence            3666665432  22     2489999996 466789999999987654

>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription; 2.30A {Thermococcus kodakarensis} SCOP: c.52.4.1

Probab=83.38  E-value=0.38  Score=35.05  Aligned_cols=24  Identities=38%  Similarity=0.713  Sum_probs=21.1

Q ss_pred             CccccccccccCChhHHHHHhhhcC
Q 026210           64 RFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        64 ~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      -|+|..||+ +-+..+|..|++.|.
T Consensus       154 FYKCe~CgK-YvDId~~~~Hlk~Hg  177 (226)
T 2czr_A          154 FYKCEECGK-YVDIENLEAHLREHG  177 (226)
T ss_dssp             EEECTTTCC-EEEGGGHHHHHHTTT
T ss_pred             EEehhhcCc-eecHHHHHHHHHHcC
Confidence            489999998 667889999999995

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=83.18  E-value=0.6  Score=30.95  Aligned_cols=12  Identities=25%  Similarity=0.791  Sum_probs=8.2

Q ss_pred             ceeecccccccc
Q 026210          139 KKYKCERCSKKY  150 (241)
Q Consensus       139 k~~~C~~C~k~f  150 (241)
                      .+|+|..||..|
T Consensus        66 ~p~~C~~CG~~F   77 (105)
T 2gmg_A           66 KPAQCRKCGFVF   77 (105)
T ss_dssp             CCCBBTTTCCBC
T ss_pred             ECcChhhCcCee
Confidence            456777777777

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=82.93  E-value=0.86  Score=22.90  Aligned_cols=21  Identities=29%  Similarity=0.668  Sum_probs=15.2

Q ss_pred             ecccccccccchhhHHHHHHH
Q 026210          142 KCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       142 ~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      .|..|.+.|..-.+|..|++.
T Consensus        11 hcrfckkkysdvknlikhire   31 (37)
T 2elu_A           11 HCRFCKKKYSDVKNLIKHIRD   31 (37)
T ss_dssp             EETTTTEECSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            467777777777777777766

>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}

Probab=80.05  E-value=1.3  Score=23.63  Aligned_cols=24  Identities=29%  Similarity=0.528  Sum_probs=14.9

Q ss_pred             ceeecccccccccchhhHHHHHHHh
Q 026210          139 KKYKCERCSKKYAVQSDWKAHMKTC  163 (241)
Q Consensus       139 k~~~C~~C~k~f~~~~~L~~H~~~~  163 (241)
                      ..|.|..|++.|.. ..+..|.-.|
T Consensus         8 ~~~~C~~C~~~i~~-~~~~EH~D~H   31 (39)
T 2i5o_A            8 DQVPCEKCGSLVPV-WDMPEHMDYH   31 (39)
T ss_dssp             CEEECTTTCCEEEG-GGHHHHHHHH
T ss_pred             CCcccccccCcCCc-ccccchhhHH
Confidence            45677777777776 4456665443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	241
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	3e-05
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	1e-04
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	3e-04
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	5e-04
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	6e-04
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	6e-04

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 3e-05
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 138 EKKYKCERCSKKYAVQSDWKAHMKTCGT-REYKCD-CGTIFSRRDSFITHR 186
           +K Y C+ C K +  +S    HM      R Y C  CG  F  +   + H 
Sbjct: 1   DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 50

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (85), Expect = 1e-04
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 138 EKKYKCERCSKKYAVQSDWKAHMKTCGTRE--YKCD 171
            K Y C+ C K ++       H+K   T E  +KC 
Sbjct: 3   GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (82), Expect = 3e-04
 Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 134 RKH-GEKKYKCERCSKKYAVQSDWKAHMKTCGTRE 167
           R H GEK Y+C  C  ++      K H+    T  
Sbjct: 1   RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (80), Expect = 5e-04
 Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 1/30 (3%)

Query: 134 RKH-GEKKYKCERCSKKYAVQSDWKAHMKT 162
           R H GEK Y C  C K +  +     H K 
Sbjct: 1   RTHTGEKPYACSHCDKTFRQKQLLDMHFKR 30

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (79), Expect = 6e-04
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 137 GEKKYKCERCSKKYAVQSDWKAHMKT 162
           GEK Y C  C K ++  S    H + 
Sbjct: 4   GEKPYGCVECGKAFSRSSILVQHQRV 29

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.3 bits (79), Expect = 6e-04
 Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 1/31 (3%)

Query: 133 SRKH-GEKKYKCERCSKKYAVQSDWKAHMKT 162
           +R   G K ++C  C + ++       H K 
Sbjct: 3   TRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	241
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.67
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.6
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.27
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.26
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.25
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.19
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.19
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.17
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.16
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.13
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.08
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.07
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.03
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.02
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.01
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.98
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.96
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.93
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.92
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.92
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.9
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.85
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.81
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.81
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.81
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.74
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.65
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.62
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.61
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.6
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.58
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.58
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.53
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.53
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.5
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.49
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.48
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.47
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.47
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.43
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.42
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.34
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.22
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.2
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.17
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.1
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.03
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.93
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.88
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.87
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.85
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.83
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.75
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.7
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.64
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.6
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.58
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.58
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.57
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.56
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.56
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.52
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.51
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.49
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.43
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.42
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.4
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.4
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.39
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.35
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.33
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.32
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.19
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.17
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.17
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.16
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.16
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.12
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.11
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.11
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.92
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.85
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.78
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.75
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.59
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.55
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.53
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.35
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.34
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	96.32
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	96.28
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.18
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.08
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	96.04
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.9
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	95.7
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.08
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.04
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.75
d1y0jb1	36	U-shaped transcription factor, different fingers {	94.73
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	94.58
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	94.37
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.31
d1y0jb1	36	U-shaped transcription factor, different fingers {	93.5
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	93.03
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	92.67
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	92.38
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	92.18
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	92.18
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	91.9
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	91.26
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	91.12
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	91.11
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	90.68
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	90.29
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	89.21
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	89.12
d2czra1	218	TBP-interacting protein {Thermococcus kodakaraensi	88.38
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	88.25
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	88.17
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	88.03
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	87.28
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	86.8
d2czra1	218	TBP-interacting protein {Thermococcus kodakaraensi	86.27
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	84.03
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	83.58
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	82.84
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	82.43
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	80.51
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	80.5

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.8e-17  Score=98.05  Aligned_cols=51  Identities=31%  Similarity=0.744  Sum_probs=41.6

Q ss_pred             CceeecccccccccchhhHHHHHHH-hCCcceecC-CCCCcCCcchHHHHHHhc
Q 026210          138 EKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITHRAFC  189 (241)
Q Consensus       138 ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k~f~~~~~L~~H~~~~  189 (241)
                      ||+|.| .||+.|..+..|..|+++ .|+++|.|. |++.|...+.|..|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            578888 488888888888888888 588888888 888888888888888766

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.6e-16  Score=93.84  Aligned_cols=53  Identities=26%  Similarity=0.590  Sum_probs=50.4

Q ss_pred             CccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccccchhhHHHHHHHh
Q 026210          103 KKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTC  163 (241)
Q Consensus       103 ~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~~  163 (241)
                      +++|.| .|       ++.|.....|..|+++|+++++|.|.+||+.|.....|..|+++|
T Consensus         1 EK~y~C-~C-------gk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QC-------GKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TT-------SCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CC-------CCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            579999 59       999999999999999999999999999999999999999999865

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=5.7e-13  Score=71.91  Aligned_cols=36  Identities=28%  Similarity=0.653  Sum_probs=32.1

Q ss_pred             hhhccccCCceeecccccccccchhhHHHHHHH-hCC
Q 026210          130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGT  165 (241)
Q Consensus       130 ~H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~  165 (241)
                      +|+++|+++|||.|.+|||.|...+.|..|+++ +||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            588999999999999999999999999999998 454

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.4e-12  Score=70.26  Aligned_cols=34  Identities=29%  Similarity=0.678  Sum_probs=24.0

Q ss_pred             CceeecccccccccchhhHHHHHH-H-hCCcceecC
Q 026210          138 EKKYKCERCSKKYAVQSDWKAHMK-T-CGTREYKCD  171 (241)
Q Consensus       138 ek~~~C~~C~k~f~~~~~L~~H~~-~-~~~k~~~C~  171 (241)
                      +|||+|.+||+.|...++|..|++ + .|+|||.|+
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            577777777777777777777765 3 377777774

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=9.3e-13  Score=70.57  Aligned_cols=33  Identities=18%  Similarity=0.443  Sum_probs=28.6

Q ss_pred             hhccccCCceeecccccccccchhhHHHHHHHh
Q 026210          131 HFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTC  163 (241)
Q Consensus       131 H~~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~~  163 (241)
                      |.++|+|||||+|.+|++.|.+++.|..|+++|
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H   34 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcC
Confidence            678888999999988988888888888888875

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.7e-12  Score=69.02  Aligned_cols=33  Identities=27%  Similarity=0.568  Sum_probs=27.8

Q ss_pred             ccccCCceeecccccccccchhhHHHHHHHhCC
Q 026210          133 SRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGT  165 (241)
Q Consensus       133 ~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~~~~  165 (241)
                      ++|+|||||+|.+||+.|..++.|..|+++|.+
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~   33 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD   33 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTC
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCC
Confidence            578899999999999999999999999888533

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=5.8e-12  Score=67.76  Aligned_cols=37  Identities=27%  Similarity=0.637  Sum_probs=33.7

Q ss_pred             CCCCccccccccccCChhHHHHHhh-hcCCCchhhhcchhhhcCccccCCC
Q 026210           61 ATNRFVCEICNKGFQRDQNLQLHRR-GHNLPWKLKQRNSKEVRKKVYVCPE  110 (241)
Q Consensus        61 ~~~~~~C~~C~~~f~~~~~L~~H~~-~h~~~~~~~~~~~~~~~~~~~~C~~  110 (241)
                      .++||+|.+||+.|....+|.+|++ +|+             ++++|.|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht-------------~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHT-------------SERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSC-------------CCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccC-------------CCcCcCCcC
Confidence            4689999999999999999999986 798             899999964

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=5.5e-12  Score=65.20  Aligned_cols=30  Identities=30%  Similarity=0.543  Sum_probs=24.4

Q ss_pred             cccCCceeecccccccccchhhHHHHHHHh
Q 026210          134 RKHGEKKYKCERCSKKYAVQSDWKAHMKTC  163 (241)
Q Consensus       134 ~h~~ek~~~C~~C~k~f~~~~~L~~H~~~~  163 (241)
                      +|+++|||+|.+||+.|..++.|..|+++|
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~H   30 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVH   30 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGG
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhcccc
Confidence            478888888888888888888888888874

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=6.8e-12  Score=66.51  Aligned_cols=33  Identities=24%  Similarity=0.526  Sum_probs=27.4

Q ss_pred             ccccCCceeecccccccccchhhHHHHHHH-hCC
Q 026210          133 SRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGT  165 (241)
Q Consensus       133 ~~h~~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~  165 (241)
                      ++|+|||||+|.+|++.|.++++|..|++. |++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            478889999999999999999999988876 654

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.2e-11  Score=66.64  Aligned_cols=35  Identities=31%  Similarity=0.582  Sum_probs=33.7

Q ss_pred             cCccccCCCCCccccccccccCChhHHHHHhhhcC
Q 026210           54 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        54 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      .|+.+|++++||+|++||+.|...++|..|+++|+
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~Ht   36 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT   36 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTC
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCC
Confidence            57899999999999999999999999999999998

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=1.2e-11  Score=64.79  Aligned_cols=29  Identities=17%  Similarity=0.587  Sum_probs=20.2

Q ss_pred             ccCCceeecccccccccchhhHHHHHHHh
Q 026210          135 KHGEKKYKCERCSKKYAVQSDWKAHMKTC  163 (241)
Q Consensus       135 h~~ek~~~C~~C~k~f~~~~~L~~H~~~~  163 (241)
                      |+|||||+|.+|++.|.++++|.+|+++|
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~H   30 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVH   30 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGG
T ss_pred             CCCCccccCCCCCCcccChHHHHHHcccc
Confidence            56677777777777777777777777665

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.6e-11  Score=62.63  Aligned_cols=31  Identities=29%  Similarity=0.497  Sum_probs=29.7

Q ss_pred             ccCCCCCccccccccccCChhHHHHHhhhcC
Q 026210           58 TLLATNRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        58 ~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      +|++++||+|.+||+.|...++|..|+++|+
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~Ht   31 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHT   31 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGG
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccC
Confidence            4789999999999999999999999999997

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.07  E-value=3.8e-11  Score=64.11  Aligned_cols=34  Identities=32%  Similarity=0.670  Sum_probs=32.3

Q ss_pred             CccccCCCCCccccccccccCChhHHHHHhhhcC
Q 026210           55 SPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        55 ~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      |.++|++++||+|.+|++.|....+|.+|+++|.
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            5789999999999999999999999999999985

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=5.6e-11  Score=62.98  Aligned_cols=32  Identities=25%  Similarity=0.565  Sum_probs=30.7

Q ss_pred             cccCCCCCccccccccccCChhHHHHHhhhcC
Q 026210           57 KTLLATNRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        57 ~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      ++|++++||+|.+||+.|....+|..|+++|+
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~   32 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH   32 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTT
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccC
Confidence            47899999999999999999999999999997

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=6.4e-11  Score=61.96  Aligned_cols=30  Identities=30%  Similarity=0.533  Sum_probs=28.9

Q ss_pred             cCCCCCccccccccccCChhHHHHHhhhcC
Q 026210           59 LLATNRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        59 ~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      +++++||+|.+|++.|....+|.+|+++|+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht   31 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccC
Confidence            689999999999999999999999999997

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=4.4e-11  Score=59.21  Aligned_cols=25  Identities=20%  Similarity=0.707  Sum_probs=13.5

Q ss_pred             CceeecccccccccchhhHHHHHHH
Q 026210          138 EKKYKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       138 ek~~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      ||||+|.+|++.|.+++.|..|+++
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~   25 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRT   25 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCC
Confidence            3555555555555555555555555

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.98  E-value=7e-11  Score=66.42  Aligned_cols=40  Identities=23%  Similarity=0.491  Sum_probs=34.1

Q ss_pred             hhHhhhhccccCCceeeccc--ccccccchhhHHHHHHH-hCCc
Q 026210          126 TGIKKHFSRKHGEKKYKCER--CSKKYAVQSDWKAHMKT-CGTR  166 (241)
Q Consensus       126 ~~l~~H~~~h~~ek~~~C~~--C~k~f~~~~~L~~H~~~-~~~k  166 (241)
                      ..|..|++ |++++||.|.+  |++.|.+++.|..|+++ +|+|
T Consensus         5 ~~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           5 GSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SSGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             chhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            34667775 99999999987  99999999999999999 5664

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=1.8e-10  Score=56.98  Aligned_cols=27  Identities=30%  Similarity=0.582  Sum_probs=22.6

Q ss_pred             CcceecC-CCCCcCCcchHHHHHHhccC
Q 026210          165 TREYKCD-CGTIFSRRDSFITHRAFCDA  191 (241)
Q Consensus       165 ~k~~~C~-C~k~f~~~~~L~~H~~~~~~  191 (241)
                      ||||.|. |+|.|.+++.|.+|+++|.+
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            6888888 88888888888888888853

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.5e-10  Score=55.81  Aligned_cols=24  Identities=38%  Similarity=0.876  Sum_probs=14.9

Q ss_pred             cceecC-CCCCcCCcchHHHHHHhc
Q 026210          166 REYKCD-CGTIFSRRDSFITHRAFC  189 (241)
Q Consensus       166 k~~~C~-C~k~f~~~~~L~~H~~~~  189 (241)
                      |||+|. |||.|...+.|..|+++|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            456666 666666666666666655

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.4e-10  Score=60.38  Aligned_cols=32  Identities=19%  Similarity=0.486  Sum_probs=29.1

Q ss_pred             cccCCCCCccccccccccCChhHHHHHhhhcC
Q 026210           57 KTLLATNRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        57 ~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      ++|++++||+|++|++.|....+|..|++.++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H   32 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKH   32 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHccccc
Confidence            47899999999999999999999999986554

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.92  E-value=3.2e-10  Score=56.74  Aligned_cols=26  Identities=42%  Similarity=1.003  Sum_probs=25.2

Q ss_pred             CCccccccccccCChhHHHHHhhhcC
Q 026210           63 NRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        63 ~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      +||.|.+||+.|....+|.+|+++|+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HT   26 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTT
T ss_pred             CcCCCCCCCCCCCCchHcccccCccc
Confidence            68999999999999999999999998

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=2.1e-10  Score=55.24  Aligned_cols=26  Identities=31%  Similarity=0.637  Sum_probs=24.5

Q ss_pred             CCccccccccccCChhHHHHHhhhcC
Q 026210           63 NRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        63 ~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      +||+|.+|||.|...++|.+|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            68999999999999999999999983

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=5.8e-10  Score=55.66  Aligned_cols=26  Identities=35%  Similarity=0.756  Sum_probs=25.2

Q ss_pred             CCccccccccccCChhHHHHHhhhcC
Q 026210           63 NRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        63 ~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      ++|.|.+||+.|...++|.+|+++|+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Ht   26 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQ   26 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGG
T ss_pred             CCEECCcCCCeecchHHhhhhcCccC
Confidence            68999999999999999999999998

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.2e-09  Score=57.53  Aligned_cols=26  Identities=19%  Similarity=0.461  Sum_probs=13.3

Q ss_pred             CCcCCChhhHhhhhccccCCceeecc
Q 026210          119 ARALGDLTGIKKHFSRKHGEKKYKCE  144 (241)
Q Consensus       119 ~~~f~~~~~l~~H~~~h~~ek~~~C~  144 (241)
                      ++.|.....|++|+++|+|+|||+|+
T Consensus        10 ~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2          10 GKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             CCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             CCeeCChhHhccccCeeCCCCCEeCC
Confidence            45555555555555555555555543

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=5.6e-10  Score=58.76  Aligned_cols=31  Identities=35%  Similarity=0.896  Sum_probs=28.8

Q ss_pred             eeccc--ccccccchhhHHHHHHH-hCCcceecC
Q 026210          141 YKCER--CSKKYAVQSDWKAHMKT-CGTREYKCD  171 (241)
Q Consensus       141 ~~C~~--C~k~f~~~~~L~~H~~~-~~~k~~~C~  171 (241)
                      |.|.+  ||+.|.++..|++|+++ +|+|||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            78876  99999999999999999 699999995

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.81  E-value=1.1e-09  Score=54.72  Aligned_cols=24  Identities=29%  Similarity=0.768  Sum_probs=13.2

Q ss_pred             ceeecccccccccchhhHHHHHHH
Q 026210          139 KKYKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       139 k~~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      |||.|.+||+.|.+.+.|.+|+++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~   24 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRS   24 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHT
T ss_pred             CcCCCCCCCCCCCCchHcccccCc
Confidence            345555555555555555555555

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=2.3e-09  Score=53.40  Aligned_cols=24  Identities=33%  Similarity=0.791  Sum_probs=13.8

Q ss_pred             ceeecccccccccchhhHHHHHHH
Q 026210          139 KKYKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       139 k~~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      |||.|.+||+.|.+++.|.+|+++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~   24 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKT   24 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHG
T ss_pred             CCEECCcCCCeecchHHhhhhcCc
Confidence            355555555555555555555555

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.65  E-value=3.9e-09  Score=59.10  Aligned_cols=37  Identities=30%  Similarity=0.488  Sum_probs=32.9

Q ss_pred             ccccCccccCCCCCccccc--cccccCChhHHHHHhhhcC
Q 026210           51 VIALSPKTLLATNRFVCEI--CNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        51 ~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~L~~H~~~h~   88 (241)
                      .+..+.. +.++++|.|.+  |++.|....+|..|+++|+
T Consensus         6 ~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Ht   44 (47)
T d1ncsa_           6 SIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             SGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             hhcchhh-ccCCCCeECCcCCCCccccCchHHHhhccccc
Confidence            4555664 99999999987  9999999999999999998

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1e-08  Score=51.32  Aligned_cols=26  Identities=35%  Similarity=0.731  Sum_probs=25.0

Q ss_pred             CCccccc--cccccCChhHHHHHhhhcC
Q 026210           63 NRFVCEI--CNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        63 ~~~~C~~--C~~~f~~~~~L~~H~~~h~   88 (241)
                      +||.|++  |++.|...++|.+|+++|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~Ht   28 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHT   28 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTT
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCc
Confidence            6899998  9999999999999999998

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.61  E-value=1e-08  Score=52.17  Aligned_cols=26  Identities=35%  Similarity=0.795  Sum_probs=13.4

Q ss_pred             CcceecC---CCCCcCCcchHHHHHHhcc
Q 026210          165 TREYKCD---CGTIFSRRDSFITHRAFCD  190 (241)
Q Consensus       165 ~k~~~C~---C~k~f~~~~~L~~H~~~~~  190 (241)
                      ||||.|.   |++.|.+.+.|.+|+++|.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            3455552   5555555555555555554

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.60  E-value=1.3e-08  Score=51.77  Aligned_cols=29  Identities=24%  Similarity=0.654  Sum_probs=26.2

Q ss_pred             Cceeeccc--ccccccchhhHHHHHHHhCCc
Q 026210          138 EKKYKCER--CSKKYAVQSDWKAHMKTCGTR  166 (241)
Q Consensus       138 ek~~~C~~--C~k~f~~~~~L~~H~~~~~~k  166 (241)
                      ||||.|.+  |++.|.+.+.|.+|+++|..+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            68999988  999999999999999997543

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.6e-08  Score=50.74  Aligned_cols=23  Identities=17%  Similarity=0.762  Sum_probs=11.4

Q ss_pred             eeeccc--ccccccchhhHHHHHHH
Q 026210          140 KYKCER--CSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       140 ~~~C~~--C~k~f~~~~~L~~H~~~  162 (241)
                      ||.|.+  ||+.|.+.+.|.+|+++
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~   26 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLRTHVRI   26 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHHH
T ss_pred             CccCCCCCCCceECcHHHcCccccc
Confidence            445544  55555555555555544

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.4e-08  Score=50.80  Aligned_cols=17  Identities=29%  Similarity=0.753  Sum_probs=7.1

Q ss_pred             ccccccchhhHHHHHHH
Q 026210          146 CSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       146 C~k~f~~~~~L~~H~~~  162 (241)
                      |++.|.+++.|.+|+++
T Consensus        10 Cgk~F~~~~~L~~H~r~   26 (30)
T d2glia3          10 CRKSYSRLENLKTHLRS   26 (30)
T ss_dssp             CCCCCSSHHHHHHHHHH
T ss_pred             CCceECChhHhhhhcCc
Confidence            44444444444444443

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.1e-08  Score=51.25  Aligned_cols=26  Identities=42%  Similarity=0.740  Sum_probs=24.7

Q ss_pred             CCccccc--cccccCChhHHHHHhhhcC
Q 026210           63 NRFVCEI--CNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        63 ~~~~C~~--C~~~f~~~~~L~~H~~~h~   88 (241)
                      +||.|++  ||+.|....+|..|+++|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HT   28 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHT   28 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CCccCCCCCCCceECcHHHcCccccccC
Confidence            6899987  9999999999999999997

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=2.8e-08  Score=50.20  Aligned_cols=30  Identities=23%  Similarity=0.526  Sum_probs=16.8

Q ss_pred             cccCCCCCcccCCCCCcCCChhhHhhhhccccCCc
Q 026210          105 VYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEK  139 (241)
Q Consensus       105 ~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek  139 (241)
                      +|.|++-+|     ++.|....+|..|+++|+|||
T Consensus         2 pf~C~~~~C-----~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           2 PFMCTWSYC-----GKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCBCCSTTC-----CCBCSSHHHHHHHHTTTSCCC
T ss_pred             cCCCcCCCC-----CcCcCChhHhhhhcCcccccC
Confidence            455544333     566666666666666666553

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2e-08  Score=49.23  Aligned_cols=24  Identities=25%  Similarity=0.578  Sum_probs=17.7

Q ss_pred             cceecC---CCCCcCCcchHHHHHHhc
Q 026210          166 REYKCD---CGTIFSRRDSFITHRAFC  189 (241)
Q Consensus       166 k~~~C~---C~k~f~~~~~L~~H~~~~  189 (241)
                      |||.|+   |+|.|.+.++|++|+++|
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            567774   777777777777777776

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=2.7e-08  Score=46.94  Aligned_cols=25  Identities=32%  Similarity=0.745  Sum_probs=15.5

Q ss_pred             CcceecC-CCCCcCCcchHHHHHHhc
Q 026210          165 TREYKCD-CGTIFSRRDSFITHRAFC  189 (241)
Q Consensus       165 ~k~~~C~-C~k~f~~~~~L~~H~~~~  189 (241)
                      ||||.|+ ||+.|.++...++|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            4566666 666666666666666655

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=4.3e-08  Score=49.50  Aligned_cols=26  Identities=42%  Similarity=0.898  Sum_probs=24.3

Q ss_pred             CCcccc--ccccccCChhHHHHHhhhcC
Q 026210           63 NRFVCE--ICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        63 ~~~~C~--~C~~~f~~~~~L~~H~~~h~   88 (241)
                      +||.|+  .||+.|....+|.+|+++|+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Ht   28 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCccc
Confidence            589996  59999999999999999998

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.9e-08  Score=49.30  Aligned_cols=26  Identities=38%  Similarity=0.760  Sum_probs=24.3

Q ss_pred             CCccccc--cccccCChhHHHHHhhhcC
Q 026210           63 NRFVCEI--CNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        63 ~~~~C~~--C~~~f~~~~~L~~H~~~h~   88 (241)
                      +||.|+.  ||+.|....+|++|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6899988  9999999999999999984

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.47  E-value=4.1e-08  Score=46.29  Aligned_cols=26  Identities=35%  Similarity=0.732  Sum_probs=23.8

Q ss_pred             CceeecccccccccchhhHHHHHHHh
Q 026210          138 EKKYKCERCSKKYAVQSDWKAHMKTC  163 (241)
Q Consensus       138 ek~~~C~~C~k~f~~~~~L~~H~~~~  163 (241)
                      ||||.|++||+.|.+.+..++|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            68999999999999999999998876

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.43  E-value=2.5e-08  Score=49.42  Aligned_cols=18  Identities=28%  Similarity=0.497  Sum_probs=9.0

Q ss_pred             CCCCcCCcchHHHHHHhc
Q 026210          172 CGTIFSRRDSFITHRAFC  189 (241)
Q Consensus       172 C~k~f~~~~~L~~H~~~~  189 (241)
                      |+|.|.+.+.|.+|+++|
T Consensus        10 C~k~F~~~~~L~~H~r~H   27 (29)
T d1a1ia1          10 CDRRFSRSADLTRHIRIH   27 (29)
T ss_dssp             CCCEESSHHHHHHHTHHH
T ss_pred             CCcEECchhHhhhhcCcc
Confidence            555555555555554444

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=8.7e-08  Score=43.63  Aligned_cols=25  Identities=40%  Similarity=0.805  Sum_probs=23.6

Q ss_pred             CccccccccccCChhHHHHHhhhcC
Q 026210           64 RFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        64 ~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      |++|+.|++.|+....|..||+.|+
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccC
Confidence            5789999999999999999999996

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.2e-07  Score=45.39  Aligned_cols=26  Identities=19%  Similarity=0.494  Sum_probs=21.9

Q ss_pred             cceecC---CCCCcCCcchHHHHHHhccC
Q 026210          166 REYKCD---CGTIFSRRDSFITHRAFCDA  191 (241)
Q Consensus       166 k~~~C~---C~k~f~~~~~L~~H~~~~~~  191 (241)
                      |||.|.   |+|+|...++|++|++.+|+
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            688885   88999999999999988774

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=2.3e-07  Score=42.23  Aligned_cols=22  Identities=36%  Similarity=0.738  Sum_probs=12.7

Q ss_pred             eecccccccccchhhHHHHHHH
Q 026210          141 YKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       141 ~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      .+|++|++.|.+++.|+.|++.
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~   23 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRC   23 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGG
T ss_pred             CccchhhhHhcchhHHHHHhhc
Confidence            4555566666665555555554

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.20  E-value=2e-07  Score=46.05  Aligned_cols=24  Identities=21%  Similarity=0.771  Sum_probs=15.3

Q ss_pred             ceeeccc--ccccccchhhHHHHHHH
Q 026210          139 KKYKCER--CSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       139 k~~~C~~--C~k~f~~~~~L~~H~~~  162 (241)
                      |||+|.+  |++.|.+.+.|.+|+++
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~   26 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRI   26 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCc
Confidence            4566655  66666666666666665

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=6.6e-07  Score=43.74  Aligned_cols=26  Identities=35%  Similarity=0.683  Sum_probs=24.2

Q ss_pred             CCccccccccccCChhHHHHHhhhcC
Q 026210           63 NRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        63 ~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      +...|+.||+.|.+...|.+|...|.
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs   29 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHS   29 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccC
Confidence            45689999999999999999999998

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=8.1e-07  Score=42.39  Aligned_cols=26  Identities=23%  Similarity=0.608  Sum_probs=18.8

Q ss_pred             CceeecccccccccchhhHHHHHHHh
Q 026210          138 EKKYKCERCSKKYAVQSDWKAHMKTC  163 (241)
Q Consensus       138 ek~~~C~~C~k~f~~~~~L~~H~~~~  163 (241)
                      ||||.|.+|...|.+++.+..|.+.|
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrsh   26 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSH   26 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHH
T ss_pred             CCCcccchHHHHhhccccceEeeecc
Confidence            46777777777777777777777765

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=8.2e-07  Score=42.37  Aligned_cols=28  Identities=32%  Similarity=0.649  Sum_probs=26.0

Q ss_pred             CcceecC-CCCCcCCcchHHHHHHhccCc
Q 026210          165 TREYKCD-CGTIFSRRDSFITHRAFCDAL  192 (241)
Q Consensus       165 ~k~~~C~-C~k~f~~~~~L~~H~~~~~~~  192 (241)
                      ||||.|. |...|.++..+.-|.+.|.+.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            6899999 999999999999999999863

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.93  E-value=2.3e-06  Score=38.44  Aligned_cols=23  Identities=26%  Similarity=0.699  Sum_probs=17.7

Q ss_pred             eecC-CCCCcCCcchHHHHHHhcc
Q 026210          168 YKCD-CGTIFSRRDSFITHRAFCD  190 (241)
Q Consensus       168 ~~C~-C~k~f~~~~~L~~H~~~~~  190 (241)
                      |+|. |.++|..++.|.+|+++|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            6777 8888888888888877764

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=3.2e-06  Score=39.06  Aligned_cols=25  Identities=24%  Similarity=0.505  Sum_probs=21.6

Q ss_pred             cceecC-CCCCcCCcchHHHHHHhcc
Q 026210          166 REYKCD-CGTIFSRRDSFITHRAFCD  190 (241)
Q Consensus       166 k~~~C~-C~k~f~~~~~L~~H~~~~~  190 (241)
                      |||+|. |.+.-...++|++|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            788898 9988888899999988874

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=2.7e-06  Score=41.53  Aligned_cols=23  Identities=26%  Similarity=0.498  Sum_probs=14.3

Q ss_pred             CCcCCChhhHhhhhccccCCcee
Q 026210          119 ARALGDLTGIKKHFSRKHGEKKY  141 (241)
Q Consensus       119 ~~~f~~~~~l~~H~~~h~~ek~~  141 (241)
                      ++.|.....|.+|...|++||||
T Consensus        12 gk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1          12 GKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             TEEESSHHHHHHHGGGSCSCCCC
T ss_pred             HHHHHHHHHHHhhhcccCCCCCC
Confidence            66666666666666666666655

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=5.2e-06  Score=38.43  Aligned_cols=25  Identities=32%  Similarity=0.599  Sum_probs=23.3

Q ss_pred             CccccccccccCChhHHHHHhhhcC
Q 026210           64 RFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        64 ~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      .+.|.+||+.|...+.|++|+.+|+
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvht   26 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHT   26 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTS
T ss_pred             cchHHHHhHHHHHHHHHHHHhhccc
Confidence            4679999999999999999999997

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=4.2e-06  Score=38.96  Aligned_cols=27  Identities=19%  Similarity=0.381  Sum_probs=17.7

Q ss_pred             CcceecC-CCCCcCCcchHHHHHHhccC
Q 026210          165 TREYKCD-CGTIFSRRDSFITHRAFCDA  191 (241)
Q Consensus       165 ~k~~~C~-C~k~f~~~~~L~~H~~~~~~  191 (241)
                      ++||+|. |.+.-+..+.|..|++.|.+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCcceeeecccccCCchheEEeeecccC
Confidence            4566666 66666666666666666653

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=9.5e-06  Score=41.88  Aligned_cols=25  Identities=40%  Similarity=0.834  Sum_probs=12.2

Q ss_pred             CCcceecC-CCCCcCCcchHHHHHHh
Q 026210          164 GTREYKCD-CGTIFSRRDSFITHRAF  188 (241)
Q Consensus       164 ~~k~~~C~-C~k~f~~~~~L~~H~~~  188 (241)
                      |.|||.|. |+|.|....++.+|.-.
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhhh
Confidence            34455555 55555555555555433

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=7.8e-06  Score=42.20  Aligned_cols=27  Identities=26%  Similarity=0.751  Sum_probs=24.7

Q ss_pred             cCCceeecccccccccchhhHHHHHHH
Q 026210          136 HGEKKYKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       136 ~~ek~~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      +|.|||.|..|+|.|...+.+.+|...
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhh
Confidence            478999999999999999999999765

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=1.6e-05  Score=36.65  Aligned_cols=26  Identities=23%  Similarity=0.511  Sum_probs=24.6

Q ss_pred             CCccccccccccCChhHHHHHhhhcC
Q 026210           63 NRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        63 ~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      +||+|..|...-.+.+.|..|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            78999999999999999999999985

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.60  E-value=1.5e-05  Score=37.17  Aligned_cols=24  Identities=25%  Similarity=0.519  Sum_probs=18.5

Q ss_pred             cceecC---CCCCcCCcchHHHHHHhc
Q 026210          166 REYKCD---CGTIFSRRDSFITHRAFC  189 (241)
Q Consensus       166 k~~~C~---C~k~f~~~~~L~~H~~~~  189 (241)
                      .||.|.   |++.|...+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            477884   888888888888887776

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=2e-05  Score=36.43  Aligned_cols=20  Identities=25%  Similarity=0.398  Sum_probs=12.7

Q ss_pred             CCcCCChhhHhhhhccccCC
Q 026210          119 ARALGDLTGIKKHFSRKHGE  138 (241)
Q Consensus       119 ~~~f~~~~~l~~H~~~h~~e  138 (241)
                      ++.|...+.|++|+.+|+||
T Consensus         9 gkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           9 GKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CCEESSHHHHHHHGGGTSCC
T ss_pred             hHHHHHHHHHHHHhhcccCC
Confidence            66666666666666666654

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=2.2e-05  Score=36.73  Aligned_cols=27  Identities=22%  Similarity=0.421  Sum_probs=20.9

Q ss_pred             ccCCCCCcccCCCCCcCCChhhHhhhhccccCCc
Q 026210          106 YVCPESTCVHHNPARALGDLTGIKKHFSRKHGEK  139 (241)
Q Consensus       106 ~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek  139 (241)
                      |.|++|       +......+.|++|++.|++++
T Consensus         2 YvC~~C-------g~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEEC-------GIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTT-------CCBCSSHHHHHHHHHHTSSCC
T ss_pred             cccccc-------CcccCCHHHHHHHHHHhcCCC
Confidence            678888       777777788888888888764

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=1.6e-05  Score=37.85  Aligned_cols=24  Identities=42%  Similarity=0.847  Sum_probs=13.7

Q ss_pred             ceeeccc--ccccccchhhHHHHHHH
Q 026210          139 KKYKCER--CSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       139 k~~~C~~--C~k~f~~~~~L~~H~~~  162 (241)
                      |||.|.+  |+|.+...++|+.|++.
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~   26 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKT   26 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHH
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHh
Confidence            3555544  55666666666666655

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.56  E-value=2.5e-05  Score=34.94  Aligned_cols=24  Identities=29%  Similarity=0.783  Sum_probs=22.5

Q ss_pred             ccccccccccCChhHHHHHhhhcC
Q 026210           65 FVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        65 ~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      |+|..|.+.|...+.|.+|++.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999984

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=2.2e-05  Score=36.70  Aligned_cols=23  Identities=26%  Similarity=0.716  Sum_probs=11.9

Q ss_pred             eeecccccccccchhhHHHHHHH
Q 026210          140 KYKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       140 ~~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      ||.|..|...|..+.+|..||+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            34555555555555555555543

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=1.7e-05  Score=37.09  Aligned_cols=23  Identities=22%  Similarity=0.547  Sum_probs=21.3

Q ss_pred             ceecC-CCCCcCCcchHHHHHHhc
Q 026210          167 EYKCD-CGTIFSRRDSFITHRAFC  189 (241)
Q Consensus       167 ~~~C~-C~k~f~~~~~L~~H~~~~  189 (241)
                      ||.|. |...|.++.+|.+||+..
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            79999 999999999999999863

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=3.3e-05  Score=35.87  Aligned_cols=27  Identities=30%  Similarity=0.647  Sum_probs=25.4

Q ss_pred             CCCccccccccccCChhHHHHHhhhcC
Q 026210           62 TNRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        62 ~~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      ++||+|..|...-...+.|..|++.|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~ht   27 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHT   27 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCC
T ss_pred             CCcceeeecccccCCchheEEeeeccc
Confidence            579999999999999999999999997

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.49  E-value=2.4e-05  Score=37.54  Aligned_cols=25  Identities=16%  Similarity=0.456  Sum_probs=17.6

Q ss_pred             eeecccccccccchhhHHHHHHH-hC
Q 026210          140 KYKCERCSKKYAVQSDWKAHMKT-CG  164 (241)
Q Consensus       140 ~~~C~~C~k~f~~~~~L~~H~~~-~~  164 (241)
                      ||.|.+|++.|.+++.|.+|... |+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            56777777777777777777666 54

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=4.3e-05  Score=35.85  Aligned_cols=25  Identities=20%  Similarity=0.409  Sum_probs=15.0

Q ss_pred             cceecC-CCCCcCCcchHHHHHHhcc
Q 026210          166 REYKCD-CGTIFSRRDSFITHRAFCD  190 (241)
Q Consensus       166 k~~~C~-C~k~f~~~~~L~~H~~~~~  190 (241)
                      |||.|. |.+.....++|+.|+++.|
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccccccccccccchhhhhhhhccc
Confidence            456666 6666666666666666554

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=3.5e-05  Score=38.35  Aligned_cols=32  Identities=25%  Similarity=0.448  Sum_probs=27.0

Q ss_pred             cccCCCCCcccCCCCCcCCChhhHhhhhccccCC
Q 026210          105 VYVCPESTCVHHNPARALGDLTGIKKHFSRKHGE  138 (241)
Q Consensus       105 ~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~e  138 (241)
                      .|.|.+-+|...  ++.|.....|..|+++|+||
T Consensus         2 ~y~C~W~~C~R~--~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           2 EFVCHWGGCSRE--LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCCCBTTCTTT--TCCCSSHHHHHHHTHHHHCC
T ss_pred             CeEEECCCCCCC--CCcchhHHHHHHHHhhcCCC
Confidence            578888888755  77899999999999999986

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.40  E-value=5.4e-05  Score=34.41  Aligned_cols=21  Identities=29%  Similarity=0.613  Sum_probs=11.5

Q ss_pred             ecccccccccchhhHHHHHHH
Q 026210          142 KCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       142 ~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      .|..|.+.|.++..|+.|-+.
T Consensus         2 qcp~c~k~f~skyylkvhnr~   22 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRK   22 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHH
T ss_pred             cCcchHHHHHHhHhhhhcccc
Confidence            355555555555555555555

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=6.2e-05  Score=35.24  Aligned_cols=26  Identities=35%  Similarity=0.644  Sum_probs=15.0

Q ss_pred             ceeecccccccccchhhHHHHHHH-hC
Q 026210          139 KKYKCERCSKKYAVQSDWKAHMKT-CG  164 (241)
Q Consensus       139 k~~~C~~C~k~f~~~~~L~~H~~~-~~  164 (241)
                      +||+|..|..-..+.++|..|++. |+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            356666666555566666666555 44

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.39  E-value=4.4e-05  Score=34.71  Aligned_cols=26  Identities=27%  Similarity=0.414  Sum_probs=24.2

Q ss_pred             cCCCCCcccCCCCCcCCChhhHhhhhccccCCc
Q 026210          107 VCPESTCVHHNPARALGDLTGIKKHFSRKHGEK  139 (241)
Q Consensus       107 ~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek  139 (241)
                      +|+.|       .+.|..+..|+.|.+.|+||+
T Consensus         2 qcp~c-------~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTC-------HKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTT-------CCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcch-------HHHHHHhHhhhhccccccCCC
Confidence            58899       999999999999999999985

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=6.8e-05  Score=34.98  Aligned_cols=24  Identities=21%  Similarity=0.458  Sum_probs=16.4

Q ss_pred             eecC-CCCCcCCcchHHHHHHhccC
Q 026210          168 YKCD-CGTIFSRRDSFITHRAFCDA  191 (241)
Q Consensus       168 ~~C~-C~k~f~~~~~L~~H~~~~~~  191 (241)
                      |.|+ |+......+.|.+|++.|.+
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~   26 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTD   26 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSS
T ss_pred             ccccccCcccCCHHHHHHHHHHhcC
Confidence            5666 77777777777777776654

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.33  E-value=5.4e-05  Score=35.25  Aligned_cols=25  Identities=28%  Similarity=0.586  Sum_probs=22.8

Q ss_pred             CCccccc--cccccCChhHHHHHhhhc
Q 026210           63 NRFVCEI--CNKGFQRDQNLQLHRRGH   87 (241)
Q Consensus        63 ~~~~C~~--C~~~f~~~~~L~~H~~~h   87 (241)
                      .||+|++  |++.|...+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            4899976  999999999999999887

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.32  E-value=6.2e-05  Score=38.56  Aligned_cols=27  Identities=26%  Similarity=0.603  Sum_probs=25.1

Q ss_pred             CCCccccccccccCChhHHHHHhhhcC
Q 026210           62 TNRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        62 ~~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      .+.|+|..|++.|.+...|--||+.|.
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHR   29 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhc
Confidence            367999999999999999999999996

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=7.4e-05  Score=34.97  Aligned_cols=26  Identities=19%  Similarity=0.424  Sum_probs=23.9

Q ss_pred             cceecC-CCCCcCCcchHHHHHHhccC
Q 026210          166 REYKCD-CGTIFSRRDSFITHRAFCDA  191 (241)
Q Consensus       166 k~~~C~-C~k~f~~~~~L~~H~~~~~~  191 (241)
                      +||+|. |..--...++|.+|++..|+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            689999 99999999999999998775

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00013  Score=34.15  Aligned_cols=26  Identities=38%  Similarity=0.689  Sum_probs=21.5

Q ss_pred             ceeecccccccccchhhHHHHHHH-hC
Q 026210          139 KKYKCERCSKKYAVQSDWKAHMKT-CG  164 (241)
Q Consensus       139 k~~~C~~C~k~f~~~~~L~~H~~~-~~  164 (241)
                      +||.|..|.......++|+.|+++ |+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCccccccccccccchhhhhhhhcccc
Confidence            578888888888888888888888 64

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.17  E-value=0.0001  Score=37.72  Aligned_cols=25  Identities=24%  Similarity=0.523  Sum_probs=13.4

Q ss_pred             cceecC-CCCCcCCcchHHHHHHhcc
Q 026210          166 REYKCD-CGTIFSRRDSFITHRAFCD  190 (241)
Q Consensus       166 k~~~C~-C~k~f~~~~~L~~H~~~~~  190 (241)
                      +.|.|. |++.|.+...|--||+.|.
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHR   29 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTC
T ss_pred             CccCCCCCCCccCCcccccchHhhhc
Confidence            345555 5555555555555555554

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=7.5e-05  Score=35.79  Aligned_cols=25  Identities=24%  Similarity=0.586  Sum_probs=19.1

Q ss_pred             cceecC---CCCCcCCcchHHHHH-Hhcc
Q 026210          166 REYKCD---CGTIFSRRDSFITHR-AFCD  190 (241)
Q Consensus       166 k~~~C~---C~k~f~~~~~L~~H~-~~~~  190 (241)
                      |||.|.   |.|.|...+.-.+|+ ++|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            578885   888888888888887 5553

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.16  E-value=0.00012  Score=34.04  Aligned_cols=27  Identities=33%  Similarity=0.792  Sum_probs=25.0

Q ss_pred             CCCccccccccccCChhHHHHHhhhcC
Q 026210           62 TNRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        62 ~~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      +..|.|..|...|.....|+.||-.|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvsht   28 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHT   28 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeeccc
Confidence            467999999999999999999999987

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00011  Score=37.29  Aligned_cols=26  Identities=23%  Similarity=0.675  Sum_probs=19.2

Q ss_pred             Ccceec--C-CCCCcCCcchHHHHHHhcc
Q 026210          165 TREYKC--D-CGTIFSRRDSFITHRAFCD  190 (241)
Q Consensus       165 ~k~~~C--~-C~k~f~~~~~L~~H~~~~~  190 (241)
                      +|||.|  . |+.+|.+...|..|++.|.
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhhe
Confidence            577777  3 7777777777777777765

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.11  E-value=0.0001  Score=35.28  Aligned_cols=25  Identities=36%  Similarity=0.770  Sum_probs=22.7

Q ss_pred             ceecC-CCCCcCCcchHHHHHHhccC
Q 026210          167 EYKCD-CGTIFSRRDSFITHRAFCDA  191 (241)
Q Consensus       167 ~~~C~-C~k~f~~~~~L~~H~~~~~~  191 (241)
                      ||.|. |++.|.+..-|.+|+..-|+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            79999 99999999999999987664

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.11  E-value=0.00016  Score=32.24  Aligned_cols=23  Identities=35%  Similarity=0.840  Sum_probs=15.5

Q ss_pred             eeecccccccccchhhHHHHHHH
Q 026210          140 KYKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       140 ~~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      ||+|..|...|..+.+|..||..
T Consensus         2 pykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHh
Confidence            56677777777777777766653

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.92  E-value=0.00024  Score=32.50  Aligned_cols=23  Identities=22%  Similarity=0.576  Sum_probs=15.5

Q ss_pred             eeecccccccccchhhHHHHHHH
Q 026210          140 KYKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       140 ~~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      ||+|..|||.|.++.+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            46677777777777777766543

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.85  E-value=0.00029  Score=32.83  Aligned_cols=26  Identities=15%  Similarity=0.438  Sum_probs=20.1

Q ss_pred             cceecC---CCCCcCCcchHHHHHHhccC
Q 026210          166 REYKCD---CGTIFSRRDSFITHRAFCDA  191 (241)
Q Consensus       166 k~~~C~---C~k~f~~~~~L~~H~~~~~~  191 (241)
                      |||.|.   |.|.|.....|.+|..+|.+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtg   29 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTG   29 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHT
T ss_pred             CCcCcccccccccchhhhhhhhhhccccC
Confidence            577773   88888888888888877753

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00052  Score=34.76  Aligned_cols=27  Identities=15%  Similarity=0.539  Sum_probs=22.1

Q ss_pred             CCceeec--ccccccccchhhHHHHHHHh
Q 026210          137 GEKKYKC--ERCSKKYAVQSDWKAHMKTC  163 (241)
Q Consensus       137 ~ek~~~C--~~C~k~f~~~~~L~~H~~~~  163 (241)
                      .+|||.|  .-|+..|.+.+.|..|...|
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhh
Confidence            4788999  45899999999998888765

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.75  E-value=0.00032  Score=32.59  Aligned_cols=19  Identities=11%  Similarity=0.258  Sum_probs=9.7

Q ss_pred             CCcCCChhhHhhhhccccC
Q 026210          119 ARALGDLTGIKKHFSRKHG  137 (241)
Q Consensus       119 ~~~f~~~~~l~~H~~~h~~  137 (241)
                      ...|...-.|..||..|+|
T Consensus        11 qe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3          11 QETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             CCEESSHHHHHHHHHHHSS
T ss_pred             HHHHHHHHhheeeeecccC
Confidence            4555555555555555544

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.59  E-value=0.00063  Score=30.27  Aligned_cols=22  Identities=27%  Similarity=0.683  Sum_probs=20.3

Q ss_pred             ceecC-CCCCcCCcchHHHHHHh
Q 026210          167 EYKCD-CGTIFSRRDSFITHRAF  188 (241)
Q Consensus       167 ~~~C~-C~k~f~~~~~L~~H~~~  188 (241)
                      ||+|. |...|..+..|..|+-.
T Consensus         2 pykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHh
Confidence            79999 99999999999999854

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.55  E-value=0.00043  Score=32.27  Aligned_cols=29  Identities=24%  Similarity=0.581  Sum_probs=15.4

Q ss_pred             cccCCCCCcccCCCCCcCCChhhHhhhhccccCC
Q 026210          105 VYVCPESTCVHHNPARALGDLTGIKKHFSRKHGE  138 (241)
Q Consensus       105 ~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~e  138 (241)
                      +|.|.+-+|     .+.|.....|.+|..+|+||
T Consensus         2 pfpc~~egc-----~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           2 PFPCKEEGC-----EKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             SEECCCSSC-----CCEESSTTHHHHHHHHHHTC
T ss_pred             CcCcccccc-----cccchhhhhhhhhhccccCC
Confidence            444554444     55555555555555555543

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.53  E-value=0.00092  Score=29.85  Aligned_cols=22  Identities=32%  Similarity=0.723  Sum_probs=15.8

Q ss_pred             eecccccccccchhhHHHHHHH
Q 026210          141 YKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       141 ~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      |.|..|-+.|.+++++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            5677777777777777777665

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.00076  Score=35.92  Aligned_cols=27  Identities=26%  Similarity=0.576  Sum_probs=24.2

Q ss_pred             CCCccccccccccCChhHHHHHhhhcC
Q 026210           62 TNRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        62 ~~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      ...|.|..|||.|.+...|+.|...|.
T Consensus         4 ~~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           4 AGILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             cceeeccccccccCCHHHHhHhHHhcC
Confidence            356899999999999999999998884

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.34  E-value=0.0011  Score=30.23  Aligned_cols=22  Identities=36%  Similarity=0.679  Sum_probs=20.2

Q ss_pred             CccccccccccCChhHHHHHhh
Q 026210           64 RFVCEICNKGFQRDQNLQLHRR   85 (241)
Q Consensus        64 ~~~C~~C~~~f~~~~~L~~H~~   85 (241)
                      ||+|..||+.|-...+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            6899999999999999999964

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0013  Score=32.10  Aligned_cols=22  Identities=18%  Similarity=0.658  Sum_probs=15.1

Q ss_pred             eecccccccccchhhHHHHHHH
Q 026210          141 YKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       141 ~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      |.|..|||.|.++..+.+|-..
T Consensus         5 fvcskcgktftrrntm~rha~n   26 (37)
T d1x6ha1           5 FVCSKCGKTFTRRNTMARHADN   26 (37)
T ss_dssp             EECSSSCCEESCHHHHHHHHHH
T ss_pred             eeecccccchhcchHHHHHhhh
Confidence            6677777777777776666654

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.0011  Score=32.36  Aligned_cols=27  Identities=30%  Similarity=0.818  Sum_probs=23.8

Q ss_pred             ceecC-CCCCcCCcchHHHHHHhccCch
Q 026210          167 EYKCD-CGTIFSRRDSFITHRAFCDALA  193 (241)
Q Consensus       167 ~~~C~-C~k~f~~~~~L~~H~~~~~~~~  193 (241)
                      .|.|. |+|.|.+...+.+|...+.+..
T Consensus         4 afvcskcgktftrrntm~rha~nc~g~d   31 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAGPD   31 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCCCC
Confidence            58999 9999999999999998887643

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.18  E-value=0.0014  Score=29.27  Aligned_cols=23  Identities=30%  Similarity=0.706  Sum_probs=21.4

Q ss_pred             eecC-CCCCcCCcchHHHHHHhcc
Q 026210          168 YKCD-CGTIFSRRDSFITHRAFCD  190 (241)
Q Consensus       168 ~~C~-C~k~f~~~~~L~~H~~~~~  190 (241)
                      |.|. |-|.|.++.++..|.+..|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            7899 9999999999999998866

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0018  Score=34.44  Aligned_cols=24  Identities=21%  Similarity=0.490  Sum_probs=12.9

Q ss_pred             eecccccccccchhhHHHHHHHhC
Q 026210          141 YKCERCSKKYAVQSDWKAHMKTCG  164 (241)
Q Consensus       141 ~~C~~C~k~f~~~~~L~~H~~~~~  164 (241)
                      |.|..|||.|.....|+.|...||
T Consensus         7 ~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           7 LPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeccccccccCCHHHHhHhHHhcC
Confidence            455555555555555555554443

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0023  Score=29.27  Aligned_cols=23  Identities=30%  Similarity=0.709  Sum_probs=19.6

Q ss_pred             eeecccccccccchhhHHHHHHH
Q 026210          140 KYKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       140 ~~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      .|.|+.|+-...++++|..|++.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            37888898888899999888886

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0015  Score=31.16  Aligned_cols=22  Identities=45%  Similarity=0.825  Sum_probs=13.9

Q ss_pred             ceeeccc--ccccccchhhHHHHH
Q 026210          139 KKYKCER--CSKKYAVQSDWKAHM  160 (241)
Q Consensus       139 k~~~C~~--C~k~f~~~~~L~~H~  160 (241)
                      |||.|..  |.|.|...++-..|+
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHq   24 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQ   24 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHH
T ss_pred             CCccccCCChhhhhcchhhhhhhc
Confidence            4566655  666666666666665

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0025  Score=29.34  Aligned_cols=19  Identities=16%  Similarity=0.357  Sum_probs=17.0

Q ss_pred             CCCCcCCcchHHHHHHhcc
Q 026210          172 CGTIFSRRDSFITHRAFCD  190 (241)
Q Consensus       172 C~k~f~~~~~L~~H~~~~~  190 (241)
                      |+|.|+..+.+++|+.+|-
T Consensus         9 C~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             CCCEESSHHHHHHHHGGGS
T ss_pred             HHHHhhchHHHHHHhhccC
Confidence            9999999999999998774

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.0075  Score=27.57  Aligned_cols=23  Identities=22%  Similarity=0.468  Sum_probs=15.2

Q ss_pred             eecccccccccchhhHHHHHHHh
Q 026210          141 YKCERCSKKYAVQSDWKAHMKTC  163 (241)
Q Consensus       141 ~~C~~C~k~f~~~~~L~~H~~~~  163 (241)
                      -+|..|.....++..|+.|.|+|
T Consensus         3 ekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           3 EKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGG
T ss_pred             ccCcccccccCcHHHHHHhhccc
Confidence            45666666666667777666664

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.04  E-value=0.0059  Score=27.62  Aligned_cols=22  Identities=27%  Similarity=0.780  Sum_probs=15.9

Q ss_pred             eec--C-CCCCcCCcchHHHHHHhc
Q 026210          168 YKC--D-CGTIFSRRDSFITHRAFC  189 (241)
Q Consensus       168 ~~C--~-C~k~f~~~~~L~~H~~~~  189 (241)
                      |.|  + |+|.|.....|+.|+-+|
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~h   26 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSH   26 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeecc
Confidence            566  3 788887777777777665

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.75  E-value=0.011  Score=26.99  Aligned_cols=25  Identities=24%  Similarity=0.421  Sum_probs=22.6

Q ss_pred             CccccccccccCChhHHHHHhhhcC
Q 026210           64 RFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        64 ~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      +-+|..|.........|+.|.++|-
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            4589999999999999999999984

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.73  E-value=0.006  Score=29.38  Aligned_cols=22  Identities=32%  Similarity=0.807  Sum_probs=15.9

Q ss_pred             ceecC-CCCCcCCcchHHHHHHh
Q 026210          167 EYKCD-CGTIFSRRDSFITHRAF  188 (241)
Q Consensus       167 ~~~C~-C~k~f~~~~~L~~H~~~  188 (241)
                      .|.|. ||.+|...+.|..|+..
T Consensus         8 rf~c~pcgirfss~stleahqty   30 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTTT
T ss_pred             ceeccccceeecChhHHHhhhhe
Confidence            46777 77777777777777643

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.58  E-value=0.012  Score=26.82  Aligned_cols=24  Identities=29%  Similarity=0.678  Sum_probs=21.5

Q ss_pred             CccccccccccCChhHHHHHhhhc
Q 026210           64 RFVCEICNKGFQRDQNLQLHRRGH   87 (241)
Q Consensus        64 ~~~C~~C~~~f~~~~~L~~H~~~h   87 (241)
                      .|.|+.|+.....++.|+.|++.-
T Consensus         2 k~qcphc~tiiarksdlrvhlrnl   25 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQ   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHT
T ss_pred             CccCCcchhheeehhhhhHHhhhc
Confidence            489999999999999999998753

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.37  E-value=0.013  Score=26.87  Aligned_cols=22  Identities=27%  Similarity=0.643  Sum_probs=19.1

Q ss_pred             cccc--cccccCChhHHHHHhhhc
Q 026210           66 VCEI--CNKGFQRDQNLQLHRRGH   87 (241)
Q Consensus        66 ~C~~--C~~~f~~~~~L~~H~~~h   87 (241)
                      .|+.  |++.|.+.+.++.|+.+|
T Consensus         3 ~CphkgC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           3 ACPHKGCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGGG
T ss_pred             cCCcccHHHHhhchHHHHHHhhcc
Confidence            3544  999999999999999888

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.31  E-value=0.014  Score=26.98  Aligned_cols=24  Identities=21%  Similarity=0.560  Sum_probs=14.2

Q ss_pred             ceecC---CCCCcCCcchHHHHHHhcc
Q 026210          167 EYKCD---CGTIFSRRDSFITHRAFCD  190 (241)
Q Consensus       167 ~~~C~---C~k~f~~~~~L~~H~~~~~  190 (241)
                      -|.|+   |+..|.++..+++|....|
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfnrfh   28 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFNRFH   28 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHHHHT
T ss_pred             CccccCCCcceEEeehHHHHHHHhhhc
Confidence            35563   6666666666666655544

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.50  E-value=0.016  Score=27.86  Aligned_cols=23  Identities=22%  Similarity=0.528  Sum_probs=19.1

Q ss_pred             eeecccccccccchhhHHHHHHH
Q 026210          140 KYKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       140 ~~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      .|.|.-||..|...+.|..|+..
T Consensus         8 rf~c~pcgirfss~stleahqty   30 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTTT
T ss_pred             ceeccccceeecChhHHHhhhhe
Confidence            48899999999999999888653

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.03  E-value=0.029  Score=25.87  Aligned_cols=24  Identities=21%  Similarity=0.513  Sum_probs=20.9

Q ss_pred             CccccccccccCChhHHHHHhhhc
Q 026210           64 RFVCEICNKGFQRDQNLQLHRRGH   87 (241)
Q Consensus        64 ~~~C~~C~~~f~~~~~L~~H~~~h   87 (241)
                      .|.|..||+...+...++.|+...
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmad   25 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMAN   25 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHH
T ss_pred             ceechhHHHHHhhccCceEEEeec
Confidence            488999999999999999996543

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.67  E-value=0.021  Score=27.78  Aligned_cols=27  Identities=15%  Similarity=0.449  Sum_probs=23.2

Q ss_pred             CCCCccccccccccCChhHHHHHhhhc
Q 026210           61 ATNRFVCEICNKGFQRDQNLQLHRRGH   87 (241)
Q Consensus        61 ~~~~~~C~~C~~~f~~~~~L~~H~~~h   87 (241)
                      ++..|.|..|.+.+...+++.+|.-+-
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtS   31 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTS   31 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHH
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhh
Confidence            456899999999999999999996543

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.38  E-value=0.062  Score=28.22  Aligned_cols=31  Identities=13%  Similarity=0.267  Sum_probs=24.0

Q ss_pred             CCceeecccccccccchhhHHHHHHH-hCCcc
Q 026210          137 GEKKYKCERCSKKYAVQSDWKAHMKT-CGTRE  167 (241)
Q Consensus       137 ~ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~  167 (241)
                      .+.|-.|.+|+....+..+|.+|+.. |-.||
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~hf~kp   52 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELRHFAKP   52 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHHTSCSC
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHhhccC
Confidence            46678888888888888888888887 64443

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.18  E-value=0.07  Score=24.55  Aligned_cols=22  Identities=23%  Similarity=0.593  Sum_probs=11.2

Q ss_pred             eecccccccccchhhHHHHHHH
Q 026210          141 YKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       141 ~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      |.|..|||...+...++.|...
T Consensus         3 ftc~hcgkqlks~~gmkyhvma   24 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMA   24 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHH
T ss_pred             eechhHHHHHhhccCceEEEee
Confidence            4455555555555555555443

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=92.18  E-value=0.022  Score=26.79  Aligned_cols=29  Identities=28%  Similarity=0.603  Sum_probs=16.4

Q ss_pred             cccCCCCCcccCCCCCcCCChhhHhhhhccccCC
Q 026210          105 VYVCPESTCVHHNPARALGDLTGIKKHFSRKHGE  138 (241)
Q Consensus       105 ~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~e  138 (241)
                      .|.|..-+|     +..|.....|+.|+-.|+||
T Consensus         3 ~~iCsf~dC-----~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           3 RYICSFADC-----GAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CEECSSGGG-----CCEESSHHHHHHHHHHHHCC
T ss_pred             ceEeeCCCc-----chhhccchhhhHHhhhhcCC
Confidence            355544444     55666666666666666554

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=91.90  E-value=0.087  Score=24.21  Aligned_cols=24  Identities=17%  Similarity=0.708  Sum_probs=17.9

Q ss_pred             eeec--ccccccccchhhHHHHHHH-h
Q 026210          140 KYKC--ERCSKKYAVQSDWKAHMKT-C  163 (241)
Q Consensus       140 ~~~C--~~C~k~f~~~~~L~~H~~~-~  163 (241)
                      .|.|  +.|+..|..+..++.|... |
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfnrfh   28 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFNRFH   28 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHHHHT
T ss_pred             CccccCCCcceEEeehHHHHHHHhhhc
Confidence            4667  3588888888888888766 5

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=91.26  E-value=0.044  Score=25.70  Aligned_cols=26  Identities=19%  Similarity=0.566  Sum_probs=18.7

Q ss_pred             cceecC---CCCCcCCcchHHHHHHhccC
Q 026210          166 REYKCD---CGTIFSRRDSFITHRAFCDA  191 (241)
Q Consensus       166 k~~~C~---C~k~f~~~~~L~~H~~~~~~  191 (241)
                      |.|.|.   |+..|....-|..|+..|.+
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTG   30 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTG   30 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcC
Confidence            457774   77778777777777777653

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.12  E-value=0.029  Score=32.69  Aligned_cols=23  Identities=17%  Similarity=0.579  Sum_probs=17.1

Q ss_pred             eeecccccccccchhhHHHHHHH
Q 026210          140 KYKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       140 ~~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      .|.|..|++.|.+...|..|+++
T Consensus        15 qfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTTC
T ss_pred             EEecccccCccCCHHHHHHHHcc
Confidence            47777777777777777777765

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.11  E-value=0.036  Score=32.25  Aligned_cols=26  Identities=23%  Similarity=0.327  Sum_probs=22.4

Q ss_pred             CCcceecC-CCCCcCCcchHHHHHHhc
Q 026210          164 GTREYKCD-CGTIFSRRDSFITHRAFC  189 (241)
Q Consensus       164 ~~k~~~C~-C~k~f~~~~~L~~H~~~~  189 (241)
                      |...|.|. |+|.|.+...|..|+++-
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ksK   38 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRSK   38 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             CCCEEecccccCccCCHHHHHHHHccc
Confidence            34569999 999999999999998873

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=90.68  E-value=0.1  Score=27.41  Aligned_cols=29  Identities=21%  Similarity=0.381  Sum_probs=24.5

Q ss_pred             CCCCCccccccccccCChhHHHHHhhhcC
Q 026210           60 LATNRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        60 ~~~~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      ..+.|-.|+.|+....+..+|++|+...+
T Consensus        20 ~s~qpatcpic~avirqsrnlrrhlel~h   48 (54)
T d1yuja_          20 QSEQPATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             TTSCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             cccCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            34678899999999999999999986543

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=90.29  E-value=0.075  Score=25.77  Aligned_cols=25  Identities=36%  Similarity=0.745  Sum_probs=14.3

Q ss_pred             CceeecccccccccchhhHHHHHHH
Q 026210          138 EKKYKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       138 ek~~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      +..|.|.+|.+.+...+++-+|..+
T Consensus         6 ~~~yRC~~C~r~YTHISNFCRHyvt   30 (37)
T d2drpa1           6 EHTYRCKVCSRVYTHISNFCRHYVT   30 (37)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHHH
T ss_pred             CcEEEeehhhHHHHHHHHHHHHHHh
Confidence            3445666666666666665555554

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.21  E-value=0.11  Score=23.80  Aligned_cols=17  Identities=41%  Similarity=0.929  Sum_probs=9.1

Q ss_pred             CCCCcCCcchHHHHHHh
Q 026210          172 CGTIFSRRDSFITHRAF  188 (241)
Q Consensus       172 C~k~f~~~~~L~~H~~~  188 (241)
                      |++.|....-|+-|.+.
T Consensus         8 c~kifsnrqylnhh~ky   24 (30)
T d2dlka1           8 CGRIFSNRQYLNHHKKY   24 (30)
T ss_dssp             TCCEESSHHHHHHHHHH
T ss_pred             chhhhccHHHHHhHHHH
Confidence            55555555555555443

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.12  E-value=0.072  Score=26.05  Aligned_cols=18  Identities=28%  Similarity=0.405  Sum_probs=16.3

Q ss_pred             ccccCChhHHHHHhhhcC
Q 026210           71 NKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        71 ~~~f~~~~~L~~H~~~h~   88 (241)
                      ++.|.....|..||+.|+
T Consensus        14 ~~pf~a~YkLv~H~R~HT   31 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHT   31 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHH
T ss_pred             CCcchhHHHHHHHHhhcC
Confidence            567999999999999997

>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: TBP-interacting protein-like
family: TBP-interacting protein-like
domain: TBP-interacting protein
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=88.38  E-value=0.11  Score=35.69  Aligned_cols=40  Identities=30%  Similarity=0.686  Sum_probs=28.0

Q ss_pred             hHhhhhcccc--CC-----ceeecccccccccchhhHHHHHHHhCCcc
Q 026210          127 GIKKHFSRKH--GE-----KKYKCERCSKKYAVQSDWKAHMKTCGTRE  167 (241)
Q Consensus       127 ~l~~H~~~h~--~e-----k~~~C~~C~k~f~~~~~L~~H~~~~~~k~  167 (241)
                      .|..|++...  |.     .-|+|..||| +..-.+|.+||+.||++.
T Consensus       126 rlieHiK~~m~~GqDyvFWQFYKCe~CgK-YvDie~~~~H~k~HG~~~  172 (218)
T d2czra1         126 ALVNHIKNNALAGQDYIFWQFYKCEECGK-YVDIENLEAHLREHGIKL  172 (218)
T ss_dssp             HHHHHHHTTCCBTTTEEEEEEEECTTTCC-EEEGGGHHHHHHTTTCCG
T ss_pred             HHHHHHHhccccCcceEEEEEeehhhcCc-eecHHHHHHHHHHcCcch
Confidence            3566655432  22     2489999996 466789999999998754

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.25  E-value=0.15  Score=24.87  Aligned_cols=22  Identities=23%  Similarity=0.526  Sum_probs=11.0

Q ss_pred             cceecC-CCCCcCCcchHHHHHH
Q 026210          166 REYKCD-CGTIFSRRDSFITHRA  187 (241)
Q Consensus       166 k~~~C~-C~k~f~~~~~L~~H~~  187 (241)
                      +.|.|+ |-|-......|.+|+.
T Consensus         6 kLyiCEfCLKYmks~~~l~RH~~   28 (33)
T d1m36a_           6 KLYLCEFCLKYMKSRTILQQHMK   28 (33)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHH
T ss_pred             eeeeehhhhhhhCCHHHHHHHHH
Confidence            345555 5555555555555544

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.17  E-value=0.14  Score=25.01  Aligned_cols=28  Identities=18%  Similarity=0.287  Sum_probs=21.8

Q ss_pred             cceecC-CCCCcCCcchHHHHHHhccCch
Q 026210          166 REYKCD-CGTIFSRRDSFITHRAFCDALA  193 (241)
Q Consensus       166 k~~~C~-C~k~f~~~~~L~~H~~~~~~~~  193 (241)
                      |...|- |-+.|....++.+|+-..|.+.
T Consensus         2 kkltclecmrtfkssfsiwrhqvevhnqn   30 (41)
T d1wjpa3           2 KKLTCLECMRTFKSSFSIWRHQVEVHNQN   30 (41)
T ss_dssp             GGGEEGGGTEECSSHHHHHHHHHHTSCCC
T ss_pred             CcccHHHHHHHHHHHHHHHHhhheecccc
Confidence            345687 8999999989999988777553

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.03  E-value=0.12  Score=29.36  Aligned_cols=34  Identities=24%  Similarity=0.526  Sum_probs=19.2

Q ss_pred             CceeecccccccccchhhHHHHHHH-hCCcceecC-CCC
Q 026210          138 EKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGT  174 (241)
Q Consensus       138 ek~~~C~~C~k~f~~~~~L~~H~~~-~~~k~~~C~-C~k  174 (241)
                      ...|+|+.|++.|.....+.-   . .....|.|. |+-
T Consensus        12 ~~~y~Cp~C~~~ys~Lda~~L---~d~~~~~F~C~~C~~   47 (62)
T d1vd4a_          12 RASFKCPVCSSTFTDLEANQL---FDPMTGTFRCTFCHT   47 (62)
T ss_dssp             SSEEECSSSCCEEEHHHHHHH---EETTTTEEBCSSSCC
T ss_pred             CCceECCCCCCCcchhhHHHh---cCcCCCeEEecCCCC
Confidence            445777777777666544321   2 234556776 764

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.28  E-value=0.25  Score=27.85  Aligned_cols=28  Identities=25%  Similarity=0.528  Sum_probs=25.3

Q ss_pred             CCCCccccccccccCChhHHHHHhhhcC
Q 026210           61 ATNRFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        61 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      ....|.|.+|+-.|.....|..|+..|.
T Consensus        15 ~s~~yQC~HCd~K~~s~~el~~hl~~hn   42 (75)
T d1x6fa1          15 QNSTYQCKHCDSKLQSTAELTSHLNIHN   42 (75)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCceeeechhHHHHhhHHHHHHHHHhcc
Confidence            4467999999999999999999999886

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=86.80  E-value=0.12  Score=23.13  Aligned_cols=17  Identities=24%  Similarity=0.520  Sum_probs=9.3

Q ss_pred             ccccccchhhHHHHHHH
Q 026210          146 CSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       146 C~k~f~~~~~L~~H~~~  162 (241)
                      |++.|....+|+.|+-+
T Consensus         9 c~kafkkhnqlkvhqf~   25 (28)
T d2j7ja1           9 CGKAFKKHNQLKVHQFS   25 (28)
T ss_dssp             CCCEESSHHHHHHHHHH
T ss_pred             chHHHhhccceEEEeec
Confidence            55555555555555543

>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: TBP-interacting protein-like
family: TBP-interacting protein-like
domain: TBP-interacting protein
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=86.27  E-value=0.11  Score=35.68  Aligned_cols=24  Identities=38%  Similarity=0.713  Sum_probs=21.0

Q ss_pred             CccccccccccCChhHHHHHhhhcC
Q 026210           64 RFVCEICNKGFQRDQNLQLHRRGHN   88 (241)
Q Consensus        64 ~~~C~~C~~~f~~~~~L~~H~~~h~   88 (241)
                      -|+|.+||+ +.+..+|..||+.|.
T Consensus       146 FYKCe~CgK-YvDie~~~~H~k~HG  169 (218)
T d2czra1         146 FYKCEECGK-YVDIENLEAHLREHG  169 (218)
T ss_dssp             EEECTTTCC-EEEGGGHHHHHHTTT
T ss_pred             EeehhhcCc-eecHHHHHHHHHHcC
Confidence            489999998 567889999999995

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.03  E-value=0.14  Score=29.18  Aligned_cols=39  Identities=15%  Similarity=0.424  Sum_probs=27.6

Q ss_pred             cCccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccccc
Q 026210          102 RKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKY  150 (241)
Q Consensus       102 ~~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k~f  150 (241)
                      ....|.|+.|       ++.|.....++.   .-...-.|.|..|+-..
T Consensus        11 ~~~~y~Cp~C-------~~~ys~Lda~~L---~d~~~~~F~C~~C~~el   49 (62)
T d1vd4a_          11 NRASFKCPVC-------SSTFTDLEANQL---FDPMTGTFRCTFCHTEV   49 (62)
T ss_dssp             SSSEEECSSS-------CCEEEHHHHHHH---EETTTTEEBCSSSCCBC
T ss_pred             cCCceECCCC-------CCCcchhhHHHh---cCcCCCeEEecCCCCEE
Confidence            5678999999       899877655443   33334569999998543

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.58  E-value=0.27  Score=24.74  Aligned_cols=26  Identities=35%  Similarity=0.663  Sum_probs=17.4

Q ss_pred             CccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccc
Q 026210          103 KKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSK  148 (241)
Q Consensus       103 ~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k  148 (241)
                      ++.|.|..|       |.             ++.++.|-+|.+|+.
T Consensus         3 ~~~~~C~vC-------G~-------------i~~g~~P~~CPvCg~   28 (37)
T d1nnqa2           3 KKVYICPIC-------GY-------------TAVDEAPEYCPVCGA   28 (37)
T ss_dssp             SCEEECTTT-------CC-------------EEESCCCSBCTTTCC
T ss_pred             CcEEECCCC-------CC-------------EecCCCCCcCCCCCC
Confidence            456788888       54             234566778888874

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.84  E-value=0.52  Score=22.83  Aligned_cols=24  Identities=38%  Similarity=0.570  Sum_probs=18.2

Q ss_pred             ceeecccccccccchhhHHHHHHH
Q 026210          139 KKYKCERCSKKYAVQSDWKAHMKT  162 (241)
Q Consensus       139 k~~~C~~C~k~f~~~~~L~~H~~~  162 (241)
                      +-|.|+.|-|-..+...|.+|+..
T Consensus         6 kLyiCEfCLKYmks~~~l~RH~~K   29 (33)
T d1m36a_           6 KLYLCEFCLKYMKSRTILQQHMKK   29 (33)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHH
T ss_pred             eeeeehhhhhhhCCHHHHHHHHHh
Confidence            457788888888888888888764

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.43  E-value=0.34  Score=23.64  Aligned_cols=26  Identities=23%  Similarity=0.506  Sum_probs=21.3

Q ss_pred             CCccccccccccCChhHHHHHhh-hcC
Q 026210           63 NRFVCEICNKGFQRDQNLQLHRR-GHN   88 (241)
Q Consensus        63 ~~~~C~~C~~~f~~~~~L~~H~~-~h~   88 (241)
                      +...|-+|-+.|.....+.+|+- .|.
T Consensus         2 kkltclecmrtfkssfsiwrhqvevhn   28 (41)
T d1wjpa3           2 KKLTCLECMRTFKSSFSIWRHQVEVHN   28 (41)
T ss_dssp             GGGEEGGGTEECSSHHHHHHHHHHTSC
T ss_pred             CcccHHHHHHHHHHHHHHHHhhheecc
Confidence            34679999999999999999964 453

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.51  E-value=0.49  Score=26.62  Aligned_cols=26  Identities=19%  Similarity=0.632  Sum_probs=15.2

Q ss_pred             ceeecccccccccchhhHHHHHHHhC
Q 026210          139 KKYKCERCSKKYAVQSDWKAHMKTCG  164 (241)
Q Consensus       139 k~~~C~~C~k~f~~~~~L~~H~~~~~  164 (241)
                      ..|.|..|+..|..-..|..|+..|.
T Consensus        17 ~~yQC~HCd~K~~s~~el~~hl~~hn   42 (75)
T d1x6fa1          17 STYQCKHCDSKLQSTAELTSHLNIHN   42 (75)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             ceeeechhHHHHhhHHHHHHHHHhcc
Confidence            34666666666666666666655554

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=80.50  E-value=0.41  Score=23.85  Aligned_cols=26  Identities=31%  Similarity=0.581  Sum_probs=17.5

Q ss_pred             CccccCCCCCcccCCCCCcCCChhhHhhhhccccCCceeecccccc
Q 026210          103 KKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSK  148 (241)
Q Consensus       103 ~~~~~C~~C~c~~~~~~~~f~~~~~l~~H~~~h~~ek~~~C~~C~k  148 (241)
                      ++.|.|..|       |.             +|.|+.|-+|.+||.
T Consensus         3 ~~~~vC~vC-------Gy-------------i~~g~~Pe~CPvCg~   28 (36)
T d1yuza2           3 DKFHLCPIC-------GY-------------IHKGEDFEKCPICFR   28 (36)
T ss_dssp             CCEEECSSS-------CC-------------EEESSCCSBCTTTCC
T ss_pred             CCEEECCCC-------CC-------------EeeCCCCCcCCCCCC
Confidence            456788888       53             344566777888874