Citrus Sinensis ID: 026216

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
Protein Sequence
MEGEKSSAGAGVGIPNYEVQASFTTAEAEAAAAAAAAQGMGSFVHDFDENHEHQVLSFMGAPPSNSHSHYSSPISLHPLIINSRHSTENSALGFTHTSNHDHHHQVGPLNPRAVNNENCTSNHASDEGHNSWWRSSSSSEKINKVKARRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSDHECFAHF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccEEEEEccccccccccccccccccccccccccccccEEcccccccccccEEccccccccEEEEEccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccEEEEEEccccccccccccHHHcccEEEccccccccEEEcccccccccEEEEEccccccEEEEEEccccccccccccccccccccccc
Coil and Loop (DISEMBL)
megekssagagvgipnyevqaSFTTAEAEAAAAAAAAQGMgsfvhdfdenhehqvlsfmgappsnshshysspislhpliinsrhstensalgfthtsnhdhhhqvgplnpravnnenctsnhasdeghnswwrsssssekINKVKARRklreprfcfqtrsdvdvlddgykwrkYGQKIvknslhprsyyrcthnncrVKKRVERLSEDCRMVITTyegrhnhspcddsnssdhecfahf
Flexible Loop (DISEMBL)
megekssagagvgipnYEVQASFTTAEAEAAAAAAAAQGMGSFVHDFDENHEHQVLSFMGAPPSNSHSHYSSPISLHPLIINSRHSTENSALGFTHTSNHDHHHQVGPLNPRAVNNENCTSnhasdeghnswwrsssssekinkvkarrklreprfcfqtrsdvdvlddgyKWRKYGQkivknslhprsyyrcthnncrvkkrverlsEDCRMVITtyegrhnhspcddsnssdhecfahf
Low Complexity Region (SEG)
MEGEKSSAGAGVGIPNYEVQASFTTaeaeaaaaaaaaQGMGSFVHDFDENHEHQVLSFMGAppsnshshysspislhpLIINSRHSTENSALGFTHTSNHDHHHQVGPLNPRAVNNENCTSNHASDEGHNswwrsssssEKINKVKARRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSDHECFAHF
Disordered region (IsUnstruct)
******************************************FVH************************************************************************************************************PRFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYE**********************
Disordered Region (DISOPRED)
*************************************************************************************************************************************************************FQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHN******************
Disordered Region (DISEMBL)
*********AGVGIPNYEVQASFTTA***********QGMGSFVHDFDENHEHQVLSFMGA**********SPISLHPLIINSRHSTENSALGFTHTSNHDHHHQVGPLNPRAVNNENCT****************************RKLREPRFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRH*******************
Disordered Region (DISPRO)
***********VGIP**E**ASF*T*****************************************************************************************************************************LREPRFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRH*******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGEKSSAGAGVGIPNYEVQASFTTAEAEAAAAAAAAQGMGSFVHDFDENHEHQVLSFMGAPPSNSHSHYSSPISLHPLIINSRHSTENSALGFTHTSNHDHHHQVGPLNPRAVNNENCTSNHASDEGHNSWWRSSSSSEKINKVKARRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSDHECFAHF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	241	2.2.26 [Sep-21-2011]
Q93WY4	218	Probable WRKY transcripti	yes	no	0.626	0.692	0.679	2e-56
Q9SVB7	304	Probable WRKY transcripti	no	no	0.452	0.358	0.672	1e-38
Q9C983	287	Probable WRKY transcripti	no	no	0.439	0.369	0.550	2e-29
Q8VWQ4	195	Probable WRKY transcripti	no	no	0.352	0.435	0.651	6e-27
Q8GY11	109	Probable WRKY transcripti	no	no	0.331	0.733	0.654	6e-27
Q8VWJ2	318	Probable WRKY transcripti	no	no	0.356	0.270	0.636	2e-26
Q9FFS3	179	Probable WRKY transcripti	no	no	0.365	0.491	0.617	2e-26
Q9FG77	687	Probable WRKY transcripti	no	no	0.311	0.109	0.657	2e-26
Q93WV0	557	Probable WRKY transcripti	no	no	0.381	0.165	0.548	5e-26
Q8S8P5	519	Probable WRKY transcripti	no	no	0.311	0.144	0.644	5e-26

>sp|Q93WY4|WRK12_ARATH Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1

 Score =  219 bits (557), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 108/159 (67%), Positives = 123/159 (77%), Gaps = 8/159 (5%)

Query: 86  STENSALGFTHTSNHDHHHQVGPLNPRAVNN--ENCTSNHASDEGHNSWWRSSSSSEKI- 142
           +T ++ LGF+     ++    GPL  + VN+  EN      +D   NSWWRS+S S  + 
Sbjct: 65  TTTHAPLGFS-----NNLQGGGPLGSKVVNDDQENFGGGTNNDAHSNSWWRSNSGSGDMK 119

Query: 143 NKVKARRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKK 202
           NKVK RRKLREPRFCFQT+SDVDVLDDGYKWRKYGQK+VKNSLHPRSYYRCTHNNCRVKK
Sbjct: 120 NKVKIRRKLREPRFCFQTKSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKK 179

Query: 203 RVERLSEDCRMVITTYEGRHNHSPCDDSNSSDHECFAHF 241
           RVERLSEDCRMVITTYEGRHNH P DDS S DH+C + F
Sbjct: 180 RVERLSEDCRMVITTYEGRHNHIPSDDSTSPDHDCLSSF 218

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVB7|WRK13_ARATH Probable WRKY transcription factor 13 OS=Arabidopsis thaliana GN=WRKY13 PE=2 SV=1

 Score =  159 bits (403), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/113 (67%), Positives = 90/113 (79%), Gaps = 4/113 (3%)

Query: 127 EGHNSWWRSSSSSEKINKVKARRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLH 186
           + HN+      SS K+ K+K RRK+REPRFCF+T S+VDVLDDGY+WRKYGQK+VKN+ H
Sbjct: 182 DKHNTASLGVVSSLKMKKLKTRRKVREPRFCFKTLSEVDVLDDGYRWRKYGQKVVKNTQH 241

Query: 187 PRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPC----DDSNSSDH 235
           PRSYYRCT + CRVKKRVERL++D RMVITTYEGRH HSP     DDS S+ H
Sbjct: 242 PRSYYRCTQDKCRVKKRVERLADDPRMVITTYEGRHLHSPSNHLDDDSLSTSH 294

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C983|WRK57_ARATH Probable WRKY transcription factor 57 OS=Arabidopsis thaliana GN=WRKY57 PE=2 SV=1

 Score =  129 bits (325), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/118 (55%), Positives = 84/118 (71%), Gaps = 12/118 (10%)

Query: 115 NNENCTSNHASDEGHNSWWRSSSSSEKI--------NKVKARRKLREPRFCFQTRSDVDV 166
           NN + TS+ + D   NS    ++S+EK          K KA++++R+PRF F T+SDVD 
Sbjct: 90  NNPSATSSSSEDPAENS----TASAEKTPPPETPVKEKKKAQKRIRQPRFAFMTKSDVDN 145

Query: 167 LDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNH 224
           L+DGY+WRKYGQK VKNS  PRSYYRCT++ C VKKRVER S+D  +VITTYEG+H H
Sbjct: 146 LEDGYRWRKYGQKAVKNSPFPRSYYRCTNSRCTVKKRVERSSDDPSIVITTYEGQHCH 203

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VWQ4|WRK56_ARATH Probable WRKY transcription factor 56 OS=Arabidopsis thaliana GN=WRKY56 PE=2 SV=1

 Score =  120 bits (302), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 68/86 (79%), Gaps = 1/86 (1%)

Query: 143 NKVKARRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKK 202
           NK K +R L   R  F TRSD DVLDDGY+WRKYGQK VKN+ HPRSYYRCT++ C VKK
Sbjct: 89  NKGKGKRTLAMQRIAFHTRSDDDVLDDGYRWRKYGQKSVKNNAHPRSYYRCTYHTCNVKK 148

Query: 203 RVERLSEDCRMVITTYEGRHNHSPCD 228
           +V+RL++D  +V+TTYEG HNH PC+
Sbjct: 149 QVQRLAKDPNVVVTTYEGVHNH-PCE 173

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY11|WRK43_ARATH Probable WRKY transcription factor 43 OS=Arabidopsis thaliana GN=WRKY43 PE=1 SV=1

 Score =  120 bits (302), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 53/81 (65%), Positives = 69/81 (85%), Gaps = 1/81 (1%)

Query: 149 RKLREPRFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLS 208
           +K++ PRF F+T+SD D+LDDGY+WRKYGQK VKNSL+PRSYYRCT + C VKK+V+RLS
Sbjct: 11  KKMKNPRFSFRTKSDADILDDGYRWRKYGQKSVKNSLYPRSYYRCTQHMCNVKKQVQRLS 70

Query: 209 EDCRMVITTYEGRHNHSPCDD 229
           ++  +V TTYEG HNH PC++
Sbjct: 71  KETSIVETTYEGIHNH-PCEE 90

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VWJ2|WRK28_ARATH Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/88 (63%), Positives = 67/88 (76%), Gaps = 2/88 (2%)

Query: 139 SEKINKVKAR--RKLREPRFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHN 196
           S+K+ K K    +K REPR  F T+S+VD L+DGY+WRKYGQK VKNS +PRSYYRCT  
Sbjct: 141 SKKVGKTKKTEVKKQREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQ 200

Query: 197 NCRVKKRVERLSEDCRMVITTYEGRHNH 224
            C VKKRVER  +D  +VITTYEG+HNH
Sbjct: 201 KCNVKKRVERSFQDPTVVITTYEGQHNH 228

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFS3|WRK24_ARATH Probable WRKY transcription factor 24 OS=Arabidopsis thaliana GN=WRKY24 PE=2 SV=1

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/89 (61%), Positives = 71/89 (79%), Gaps = 1/89 (1%)

Query: 140 EKINKVKARRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCR 199
           EK  ++K +R  + PR  F TRSD DVLDDGY+WRKYGQK VK++ HPRSYYRCT++ C 
Sbjct: 70  EKGKELKEKRSRKVPRIAFHTRSDDDVLDDGYRWRKYGQKSVKHNAHPRSYYRCTYHTCN 129

Query: 200 VKKRVERLSEDCRMVITTYEGRHNHSPCD 228
           VKK+V+RL++D  +V+TTYEG HNH PC+
Sbjct: 130 VKKQVQRLAKDPNVVVTTYEGVHNH-PCE 157

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG77|WRKY2_ARATH Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 50/76 (65%), Positives = 60/76 (78%)

Query: 149 RKLREPRFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLS 208
           R +REPR   QT SDVD+LDDGY+WRKYGQK+VK + +PRSYY+CT   C V+K VER S
Sbjct: 468 RAIREPRVVVQTTSDVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERAS 527

Query: 209 EDCRMVITTYEGRHNH 224
            D + VITTYEG+HNH
Sbjct: 528 HDLKSVITTYEGKHNH 543

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV0|WRK20_ARATH Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1

 Score =  118 bits (295), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 68/93 (73%)

Query: 149 RKLREPRFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLS 208
           + +REPR   QT S+VD+LDDGY+WRKYGQK+V+ + +PRSYY+CT + C V+K VER S
Sbjct: 362 KPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERAS 421

Query: 209 EDCRMVITTYEGRHNHSPCDDSNSSDHECFAHF 241
            D + VITTYEG+H+H      +SS+HE    F
Sbjct: 422 HDPKAVITTYEGKHDHDVPTSKSSSNHEIQPRF 454

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8P5|WRK33_ARATH Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2

 Score =  117 bits (294), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 49/76 (64%), Positives = 60/76 (78%)

Query: 149 RKLREPRFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLS 208
           + +REPR   QT SD+D+LDDGY+WRKYGQK+VK + +PRSYY+CT   C V+K VER S
Sbjct: 343 KTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERAS 402

Query: 209 EDCRMVITTYEGRHNH 224
            D R VITTYEG+HNH
Sbjct: 403 HDMRAVITTYEGKHNH 418

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
224137118	205	predicted protein [Populus trichocarpa]	0.821	0.965	0.631	1e-68
356520758	237	PREDICTED: probable WRKY transcription f	0.908	0.924	0.559	1e-66
351723729	225	transcription factor [Glycine max] gi|16	0.904	0.968	0.564	8e-65
356504553	238	PREDICTED: probable WRKY transcription f	0.892	0.903	0.584	1e-64
351721144	228	uncharacterized protein LOC100526878 [Gl	0.908	0.960	0.548	5e-64
358344171	515	WRKY transcription factor [Medicago trun	0.647	0.302	0.684	7e-63
338819019	227	STP [Medicago truncatula] gi|338819021|g	0.904	0.960	0.564	1e-62
225453346	228	PREDICTED: probable WRKY transcription f	0.900	0.951	0.599	3e-62
350540804	235	WRKY2, partial [Panax quinquefolius]	0.622	0.638	0.715	4e-56
449431940	219	PREDICTED: probable WRKY transcription f	0.560	0.616	0.748	5e-56

>gi|224137118|ref|XP_002327027.1| predicted protein [Populus trichocarpa] gi|222835342|gb|EEE73777.1| predicted protein [Populus trichocarpa]

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 144/228 (63%), Positives = 171/228 (75%), Gaps = 30/228 (13%)

Query: 14  IPNYEVQASFTTAEAEAAAAAAAAQGMGSFVHDFDENHEHQVLSFMGAPPSNSHSHYSSP 73
           +PNYE+  SF+T +A           MG FV  F+EN   QVLSF+   PS S S  S P
Sbjct: 8   VPNYELHVSFSTPQA--------IHEMG-FVQ-FEEN---QVLSFLA--PSQS-SQISQP 51

Query: 74  ISLHPLIINSRHSTENSALGFTHTSNHDHHHQVGPLNPRAVNNENCTSNHASDEGHNSWW 133
           ++ +    N+ H      +GF+H        QVG L+P+A ++ENCT N A+++G+NSWW
Sbjct: 52  LNANTTTTNNTH------MGFSHND-----QQVGALDPKASSDENCTGN-ANNDGNNSWW 99

Query: 134 RSSSSSEKINKVKARRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRC 193
           RSSS+ +  NK+K RRKLREPRFCFQTRS+VDVLDDGYKWRKYGQK+VKNSLHPRSYYRC
Sbjct: 100 RSSSADK--NKLKVRRKLREPRFCFQTRSEVDVLDDGYKWRKYGQKVVKNSLHPRSYYRC 157

Query: 194 THNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSDHECFAHF 241
           THNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSS+HECF+ F
Sbjct: 158 THNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSEHECFSSF 205

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520758|ref|XP_003529027.1| PREDICTED: probable WRKY transcription factor 12-like [Glycine max]

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 145/259 (55%), Positives = 175/259 (67%), Gaps = 40/259 (15%)

Query: 1   MEGEKSSAGAGVGIPNYEVQASFTTAEAEAAAAAAAAQGMGSFVHDFDENHEHQVLSFMG 60
           MEGE+  +      PN+E+Q SFT           A   MG FV  F+EN   QVLSF+ 
Sbjct: 1   MEGERGVS------PNFELQVSFTNT-------PQAIHEMG-FVQ-FEEN---QVLSFL- 41

Query: 61  APPS-------------NSHSHYSSPISLHPLIINSRHSTENSALGFTHT-----SNHDH 102
           AP +              S    ++  +     + +  S   + +GF+H      ++ ++
Sbjct: 42  APSAQSQSCQLSQSLNAGSSGSNTAVAATTTFTVTATTSGSGATIGFSHNDLVSRTSWNN 101

Query: 103 HHQVGPLNPRAVNNENCTSNHASDEGHNSWWRSSSSSEKINKVKARRKLREPRFCFQTRS 162
           + QV  L+P+AVN+ENCT N  SD G+N+WWRS+ S +  NK+K RRKLREPRFCFQTRS
Sbjct: 102 NEQVRTLDPKAVNDENCTGN-TSDGGNNTWWRSAGSEK--NKMKVRRKLREPRFCFQTRS 158

Query: 163 DVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRH 222
           DVDVLDDGYKWRKYGQK+VKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRH
Sbjct: 159 DVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRH 218

Query: 223 NHSPCDDSNSSDHECFAHF 241
           NHSPCDDSNSS+HECF  F
Sbjct: 219 NHSPCDDSNSSEHECFTSF 237

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723729|ref|NP_001237545.1| transcription factor [Glycine max] gi|166203230|gb|ABY84655.1| transcription factor [Glycine max]

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 140/248 (56%), Positives = 167/248 (67%), Gaps = 30/248 (12%)

Query: 1   MEGEKSSAGAGVGIPNYEVQASFTTAEAEAAAAAAAAQGMGSFVHDFDENHEHQVLSFMG 60
           ME E+       G PNYE+Q SFT           A   MG     F +  E+QVL F+ 
Sbjct: 1   MEAERG------GAPNYELQVSFTNT-------PQALHEMG-----FVQYEENQVLGFLS 42

Query: 61  APPSNSHSHYSSPISLHPLIINSRHSTENSALGF-------THTSNHDHHHQVGPLNPRA 113
               +  SH S  ++    ++    +T  + +GF       T T N+D   QVG L+P+ 
Sbjct: 43  PSSQSQSSHLSQSLNSDTGVVAVTATTPTATIGFMSHSGLVTKTWNND---QVGTLDPKP 99

Query: 114 VNNENCTSNHASDEGHNSWWRSSSSSEKINKVKARRKLREPRFCFQTRSDVDVLDDGYKW 173
           V +ENCT N +    +N+WWRS+++ +  NKVK RRKLREPRFCFQTRSDVDVLDDGYKW
Sbjct: 100 VEDENCTGNGSDQGNNNTWWRSAATEK--NKVKIRRKLREPRFCFQTRSDVDVLDDGYKW 157

Query: 174 RKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSS 233
           RKYGQK+VKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSS
Sbjct: 158 RKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSS 217

Query: 234 DHECFAHF 241
           ++ECF  F
Sbjct: 218 ENECFTSF 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504553|ref|XP_003521060.1| PREDICTED: probable WRKY transcription factor 12-like [Glycine max]

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 145/248 (58%), Positives = 170/248 (68%), Gaps = 33/248 (13%)

Query: 11  GVGIPNYEVQASFTTAEAEAAAAAAAAQGMGSFVHDFDENHEHQVLSFMGAPPSNSHSHY 70
           GV   NYE+Q SF       A    A   MG FV  F+EN   QVLSF+ AP + S S  
Sbjct: 7   GVNPNNYELQVSF-------ANTPQAIHEMG-FVQ-FEEN---QVLSFL-APSAQSQSSQ 53

Query: 71  ------------SSPISLHPLIINSRHSTENSALGFTHT-----SNHDHHHQVGPLNPRA 113
                       ++ ++       +  S   + +GF+H      +  +++ QV  L+P+A
Sbjct: 54  LSQSLNAGNGGSNTAVAAATTTATATTSGSGATIGFSHNDLVSRTCWNNNEQVRTLDPKA 113

Query: 114 VNNENCTSNHASDEGHNSWWRSSSSSEKINKVKARRKLREPRFCFQTRSDVDVLDDGYKW 173
           VN+ENCT N  SD G+NSWWRS+ S +  NK+K RRKLREPRFCFQTRSDVDVLDDGYKW
Sbjct: 114 VNDENCTGN-TSDGGNNSWWRSAGSEK--NKMKVRRKLREPRFCFQTRSDVDVLDDGYKW 170

Query: 174 RKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSS 233
           RKYGQK+VKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSS
Sbjct: 171 RKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSS 230

Query: 234 DHECFAHF 241
           +HECF  F
Sbjct: 231 EHECFTSF 238

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721144|ref|NP_001235408.1| uncharacterized protein LOC100526878 [Glycine max] gi|255631046|gb|ACU15887.1| unknown [Glycine max]

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 137/250 (54%), Positives = 165/250 (66%), Gaps = 31/250 (12%)

Query: 1   MEGEKSSAGAGVGIPNYEVQASFTTAEAEAAAAAAAAQGMGSFVHDFDENHEHQVLSFMG 60
           MEGE+       G PNYE+Q SFT           A   +G     F +  E+QVL F+ 
Sbjct: 1   MEGERG------GAPNYELQVSFTNT-------PQAIHELG-----FVQYEENQVLGFLS 42

Query: 61  APPSNSHSHYSSPISLHPLIINSRHSTENSAL--GFT-------HTSNHDHHHQVGPLNP 111
               +  S  S  +    L++ +  +   +A   GF         T N+D   +VG L+P
Sbjct: 43  PSSQSQSSPLSQSLKSDTLVVATATTAIAAAATIGFVSHSELAIKTWNNDQ--EVGTLDP 100

Query: 112 RAVNNENCTSNHASDEGHNSWWRSSSSSEKINKVKARRKLREPRFCFQTRSDVDVLDDGY 171
           + V  ENCT N +    +N+WWRS+++ +  NK+K RRKLREPRFCFQTRSDVDVLDDGY
Sbjct: 101 KPVEEENCTGNGSDQGNNNAWWRSAATEK--NKLKIRRKLREPRFCFQTRSDVDVLDDGY 158

Query: 172 KWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSN 231
           KWRKYGQK+VKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSN
Sbjct: 159 KWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSN 218

Query: 232 SSDHECFAHF 241
           SS++ECF  F
Sbjct: 219 SSENECFTSF 228

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344171|ref|XP_003636165.1| WRKY transcription factor [Medicago truncatula] gi|355502100|gb|AES83303.1| WRKY transcription factor [Medicago truncatula]

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 113/165 (68%), Positives = 129/165 (78%), Gaps = 9/165 (5%)

Query: 82  NSRHSTENSALGFTHTSNHDHHHQVGPLN-----PRAVNNENCTSNHASDEGHNSWWRSS 136
           N  H  + + +G            V P+N     P+AV++ENCT N  + +G+N+WWRS 
Sbjct: 355 NGHHKKKETEVGMVSAGAGQSMATVAPINVRTLDPKAVSDENCTGN--TSDGNNTWWRSG 412

Query: 137 SSSEKINKVKARRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHN 196
            + +  +KVK RRKLREPRFCFQTRSDVDVLDDGYKWRKYGQK+VKNSLHPRSYYRCTHN
Sbjct: 413 GAEK--SKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHN 470

Query: 197 NCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSDHECFAHF 241
           NCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSS+HECF  F
Sbjct: 471 NCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSEHECFTSF 515

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|338819019|gb|AEJ09955.1| STP [Medicago truncatula] gi|338819021|gb|AEJ09956.1| STP [Medicago truncatula]

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 141/250 (56%), Positives = 168/250 (67%), Gaps = 32/250 (12%)

Query: 1   MEGEKSSAGAGVGIPNYEVQASFTTAEAEAAAAAAAAQGMGSFVHDFDENHEHQVLSFMG 60
           M+GE+        +PNY++Q SFT           A   MG FV  F+EN   QVLSF+ 
Sbjct: 1   MDGERD-------VPNYDLQVSFTNT-------PQAIHEMG-FVQ-FEEN---QVLSFLS 41

Query: 61  APPSNSHSHY----SSPISLHPLIINSRHSTENSALGFTH-----TSNHDHHHQVGPLNP 111
               +  S      +S          +  +T   A GF+H     T    ++ QV  L+P
Sbjct: 42  PSTQSQPSQLSQSLNSGRGTTNATTGAAVTTTTVAAGFSHNDLVTTRTPWNNEQVRTLDP 101

Query: 112 RAVNNENCTSNHASDEGHNSWWRSSSSSEKINKVKARRKLREPRFCFQTRSDVDVLDDGY 171
           +AV++ENCT N  + +G+N+WWRS  + +  +KVK RRKLREPRFCFQTRSDVDVLDDGY
Sbjct: 102 KAVSDENCTGN--TSDGNNTWWRSGGAEK--SKVKVRRKLREPRFCFQTRSDVDVLDDGY 157

Query: 172 KWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSN 231
           KWRKYGQK+VKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSN
Sbjct: 158 KWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSN 217

Query: 232 SSDHECFAHF 241
           SS+HECF  F
Sbjct: 218 SSEHECFTSF 227

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453346|ref|XP_002270527.1| PREDICTED: probable WRKY transcription factor 12 [Vitis vinifera] gi|297734631|emb|CBI16682.3| unnamed protein product [Vitis vinifera]

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 142/237 (59%), Positives = 164/237 (69%), Gaps = 20/237 (8%)

Query: 9   GAGVGIPNYEVQASFTTAEAEAAAAAAAAQGMGSFVHDFDENHEHQVLSFMGAPPSNSHS 68
           G   G+PNYE+Q S++T              MG FV  F+EN   QVLSF+    S   S
Sbjct: 8   GERSGVPNYELQVSYSTT-------PQGIHEMG-FVQ-FEEN---QVLSFLAPSQSAQMS 55

Query: 69  HYSSPISLHPLIINSRHSTENSALGFTH----TSNHDHHHQVGPLNPRAVNNENCTSNHA 124
              +  S         ++T N+ +GFTH    T    ++ QVG L+P+AVN ENCT N  
Sbjct: 56  QPLNTASTSTPTPTPTNTTTNTTMGFTHNDLLTRPSWNNEQVGTLDPKAVNEENCTGN-- 113

Query: 125 SDEGHNSWWRSSSSSEKINKVKARRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKIVKNS 184
           +++G NS     SSS +  KVKARRKLREPRFCFQTRS+VDVLDDGYKWRKYGQK+VKNS
Sbjct: 114 ANDGSNS--WWRSSSSEKTKVKARRKLREPRFCFQTRSEVDVLDDGYKWRKYGQKVVKNS 171

Query: 185 LHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSDHECFAHF 241
           LHPRSYYRCTH NCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSS+HECF  F
Sbjct: 172 LHPRSYYRCTHTNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSEHECFTSF 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350540804|gb|AEQ29015.1| WRKY2, partial [Panax quinquefolius]

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 113/158 (71%), Positives = 126/158 (79%), Gaps = 8/158 (5%)

Query: 89  NSALGFTHTS-----NHDHHHQVGPLNPRAVNNENCTSNHASDEGHNSWWRSSSSSEKIN 143
           N +LGF H       + D+  QVG L+ +A N E C+ N AS++ H SWWRSS S +   
Sbjct: 81  NWSLGFNHIEHLERPSWDNEQQVGRLDAKAANEEKCSGN-ASEDNH-SWWRSSCSDKGRV 138

Query: 144 KVKARRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKR 203
           K+  RRKLREPRFCFQTRSDVDVLDDGYKWRKYGQK+VKNSLHPRSYYRCTHNNCRVKKR
Sbjct: 139 KL-VRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKR 197

Query: 204 VERLSEDCRMVITTYEGRHNHSPCDDSNSSDHECFAHF 241
           VERLSEDCRMVITTYEGRHNH PCDDSN S++ECF  F
Sbjct: 198 VERLSEDCRMVITTYEGRHNHIPCDDSNYSENECFTSF 235

Source: Panax quinquefolius

Species: Panax quinquefolius

Genus: Panax

Family: Araliaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449431940|ref|XP_004133758.1| PREDICTED: probable WRKY transcription factor 12-like [Cucumis sativus] gi|449478050|ref|XP_004155207.1| PREDICTED: probable WRKY transcription factor 12-like [Cucumis sativus]

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 104/139 (74%), Positives = 120/139 (86%), Gaps = 4/139 (2%)

Query: 103 HHQVGPLNPRAVNNENCTSNHASDEGHNSWWRSSSSSEKINKVKARRKLREPRFCFQTRS 162
           H   G L+P+  N+ENCT+   + +  NSWWR++++ +  +KVK RRKLREPRFCFQTRS
Sbjct: 85  HQLPGTLDPKPGNDENCTA--TATDATNSWWRNTNADK--SKVKVRRKLREPRFCFQTRS 140

Query: 163 DVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRH 222
           DVDVLDDGYKWRKYGQK+VKNSLHPRSYYRCTH+NCRVKKRVERLSEDCRMVITTYEGRH
Sbjct: 141 DVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRH 200

Query: 223 NHSPCDDSNSSDHECFAHF 241
           NH+PCDDSNSS+HE F  F
Sbjct: 201 NHTPCDDSNSSEHEPFTSF 219

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
TAIR|locus:505006317	218	WRKY12 "WRKY DNA-binding prote	0.643	0.711	0.625	1.2e-49
TAIR|locus:2122496	304	WRKY13 "WRKY DNA-binding prote	0.551	0.437	0.555	1.1e-37
TAIR|locus:2007081	287	WRKY57 "AT1G69310" [Arabidopsi	0.456	0.383	0.535	1.5e-28
TAIR|locus:2024583	195	WRKY56 "WRKY DNA-binding prote	0.406	0.502	0.555	3.1e-28
TAIR|locus:2157829	399	WRKY48 "WRKY DNA-binding prote	0.336	0.203	0.666	3.2e-28
TAIR|locus:2160512	179	WRKY24 "WRKY DNA-binding prote	0.365	0.491	0.617	5e-28
TAIR|locus:2062949	109	WRKY43 "WRKY DNA-binding prote	0.331	0.733	0.654	8.2e-28
TAIR|locus:2141872	318	WRKY28 "WRKY DNA-binding prote	0.352	0.267	0.632	5.2e-26
TAIR|locus:2019382	282	WRKY71 "WRKY DNA-binding prote	0.452	0.386	0.531	1.1e-25
TAIR|locus:2102147	423	WRKY58 "WRKY DNA-binding prote	0.315	0.179	0.644	2.2e-25

TAIR|locus:505006317 WRKY12 "WRKY DNA-binding protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 102/163 (62%), Positives = 116/163 (71%)

Query:    82 NSRHSTENSALGFTHTSNHDHHHQVGPLNPRAVNN--ENCTSNHASDEGHNXX-XXXXXX 138
             +S  +T ++ LGF++          GPL  + VN+  EN      +D   N         
Sbjct:    61 SSSTTTTHAPLGFSNNLQGG-----GPLGSKVVNDDQENFGGGTNNDAHSNSWWRSNSGS 115

Query:   139 XEKINKVKARRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNC 198
              +  NKVK RRKLREPRFCFQT+SDVDVLDDGYKWRKYGQK+VKNSLHPRSYYRCTHNNC
Sbjct:   116 GDMKNKVKIRRKLREPRFCFQTKSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNC 175

Query:   199 RVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSDHECFAHF 241
             RVKKRVERLSEDCRMVITTYEGRHNH P DDS S DH+C + F
Sbjct:   176 RVKKRVERLSEDCRMVITTYEGRHNHIPSDDSTSPDHDCLSSF 218

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

TAIR|locus:2122496 WRKY13 "WRKY DNA-binding protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 80/144 (55%), Positives = 101/144 (70%)

Query:   101 DHHHQVGPLNPRAVNNENCTSNHASD-----EGHNXXXXXXXXXEKINKVKARRKLREPR 155
             D+  +VG  +   +N+++   +H  D     + HN          K+ K+K RRK+REPR
Sbjct:   153 DNDDEVG--DGGGINDDDNGRHHHHDTPSRHDKHNTASLGVVSSLKMKKLKTRRKVREPR 210

Query:   156 FCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVI 215
             FCF+T S+VDVLDDGY+WRKYGQK+VKN+ HPRSYYRCT + CRVKKRVERL++D RMVI
Sbjct:   211 FCFKTLSEVDVLDDGYRWRKYGQKVVKNTQHPRSYYRCTQDKCRVKKRVERLADDPRMVI 270

Query:   216 TTYEGRHNHSPC----DDSNSSDH 235
             TTYEGRH HSP     DDS S+ H
Sbjct:   271 TTYEGRHLHSPSNHLDDDSLSTSH 294

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2007081 WRKY57 "AT1G69310" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 61/114 (53%), Positives = 77/114 (67%)

Query:   115 NNENCTSNHASDEGHNXXXXXXXX----XEKINKVKARRKLREPRFCFQTRSDVDVLDDG 170
             NN + TS+ + D   N                 K KA++++R+PRF F T+SDVD L+DG
Sbjct:    90 NNPSATSSSSEDPAENSTASAEKTPPPETPVKEKKKAQKRIRQPRFAFMTKSDVDNLEDG 149

Query:   171 YKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNH 224
             Y+WRKYGQK VKNS  PRSYYRCT++ C VKKRVER S+D  +VITTYEG+H H
Sbjct:   150 YRWRKYGQKAVKNSPFPRSYYRCTNSRCTVKKRVERSSDDPSIVITTYEGQHCH 203

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

TAIR|locus:2024583 WRKY56 "WRKY DNA-binding protein 56" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 60/108 (55%), Positives = 77/108 (71%)

Query:   121 SNHASDEGHNXXXXXXXXXEKINKVKARRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKI 180
             SN++++  HN         +  NK K +R L   R  F TRSD DVLDDGY+WRKYGQK 
Sbjct:    76 SNNSNNSDHN---------KNCNKGKGKRTLAMQRIAFHTRSDDDVLDDGYRWRKYGQKS 126

Query:   181 VKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCD 228
             VKN+ HPRSYYRCT++ C VKK+V+RL++D  +V+TTYEG HNH PC+
Sbjct:   127 VKNNAHPRSYYRCTYHTCNVKKQVQRLAKDPNVVVTTYEGVHNH-PCE 173

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2157829 WRKY48 "WRKY DNA-binding protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
 Identities = 54/81 (66%), Positives = 64/81 (79%)

Query:   144 KVKARRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKR 203
             K K ++K RE RF F T+SD+D LDDGY+WRKYGQK VKNS +PRSYYRCT   C VKKR
Sbjct:   197 KKKNQKKAREARFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKR 256

Query:   204 VERLSEDCRMVITTYEGRHNH 224
             VER S+D  +V+TTYEG+H H
Sbjct:   257 VERSSDDPSIVMTTYEGQHTH 277

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0003677 "DNA binding" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2160512 WRKY24 "WRKY DNA-binding protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 55/89 (61%), Positives = 71/89 (79%)

Query:   140 EKINKVKARRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCR 199
             EK  ++K +R  + PR  F TRSD DVLDDGY+WRKYGQK VK++ HPRSYYRCT++ C 
Sbjct:    70 EKGKELKEKRSRKVPRIAFHTRSDDDVLDDGYRWRKYGQKSVKHNAHPRSYYRCTYHTCN 129

Query:   200 VKKRVERLSEDCRMVITTYEGRHNHSPCD 228
             VKK+V+RL++D  +V+TTYEG HNH PC+
Sbjct:   130 VKKQVQRLAKDPNVVVTTYEGVHNH-PCE 157

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2062949 WRKY43 "WRKY DNA-binding protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 53/81 (65%), Positives = 69/81 (85%)

Query:   149 RKLREPRFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLS 208
             +K++ PRF F+T+SD D+LDDGY+WRKYGQK VKNSL+PRSYYRCT + C VKK+V+RLS
Sbjct:    11 KKMKNPRFSFRTKSDADILDDGYRWRKYGQKSVKNSLYPRSYYRCTQHMCNVKKQVQRLS 70

Query:   209 EDCRMVITTYEGRHNHSPCDD 229
             ++  +V TTYEG HNH PC++
Sbjct:    71 KETSIVETTYEGIHNH-PCEE 90

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2141872 WRKY28 "WRKY DNA-binding protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 55/87 (63%), Positives = 66/87 (75%)

Query:   140 EKINKVKAR--RKLREPRFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNN 197
             +K+ K K    +K REPR  F T+S+VD L+DGY+WRKYGQK VKNS +PRSYYRCT   
Sbjct:   142 KKVGKTKKTEVKKQREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQK 201

Query:   198 CRVKKRVERLSEDCRMVITTYEGRHNH 224
             C VKKRVER  +D  +VITTYEG+HNH
Sbjct:   202 CNVKKRVERSFQDPTVVITTYEGQHNH 228

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2019382 WRKY71 "WRKY DNA-binding protein 71" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 59/111 (53%), Positives = 71/111 (63%)

Query:   116 NENCTSNHASD-EGH-NXXXXXXXXXEKINKVKARRKLREPRFCFQTRSDVDVLDDGYKW 173
             N N  S+   D EG  +          K  K K  +K RE R  F T+S++D L+DGY+W
Sbjct:    82 NTNDKSDQMEDNEGDLHGVGESSKQLTKQGKKKGEKKEREVRVAFMTKSEIDHLEDGYRW 141

Query:   174 RKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNH 224
             RKYGQK VKNS +PRSYYRCT   C VKKRVER  +D  +VITTYEG+HNH
Sbjct:   142 RKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPSIVITTYEGKHNH 192

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2102147 WRKY58 "WRKY DNA-binding protein 58" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 49/76 (64%), Positives = 61/76 (80%)

Query:   149 RKLREPRFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLS 208
             R + EP+   QT+S+VD+LDDGY+WRKYGQK+VK + HPRSYY+CT  NC V+K VER S
Sbjct:   287 RTVTEPKIIVQTKSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTTPNCTVRKHVERAS 346

Query:   209 EDCRMVITTYEGRHNH 224
              D + VITTYEG+HNH
Sbjct:   347 TDAKAVITTYEGKHNH 362

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93WY4	WRK12_ARATH	No assigned EC number	0.6792	0.6265	0.6926	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	241
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	2e-34
smart00774	59	smart00774, WRKY, DNA binding domain	7e-33

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  117 bits (295), Expect = 2e-34
 Identities = 40/60 (66%), Positives = 44/60 (73%)

Query: 167 LDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSP 226
           LDDGY WRKYGQK VK S  PRSYYRCT   C VKK+VER S+D ++V  TYEG HNH  
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHPK 60

Length = 60

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  113 bits (285), Expect = 7e-33
 Identities = 35/59 (59%), Positives = 44/59 (74%), Gaps = 1/59 (1%)

Query: 167 LDDGYKWRKYGQKIVKNSLHPRSYYRCTHN-NCRVKKRVERLSEDCRMVITTYEGRHNH 224
           LDDGY+WRKYGQK++K S +PRSYYRCT+   C  KK+V+R  +D  +V  TYEG H H
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	241
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.97
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.96
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	92.36
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	88.9

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.97  E-value=4.5e-32  Score=196.88  Aligned_cols=59  Identities=64%  Similarity=1.173  Sum_probs=52.5

Q ss_pred             CCCCccccccCcccccCCCCCcccccccCCCCccccceeeecCCCCeEEEEEeecCCCC
Q 026216          167 LDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHS  225 (241)
Q Consensus       167 ~dDGy~WRKYGQK~Ikgs~~PRsYYRCT~~gC~AkKqVQr~~~D~~~~~tTY~G~HnH~  225 (241)
                      ++|||+|||||||.|+|+++||+||||++.+|+|+|+|||+.+|+.+++|||+|+|||+
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            58999999999999999999999999999999999999999999999999999999997

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.96  E-value=5.9e-31  Score=191.59  Aligned_cols=58  Identities=60%  Similarity=1.123  Sum_probs=56.5

Q ss_pred             CCCCccccccCcccccCCCCCcccccccC-CCCccccceeeecCCCCeEEEEEeecCCC
Q 026216          167 LDDGYKWRKYGQKIVKNSLHPRSYYRCTH-NNCRVKKRVERLSEDCRMVITTYEGRHNH  224 (241)
Q Consensus       167 ~dDGy~WRKYGQK~Ikgs~~PRsYYRCT~-~gC~AkKqVQr~~~D~~~~~tTY~G~HnH  224 (241)
                      ++|||.|||||||.|+|+++||+||||++ ++|+|+|+|||+++|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            48999999999999999999999999999 89999999999989999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.36  E-value=0.045  Score=37.17  Aligned_cols=49  Identities=27%  Similarity=0.668  Sum_probs=25.1

Q ss_pred             cCCCCccccccCcccccCCCCCcccccccCC---CCccccceeeecCCCCeEEEEEeecCCC
Q 026216          166 VLDDGYKWRKYGQKIVKNSLHPRSYYRCTHN---NCRVKKRVERLSEDCRMVITTYEGRHNH  224 (241)
Q Consensus       166 ~~dDGy~WRKYGQK~Ikgs~~PRsYYRCT~~---gC~AkKqVQr~~~D~~~~~tTY~G~HnH  224 (241)
                      ++-|||.-++....      ....|+||+..   +|+|+=.+.  .++.  .++...++|||
T Consensus        11 L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~--~~~~~~~~HnH   62 (62)
T PF04500_consen   11 LVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDG--RVVRTNGEHNH   62 (62)
T ss_dssp             EEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TT--EEEE-S---SS
T ss_pred             EEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCC--EEEECCCccCC
Confidence            56788876654444      45689999984   899987666  2343  44445599998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=88.90  E-value=0.36  Score=35.63  Aligned_cols=31  Identities=29%  Similarity=0.618  Sum_probs=26.2

Q ss_pred             CCCccccceeeecCCCCeEEEEEeecCCCCCC
Q 026216          196 NNCRVKKRVERLSEDCRMVITTYEGRHNHSPC  227 (241)
Q Consensus       196 ~gC~AkKqVQr~~~D~~~~~tTY~G~HnH~~~  227 (241)
                      -+|+|+=.|.+.. |+...++.+..+|||+.+
T Consensus        60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L~   90 (91)
T PF03101_consen   60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPLC   90 (91)
T ss_pred             cCCCEEEEEEEcc-CCEEEEEECcCCcCCCCC
Confidence            4899998888755 788889999999999853

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	241
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		1e-21
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		3e-19

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 54/67 (80%)
Query: 158 FQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITT 217
            QT S+VD+LDDGY+WRKYGQK+VK + +PRSYY+CT   C V+K VER + D + V+TT
Sbjct: 8   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 67
Query: 218 YEGRHNH 224
           YEG+HNH
Sbjct: 68  YEGKHNH 74

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 53/70 (75%)
Query: 155 RFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMV 214
           R    T++  D+++DGY+WRKYGQK VK S +PRSYYRC+   C VKK VER S D +++
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61
Query: 215 ITTYEGRHNH 224
           ITTYEG+H+H
Sbjct: 62  ITTYEGKHDH 71
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	241
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	3e-43
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	4e-40

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  139 bits (353), Expect = 3e-43
 Identities = 42/75 (56%), Positives = 54/75 (72%)

Query: 152 REPRFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLSEDC 211
                  QT S+VD+LDDGY+WRKYGQK+VK + +PRSYY+CT   C V+K VER + D 
Sbjct: 2   SSGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDP 61

Query: 212 RMVITTYEGRHNHSP 226
           + V+TTYEG+HNH  
Sbjct: 62  KAVVTTYEGKHNHDL 76

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  131 bits (332), Expect = 4e-40
 Identities = 40/72 (55%), Positives = 53/72 (73%)

Query: 155 RFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMV 214
           R    T++  D+++DGY+WRKYGQK VK S +PRSYYRC+   C VKK VER S D +++
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 215 ITTYEGRHNHSP 226
           ITTYEG+H+H  
Sbjct: 62  ITTYEGKHDHDM 73

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	241
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0
2rpr_A	87	Flywch-type zinc finger-containing protein 1; flyw	83.48

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=2.3e-35  Score=223.05  Aligned_cols=74  Identities=54%  Similarity=0.979  Sum_probs=71.4

Q ss_pred             ceEEeecCccccCCCCccccccCcccccCCCCCcccccccCCCCccccceeeecCCCCeEEEEEeecCCCCCCC
Q 026216          155 RFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCD  228 (241)
Q Consensus       155 r~~~qt~s~~~~~dDGy~WRKYGQK~Ikgs~~PRsYYRCT~~gC~AkKqVQr~~~D~~~~~tTY~G~HnH~~~~  228 (241)
                      |++|+|.+++++++|||.|||||||.|+|+++||+||||++.+|+|+|+|||+.+|+.+++|||+|+|||+.+.
T Consensus         2 r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            2 RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             EEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             eEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999763

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=1.8e-35  Score=224.68  Aligned_cols=74  Identities=57%  Similarity=0.978  Sum_probs=68.7

Q ss_pred             CceEEeecCccccCCCCccccccCcccccCCCCCcccccccCCCCccccceeeecCCCCeEEEEEeecCCCCCC
Q 026216          154 PRFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPC  227 (241)
Q Consensus       154 pr~~~qt~s~~~~~dDGy~WRKYGQK~Ikgs~~PRsYYRCT~~gC~AkKqVQr~~~D~~~~~tTY~G~HnH~~~  227 (241)
                      .+++|+|.+++++++|||.|||||||.|+|+++||+||||++++|+|+|+|||+++|+.+++|||+|+|||+.+
T Consensus         4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   77 (78)
T 1wj2_A            4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   77 (78)
T ss_dssp             ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999976

>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}

Probab=83.48  E-value=0.6  Score=34.16  Aligned_cols=52  Identities=17%  Similarity=0.340  Sum_probs=33.5

Q ss_pred             ccccCCCCccccccCcccccCCCCCcccccccC---CCCccccceeeecCCCCeEEEEEeecCCCCCC
Q 026216          163 DVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTH---NNCRVKKRVERLSEDCRMVITTYEGRHNHSPC  227 (241)
Q Consensus       163 ~~~~~dDGy~WRKYGQK~Ikgs~~PRsYYRCT~---~gC~AkKqVQr~~~D~~~~~tTY~G~HnH~~~  227 (241)
                      ...++-|||.-.+--+      ...+.|.+|+.   .+|+|+=....   +.    +.-.+.|||+|.
T Consensus        20 ~~~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~---~~----~~~~~~HnH~p~   74 (87)
T 2rpr_A           20 GRFLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG---HR----IMVMRSHCHQPD   74 (87)
T ss_dssp             EEEEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET---TE----EEECSCCSSCCC
T ss_pred             CcEEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC---CC----EECCCCcCCCCc
Confidence            3357789997664221      13368999997   38999754332   21    235789999874

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	241
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	2e-32

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  110 bits (277), Expect = 2e-32
 Identities = 42/68 (61%), Positives = 54/68 (79%)

Query: 159 QTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTY 218
           QT S+VD+LDDGY+WRKYGQK+VK + +PRSYY+CT   C V+K VER + D + V+TTY
Sbjct: 2   QTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTY 61

Query: 219 EGRHNHSP 226
           EG+HNH  
Sbjct: 62  EGKHNHDL 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	241
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	100.0

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.4e-35  Score=218.18  Aligned_cols=71  Identities=59%  Similarity=1.049  Sum_probs=67.2

Q ss_pred             EeecCccccCCCCccccccCcccccCCCCCcccccccCCCCccccceeeecCCCCeEEEEEeecCCCCCCC
Q 026216          158 FQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCD  228 (241)
Q Consensus       158 ~qt~s~~~~~dDGy~WRKYGQK~Ikgs~~PRsYYRCT~~gC~AkKqVQr~~~D~~~~~tTY~G~HnH~~~~  228 (241)
                      ++|.+++++++|||.|||||||.|+|+++||+||||++.+|+|+|+|||+.+||.+++|||+|+|||++|+
T Consensus         1 v~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           1 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             CccccccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            35678889999999999999999999999999999999999999999999999999999999999998764