Citrus Sinensis ID: 026240

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
Protein Sequence
MAPREKASGPAKVNGNSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPLPSENVTNKISHNNININNNNQSPSQSSTIESSSREPALMIDSSPLDLNLGPACAGGGAGGGFNATVRFPFQPVGGAFGAANQVFYFDPVAAMKSQQYQRLRFDHHRNYNFHAAAVTAVGDGSVQSDSDSSSIVDLNHHDDKPRRVLDIDLNLPPEDFA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccEEcccccccEEEEcccccccccEEEcccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHcccccccccccccccccccEEEEEEEcccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEcccccccccccccccccHHHHHHHccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccEEccccccccccccEEEEcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
maprekasgpakvngnsngivkevhfrgvrkrpwgryaaeirdpgkksrvwlgTFDTAEEAARAYDAAAREFRgakaktnfplpsenvtnkishnnininnnnqspsqsstiesssrepalmidsspldlnlgpacagggagggfnatvrfpfqpvggafgaanqvfyfdpvaamkSQQYQRLRFDHHRNYNFHAAAVtavgdgsvqsdsdsssivdlnhhddkprrvldidlnlppedfa
Flexible Loop (DISEMBL)
maprekasgpakvngnsngivkevhfrgvrkrpwgryaaeirdpgkksrvwLGTFDTAEEAARAYDAAAREFRgakaktnfplpsenvTNKISHNNIninnnnqspsqSSTIESSSREPALMIDSSPLDLNLGPACAGGGAGGGFNATVRFPFQPVGGAFGAANQVFYFDPVAAMKSQQYQRLRFDHHRNYNFHAAAVTAVGDGSVQSDSDSSSIvdlnhhddkprrvldidlnlppedfa
Low Complexity Region (SEG)
MAPREKASGPAKVNGNSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTaeeaaraydaaarefrGAKAKTNFPLPSENVTNKISHnnininnnnQspsqsstiesssREPALMIDSSPLDLNLgpacagggagggFNATVRFPFQPVGGAFGAANQVFYFDPVAAMKSQQYQRLRFDHHRNYNFHAAAVTAvgdgsvqsdsdsssivdLNHHDDKPRRVLDIDLNLPPEDFA
Disordered region (IsUnstruct)
*******************IVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYD**************************************************************DLNLGPACAGGGAGGGFNATVRFPFQPVGGAFGAANQVFYFDPVAAMKSQQYQRLRFDHHRNYNFHAAAVTAVG***************************************
Disordered Region (DISOPRED)
*****************************RKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPL*****************************************************************************GAANQVFYFDPVAAMKSQ********************************************DKPRRVLDIDLNLPPE***
Disordered Region (DISEMBL)
************VNGNSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPLPSENVTNKISHNNININNNN***************PALMIDSSPLDLNLGPACAGGGAGGGFNATVRFPFQPVGGAFGAANQVFYFDPVAAMKSQQYQRLRFDHHRNYNFHAAAVTAV*************IVDLNHHDDKPRRVLDIDLNLPPEDFA
Disordered Region (DISPRO)
**********************EVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPLPSEN*****************************************D*NL*PACAGGGAGGGFNATVRFPFQPVGGAFGAANQVFYFDPVAAMKSQQYQRLRFDHHRNYNFHAAAVTAVGDGSVQSDSDSSSIVDLNHHDDKPRRVLDIDLNLP*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAPREKASGPAKVNGNSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPLPSENVTNKISHNNININNNNQSPSQSSTIESSSREPALMIDSSPLDLNLGPACAGGGAGGGFNATVRFPFQPVGGAFGAANQVFYFDPVAAMKSQQYQRLRFDHHRNYNFHAAAVTAVGDGSVQSDSDSSSIVDLNHHDDKPRRVLDIDLNLPPEDFA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	241	2.2.26 [Sep-21-2011]
Q9LW49	227	Ethylene-responsive trans	N/A	no	0.900	0.955	0.456	1e-37
Q40477	225	Ethylene-responsive trans	N/A	no	0.809	0.866	0.475	3e-36
Q9FE67	200	Ethylene-responsive trans	yes	no	0.560	0.675	0.526	2e-32
O80340	222	Ethylene-responsive trans	no	no	0.452	0.490	0.615	4e-31
O80339	225	Ethylene-responsive trans	no	no	0.315	0.337	0.740	5e-26
Q94ID6	189	Ethylene-responsive trans	no	no	0.282	0.359	0.779	3e-25
Q9ZWA2	245	Ethylene-responsive trans	no	no	0.742	0.730	0.350	3e-24
Q9C5I3	166	Ethylene-responsive trans	no	no	0.319	0.463	0.698	4e-24
Q9LDE4	244	Ethylene-responsive trans	no	no	0.307	0.303	0.72	8e-24
Q9SAD4	328	Ethylene-responsive trans	no	no	0.427	0.314	0.508	3e-23

>sp|Q9LW49|ERF4_NICSY Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1

 Score =  156 bits (394), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/250 (45%), Positives = 137/250 (54%), Gaps = 33/250 (13%)

Query: 1   MAPREKASGPAKVNGN--SNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTA 58
           MA + K S      GN  +NG VKEVH+RGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTA
Sbjct: 1   MAVKNKVSNGDLKGGNVKTNG-VKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTA 59

Query: 59  EEAARAYDAAAREFRGAKAKTNFPLPSENVTNKISHNNININNNNQSPSQSSTIESSSRE 118
           EEAA+AYD AAREFRG KAKTNFPLPSEN        + + ++  +S S  + I +    
Sbjct: 60  EEAAKAYDTAAREFRGPKAKTNFPLPSEN-------QSTSHSSTMESSSGETGIHAPPHA 112

Query: 119 PALMIDSSPLDLNLGPACAGGGAGGGFNATVRFPF---QPVGGAFGAANQVFYFD----P 171
           P L +D   L   LG   A GG     +  V +P    QP          V  FD    P
Sbjct: 113 P-LELD---LTRRLGSVAADGGDNCRRSGEVGYPIFHQQPTVAVLPNGQPVLLFDSLWRP 168

Query: 172 VAAMKSQQYQRLRFDHHRNYNFHAAAVTAVGDGSVQSDSDSSSIVDLNHHDDKPRRVLDI 231
               + Q Y  +           A     V  G   + SDSSS+V+ N +D K  R +D+
Sbjct: 169 GVVNRPQPYHVMPM---------AMGFNGVNAGVDPTVSDSSSVVEENQYDGK--RGIDL 217

Query: 232 DLNL-PPEDF 240
           DLNL PP +F
Sbjct: 218 DLNLAPPTEF 227

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs.
Nicotiana sylvestris (taxid: 4096)

>sp|Q40477|ERF4_TOBAC Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1

 Score =  151 bits (382), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 109/229 (47%), Positives = 131/229 (57%), Gaps = 34/229 (14%)

Query: 21  VKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGAKAKTN 80
           VKEVH+RGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAA+AYD AAREFRG KAKTN
Sbjct: 22  VKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTN 81

Query: 81  FPLPSENVTNKISHNNININNNNQSPSQSSTIESSSREPALMIDS-SPLDLN----LGPA 135
           FP P+E                NQSPS SST+ESSS E  +     +PL+L+    LG  
Sbjct: 82  FPSPTE----------------NQSPSHSSTVESSSGENGVHAPPHAPLELDLTRRLGSV 125

Query: 136 CAGGGAGGGFNATVRFPF---QPVGGAFGAANQVFYFDPVAAMKSQQYQRLRFDHHRNYN 192
            A GG     +  V +P    QP          V  FD +       ++    +  + Y+
Sbjct: 126 AADGGDNCRRSGEVGYPIFHQQPTVAVLPNGQPVLLFDSL-------WRAGVVNRPQPYH 178

Query: 193 FHAAAVTAVGDGSVQSDSDSSSIVDLNHHDDKPRRVLDIDLNL-PPEDF 240
                   V  G   + SDSSS V+ N +D K  R +D+DLNL PP +F
Sbjct: 179 VTPMGFNGVNAGVGPTVSDSSSAVEENQYDGK--RGIDLDLNLAPPMEF 225

Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs.

Nicotiana tabacum (taxid: 4097)

>sp|Q9FE67|ERF80_ARATH Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1

 Score =  139 bits (350), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/152 (52%), Positives = 94/152 (61%), Gaps = 17/152 (11%)

Query: 1   MAPREKASGPAKVNGNSNG-------IVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLG 53
           MAPR+       V+    G       + KEVHFRGVRKRPWGRYAAEIRDPGKK+RVWLG
Sbjct: 1   MAPRQANGRSIAVSEGGGGKTMTMTTMRKEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLG 60

Query: 54  TFDTAEEAARAYDAAAREFRGAKAKTNFPLPSENVTNKISHNNININNNNQSPSQSSTIE 113
           TFDTAEEAARAYD AAREFRG+KAKTNFPLP E+ T       +N    N S    +T+ 
Sbjct: 61  TFDTAEEAARAYDTAAREFRGSKAKTNFPLPGESTT-------VNDGGENDSYVNRTTV- 112

Query: 114 SSSREPALMIDSSPLDLNLGPACAGGGAGGGF 145
           +++RE  +     P   +      GG A  GF
Sbjct: 113 TTARE--MTRQRFPFACHRERKVVGGYASAGF 142

Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|O80340|ERF78_ARATH Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1

 Score =  135 bits (339), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 72/117 (61%), Positives = 84/117 (71%), Gaps = 8/117 (6%)

Query: 10  PAKVNGNSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAA 69
           PA  N   N   KE+ +RGVRKRPWGRYAAEIRDPGKK+RVWLGTFDTAEEAARAYD AA
Sbjct: 10  PATTNQTHNN-AKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAA 68

Query: 70  REFRGAKAKTNFPLPSENVTNKISHNNININNNNQSPSQSSTIESSSREPALMIDSS 126
           R+FRGAKAKTNFP   E    K+           +SPSQSST++ +S  P L++ S+
Sbjct: 69  RDFRGAKAKTNFPTFLELSDQKVP------TGFARSPSQSSTLDCAS-PPTLVVPSA 118

Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways, and could also regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|O80339|ERF82_ARATH Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1

 Score =  118 bits (295), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 64/77 (83%), Gaps = 1/77 (1%)

Query: 7  ASGPAKVNGNSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYD 66
           +GP  V    NG VKE+ FRGVRKRPWGR+AAEIRDP KK+RVWLGTFD+AEEAARAYD
Sbjct: 10 VAGPTVVAA-INGSVKEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYD 68

Query: 67 AAAREFRGAKAKTNFPL 83
          +AAR  RG KAKTNFP+
Sbjct: 69 SAARNLRGPKAKTNFPI 85

Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94ID6|ERF81_ARATH Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1

 Score =  115 bits (288), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/68 (77%), Positives = 56/68 (82%)

Query: 17 SNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGAK 76
          S    +EVH+RGVRKRPWGRYAAEIRDP KK+RVWLGTFDT EEAA AYD AAR  RG K
Sbjct: 3  STTCAREVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIK 62

Query: 77 AKTNFPLP 84
          AKTNFP P
Sbjct: 63 AKTNFPSP 70

Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWA2|ERF77_ARATH Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1

 Score =  112 bits (279), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/234 (35%), Positives = 115/234 (49%), Gaps = 55/234 (23%)

Query: 22  KEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNF 81
           KEV +RGVR+RPWGRYAAEIRDP KK RVWLG+F+T EEAARAYD+AA  FRG+KA TNF
Sbjct: 49  KEVRYRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNF 108

Query: 82  PL-----------PSENVTNKISHNNINI-----NNNNQSPSQSSTIESSSREPALMIDS 125
           PL            + N++  +S  N N+     + N  +   ++T+  ++R+  L  D 
Sbjct: 109 PLIGYYGISSATPVNNNLSETVSDGNANLPLVGDDGNALASPVNNTLSETARDGTLPSDC 168

Query: 126 SPLDLNLGPACAGGGAGGGFNATVRFPFQPVGGAFGAANQVFYFD--PVAAMKSQQYQRL 183
             +   L P  A   AG                        F+ D   V A+K ++  R+
Sbjct: 169 HDM---LSPGVAEAVAG------------------------FFLDLPEVIALK-EELDRV 200

Query: 184 RFDHHRNYNFHAAAVTAVGDGSVQSDSDSSSIVDLNHHDDKPRRVLDIDLNLPP 237
             D   + +        +G  +   + ++SS VD      K R   D+DLN  P
Sbjct: 201 CPDQFESIDMG----LTIGPQTAVEEPETSSAVDC-----KLRMEPDLDLNASP 245

Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5I3|ERF76_ARATH Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1

 Score =  111 bits (278), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 58/83 (69%), Positives = 60/83 (72%), Gaps = 6/83 (7%)

Query: 1  MAPREKASGPAKVNGNSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEE 60
          MAP  K +      GN       V +RGVRKRPWGRYAAEIRDP KKSRVWLGTFDT EE
Sbjct: 1  MAPTVKTAAVKTNEGNG------VRYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEE 54

Query: 61 AARAYDAAAREFRGAKAKTNFPL 83
          AARAYD  A EFRGAKAKTNFP 
Sbjct: 55 AARAYDKRAIEFRGAKAKTNFPC 77

Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LDE4|ERF83_ARATH Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1

 Score =  110 bits (275), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 54/75 (72%), Positives = 61/75 (81%), Gaps = 1/75 (1%)

Query: 9  GPAKVNGNSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAA 68
          GPA +   + G VKE  +RGVRKRPWGR+AAEIRDP KKSRVWLGTFD+A +AARAYD A
Sbjct: 11 GPA-LPVTAGGSVKEPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTA 69

Query: 69 AREFRGAKAKTNFPL 83
          AR  RG KAKTNFP+
Sbjct: 70 ARNLRGPKAKTNFPI 84

Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAD4|ESR1_ARATH Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana GN=ESR1 PE=1 SV=1

 Score =  108 bits (271), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/112 (50%), Positives = 71/112 (63%), Gaps = 9/112 (8%)

Query: 24  VHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPL 83
             +RGVR+RPWGRYAAEIRDP  K R WLGTFDTAE+AA AYD+AAR FRGAKA+TNF  
Sbjct: 55  TRYRGVRRRPWGRYAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKARTNFTY 114

Query: 84  PSENVTNKISHNNININNNNQSPSQSSTIESSSREPALMIDSSPLDLNLGPA 135
           P+  +   +     + +N   SPS    +      P+L +DSS  +    PA
Sbjct: 115 PTAVI---MPEPRFSFSNKKSSPSARCPL------PSLPLDSSTQNFYGAPA 157

Regulates gene expression patterns in meristems and thus modulates organ development. Required for correct embryon patterning and cotyledon organogenesis. Modulates auxin signaling pathway in early embryos. Involved in the cytokinin signaling pathway that promotes shoot regeneration. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
297740417	227	unnamed protein product [Vitis vinifera]	0.875	0.929	0.629	3e-51
37625035	249	putative ethylene response factor ERF3a	0.887	0.859	0.595	2e-50
225443624	249	PREDICTED: ethylene-responsive transcrip	0.887	0.859	0.595	2e-50
224077076	236	AP2/ERF domain-containing transcription	0.863	0.881	0.546	3e-49
321158527	242	ethylene response factor 6b [Nicotiana t	0.929	0.925	0.462	3e-49
28274832	222	ethylene response factor 3 [Solanum lyco	0.858	0.932	0.512	4e-48
118490009	223	ethylene response factor 3 [Solanum tube	0.867	0.937	0.510	8e-48
292668927	272	AP2 domain class transcription factor [M	0.771	0.683	0.599	5e-46
350537749	210	ethylene response factor 2 [Solanum lyco	0.809	0.928	0.519	2e-45
341604895	243	ethylene-responsive element binding prot	0.925	0.917	0.629	2e-44

>gi|297740417|emb|CBI30599.3| unnamed protein product [Vitis vinifera]

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 156/248 (62%), Positives = 175/248 (70%), Gaps = 37/248 (14%)

Query: 1   MAPREKASGPAKVNGNSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEE 60
           MAP+EK +G  K + N+    KEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEE
Sbjct: 1   MAPKEKVAG-VKPSANA----KEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEE 55

Query: 61  AARAYDAAAREFRGAKAKTNFPLPSENVTNKISHNNININNNNQSPSQSSTIESSSRE-- 118
           AA+AYD+AAREFRGAKAKTNFPL SE           N+NNNNQSPSQSST+ESSSRE  
Sbjct: 56  AAKAYDSAAREFRGAKAKTNFPLVSE-----------NLNNNNQSPSQSSTVESSSREGF 104

Query: 119 -PALMIDSSPLDLNLGPACAGGGAG-GGFNATVRFP---FQPVGGAFGAANQVFYFDPV- 172
            PALM+DSSPLDLNL     GGG G   F  +   P     P GG   AAN +FYFD + 
Sbjct: 105 SPALMVDSSPLDLNL---LHGGGVGHHQFQVSSPSPAAGIVPTGG-LPAANHLFYFDAML 160

Query: 173 -AAMKSQQYQRLRFDHHRNYNFHAAAVTAVGDGSVQSDSDSSSIVDLNHHDDKPR-RVL- 229
                +Q +QRLRFD   + +F AA       G VQSDSDSSS+VDLNH+D KPR RVL 
Sbjct: 161 RTGRVNQDFQRLRFDRAAS-DFRAALT-----GGVQSDSDSSSVVDLNHNDLKPRARVLI 214

Query: 230 DIDLNLPP 237
           D+DLN PP
Sbjct: 215 DLDLNRPP 222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37625035|gb|AAQ96341.1| putative ethylene response factor ERF3a [Vitis aestivalis]

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 159/267 (59%), Positives = 179/267 (67%), Gaps = 53/267 (19%)

Query: 1   MAPREKASGPAKVNGNSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEE 60
           MAP+EK +G   V  ++N   KEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEE
Sbjct: 1   MAPKEKVAG---VKPSANA--KEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEE 55

Query: 61  AARAYDAAAREFRGAKAKTNFPLPSENVTNKISHNNININNNNQSPSQSSTIESSSRE-- 118
           AA+AYD+AAREFRGAKAKTNFPL SE           N+NNNNQSPSQSST+ESSSRE  
Sbjct: 56  AAKAYDSAAREFRGAKAKTNFPLVSE-----------NLNNNNQSPSQSSTVESSSREGF 104

Query: 119 -PALMIDSSPLDLNL-------GPACAGGGAGGGFNATVRFPFQ---------------- 154
            PALM+DSSPLDLNL            G GA  G+   +RFPFQ                
Sbjct: 105 SPALMVDSSPLDLNLLHGGGVGVGVGVGVGAAAGYATAMRFPFQHHQFQVSSPSPAAGIV 164

Query: 155 PVGGAFGAANQVFYFDPV--AAMKSQQYQRLRFDHHRNYNFHAAAVTAVGDGSVQSDSDS 212
           P GG   AAN +FYFD +      +Q +QRLRFD   + +F AA       G VQSDSDS
Sbjct: 165 PTGG-LPAANHLFYFDAMLRTGRVNQDFQRLRFDRAAS-DFRAALT-----GGVQSDSDS 217

Query: 213 SSIVDLNHHDDKPR-RVL-DIDLNLPP 237
           SS+VDLNH+D KPR RVL D+DLN PP
Sbjct: 218 SSVVDLNHNDLKPRARVLIDLDLNRPP 244

Source: Vitis aestivalis

Species: Vitis aestivalis

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443624|ref|XP_002279692.1| PREDICTED: ethylene-responsive transcription factor 4 [Vitis vinifera] gi|147805535|emb|CAN74093.1| hypothetical protein VITISV_023706 [Vitis vinifera]

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 159/267 (59%), Positives = 179/267 (67%), Gaps = 53/267 (19%)

Query: 1   MAPREKASGPAKVNGNSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEE 60
           MAP+EK +G   V  ++N   KEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEE
Sbjct: 1   MAPKEKVAG---VKPSANA--KEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEE 55

Query: 61  AARAYDAAAREFRGAKAKTNFPLPSENVTNKISHNNININNNNQSPSQSSTIESSSRE-- 118
           AA+AYD+AAREFRGAKAKTNFPL SE           N+NNNNQSPSQSST+ESSSRE  
Sbjct: 56  AAKAYDSAAREFRGAKAKTNFPLVSE-----------NLNNNNQSPSQSSTVESSSREGF 104

Query: 119 -PALMIDSSPLDLNL-------GPACAGGGAGGGFNATVRFPFQ---------------- 154
            PALM+DSSPLDLNL            G GA  G+   +RFPFQ                
Sbjct: 105 SPALMVDSSPLDLNLLHGGGVGVGVGVGVGAAAGYATALRFPFQHHQFQVSSPSPAAGIV 164

Query: 155 PVGGAFGAANQVFYFDPV--AAMKSQQYQRLRFDHHRNYNFHAAAVTAVGDGSVQSDSDS 212
           P GG   AAN +FYFD +      +Q +QRLRFD   + +F AA       G VQSDSDS
Sbjct: 165 PTGG-LPAANHLFYFDAMLRTGRVNQDFQRLRFDRAAS-DFRAALT-----GGVQSDSDS 217

Query: 213 SSIVDLNHHDDKPR-RVL-DIDLNLPP 237
           SS+VDLNH+D KPR RVL D+DLN PP
Sbjct: 218 SSVVDLNHNDLKPRARVLIDLDLNRPP 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077076|ref|XP_002305121.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222848085|gb|EEE85632.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 142/260 (54%), Positives = 159/260 (61%), Gaps = 52/260 (20%)

Query: 1   MAPREKASG---PAKVNGNSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDT 57
           MAPREK +             G  KEVHFRGVRKRPWGRYAAEIRDP KKSRVWLGTFDT
Sbjct: 1   MAPREKTAAVKASGGGIVGGGGGGKEVHFRGVRKRPWGRYAAEIRDPSKKSRVWLGTFDT 60

Query: 58  AEEAARAYDAAAREFRGAKAKTNFPLPS-ENVTNKISHNNININNNN------------- 103
           AEEAARAYD AAREFRG+KAKTNFP PS ENV      N ++I++N              
Sbjct: 61  AEEAARAYDTAAREFRGSKAKTNFPYPSCENVKK----NVLSIDSNKKAASKNNSGGGGG 116

Query: 104 -----QSPSQSSTIESSSREPALMIDSSPLDLNLGPACAGGGAGGGFNATVRFPFQPVGG 158
                QSPSQSST+E  S +       +PLDLNLGPA           +TVR PFQP+  
Sbjct: 117 GGGNNQSPSQSSTVEFCSSD-------APLDLNLGPAV----------STVRLPFQPMA- 158

Query: 159 AFGAANQVFYFDPVAAMKSQQYQRLRFDHHRNYNFHAAAVTAVGDGSVQSDSDSSSIVDL 218
                 QV YFD  A MKS QY+R+ FDH   Y+ H         G V SDSDSSS+VDL
Sbjct: 159 --MNQQQVVYFD--AFMKS-QYRRMVFDH--GYHHHPNQPVIFSCGGVLSDSDSSSVVDL 211

Query: 219 NHHDDK-PRRVLDIDLNLPP 237
           NH D K PRR +D+DLNLPP
Sbjct: 212 NHQDVKTPRRSVDLDLNLPP 231

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|321158527|dbj|BAJ72666.1| ethylene response factor 6b [Nicotiana tabacum]

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 118/255 (46%), Positives = 156/255 (61%), Gaps = 31/255 (12%)

Query: 1   MAPREKASGPAKVN---GNSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDT 57
           M+P+EK +         G  NG+ KE+H+RGVRKRPWGRYAAEIRDPGKKSRVWLGTFDT
Sbjct: 1   MSPKEKGTAAMATVTAAGKVNGVSKEMHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDT 60

Query: 58  AEEAARAYDAAAREFRGAKAKTNFPLPSENVTNKISHNNININNNNQSPSQSSTIESS-- 115
           AE+AARAYD AAREFRGAKAKTNFP+        I   N+ + N N SPSQSST+E+S  
Sbjct: 61  AEDAARAYDTAAREFRGAKAKTNFPI--------IEPENVKLANRNCSPSQSSTVENSPP 112

Query: 116 ----SREPALMIDSSPLDLNLGPACA--GGGAGGGFNATVRFPFQPVGGAFGAA----NQ 165
               +  PA+M+D+SPLDL+LG + +    G G       +F   PV G         N 
Sbjct: 113 VMPENSPPAVMLDTSPLDLSLGGSRSLFSNGVGRVLFQNHQFHGSPVAGGIAGCITPVNH 172

Query: 166 VFYFDPVAAMKSQQYQRLRFDHHRNYNFHAAAVTAVGDGSVQSDSDSSSIVDLNHHDDKP 225
           ++Y + +      Q +R+   + ++    A  +   G G+   +SDSSS++D   HD KP
Sbjct: 173 MYYLEAL------QRERVISSYKKSCRKTAEFIAGCGGGA-SGESDSSSVIDFMGHDLKP 225

Query: 226 -RRVLDIDLNLPPED 239
             R +++DLNLPP +
Sbjct: 226 ITRPINLDLNLPPPE 240

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28274832|gb|AAO34705.1| ethylene response factor 3 [Solanum lycopersicum]

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 127/248 (51%), Positives = 153/248 (61%), Gaps = 41/248 (16%)

Query: 1   MAPREKASG-PAKVNGNSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAE 59
           MAP+EK     A    N NGI KEVH+RGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAE
Sbjct: 1   MAPKEKIGAVTAMAMVNLNGISKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAE 60

Query: 60  EAARAYDAAAREFRGAKAKTNFP---LPSENVTNKISHNNININNNNQSPSQSSTIESSS 116
           EAARAYD AAREFRGAKAKTNFP   +  E        N I     N+SP Q+ST+ESSS
Sbjct: 61  EAARAYDNAAREFRGAKAKTNFPKLEMEKEEDLKFAVKNEI-----NRSPGQTSTVESSS 115

Query: 117 REPALMIDSSPLDLNLGPACAGGGAGGGFN-ATVRFPFQPVG--GAFGAANQVFYFDPVA 173
             P ++  SSPLDL+L   C   G+ GGFN  TV+FP    G  G+  A N+++Y + +A
Sbjct: 116 --PVMVDSSSPLDLSL---C---GSIGGFNHHTVKFPSSGGGFTGSVQAVNRMYYIEALA 167

Query: 174 ---AMKSQQYQRLRFDHHRNYNFHAAAVTAVGDGSVQSDSDSSSIVDLNHHDDKPRRV-L 229
               +K +Q  R R D+             +G G    DSDSS+++D    D K     L
Sbjct: 168 RAGVIKLEQIGRKRLDY-------------LGGG----DSDSSTVIDFMRVDVKSTTAGL 210

Query: 230 DIDLNLPP 237
           ++DLN PP
Sbjct: 211 NLDLNFPP 218

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118490009|gb|ABK96798.1| ethylene response factor 3 [Solanum tuberosum]

 Score =  196 bits (497), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 126/247 (51%), Positives = 153/247 (61%), Gaps = 38/247 (15%)

Query: 1   MAPREK----ASGPAKVNGNSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFD 56
           MAP+EK     +      G  NGI KEVH+RGVRKRPWGRYAAEIRDPGKKSRVWLGTFD
Sbjct: 1   MAPKEKIGAVTAAAVMAVGKLNGISKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFD 60

Query: 57  TAEEAARAYDAAAREFRGAKAKTNFP--LPSENVTNKISHNNININNNNQSPSQSSTIES 114
           TAEEAA+AYD AAREFRGAKAKTNFP  L  E++   +       N  N+SPSQ+ST+ES
Sbjct: 61  TAEEAAKAYDNAAREFRGAKAKTNFPQLLKEEDLKFPVK------NEINRSPSQTSTVES 114

Query: 115 SSREPALMIDSSPLDLNLGPACAGGGAGGGFNA-TVRFPFQPVG--GAFGAANQVFYFDP 171
           SS  P ++  SSPLDL L   C   G+ GGFN  TVRFP    G  GA  A N ++Y D 
Sbjct: 115 SS--PVMVDSSSPLDLRL---C---GSIGGFNHNTVRFPISGGGFTGAVPAVNHMYYLD- 165

Query: 172 VAAMKSQQYQRLRFDHHRNYNFHAAAVTAVGDGSVQSDSDSSSIVDLNHHDDKPRRV-LD 230
             A++      L  +  +  +F       +G G    DSD+S+++D    D KP    L+
Sbjct: 166 --ALERAGVINLETNRKKTVDF-------LGGG----DSDTSTVIDFMRVDVKPTIAGLN 212

Query: 231 IDLNLPP 237
           +DLN PP
Sbjct: 213 LDLNFPP 219

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668927|gb|ADE41118.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 136/227 (59%), Positives = 151/227 (66%), Gaps = 41/227 (18%)

Query: 1   MAPREKASGPAKVNGNSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEE 60
           MAPREK +   +VNGN N  VKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEE
Sbjct: 1   MAPREKTATAVRVNGNGN--VKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEE 58

Query: 61  AARAYDAAAREFRGAKAKTNFPLPSENVTNKISH----------------NNININNNNQ 104
           AA AYD AAR+FRGAKAKTNFPL SENV+  I+                 N I+  +NNQ
Sbjct: 59  AALAYDNAARDFRGAKAKTNFPLLSENVSLSITKNNNINNININNNINNNNKISSGSNNQ 118

Query: 105 SPSQSSTIESSSRE-PALMIDSSPLDLNLGPACAGGGAGGGFNATVRFPFQ----PVGGA 159
           SPSQSST+ESSSRE PALM+DSSP DLNL    + GG G   +A +RFPFQ    P  G 
Sbjct: 119 SPSQSSTVESSSREPPALMVDSSPFDLNLAHGVSSGGFG---SAPMRFPFQHHQVPGIGP 175

Query: 160 F--------GAANQVFYFDPV---AAMKSQQY-QRLRFDHHRNYNFH 194
           F         AAN + YFD V     +K+ Q  QRLRFD     NFH
Sbjct: 176 FIGVPASSAAAANHMLYFDSVFRAGMLKNHQIQQRLRFDQ---ANFH 219

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350537749|ref|NP_001233796.1| ethylene response factor 2 [Solanum lycopersicum] gi|30526297|gb|AAP32202.1| ethylene response factor 2 [Solanum lycopersicum] gi|45642988|gb|AAS72388.1| ethylene response factor 3 [Solanum lycopersicum]

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/229 (51%), Positives = 145/229 (63%), Gaps = 34/229 (14%)

Query: 16  NSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGA 75
           N NGI KEVH+RGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYD AAREFRGA
Sbjct: 5   NLNGISKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDNAAREFRGA 64

Query: 76  KAKTNFP---LPSENVTNKISHNNININNNNQSPSQSSTIESSSREPALMIDSSPLDLNL 132
           KAKTNFP   +  E        N I     N+SPSQ+ST+ESSS  P ++  SSPLDL+L
Sbjct: 65  KAKTNFPKLEMEKEEDLKFAVKNEI-----NRSPSQTSTVESSS--PVMVDSSSPLDLSL 117

Query: 133 GPACAGGGAGGGFN-ATVRFPFQPVG--GAFGAANQVFYFDPVAAMKSQQYQRLRFDHHR 189
              C   G+ GGFN  TV+FP    G  G+  A N ++Y + +A     +   ++ + +R
Sbjct: 118 ---C---GSIGGFNHHTVKFPSSGGGFTGSVQAVNHMYYIEALA-----RAGVIKLETNR 166

Query: 190 NYNFHAAAVTAVGDGSVQSDSDSSSIVDLNHHDDKPRRV-LDIDLNLPP 237
                   V  +G G    DSDSS+++D    D K     L++DLN PP
Sbjct: 167 K-----KTVDYLGGG----DSDSSTVIDFMRVDVKSTTAGLNLDLNFPP 206

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|341604895|gb|AEK82608.1| ethylene-responsive element binding protein 1 [Hevea brasiliensis]

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 160/254 (62%), Positives = 176/254 (69%), Gaps = 31/254 (12%)

Query: 1   MAPREKASGPAKVNGNSNGI-VKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAE 59
           MAPR+K +   K NGN     VKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAE
Sbjct: 1   MAPRDKTAA-VKANGNCGAAGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAE 59

Query: 60  EAARAYDAAAREFRGAKAKTNFPLPSENVTNKISHNNIN-INNNNQSPSQSSTIESSSRE 118
           EAARAYDAAAREFRGAKAKTNFP   ENV   I  N  N    NN SPS SST+ESSSRE
Sbjct: 60  EAARAYDAAAREFRGAKAKTNFPPADENVNKNIIVNKKNDTGANNHSPSPSSTVESSSRE 119

Query: 119 -PALMID-SSPLDLNLGPACAGGGAGGGFNATVRFPFQP---VGGAF----GAANQVFYF 169
            PALM++ SSPLDLNLG + A           VRFPFQP   VGG F    G   +VFYF
Sbjct: 120 TPALMMESSSPLDLNLGRSAA-----------VRFPFQPVPAVGGVFTAPVGNHQRVFYF 168

Query: 170 DPVAAMKSQQYQRLRFDHH-RNYNFHAAAVTAV---GDGSVQSDSDSSSIVDLNHHD-DK 224
           D   AM   QYQRL FDH  +  + H  A++     G G VQSDSDSSS+VDLN H+ + 
Sbjct: 169 D---AMVKSQYQRLLFDHQNKRQHLHDQAMSTAGNGGGGGVQSDSDSSSVVDLNQHEINP 225

Query: 225 PRRVLDIDLNLPPE 238
           PR+ LD DLNLPP+
Sbjct: 226 PRKSLDFDLNLPPK 239

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
TAIR|locus:2167659	200	ERF9 "erf domain protein 9" [A	0.369	0.445	0.552	4.1e-29
TAIR|locus:2087065	222	ERF4 "ethylene responsive elem	0.298	0.324	0.616	1e-23
UNIPROTKB|Q5MFV2	235	BIERF2 "BTH-induced ERF transc	0.601	0.617	0.358	2e-21
TAIR|locus:2032500	166	ERF11 "ERF domain protein 11"	0.315	0.457	0.585	3.2e-21
TAIR|locus:2032510	189	ERF12 "ERF domain protein 12"	0.282	0.359	0.617	5.2e-21
TAIR|locus:2009655	185	ERF8 "ethylene response factor	0.298	0.389	0.541	1.5e-19
TAIR|locus:2008021	225	ERF3 "ethylene responsive elem	0.327	0.351	0.562	3.1e-19
TAIR|locus:2092339	244	ERF7 "ethylene response factor	0.307	0.303	0.573	1.2e-17
TAIR|locus:2183861	212	Rap2.6L "related to AP2 6l" [A	0.290	0.330	0.5	4.8e-17
TAIR|locus:2024249	245	ERF10 "ERF domain protein 10"	0.257	0.253	0.596	7.7e-16

TAIR|locus:2167659 ERF9 "erf domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 4.1e-29, Sum P(3) = 4.1e-29
 Identities = 53/96 (55%), Positives = 59/96 (61%)

Query:     1 MAPREKASGPAKVNGNSNG-------IVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLG 53
             MAPR+       V+    G       + KEVHFRGVRKRPWGRYAAEIRDPGKK+RVWLG
Sbjct:     1 MAPRQANGRSIAVSEGGGGKTMTMTTMRKEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLG 60

Query:    54 TFDTXXXXXXXXXXXXXXXXGAKAKTNFPLPSENVT 89
             TFDT                G+KAKTNFPLP E+ T
Sbjct:    61 TFDTAEEAARAYDTAAREFRGSKAKTNFPLPGESTT 96

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=TAS

GO:0016020 "membrane" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2087065 ERF4 "ethylene responsive element binding factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
 Identities = 45/73 (61%), Positives = 48/73 (65%)

Query:    10 PAKVNGNSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXX 69
             PA  N   N   KE+ +RGVRKRPWGRYAAEIRDPGKK+RVWLGTFDT            
Sbjct:    10 PATTNQTHNN-AKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAA 68

Query:    70 XXXXGAKAKTNFP 82
                 GAKAKTNFP
Sbjct:    69 RDFRGAKAKTNFP 81

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0010105 "negative regulation of ethylene mediated signaling pathway" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0016604 "nuclear body" evidence=IDA

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

UNIPROTKB|Q5MFV2 BIERF2 "BTH-induced ERF transcriptional factor 2" [Oryza sativa Indica Group (taxid:39946)]

 Score = 229 (85.7 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
 Identities = 56/156 (35%), Positives = 72/156 (46%)

Query:    25 HFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPLP 84
             H+RGVRKRPWGRYAAEIRDP KKSRVWLGT+DT                GAKAKTNFP  
Sbjct:    33 HYRGVRKRPWGRYAAEIRDPAKKSRVWLGTYDTAEEAARAYDAAAREFRGAKAKTNFPFA 92

Query:    85 SENVTNKISHXXXXXXXXXQXXXXXXXXXXXXREPALMIDSSP-LDLNLXXXXXXXXXXX 143
             S+++                            + P   +   P LDL+L           
Sbjct:    93 SQSMVG--------CGGSPSSNSTVDTGGGGVQTPMRAMPLPPTLDLDLFHRAAAVTAVA 144

Query:   144 XFNATVRFPFQPVGGAFGAANQVFYFDPVAAMKSQQ 179
                  VRFPF+    A  A +  F+++  AA+ + +
Sbjct:   145 --GTGVRFPFRGYPVARPATHPYFFYEQAAAVAAAE 178

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2032500 ERF11 "ERF domain protein 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 3.2e-21, Sum P(2) = 3.2e-21
 Identities = 48/82 (58%), Positives = 50/82 (60%)

Query:     1 MAPREKASGPAKVNGNSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXX 60
             MAP  K +   K N   NG    V +RGVRKRPWGRYAAEIRDP KKSRVWLGTFDT   
Sbjct:     1 MAPTVKTAA-VKTN-EGNG----VRYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEE 54

Query:    61 XXXXXXXXXXXXXGAKAKTNFP 82
                          GAKAKTNFP
Sbjct:    55 AARAYDKRAIEFRGAKAKTNFP 76

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2032510 ERF12 "ERF domain protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
 Identities = 42/68 (61%), Positives = 45/68 (66%)

Query:    17 SNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAK 76
             S    +EVH+RGVRKRPWGRYAAEIRDP KK+RVWLGTFDT                G K
Sbjct:     3 STTCAREVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIK 62

Query:    77 AKTNFPLP 84
             AKTNFP P
Sbjct:    63 AKTNFPSP 70

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2009655 ERF8 "ethylene response factor 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
 Identities = 39/72 (54%), Positives = 44/72 (61%)

Query:    10 PAKVNGNSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXX 69
             P     + +   KE+ +RGVRKRPWGRYAAEIRDP KK+RVWLGTFDT            
Sbjct:    15 PTNPTHHESNAAKEIRYRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAA 74

Query:    70 XXXXGAKAKTNF 81
                 G KAKTNF
Sbjct:    75 RDFRGVKAKTNF 86

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2008021 ERF3 "ethylene responsive element binding factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 45/80 (56%), Positives = 52/80 (65%)

Query:     8 SGPAKVNGNSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXX 67
             +GP  V    NG VKE+ FRGVRKRPWGR+AAEIRDP KK+RVWLGTFD+          
Sbjct:    11 AGPTVVAA-INGSVKEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDS 69

Query:    68 XXXXXXGAKAKTNFPLPSEN 87
                   G KAKTNFP+ S +
Sbjct:    70 AARNLRGPKAKTNFPIDSSS 89

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0010105 "negative regulation of ethylene mediated signaling pathway" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2092339 ERF7 "ethylene response factor 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 43/75 (57%), Positives = 49/75 (65%)

Query:     9 GPAKVNGNSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXX 68
             GPA +   + G VKE  +RGVRKRPWGR+AAEIRDP KKSRVWLGTFD+           
Sbjct:    11 GPA-LPVTAGGSVKEPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTA 69

Query:    69 XXXXXGAKAKTNFPL 83
                  G KAKTNFP+
Sbjct:    70 ARNLRGPKAKTNFPI 84

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2183861 Rap2.6L "related to AP2 6l" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
 Identities = 36/72 (50%), Positives = 43/72 (59%)

Query:    25 HFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP-- 82
             H+RGVR+RPWG++AAEIRDP K +RVWLGTF+T                G KAK NFP  
Sbjct:    38 HYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPER 97

Query:    83 LPSENVTNKISH 94
             +     T  ISH
Sbjct:    98 VQGPTTTTTISH 109

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0071497 "cellular response to freezing" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:2024249 ERF10 "ERF domain protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 37/62 (59%), Positives = 42/62 (67%)

Query:    22 KEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNF 81
             KEV +RGVR+RPWGRYAAEIRDP KK RVWLG+F+T                G+KA TNF
Sbjct:    49 KEVRYRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNF 108

Query:    82 PL 83
             PL
Sbjct:   109 PL 110

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00003062001 SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (227 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	241
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	1e-35
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	3e-31
pfam00847	53	pfam00847, AP2, AP2 domain	2e-15

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  120 bits (304), Expect = 1e-35
 Identities = 42/64 (65%), Positives = 49/64 (76%)

Query: 25 HFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPLP 84
           +RGVR+RPWG++ AEIRDP K  RVWLGTFDTAEEAARAYD AA +FRG  A+ NFP  
Sbjct: 1  KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Query: 85 SENV 88
            + 
Sbjct: 61 LYDS 64

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  109 bits (274), Expect = 3e-31
 Identities = 39/58 (67%), Positives = 46/58 (79%)

Query: 25 HFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFP 82
           +RGVR+RPWG++ AEIRDP    R+WLGTFDTAEEAARAYD AA + RG+ A  NFP
Sbjct: 2  KYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFP 59

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 68.1 bits (167), Expect = 2e-15
 Identities = 31/53 (58%), Positives = 35/53 (66%), Gaps = 4/53 (7%)

Query: 25 HFRGVRKRP-WGRYAAEIRDPG--KKSRVWLGTFDTAEEAARAYDAAAREFRG 74
           ++GVR    WGR+ AEIRDPG  KK R  LGTF T EEAARA  AA  + RG
Sbjct: 2  GYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	241
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.84
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.84
PHA00280	121	putative NHN endonuclease	99.53
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.15
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	81.44

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.84  E-value=5.2e-21  Score=138.60  Aligned_cols=63  Identities=67%  Similarity=1.146  Sum_probs=60.5

Q ss_pred             eeeEEEECCCCcEEEEEecCCCCeEEeeCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCc
Q 026240           25 HFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPLPSEN   87 (241)
Q Consensus        25 ~YRGV~~~~~GRW~A~I~~~~kkkri~LGtFdT~EEAArAYD~AA~k~~G~~A~lNFP~~~~~   87 (241)
                      +|+||+++++|||+|+|+++.+++++|||+|+|+||||+|||.++++++|.++.+|||.++|+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            599999999999999999988899999999999999999999999999999999999999886

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.84  E-value=5e-21  Score=136.97  Aligned_cols=61  Identities=64%  Similarity=1.123  Sum_probs=57.4

Q ss_pred             ceeeEEEECCCCcEEEEEecCCCCeEEeeCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 026240           24 VHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPLP   84 (241)
Q Consensus        24 S~YRGV~~~~~GRW~A~I~~~~kkkri~LGtFdT~EEAArAYD~AA~k~~G~~A~lNFP~~   84 (241)
                      |+|+||+++++|||+|+|+.+..++++|||+|+|+|||++|||.++++++|.++.+|||.+
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            5799999999999999999966689999999999999999999999999999999999863

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>PHA00280 putative NHN endonuclease

Probab=99.53  E-value=1.4e-14  Score=118.45  Aligned_cols=66  Identities=14%  Similarity=0.129  Sum_probs=59.0

Q ss_pred             ccccCCCCCCCCCCceeeEEEECC-CCcEEEEEecCCCCeEEeeCCCCCHHHHHHHHHHHHHHhcCCCCC
Q 026240           10 PAKVNGNSNGIVKEVHFRGVRKRP-WGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGAKAK   78 (241)
Q Consensus        10 ~~~s~~~~~~~~~tS~YRGV~~~~-~GRW~A~I~~~~kkkri~LGtFdT~EEAArAYD~AA~k~~G~~A~   78 (241)
                      ..++.|....++++|+|+||+|++ .|||+|+|+.  .+|+++||.|+++|+|+.||+ +++++||++|.
T Consensus        53 ~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         53 KENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             HHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            456677777888999999999876 6999999999  899999999999999999997 78899999875

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.15  E-value=6.3e-11  Score=82.65  Aligned_cols=52  Identities=35%  Similarity=0.486  Sum_probs=45.4

Q ss_pred             ceeeEEEECC-CCcEEEEEecCCC---CeEEeeCCCCCHHHHHHHHHHHHHHhcCC
Q 026240           24 VHFRGVRKRP-WGRYAAEIRDPGK---KSRVWLGTFDTAEEAARAYDAAAREFRGA   75 (241)
Q Consensus        24 S~YRGV~~~~-~GRW~A~I~~~~k---kkri~LGtFdT~EEAArAYD~AA~k~~G~   75 (241)
                      |+|+||++++ .++|+|+|++...   +++++||.|+++|||+++|+.+.++++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            5799998877 7999999998321   48999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=81.44  E-value=5.4  Score=26.91  Aligned_cols=38  Identities=24%  Similarity=0.315  Sum_probs=29.5

Q ss_pred             cEEEEEe--cC--CCCeEEeeCCCCCHHHHHHHHHHHHHHhc
Q 026240           36 RYAAEIR--DP--GKKSRVWLGTFDTAEEAARAYDAAAREFR   73 (241)
Q Consensus        36 RW~A~I~--~~--~kkkri~LGtFdT~EEAArAYD~AA~k~~   73 (241)
                      +|..+|.  ++  ++.++++-+-|.|..||..+......++.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            5888883  32  34578899999999999999988776653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	241
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		2e-11
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		2e-11

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 21 VKEVHFRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKT 79
           K  H+RGVR+RPWG++AAEIRDP K  +RVWLGTF+T                G++A  
Sbjct: 1  AKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALL 60
Query: 80 NFPL 83
          NFPL
Sbjct: 61 NFPL 64

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 25 HFRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPL 83
          H+RGVR+RPWG++AAEIRDP K  +RVWLGTF+T                G++A  NFPL
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	241
1gcc_A	63	Ethylene responsive element binding factor 1; tran	1e-37

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  125 bits (316), Expect = 1e-37
 Identities = 41/60 (68%), Positives = 50/60 (83%), Gaps = 1/60 (1%)

Query: 25 HFRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPL 83
          H+RGVR+RPWG++AAEIRDP K  +RVWLGTF+TAE+AA AYD AA   RG++A  NFPL
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	241
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.9
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	87.85
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	80.39

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.90  E-value=1.6e-24  Score=157.24  Aligned_cols=60  Identities=68%  Similarity=1.212  Sum_probs=56.9

Q ss_pred             eeeEEEECCCCcEEEEEecCCC-CeEEeeCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 026240           25 HFRGVRKRPWGRYAAEIRDPGK-KSRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPLP   84 (241)
Q Consensus        25 ~YRGV~~~~~GRW~A~I~~~~k-kkri~LGtFdT~EEAArAYD~AA~k~~G~~A~lNFP~~   84 (241)
                      +||||++++||||+|+|+++.+ ++++|||+|+|+||||+|||.|+++++|.++++|||.+
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            5999999999999999999875 68999999999999999999999999999999999964

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=87.85  E-value=0.2  Score=37.54  Aligned_cols=23  Identities=17%  Similarity=0.099  Sum_probs=19.9

Q ss_pred             CCceeeEEEECC-CCcEEEEEecC
Q 026240           22 KEVHFRGVRKRP-WGRYAAEIRDP   44 (241)
Q Consensus        22 ~tS~YRGV~~~~-~GRW~A~I~~~   44 (241)
                      ..|+|+||+|.+ .+.|.|+-.+.
T Consensus         4 ~~Sg~pGVsw~kR~~~WlA~W~e~   27 (77)
T 3igm_B            4 MSSGYPGVSWNKRMCAWLAFFYDG   27 (77)
T ss_dssp             CCSSSTTEEEETTTTEEEEEEEET
T ss_pred             CCCCCCcEEeecCCceEEEEEecC
Confidence            568899998887 69999999984

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=80.39  E-value=0.26  Score=40.43  Aligned_cols=37  Identities=5%  Similarity=-0.083  Sum_probs=27.8

Q ss_pred             eEEEECCCCcEEEEEecCCCCeEEeeCCCCCHHHHHHHHH
Q 026240           27 RGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYD   66 (241)
Q Consensus        27 RGV~~~~~GRW~A~I~~~~kkkri~LGtFdT~EEAArAYD   66 (241)
                      +||.+.+.++|.+.|...   +.++||.|+|.+|||++|.
T Consensus       110 ~g~~~~~~~k~~~vi~~~---~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          110 KAQQIAKIKNQKPIIVIS---PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             HHHHHHHHHTCCCEEEEC---TTSCEEEESCHHHHHHHHT
T ss_pred             eeeeeccCCCCceEEEEc---CCceEEeeCCHHHHHHHHC
Confidence            455442235688999884   4578999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	241
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	2e-32

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  110 bits (277), Expect = 2e-32
 Identities = 41/60 (68%), Positives = 50/60 (83%), Gaps = 1/60 (1%)

Query: 25 HFRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPL 83
          H+RGVR+RPWG++AAEIRDP K  +RVWLGTF+TAE+AA AYD AA   RG++A  NFPL
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	241
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.9

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=4.2e-25  Score=159.14  Aligned_cols=60  Identities=67%  Similarity=1.198  Sum_probs=56.0

Q ss_pred             eeeEEEECCCCcEEEEEecCC-CCeEEeeCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 026240           25 HFRGVRKRPWGRYAAEIRDPG-KKSRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPLP   84 (241)
Q Consensus        25 ~YRGV~~~~~GRW~A~I~~~~-kkkri~LGtFdT~EEAArAYD~AA~k~~G~~A~lNFP~~   84 (241)
                      +||||+++++|||+|+|+++. +++++|||+|+|+||||+|||+|+++++|.++.+|||+.
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            499999999999999999875 558999999999999999999999999999999999974