Citrus Sinensis ID: 026259

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
Protein Sequence
MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAESQDTGSSTTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEWVMPHIG
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEHEHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHcHHHccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mrtmgvkgLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVaesqdtgssttsstrmvaqdpndgyqVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSndcqgmvplenikmpSISELAAALEsknastiparigdcsvescltstsspvspmglgsqaaamkkrprplfgngeslplegnmrQEVEWVMPHIG
Flexible Loop (DISEMBL)
mrtmgvkgltlyHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVaesqdtgssttsstrmvaqdpnDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFgngeslplegnmrqevewvmphig
Low Complexity Region (SEG)
MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAESQDtgssttsstRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVaagleaareelselaIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEWVMPHIG
Disordered region (IsUnstruct)
*****VKGLTLYHLKSHLQKYRLGKQAC**********YVALEVSCV*****************************ALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIK***********************************************************************************
Disordered Region (DISOPRED)
******KGLTLYHLKSHLQK**********************************************************************************EAQGKYLQSI*********************************************************************************************************************RQEVEWVMPHI*
Disordered Region (DISEMBL)
MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCV*****************AQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGDCSVESC*********************KRPRPLFGNGESLPLEGNMRQEVEWVMPHIG
Disordered Region (DISPRO)
***MGVKGLTLYHLKSHLQKYRLGKQA*******************************************GYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALN************************************************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAESQDTGSSTTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEWVMPHIG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	241	2.2.26 [Sep-21-2011]
Q9SAK5	358	Myb family transcription	no	no	0.435	0.293	0.566	1e-28
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	no	no	0.452	0.263	0.419	9e-18

>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2

 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/120 (56%), Positives = 84/120 (70%), Gaps = 15/120 (12%)

Query: 1   MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAESQDTGSSTTSS 60
           MR MGVKGLTLYHLKSHLQK+RLGKQ  KE  ++S  +         A + D   +  SS
Sbjct: 66  MRVMGVKGLTLYHLKSHLQKFRLGKQPHKEYGDHSTKE------GSRASAMDIQRNVASS 119

Query: 61  TRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 120
           + M++++ N+         +QMEVQRRLHEQLEVQR LQLRIEAQGKY+QSILE+AC+ L
Sbjct: 120 SGMMSRNMNE---------MQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTL 170

Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score = 90.5 bits (223), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 52/124 (41%), Positives = 75/124 (60%), Gaps = 15/124 (12%)

Query: 1   MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAESQDTGSSTTSS 60
           ++ +   GLT+YH+KSHLQKYR  +    ET+E               E Q+     TS 
Sbjct: 263 LKLLNNPGLTIYHVKSHLQKYRTARYK-PETSE------------VTGEPQEK--KMTSI 307

Query: 61  TRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 120
             + + D     ++T+ALR+QMEVQ+RLHEQLE+QR LQL+IE QG+YLQ + EK  K  
Sbjct: 308 EDIKSLDMKTSVEITQALRLQMEVQKRLHEQLEIQRSLQLQIEKQGRYLQMMFEKQQKIQ 367

Query: 121 NDQA 124
           ++++
Sbjct: 368 DNKS 371

Transcription factor acting as central integrator of phosphate starvation responses.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
255554128	303	transcription factor, putative [Ricinus	0.970	0.772	0.821	1e-109
118486035	309	unknown [Populus trichocarpa]	0.983	0.766	0.804	1e-109
327412613	307	putative MYB transcription factor [Rosa	0.966	0.758	0.808	1e-101
224060385	285	predicted protein [Populus trichocarpa]	0.896	0.757	0.811	1e-100
302398985	307	MYBR domain class transcription factor [	0.987	0.775	0.763	4e-99
359477885	307	PREDICTED: uncharacterized protein LOC10	0.975	0.765	0.780	1e-96
224140815	280	predicted protein [Populus trichocarpa]	0.875	0.753	0.817	1e-95
449487536	315	PREDICTED: uncharacterized protein LOC10	0.970	0.742	0.726	2e-87
449432414	315	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.970	0.742	0.721	6e-87
147767430	250	hypothetical protein VITISV_027098 [Viti	0.937	0.904	0.629	9e-78

>gi|255554128|ref|XP_002518104.1| transcription factor, putative [Ricinus communis] gi|223542700|gb|EEF44237.1| transcription factor, putative [Ricinus communis]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/241 (82%), Positives = 222/241 (92%), Gaps = 7/241 (2%)

Query: 1   MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAESQDTGSSTTSS 60
           MRTMGVKGLTLYHLKSHLQKYRLG+Q+CKE+ ENSKD       + VAESQDTGSST++S
Sbjct: 70  MRTMGVKGLTLYHLKSHLQKYRLGRQSCKESNENSKD-------ASVAESQDTGSSTSTS 122

Query: 61  TRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 120
           +RM+AQD NDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL
Sbjct: 123 SRMIAQDVNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 182

Query: 121 NDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPAR 180
           NDQA V+AGLEAAREELSELAIKVSN+CQG+VP +N+KMPS+SELA ALESK+ S +PAR
Sbjct: 183 NDQAAVSAGLEAAREELSELAIKVSNECQGIVPADNMKMPSLSELAVALESKSTSNLPAR 242

Query: 181 IGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEWVMPHI 240
           IGDCSVESCLTST SPVSPMG+GS  A++KKRPRP+FGNG+SLPLEG+MRQEVEW+M +I
Sbjct: 243 IGDCSVESCLTSTGSPVSPMGVGSHTASIKKRPRPIFGNGDSLPLEGSMRQEVEWMMGNI 302

Query: 241 G 241
           G
Sbjct: 303 G 303

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486035|gb|ABK94861.1| unknown [Populus trichocarpa]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/240 (80%), Positives = 215/240 (89%), Gaps = 3/240 (1%)

Query: 1   MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAESQDTGSSTTSS 60
           MRTMGVKGLTLYHLKSHLQKYRLGKQ+CKE+T+NSKD  +A     VAESQDTGSST++S
Sbjct: 70  MRTMGVKGLTLYHLKSHLQKYRLGKQSCKESTDNSKDVGIA---PSVAESQDTGSSTSAS 126

Query: 61  TRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 120
           +RM+AQD NDGYQVTEALRVQMEVQRRLHEQLEVQ  LQLRIEAQGKYLQSILEKACKAL
Sbjct: 127 SRMIAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQHHLQLRIEAQGKYLQSILEKACKAL 186

Query: 121 NDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPAR 180
           NDQA+  AGLEAAREELSELAIKVSN+C G+ PL+ +KMPS+SELAAAL ++NAS +PAR
Sbjct: 187 NDQAVATAGLEAAREELSELAIKVSNECAGIAPLDTMKMPSLSELAAALGNRNASNVPAR 246

Query: 181 IGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEWVMPHI 240
           IGDCSVESCLTSTSSPVSPMG+GSQ A+ KKR RP+ GNG+SLP EGN RQEVEW M +I
Sbjct: 247 IGDCSVESCLTSTSSPVSPMGVGSQVASTKKRSRPVLGNGDSLPFEGNFRQEVEWTMSNI 306

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|327412613|emb|CCA29095.1| putative MYB transcription factor [Rosa rugosa] gi|327412625|emb|CCA29101.1| putative MYB transcription factor [Rosa rugosa]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/240 (80%), Positives = 214/240 (89%), Gaps = 7/240 (2%)

Query: 1   MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAESQDTGSSTTSS 60
           MRTMGVKGLTLYHLKSHLQKYRLGKQ+ KE+TENSKD       SC+AESQDTGSS TSS
Sbjct: 74  MRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKD------ASCIAESQDTGSSATSS 127

Query: 61  TRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 120
            R++AQD NDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL
Sbjct: 128 -RVIAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 186

Query: 121 NDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPAR 180
           NDQA  AAGLEAA+EELSELAIKVS+DCQGM PL+ IKM S+SE+AAA+E+K+AS + AR
Sbjct: 187 NDQAATAAGLEAAKEELSELAIKVSSDCQGMAPLDTIKMQSLSEIAAAIENKSASNVLAR 246

Query: 181 IGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEWVMPHI 240
           IG+CSV+SCLTST SP SPMG+ S AAAMKKR RP F NG+SLPLEGNMRQEVEW+M +I
Sbjct: 247 IGNCSVDSCLTSTGSPGSPMGMSSLAAAMKKRQRPFFSNGDSLPLEGNMRQEVEWMMSNI 306

Source: Rosa rugosa

Species: Rosa rugosa

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060385|ref|XP_002300173.1| predicted protein [Populus trichocarpa] gi|222847431|gb|EEE84978.1| predicted protein [Populus trichocarpa]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 181/223 (81%), Positives = 203/223 (91%), Gaps = 7/223 (3%)

Query: 1   MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAESQDTGSSTTSS 60
           MRTMGVKGLTLYHLKSHLQKYRLGKQ+CKE+T+NSKD       + VAESQDTGSST++S
Sbjct: 70  MRTMGVKGLTLYHLKSHLQKYRLGKQSCKESTDNSKD-------ASVAESQDTGSSTSAS 122

Query: 61  TRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 120
           +RM+AQD NDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL
Sbjct: 123 SRMIAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 182

Query: 121 NDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPAR 180
           NDQA+  AGLEAAREELSELAIKVSN+  G+ PL+ +KMPSISELAAALE+K+AS +PAR
Sbjct: 183 NDQAVATAGLEAAREELSELAIKVSNERAGIAPLDTMKMPSISELAAALENKHASNVPAR 242

Query: 181 IGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESL 223
           +GDCSVESCLTST SPVSPMG+G+Q A+ KKR RP+FGNG+SL
Sbjct: 243 VGDCSVESCLTSTGSPVSPMGVGAQVASTKKRSRPVFGNGDSL 285

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398985|gb|ADL36787.1| MYBR domain class transcription factor [Malus x domestica]

 Score =  366 bits (940), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 184/241 (76%), Positives = 213/241 (88%), Gaps = 3/241 (1%)

Query: 1   MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAESQDTGSSTTSS 60
           MRTMGVKGLTLYHLKSHLQKYRLGK +CK++ ENSKD   A   SC+AESQDTGSS+  S
Sbjct: 70  MRTMGVKGLTLYHLKSHLQKYRLGKLSCKDSAENSKDGIAA---SCIAESQDTGSSSAVS 126

Query: 61  TRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 120
           +R++AQD NDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQ KYLQSILEKACKAL
Sbjct: 127 SRVIAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQSKYLQSILEKACKAL 186

Query: 121 NDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPAR 180
           NDQA  AAG+EAA+EELSELAI+VSNDC+G+VPL++ K+PS+SE+AAALE+++ S + A 
Sbjct: 187 NDQAATAAGVEAAKEELSELAIRVSNDCEGIVPLDSTKIPSLSEIAAALENRDVSNVMAH 246

Query: 181 IGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEWVMPHI 240
           +G+CSV+SCLTST SPV PM + S AAAMKKR RP FGNG+SLPLE NMRQEVEW+M +I
Sbjct: 247 LGNCSVDSCLTSTGSPVLPMDMSSLAAAMKKRQRPFFGNGDSLPLESNMRQEVEWMMSNI 306

Query: 241 G 241
           G
Sbjct: 307 G 307

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477885|ref|XP_002268698.2| PREDICTED: uncharacterized protein LOC100250267 [Vitis vinifera]

 Score =  358 bits (918), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 188/241 (78%), Positives = 207/241 (85%), Gaps = 6/241 (2%)

Query: 1   MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAESQDTGSSTTSS 60
           MRTMGVKGLTLYHLKSHLQKYRLGKQ+CKE T+N K      E SC+AESQDTGSS+TSS
Sbjct: 73  MRTMGVKGLTLYHLKSHLQKYRLGKQSCKELTDNCK------EASCIAESQDTGSSSTSS 126

Query: 61  TRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 120
           +RM+ QD NDGYQVTEALRVQMEVQRRLHEQLEVQR LQLRIEAQGKYLQSILEKACKAL
Sbjct: 127 SRMIPQDLNDGYQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKACKAL 186

Query: 121 NDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPAR 180
            DQA   AGLEAAREELSEL IKVSNDC+GM PLE IKMP +SE+AAALE+KNA  +PAR
Sbjct: 187 KDQAAATAGLEAAREELSELQIKVSNDCEGMNPLETIKMPCLSEIAAALENKNAVNVPAR 246

Query: 181 IGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEWVMPHI 240
           IGDCSV+SCLTS+ SP+SPMG  S+ A MKKR RPLF  G SL LE NMRQ+VEW+M ++
Sbjct: 247 IGDCSVDSCLTSSGSPISPMGASSRGAVMKKRSRPLFTGGSSLALENNMRQDVEWMMTNM 306

Query: 241 G 241
           G
Sbjct: 307 G 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140815|ref|XP_002323774.1| predicted protein [Populus trichocarpa] gi|222866776|gb|EEF03907.1| predicted protein [Populus trichocarpa]

 Score =  355 bits (911), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 175/214 (81%), Positives = 194/214 (90%), Gaps = 3/214 (1%)

Query: 1   MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAESQDTGSSTTSS 60
           MRTMGVKGLTLYHLKSHLQKYRLGKQ+CKE+T+NSKD  +A     VAESQDTGSST++S
Sbjct: 70  MRTMGVKGLTLYHLKSHLQKYRLGKQSCKESTDNSKDVGIA---PSVAESQDTGSSTSAS 126

Query: 61  TRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 120
           +RM+AQD NDGYQVTEALRVQMEVQRRLHEQLEVQ  LQLRIEAQGKYLQSILEKACKAL
Sbjct: 127 SRMIAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQHHLQLRIEAQGKYLQSILEKACKAL 186

Query: 121 NDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPAR 180
           NDQA+  AGLEAAREELSELAIKVSN+C G+ PL+ +KMPS+SELAAAL ++NAS +PAR
Sbjct: 187 NDQAVATAGLEAAREELSELAIKVSNECAGIAPLDTMKMPSLSELAAALGNRNASNVPAR 246

Query: 181 IGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPR 214
           IGDCSVESCLTSTSSPVSPMG+GSQ A+ KKR R
Sbjct: 247 IGDCSVESCLTSTSSPVSPMGVGSQVASTKKRSR 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487536|ref|XP_004157675.1| PREDICTED: uncharacterized protein LOC101223852 [Cucumis sativus]

 Score =  328 bits (840), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 175/241 (72%), Positives = 204/241 (84%), Gaps = 7/241 (2%)

Query: 1   MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAESQDTGSSTTSS 60
           MRTMGVKGLTLYHLKSHLQKYRLGKQ+ KE+TENSKD       SC+AESQ+T SS++ S
Sbjct: 82  MRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKD------ASCIAESQETSSSSSPS 135

Query: 61  TRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 120
           +R++AQD NDG+QVTEALRVQMEVQRRLHEQLEVQR LQLRIEAQGKYLQSILE+AC+AL
Sbjct: 136 SRIMAQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILERACQAL 195

Query: 121 NDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPAR 180
           +DQA  +AGLEAAREELSELAIKVSND + M PLE  K    SELAAALE++ A T+  R
Sbjct: 196 SDQAAASAGLEAAREELSELAIKVSNDSKEMAPLETQKALPFSELAAALENRKAPTVMPR 255

Query: 181 IGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEWVMPHI 240
           IGDCS++SCLTS  SPVSP+G+GS A AM KRPRP+F +G+S+ LEGN R +VEW+M +I
Sbjct: 256 IGDCSMDSCLTSAGSPVSPIGVGSTATAM-KRPRPVFSHGDSMALEGNARHDVEWMMSNI 314

Query: 241 G 241
           G
Sbjct: 315 G 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432414|ref|XP_004133994.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101213244 [Cucumis sativus]

 Score =  326 bits (835), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 174/241 (72%), Positives = 204/241 (84%), Gaps = 7/241 (2%)

Query: 1   MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAESQDTGSSTTSS 60
           MRTMGVKGLTLYHLKSHLQKYRLGKQ+ KE+TENSKD       SC+AESQ+T SS++ S
Sbjct: 82  MRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKD------ASCIAESQETSSSSSPS 135

Query: 61  TRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 120
           +R++AQD NDG+QVTEALRVQMEVQRRLHEQLEVQR LQLRIEAQGKYLQSILE+AC+AL
Sbjct: 136 SRIMAQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILERACQAL 195

Query: 121 NDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPAR 180
           +DQA  +AGLEAAREELSELAIKVSND + M PLE  K+   SELAAALE++ A T+  R
Sbjct: 196 SDQAAASAGLEAAREELSELAIKVSNDSKEMAPLETQKVLPFSELAAALENRKAPTVMPR 255

Query: 181 IGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEWVMPHI 240
           IGDCS++SCLTS  SPVSP+G+GS A AM KRPRP+F +G+S+ LEGN R +V W+M +I
Sbjct: 256 IGDCSMDSCLTSAGSPVSPIGVGSTATAM-KRPRPVFSHGDSMALEGNARHDVXWMMSNI 314

Query: 241 G 241
           G
Sbjct: 315 G 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767430|emb|CAN66720.1| hypothetical protein VITISV_027098 [Vitis vinifera]

 Score =  295 bits (756), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 165/262 (62%), Positives = 185/262 (70%), Gaps = 36/262 (13%)

Query: 4   MGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAESQDTGSSTTSSTRM 63
           MGVKGLTLYHLKSHLQKYRLGKQ+CKE T+N K+    + +      Q+   S   S  +
Sbjct: 1   MGVKGLTLYHLKSHLQKYRLGKQSCKELTDNCKE---GINMDLHRTLQEFVHSAIDSVVL 57

Query: 64  VAQDPNDGYQVTEALRVQMEVQRRLHEQLEV------------------------QRRLQ 99
                     VTEALRVQMEVQRRLHEQLEV                        QR LQ
Sbjct: 58  ---------HVTEALRVQMEVQRRLHEQLEVSFFDWPNAAQAAEKDINVALFKQVQRHLQ 108

Query: 100 LRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKM 159
           LRIEAQGKYLQSILEKACKAL DQA   AGLEAAREELSEL IKVSNDC+GM PLE IKM
Sbjct: 109 LRIEAQGKYLQSILEKACKALKDQAAATAGLEAAREELSELQIKVSNDCEGMNPLETIKM 168

Query: 160 PSISELAAALESKNASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGN 219
           P +SE+AAALE+KNA  +PARIGDCSV+SCLTS+ SP+SPMG  S+AA MKKR RPLF  
Sbjct: 169 PCLSEIAAALENKNAVNVPARIGDCSVDSCLTSSGSPISPMGSSSRAAVMKKRSRPLFTG 228

Query: 220 GESLPLEGNMRQEVEWVMPHIG 241
           G SL LE NMRQ+VEW+M ++G
Sbjct: 229 GSSLALENNMRQDVEWMMTNMG 250

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
TAIR|locus:2119425	295	UNE16 "unfertilized embryo sac	0.879	0.718	0.564	1.6e-56
TAIR|locus:2093726	298	AT3G24120 [Arabidopsis thalian	0.821	0.664	0.581	2.1e-52
TAIR|locus:2095933	394	MYR2 [Arabidopsis thaliana (ta	0.751	0.459	0.409	1.3e-27
TAIR|locus:2206415	358	APL "ALTERED PHLOEM DEVELOPMEN	0.821	0.553	0.372	3.2e-26
TAIR|locus:2172394	402	MYR1 "myb-related protein 1" [	0.751	0.450	0.409	3.2e-26
TAIR|locus:2026739	337	AT1G69580 [Arabidopsis thalian	0.788	0.563	0.383	2.9e-23
TAIR|locus:2157146	264	AT5G45580 [Arabidopsis thalian	0.489	0.446	0.475	8e-21
TAIR|locus:2087740	235	AT3G12730 [Arabidopsis thalian	0.443	0.455	0.445	2.5e-19
TAIR|locus:2089260	449	AT3G13040 [Arabidopsis thalian	0.427	0.229	0.457	2.1e-17
TAIR|locus:2148720	413	PHL1 "AT5G29000" [Arabidopsis	0.452	0.263	0.403	1.6e-16

TAIR|locus:2119425 UNE16 "unfertilized embryo sac 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 140/248 (56%), Positives = 163/248 (65%)

Query:     1 MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAESQDXXXXXXXX 60
             MRTMGVKGLTLYHLKSHLQK+RLG+Q+CKE+ +NSKD      VSCVAESQD        
Sbjct:    69 MRTMGVKGLTLYHLKSHLQKFRLGRQSCKESIDNSKD------VSCVAESQDTGSSSTSS 122

Query:    61 XRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLE---VQRRLQLRIEAQGKYLQSILEKAC 117
              R+ AQ+ N+ YQVTEALR QMEVQRRLHEQLE   VQRRLQLRIEAQGKYLQSILEKAC
Sbjct:   123 LRLAAQEQNESYQVTEALRAQMEVQRRLHEQLEYTQVQRRLQLRIEAQGKYLQSILEKAC 182

Query:   118 KALNDQAIVXXXXXXXXXXXXXXXIKVS--NDCQGMVP-LENIKM--PSISELAAALESK 172
             KA+ +QA+                IK S  N CQG     +  KM  PS+SELA A+E K
Sbjct:   183 KAIEEQAVAFAGLEAAREELSELAIKASITNGCQGTTSTFDTTKMMIPSLSELAVAIEHK 242

Query:   173 NASTIPARIGDCSVESCLTSTS--SPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMR 230
             N         +CS ES LTS++  SPVS       AA MKKR R +FGNG+S+ + G+  
Sbjct:   243 N---------NCSAESSLTSSTVGSPVS-------AALMKKRQRGVFGNGDSVVV-GH-- 283

Query:   231 QEVEWVMP 238
              +  WVMP
Sbjct:   284 -DAGWVMP 290

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

TAIR|locus:2093726 AT3G24120 [Arabidopsis thaliana (taxid:3702)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 129/222 (58%), Positives = 146/222 (65%)

Query:     1 MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAESQDXXXXXXXX 60
             MRTMGVKGLTLYHLKSHLQK+RLG+QA KE+TENSKD       SCV ESQD        
Sbjct:    73 MRTMGVKGLTLYHLKSHLQKFRLGRQAGKESTENSKD------ASCVGESQDTGSSSTSS 126

Query:    61 XRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLE---VQRRLQLRIEAQGKYLQSILEKAC 117
              RM  Q+ N+GYQVTEALR QMEVQRRLH+QLE   VQRRLQLRIEAQGKYLQSILEKAC
Sbjct:   127 MRMAQQEQNEGYQVTEALRAQMEVQRRLHDQLEYGQVQRRLQLRIEAQGKYLQSILEKAC 186

Query:   118 KALNDQAIVXXXXXXXXXXXXXXXIKVSNDCQGM-VPL----ENIKMPSISELAAALESK 172
             KA ++QA                 IKVSN  QG  VP     + + MPS+SELA A+++K
Sbjct:   187 KAFDEQAATFAGLEAAREELSELAIKVSNSSQGTSVPYFDATKMMMMPSLSELAVAIDNK 246

Query:   173 NASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPR 214
             N  T      +CSVES LTS +      G    AA+MKKR R
Sbjct:   247 NNITT-----NCSVESSLTSITH-----GSSISAASMKKRQR 278

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2095933 MYR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 79/193 (40%), Positives = 103/193 (53%)

Query:     1 MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAESQDXXXXXXXX 60
             M+ MG+ GLTLYHLKSHLQKYRL K    +   N+  + + + ++ + E           
Sbjct:    77 MKVMGIPGLTLYHLKSHLQKYRLSKNLNGQA--NNSFNKIGI-MTMMEEKTPDADEIQSE 133

Query:    61 XRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 120
                +   PN    + EAL++Q+EVQRRLHEQLEVQR LQLRIEAQGKYLQS+LEKA + L
Sbjct:   134 NLSIGPQPNKNSPIGEALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAQETL 193

Query:   121 NDQAIVXXXXXXXXXXXXXXXIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPAR 180
               Q +                 KVS +     P  +   P   EL      +  +  P  
Sbjct:   194 GRQNLGAAGIEAAKVQLSELVSKVSAE----YPNSSFLEPK--ELQNLCSQQMQTNYPP- 246

Query:   181 IGDCSVESCLTST 193
               DCS+ESCLTS+
Sbjct:   247 --DCSLESCLTSS 257

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2206415 APL "ALTERED PHLOEM DEVELOPMENT" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 82/220 (37%), Positives = 113/220 (51%)

Query:     1 MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAESQDXXXXXXXX 60
             MR MGVKGLTLYHLKSHLQK+RLGKQ  KE  ++S  +         A + D        
Sbjct:    66 MRVMGVKGLTLYHLKSHLQKFRLGKQPHKEYGDHSTKE------GSRASAMDIQRNVASS 119

Query:    61 XRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 120
               M++++ N+         +QMEVQRRLHEQLEVQR LQLRIEAQGKY+QSILE+AC+ L
Sbjct:   120 SGMMSRNMNE---------MQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTL 170

Query:   121 NDQAIVXXXXXXXXXXXXXXXIKVSNDCQGMVPLEN-IKMPSISELAAALESKNASTIPA 179
               + +                +  S+    + P  + +  P   +L     + +      
Sbjct:   171 AGENMAAATAAAAVGGGYKGNLGSSSLSAAVGPPPHPLSFPPFQDLNIYGNTTDQVLDHH 230

Query:   180 RIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGN 219
                  ++E+  T  ++  + + LG      KKRP P FGN
Sbjct:   231 NFHHQNIENHFTGNNAADTNIYLG------KKRPNPNFGN 264

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010088 "phloem development" evidence=IMP

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2172394 MYR1 "myb-related protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 79/193 (40%), Positives = 104/193 (53%)

Query:     1 MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAESQDXXXXXXXX 60
             M+ MG+ GLTLYHLKSHLQKYRL K    +   NS  +  ++ ++ V E+          
Sbjct:    77 MKVMGIPGLTLYHLKSHLQKYRLSKNLNGQA--NSSLNKTSV-MTMVEENPPEVDESHSE 133

Query:    61 XRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 120
                +   P+    +++AL++Q+EVQRRLHEQLEVQR LQLRIEAQGKYLQSILEKA + L
Sbjct:   134 SLSIGPQPSMNLPISDALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQETL 193

Query:   121 NDQAIVXXXXXXXXXXXXXXXIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPAR 180
               Q +                 KVS D     P  +   P   EL      +   T P  
Sbjct:   194 GRQNLGAAGIEATKAQLSELVSKVSAD----YPDSSFLEPK--ELQNLHHQQMQKTYPP- 246

Query:   181 IGDCSVESCLTST 193
               + S++SCLTS+
Sbjct:   247 --NSSLDSCLTSS 257

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2026739 AT1G69580 [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 76/198 (38%), Positives = 100/198 (50%)

Query:     1 MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAESQDXXXXXXXX 60
             M+ M + GLTLYHLKSHLQKYRLGK    +  +N  +   A E   V    D        
Sbjct:    66 MKVMEIPGLTLYHLKSHLQKYRLGKSM--KFDDNKLEVSSASENQEVESKNDSRDLRGCS 123

Query:    61 XRMVAQDP-ND-GYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACK 118
                   +P  D G Q+TEAL++QMEVQ++LHEQ+EVQR LQ++IEAQGKYLQS+L KA +
Sbjct:   124 VTEENSNPAKDRGLQITEALQMQMEVQKKLHEQIEVQRHLQVKIEAQGKYLQSVLMKAQQ 183

Query:   119 ALNDQAIVXXXXXXXXXXXXXXXIKVSNDCQGMVPLENIKMPSISE-LAAALESKNASTI 177
              L   +                   V+  C      E  ++    E      + +N    
Sbjct:   184 TLAGYSSSNLGMDFARTELSRLASMVNRGCPSTSFSELTQVEEEEEGFLWYKKPENRGIS 243

Query:   178 PARIGDCSVESCLTSTSS 195
               R   CSVES LTS+ +
Sbjct:   244 QLR---CSVESSLTSSET 258

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

TAIR|locus:2157146 AT5G45580 [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 58/122 (47%), Positives = 79/122 (64%)

Query:     1 MRTMGVKGLTLYHLKSHLQKYRLGKQACKET--TENSKDDYVALEVSCVAESQDXXXXXX 58
             ++ MG+KGLTLYHLKSHLQKYRLG+Q  K+   TE +K++  +  V     SQ       
Sbjct:    39 LKLMGLKGLTLYHLKSHLQKYRLGQQQGKKQNRTEQNKENAGSSYVHFDNCSQGGISNDS 98

Query:    59 XXXRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACK 118
                    Q  N  +   EA+R Q++ Q+R  EQLEVQ++LQ+R+EAQGKYL ++LEKA K
Sbjct:    99 RFDNHQRQSGNVPF--AEAMRHQVDAQQRFQEQLEVQKKLQMRMEAQGKYLLTLLEKAQK 156

Query:   119 AL 120
             +L
Sbjct:   157 SL 158

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2087740 AT3G12730 [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 53/119 (44%), Positives = 73/119 (61%)

Query:     1 MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAESQDXXXXXXXX 60
             MR MGVKGLTLYHLKSHLQK+RLGKQ  KE ++N           C+ ++          
Sbjct:    55 MRVMGVKGLTLYHLKSHLQKFRLGKQPHKEHSQNHS--------ICIRDTNRASMLDLRR 106

Query:    61 XRMVAQDPND-GYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACK 118
               +    P   G  + E   +QMEVQRR+ E++ ++R++  RI AQGKY++S+LEKAC+
Sbjct:   107 NAVFTTSPLIIGRNMNE---MQMEVQRRIEEEVVIERQVNQRIAAQGKYMESMLEKACE 162

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2089260 AT3G13040 [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 2.1e-17, P = 2.1e-17
 Identities = 54/118 (45%), Positives = 76/118 (64%)

Query:     2 RTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAESQDXXXXXXXXX 61
             + M V+GLT+YH+KSHLQKYRL K   ++  E   D+    +++ +++S+          
Sbjct:   274 KLMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKRTDNSEEKKLA-LSKSE---------- 322

Query:    62 RMVAQDPNDG-YQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACK 118
                A +   G  Q+TEALR+QMEVQ++LHEQLEVQR LQLRIE   KYL+ +LE+  K
Sbjct:   323 ---ADEKKKGAIQLTEALRMQMEVQKQLHEQLEVQRVLQLRIEEHAKYLEKMLEEQRK 377

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2148720 PHL1 "AT5G29000" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 1.6e-16, P = 1.6e-16
 Identities = 50/124 (40%), Positives = 73/124 (58%)

Query:     1 MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAESQDXXXXXXXX 60
             ++ +   GLT+YH+KSHLQKYR  +    ET+E               E Q+        
Sbjct:   263 LKLLNNPGLTIYHVKSHLQKYRTARYK-PETSE------------VTGEPQEKKMTSIED 309

Query:    61 XRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 120
              + +  D     ++T+ALR+QMEVQ+RLHEQLE+QR LQL+IE QG+YLQ + EK  K  
Sbjct:   310 IKSL--DMKTSVEITQALRLQMEVQKRLHEQLEIQRSLQLQIEKQGRYLQMMFEKQQKIQ 367

Query:   121 NDQA 124
             ++++
Sbjct:   368 DNKS 371

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.I.3491.1 hypothetical protein (285 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	241
pfam14379	51	pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor,	1e-24
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	1e-04

>gnl|CDD|206547 pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor, LHEQLE motif

 Score = 91.9 bits (229), Expect = 1e-24
 Identities = 42/51 (82%), Positives = 46/51 (90%)

Query: 71  GYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALN 121
           G Q+TEALR+QMEVQRRLHEQLEVQR LQ+RIEAQGKYLQ ILEKA K L+
Sbjct: 1   GMQITEALRLQMEVQRRLHEQLEVQRHLQIRIEAQGKYLQEILEKAQKTLS 51

This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif. Length = 51

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 13/22 (59%), Positives = 15/22 (68%)

Query: 4  MGVKGLTLYHLKSHLQKYRLGK 25
          M V GLT   + SHLQKYRL +
Sbjct: 36 MVVDGLTRDQVASHLQKYRLKQ 57

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	241
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	99.94
PLN03162	526	golden-2 like transcription factor; Provisional	98.72
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	98.01
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	94.12
PF15235	137	GRIN_C: G protein-regulated inducer of neurite out	80.28

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=99.94  E-value=3.8e-27  Score=167.51  Aligned_cols=51  Identities=88%  Similarity=1.125  Sum_probs=49.1

Q ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 026259           71 GYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALN  121 (241)
Q Consensus        71 ~~qI~EALrmQmEVQrRLhEQLEvQR~LQlRIEaQGkYLq~iLEKAqe~La  121 (241)
                      |++|+||||+||||||||||||||||+||+|||||||||++|||||+++++
T Consensus         1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s   51 (51)
T PF14379_consen    1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS   51 (51)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            578999999999999999999999999999999999999999999999874

>PLN03162 golden-2 like transcription factor; Provisional

Probab=98.72  E-value=3.5e-09  Score=101.50  Aligned_cols=26  Identities=46%  Similarity=0.676  Sum_probs=24.4

Q ss_pred             CcccCCCCchHHHHHHHhhhhhhccc
Q 026259            1 MRTMGVKGLTLYHLKSHLQKYRLGKQ   26 (241)
Q Consensus         1 lRLMGVkGLTLYHLKSHLQKYRLgK~   26 (241)
                      |++|+|+|||++||||||||||+.++
T Consensus       266 LelMnV~GLTRenVKSHLQKYRl~rk  291 (526)
T PLN03162        266 LELMGVQCLTRHNIASHLQKYRSHRR  291 (526)
T ss_pred             HHHcCCCCcCHHHHHHHHHHHHHhcc
Confidence            57999999999999999999999875

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=98.01  E-value=2.1e-06  Score=62.07  Aligned_cols=23  Identities=57%  Similarity=0.699  Sum_probs=21.3

Q ss_pred             cccCCCCchHHHHHHHhhhhhhc
Q 026259            2 RTMGVKGLTLYHLKSHLQKYRLG   24 (241)
Q Consensus         2 RLMGVkGLTLYHLKSHLQKYRLg   24 (241)
                      .+|++++||..||+|||||||+-
T Consensus        34 ~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557        34 ELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             HHcCCCCCCHHHHHHHHHHHHcc
Confidence            57999999999999999999984

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=94.12  E-value=0.13  Score=37.17  Aligned_cols=35  Identities=43%  Similarity=0.499  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 026259           86 RRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALN  121 (241)
Q Consensus        86 rRLhEQLEvQR~LQlRIEaQGkYLq~iLEKAqe~La  121 (241)
                      --|..|+||||+|.=.+|.| |-|+.=+|..-+-|.
T Consensus         6 EALr~QmEvQrrLhEQLEvQ-r~Lqlrieaqgkyl~   40 (51)
T PF14379_consen    6 EALRMQMEVQRRLHEQLEVQ-RHLQLRIEAQGKYLQ   40 (51)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHH
Confidence            45789999999999999999 677766666655543

>PF15235 GRIN_C: G protein-regulated inducer of neurite outgrowth C-terminus

Probab=80.28  E-value=1.3  Score=37.87  Aligned_cols=19  Identities=21%  Similarity=0.371  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHhHHHHH
Q 026259           93 EVQRRLQLRIEAQGKYLQS  111 (241)
Q Consensus        93 EvQR~LQlRIEaQGkYLq~  111 (241)
                      -||+||+++||+|++....
T Consensus        71 AIQkHLE~qi~e~~~q~~~   89 (137)
T PF15235_consen   71 AIQKHLERQIEEHERQRAP   89 (137)
T ss_pred             HHHHHHHHHHHHhhhcccc
Confidence            4899999999999988754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	241
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	4e-07

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 45.3 bits (107), Expect = 4e-07
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 1  MRTMGVKGLTLYHLKSHLQKYRLGKQ 26
          +  M V  LT  ++ SHLQK+R+  +
Sbjct: 36 LDLMNVDKLTRENVASHLQKFRVALK 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	241
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.13

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.13  E-value=7.8e-12  Score=91.71  Aligned_cols=25  Identities=40%  Similarity=0.547  Sum_probs=22.9

Q ss_pred             CcccCCCCchHHHHHHHhhhhhhcc
Q 026259            1 MRTMGVKGLTLYHLKSHLQKYRLGK   25 (241)
Q Consensus         1 lRLMGVkGLTLYHLKSHLQKYRLgK   25 (241)
                      |++|||+|||++||||||||||+..
T Consensus        36 l~~M~v~gLT~~~VkSHLQKYR~~l   60 (64)
T 1irz_A           36 LDLMNVDKLTRENVASHLQKFRVAL   60 (64)
T ss_dssp             HHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCHHHHHHHHHHHHHHH
Confidence            4689999999999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	241
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	4e-06

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 41.1 bits (96), Expect = 4e-06
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 1  MRTMGVKGLTLYHLKSHLQKYRL 23
          +  M V  LT  ++ SHLQK+R+
Sbjct: 36 LDLMNVDKLTRENVASHLQKFRV 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	241
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	98.72

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.72  E-value=1e-09  Score=78.61  Aligned_cols=24  Identities=42%  Similarity=0.531  Sum_probs=22.2

Q ss_pred             cccCCCCchHHHHHHHhhhhhhcc
Q 026259            2 RTMGVKGLTLYHLKSHLQKYRLGK   25 (241)
Q Consensus         2 RLMGVkGLTLYHLKSHLQKYRLgK   25 (241)
                      .+|||+|||+.||+|||||||+..
T Consensus        37 ~~m~v~~lT~~qV~SHlQKYrl~l   60 (64)
T d1irza_          37 DLMNVDKLTRENVASHLQKFRVAL   60 (64)
T ss_dssp             HHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCCCHHHHHHHHHHHHHHH
Confidence            579999999999999999999864