Citrus Sinensis ID: 026282

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
Protein Sequence
MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEHIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccHHcccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMesgtehidlaTITDRMAVKKAVQCGNVEDAIEKVndlnpeildtnpqLFFHLQQQRLIELIRNGKVEEALEFAQEelaprgeenQSFLEELERTVALLAFedvsncpvgdlLDISQRLKTASEVNAAILtsqshekdpklPSLLKMLLWAQNQldekaayprindlatatledpai
Flexible Loop (DISEMBL)
MSLFWIVIRQLAEIEAMAmskkvitreewekklndvkirkedmnKLVMNFLVTEGYVDAAEKFRMESGTEHIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAIltsqshekdpkLPSLLKMLLWAQNQLDEKAAYPRINDlatatledpai
Low Complexity Region (SEG)
MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEHIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVeealefaqeelaPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI
Disordered region (IsUnstruct)
**LFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEHIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEF**************FLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAI**************LLKMLLWAQNQLDEKAAYPRI*************
Disordered Region (DISOPRED)
***FW***************************LNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEHIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQ***KDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDP**
Disordered Region (DISEMBL)
MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEHIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI
Disordered Region (DISPRO)
*SLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEHIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLFWIVIRQLAEIEAMAMSKKVITxxxxxxxxxxxxxxxxxxxxxVMNFLVTEGYVDAAEKFRMESGTEHIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	241	2.2.26 [Sep-21-2011]
Q54X16	228	Glucose-induced degradati	yes	no	0.900	0.951	0.637	3e-78
A7SWD3	225	Glucose-induced degradati	N/A	no	0.892	0.955	0.502	2e-59
Q6PC55	228	Glucose-induced degradati	yes	no	0.925	0.978	0.541	6e-58
Q5ZKQ7	228	Glucose-induced degradati	yes	no	0.896	0.947	0.536	6e-58
Q32L52	228	Glucose-induced degradati	yes	no	0.896	0.947	0.527	3e-57
Q9D7M1	228	Glucose-induced degradati	yes	no	0.896	0.947	0.527	1e-56
Q9NWU2	228	Glucose-induced degradati	yes	no	0.896	0.947	0.527	2e-56
Q10446	240	Uncharacterized protein C	yes	no	0.796	0.8	0.359	3e-21
Q96S59	729	Ran-binding protein 9 OS=	no	no	0.373	0.123	0.369	3e-08
Q9PTY5	548	Ran-binding protein 9 OS=	N/A	no	0.427	0.187	0.330	2e-07

>sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog OS=Dictyostelium discoideum GN=DDB_G0279265 PE=3 SV=2

 Score =  291 bits (745), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 139/218 (63%), Positives = 171/218 (78%), Gaps = 1/218 (0%)

Query: 21  KKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEH-IDLATITD 79
           KKVI+  EW+ KL +V I K D+NKLVMN+LV EGY +AA KF+ ES T+  +DLA+I D
Sbjct: 11  KKVISTSEWDDKLAEVNISKSDLNKLVMNYLVIEGYQEAAAKFQEESSTQTTVDLASIAD 70

Query: 80  RMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQ 139
           RMA++ A+QCG+VE  IE VNDLNPEILDTNPQL+FHLQQQ+LIELIR G   EAL+FAQ
Sbjct: 71  RMAIRSAIQCGDVEKGIEIVNDLNPEILDTNPQLYFHLQQQKLIELIRKGMTAEALKFAQ 130

Query: 140 EELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSH 199
           +ELAP+GEEN  FLEELE+T++LL FED +  P+  LLD SQR KTA E+N+AIL SQS 
Sbjct: 131 DELAPQGEENNKFLEELEKTISLLVFEDTAKSPLSSLLDHSQRQKTAGELNSAILLSQSQ 190

Query: 200 EKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLE 237
           +KDPKLP++LK+L WAQ QLD K  YP+I +  T   E
Sbjct: 191 DKDPKLPTILKLLKWAQTQLDSKCIYPKITNTVTGEYE 228

Dictyostelium discoideum (taxid: 44689)

>sp|A7SWD3|GID8_NEMVE Glucose-induced degradation protein 8 homolog OS=Nematostella vectensis GN=v1g247787 PE=3 SV=1

 Score =  229 bits (583), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/217 (50%), Positives = 166/217 (76%), Gaps = 2/217 (0%)

Query: 24  ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEHI-DLATITDRMA 82
           + REEW +K+  ++ ++ +MN+L+M++LVTEGY +AAEKFR+ESGT+    L ++ DR+ 
Sbjct: 7   VNREEWMEKIGKLRFQRAEMNRLIMDYLVTEGYKEAAEKFRIESGTQPTAPLDSLDDRIK 66

Query: 83  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 142
           +++AVQ G++E A+   N LNP+ILD+N QL+FHLQQQRLIELIR   +E A+EFAQ + 
Sbjct: 67  IREAVQKGDLEQAVSMTNKLNPDILDSNQQLYFHLQQQRLIELIREKDIEAAVEFAQGQF 126

Query: 143 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 202
           + +G+E+  +LEELE+T+ALLAF++    P GDLL  SQR K ASE+NAAIL ++  +  
Sbjct: 127 SEQGQESGRYLEELEQTMALLAFDNPEESPFGDLLHTSQRQKVASELNAAILEAEHKKTQ 186

Query: 203 PKLPSLLKMLLWAQNQLD-EKAAYPRINDLATATLED 238
           PKL ++LK+LLWAQ++L+ +K  +P++ ++A+ T E+
Sbjct: 187 PKLANVLKLLLWAQDELEGKKVKFPKMAEIASGTFEE 223

Nematostella vectensis (taxid: 45351)

>sp|Q6PC55|GID8_DANRE Glucose-induced degradation protein 8 homolog OS=Danio rerio GN=gid8 PE=2 SV=1

 Score =  224 bits (570), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 123/227 (54%), Positives = 170/227 (74%), Gaps = 4/227 (1%)

Query: 17  MAMSKKV--ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE-HID 73
           M+ S+K   IT+EEW  KLN+V I++ DMN+L+MN+LVTEG+ +AAEKFRMESG E ++D
Sbjct: 1   MSYSEKPEDITKEEWMDKLNNVHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPNVD 60

Query: 74  LATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEE 133
           L ++ +R+ +++ V  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E 
Sbjct: 61  LDSLDERIKIREMVLKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRLRETEA 120

Query: 134 ALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAI 193
           ALEFAQ +LA +GEE++  L E+ERT+ALLAF++    P GDLL++ QR K  SEVN A+
Sbjct: 121 ALEFAQSQLAEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAV 180

Query: 194 LTSQSHEKDPKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP 239
           L  ++ E  PKL  LLK+LLWAQN+LD+ K  Y R+ DL+  T+EDP
Sbjct: 181 LDYENRESTPKLAKLLKLLLWAQNELDQKKVKYSRMTDLSKGTIEDP 227

Danio rerio (taxid: 7955)

>sp|Q5ZKQ7|GID8_CHICK Glucose-induced degradation protein 8 homolog OS=Gallus gallus GN=GID8 PE=2 SV=1

 Score =  223 bits (569), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 117/218 (53%), Positives = 166/218 (76%), Gaps = 2/218 (0%)

Query: 24  ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE-HIDLATITDRMA 82
           IT++EW +KLN++ I++ DMN+L+MN+LVTEG+ +AAEKFRMESG E  +DL T+ +R+ 
Sbjct: 10  ITKDEWMEKLNNLHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query: 83  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 142
           +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ +L
Sbjct: 70  IREMILKGQIQEAISLINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query: 143 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 202
           A +GEE++  L E+ERT+ALLAF++    P GDLL++ QR K  SEVN A+L  ++ E  
Sbjct: 130 AEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENREST 189

Query: 203 PKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP 239
           PKL  LLK+LLWAQN+LD+ K  YP++ DL+  T+E+P
Sbjct: 190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGTIEEP 227

Gallus gallus (taxid: 9031)

>sp|Q32L52|GID8_BOVIN Glucose-induced degradation protein 8 homolog OS=Bos taurus GN=GID8 PE=2 SV=1

 Score =  221 bits (563), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 115/218 (52%), Positives = 166/218 (76%), Gaps = 2/218 (0%)

Query: 24  ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE-HIDLATITDRMA 82
           IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG E  +DL T+ +R+ 
Sbjct: 10  ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query: 83  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 142
           +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ +L
Sbjct: 70  IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query: 143 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 202
           A +GEE++  L E+ERT+ALLAF++  + P GDLL++ QR K  SEVN A+L  ++ E  
Sbjct: 130 AEQGEESRECLTEMERTLALLAFDNPEDSPFGDLLNMMQRQKVWSEVNQAVLDYENREST 189

Query: 203 PKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP 239
           PKL  LLK+LLWAQN+LD+ K  YP++ DL+   +E+P
Sbjct: 190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEP 227

Bos taurus (taxid: 9913)

>sp|Q9D7M1|GID8_MOUSE Glucose-induced degradation protein 8 homolog OS=Mus musculus GN=Gid8 PE=2 SV=1

 Score =  219 bits (559), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 115/218 (52%), Positives = 163/218 (74%), Gaps = 2/218 (0%)

Query: 24  ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE-HIDLATITDRMA 82
           IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG E  +DL T+ +R+ 
Sbjct: 10  ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query: 83  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 142
           +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ +L
Sbjct: 70  IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query: 143 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 202
           A +GEE++  L E+ERT+ALLAF+     P GDLL + QR K  SEVN A+L  ++ E  
Sbjct: 130 AEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHMMQRQKVWSEVNQAVLDYENREST 189

Query: 203 PKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP 239
           PKL  LLK+LLWAQN+LD+ K  YP++ DL+   +E+P
Sbjct: 190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEP 227

Mus musculus (taxid: 10090)

>sp|Q9NWU2|GID8_HUMAN Glucose-induced degradation protein 8 homolog OS=Homo sapiens GN=GID8 PE=1 SV=1

 Score =  219 bits (557), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 115/218 (52%), Positives = 162/218 (74%), Gaps = 2/218 (0%)

Query: 24  ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE-HIDLATITDRMA 82
           IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG E  +DL T+ +R+ 
Sbjct: 10  ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query: 83  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 142
           +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ +L
Sbjct: 70  IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query: 143 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 202
           A +GEE++  L E+ERT+ALLAF+     P GDLL   QR K  SEVN A+L  ++ E  
Sbjct: 130 AEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHTMQRQKVWSEVNQAVLDYENREST 189

Query: 203 PKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP 239
           PKL  LLK+LLWAQN+LD+ K  YP++ DL+   +E+P
Sbjct: 190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEP 227

Homo sapiens (taxid: 9606)

>sp|Q10446|YDED_SCHPO Uncharacterized protein C12B10.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC12B10.13 PE=4 SV=1

 Score =  102 bits (253), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/203 (35%), Positives = 115/203 (56%), Gaps = 11/203 (5%)

Query: 27  EEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG-TEHIDLATITDRMAVKK 85
           E+WEK+   V I   D+N L++++LV +G  +AA+ F  E+  T++     + +R+ + +
Sbjct: 20  EQWEKQTKSVHIDNSDVNSLILDYLVIQGDEEAAKTFAEEAQITDYYIPPYVKERLEICE 79

Query: 86  AVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIEL---------IRNGKVEEALE 136
            ++ G++  AI K+N+L PEILDTN +L F L + RL+EL           +  VE  L 
Sbjct: 80  LIKSGSINSAICKLNELEPEILDTNSELLFELLRLRLLELIREVVEEKDTSDLAVERCLN 139

Query: 137 FAQEELAPRGEENQSFLEELERTVALLAFEDVSNCP-VGDLLDISQRLKTASEVNAAILT 195
           FA E LAP    NQ FL  LE T++LL F   S  P + ++L+ SQR + A+  N +IL 
Sbjct: 140 FAHENLAPLAPSNQKFLNSLELTMSLLCFPPSSYSPALKNVLNYSQRERVANLANVSILK 199

Query: 196 SQSHEKDPKLPSLLKMLLWAQNQ 218
           SQ    + +L SL+    W + +
Sbjct: 200 SQGLSNESRLLSLVNFERWCEKE 222

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q96S59|RANB9_HUMAN Ran-binding protein 9 OS=Homo sapiens GN=RANBP9 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 2/92 (2%)

Query: 43  MNKLVMNFLVTEGYVDAAEKF-RMESGTEHIDLATITDRMAVKKAVQCGNVEDAIEKVND 101
           + K+V ++LV  GY   AE F R    T   +LA+I +R  ++K V  G + +AIE    
Sbjct: 369 IQKMVSSYLVHHGYCATAEAFARSTDQTVLEELASIKNRQRIQKLVLAGRMGEAIETTQQ 428

Query: 102 LNPEILDTNPQLFFHLQQQRLIELIRNGKVEE 133
           L P +L+ NP L F L+ ++ IE++ NG   E
Sbjct: 429 LYPSLLERNPNLLFTLKVRQFIEMV-NGTDSE 459

May act as an adapter protein to couple membrane receptors to intracellular signaling pathways. May be involved in signaling of ITGB2/LFA-1 and other integrins. Enhances HGF-MET signaling by recruiting Sos and activating the Ras pathway. Enhances dihydrotestosterone-induced transactivation activity of AR, as well as dexamethasone-induced transactivation activity of NR3C1, but not affect estrogen-induced transactivation. Stabilizes TP73 isoform Alpha, probably by inhibiting its ubiquitination, and increases its proapoptotic activity. Inhibits the kinase activity of DYRK1A and DYRK1B. Inhibits FMR1 binding to RNA.

Homo sapiens (taxid: 9606)

>sp|Q9PTY5|RANB9_XENLA Ran-binding protein 9 OS=Xenopus laevis GN=ranbp9 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 3/106 (2%)

Query: 43  MNKLVMNFLVTEGYVDAAEKF-RMESGTEHIDLATITDRMAVKKAVQCGNVEDAIEKVND 101
           + ++V ++LV  GY   AE F +    T   +LA+I +R  ++K V  G + +AIE    
Sbjct: 221 IQRMVSSYLVHHGYCSTAEAFAKSTDQTVQEELASIKNRQRIQKLVLSGRMGEAIETTQQ 280

Query: 102 LNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL-APRG 146
           L P +L+ NP L F L+ ++ IE++ NG   E        L +P G
Sbjct: 281 LYPSLLERNPNLLFTLKVRQFIEMV-NGTDSEVRCLGNRSLKSPDG 325

May act as an adapter protein to couple membrane receptors to intracellular signaling pathways.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
255560784	287	Protein C20orf11, putative [Ricinus comm	1.0	0.839	0.954	1e-128
224113997	242	predicted protein [Populus trichocarpa]	1.0	0.995	0.954	1e-128
449457706	242	PREDICTED: glucose-induced degradation p	1.0	0.995	0.946	1e-127
356555082	242	PREDICTED: UPF0559 protein-like [Glycine	1.0	0.995	0.942	1e-127
356549385	242	PREDICTED: UPF0559 protein-like [Glycine	1.0	0.995	0.938	1e-125
357446437	241	hypothetical protein MTR_2g012810 [Medic	0.987	0.987	0.941	1e-125
388507964	241	unknown [Medicago truncatula]	0.987	0.987	0.937	1e-124
359494870	293	PREDICTED: UPF0559 protein-like [Vitis v	1.0	0.822	0.771	1e-121
296080906	294	unnamed protein product [Vitis vinifera]	1.0	0.819	0.765	1e-120
224078908	226	predicted protein [Populus trichocarpa]	0.933	0.995	0.933	1e-117

>gi|255560784|ref|XP_002521405.1| Protein C20orf11, putative [Ricinus communis] gi|223539304|gb|EEF40895.1| Protein C20orf11, putative [Ricinus communis]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 231/242 (95%), Positives = 236/242 (97%), Gaps = 1/242 (0%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLFWIVIRQLAEIEAMA SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA
Sbjct: 46  MSLFWIVIRQLAEIEAMATSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 105

Query: 61  EKFRMESGTE-HIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 119
           EKFR ESGTE  IDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 106 EKFRKESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 165

Query: 120 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 179
           QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDV+NCPVG+LLDI
Sbjct: 166 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVTNCPVGELLDI 225

Query: 180 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDP 239
           SQRLKTASEVNAAILTSQSHEKDPKLPSLLKML+WAQNQLDEKAAYPRINDL+TA LEDP
Sbjct: 226 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLIWAQNQLDEKAAYPRINDLSTAMLEDP 285

Query: 240 AI 241
           A+
Sbjct: 286 AV 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113997|ref|XP_002316637.1| predicted protein [Populus trichocarpa] gi|222859702|gb|EEE97249.1| predicted protein [Populus trichocarpa]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 231/242 (95%), Positives = 234/242 (96%), Gaps = 1/242 (0%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLFWIVIRQLAEIEAMA SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA
Sbjct: 1   MSLFWIVIRQLAEIEAMATSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60

Query: 61  EKFRMESGTE-HIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 119
           EKF+MESGTE  IDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFQMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 120 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 179
           QR IELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG LLDI
Sbjct: 121 QRFIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGGLLDI 180

Query: 180 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDP 239
           SQRLKTASEVNAAILTSQS EKDPKLPSLLKMLLWAQNQLDEKA YPRINDL+TA LEDP
Sbjct: 181 SQRLKTASEVNAAILTSQSREKDPKLPSLLKMLLWAQNQLDEKAVYPRINDLSTAMLEDP 240

Query: 240 AI 241
           A+
Sbjct: 241 AV 242

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457706|ref|XP_004146589.1| PREDICTED: glucose-induced degradation protein 8 homolog [Cucumis sativus] gi|449488429|ref|XP_004158034.1| PREDICTED: glucose-induced degradation protein 8 homolog [Cucumis sativus]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/242 (94%), Positives = 233/242 (96%), Gaps = 1/242 (0%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLFWIVIRQ AE EAMA SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA
Sbjct: 1   MSLFWIVIRQFAENEAMATSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60

Query: 61  EKFRMESGTE-HIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 119
           EKFRMESG E  IDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFRMESGAEPEIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 120 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 179
           QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPV DLLDI
Sbjct: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVRDLLDI 180

Query: 180 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDP 239
           SQRLKTASEVNAAILTSQSHEKDPKLPSLLKML+WAQ+QLDEKAAYPRINDL+TA LEDP
Sbjct: 181 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLMWAQDQLDEKAAYPRINDLSTAMLEDP 240

Query: 240 AI 241
            +
Sbjct: 241 PV 242

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555082|ref|XP_003545868.1| PREDICTED: UPF0559 protein-like [Glycine max]

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/242 (94%), Positives = 236/242 (97%), Gaps = 1/242 (0%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSL W+VIRQLAEIEAMA SKK+ITREEWEKKL+DVKIRKEDMNKLVMNFLVTEGYV+AA
Sbjct: 1   MSLLWLVIRQLAEIEAMAASKKLITREEWEKKLSDVKIRKEDMNKLVMNFLVTEGYVEAA 60

Query: 61  EKFRMESGTE-HIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 119
           EKFRMESGTE  IDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 120 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 179
           QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG+LLDI
Sbjct: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDI 180

Query: 180 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDP 239
           SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLL AQNQLDEKAAYPR+NDL+TATLEDP
Sbjct: 181 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLCAQNQLDEKAAYPRVNDLSTATLEDP 240

Query: 240 AI 241
           A+
Sbjct: 241 AV 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549385|ref|XP_003543074.1| PREDICTED: UPF0559 protein-like [Glycine max]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/242 (93%), Positives = 235/242 (97%), Gaps = 1/242 (0%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLF + IRQLAEIEAMA SKK+ITREEWEKKL+DVKIRKEDMNKLVMNFLVTEGYV+AA
Sbjct: 1   MSLFLLEIRQLAEIEAMAASKKLITREEWEKKLSDVKIRKEDMNKLVMNFLVTEGYVEAA 60

Query: 61  EKFRMESGTE-HIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 119
           EKFRMESGTE  IDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 120 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 179
           QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG+LLDI
Sbjct: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDI 180

Query: 180 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDP 239
           SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLL AQNQLDEKAAYPR+NDL+TATLEDP
Sbjct: 181 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLCAQNQLDEKAAYPRVNDLSTATLEDP 240

Query: 240 AI 241
           A+
Sbjct: 241 AV 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446437|ref|XP_003593496.1| hypothetical protein MTR_2g012810 [Medicago truncatula] gi|355482544|gb|AES63747.1| hypothetical protein MTR_2g012810 [Medicago truncatula]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/239 (94%), Positives = 233/239 (97%), Gaps = 1/239 (0%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLFWIVIRQLA+IEAMA SKKVITREEWEKKLN+VKIRKEDMNKLVMNFLVTEG+VDAA
Sbjct: 1   MSLFWIVIRQLAQIEAMAASKKVITREEWEKKLNNVKIRKEDMNKLVMNFLVTEGFVDAA 60

Query: 61  EKFRMESGTE-HIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 119
           EKFR ESGTE  IDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFRKESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 120 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 179
           QRLIELIRNGK+EEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG+LLDI
Sbjct: 121 QRLIELIRNGKIEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDI 180

Query: 180 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLED 238
           SQRLKTASEVNAAILTSQSHEKDPKLPSLLKML+WAQNQLDEKAA+PRINDL+TA LED
Sbjct: 181 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLIWAQNQLDEKAAFPRINDLSTAALED 239

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507964|gb|AFK42048.1| unknown [Medicago truncatula]

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/239 (93%), Positives = 232/239 (97%), Gaps = 1/239 (0%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLFWIVIRQLA+IEAMA SKKVITREEWEKKLN+VKIRKEDMNKLVMNFLVTEG+VDAA
Sbjct: 1   MSLFWIVIRQLAQIEAMAASKKVITREEWEKKLNNVKIRKEDMNKLVMNFLVTEGFVDAA 60

Query: 61  EKFRMESGTE-HIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 119
           EKFR ESGTE  IDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFRKESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 120 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 179
           QRLIELIRNGK+EEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG+LLDI
Sbjct: 121 QRLIELIRNGKIEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDI 180

Query: 180 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLED 238
           SQRLKTASEVNAAILTSQ HEKDPKLPSLLKML+WAQNQLDEKAA+PRINDL+TA LED
Sbjct: 181 SQRLKTASEVNAAILTSQRHEKDPKLPSLLKMLIWAQNQLDEKAAFPRINDLSTAALED 239

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494870|ref|XP_002264581.2| PREDICTED: UPF0559 protein-like [Vitis vinifera]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/293 (77%), Positives = 236/293 (80%), Gaps = 52/293 (17%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLF IVIR+L EIE+MA SKKVITREEWE+KLNDVKIRKEDMNKLVMNFLVTEGYVDAA
Sbjct: 1   MSLFCIVIRELEEIESMASSKKVITREEWERKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60

Query: 61  EKFRMESGTEHIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPE--------------- 105
           EKFRMESGTEHIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPE               
Sbjct: 61  EKFRMESGTEHIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEGYVDAAEKFRMESGT 120

Query: 106 -------------------------------------ILDTNPQLFFHLQQQRLIELIRN 128
                                                ILDTNPQLFFHLQQQRLIELIRN
Sbjct: 121 EPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRN 180

Query: 129 GKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASE 188
           GKV+EALEFAQEELAPRGEENQSFLEELE+TVALLAFED SNCPVG+LLDISQRLKTASE
Sbjct: 181 GKVDEALEFAQEELAPRGEENQSFLEELEKTVALLAFEDFSNCPVGELLDISQRLKTASE 240

Query: 189 VNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI 241
           VNAAILTSQSHEKDPKLPSLLKML+WAQNQLD+KAAYPRINDL+TA LEDPA+
Sbjct: 241 VNAAILTSQSHEKDPKLPSLLKMLIWAQNQLDDKAAYPRINDLSTARLEDPAV 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296080906|emb|CBI18750.3| unnamed protein product [Vitis vinifera]

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/294 (76%), Positives = 235/294 (79%), Gaps = 53/294 (18%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLF IVIR+L EIE+MA SKKVITREEWE+KLNDVKIRKEDMNKLVMNFLVTEGYVDAA
Sbjct: 1   MSLFCIVIRELEEIESMASSKKVITREEWERKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60

Query: 61  EKFRMESGTE-------------------------------------------------- 70
           EKFRMESGTE                                                  
Sbjct: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEGYVDAAEKFRMESG 120

Query: 71  ---HIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIR 127
               IDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIR
Sbjct: 121 TEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIR 180

Query: 128 NGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTAS 187
           NGKV+EALEFAQEELAPRGEENQSFLEELE+TVALLAFED SNCPVG+LLDISQRLKTAS
Sbjct: 181 NGKVDEALEFAQEELAPRGEENQSFLEELEKTVALLAFEDFSNCPVGELLDISQRLKTAS 240

Query: 188 EVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI 241
           EVNAAILTSQSHEKDPKLPSLLKML+WAQNQLD+KAAYPRINDL+TA LEDPA+
Sbjct: 241 EVNAAILTSQSHEKDPKLPSLLKMLIWAQNQLDDKAAYPRINDLSTARLEDPAV 294

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078908|ref|XP_002305675.1| predicted protein [Populus trichocarpa] gi|222848639|gb|EEE86186.1| predicted protein [Populus trichocarpa]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/226 (93%), Positives = 218/226 (96%), Gaps = 1/226 (0%)

Query: 17  MAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE-HIDLA 75
           MAMSKKVITREEWE+KLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKF+MESG E  IDLA
Sbjct: 1   MAMSKKVITREEWERKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFQMESGAEPDIDLA 60

Query: 76  TITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEAL 135
           TITDRMA KKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKV EAL
Sbjct: 61  TITDRMAAKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVNEAL 120

Query: 136 EFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILT 195
           +FAQEELAPRGEE+ SFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILT
Sbjct: 121 QFAQEELAPRGEEDHSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILT 180

Query: 196 SQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI 241
           SQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRI +L+TA LEDPA+
Sbjct: 181 SQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRIKNLSTAMLEDPAV 226

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
TAIR|locus:2008460	243	AT1G61150 "AT1G61150" [Arabido	0.995	0.987	0.785	2.7e-93
DICTYBASE|DDB_G0279265	228	DDB_G0279265 "UPF0559 protein"	0.900	0.951	0.596	9.4e-66
ZFIN|ZDB-GENE-040426-1669	250	gid8a "GID complex subunit 8 h	0.983	0.948	0.481	6.1e-55
UNIPROTKB|Q5ZKQ7	228	GID8 "Glucose-induced degradat	0.896	0.947	0.495	7.8e-55
UNIPROTKB|Q32L52	228	GID8 "Glucose-induced degradat	0.896	0.947	0.486	3.4e-54
MGI|MGI:1923675	228	Gid8 "GID complex subunit 8 ho	0.896	0.947	0.486	8.9e-54
UNIPROTKB|Q9NWU2	228	GID8 "Glucose-induced degradat	0.896	0.947	0.486	1.5e-53
TAIR|locus:2197404	277	AT1G11110 "AT1G11110" [Arabido	0.925	0.805	0.515	6.3e-53
TAIR|locus:2137926	224	AT4G09300 "AT4G09300" [Arabido	0.896	0.964	0.520	8.3e-51
ASPGD|ASPL0000064925	271	AN7501 [Emericella nidulans (t	0.858	0.763	0.381	6.7e-33

TAIR|locus:2008460 AT1G61150 "AT1G61150" [Arabidopsis thaliana (taxid:3702)]

 Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
 Identities = 190/242 (78%), Positives = 204/242 (84%)

Query:     1 MSLFWIVIRQLAEI-EAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDA 59
             MSLF I I QL E  E MA SKK+ITREEWEKKLN VK+RKEDMN LVMNFLVTEGYV+A
Sbjct:     1 MSLFRIFINQLEEDDEDMATSKKMITREEWEKKLNAVKLRKEDMNTLVMNFLVTEGYVEA 60

Query:    60 AEKFRMESGTE-HIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQ 118
             AEKF+ ESGT+  IDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNP+LFFHLQ
Sbjct:    61 AEKFQRESGTKPEIDLATITDRMAVKKAVQNGNVEDAIEKVNDLNPEILDTNPELFFHLQ 120

Query:   119 QQRLIELIRNGKVXXXXXXXXXXXXPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLD 178
             QQRLIELIR GK             PRGEENQ+FLEELE+TVALL F+D S CPV +LLD
Sbjct:   121 QQRLIELIRQGKTEEALEFAQEELAPRGEENQAFLEELEKTVALLVFDDASTCPVKELLD 180

Query:   179 ISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLED 238
             +S RLKTASEVNAAILTSQSHEKDPKLPSLLKML+WAQ QLDEKA YP INDL+T  LED
Sbjct:   181 LSHRLKTASEVNAAILTSQSHEKDPKLPSLLKMLIWAQTQLDEKAVYPHINDLSTGKLED 240

Query:   239 PA 240
             P+
Sbjct:   241 PS 242

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0279265 DDB_G0279265 "UPF0559 protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
 Identities = 130/218 (59%), Positives = 160/218 (73%)

Query:    21 KKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEH-IDLATITD 79
             KKVI+  EW+ KL +V I K D+NKLVMN+LV EGY +AA KF+ ES T+  +DLA+I D
Sbjct:    11 KKVISTSEWDDKLAEVNISKSDLNKLVMNYLVIEGYQEAAAKFQEESSTQTTVDLASIAD 70

Query:    80 RMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXX 139
             RMA++ A+QCG+VE  IE VNDLNPEILDTNPQL+FHLQQQ+LIELIR G          
Sbjct:    71 RMAIRSAIQCGDVEKGIEIVNDLNPEILDTNPQLYFHLQQQKLIELIRKGMTAEALKFAQ 130

Query:   140 XXXXPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSH 199
                 P+GEEN  FLEELE+T++LL FED +  P+  LLD SQR KTA E+N+AIL SQS 
Sbjct:   131 DELAPQGEENNKFLEELEKTISLLVFEDTAKSPLSSLLDHSQRQKTAGELNSAILLSQSQ 190

Query:   200 EKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLE 237
             +KDPKLP++LK+L WAQ QLD K  YP+I +  T   E
Sbjct:   191 DKDPKLPTILKLLKWAQTQLDSKCIYPKITNTVTGEYE 228

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-040426-1669 gid8a "GID complex subunit 8 homolog a (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 117/243 (48%), Positives = 166/243 (68%)

Query:     3 LFWIVIRQLA--EIEAMAMSKKV--ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVD 58
             + ++VI  L       M+ S+K   IT+EEW  KLN+V I++ DMN+L+MN+LVTEG+ +
Sbjct:     7 MIFVVISCLVYPSTSVMSYSEKPEDITKEEWMDKLNNVHIQRADMNRLIMNYLVTEGFKE 66

Query:    59 AAEKFRMESGTE-HIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHL 117
             AAEKFRMESG E ++DL ++ +R+ +++ V  G +++AI  +N L+PE+LDTN  L+FHL
Sbjct:    67 AAEKFRMESGIEPNVDLDSLDERIKIREMVLKGQIQEAIALINSLHPELLDTNRYLYFHL 126

Query:   118 QQQRLIELIRNGKVXXXXXXXXXXXXPRGEENQSFLEELERTVALLAFEDVSNCPVGDLL 177
             QQQ LIELIR  +              +GEE++  L E+ERT+ALLAF++    P GDLL
Sbjct:   127 QQQHLIELIRLRETEAALEFAQSQLAEQGEESRECLTEMERTLALLAFDNPEESPFGDLL 186

Query:   178 DISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAA-YPRINDLATATL 236
             ++ QR K  SEVN A+L  ++ E  PKL  LLK+LLWAQN+LD+K   Y R+ DL+  T+
Sbjct:   187 NMMQRQKVWSEVNQAVLDYENRESTPKLAKLLKLLLWAQNELDQKKVKYSRMTDLSKGTI 246

Query:   237 EDP 239
             EDP
Sbjct:   247 EDP 249

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q5ZKQ7 GID8 "Glucose-induced degradation protein 8 homolog" [Gallus gallus (taxid:9031)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 108/218 (49%), Positives = 156/218 (71%)

Query:    24 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE-HIDLATITDRMA 82
             IT++EW +KLN++ I++ DMN+L+MN+LVTEG+ +AAEKFRMESG E  +DL T+ +R+ 
Sbjct:    10 ITKDEWMEKLNNLHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query:    83 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 142
             +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    70 IREMILKGQIQEAISLINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query:   143 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 202
               +GEE++  L E+ERT+ALLAF++    P GDLL++ QR K  SEVN A+L  ++ E  
Sbjct:   130 AEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENREST 189

Query:   203 PKLPSLLKMLLWAQNQLDEKAA-YPRINDLATATLEDP 239
             PKL  LLK+LLWAQN+LD+K   YP++ DL+  T+E+P
Sbjct:   190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGTIEEP 227

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q32L52 GID8 "Glucose-induced degradation protein 8 homolog" [Bos taurus (taxid:9913)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 106/218 (48%), Positives = 156/218 (71%)

Query:    24 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE-HIDLATITDRMA 82
             IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG E  +DL T+ +R+ 
Sbjct:    10 ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query:    83 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 142
             +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    70 IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query:   143 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 202
               +GEE++  L E+ERT+ALLAF++  + P GDLL++ QR K  SEVN A+L  ++ E  
Sbjct:   130 AEQGEESRECLTEMERTLALLAFDNPEDSPFGDLLNMMQRQKVWSEVNQAVLDYENREST 189

Query:   203 PKLPSLLKMLLWAQNQLDEKAA-YPRINDLATATLEDP 239
             PKL  LLK+LLWAQN+LD+K   YP++ DL+   +E+P
Sbjct:   190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEP 227

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1923675 Gid8 "GID complex subunit 8 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 106/218 (48%), Positives = 153/218 (70%)

Query:    24 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE-HIDLATITDRMA 82
             IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG E  +DL T+ +R+ 
Sbjct:    10 ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query:    83 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 142
             +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    70 IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query:   143 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 202
               +GEE++  L E+ERT+ALLAF+     P GDLL + QR K  SEVN A+L  ++ E  
Sbjct:   130 AEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHMMQRQKVWSEVNQAVLDYENREST 189

Query:   203 PKLPSLLKMLLWAQNQLDEKAA-YPRINDLATATLEDP 239
             PKL  LLK+LLWAQN+LD+K   YP++ DL+   +E+P
Sbjct:   190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEP 227

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9NWU2 GID8 "Glucose-induced degradation protein 8 homolog" [Homo sapiens (taxid:9606)]

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 106/218 (48%), Positives = 152/218 (69%)

Query:    24 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE-HIDLATITDRMA 82
             IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG E  +DL T+ +R+ 
Sbjct:    10 ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query:    83 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 142
             +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    70 IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query:   143 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 202
               +GEE++  L E+ERT+ALLAF+     P GDLL   QR K  SEVN A+L  ++ E  
Sbjct:   130 AEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHTMQRQKVWSEVNQAVLDYENREST 189

Query:   203 PKLPSLLKMLLWAQNQLDEKAA-YPRINDLATATLEDP 239
             PKL  LLK+LLWAQN+LD+K   YP++ DL+   +E+P
Sbjct:   190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEP 227

GO:0005634 "nucleus" evidence=IEA

TAIR|locus:2197404 AT1G11110 "AT1G11110" [Arabidopsis thaliana (taxid:3702)]

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 120/233 (51%), Positives = 159/233 (68%)

Query:    10 QLAEIEAMAMS---KKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRME 66
             Q++E E   +    KK+I  + WE+ L   +IRKEDMN+LVMNFLV EGY++A EKF+ E
Sbjct:    39 QISENEEFVIQEQPKKLIMSDVWEQYLTTAEIRKEDMNRLVMNFLVVEGYLEAVEKFQKE 98

Query:    67 SGTEHIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELI 126
             SGT+ + +A+I+DR+AVK+ ++ G++EDA+EK+N +NPEIL TN    F L QQR IE I
Sbjct:    99 SGTKQVGVASISDRLAVKRDIESGDLEDAVEKLNAINPEILKTN----FSLNQQRFIERI 154

Query:   127 RNG-KVXXXXXXXXXXXXPRGEENQSFLEELERTVALLAFEDVSNCPVGD--LLDISQRL 183
             R G  +            P  E+N +FLEELE+T+A+L F D+ + P  +  LLD S+  
Sbjct:   155 RIGVTIKETFNFAEKELKPLVEQNLAFLEELEKTMAILRFRDLPDIPEAERELLDNSRWF 214

Query:   184 KTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATL 236
             KTA+EVNAAILTSQ+  K PKL  LLKML W QNQLDEK  YPR++ L T  L
Sbjct:   215 KTAAEVNAAILTSQTGLKCPKLLDLLKMLTWTQNQLDEKVEYPRMSVLPTGQL 267

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2137926 AT4G09300 "AT4G09300" [Arabidopsis thaliana (taxid:3702)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 116/223 (52%), Positives = 146/223 (65%)

Query:    17 MAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGT-EHIDLA 75
             M   K V+T E+WE KL+DV+I  EDMN+LVMN LV EGY +AAEKF+ ES T    DLA
Sbjct:     1 METPKIVVTSEDWESKLSDVEILIEDMNRLVMNLLVAEGYREAAEKFKEESITMPEEDLA 60

Query:    76 TITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXX 135
             ++ +R+ V KA++  N+EDAIEK+N LNPEI+ T+    FHL QQ LIELIR  K     
Sbjct:    61 SMNERLEVIKAIESRNLEDAIEKLNALNPEIIKTS----FHLHQQMLIELIREKKTEEAV 116

Query:   136 XXXXXXXXPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILT 195
                     P  EEN++   ELE+TV +L  E + NCP  +L   SQ ++TAS VN AI T
Sbjct:   117 AFAQEKLAPLAEENEALQRELEKTVCILVTEGLPNCPSRELFHNSQWIRTASHVNEAIHT 176

Query:   196 SQSHEKDPKLPSLLKMLLWAQNQLDEKAAY--PRINDLATATL 236
             SQ+ EK P+L  LLK L+W QNQLDEK  Y  PR+ND +T  L
Sbjct:   177 SQTGEKGPELERLLKELIWTQNQLDEKTVYVYPRMNDFSTGQL 219

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000064925 AN7501 [Emericella nidulans (taxid:162425)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 82/215 (38%), Positives = 124/215 (57%)

Query:    25 TREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEHIDLATITDRMAVK 84
             T   +E+K+++VK  K DMN+LVM++LVT GY  AA+KF +E+  E +D+ +I +R+ ++
Sbjct:    17 TWHHFERKVDEVKPSKTDMNRLVMDYLVTNGYPAAAQKFALEANIEPVDVESIRERVEIR 76

Query:    85 KAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRN------GKVXXXXXXX 138
              A+  GN++ AIEK+N+LNP+ILD NP L F L + +L+ELIR+      G +       
Sbjct:    77 TAIYSGNIQAAIEKINELNPQILDENPSLHFSLLRLQLVELIRSCSVNPDGDITPALEFA 136

Query:   139 XXXXXPRGEENQSFLEELERTVALLAFEDVSNCP-VGDLLDISQRLKTASEVNAAILTSQ 197
                  PR   N  FLE+LE+T+ALL +   +  P +  LL    R    ++VNAAIL  Q
Sbjct:   137 TSQLAPRAPTNPQFLEDLEKTLALLIYPKENLTPSLAPLLHSDLRRDIYAKVNAAILQDQ 196

Query:   198 SHEKDPKLPSLLKMLLWAQNQLDE-KAAYPRINDL 231
                 +  L    ++  WA+ +  E K   P   DL
Sbjct:   197 GARTEALLCDFARLYAWAEQKAREAKKDIPDKLDL 231

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9NWU2	GID8_HUMAN	No assigned EC number	0.5275	0.8962	0.9473	yes	no
Q54X16	GID8_DICDI	No assigned EC number	0.6376	0.9004	0.9517	yes	no
Q32L52	GID8_BOVIN	No assigned EC number	0.5275	0.8962	0.9473	yes	no
Q9D7M1	GID8_MOUSE	No assigned EC number	0.5275	0.8962	0.9473	yes	no
Q5ZKQ7	GID8_CHICK	No assigned EC number	0.5366	0.8962	0.9473	yes	no
A7SWD3	GID8_NEMVE	No assigned EC number	0.5023	0.8921	0.9555	N/A	no
Q6PC55	GID8_DANRE	No assigned EC number	0.5418	0.9253	0.9780	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_kg.C_LG_XI000005 hypothetical protein (243 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	241
pfam10607	144	pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif	2e-41
smart00757	99	smart00757, CRA, CT11-RanBPM	3e-25
smart00668	58	smart00668, CTLH, C-terminal to LisH motif	2e-11
pfam08513	27	pfam08513, LisH, LisH	1e-06
smart00667	34	smart00667, LisH, Lissencephaly type-1-like homolo	4e-06

>gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain

 Score =  138 bits (349), Expect = 2e-41
 Identities = 56/146 (38%), Positives = 83/146 (56%), Gaps = 3/146 (2%)

Query: 76  TITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEAL 135
              +R  +++++  G++E+A+E  N+  PE+L  N  L F L+ Q+ IELIR GK+ EAL
Sbjct: 1   VFKERNKIRESLLNGDLEEALEWCNENKPELLKINSNLEFELRLQQFIELIREGKILEAL 60

Query: 136 EFAQEELAPRGEENQSFLEELERTVALLAFEDVSNC-PVGDLLDISQRLKTASEVNAAIL 194
           E+A+E LAP   E    L+E+++ + LLAF D ++  P   LL  S+  K A+E N AIL
Sbjct: 61  EYARENLAPFFNE--QHLKEIQKLMGLLAFPDPTDSSPYKSLLSPSRWEKLANEFNRAIL 118

Query: 195 TSQSHEKDPKLPSLLKMLLWAQNQLD 220
                  +  L  LLK  L A   L 
Sbjct: 119 KLLGLSSESPLEILLKAGLSALKTLL 144

RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif. Length = 144

>gnl|CDD|214806 smart00757, CRA, CT11-RanBPM

 Score = 95.1 bits (237), Expect = 3e-25
 Identities = 44/96 (45%), Positives = 59/96 (61%), Gaps = 2/96 (2%)

Query: 129 GKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNC-PVGDLLDISQRLKTAS 187
           GK+EEAL +A+E LAP  +E++ FL+ELE+T+ALLA+ D +   P  +LL  SQR K A 
Sbjct: 1   GKIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAE 60

Query: 188 EVNAAILTSQS-HEKDPKLPSLLKMLLWAQNQLDEK 222
           E+N+AIL        +  L  LL   L A   L EK
Sbjct: 61  ELNSAILELLHGKSSESPLEILLSAGLAALKTLLEK 96

protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi). Length = 99

>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif

 Score = 57.6 bits (140), Expect = 2e-11
 Identities = 19/58 (32%), Positives = 39/58 (67%)

Query: 76  TITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEE 133
              +R  +++ +  G+ ++A+E ++ L P +L+ N +L F L++Q+ +EL+R GK+EE
Sbjct: 1   EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKLEE 58

Alpha-helical motif of unknown function. Length = 58

>gnl|CDD|149534 pfam08513, LisH, LisH

 Score = 43.8 bits (105), Expect = 1e-06
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 41 EDMNKLVMNFLVTEGYVDAAEKFRMES 67
          E++N+L+ ++LV  GY + AE F  ES
Sbjct: 1  EELNRLIYDYLVKSGYKETAEAFAKES 27

The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex. Length = 27

>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif

 Score = 42.4 bits (101), Expect = 4e-06
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 38 IRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE 70
          I + ++N+L++ +L+  GY + AE  + ESG  
Sbjct: 1  ISRSELNRLILEYLLRNGYEETAETLQKESGLS 33

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	241
KOG2659	228	consensus LisH motif-containing protein [Cytoskele	100.0
PF10607	145	CLTH: CTLH/CRA C-terminal to LisH motif domain; In	99.97
KOG0396	389	consensus Uncharacterized conserved protein [Funct	99.96
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	99.9
smart00757	99	CRA CT11-RanBPM. protein-protein interaction domai	99.7
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.37
smart00668	58	CTLH C-terminal to LisH motif. Alpha-helical motif	99.33
KOG0275	508	consensus Conserved WD40 repeat-containing protein	98.76
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	98.41
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	98.21
KOG1477	469	consensus SPRY domain-containing proteins [General	98.18
COG5109	396	Uncharacterized conserved protein, contains RING Z	97.31
KOG1333	241	consensus Uncharacterized conserved protein [Funct	95.23
PF09398	81	FOP_dimer: FOP N terminal dimerisation domain; Int	91.86

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]

Probab=100.00  E-value=4.7e-41  Score=281.20  Aligned_cols=218  Identities=58%  Similarity=0.886  Sum_probs=210.6

Q ss_pred             cCCChHHHHHHhccCCCCHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCC--cCcHHhHHHHHHHHHHHhcCCHHHHHHHH
Q 026282           22 KVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE--HIDLATITDRMAVKKAVQCGNVEDAIEKV   99 (241)
Q Consensus        22 ~~~~~~~~~~~l~~~~~~~~~l~~LI~~yL~~~Gy~~ta~~l~~es~~~--~~d~~~~~~r~~I~~~I~~G~~~~Ai~~i   99 (241)
                      +.++.+.|...+.++.+.+.++|+||++||+++||.++|..|++|+|++  ..|.+.+..|.+|+.+|..|+++.|++.+
T Consensus         8 ~~~~~~~w~~~~~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~i   87 (228)
T KOG2659|consen    8 SFSTKEEWEEQLMKVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKV   87 (228)
T ss_pred             ccCchhhhHHHHhccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHH
Confidence            5588999999999999999999999999999999999999999999999  48999999999999999999999999999


Q ss_pred             HhhChhhhhcCCcchhhhHHHHHHHHHhcCCHHHHHHHHHHhccccccCCHHHHHHHHHHhhhhhccCCCCCccccccCh
Q 026282          100 NDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI  179 (241)
Q Consensus       100 ~~~~p~l~~~~~~l~F~L~~q~fIEli~~~~~~~Al~~~r~~l~p~~~~~~~~~~~l~~~~~LL~y~~~~~sp~~~l~~~  179 (241)
                      +++.|.++..+..+.|.|++|++|||||.|...+|++|+|.+++|++..+++.+.+++++|++|+|++++.+|+++++..
T Consensus        88 n~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~~~  167 (228)
T KOG2659|consen   88 NQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELLSQ  167 (228)
T ss_pred             HHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998899999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhhh-hcCCCCccCCCCcccCCC
Q 026282          180 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP  239 (241)
Q Consensus       180 ~~r~~la~~~n~~il~~~g~~~~s~Le~llk~~~~~q~~L~~-k~~~p~~~~~~~~~~~~~  239 (241)
                      ++|.++|+.+|++|+.+++....+.|..|++...|++..+.. +..+|.+.++++|.++.|
T Consensus       168 s~R~kvA~~vN~aiL~~~~~~~~~~l~~llk~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  228 (228)
T KOG2659|consen  168 SLRQKVASEVNSAILASQEHESEPKLPFLLKLISWAQEELDREKFSEPHFKDLTKIKSEEP  228 (228)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhHhhccccccCCccccccCCC
Confidence            999999999999999999988899999999999999999855 578999999999999876

>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10

Probab=99.97  E-value=1.3e-29  Score=202.04  Aligned_cols=140  Identities=38%  Similarity=0.586  Sum_probs=132.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCCcchhhhHHHHHHHHHhcCCHHHHHHHHHHhccccccCCHHHHHHH
Q 026282           77 ITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEEL  156 (241)
Q Consensus        77 ~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~l~F~L~~q~fIEli~~~~~~~Al~~~r~~l~p~~~~~~~~~~~l  156 (241)
                      |.+|+.|+++|.+||+++|++||++++|.+++.++.++|.|++|+|||+|+.|++.+|++|+|++++|+..   ...+++
T Consensus         2 ~~~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~---~~~~~l   78 (145)
T PF10607_consen    2 FKERKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFND---EFLEEL   78 (145)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHH---HHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999976654   458899


Q ss_pred             HHHhhhhhccCCCC---CccccccChhhHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHh
Q 026282          157 ERTVALLAFEDVSN---CPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQL  219 (241)
Q Consensus       157 ~~~~~LL~y~~~~~---sp~~~l~~~~~r~~la~~~n~~il~~~g~~~~s~Le~llk~~~~~q~~L  219 (241)
                      +++|++|+|+++.+   +||++++++++|+.|++.||++++..+|.++.|+|+.+++++.++...|
T Consensus        79 ~~~~~lL~~~~~~~~~~s~~~~l~~~~~~~~la~~~~~~~l~~~~~~~~s~L~~~~~~g~~~l~~l  144 (145)
T PF10607_consen   79 KKLMSLLAYPDPEEPLPSPYKELLSPERREELAEEFNSAILKSYGLPKESPLEVILKAGLSALKTL  144 (145)
T ss_pred             HHHHHHHHcCCcccccchHHHHHhChHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhc
Confidence            99999999999987   7999999999999999999999999999999999999999999887653

RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.96  E-value=1.1e-28  Score=217.16  Aligned_cols=177  Identities=23%  Similarity=0.335  Sum_probs=167.6

Q ss_pred             CHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCC-cCcHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCCcchhhh
Q 026282           39 RKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE-HIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHL  117 (241)
Q Consensus        39 ~~~~l~~LI~~yL~~~Gy~~ta~~l~~es~~~-~~d~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~l~F~L  117 (241)
                      +++.++++|++|+.|+||++||..|.++++++ .+|.+.+...+.|+++|++|++.+|+.||++|+..|.+.+|.++|.+
T Consensus       114 ~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~~S~lEf~l  193 (389)
T KOG0396|consen  114 PRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKEESSLEFQL  193 (389)
T ss_pred             HHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccchhhhHH
Confidence            57889999999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhccccccCCHHHHHHHHHHhhhhhccC-CCCCccccccChhhHHHHHHHHHHHHHhh
Q 026282          118 QQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFED-VSNCPVGDLLDISQRLKTASEVNAAILTS  196 (241)
Q Consensus       118 ~~q~fIEli~~~~~~~Al~~~r~~l~p~~~~~~~~~~~l~~~~~LL~y~~-~~~sp~~~l~~~~~r~~la~~~n~~il~~  196 (241)
                      +.|+|||||+.+++.+||+|+|++|+|+++.+   .++++.+||+++|+. ++.++|..+++..||+.+++.|-+...+.
T Consensus       194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~---~~~Lk~a~g~laF~~~t~~sky~~l~~~~rw~~l~~lF~s~a~~l  270 (389)
T KOG0396|consen  194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSH---KSDLKLAMGLLAFPKYTSSSKYLNLLTADRWSVLADLFLSEALKL  270 (389)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhh---HHHHHHHHHhhcCccccCcccccCcccHHHHHHHHHHhhHHHHHH
Confidence            99999999999999999999999999998755   789999999999995 55677999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHH
Q 026282          197 QSHEKDPKLPSLLKMLLWAQNQ  218 (241)
Q Consensus       197 ~g~~~~s~Le~llk~~~~~q~~  218 (241)
                      +|.+..|+|-..++..+.++..
T Consensus       271 ~~i~~~~~L~~~l~~GLsalKT  292 (389)
T KOG0396|consen  271 FGIPINPALTIYLQAGLSALKT  292 (389)
T ss_pred             hCCCCCcHHHHHHHhhhhhccc
Confidence            9999999999999988766655

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.8e-22  Score=179.68  Aligned_cols=199  Identities=19%  Similarity=0.290  Sum_probs=171.2

Q ss_pred             ccCCCCHHH-HHHHHHHHHHHhCHHHHHHHHHHHhCCC-c--CcHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhc
Q 026282           34 NDVKIRKED-MNKLVMNFLVTEGYVDAAEKFRMESGTE-H--IDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDT  109 (241)
Q Consensus        34 ~~~~~~~~~-l~~LI~~yL~~~Gy~~ta~~l~~es~~~-~--~d~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~  109 (241)
                      .++..+... ++.+|..|++++|..++|..|++|+|.. .  .....|.+.++|.++|..||+.+|++|+..++..|...
T Consensus       109 ~~v~~~~~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~  188 (394)
T KOG2817|consen  109 NSVDFDTSQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK  188 (394)
T ss_pred             cCcChhHHHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc
Confidence            345555544 5999999999999999999999999988 3  45677899999999999999999999999999999999


Q ss_pred             CCcchhhhHHHHHHHHHhcCCHH--HHHHHHHHhccccccCCHHHHHHHHHHhhhhhccC--CCCCccccccChhhHHHH
Q 026282          110 NPQLFFHLQQQRLIELIRNGKVE--EALEFAQEELAPRGEENQSFLEELERTVALLAFED--VSNCPVGDLLDISQRLKT  185 (241)
Q Consensus       110 ~~~l~F~L~~q~fIEli~~~~~~--~Al~~~r~~l~p~~~~~~~~~~~l~~~~~LL~y~~--~~~sp~~~l~~~~~r~~l  185 (241)
                      ++.|+|.|+.++|+++++.|...  +||.|+|++++||+.++   .++++.+|+++.|-.  .+++||.+++++..|..+
T Consensus       189 ~s~LE~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~---~~eIQklm~sl~~l~~gl~~spy~~~ls~~~w~~~  265 (394)
T KOG2817|consen  189 SSSLEFKLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADH---LREIQKLMGSLLYLRNGLEKSPYSEILSPKLWKEL  265 (394)
T ss_pred             cccHHHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccch---HHHHHHHHHHHHHHHcCCCCCChHHHhCHHHHHHH
Confidence            99999999999999999988655  99999999999998776   789999999998873  468999999999999999


Q ss_pred             HHHHHHHHHhhCCCCCCCcHHHHHHHHHHHH-H-------------HhhhhcCCCCccCCCCcc
Q 026282          186 ASEVNAAILTSQSHEKDPKLPSLLKMLLWAQ-N-------------QLDEKAAYPRINDLATAT  235 (241)
Q Consensus       186 a~~~n~~il~~~g~~~~s~Le~llk~~~~~q-~-------------~L~~k~~~p~~~~~~~~~  235 (241)
                      ...|-+..+..+|.+.+|+|..++.....+- .             ++..++..|--++|+.+.
T Consensus       266 ~~~f~r~ycallg~s~eSPL~v~v~aG~~Alp~Llk~~~v~~~~~~~W~~~deLPveIeL~~~~  329 (394)
T KOG2817|consen  266 TEEFTREYCALLGISVESPLSVLVNAGCIALPQLLKYKSVMELKHGEWNTKDELPVEIELGKEY  329 (394)
T ss_pred             HHHHHHHHHHHcCCCccCcHHHHHHhhHHHHHHHHHHHHHHHHhccCccccccCccceeccccc
Confidence            9999999999999999998877776553221 1             134456788777877765

>smart00757 CRA CT11-RanBPM

Probab=99.70  E-value=1.8e-16  Score=118.01  Aligned_cols=93  Identities=46%  Similarity=0.568  Sum_probs=87.2

Q ss_pred             CHHHHHHHHHHhccccccCCHHHHHHHHHHhhhhhccCC-CCCccccccChhhHHHHHHHHHHHHHhhC-CCCCCCcHHH
Q 026282          130 KVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDV-SNCPVGDLLDISQRLKTASEVNAAILTSQ-SHEKDPKLPS  207 (241)
Q Consensus       130 ~~~~Al~~~r~~l~p~~~~~~~~~~~l~~~~~LL~y~~~-~~sp~~~l~~~~~r~~la~~~n~~il~~~-g~~~~s~Le~  207 (241)
                      ++.+||+|||++++|+...++...++++++|++|+|+++ +.+||++++++++|..+++.||++++..+ |.+.+|.|+.
T Consensus         2 ~~~eAi~yar~~l~~~~~~~~~~~~el~~~m~llaf~~~~~~sp~~~ll~~~~~~~la~~~n~~~l~~~~~~~~~s~L~~   81 (99)
T smart00757        2 KIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAEELNSAILELLHGKSSESPLEI   81 (99)
T ss_pred             cHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHhcCCCCCCccHHHHCCHHHHHHHHHHHHHHHHHHccCCCCCChHHH
Confidence            578999999999999998887778899999999999998 88999999999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHhhhh
Q 026282          208 LLKMLLWAQNQLDEK  222 (241)
Q Consensus       208 llk~~~~~q~~L~~k  222 (241)
                      ++++..|++..+..+
T Consensus        82 ~~~~~~~~~~~l~~~   96 (99)
T smart00757       82 LLSAGLAALKTLLEK   96 (99)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999988654

protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi)

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.37  E-value=5.8e-12  Score=113.17  Aligned_cols=168  Identities=15%  Similarity=0.166  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHhCCC--cCcHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCCcchhhh
Q 026282           40 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTE--HIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHL  117 (241)
Q Consensus        40 ~~~l~~LI~~yL~~~Gy~~ta~~l~~es~~~--~~d~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~l~F~L  117 (241)
                      +.++.+++.+.|+..||.+++..++.|+|+-  ..+.      +.+.+++++|+|+.++.-+....-...+......|.+
T Consensus        17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~------klf~q~vlqg~w~q~v~~~~~i~~~de~~~~ea~fLv   90 (519)
T KOG0293|consen   17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATT------KLFDQQVLQGQWDQQVMSLVRISFEDERNRKEAMFLV   90 (519)
T ss_pred             cchhhHhHHHHHHhcCccccchhhHHhhCcccccchH------HHHHHHHHcccHHHHHHHHhhccCcchhhhHHHHHHH
Confidence            6778999999999999999999999999998  3333      6689999999999999888766333355567899999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhccccccCCHHHHHHHHHHhhhhhccCCCCC-cccc-ccChhhHHHHHHHHHHHHHh
Q 026282          118 QQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNC-PVGD-LLDISQRLKTASEVNAAILT  195 (241)
Q Consensus       118 ~~q~fIEli~~~~~~~Al~~~r~~l~p~~~~~~~~~~~l~~~~~LL~y~~~~~s-p~~~-l~~~~~r~~la~~~n~~il~  195 (241)
                      .+|.|+|+++.|++..|+...|..+.++...    .+++.++.+.|.+++...+ .... -.....|.+|.+++.+.|.+
T Consensus        91 ~kQ~fLEf~k~~~is~al~~l~~~~~~lr~~----~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p  166 (519)
T KOG0293|consen   91 NKQIFLEFLKTGSISHALPVLRNPVLYLRKN----KKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPP  166 (519)
T ss_pred             HHHHHHHHHhhccHhhhhHhhhcchhhhhhh----HHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCH
Confidence            9999999999999999999999888887654    4667777778887743211 1111 11235689999999998877


Q ss_pred             hCCCCCCCcHHHHHHHHHHHHHH
Q 026282          196 SQSHEKDPKLPSLLKMLLWAQNQ  218 (241)
Q Consensus       196 ~~g~~~~s~Le~llk~~~~~q~~  218 (241)
                      .-- .|+-+||.|++|++..|..
T Consensus       167 ~il-lP~rRLehLl~qAv~~Q~d  188 (519)
T KOG0293|consen  167 NIL-LPKRRLEHLLEQAVKYQRD  188 (519)
T ss_pred             hhc-CChHHHHHHHHHHHHHHHh
Confidence            665 4688999999999988855

>smart00668 CTLH C-terminal to LisH motif

Probab=99.33  E-value=2.5e-12  Score=86.33  Aligned_cols=55  Identities=31%  Similarity=0.669  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCCcchhhhHHHHHHHHHhcCCH
Q 026282           77 ITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKV  131 (241)
Q Consensus        77 ~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~l~F~L~~q~fIEli~~~~~  131 (241)
                      +..+..|+++|+.|+|++|++||+.++|.+.+.++.+.|.|++|+|+|+++.++.
T Consensus         2 ~~~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~L~~q~~lell~~~~~   56 (58)
T smart00668        2 FDERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKL   56 (58)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhHHHHHHHHHHHHcCCc
Confidence            5678999999999999999999999999999999999999999999999998764

Alpha-helical motif of unknown function.

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=98.76  E-value=8.4e-08  Score=84.60  Aligned_cols=164  Identities=19%  Similarity=0.245  Sum_probs=121.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCC--cCcHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCCcc
Q 026282           36 VKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE--HIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQL  113 (241)
Q Consensus        36 ~~~~~~~l~~LI~~yL~~~Gy~~ta~~l~~es~~~--~~d~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~l  113 (241)
                      +.+...++.|||.+||..+....|...|.+|+++.  .+|.     ...+.+.|.+|.||.++.-++..+.     ...-
T Consensus         3 ieiessdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDS-----vd~Fv~dI~sG~WD~VL~~vqsLKL-----P~kk   72 (508)
T KOG0275|consen    3 IEIESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDS-----VDGFVNDINSGHWDTVLKTVQSLKL-----PDKK   72 (508)
T ss_pred             eeeecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechh-----HHHHHHhcccCchHHHHHHHHhccC-----chhH
Confidence            45556789999999999999999999999999887  4443     4568899999999999999987652     2334


Q ss_pred             hhhhHHHHHHHHHhcCCHHHHHHHHHHhccccc---cCCHHHHHHHHHHhhhh--hccCCCCCccccccChhhHHHHHHH
Q 026282          114 FFHLQQQRLIELIRNGKVEEALEFAQEELAPRG---EENQSFLEELERTVALL--AFEDVSNCPVGDLLDISQRLKTASE  188 (241)
Q Consensus       114 ~F~L~~q~fIEli~~~~~~~Al~~~r~~l~p~~---~~~~~~~~~l~~~~~LL--~y~~~~~sp~~~l~~~~~r~~la~~  188 (241)
                      ...|+.|-.+|||.-..+..|-..+|+. .|..   ...|+..-.++   .||  .|.||.+. |++--...+|..+|..
T Consensus        73 L~dLYEqivlEliELREL~tAR~~lRQT-dpM~~lKQ~~peRy~~lE---~ll~R~YFDp~Ea-Y~dssKEkrRa~IAQ~  147 (508)
T KOG0275|consen   73 LIDLYEQIVLELIELRELGTARSLLRQT-DPMIMLKQIQPERYIRLE---NLLNRSYFDPREA-YGDSSKEKRRAVIAQA  147 (508)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHhcc-CceehhhccChHHHHHHH---HHhcccccChhhh-cCcchHHHHHHHHHHH
Confidence            5789999999999988888888888854 3432   22344344455   455  36677543 7774455677777766


Q ss_pred             HHHHHHhhCCCCCCCcHHHHHHHHHHHHHH
Q 026282          189 VNAAILTSQSHEKDPKLPSLLKMLLWAQNQ  218 (241)
Q Consensus       189 ~n~~il~~~g~~~~s~Le~llk~~~~~q~~  218 (241)
                      +...    ....++|+|..|+.|++.+|+.
T Consensus       148 ls~E----V~VVppSRLlaLlGQaLKWQqH  173 (508)
T KOG0275|consen  148 LSGE----VHVVPPSRLLALLGQALKWQQH  173 (508)
T ss_pred             hcCc----eEEcChHHHHHHHHHHhhhHhh
Confidence            6543    3445789999999999755543

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=98.41  E-value=4.3e-07  Score=51.60  Aligned_cols=27  Identities=37%  Similarity=0.811  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHh
Q 026282           41 EDMNKLVMNFLVTEGYVDAAEKFRMES   67 (241)
Q Consensus        41 ~~l~~LI~~yL~~~Gy~~ta~~l~~es   67 (241)
                      ++||++|.+||.++||.+||.+|.+|+
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            469999999999999999999999985

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=98.21  E-value=3e-06  Score=50.03  Aligned_cols=32  Identities=31%  Similarity=0.754  Sum_probs=29.3

Q ss_pred             CHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCC
Q 026282           39 RKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE   70 (241)
Q Consensus        39 ~~~~l~~LI~~yL~~~Gy~~ta~~l~~es~~~   70 (241)
                      .+.+++++|++||.++||.+||.+|++|+|+.
T Consensus         2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        2 SRSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            36789999999999999999999999999864

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]

Probab=98.18  E-value=7.8e-07  Score=83.45  Aligned_cols=178  Identities=24%  Similarity=0.191  Sum_probs=138.2

Q ss_pred             HHHHHHHHHHHHhCHHHHHHHHHHHhCCC--c---CcHHhH--------HHHHHHHHHHhcCCHHHHHHHHHhhChhhhh
Q 026282           42 DMNKLVMNFLVTEGYVDAAEKFRMESGTE--H---IDLATI--------TDRMAVKKAVQCGNVEDAIEKVNDLNPEILD  108 (241)
Q Consensus        42 ~l~~LI~~yL~~~Gy~~ta~~l~~es~~~--~---~d~~~~--------~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~  108 (241)
                      .....+-.|+++.|+.+++..++..+.-.  +   .....+        ..+.....-+-.|.+..+.+.+.+..+....
T Consensus       251 l~t~~~~~~~l~~~~~~s~~~~s~~~~~~~~~~~~~e~~s~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~  330 (469)
T KOG1477|consen  251 LSTVPYPYFLLPGGYEESIAYFSTGARRFNDPFTGKEENSIDAVGSQTDKIGLDYHQRKGRGQFTRNGAYNAALIPTYRK  330 (469)
T ss_pred             ccCCCccceecCcchhhhhhhhcchhhccCCcccchhhhhhhccccccchhhhhhhhhcCcceeechhhhcccccccccc
Confidence            34468889999999999999998876543  0   001111        1234444444445566666666555555444


Q ss_pred             -------cCCcchhhhHHHHHHHHHhcCCHHHHHHHHHHhcccccc--CCHHHHHHHHHHhhhhhccCCCCCccccccCh
Q 026282          109 -------TNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGE--ENQSFLEELERTVALLAFEDVSNCPVGDLLDI  179 (241)
Q Consensus       109 -------~~~~l~F~L~~q~fIEli~~~~~~~Al~~~r~~l~p~~~--~~~~~~~~l~~~~~LL~y~~~~~sp~~~l~~~  179 (241)
                             ..+..-+.+.|+.++.+.+.+.+...+++.+.++++...  .+......++.+++|++|.+|..+|.....++
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~v~~~~~g~v~~e~~~~k~~l~~~~g~~~~~~~~~~~~~s~~Llays~p~~s~~g~~~~~  410 (469)
T KOG1477|consen  331 VGQVFEVDYPQRGAKDPCGLHVNLGRAGFVFIEANAKKWELAKDYGIKKNSAAVGMLSDSSSLLAYSDPEESPVGYLLDP  410 (469)
T ss_pred             cceeecccccchhhccchhhhhhHHHHHHHHHHHHHHHHhhhhhhCcCccccccccccchHHHHHhcCcccCccccccCc
Confidence                   346788999999999999999999999999999888755  33345778999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHh
Q 026282          180 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQL  219 (241)
Q Consensus       180 ~~r~~la~~~n~~il~~~g~~~~s~Le~llk~~~~~q~~L  219 (241)
                      .+|+-+++.+|.+++...+.++.+.|+.++.+.-.+...+
T Consensus       411 ~~~e~v~~~~n~~il~t~~~~~~~~l~~~l~~~~~~~~~~  450 (469)
T KOG1477|consen  411 IQREPVAEALNSAILETDNNSKDPDLERVLSQTPAELSLY  450 (469)
T ss_pred             ccchhHHhhhcccccccCCCCccchhhhhhccchhhHhhh
Confidence            9999999999999999999999999999999987666554

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.31  E-value=0.011  Score=52.36  Aligned_cols=189  Identities=11%  Similarity=0.024  Sum_probs=131.6

Q ss_pred             hhcccCCChHHHHHHhccCCCCHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCC--cCcHHhHHHHHHHHHHHhcCCHHHH
Q 026282           18 AMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE--HIDLATITDRMAVKKAVQCGNVEDA   95 (241)
Q Consensus        18 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~LI~~yL~~~Gy~~ta~~l~~es~~~--~~d~~~~~~r~~I~~~I~~G~~~~A   95 (241)
                      ..++.+++...- +.+...+.+...++.+...+..+.|-..-+..|+.+.|..  ....+.|...+.|.+.|.+.+...-
T Consensus        79 ~~~~~nFd~~~~-n~~~~f~~~~v~~~~~~~l~~~n~~dv~~~hi~~~~~g~~e~~~~~~~f~~lK~v~~gI~~k~~~l~  157 (396)
T COG5109          79 DCRPANFDVQVG-NQIYPFSTQTVTYLVVYYLLENNCADVVERHISETKDGKDEIIKIRDGFVKLKKVISGISEKSTFLL  157 (396)
T ss_pred             hhccccCCHHHH-hhcCCCccceeeehHHHHHHHhhHHHHHHHHHHHhhcCccchhhHHHHHHHHHHHHHhhccchhHhH
Confidence            344555665443 3344555566667777777788888888899999999988  4456889999999999999999999


Q ss_pred             HHHHHhhChhhhhcCCcchhhhHHH--HHHHHHhcCCHHHHHHHHHHhccccccCCHHHHHHHHHHhhhhhccCC-----
Q 026282           96 IEKVNDLNPEILDTNPQLFFHLQQQ--RLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDV-----  168 (241)
Q Consensus        96 i~~i~~~~p~l~~~~~~l~F~L~~q--~fIEli~~~~~~~Al~~~r~~l~p~~~~~~~~~~~l~~~~~LL~y~~~-----  168 (241)
                      ++|. +....+.+.++..++.+...  .++-++-+ ++++|+.++++.++.+...|   ...++.++-.+.+...     
T Consensus       158 iE~~-Qi~gyl~kgdtesel~l~~~~~esl~l~hk-~~~~a~r~c~t~~a~f~~kh---~~dv~~~~~~l~nap~dcfrh  232 (396)
T COG5109         158 IEFL-QIEGYLSKGDTESELELYLVSHESLLLIHK-RYDEALRLCFTKLASFVPKH---IQDVKPLLRFLVNAPTDCFRH  232 (396)
T ss_pred             HHHH-HhcCccccCCchhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh---ccchHHHHHHHHcCchHHhhh
Confidence            9999 44455556565555555554  44444444 89999999999887775433   3445554444443110     


Q ss_pred             -C----------------CCc--cccccChhhHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHH
Q 026282          169 -S----------------NCP--VGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLL  213 (241)
Q Consensus       169 -~----------------~sp--~~~l~~~~~r~~la~~~n~~il~~~g~~~~s~Le~llk~~~  213 (241)
                       +                +-|  +-+-+ ...|..+...|.+.+++..|++-.|+|.-++....
T Consensus       233 rekelmqnI~~~l~ksligqPiEdIDkv-nk~~k~l~~lF~~eycaa~gm~~~spL~~~v~tG~  295 (396)
T COG5109         233 REKELMQNIQEALKKSLIGQPIEDIDKV-NKSRKKLIELFKSEYCAANGMPNRSPLRELVETGT  295 (396)
T ss_pred             cchhHHHHHHHHHHHhhcCCcHHHHHHh-hhhHHHHHHHHHHHHHHhcCCCccChHHHHHHhhh
Confidence             0                011  11111 24589999999999999999999999988887664

>KOG1333 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.23  E-value=0.21  Score=41.84  Aligned_cols=136  Identities=14%  Similarity=0.162  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHhCCC-cCcHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhc----C----C
Q 026282           41 EDMNKLVMNFLVTEGYVDAAEKFRMESGTE-HIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDT----N----P  111 (241)
Q Consensus        41 ~~l~~LI~~yL~~~Gy~~ta~~l~~es~~~-~~d~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~----~----~  111 (241)
                      +.++.+|-+||.-.|+.-|.++|-.|.... ....-.=....++.++|...|++.--+.=.....+++..    .    .
T Consensus         6 ~~tDelvReYL~frgf~~tLkalD~E~~~~Ke~~frvdrivdq~~~a~q~~Dl~aLr~~W~~l~~r~Fs~Le~~y~~~~~   85 (241)
T KOG1333|consen    6 ERTDELVREYLLFRGFTHTLKALDAEIKADKEKGFRVDRIVDQLQQAMQVYDLAALRDYWSYLERRLFSRLEDIYRPTIH   85 (241)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhHHHhhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            567899999999999999999998887655 111111123566778888888887655444333333322    1    2


Q ss_pred             cchhhhHHHHHHHHHhcCCHHHHHHHHHHhccccccCCHHHHHHHHHHhhhhhcc---CCC-CCccccccChhhHHH
Q 026282          112 QLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFE---DVS-NCPVGDLLDISQRLK  184 (241)
Q Consensus       112 ~l~F~L~~q~fIEli~~~~~~~Al~~~r~~l~p~~~~~~~~~~~l~~~~~LL~y~---~~~-~sp~~~l~~~~~r~~  184 (241)
                      .++-.+.+...+..+.++..++|=+|.++.-+...+ .    .+-++   .++||   ..+ ..|+..+|+...-+-
T Consensus        86 kle~Sl~r~yLV~~~q~nr~~K~~EFF~K~a~~lqn-q----~eWkD---WF~fPf~~~a~~tppf~~~F~ktw~e~  154 (241)
T KOG1333|consen   86 KLETSLFRFYLVYTIQTNRNDKAQEFFAKQATELQN-Q----AEWKD---WFVLPFLPSAKDTPPFRKYFDKTWIEI  154 (241)
T ss_pred             HHHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhc-c----hhhhh---heecccCCCCCCCccHHHHHHhhhhHh
Confidence            356667777788888899999999999876444432 2    33444   33444   223 346777777553333

>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes

Probab=91.86  E-value=0.3  Score=35.01  Aligned_cols=29  Identities=24%  Similarity=0.304  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHhCHHHHHHHHHHHhCCC
Q 026282           42 DMNKLVMNFLVTEGYVDAAEKFRMESGTE   70 (241)
Q Consensus        42 ~l~~LI~~yL~~~Gy~~ta~~l~~es~~~   70 (241)
                      .++.||.+||..+||.-|+..|..|+|.+
T Consensus        20 Li~eLIrEyLef~~l~~TlsVf~~Es~~~   48 (81)
T PF09398_consen   20 LINELIREYLEFNNLDYTLSVFQPESGQP   48 (81)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHcCCccHHHHHhhccCCC
Confidence            57899999999999999999999999988

This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	241
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 1e-08
 Identities = 49/293 (16%), Positives = 94/293 (32%), Gaps = 96/293 (32%)

Query: 4   FWIVIRQLAEIEA-MAMSKKVITR-----EEWEKKLNDVKIRKEDMNKLVMNFLVTEGYV 57
           FW+ ++     E  + M +K++ +            +++K+R   +   +   L ++ Y 
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 58  DA------------AEKFRMESGTEHIDLAT-----ITDRMAVKKA-------VQCGNVE 93
           +                F +        L T     +TD ++                  
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKI----LLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 94  DAIE---------KVNDLNPEILDTNPQLFFHLQQQRLI-ELIRNG-------------K 130
           D ++         +  DL  E+L TNP     L    +I E IR+G             K
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNP---RRLS---IIAESIRDGLATWDNWKHVNCDK 354

Query: 131 VEEALEFAQEELAPRGEENQSFLEEL----------ERTVALLAFEDVSNCPVGDLLDIS 180
           +   +E +   L P   E +   + L             ++L+ F+ + +      + + 
Sbjct: 355 LTTIIESSLNVLEP--AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV----MVVV 408

Query: 181 QRLKTASEVNAAILTSQSHEKDPK-----LPSLLKMLLWAQNQLDEKAAYPRI 228
            +L   S V          EK PK     +PS+   L       +E A +  I
Sbjct: 409 NKLHKYSLV----------EKQPKESTISIPSIY--LELKVKLENEYALHRSI 449

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 40/349 (11%), Positives = 82/349 (23%), Gaps = 142/349 (40%)

Query: 3   LFWIVIRQLAEIEAMAMSKKVITREEW-----------------------EKKLNDVKI- 38
           LFW ++ +  E+    + + +    ++                       ++  ND ++ 
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 39  ------RKEDMNKL--------VMNFLVTEG------YVDAAEKFRMESGTEHIDLATIT 78
                 R +   KL            ++ +G         A +               + 
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK---------VQ 177

Query: 79  DRMAVK----KAVQCGNVEDAIEKVNDL----------NPEILDTNPQ-----------L 113
            +M  K        C + E  +E +  L            +                  L
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 114 FFHLQQQR-LIEL--IRNGKVEEALEF------------------AQEELAPRGEENQSF 152
                 +  L+ L  ++N K   A                     A        + +   
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 153 LEELERTVALLAFEDVSNCPVGDL---------LDIS---------------------QR 182
           L   E   +LL      +C   DL           +S                      +
Sbjct: 298 LTPDE-VKSLLL--KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 183 LKTASEVNAAILTSQSH----------EKDPKLPSLLKMLLWAQNQLDE 221
           L T  E +  +L    +               +P++L  L+W      +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	241
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	95.49
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	95.35
2d68_A	82	FOP, FGFR1OP; alpha helical bundle, dimer, cell cy	89.1
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	88.65
2nxp_A	156	Transcription initiation factor TFIID subunit 5; t	84.13

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=95.49  E-value=0.015  Score=41.48  Aligned_cols=34  Identities=29%  Similarity=0.491  Sum_probs=31.9

Q ss_pred             CCCHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCC
Q 026282           37 KIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE   70 (241)
Q Consensus        37 ~~~~~~l~~LI~~yL~~~Gy~~ta~~l~~es~~~   70 (241)
                      .++.+++|.||..||...||..||-+|.+|+++.
T Consensus         2 sitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~   35 (90)
T 2xtc_A            2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS   35 (90)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence            4678999999999999999999999999999877

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=95.35  E-value=0.019  Score=40.77  Aligned_cols=54  Identities=15%  Similarity=0.263  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCcCcHHhHHHHHHHHHHHhcCCHHHHHHH
Q 026282           40 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEHIDLATITDRMAVKKAVQCGNVEDAIEK   98 (241)
Q Consensus        40 ~~~l~~LI~~yL~~~Gy~~ta~~l~~es~~~~~d~~~~~~r~~I~~~I~~G~~~~Ai~~   98 (241)
                      +++|++-|++||..+||.+++.+|.+|++++..+..     ..-...+++.+|..++.+
T Consensus        10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~-----~~ky~gLLEKKWTSViRL   63 (88)
T 1uuj_A           10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEEL-----DKKYAGLLEKKWTSVIRL   63 (88)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHH-----HHHHTTHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchh-----hhhhhhhhhhhHHHHHHH
Confidence            468999999999999999999999999988722221     112444666666665543

>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}

Probab=89.10  E-value=0.78  Score=31.94  Aligned_cols=34  Identities=21%  Similarity=0.043  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHhCCC--cCcH
Q 026282           41 EDMNKLVMNFLVTEGYVDAAEKFRMESGTE--HIDL   74 (241)
Q Consensus        41 ~~l~~LI~~yL~~~Gy~~ta~~l~~es~~~--~~d~   74 (241)
                      ..++.||.+||...||.=|...|..|+|.+  +.+.
T Consensus        19 rLi~~LVrEyLef~~l~~TlsVf~pEs~l~~~~~~R   54 (82)
T 2d68_A           19 RLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGR   54 (82)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTCC---CCH
T ss_pred             HHHHHHHHHHHHHcCCcchHHhhhhccCCCCCCCCH
Confidence            458899999999999999999999999997  4444

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=88.65  E-value=0.083  Score=46.62  Aligned_cols=53  Identities=15%  Similarity=0.296  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHhCCC-cCcHHhHHHHHHHHHHHhcCCHHHHHHH
Q 026282           40 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTE-HIDLATITDRMAVKKAVQCGNVEDAIEK   98 (241)
Q Consensus        40 ~~~l~~LI~~yL~~~Gy~~ta~~l~~es~~~-~~d~~~~~~r~~I~~~I~~G~~~~Ai~~   98 (241)
                      +++++++|++||..+||.+++.+|.+|.+++ ...      .......+.++.|+..+..
T Consensus         8 ~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~~------~~~~~~~~~~~~w~~~~~l   61 (410)
T 1vyh_C            8 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEE------LDKKYAGLLEKKWTSVIRL   61 (410)
T ss_dssp             ------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCcc------hhhhhhchhhhhhhheeeH
Confidence            5789999999999999999999999999876 111      1234455677888777664

>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1

Probab=84.13  E-value=1.3  Score=34.51  Aligned_cols=65  Identities=18%  Similarity=0.127  Sum_probs=45.2

Q ss_pred             HHHHHHhhChhhhh-cCCcchhhhHHHHHHHHHhcCCHHHHHHHHHHhccccccCCHHHHHHHHHHhhhh
Q 026282           95 AIEKVNDLNPEILD-TNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALL  163 (241)
Q Consensus        95 Ai~~i~~~~p~l~~-~~~~l~F~L~~q~fIEli~~~~~~~Al~~~r~~l~p~~~~~~~~~~~l~~~~~LL  163 (241)
                      -..|++..- ...+ .=..+.|=+.++-|++|+..|...+|-.|..++-.-+...+   ...++++.++.
T Consensus        34 L~~wv~~sl-d~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~---~~~i~~L~~i~   99 (156)
T 2nxp_A           34 LKHFIECSL-DCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYY---QDDLRVLSSLT   99 (156)
T ss_dssp             HHHHHHTSC-HHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGG---HHHHHHHHTCC
T ss_pred             HHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHH---HHHHHHHhcCC
Confidence            356776642 2222 12568999999999999999999999999997765554333   55666655543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	241
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	95.67
d2nxpa1	149	TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId	85.24

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.67  E-value=0.0061  Score=40.41  Aligned_cols=31  Identities=23%  Similarity=0.622  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHhCCC
Q 026282           40 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTE   70 (241)
Q Consensus        40 ~~~l~~LI~~yL~~~Gy~~ta~~l~~es~~~   70 (241)
                      +.+|++-|++||..+||.+++.+|.+|++++
T Consensus         7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~   37 (76)
T d1uuja_           7 RDELNRAIADYLRSNGYEEAYSVFKKEAELD   37 (76)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCC
Confidence            5789999999999999999999999999886

>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.24  E-value=0.51  Score=34.72  Aligned_cols=50  Identities=24%  Similarity=0.259  Sum_probs=39.0

Q ss_pred             CcchhhhHHHHHHHHHhcCCHHHHHHHHHHhccccccCCHHHHHHHHHHhhhh
Q 026282          111 PQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALL  163 (241)
Q Consensus       111 ~~l~F~L~~q~fIEli~~~~~~~Al~~~r~~l~p~~~~~~~~~~~l~~~~~LL  163 (241)
                      ..+.|=+..+-|++||.+|+..+|..|..++-.-+...+   ...++++.++.
T Consensus        43 ~~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~---~~~I~~L~~i~   92 (149)
T d2nxpa1          43 SQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYY---QDDLRVLSSLT   92 (149)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGG---HHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHH---HHHHHHHHcCC
Confidence            568999999999999999999999999997755444333   55677665543