Citrus Sinensis ID: 026349

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MSLFWIVIRQLAEIEAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
MSLFWIVIRQLAEIEAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRmesgtepdidlaTITDRMAVKKAVQCGNVEDAIEKVndlnpeildtnpqLFFHLQQQRLIELIRNGKVEEALEFAQEelaprgeenQSFLEELERTVALLAFedvsncpvgdlLDISQRLKTASEVNAAILtsqshekdpklPSLLKMLLWAQNQldekaayprindlatatledpai
Flexible Loop (DISEMBL)
MSLFWIVIRQLAEIEamskkvitreewekklndvkirkedmnKLVMNFLVTEGYVDAAEKFrmesgtepdidlaTITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAIltsqshekdpkLPSLLKMLLWAQNQLDEKAAYPRINDlatatledpai
Low Complexity Region (SEG)
MSLFWIVIRQLAEIEAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVeealefaqeelaPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI
Disordered region (IsUnstruct)
**LFWIVIRQLAEIEAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEF**************FLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAI**************LLKMLLWAQNQLDEKAAYPRI*************
Disordered Region (DISOPRED)
*SLFWIVIRQLAE********************VKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILT********K*PSLLKMLLWAQNQLDEKAAYPRINDLATA*L*DP**
Disordered Region (DISEMBL)
MSLFWIVIRQLAEIEAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI
Disordered Region (DISPRO)
MSLFWIVIRQLAEIEAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATL*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLFWIVIRQLAEIEAMSKKVITxxxxxxxxxxxxxxxxxxxxxVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
Q54X16	228	Glucose-induced degradati	yes	no	0.908	0.956	0.637	2e-79
A7SWD3	225	Glucose-induced degradati	N/A	no	0.9	0.96	0.506	9e-62
Q6PC55	228	Glucose-induced degradati	yes	no	0.904	0.951	0.555	3e-60
Q5ZKQ7	228	Glucose-induced degradati	yes	no	0.904	0.951	0.541	3e-60
Q32L52	228	Glucose-induced degradati	yes	no	0.904	0.951	0.532	1e-59
Q9D7M1	228	Glucose-induced degradati	yes	no	0.904	0.951	0.532	4e-59
Q9NWU2	228	Glucose-induced degradati	yes	no	0.904	0.951	0.532	6e-59
Q10446	240	Uncharacterized protein C	yes	no	0.804	0.804	0.354	1e-20
Q96S59	729	Ran-binding protein 9 OS=	no	no	0.379	0.124	0.347	3e-08
Q9PTY5	548	Ran-binding protein 9 OS=	N/A	no	0.512	0.224	0.281	4e-08

>sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog OS=Dictyostelium discoideum GN=DDB_G0279265 PE=3 SV=2

 Score =  295 bits (755), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 139/218 (63%), Positives = 171/218 (78%)

Query: 19  KKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITD 78
           KKVI+  EW+ KL +V I K D+NKLVMN+LV EGY +AA KF+ ES T+  +DLA+I D
Sbjct: 11  KKVISTSEWDDKLAEVNISKSDLNKLVMNYLVIEGYQEAAAKFQEESSTQTTVDLASIAD 70

Query: 79  RMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQ 138
           RMA++ A+QCG+VE  IE VNDLNPEILDTNPQL+FHLQQQ+LIELIR G   EAL+FAQ
Sbjct: 71  RMAIRSAIQCGDVEKGIEIVNDLNPEILDTNPQLYFHLQQQKLIELIRKGMTAEALKFAQ 130

Query: 139 EELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSH 198
           +ELAP+GEEN  FLEELE+T++LL FED +  P+  LLD SQR KTA E+N+AIL SQS 
Sbjct: 131 DELAPQGEENNKFLEELEKTISLLVFEDTAKSPLSSLLDHSQRQKTAGELNSAILLSQSQ 190

Query: 199 EKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLE 236
           +KDPKLP++LK+L WAQ QLD K  YP+I +  T   E
Sbjct: 191 DKDPKLPTILKLLKWAQTQLDSKCIYPKITNTVTGEYE 228

Dictyostelium discoideum (taxid: 44689)

>sp|A7SWD3|GID8_NEMVE Glucose-induced degradation protein 8 homolog OS=Nematostella vectensis GN=v1g247787 PE=3 SV=1

 Score =  236 bits (603), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 110/217 (50%), Positives = 167/217 (76%), Gaps = 1/217 (0%)

Query: 22  ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 81
           + REEW +K+  ++ ++ +MN+L+M++LVTEGY +AAEKFR+ESGT+P   L ++ DR+ 
Sbjct: 7   VNREEWMEKIGKLRFQRAEMNRLIMDYLVTEGYKEAAEKFRIESGTQPTAPLDSLDDRIK 66

Query: 82  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 141
           +++AVQ G++E A+   N LNP+ILD+N QL+FHLQQQRLIELIR   +E A+EFAQ + 
Sbjct: 67  IREAVQKGDLEQAVSMTNKLNPDILDSNQQLYFHLQQQRLIELIREKDIEAAVEFAQGQF 126

Query: 142 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 201
           + +G+E+  +LEELE+T+ALLAF++    P GDLL  SQR K ASE+NAAIL ++  +  
Sbjct: 127 SEQGQESGRYLEELEQTMALLAFDNPEESPFGDLLHTSQRQKVASELNAAILEAEHKKTQ 186

Query: 202 PKLPSLLKMLLWAQNQLD-EKAAYPRINDLATATLED 237
           PKL ++LK+LLWAQ++L+ +K  +P++ ++A+ T E+
Sbjct: 187 PKLANVLKLLLWAQDELEGKKVKFPKMAEIASGTFEE 223

Nematostella vectensis (taxid: 45351)

>sp|Q6PC55|GID8_DANRE Glucose-induced degradation protein 8 homolog OS=Danio rerio GN=gid8 PE=2 SV=1

 Score =  231 bits (590), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 121/218 (55%), Positives = 166/218 (76%), Gaps = 1/218 (0%)

Query: 22  ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 81
           IT+EEW  KLN+V I++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP++DL ++ +R+ 
Sbjct: 10  ITKEEWMDKLNNVHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPNVDLDSLDERIK 69

Query: 82  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 141
           +++ V  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ +L
Sbjct: 70  IREMVLKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRLRETEAALEFAQSQL 129

Query: 142 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 201
           A +GEE++  L E+ERT+ALLAF++    P GDLL++ QR K  SEVN A+L  ++ E  
Sbjct: 130 AEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENREST 189

Query: 202 PKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP 238
           PKL  LLK+LLWAQN+LD+ K  Y R+ DL+  T+EDP
Sbjct: 190 PKLAKLLKLLLWAQNELDQKKVKYSRMTDLSKGTIEDP 227

Danio rerio (taxid: 7955)

>sp|Q5ZKQ7|GID8_CHICK Glucose-induced degradation protein 8 homolog OS=Gallus gallus GN=GID8 PE=2 SV=1

 Score =  231 bits (590), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 118/218 (54%), Positives = 167/218 (76%), Gaps = 1/218 (0%)

Query: 22  ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 81
           IT++EW +KLN++ I++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct: 10  ITKDEWMEKLNNLHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query: 82  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 141
           +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ +L
Sbjct: 70  IREMILKGQIQEAISLINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query: 142 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 201
           A +GEE++  L E+ERT+ALLAF++    P GDLL++ QR K  SEVN A+L  ++ E  
Sbjct: 130 AEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENREST 189

Query: 202 PKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP 238
           PKL  LLK+LLWAQN+LD+ K  YP++ DL+  T+E+P
Sbjct: 190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGTIEEP 227

Gallus gallus (taxid: 9031)

>sp|Q32L52|GID8_BOVIN Glucose-induced degradation protein 8 homolog OS=Bos taurus GN=GID8 PE=2 SV=1

 Score =  229 bits (584), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 116/218 (53%), Positives = 167/218 (76%), Gaps = 1/218 (0%)

Query: 22  ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 81
           IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct: 10  ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query: 82  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 141
           +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ +L
Sbjct: 70  IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query: 142 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 201
           A +GEE++  L E+ERT+ALLAF++  + P GDLL++ QR K  SEVN A+L  ++ E  
Sbjct: 130 AEQGEESRECLTEMERTLALLAFDNPEDSPFGDLLNMMQRQKVWSEVNQAVLDYENREST 189

Query: 202 PKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP 238
           PKL  LLK+LLWAQN+LD+ K  YP++ DL+   +E+P
Sbjct: 190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEP 227

Bos taurus (taxid: 9913)

>sp|Q9D7M1|GID8_MOUSE Glucose-induced degradation protein 8 homolog OS=Mus musculus GN=Gid8 PE=2 SV=1

 Score =  228 bits (580), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 116/218 (53%), Positives = 164/218 (75%), Gaps = 1/218 (0%)

Query: 22  ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 81
           IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct: 10  ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query: 82  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 141
           +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ +L
Sbjct: 70  IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query: 142 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 201
           A +GEE++  L E+ERT+ALLAF+     P GDLL + QR K  SEVN A+L  ++ E  
Sbjct: 130 AEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHMMQRQKVWSEVNQAVLDYENREST 189

Query: 202 PKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP 238
           PKL  LLK+LLWAQN+LD+ K  YP++ DL+   +E+P
Sbjct: 190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEP 227

Mus musculus (taxid: 10090)

>sp|Q9NWU2|GID8_HUMAN Glucose-induced degradation protein 8 homolog OS=Homo sapiens GN=GID8 PE=1 SV=1

 Score =  227 bits (578), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 116/218 (53%), Positives = 163/218 (74%), Gaps = 1/218 (0%)

Query: 22  ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 81
           IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct: 10  ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query: 82  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 141
           +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ +L
Sbjct: 70  IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query: 142 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 201
           A +GEE++  L E+ERT+ALLAF+     P GDLL   QR K  SEVN A+L  ++ E  
Sbjct: 130 AEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHTMQRQKVWSEVNQAVLDYENREST 189

Query: 202 PKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP 238
           PKL  LLK+LLWAQN+LD+ K  YP++ DL+   +E+P
Sbjct: 190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEP 227

Homo sapiens (taxid: 9606)

>sp|Q10446|YDED_SCHPO Uncharacterized protein C12B10.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC12B10.13 PE=4 SV=1

 Score =  100 bits (249), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 112/203 (55%), Gaps = 10/203 (4%)

Query: 25  EEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKK 84
           E+WEK+   V I   D+N L++++LV +G  +AA+ F  E+          + +R+ + +
Sbjct: 20  EQWEKQTKSVHIDNSDVNSLILDYLVIQGDEEAAKTFAEEAQITDYYIPPYVKERLEICE 79

Query: 85  AVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIEL---------IRNGKVEEALE 135
            ++ G++  AI K+N+L PEILDTN +L F L + RL+EL           +  VE  L 
Sbjct: 80  LIKSGSINSAICKLNELEPEILDTNSELLFELLRLRLLELIREVVEEKDTSDLAVERCLN 139

Query: 136 FAQEELAPRGEENQSFLEELERTVALLAFEDVSNCP-VGDLLDISQRLKTASEVNAAILT 194
           FA E LAP    NQ FL  LE T++LL F   S  P + ++L+ SQR + A+  N +IL 
Sbjct: 140 FAHENLAPLAPSNQKFLNSLELTMSLLCFPPSSYSPALKNVLNYSQRERVANLANVSILK 199

Query: 195 SQSHEKDPKLPSLLKMLLWAQNQ 217
           SQ    + +L SL+    W + +
Sbjct: 200 SQGLSNESRLLSLVNFERWCEKE 222

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q96S59|RANB9_HUMAN Ran-binding protein 9 OS=Homo sapiens GN=RANBP9 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 41  MNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVND 100
           + K+V ++LV  GY   AE F   +      +LA+I +R  ++K V  G + +AIE    
Sbjct: 369 IQKMVSSYLVHHGYCATAEAFARSTDQTVLEELASIKNRQRIQKLVLAGRMGEAIETTQQ 428

Query: 101 LNPEILDTNPQLFFHLQQQRLIELIRNGKVEE 132
           L P +L+ NP L F L+ ++ IE++ NG   E
Sbjct: 429 LYPSLLERNPNLLFTLKVRQFIEMV-NGTDSE 459

May act as an adapter protein to couple membrane receptors to intracellular signaling pathways. May be involved in signaling of ITGB2/LFA-1 and other integrins. Enhances HGF-MET signaling by recruiting Sos and activating the Ras pathway. Enhances dihydrotestosterone-induced transactivation activity of AR, as well as dexamethasone-induced transactivation activity of NR3C1, but not affect estrogen-induced transactivation. Stabilizes TP73 isoform Alpha, probably by inhibiting its ubiquitination, and increases its proapoptotic activity. Inhibits the kinase activity of DYRK1A and DYRK1B. Inhibits FMR1 binding to RNA.

Homo sapiens (taxid: 9606)

>sp|Q9PTY5|RANB9_XENLA Ran-binding protein 9 OS=Xenopus laevis GN=ranbp9 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 12/135 (8%)

Query: 12  AEIEAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDI 71
           ++I+A  ++     EW+  +           ++V ++LV  GY   AE F   +      
Sbjct: 202 SKIQAQIERFPVAGEWQSMIQ----------RMVSSYLVHHGYCSTAEAFAKSTDQTVQE 251

Query: 72  DLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVE 131
           +LA+I +R  ++K V  G + +AIE    L P +L+ NP L F L+ ++ IE++ NG   
Sbjct: 252 ELASIKNRQRIQKLVLSGRMGEAIETTQQLYPSLLERNPNLLFTLKVRQFIEMV-NGTDS 310

Query: 132 EALEFAQEEL-APRG 145
           E        L +P G
Sbjct: 311 EVRCLGNRSLKSPDG 325

May act as an adapter protein to couple membrane receptors to intracellular signaling pathways.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
255560784	287	Protein C20orf11, putative [Ricinus comm	1.0	0.836	0.958	1e-129
224113997	242	predicted protein [Populus trichocarpa]	1.0	0.991	0.958	1e-129
356555082	242	PREDICTED: UPF0559 protein-like [Glycine	1.0	0.991	0.946	1e-128
449457706	242	PREDICTED: glucose-induced degradation p	1.0	0.991	0.946	1e-127
356549385	242	PREDICTED: UPF0559 protein-like [Glycine	1.0	0.991	0.942	1e-127
357446437	241	hypothetical protein MTR_2g012810 [Medic	0.987	0.983	0.945	1e-126
388507964	241	unknown [Medicago truncatula]	0.987	0.983	0.941	1e-125
359494870	293	PREDICTED: UPF0559 protein-like [Vitis v	1.0	0.819	0.771	1e-120
224078908	226	predicted protein [Populus trichocarpa]	0.937	0.995	0.942	1e-120
296080906	294	unnamed protein product [Vitis vinifera]	1.0	0.816	0.768	1e-120

>gi|255560784|ref|XP_002521405.1| Protein C20orf11, putative [Ricinus communis] gi|223539304|gb|EEF40895.1| Protein C20orf11, putative [Ricinus communis]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 232/242 (95%), Positives = 237/242 (97%), Gaps = 2/242 (0%)

Query: 1   MSLFWIVIRQLAEIEAM--SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 58
           MSLFWIVIRQLAEIEAM  SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA
Sbjct: 46  MSLFWIVIRQLAEIEAMATSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 105

Query: 59  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 118
           EKFR ESGTEPDIDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 106 EKFRKESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 165

Query: 119 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 178
           QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDV+NCPVG+LLDI
Sbjct: 166 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVTNCPVGELLDI 225

Query: 179 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDP 238
           SQRLKTASEVNAAILTSQSHEKDPKLPSLLKML+WAQNQLDEKAAYPRINDL+TA LEDP
Sbjct: 226 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLIWAQNQLDEKAAYPRINDLSTAMLEDP 285

Query: 239 AI 240
           A+
Sbjct: 286 AV 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113997|ref|XP_002316637.1| predicted protein [Populus trichocarpa] gi|222859702|gb|EEE97249.1| predicted protein [Populus trichocarpa]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 232/242 (95%), Positives = 235/242 (97%), Gaps = 2/242 (0%)

Query: 1   MSLFWIVIRQLAEIEAM--SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 58
           MSLFWIVIRQLAEIEAM  SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA
Sbjct: 1   MSLFWIVIRQLAEIEAMATSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60

Query: 59  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 118
           EKF+MESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFQMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 119 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 178
           QR IELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG LLDI
Sbjct: 121 QRFIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGGLLDI 180

Query: 179 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDP 238
           SQRLKTASEVNAAILTSQS EKDPKLPSLLKMLLWAQNQLDEKA YPRINDL+TA LEDP
Sbjct: 181 SQRLKTASEVNAAILTSQSREKDPKLPSLLKMLLWAQNQLDEKAVYPRINDLSTAMLEDP 240

Query: 239 AI 240
           A+
Sbjct: 241 AV 242

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555082|ref|XP_003545868.1| PREDICTED: UPF0559 protein-like [Glycine max]

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/242 (94%), Positives = 237/242 (97%), Gaps = 2/242 (0%)

Query: 1   MSLFWIVIRQLAEIEAM--SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 58
           MSL W+VIRQLAEIEAM  SKK+ITREEWEKKL+DVKIRKEDMNKLVMNFLVTEGYV+AA
Sbjct: 1   MSLLWLVIRQLAEIEAMAASKKLITREEWEKKLSDVKIRKEDMNKLVMNFLVTEGYVEAA 60

Query: 59  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 118
           EKFRMESGTEPDIDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 119 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 178
           QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG+LLDI
Sbjct: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDI 180

Query: 179 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDP 238
           SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLL AQNQLDEKAAYPR+NDL+TATLEDP
Sbjct: 181 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLCAQNQLDEKAAYPRVNDLSTATLEDP 240

Query: 239 AI 240
           A+
Sbjct: 241 AV 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457706|ref|XP_004146589.1| PREDICTED: glucose-induced degradation protein 8 homolog [Cucumis sativus] gi|449488429|ref|XP_004158034.1| PREDICTED: glucose-induced degradation protein 8 homolog [Cucumis sativus]

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/242 (94%), Positives = 234/242 (96%), Gaps = 2/242 (0%)

Query: 1   MSLFWIVIRQLAEIEAM--SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 58
           MSLFWIVIRQ AE EAM  SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA
Sbjct: 1   MSLFWIVIRQFAENEAMATSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60

Query: 59  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 118
           EKFRMESG EP+IDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFRMESGAEPEIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 119 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 178
           QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPV DLLDI
Sbjct: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVRDLLDI 180

Query: 179 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDP 238
           SQRLKTASEVNAAILTSQSHEKDPKLPSLLKML+WAQ+QLDEKAAYPRINDL+TA LEDP
Sbjct: 181 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLMWAQDQLDEKAAYPRINDLSTAMLEDP 240

Query: 239 AI 240
            +
Sbjct: 241 PV 242

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549385|ref|XP_003543074.1| PREDICTED: UPF0559 protein-like [Glycine max]

 Score =  458 bits (1179), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/242 (94%), Positives = 236/242 (97%), Gaps = 2/242 (0%)

Query: 1   MSLFWIVIRQLAEIEAM--SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 58
           MSLF + IRQLAEIEAM  SKK+ITREEWEKKL+DVKIRKEDMNKLVMNFLVTEGYV+AA
Sbjct: 1   MSLFLLEIRQLAEIEAMAASKKLITREEWEKKLSDVKIRKEDMNKLVMNFLVTEGYVEAA 60

Query: 59  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 118
           EKFRMESGTEPDIDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 119 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 178
           QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG+LLDI
Sbjct: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDI 180

Query: 179 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDP 238
           SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLL AQNQLDEKAAYPR+NDL+TATLEDP
Sbjct: 181 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLCAQNQLDEKAAYPRVNDLSTATLEDP 240

Query: 239 AI 240
           A+
Sbjct: 241 AV 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446437|ref|XP_003593496.1| hypothetical protein MTR_2g012810 [Medicago truncatula] gi|355482544|gb|AES63747.1| hypothetical protein MTR_2g012810 [Medicago truncatula]

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/239 (94%), Positives = 234/239 (97%), Gaps = 2/239 (0%)

Query: 1   MSLFWIVIRQLAEIEAM--SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 58
           MSLFWIVIRQLA+IEAM  SKKVITREEWEKKLN+VKIRKEDMNKLVMNFLVTEG+VDAA
Sbjct: 1   MSLFWIVIRQLAQIEAMAASKKVITREEWEKKLNNVKIRKEDMNKLVMNFLVTEGFVDAA 60

Query: 59  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 118
           EKFR ESGTEPDIDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFRKESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 119 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 178
           QRLIELIRNGK+EEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG+LLDI
Sbjct: 121 QRLIELIRNGKIEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDI 180

Query: 179 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLED 237
           SQRLKTASEVNAAILTSQSHEKDPKLPSLLKML+WAQNQLDEKAA+PRINDL+TA LED
Sbjct: 181 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLIWAQNQLDEKAAFPRINDLSTAALED 239

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507964|gb|AFK42048.1| unknown [Medicago truncatula]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/239 (94%), Positives = 233/239 (97%), Gaps = 2/239 (0%)

Query: 1   MSLFWIVIRQLAEIEAM--SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 58
           MSLFWIVIRQLA+IEAM  SKKVITREEWEKKLN+VKIRKEDMNKLVMNFLVTEG+VDAA
Sbjct: 1   MSLFWIVIRQLAQIEAMAASKKVITREEWEKKLNNVKIRKEDMNKLVMNFLVTEGFVDAA 60

Query: 59  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 118
           EKFR ESGTEPDIDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFRKESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 119 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 178
           QRLIELIRNGK+EEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG+LLDI
Sbjct: 121 QRLIELIRNGKIEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDI 180

Query: 179 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLED 237
           SQRLKTASEVNAAILTSQ HEKDPKLPSLLKML+WAQNQLDEKAA+PRINDL+TA LED
Sbjct: 181 SQRLKTASEVNAAILTSQRHEKDPKLPSLLKMLIWAQNQLDEKAAFPRINDLSTAALED 239

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494870|ref|XP_002264581.2| PREDICTED: UPF0559 protein-like [Vitis vinifera]

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/293 (77%), Positives = 236/293 (80%), Gaps = 53/293 (18%)

Query: 1   MSLFWIVIRQLAEIEAM--SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 58
           MSLF IVIR+L EIE+M  SKKVITREEWE+KLNDVKIRKEDMNKLVMNFLVTEGYVDAA
Sbjct: 1   MSLFCIVIRELEEIESMASSKKVITREEWERKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60

Query: 59  EKFRMESGTE-------------------------------------------------- 68
           EKFRMESGTE                                                  
Sbjct: 61  EKFRMESGTEHIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEGYVDAAEKFRMESGT 120

Query: 69  -PDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRN 127
            PDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRN
Sbjct: 121 EPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRN 180

Query: 128 GKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASE 187
           GKV+EALEFAQEELAPRGEENQSFLEELE+TVALLAFED SNCPVG+LLDISQRLKTASE
Sbjct: 181 GKVDEALEFAQEELAPRGEENQSFLEELEKTVALLAFEDFSNCPVGELLDISQRLKTASE 240

Query: 188 VNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI 240
           VNAAILTSQSHEKDPKLPSLLKML+WAQNQLD+KAAYPRINDL+TA LEDPA+
Sbjct: 241 VNAAILTSQSHEKDPKLPSLLKMLIWAQNQLDDKAAYPRINDLSTARLEDPAV 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078908|ref|XP_002305675.1| predicted protein [Populus trichocarpa] gi|222848639|gb|EEE86186.1| predicted protein [Populus trichocarpa]

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/225 (94%), Positives = 219/225 (97%)

Query: 16  AMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLAT 75
           AMSKKVITREEWE+KLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKF+MESG EPDIDLAT
Sbjct: 2   AMSKKVITREEWERKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFQMESGAEPDIDLAT 61

Query: 76  ITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALE 135
           ITDRMA KKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKV EAL+
Sbjct: 62  ITDRMAAKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVNEALQ 121

Query: 136 FAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTS 195
           FAQEELAPRGEE+ SFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTS
Sbjct: 122 FAQEELAPRGEEDHSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTS 181

Query: 196 QSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI 240
           QSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRI +L+TA LEDPA+
Sbjct: 182 QSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRIKNLSTAMLEDPAV 226

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296080906|emb|CBI18750.3| unnamed protein product [Vitis vinifera]

 Score =  435 bits (1118), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/294 (76%), Positives = 236/294 (80%), Gaps = 54/294 (18%)

Query: 1   MSLFWIVIRQLAEIEAM--SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 58
           MSLF IVIR+L EIE+M  SKKVITREEWE+KLNDVKIRKEDMNKLVMNFLVTEGYVDAA
Sbjct: 1   MSLFCIVIRELEEIESMASSKKVITREEWERKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60

Query: 59  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPE-------------- 104
           EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPE              
Sbjct: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEGYVDAAEKFRMESG 120

Query: 105 --------------------------------------ILDTNPQLFFHLQQQRLIELIR 126
                                                 ILDTNPQLFFHLQQQRLIELIR
Sbjct: 121 TEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIR 180

Query: 127 NGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTAS 186
           NGKV+EALEFAQEELAPRGEENQSFLEELE+TVALLAFED SNCPVG+LLDISQRLKTAS
Sbjct: 181 NGKVDEALEFAQEELAPRGEENQSFLEELEKTVALLAFEDFSNCPVGELLDISQRLKTAS 240

Query: 187 EVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI 240
           EVNAAILTSQSHEKDPKLPSLLKML+WAQNQLD+KAAYPRINDL+TA LEDPA+
Sbjct: 241 EVNAAILTSQSHEKDPKLPSLLKMLIWAQNQLDDKAAYPRINDLSTARLEDPAV 294

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
TAIR|locus:2008460	243	AT1G61150 "AT1G61150" [Arabido	0.995	0.983	0.780	3.8e-94
DICTYBASE|DDB_G0279265	228	DDB_G0279265 "UPF0559 protein"	0.908	0.956	0.596	1.1e-66
UNIPROTKB|Q5ZKQ7	228	GID8 "Glucose-induced degradat	0.904	0.951	0.5	1.2e-56
ZFIN|ZDB-GENE-040426-1669	250	gid8a "GID complex subunit 8 h	0.904	0.868	0.513	3.3e-56
UNIPROTKB|Q32L52	228	GID8 "Glucose-induced degradat	0.904	0.951	0.490	5.3e-56
MGI|MGI:1923675	228	Gid8 "GID complex subunit 8 ho	0.904	0.951	0.490	1.4e-55
UNIPROTKB|Q9NWU2	228	GID8 "Glucose-induced degradat	0.904	0.951	0.490	2.3e-55
TAIR|locus:2137926	224	AT4G09300 "AT4G09300" [Arabido	0.887	0.950	0.529	2.1e-52
TAIR|locus:2197404	277	AT1G11110 "AT1G11110" [Arabido	0.904	0.783	0.524	3.5e-52
ASPGD|ASPL0000064925	271	AN7501 [Emericella nidulans (t	0.862	0.763	0.384	6.7e-33

TAIR|locus:2008460 AT1G61150 "AT1G61150" [Arabidopsis thaliana (taxid:3702)]

 Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
 Identities = 189/242 (78%), Positives = 205/242 (84%)

Query:     1 MSLFWIVIRQLAEIE---AMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDA 57
             MSLF I I QL E +   A SKK+ITREEWEKKLN VK+RKEDMN LVMNFLVTEGYV+A
Sbjct:     1 MSLFRIFINQLEEDDEDMATSKKMITREEWEKKLNAVKLRKEDMNTLVMNFLVTEGYVEA 60

Query:    58 AEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQ 117
             AEKF+ ESGT+P+IDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNP+LFFHLQ
Sbjct:    61 AEKFQRESGTKPEIDLATITDRMAVKKAVQNGNVEDAIEKVNDLNPEILDTNPELFFHLQ 120

Query:   118 QQRLIELIRNGKVXXXXXXXXXXXXPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLD 177
             QQRLIELIR GK             PRGEENQ+FLEELE+TVALL F+D S CPV +LLD
Sbjct:   121 QQRLIELIRQGKTEEALEFAQEELAPRGEENQAFLEELEKTVALLVFDDASTCPVKELLD 180

Query:   178 ISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLED 237
             +S RLKTASEVNAAILTSQSHEKDPKLPSLLKML+WAQ QLDEKA YP INDL+T  LED
Sbjct:   181 LSHRLKTASEVNAAILTSQSHEKDPKLPSLLKMLIWAQTQLDEKAVYPHINDLSTGKLED 240

Query:   238 PA 239
             P+
Sbjct:   241 PS 242

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0279265 DDB_G0279265 "UPF0559 protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 130/218 (59%), Positives = 160/218 (73%)

Query:    19 KKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITD 78
             KKVI+  EW+ KL +V I K D+NKLVMN+LV EGY +AA KF+ ES T+  +DLA+I D
Sbjct:    11 KKVISTSEWDDKLAEVNISKSDLNKLVMNYLVIEGYQEAAAKFQEESSTQTTVDLASIAD 70

Query:    79 RMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXX 138
             RMA++ A+QCG+VE  IE VNDLNPEILDTNPQL+FHLQQQ+LIELIR G          
Sbjct:    71 RMAIRSAIQCGDVEKGIEIVNDLNPEILDTNPQLYFHLQQQKLIELIRKGMTAEALKFAQ 130

Query:   139 XXXXPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSH 198
                 P+GEEN  FLEELE+T++LL FED +  P+  LLD SQR KTA E+N+AIL SQS 
Sbjct:   131 DELAPQGEENNKFLEELEKTISLLVFEDTAKSPLSSLLDHSQRQKTAGELNSAILLSQSQ 190

Query:   199 EKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLE 236
             +KDPKLP++LK+L WAQ QLD K  YP+I +  T   E
Sbjct:   191 DKDPKLPTILKLLKWAQTQLDSKCIYPKITNTVTGEYE 228

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q5ZKQ7 GID8 "Glucose-induced degradation protein 8 homolog" [Gallus gallus (taxid:9031)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 109/218 (50%), Positives = 157/218 (72%)

Query:    22 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 81
             IT++EW +KLN++ I++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct:    10 ITKDEWMEKLNNLHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query:    82 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 141
             +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    70 IREMILKGQIQEAISLINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query:   142 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 201
               +GEE++  L E+ERT+ALLAF++    P GDLL++ QR K  SEVN A+L  ++ E  
Sbjct:   130 AEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENREST 189

Query:   202 PKLPSLLKMLLWAQNQLDEKAA-YPRINDLATATLEDP 238
             PKL  LLK+LLWAQN+LD+K   YP++ DL+  T+E+P
Sbjct:   190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGTIEEP 227

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-040426-1669 gid8a "GID complex subunit 8 homolog a (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 112/218 (51%), Positives = 156/218 (71%)

Query:    22 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 81
             IT+EEW  KLN+V I++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP++DL ++ +R+ 
Sbjct:    32 ITKEEWMDKLNNVHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPNVDLDSLDERIK 91

Query:    82 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 141
             +++ V  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    92 IREMVLKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRLRETEAALEFAQSQL 151

Query:   142 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 201
               +GEE++  L E+ERT+ALLAF++    P GDLL++ QR K  SEVN A+L  ++ E  
Sbjct:   152 AEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENREST 211

Query:   202 PKLPSLLKMLLWAQNQLDEKAA-YPRINDLATATLEDP 238
             PKL  LLK+LLWAQN+LD+K   Y R+ DL+  T+EDP
Sbjct:   212 PKLAKLLKLLLWAQNELDQKKVKYSRMTDLSKGTIEDP 249

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q32L52 GID8 "Glucose-induced degradation protein 8 homolog" [Bos taurus (taxid:9913)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 107/218 (49%), Positives = 157/218 (72%)

Query:    22 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 81
             IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct:    10 ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query:    82 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 141
             +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    70 IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query:   142 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 201
               +GEE++  L E+ERT+ALLAF++  + P GDLL++ QR K  SEVN A+L  ++ E  
Sbjct:   130 AEQGEESRECLTEMERTLALLAFDNPEDSPFGDLLNMMQRQKVWSEVNQAVLDYENREST 189

Query:   202 PKLPSLLKMLLWAQNQLDEKAA-YPRINDLATATLEDP 238
             PKL  LLK+LLWAQN+LD+K   YP++ DL+   +E+P
Sbjct:   190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEP 227

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1923675 Gid8 "GID complex subunit 8 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 107/218 (49%), Positives = 154/218 (70%)

Query:    22 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 81
             IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct:    10 ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query:    82 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 141
             +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    70 IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query:   142 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 201
               +GEE++  L E+ERT+ALLAF+     P GDLL + QR K  SEVN A+L  ++ E  
Sbjct:   130 AEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHMMQRQKVWSEVNQAVLDYENREST 189

Query:   202 PKLPSLLKMLLWAQNQLDEKAA-YPRINDLATATLEDP 238
             PKL  LLK+LLWAQN+LD+K   YP++ DL+   +E+P
Sbjct:   190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEP 227

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9NWU2 GID8 "Glucose-induced degradation protein 8 homolog" [Homo sapiens (taxid:9606)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 107/218 (49%), Positives = 153/218 (70%)

Query:    22 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 81
             IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct:    10 ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query:    82 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 141
             +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    70 IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query:   142 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 201
               +GEE++  L E+ERT+ALLAF+     P GDLL   QR K  SEVN A+L  ++ E  
Sbjct:   130 AEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHTMQRQKVWSEVNQAVLDYENREST 189

Query:   202 PKLPSLLKMLLWAQNQLDEKAA-YPRINDLATATLEDP 238
             PKL  LLK+LLWAQN+LD+K   YP++ DL+   +E+P
Sbjct:   190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEP 227

GO:0005634 "nucleus" evidence=IEA

TAIR|locus:2137926 AT4G09300 "AT4G09300" [Arabidopsis thaliana (taxid:3702)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 116/219 (52%), Positives = 147/219 (67%)

Query:    19 KKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITD 78
             K V+T E+WE KL+DV+I  EDMN+LVMN LV EGY +AAEKF+ ES T P+ DLA++ +
Sbjct:     5 KIVVTSEDWESKLSDVEILIEDMNRLVMNLLVAEGYREAAEKFKEESITMPEEDLASMNE 64

Query:    79 RMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXX 138
             R+ V KA++  N+EDAIEK+N LNPEI+ T+    FHL QQ LIELIR  K         
Sbjct:    65 RLEVIKAIESRNLEDAIEKLNALNPEIIKTS----FHLHQQMLIELIREKKTEEAVAFAQ 120

Query:   139 XXXXPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSH 198
                 P  EEN++   ELE+TV +L  E + NCP  +L   SQ ++TAS VN AI TSQ+ 
Sbjct:   121 EKLAPLAEENEALQRELEKTVCILVTEGLPNCPSRELFHNSQWIRTASHVNEAIHTSQTG 180

Query:   199 EKDPKLPSLLKMLLWAQNQLDEKAAY--PRINDLATATL 235
             EK P+L  LLK L+W QNQLDEK  Y  PR+ND +T  L
Sbjct:   181 EKGPELERLLKELIWTQNQLDEKTVYVYPRMNDFSTGQL 219

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2197404 AT1G11110 "AT1G11110" [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 118/225 (52%), Positives = 155/225 (68%)

Query:    14 IEAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDL 73
             I+   KK+I  + WE+ L   +IRKEDMN+LVMNFLV EGY++A EKF+ ESGT+  + +
Sbjct:    48 IQEQPKKLIMSDVWEQYLTTAEIRKEDMNRLVMNFLVVEGYLEAVEKFQKESGTK-QVGV 106

Query:    74 ATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNG-KVXX 132
             A+I+DR+AVK+ ++ G++EDA+EK+N +NPEIL TN    F L QQR IE IR G  +  
Sbjct:   107 ASISDRLAVKRDIESGDLEDAVEKLNAINPEILKTN----FSLNQQRFIERIRIGVTIKE 162

Query:   133 XXXXXXXXXXPRGEENQSFLEELERTVALLAFEDVSNCPVGD--LLDISQRLKTASEVNA 190
                       P  E+N +FLEELE+T+A+L F D+ + P  +  LLD S+  KTA+EVNA
Sbjct:   163 TFNFAEKELKPLVEQNLAFLEELEKTMAILRFRDLPDIPEAERELLDNSRWFKTAAEVNA 222

Query:   191 AILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATL 235
             AILTSQ+  K PKL  LLKML W QNQLDEK  YPR++ L T  L
Sbjct:   223 AILTSQTGLKCPKLLDLLKMLTWTQNQLDEKVEYPRMSVLPTGQL 267

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000064925 AN7501 [Emericella nidulans (taxid:162425)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 83/216 (38%), Positives = 125/216 (57%)

Query:    23 TREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAV 82
             T   +E+K+++VK  K DMN+LVM++LVT GY  AA+KF +E+  EP +D+ +I +R+ +
Sbjct:    17 TWHHFERKVDEVKPSKTDMNRLVMDYLVTNGYPAAAQKFALEANIEP-VDVESIRERVEI 75

Query:    83 KKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRN------GKVXXXXXX 136
             + A+  GN++ AIEK+N+LNP+ILD NP L F L + +L+ELIR+      G +      
Sbjct:    76 RTAIYSGNIQAAIEKINELNPQILDENPSLHFSLLRLQLVELIRSCSVNPDGDITPALEF 135

Query:   137 XXXXXXPRGEENQSFLEELERTVALLAFEDVSNCP-VGDLLDISQRLKTASEVNAAILTS 195
                   PR   N  FLE+LE+T+ALL +   +  P +  LL    R    ++VNAAIL  
Sbjct:   136 ATSQLAPRAPTNPQFLEDLEKTLALLIYPKENLTPSLAPLLHSDLRRDIYAKVNAAILQD 195

Query:   196 QSHEKDPKLPSLLKMLLWAQNQLDE-KAAYPRINDL 230
             Q    +  L    ++  WA+ +  E K   P   DL
Sbjct:   196 QGARTEALLCDFARLYAWAEQKAREAKKDIPDKLDL 231

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9NWU2	GID8_HUMAN	No assigned EC number	0.5321	0.9041	0.9517	yes	no
Q54X16	GID8_DICDI	No assigned EC number	0.6376	0.9083	0.9561	yes	no
Q32L52	GID8_BOVIN	No assigned EC number	0.5321	0.9041	0.9517	yes	no
Q9D7M1	GID8_MOUSE	No assigned EC number	0.5321	0.9041	0.9517	yes	no
Q5ZKQ7	GID8_CHICK	No assigned EC number	0.5412	0.9041	0.9517	yes	no
A7SWD3	GID8_NEMVE	No assigned EC number	0.5069	0.9	0.96	N/A	no
Q10446	YDED_SCHPO	No assigned EC number	0.3546	0.8041	0.8041	yes	no
Q6PC55	GID8_DANRE	No assigned EC number	0.5550	0.9041	0.9517	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	240
pfam10607	144	pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif	1e-41
smart00757	99	smart00757, CRA, CT11-RanBPM	2e-25
smart00668	58	smart00668, CTLH, C-terminal to LisH motif	1e-11
pfam08513	27	pfam08513, LisH, LisH	8e-07
smart00667	34	smart00667, LisH, Lissencephaly type-1-like homolo	3e-06

>gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain

 Score =  138 bits (350), Expect = 1e-41
 Identities = 56/146 (38%), Positives = 83/146 (56%), Gaps = 3/146 (2%)

Query: 75  TITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEAL 134
              +R  +++++  G++E+A+E  N+  PE+L  N  L F L+ Q+ IELIR GK+ EAL
Sbjct: 1   VFKERNKIRESLLNGDLEEALEWCNENKPELLKINSNLEFELRLQQFIELIREGKILEAL 60

Query: 135 EFAQEELAPRGEENQSFLEELERTVALLAFEDVSNC-PVGDLLDISQRLKTASEVNAAIL 193
           E+A+E LAP   E    L+E+++ + LLAF D ++  P   LL  S+  K A+E N AIL
Sbjct: 61  EYARENLAPFFNE--QHLKEIQKLMGLLAFPDPTDSSPYKSLLSPSRWEKLANEFNRAIL 118

Query: 194 TSQSHEKDPKLPSLLKMLLWAQNQLD 219
                  +  L  LLK  L A   L 
Sbjct: 119 KLLGLSSESPLEILLKAGLSALKTLL 144

RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif. Length = 144

>gnl|CDD|214806 smart00757, CRA, CT11-RanBPM

 Score = 95.4 bits (238), Expect = 2e-25
 Identities = 44/96 (45%), Positives = 59/96 (61%), Gaps = 2/96 (2%)

Query: 128 GKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNC-PVGDLLDISQRLKTAS 186
           GK+EEAL +A+E LAP  +E++ FL+ELE+T+ALLA+ D +   P  +LL  SQR K A 
Sbjct: 1   GKIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAE 60

Query: 187 EVNAAILTSQS-HEKDPKLPSLLKMLLWAQNQLDEK 221
           E+N+AIL        +  L  LL   L A   L EK
Sbjct: 61  ELNSAILELLHGKSSESPLEILLSAGLAALKTLLEK 96

protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi). Length = 99

>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif

 Score = 57.6 bits (140), Expect = 1e-11
 Identities = 19/58 (32%), Positives = 39/58 (67%)

Query: 75  TITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEE 132
              +R  +++ +  G+ ++A+E ++ L P +L+ N +L F L++Q+ +EL+R GK+EE
Sbjct: 1   EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKLEE 58

Alpha-helical motif of unknown function. Length = 58

>gnl|CDD|149534 pfam08513, LisH, LisH

 Score = 43.8 bits (105), Expect = 8e-07
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 39 EDMNKLVMNFLVTEGYVDAAEKFRMES 65
          E++N+L+ ++LV  GY + AE F  ES
Sbjct: 1  EELNRLIYDYLVKSGYKETAEAFAKES 27

The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex. Length = 27

>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif

 Score = 42.4 bits (101), Expect = 3e-06
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 36 IRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEP 69
          I + ++N+L++ +L+  GY + AE  + ESG   
Sbjct: 1  ISRSELNRLILEYLLRNGYEETAETLQKESGLSL 34

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
KOG2659	228	consensus LisH motif-containing protein [Cytoskele	100.0
KOG0396	389	consensus Uncharacterized conserved protein [Funct	99.97
PF10607	145	CLTH: CTLH/CRA C-terminal to LisH motif domain; In	99.97
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	99.91
smart00757	99	CRA CT11-RanBPM. protein-protein interaction domai	99.73
smart00668	58	CTLH C-terminal to LisH motif. Alpha-helical motif	99.36
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.07
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	98.45
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	98.22
KOG1477	469	consensus SPRY domain-containing proteins [General	98.15
KOG0275	508	consensus Conserved WD40 repeat-containing protein	97.98
COG5109	396	Uncharacterized conserved protein, contains RING Z	97.54
KOG1333	241	consensus Uncharacterized conserved protein [Funct	95.09
PF09398	81	FOP_dimer: FOP N terminal dimerisation domain; Int	89.12

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]

Probab=100.00  E-value=8.5e-42  Score=284.71  Aligned_cols=219  Identities=58%  Similarity=0.895  Sum_probs=211.9

Q ss_pred             cCCCHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCHHHHHHHHHHhhCCCC-CCCHHhHHHHHHHHHHHhcCCHHHHHHHH
Q 026349           20 KVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEP-DIDLATITDRMAVKKAVQCGNVEDAIEKV   98 (240)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~l~~LI~~yL~~~Gy~~ta~~f~~e~~i~~-~~~~~~~~~r~~I~~~I~~G~i~~Ai~~i   98 (240)
                      +-++.+.|...+..+.+.+.++|+||++||+++||.++|..|.+|+|+.+ ..|.+.+..|.+|+.+|..|+++.|++.+
T Consensus         8 ~~~~~~~w~~~~~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~i   87 (228)
T KOG2659|consen    8 SFSTKEEWEEQLMKVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKV   87 (228)
T ss_pred             ccCchhhhHHHHhccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHH
Confidence            55888999999999999999999999999999999999999999999987 88999999999999999999999999999


Q ss_pred             HhhChhhhhccccchhhhHHHHHHHHHhcCChHHHHHHHHHhcCcccCCchHHHHHHHHHhhhhhccCCCCCccccccCh
Q 026349           99 NDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI  178 (240)
Q Consensus        99 ~~~~p~l~~~~s~l~F~L~~q~fIEli~~~~~~~Ai~y~r~~l~p~~~~~~~~~~~l~~~~~lL~~~~~~~sp~~~l~~~  178 (240)
                      +.+.|.++..+..|.|.|++|++|||||.|...+||+|+|++++|++..+++.+.+++++|++|+|++++.||+++++..
T Consensus        88 n~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~~~  167 (228)
T KOG2659|consen   88 NQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELLSQ  167 (228)
T ss_pred             HHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999899999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhhh-ccCCCCccCcCCcccCCC
Q 026349          179 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP  238 (240)
Q Consensus       179 ~~r~~la~~vn~~il~~~g~~~~s~Le~l~k~~~~~q~~l~~-~~~~p~~~~~~~~~~~~~  238 (240)
                      ++|.++|..+|++|+.+++....|.|..|++...|++..+.. +..+|+++++.+|.++.|
T Consensus       168 s~R~kvA~~vN~aiL~~~~~~~~~~l~~llk~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  228 (228)
T KOG2659|consen  168 SLRQKVASEVNSAILASQEHESEPKLPFLLKLISWAQEELDREKFSEPHFKDLTKIKSEEP  228 (228)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhHhhccccccCCccccccCCC
Confidence            999999999999999999988899999999999999998866 678999999999999876

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.97  E-value=2.1e-30  Score=227.06  Aligned_cols=180  Identities=23%  Similarity=0.327  Sum_probs=171.2

Q ss_pred             CCCHHHHHHHHHHHHHHhCHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhccccchh
Q 026349           35 KIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFF  114 (240)
Q Consensus        35 ~~~~~~l~~LI~~yL~~~Gy~~ta~~f~~e~~i~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~i~~~~p~l~~~~s~l~F  114 (240)
                      ..++..++++|+|||.|+||++||..|.+++.++..+|.|.+...+.|+++|++|++.+|+.||++|...|.+.+|.++|
T Consensus       112 ~w~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~~S~lEf  191 (389)
T KOG0396|consen  112 KWPRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKEESSLEF  191 (389)
T ss_pred             HhHHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccchhhh
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHhcCcccCCchHHHHHHHHHhhhhhccC-CCCCccccccChhhHHHHHHHHHHHHH
Q 026349          115 HLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFED-VSNCPVGDLLDISQRLKTASEVNAAIL  193 (240)
Q Consensus       115 ~L~~q~fIEli~~~~~~~Ai~y~r~~l~p~~~~~~~~~~~l~~~~~lL~~~~-~~~sp~~~l~~~~~r~~la~~vn~~il  193 (240)
                      .++.|+|||||+.+++.+||+|+|++++|++..+   .++++.+||+++|+. ++.++|..+++..||+.++..|-+..+
T Consensus       192 ~lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~---~~~Lk~a~g~laF~~~t~~sky~~l~~~~rw~~l~~lF~s~a~  268 (389)
T KOG0396|consen  192 QLRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSH---KSDLKLAMGLLAFPKYTSSSKYLNLLTADRWSVLADLFLSEAL  268 (389)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhh---HHHHHHHHHhhcCccccCcccccCcccHHHHHHHHHHhhHHHH
Confidence            9999999999999999999999999999999754   789999999999985 456779999999999999999999999


Q ss_pred             hhCCCCCCCcHHHHHHHHHHHHHH
Q 026349          194 TSQSHEKDPKLPSLLKMLLWAQNQ  217 (240)
Q Consensus       194 ~~~g~~~~s~Le~l~k~~~~~q~~  217 (240)
                      +.+|.+..|+|-..++..+.+++.
T Consensus       269 ~l~~i~~~~~L~~~l~~GLsalKT  292 (389)
T KOG0396|consen  269 KLFGIPINPALTIYLQAGLSALKT  292 (389)
T ss_pred             HHhCCCCCcHHHHHHHhhhhhccc
Confidence            999999999999999999888876

>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10

Probab=99.97  E-value=1.1e-30  Score=207.61  Aligned_cols=140  Identities=38%  Similarity=0.586  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhccccchhhhHHHHHHHHHhcCChHHHHHHHHHhcCcccCCchHHHHHH
Q 026349           76 ITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEEL  155 (240)
Q Consensus        76 ~~~r~~I~~~I~~G~i~~Ai~~i~~~~p~l~~~~s~l~F~L~~q~fIEli~~~~~~~Ai~y~r~~l~p~~~~~~~~~~~l  155 (240)
                      |.+|+.|+++|++||+++|++|+++++|.+++.++.++|.|++|+|||||+.|+..+||+|+|+++.|+..   ...+++
T Consensus         2 ~~~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~---~~~~~l   78 (145)
T PF10607_consen    2 FKERKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFND---EFLEEL   78 (145)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHH---HHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999977654   458899


Q ss_pred             HHHhhhhhccCCCC---CccccccChhhHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHh
Q 026349          156 ERTVALLAFEDVSN---CPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQL  218 (240)
Q Consensus       156 ~~~~~lL~~~~~~~---sp~~~l~~~~~r~~la~~vn~~il~~~g~~~~s~Le~l~k~~~~~q~~l  218 (240)
                      +++|++|+|+++..   +||++++++.+|+.|++.||++++..+|.+..|+|+.+++++.++.+++
T Consensus        79 ~~~~~lL~~~~~~~~~~s~~~~l~~~~~~~~la~~~~~~~l~~~~~~~~s~L~~~~~~g~~~l~~l  144 (145)
T PF10607_consen   79 KKLMSLLAYPDPEEPLPSPYKELLSPERREELAEEFNSAILKSYGLPKESPLEVILKAGLSALKTL  144 (145)
T ss_pred             HHHHHHHHcCCcccccchHHHHHhChHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhc
Confidence            99999999999987   7999999999999999999999999999999999999999999998764

RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=2.2e-23  Score=184.93  Aligned_cols=177  Identities=19%  Similarity=0.297  Sum_probs=160.9

Q ss_pred             cCCCCHHH-HHHHHHHHHHHhCHHHHHHHHHHhhCCCCC--CCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcc
Q 026349           33 DVKIRKED-MNKLVMNFLVTEGYVDAAEKFRMESGTEPD--IDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTN  109 (240)
Q Consensus        33 ~~~~~~~~-l~~LI~~yL~~~Gy~~ta~~f~~e~~i~~~--~~~~~~~~r~~I~~~I~~G~i~~Ai~~i~~~~p~l~~~~  109 (240)
                      ++..+... +|.+|+.|++|+|..|+|..|++|+|....  .....|.+.++|.++|..||+.+|++|+..++..|.+.+
T Consensus       110 ~v~~~~~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~  189 (394)
T KOG2817|consen  110 SVDFDTSQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKS  189 (394)
T ss_pred             CcChhHHHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcccc
Confidence            56666555 499999999999999999999999999754  445788999999999999999999999999999999999


Q ss_pred             ccchhhhHHHHHHHHHhcCChH--HHHHHHHHhcCcccCCchHHHHHHHHHhhhhhccCC--CCCccccccChhhHHHHH
Q 026349          110 PQLFFHLQQQRLIELIRNGKVE--EALEFAQEELAPRGEENQSFLEELERTVALLAFEDV--SNCPVGDLLDISQRLKTA  185 (240)
Q Consensus       110 s~l~F~L~~q~fIEli~~~~~~--~Ai~y~r~~l~p~~~~~~~~~~~l~~~~~lL~~~~~--~~sp~~~l~~~~~r~~la  185 (240)
                      +.|+|.|+.++|+++++.|...  +||.|+|++++||+.++   .++++++|+++.|-..  +++||.+++++..|..+.
T Consensus       190 s~LE~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~---~~eIQklm~sl~~l~~gl~~spy~~~ls~~~w~~~~  266 (394)
T KOG2817|consen  190 SSLEFKLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADH---LREIQKLMGSLLYLRNGLEKSPYSEILSPKLWKELT  266 (394)
T ss_pred             ccHHHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccch---HHHHHHHHHHHHHHHcCCCCCChHHHhCHHHHHHHH
Confidence            9999999999999999998766  99999999999998775   7899999999998743  789999999999999999


Q ss_pred             HHHHHHHHhhCCCCCCCcHHHHHHHHH
Q 026349          186 SEVNAAILTSQSHEKDPKLPSLLKMLL  212 (240)
Q Consensus       186 ~~vn~~il~~~g~~~~s~Le~l~k~~~  212 (240)
                      ..|-+..+...|.+.+|+|..++....
T Consensus       267 ~~f~r~ycallg~s~eSPL~v~v~aG~  293 (394)
T KOG2817|consen  267 EEFTREYCALLGISVESPLSVLVNAGC  293 (394)
T ss_pred             HHHHHHHHHHcCCCccCcHHHHHHhhH
Confidence            999999999999999999888777654

>smart00757 CRA CT11-RanBPM

Probab=99.73  E-value=4.1e-17  Score=121.22  Aligned_cols=93  Identities=46%  Similarity=0.568  Sum_probs=87.6

Q ss_pred             ChHHHHHHHHHhcCcccCCchHHHHHHHHHhhhhhccCC-CCCccccccChhhHHHHHHHHHHHHHhhC-CCCCCCcHHH
Q 026349          129 KVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDV-SNCPVGDLLDISQRLKTASEVNAAILTSQ-SHEKDPKLPS  206 (240)
Q Consensus       129 ~~~~Ai~y~r~~l~p~~~~~~~~~~~l~~~~~lL~~~~~-~~sp~~~l~~~~~r~~la~~vn~~il~~~-g~~~~s~Le~  206 (240)
                      ++.+||+|||++++|+...++.+.++++++||+|+|+++ +.+||++++++++|+.|++.||++++..+ |.+.+|+|+.
T Consensus         2 ~~~eAi~yar~~l~~~~~~~~~~~~el~~~m~llaf~~~~~~sp~~~ll~~~~~~~la~~~n~~~l~~~~~~~~~s~L~~   81 (99)
T smart00757        2 KIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAEELNSAILELLHGKSSESPLEI   81 (99)
T ss_pred             cHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHhcCCCCCCccHHHHCCHHHHHHHHHHHHHHHHHHccCCCCCChHHH
Confidence            578999999999999998887778899999999999999 89999999999999999999999999999 9999999999


Q ss_pred             HHHHHHHHHHHhhhc
Q 026349          207 LLKMLLWAQNQLDEK  221 (240)
Q Consensus       207 l~k~~~~~q~~l~~~  221 (240)
                      ++++..|+++.+...
T Consensus        82 ~~~~~~~~~~~l~~~   96 (99)
T smart00757       82 LLSAGLAALKTLLEK   96 (99)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999988653

protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi)

>smart00668 CTLH C-terminal to LisH motif

Probab=99.36  E-value=1.3e-12  Score=87.48  Aligned_cols=55  Identities=31%  Similarity=0.669  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhccccchhhhHHHHHHHHHhcCCh
Q 026349           76 ITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKV  130 (240)
Q Consensus        76 ~~~r~~I~~~I~~G~i~~Ai~~i~~~~p~l~~~~s~l~F~L~~q~fIEli~~~~~  130 (240)
                      +..+..|+++|+.|+|++|++|+++++|.+.+.++.+.|.|++|+|+|+++.|+.
T Consensus         2 ~~~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~L~~q~~lell~~~~~   56 (58)
T smart00668        2 FDERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKL   56 (58)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhHHHHHHHHHHHHcCCc
Confidence            5678999999999999999999999999999999999999999999999998864

Alpha-helical motif of unknown function.

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.07  E-value=1.4e-09  Score=97.76  Aligned_cols=172  Identities=15%  Similarity=0.172  Sum_probs=133.1

Q ss_pred             CCHHHHHHHHHHHHHHhCHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhccccchhh
Q 026349           36 IRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFH  115 (240)
Q Consensus        36 ~~~~~l~~LI~~yL~~~Gy~~ta~~f~~e~~i~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~i~~~~p~l~~~~s~l~F~  115 (240)
                      +.+.+..+++.+.|+..||.+++..++.|+|+.....     .-+.+.++++.|+|+.++.-+....-...+......|.
T Consensus        15 ikk~efi~il~q~l~slgy~~S~~~lE~es~ll~~ta-----t~klf~q~vlqg~w~q~v~~~~~i~~~de~~~~ea~fL   89 (519)
T KOG0293|consen   15 IKKGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTA-----TTKLFDQQVLQGQWDQQVMSLVRISFEDERNRKEAMFL   89 (519)
T ss_pred             eccchhhHhHHHHHHhcCccccchhhHHhhCcccccc-----hHHHHHHHHHcccHHHHHHHHhhccCcchhhhHHHHHH
Confidence            4567789999999999999999999999999975432     34568899999999999998877633334445778999


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHhcCcccCCchHHHHHHHHHhhhhhccCCCCC-cccc-ccChhhHHHHHHHHHHHHH
Q 026349          116 LQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNC-PVGD-LLDISQRLKTASEVNAAIL  193 (240)
Q Consensus       116 L~~q~fIEli~~~~~~~Ai~y~r~~l~p~~~~~~~~~~~l~~~~~lL~~~~~~~s-p~~~-l~~~~~r~~la~~vn~~il  193 (240)
                      +.+|.|+|+++.|++..|+...|+.+.+....    .+++.++.+.|.+++...+ .... -.....|.+|.+++.+-|.
T Consensus        90 v~kQ~fLEf~k~~~is~al~~l~~~~~~lr~~----~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~  165 (519)
T KOG0293|consen   90 VNKQIFLEFLKTGSISHALPVLRNPVLYLRKN----KKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIP  165 (519)
T ss_pred             HHHHHHHHHHhhccHhhhhHhhhcchhhhhhh----HHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCC
Confidence            99999999999999999999999877776542    5677777778887753221 1110 1113458899999998887


Q ss_pred             hhCCCCCCCcHHHHHHHHHHHHHH
Q 026349          194 TSQSHEKDPKLPSLLKMLLWAQNQ  217 (240)
Q Consensus       194 ~~~g~~~~s~Le~l~k~~~~~q~~  217 (240)
                      ...- .|+-+||.|+++++..|..
T Consensus       166 p~il-lP~rRLehLl~qAv~~Q~d  188 (519)
T KOG0293|consen  166 PNIL-LPKRRLEHLLEQAVKYQRD  188 (519)
T ss_pred             Hhhc-CChHHHHHHHHHHHHHHHh
Confidence            6665 4578999999999987754

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=98.45  E-value=3e-07  Score=52.06  Aligned_cols=27  Identities=37%  Similarity=0.811  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHhh
Q 026349           39 EDMNKLVMNFLVTEGYVDAAEKFRMES   65 (240)
Q Consensus        39 ~~l~~LI~~yL~~~Gy~~ta~~f~~e~   65 (240)
                      ++||.+|.+||.++||.+||.+|.+|+
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            469999999999999999999999985

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=98.22  E-value=2.9e-06  Score=49.91  Aligned_cols=32  Identities=31%  Similarity=0.754  Sum_probs=29.5

Q ss_pred             CHHHHHHHHHHHHHHhCHHHHHHHHHHhhCCC
Q 026349           37 RKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE   68 (240)
Q Consensus        37 ~~~~l~~LI~~yL~~~Gy~~ta~~f~~e~~i~   68 (240)
                      .+.+++++|++||.++||.+||.+|++|+|+.
T Consensus         2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        2 SRSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            46789999999999999999999999999874

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]

Probab=98.15  E-value=2.9e-07  Score=86.07  Aligned_cols=185  Identities=24%  Similarity=0.211  Sum_probs=136.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhCHHHHHHHHHHhhCCCCC---------CC---------HHhHHHHHHHHHHHhcCCHHHHH
Q 026349           34 VKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPD---------ID---------LATITDRMAVKKAVQCGNVEDAI   95 (240)
Q Consensus        34 ~~~~~~~l~~LI~~yL~~~Gy~~ta~~f~~e~~i~~~---------~~---------~~~~~~r~~I~~~I~~G~i~~Ai   95 (240)
                      ...+.......+..|+++.|+.+++..|+..+.....         .+         ...+..++.......+|....++
T Consensus       245 ~~~s~~l~t~~~~~~~l~~~~~~s~~~~s~~~~~~~~~~~~~e~~s~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~  324 (469)
T KOG1477|consen  245 EVISFNLSTVPYPYFLLPGGYEESIAYFSTGARRFNDPFTGKEENSIDAVGSQTDKIGLDYHQRKGRGQFTRNGAYNAAL  324 (469)
T ss_pred             ceecccccCCCccceecCcchhhhhhhhcchhhccCCcccchhhhhhhccccccchhhhhhhhhcCcceeechhhhcccc
Confidence            3333344456899999999999999999987654210         01         11122233333333444444443


Q ss_pred             HHHHhhChhhhh-ccccchhhhHHHHHHHHHhcCChHHHHHHHHHhcCcccC--CchHHHHHHHHHhhhhhccCCCCCcc
Q 026349           96 EKVNDLNPEILD-TNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGE--ENQSFLEELERTVALLAFEDVSNCPV  172 (240)
Q Consensus        96 ~~i~~~~p~l~~-~~s~l~F~L~~q~fIEli~~~~~~~Ai~y~r~~l~p~~~--~~~~~~~~l~~~~~lL~~~~~~~sp~  172 (240)
                      .-.........+ ..+...+.+.|+.++.+.+.|.+...+++.+.++++...  .+......+..+++|++|.+|..||.
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~v~~e~~~~k~~l~~~~g~~~~~~~~~~~~~s~~Llays~p~~s~~  404 (469)
T KOG1477|consen  325 IPTYRKVGQVFEVDYPQRGAKDPCGLHVNLGRAGFVFIEANAKKWELAKDYGIKKNSAAVGMLSDSSSLLAYSDPEESPV  404 (469)
T ss_pred             cccccccceeecccccchhhccchhhhhhHHHHHHHHHHHHHHHHhhhhhhCcCccccccccccchHHHHHhcCcccCcc
Confidence            333322221111 347789999999999999999999999999999888755  33345778999999999999999999


Q ss_pred             ccccChhhHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHh
Q 026349          173 GDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQL  218 (240)
Q Consensus       173 ~~l~~~~~r~~la~~vn~~il~~~g~~~~s~Le~l~k~~~~~q~~l  218 (240)
                      .+.+++..|+-+++.+|.+++...+.++++.|+.++.+.-.+-..+
T Consensus       405 g~~~~~~~~e~v~~~~n~~il~t~~~~~~~~l~~~l~~~~~~~~~~  450 (469)
T KOG1477|consen  405 GYLLDPIQREPVAEALNSAILETDNNSKDPDLERVLSQTPAELSLY  450 (469)
T ss_pred             ccccCcccchhHHhhhcccccccCCCCccchhhhhhccchhhHhhh
Confidence            9999999999999999999999999999999999999977665554

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=97.98  E-value=6.2e-05  Score=66.53  Aligned_cols=164  Identities=19%  Similarity=0.243  Sum_probs=113.9

Q ss_pred             CCCCHHHHHHHHHHHHHHhCHHHHHHHHHHhhCCCC-CCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhccccc
Q 026349           34 VKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEP-DIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQL  112 (240)
Q Consensus        34 ~~~~~~~l~~LI~~yL~~~Gy~~ta~~f~~e~~i~~-~~~~~~~~~r~~I~~~I~~G~i~~Ai~~i~~~~p~l~~~~s~l  112 (240)
                      +.+...++.++|.+||-.+.+..|...|.+|+++.. .+|     -...+.+.|-+|+||..+.-++...     ....-
T Consensus         3 ieiessdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVD-----Svd~Fv~dI~sG~WD~VL~~vqsLK-----LP~kk   72 (508)
T KOG0275|consen    3 IEIESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVD-----SVDGFVNDINSGHWDTVLKTVQSLK-----LPDKK   72 (508)
T ss_pred             eeeecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeech-----hHHHHHHhcccCchHHHHHHHHhcc-----CchhH
Confidence            455566899999999999999999999999998753 222     2344788999999999999987653     22334


Q ss_pred             hhhhHHHHHHHHHhcCChHHHHHHHHHhcCccc---CCchHHHHHHHHHhhhhh--ccCCCCCccccccChhhHHHHHHH
Q 026349          113 FFHLQQQRLIELIRNGKVEEALEFAQEELAPRG---EENQSFLEELERTVALLA--FEDVSNCPVGDLLDISQRLKTASE  187 (240)
Q Consensus       113 ~F~L~~q~fIEli~~~~~~~Ai~y~r~~l~p~~---~~~~~~~~~l~~~~~lL~--~~~~~~sp~~~l~~~~~r~~la~~  187 (240)
                      .-.|+.|-.+|||.-..+..|-..+|+. .|..   ...|+..-.++   .+|.  |-||... |.+--.+.||..+|..
T Consensus        73 L~dLYEqivlEliELREL~tAR~~lRQT-dpM~~lKQ~~peRy~~lE---~ll~R~YFDp~Ea-Y~dssKEkrRa~IAQ~  147 (508)
T KOG0275|consen   73 LIDLYEQIVLELIELRELGTARSLLRQT-DPMIMLKQIQPERYIRLE---NLLNRSYFDPREA-YGDSSKEKRRAVIAQA  147 (508)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHhcc-CceehhhccChHHHHHHH---HHhcccccChhhh-cCcchHHHHHHHHHHH
Confidence            5689999999999988888888888853 3332   22333333444   3443  5566433 5553345667777766


Q ss_pred             HHHHHHhhCCCCCCCcHHHHHHHHHHHHH
Q 026349          188 VNAAILTSQSHEKDPKLPSLLKMLLWAQN  216 (240)
Q Consensus       188 vn~~il~~~g~~~~s~Le~l~k~~~~~q~  216 (240)
                      +...    ....+.|+|..|+-|++-.|.
T Consensus       148 ls~E----V~VVppSRLlaLlGQaLKWQq  172 (508)
T KOG0275|consen  148 LSGE----VHVVPPSRLLALLGQALKWQQ  172 (508)
T ss_pred             hcCc----eEEcChHHHHHHHHHHhhhHh
Confidence            5443    344567888888888775553

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.54  E-value=0.0019  Score=56.81  Aligned_cols=176  Identities=13%  Similarity=0.064  Sum_probs=123.3

Q ss_pred             CCCCHHHHHHHHHHHHHHhCHHHHHHHHHHhhCCCCCC-CHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhccccc
Q 026349           34 VKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDI-DLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQL  112 (240)
Q Consensus        34 ~~~~~~~l~~LI~~yL~~~Gy~~ta~~f~~e~~i~~~~-~~~~~~~r~~I~~~I~~G~i~~Ai~~i~~~~p~l~~~~s~l  112 (240)
                      .+.+...++.+-..++.+.|-..-+..|+.+.|..+.. ..+.|...+.|.+.|.+.+...-++|. +....+.+.++..
T Consensus        96 f~~~~v~~~~~~~l~~~n~~dv~~~hi~~~~~g~~e~~~~~~~f~~lK~v~~gI~~k~~~l~iE~~-Qi~gyl~kgdtes  174 (396)
T COG5109          96 FSTQTVTYLVVYYLLENNCADVVERHISETKDGKDEIIKIRDGFVKLKKVISGISEKSTFLLIEFL-QIEGYLSKGDTES  174 (396)
T ss_pred             CccceeeehHHHHHHHhhHHHHHHHHHHHhhcCccchhhHHHHHHHHHHHHHhhccchhHhHHHHH-HhcCccccCCchh
Confidence            34444555566666666777777788899999987643 458899999999999999999999999 4445566666666


Q ss_pred             hhhhHHHH--HHHHHhcCChHHHHHHHHHhcCcccCCchHHHHHHHHHhhhhhccCC------C----------------
Q 026349          113 FFHLQQQR--LIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDV------S----------------  168 (240)
Q Consensus       113 ~F~L~~q~--fIEli~~~~~~~Ai~y~r~~l~p~~~~~~~~~~~l~~~~~lL~~~~~------~----------------  168 (240)
                      ++.++...  ++-++.+ ++++|+.++++.++.|...|   ...++..+-.+.+...      +                
T Consensus       175 el~l~~~~~esl~l~hk-~~~~a~r~c~t~~a~f~~kh---~~dv~~~~~~l~nap~dcfrhrekelmqnI~~~l~ksli  250 (396)
T COG5109         175 ELELYLVSHESLLLIHK-RYDEALRLCFTKLASFVPKH---IQDVKPLLRFLVNAPTDCFRHREKELMQNIQEALKKSLI  250 (396)
T ss_pred             hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh---ccchHHHHHHHHcCchHHhhhcchhHHHHHHHHHHHhhc
Confidence            66665554  4444444 79999999999988776443   3445554444444210      0                


Q ss_pred             CCccccccC--hhhHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHH
Q 026349          169 NCPVGDLLD--ISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQ  215 (240)
Q Consensus       169 ~sp~~~l~~--~~~r~~la~~vn~~il~~~g~~~~s~Le~l~k~~~~~q  215 (240)
                      +-|- +..|  ...|..+...|.+.+++..|++.+|+|.-++....-+-
T Consensus       251 gqPi-EdIDkvnk~~k~l~~lF~~eycaa~gm~~~spL~~~v~tG~iaf  298 (396)
T COG5109         251 GQPI-EDIDKVNKSRKKLIELFKSEYCAANGMPNRSPLRELVETGTIAF  298 (396)
T ss_pred             CCcH-HHHHHhhhhHHHHHHHHHHHHHHhcCCCccChHHHHHHhhhHHH
Confidence            0010 1111  25689999999999999999999999999888766543

>KOG1333 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.09  E-value=0.23  Score=41.37  Aligned_cols=142  Identities=13%  Similarity=0.152  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhc--------cc
Q 026349           39 EDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDT--------NP  110 (240)
Q Consensus        39 ~~l~~LI~~yL~~~Gy~~ta~~f~~e~~i~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~i~~~~p~l~~~--------~s  110 (240)
                      +.++.+|-+||+-.|+.-|.++|-.|.........-.=...-++.++|...|++.--+.=.....+++..        -.
T Consensus         6 ~~tDelvReYL~frgf~~tLkalD~E~~~~Ke~~frvdrivdq~~~a~q~~Dl~aLr~~W~~l~~r~Fs~Le~~y~~~~~   85 (241)
T KOG1333|consen    6 ERTDELVREYLLFRGFTHTLKALDAEIKADKEKGFRVDRIVDQLQQAMQVYDLAALRDYWSYLERRLFSRLEDIYRPTIH   85 (241)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhHHHhhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            4578899999999999999999988876653322222223455677788888877655444333333322        13


Q ss_pred             cchhhhHHHHHHHHHhcCChHHHHHHHHHhcCcccCCchHHHHHHHHHhhhhhcc---CC-CCCccccccChhhHHHHHH
Q 026349          111 QLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFE---DV-SNCPVGDLLDISQRLKTAS  186 (240)
Q Consensus       111 ~l~F~L~~q~fIEli~~~~~~~Ai~y~r~~l~p~~~~~~~~~~~l~~~~~lL~~~---~~-~~sp~~~l~~~~~r~~la~  186 (240)
                      .++--+.+...+--+.++.+++|-+|.++.-+...+.     .+-++   ..+|+   .- +..|++.+++...-+...-
T Consensus        86 kle~Sl~r~yLV~~~q~nr~~K~~EFF~K~a~~lqnq-----~eWkD---WF~fPf~~~a~~tppf~~~F~ktw~e~~~~  157 (241)
T KOG1333|consen   86 KLETSLFRFYLVYTIQTNRNDKAQEFFAKQATELQNQ-----AEWKD---WFVLPFLPSAKDTPPFRKYFDKTWIEIYYV  157 (241)
T ss_pred             HHHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhcc-----hhhhh---heecccCCCCCCCccHHHHHHhhhhHhhhh
Confidence            3555666677777888999999999999765544432     23343   33333   22 3456777777654444333


Q ss_pred             HH
Q 026349          187 EV  188 (240)
Q Consensus       187 ~v  188 (240)
                      .+
T Consensus       158 sl  159 (241)
T KOG1333|consen  158 SL  159 (241)
T ss_pred             hH
Confidence            33

>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes

Probab=89.12  E-value=0.91  Score=32.42  Aligned_cols=31  Identities=23%  Similarity=0.283  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHhhCCCC
Q 026349           39 EDMNKLVMNFLVTEGYVDAAEKFRMESGTEP   69 (240)
Q Consensus        39 ~~l~~LI~~yL~~~Gy~~ta~~f~~e~~i~~   69 (240)
                      ..++.||.+||..+||.=|+..|..|+|...
T Consensus        19 ~Li~eLIrEyLef~~l~~TlsVf~~Es~~~~   49 (81)
T PF09398_consen   19 RLINELIREYLEFNNLDYTLSVFQPESGQPE   49 (81)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHT-TT
T ss_pred             HHHHHHHHHHHHHcCCccHHHHHhhccCCCC
Confidence            3578999999999999999999999999864

This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 1e-07
 Identities = 49/294 (16%), Positives = 93/294 (31%), Gaps = 99/294 (33%)

Query: 4   FWIVIRQLAEIEA---MSKKVITR-----EEWEKKLNDVKIRKEDMNKLVMNFLVTEGYV 55
           FW+ ++     E    M +K++ +            +++K+R   +   +   L ++ Y 
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 56  DA------------AEKFRMESGTEPDIDLAT-----ITDRMAVKKA-------VQCGNV 91
           +                F +         L T     +TD ++                 
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKI-----LLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 92  EDAIE---------KVNDLNPEILDTNPQLFFHLQQQRLI-ELIRNG------------- 128
            D ++         +  DL  E+L TNP     L    +I E IR+G             
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNP---RRLS---IIAESIRDGLATWDNWKHVNCD 353

Query: 129 KVEEALEFAQEELAPRGEENQSFLEEL----------ERTVALLAFEDVSNCPVGDLLDI 178
           K+   +E +   L P   E +   + L             ++L+ F+ + +      + +
Sbjct: 354 KLTTIIESSLNVLEP--AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV----MVV 407

Query: 179 SQRLKTASEVNAAILTSQSHEKDPK-----LPSLLKMLLWAQNQLDEKAAYPRI 227
             +L   S V          EK PK     +PS+   L       +E A +  I
Sbjct: 408 VNKLHKYSLV----------EKQPKESTISIPSIY--LELKVKLENEYALHRSI 449

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 8e-06
 Identities = 31/236 (13%), Positives = 82/236 (34%), Gaps = 49/236 (20%)

Query: 13  EIEAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGY-VDAAEKFRMESGTEPDI 71
           +++ M K ++++EE    ++ + + K+ ++  +  F        +  +KF +E     + 
Sbjct: 37  DVQDMPKSILSKEE----IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF-VEEVLRINY 91

Query: 72  DLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLF--FHLQQQRLIELIRNGK 129
               +   +  ++          IE+ + L       + Q+F  +++ + +    +R   
Sbjct: 92  KF--LMSPIKTEQRQPSMMTRMYIEQRDRLY-----NDNQVFAKYNVSRLQPYLKLRQ-- 142

Query: 130 VEEALEFAQEE---------------LAPRGEENQSFLEELERTVALLAFEDVSNCP-VG 173
              AL   +                 +A     +     +++  +  L   ++ NC    
Sbjct: 143 ---ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL---NLKNCNSPE 196

Query: 174 DLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDE---KAAYPR 226
            +L++ Q+L    + N    +  S   + KL      +   Q +L        Y  
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHS--SNIKLR-----IHSIQAELRRLLKSKPYEN 245

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 4e-05
 Identities = 45/342 (13%), Positives = 91/342 (26%), Gaps = 129/342 (37%)

Query: 3   LFWIVIRQLAEI----------------------EAMSKKVITR---EEWEKKLNDVKI- 36
           LFW ++ +  E+                      E     ++TR   E+ ++  ND ++ 
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 37  ------RKEDMNKL--------VMNFLVTEG----------------------------Y 54
                 R +   KL            ++ +G                            +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 55  VDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGN----VEDAIEKVNDL-----NPE- 104
           ++       E+  E    L    D     ++    N    +     ++  L         
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 105 --ILDT--NPQLF--FHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERT 158
             +L    N + +  F+L  + L+   R  +V + L  A        + +   L   E  
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILL-TTRFKQVTDFLS-AATTTHISLDHHSMTLTPDE-V 303

Query: 159 VALLAFEDVSNCPVGDL---------LDIS---------------------QRLKTASEV 188
            +LL      +C   DL           +S                      +L T  E 
Sbjct: 304 KSLLL--KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 189 NAAILTSQSH----------EKDPKLPSLLKMLLWAQNQLDE 220
           +  +L    +               +P++L  L+W      +
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	95.47
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	95.22
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	86.58
2nxp_A	156	Transcription initiation factor TFIID subunit 5; t	85.37
2d68_A	82	FOP, FGFR1OP; alpha helical bundle, dimer, cell cy	81.78

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=95.47  E-value=0.014  Score=41.51  Aligned_cols=34  Identities=29%  Similarity=0.491  Sum_probs=32.0

Q ss_pred             CCCHHHHHHHHHHHHHHhCHHHHHHHHHHhhCCC
Q 026349           35 KIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE   68 (240)
Q Consensus        35 ~~~~~~l~~LI~~yL~~~Gy~~ta~~f~~e~~i~   68 (240)
                      +++.+++|.||..||...||..||-+|.+|+++.
T Consensus         2 sitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~   35 (90)
T 2xtc_A            2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS   35 (90)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence            5789999999999999999999999999999875

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=95.22  E-value=0.019  Score=40.53  Aligned_cols=33  Identities=21%  Similarity=0.582  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHhhCCCCC
Q 026349           38 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPD   70 (240)
Q Consensus        38 ~~~l~~LI~~yL~~~Gy~~ta~~f~~e~~i~~~   70 (240)
                      +++|++-|++||..+||.+++.+|.+|.++...
T Consensus        10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~   42 (88)
T 1uuj_A           10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMN   42 (88)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC
Confidence            468999999999999999999999999988653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=86.58  E-value=0.13  Score=45.24  Aligned_cols=54  Identities=15%  Similarity=0.282  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHH
Q 026349           38 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEK   97 (240)
Q Consensus        38 ~~~l~~LI~~yL~~~Gy~~ta~~f~~e~~i~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~   97 (240)
                      +++++++|++||..+||.+++.+|.+|.+++....      .......+.+++|+..+..
T Consensus         8 ~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~~------~~~~~~~~~~~~w~~~~~l   61 (410)
T 1vyh_C            8 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEE------LDKKYAGLLEKKWTSVIRL   61 (410)
T ss_dssp             ------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCcc------hhhhhhchhhhhhhheeeH
Confidence            57899999999999999999999999998754221      1223445667777766654

>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1

Probab=85.37  E-value=1  Score=34.96  Aligned_cols=66  Identities=18%  Similarity=0.086  Sum_probs=46.1

Q ss_pred             HHHHHHhhChhhhhccccchhhhHHHHHHHHHhcCChHHHHHHHHHhcCcccCCchHHHHHHHHHhhhh
Q 026349           94 AIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALL  162 (240)
Q Consensus        94 Ai~~i~~~~p~l~~~~s~l~F~L~~q~fIEli~~~~~~~Ai~y~r~~l~p~~~~~~~~~~~l~~~~~lL  162 (240)
                      -..|++..-......-+.+.|=+-++-|++||.+|...+|-.|..++-.-+...+   .++++++.++.
T Consensus        34 L~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~---~~~i~~L~~i~   99 (156)
T 2nxp_A           34 LKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYY---QDDLRVLSSLT   99 (156)
T ss_dssp             HHHHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGG---HHHHHHHHTCC
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHH---HHHHHHHhcCC
Confidence            3567765432222223678999999999999999999999999998766664333   45666554433

>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}

Probab=81.78  E-value=1.6  Score=30.21  Aligned_cols=31  Identities=23%  Similarity=0.116  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHhhCCCC
Q 026349           39 EDMNKLVMNFLVTEGYVDAAEKFRMESGTEP   69 (240)
Q Consensus        39 ~~l~~LI~~yL~~~Gy~~ta~~f~~e~~i~~   69 (240)
                      ..++.||.+||...||.=|...|..|+|.+.
T Consensus        19 rLi~~LVrEyLef~~l~~TlsVf~pEs~l~~   49 (82)
T 2d68_A           19 RLVASLVAEFLQFFNLDFTLAVFQPETSTLQ   49 (82)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHHHcCCcchHHhhhhccCCCC
Confidence            4588999999999999999999999999963

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	240
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	95.61
d2nxpa1	149	TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId	87.23
d2j4ba1	131	TAF5 subunit of TFIID {Encephalitozoon cuniculi [T	80.1

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.61  E-value=0.0059  Score=40.34  Aligned_cols=32  Identities=22%  Similarity=0.578  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHhhCCCC
Q 026349           38 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEP   69 (240)
Q Consensus        38 ~~~l~~LI~~yL~~~Gy~~ta~~f~~e~~i~~   69 (240)
                      +.+||+-|++||..+||.+++.+|.+|+++..
T Consensus         7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~   38 (76)
T d1uuja_           7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDM   38 (76)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCC
Confidence            57899999999999999999999999998753

>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.23  E-value=0.34  Score=35.60  Aligned_cols=65  Identities=18%  Similarity=0.102  Sum_probs=45.5

Q ss_pred             HHHHhhChhhhhccccchhhhHHHHHHHHHhcCChHHHHHHHHHhcCcccCCchHHHHHHHHHhhhhh
Q 026349           96 EKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLA  163 (240)
Q Consensus        96 ~~i~~~~p~l~~~~s~l~F~L~~q~fIEli~~~~~~~Ai~y~r~~l~p~~~~~~~~~~~l~~~~~lL~  163 (240)
                      .|+...-..-...-..+.|=+...-|++||.+|+..+|..|..+.-.-+...+   ..+++++.++..
T Consensus        29 ~wv~~sld~yK~EL~~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~---~~~I~~L~~i~~   93 (149)
T d2nxpa1          29 HFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYY---QDDLRVLSSLTK   93 (149)
T ss_dssp             HHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGG---HHHHHHHHTCCS
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHH---HHHHHHHHcCCC
Confidence            46555433332233679999999999999999999999999998765554333   556776555433

>d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Encephalitozoon cuniculi [TaxId: 6035]

Probab=80.10  E-value=1.3  Score=31.45  Aligned_cols=62  Identities=19%  Similarity=0.187  Sum_probs=42.8

Q ss_pred             HHHHHhhChhhhhccccchhhhHHHHHHHHHhcCChHHHHHHHHHhcCcccCCchHHHHHHHHHhh
Q 026349           95 IEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVA  160 (240)
Q Consensus        95 i~~i~~~~p~l~~~~s~l~F~L~~q~fIEli~~~~~~~Ai~y~r~~l~p~~~~~~~~~~~l~~~~~  160 (240)
                      -.|++..-..-...-..+.|=+...-|++||.+|...+|..|.++.-..+. .+   .++++++.+
T Consensus        10 r~wv~~sld~yK~EL~~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~d~~-~~---~~~i~~L~~   71 (131)
T d2j4ba1          10 KTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY-NK---SEEIKQFES   71 (131)
T ss_dssp             HHHHHHSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---C---HHHHHHHTT
T ss_pred             HHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHccchHH-HH---HHHHHHHHc
Confidence            356665433333233679999999999999999999999999998654442 22   456666555