Citrus Sinensis ID: 026414

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWSY
Secondary Structure (PSIPRED)
ccccccEEEEEHHHHcccccccEEEEEEEccccccEEEEEEEEEEcccccHHHHccccccccccEEccccccEEEEEEcccccccccccEEEEcccccccccccccccccccccccccccccccccccccccEEEccEEEEEEEccccccccEEEEccEEEEccccccccEEEEEccccccccHHEEEEcccccccEEEEEcccHHHHHHHHHHHHcccccEEEEccccccHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEEcccccccEEEEEEEccccccEEEEEEEEEEEcHHHHHHHHcccccccccEccccEEEEEEEEEcccccccccccEEEEcccccccccHHHHccccccccccHHHHHcccccccccccEEEccEEEEccccccccEcEEEEEHHHEEEccccccHHHHHHHHcHHHHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHcc
Coil and Loop (DISEMBL)
MSTEGQVITCKAavawepnkplviedvqvappqagEVRIKILFTALChtdaytwsgkdpeglfpcilgheAAGIVesvgegvtevqpgdhvipcyqaecreckfcksgktnlcgkvrgatgagvmmndrksrfsingkpiyhfmgtstfsQYTVVHdvsvakidpqapldkvcllgcgvptglgavwntakvepgsivAVFGLGTVGLAVAEGAKaagasrvigididpkkfdrefwsy
Flexible Loop (DISEMBL)
mstegqvitckaavawepnkpLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFcksgktnlcgkvrgatgagvmmndRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAkaagasrvigididpkkfdrefwsy
Low Complexity Region (SEG)
MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVglavaegakaagaSRVIGIDIDPKKFDREFWSY
Disordered region (IsUnstruct)
******VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD******
Disordered Region (DISOPRED)
**TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWSY
Disordered Region (DISEMBL)
MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWSY
Disordered Region (DISPRO)
****GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWSY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	239	2.2.26 [Sep-21-2011]
A2XAZ3	381	Alcohol dehydrogenase cla	N/A	no	0.970	0.608	0.935	1e-126
Q0DWH1	381	Alcohol dehydrogenase cla	yes	no	0.970	0.608	0.931	1e-126
Q96533	379	Alcohol dehydrogenase cla	yes	no	0.974	0.614	0.927	1e-126
P93629	381	Alcohol dehydrogenase cla	N/A	no	0.966	0.606	0.939	1e-126
P80572	378	Alcohol dehydrogenase cla	N/A	no	0.970	0.613	0.887	1e-118
P79896	376	Alcohol dehydrogenase cla	N/A	no	0.983	0.625	0.668	3e-88
P12711	374	Alcohol dehydrogenase cla	yes	no	0.953	0.609	0.711	2e-87
P00333	379	Alcohol dehydrogenase 1 O	N/A	no	0.987	0.622	0.659	3e-87
P81600	375	Alcohol dehydrogenase cla	N/A	no	0.970	0.618	0.669	3e-87
P14674	380	Alcohol dehydrogenase 2 O	N/A	no	0.974	0.613	0.656	4e-87

>sp|A2XAZ3|ADHX_ORYSI Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. indica GN=ADHIII PE=3 SV=1

 Score =  452 bits (1162), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/232 (93%), Positives = 224/232 (96%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST+GQVITCKAAVAWE NKP+ IEDVQVAPPQAGEVR+KILFTALCHTD YTWSGKDPEG
Sbjct: 4   STQGQVITCKAAVAWEANKPMTIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDPEG 63

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR ATG
Sbjct: 64  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATG 123

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI+PQAPLDKVCLLGCGV T
Sbjct: 124 VGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVST 183

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           GLGAVWNTAKVE GSIVA+FGLGTVGLAVAEGAK+AGASR+IGIDID KKFD
Sbjct: 184 GLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFD 235

Oryza sativa subsp. indica (taxid: 39946)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 8EC: 4

>sp|Q0DWH1|ADHX_ORYSJ Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. japonica GN=Os02g0815500 PE=2 SV=1

 Score =  451 bits (1159), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/232 (93%), Positives = 224/232 (96%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST+GQVITCKAAVAWE N+P+ IEDVQVAPPQAGEVR+KILFTALCHTD YTWSGKDPEG
Sbjct: 4   STQGQVITCKAAVAWEANRPMTIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDPEG 63

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR ATG
Sbjct: 64  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATG 123

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI+PQAPLDKVCLLGCGV T
Sbjct: 124 VGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVST 183

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           GLGAVWNTAKVE GSIVA+FGLGTVGLAVAEGAK+AGASR+IGIDID KKFD
Sbjct: 184 GLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFD 235

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|Q96533|ADHX_ARATH Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2

 Score =  450 bits (1158), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/233 (92%), Positives = 226/233 (96%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M+T+GQVITCKAAVA+EPNKPLVIEDVQVAPPQAGEVRIKIL+TALCHTDAYTWSGKDPE
Sbjct: 1   MATQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPE 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
           GLFPCILGHEAAGIVESVGEGVTEVQ GDHVIPCYQAECRECKFCKSGKTNLCGKVR AT
Sbjct: 61  GLFPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSAT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
           G G+MMNDRKSRFS+NGKPIYHFMGTSTFSQYTVVHDVSVAKIDP APLDKVCLLGCGVP
Sbjct: 121 GVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVP 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           TGLGAVWNTAKVEPGS VA+FGLGTVGLAVAEGAK AGASR+IGIDID KK++
Sbjct: 181 TGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYE 233

Plays a central role in formaldehyde detoxification.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P93629|ADHX_MAIZE Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH PE=2 SV=1

 Score =  449 bits (1156), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/231 (93%), Positives = 225/231 (97%)

Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
           T+GQVITCKAAVA+EPNKPLVIEDVQVAPPQAGEVR+KILFTALCHTD YTWSGKDPEGL
Sbjct: 5   TQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDPEGL 64

Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
           FPCILGHEAAGIVESVGEGVT+VQPGDHVIPCYQAEC+ECKFCKSGKTNLCGKVR ATG 
Sbjct: 65  FPCILGHEAAGIVESVGEGVTDVQPGDHVIPCYQAECKECKFCKSGKTNLCGKVRSATGV 124

Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG 182
           GVMMND KSRFS+NGKPIYHFMGTSTFSQYTVVHDVSVAKI+PQAPLDKVCLLGCGVPTG
Sbjct: 125 GVMMNDMKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVPTG 184

Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           LGAVWNTAKVE GS+VAVFGLGTVGLAVAEGAKAAGASRVIGIDID KKFD
Sbjct: 185 LGAVWNTAKVESGSVVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDNKKFD 235

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P80572|ADHX_PEA Alcohol dehydrogenase class-3 OS=Pisum sativum PE=1 SV=1

 Score =  425 bits (1093), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/232 (88%), Positives = 217/232 (93%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           +T+GQVITCKAAVAWEPNKPL IEDV+VAPPQA EVRI+ILFTALCHTDAYT  GKDPEG
Sbjct: 1   ATQGQVITCKAAVAWEPNKPLTIEDVEVAPPQANEVRIQILFTALCHTDAYTLGGKDPEG 60

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           LFPCILGHEAAGIVESVGEGVT+V+PGDHVIP YQAEC ECKFCKS KTNLCGKVR ATG
Sbjct: 61  LFPCILGHEAAGIVESVGEGVTDVKPGDHVIPSYQAECGECKFCKSPKTNLCGKVRAATG 120

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            GVMM DRKSRFS+ GKPIYHFMGTSTFSQYTVVHDVSVAKI P APLDKVCLLGCGVPT
Sbjct: 121 VGVMMADRKSRFSVKGKPIYHFMGTSTFSQYTVVHDVSVAKIHPDAPLDKVCLLGCGVPT 180

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           GLGAVWNTAKVEPGSIVA+FGLGTVGLAVAEGAK+AGASR+IGIDID  K+D
Sbjct: 181 GLGAVWNTAKVEPGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSNKYD 232

Class-III ADH is remarkably ineffective in oxidizing ethanol, but it readily catalyzes the oxidation of long-chain primary alcohols and the oxidation of S-(hydroxymethyl) glutathione.

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P79896|ADHX_SPAAU Alcohol dehydrogenase class-3 OS=Sparus aurata PE=2 SV=1

 Score =  324 bits (831), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 159/238 (66%), Positives = 189/238 (79%), Gaps = 3/238 (1%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M T G+VI CKAAVAWEP KPL IE+V+VAPP A EVRIK+  T +CHTDAYT SG DPE
Sbjct: 1   METAGKVIKCKAAVAWEPGKPLSIEEVEVAPPNAHEVRIKLFATGVCHTDAYTLSGSDPE 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
           GLFP ILGHE AG VESVGEGVT+ +PGD VIP Y  +C ECKFCK+ KTNLC K+R   
Sbjct: 61  GLFPVILGHEGAGTVESVGEGVTKFKPGDTVIPLYVPQCGECKFCKNPKTNLCQKIRITQ 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
           G G ++ D+ SRF+  GK ++HFMGTSTFS+YTVV D+S+AK++ +AP+DKVCLLGCG+ 
Sbjct: 121 GQG-LLPDKTSRFTCKGKQVFHFMGTSTFSEYTVVADISLAKVNEKAPMDKVCLLGCGIS 179

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD--REF 236
           TG GA  NTAKVEPGS  AVFGLG VGLAV  G K AGA+R+IGID++P KF+  +EF
Sbjct: 180 TGYGAALNTAKVEPGSTCAVFGLGAVGLAVIMGCKVAGATRIIGIDLNPAKFETAKEF 237

Class-III ADH is remarkably ineffective in oxidizing ethanol, but it readily catalyzes the oxidation of long-chain primary alcohols and the oxidation of S-(hydroxymethyl) glutathione.

Sparus aurata (taxid: 8175)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P12711|ADHX_RAT Alcohol dehydrogenase class-3 OS=Rattus norvegicus GN=Adh5 PE=1 SV=2

 Score =  322 bits (824), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 163/229 (71%), Positives = 182/229 (79%), Gaps = 1/229 (0%)

Query: 6   QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
           QVI CKAAVAWE  KPL IE+++VAPPQA EVRIKI+ TA+CHTDAYT SG DPEG FP 
Sbjct: 4   QVIRCKAAVAWEAGKPLSIEEIEVAPPQAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 63

Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
           ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +
Sbjct: 64  ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 122

Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
           M D  SRF+  GKPI HFMGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct: 123 MPDGTSRFTCKGKPILHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGA 182

Query: 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
             NTAKVEPGS  AVFGLG VGLAV  G K AGASR+IGIDI+  KF +
Sbjct: 183 AVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDINKDKFAK 231

Class-III ADH is remarkably ineffective in oxidizing ethanol, but it readily catalyzes the oxidation of long-chain primary alcohols and the oxidation of S-(hydroxymethyl) glutathione.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P00333|ADH1_MAIZE Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 SV=1

 Score =  321 bits (823), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 157/238 (65%), Positives = 187/238 (78%), Gaps = 2/238 (0%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M+T G+VI CKAAVAWE  KPL IE+V+VAPPQA EVR+KILFT+LCHTD Y W  K   
Sbjct: 1   MATAGKVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILFTSLCHTDVYFWEAKGQT 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
            +FP I GHEA GI+ESVGEGVT+V PGDHV+P +  EC+EC  CKS ++N+C  +R  T
Sbjct: 61  PVFPRIFGHEAGGIIESVGEGVTDVAPGDHVLPVFTGECKECAHCKSAESNMCDLLRINT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
             GVM+ D KSRFSINGKPIYHF+GTSTFS+YTV+H   VAKI+PQAPLDKVC+L CG  
Sbjct: 121 DRGVMIADGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPQAPLDKVCVLSCGYS 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD--REF 236
           TGLGA  N AK   GS VAVFGLG VGLA AEGA+ AGASR+IG+D++P +F+  R+F
Sbjct: 181 TGLGASINVAKPPKGSTVAVFGLGAVGLAAAEGARIAGASRIIGVDLNPSRFEEARKF 238

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P81600|ADHH_GADMO Alcohol dehydrogenase class-3 chain H OS=Gadus morhua PE=1 SV=1

 Score =  321 bits (822), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 156/233 (66%), Positives = 186/233 (79%), Gaps = 1/233 (0%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           +T GQVI CKAAVAWE  KPL +E+V+VAPP+AGEVRIK++ T +CHTDAYT SG DPEG
Sbjct: 1   ATAGQVIKCKAAVAWEAGKPLSLEEVEVAPPRAGEVRIKVVATGVCHTDAYTLSGSDPEG 60

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
            FP ILGHE AG+VESVGEGVT+ + GD VIP Y  +C ECKFCK+ KTNLC K+R   G
Sbjct: 61  AFPVILGHEGAGLVESVGEGVTKFKAGDTVIPLYVPQCGECKFCKNPKTNLCQKIRVTQG 120

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G +M D  SRF+  GK ++HFMGTSTFS+YTVV D+S+A +DP+APLDKVCLLGCG+ T
Sbjct: 121 RG-LMPDNTSRFTCKGKQLFHFMGTSTFSEYTVVADISLANVDPKAPLDKVCLLGCGIST 179

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           G GA  NTAKVEPGS  AVFGLG VGLA   G K AGA+R+IG+DI+P+KF +
Sbjct: 180 GYGAALNTAKVEPGSTCAVFGLGAVGLAAIMGCKVAGATRIIGVDINPEKFGK 232

Class-III ADH is remarkably ineffective in oxidizing ethanol, but it readily catalyzes the oxidation of long-chain primary alcohols and the oxidation of S-(hydroxymethyl) glutathione.

Gadus morhua (taxid: 8049)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P14674|ADH2_SOLTU Alcohol dehydrogenase 2 OS=Solanum tuberosum GN=ADH2 PE=2 SV=1

 Score =  320 bits (821), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 153/233 (65%), Positives = 185/233 (79%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           +T GQVI CKAAVAWE  KPLV+E+V VAPPQ  EVR+KIL+T+LCHTD Y W  K    
Sbjct: 3   TTTGQVIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKGQNP 62

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           +FP ILGHEAAGIVESVGEGVTE+ PGDHV+P +  EC++C  CKS ++N+C  +R  T 
Sbjct: 63  VFPRILGHEAAGIVESVGEGVTELAPGDHVLPVFTGECKDCAHCKSEESNMCSLLRINTD 122

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            GVM+ND +SRFSINGKPIYHF+GTSTFS+YTVVH   VAKI+P APLDKVC+L CG+ T
Sbjct: 123 RGVMINDGQSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSCGIST 182

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           GLGA  N AK   GS VA+FGLG VGLA AEGA+ AGASR+IG+D++  +F++
Sbjct: 183 GLGATLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAGASRIIGVDLNASRFEQ 235

Solanum tuberosum (taxid: 4113)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
353703786	379	alcohol dehydrogenase class III [Solanum	0.979	0.617	0.948	1e-128
433286663	396	Chain A, Crystal Structure Of S-nitrosog	0.974	0.588	0.948	1e-128
449487339	349	PREDICTED: alcohol dehydrogenase class-3	0.974	0.667	0.944	1e-126
449445644	379	PREDICTED: alcohol dehydrogenase class-3	0.974	0.614	0.944	1e-126
255585914	379	alcohol dehydrogenase, putative [Ricinus	0.979	0.617	0.935	1e-126
429840534	378	alcohol dehydrogenase 2 [Diospyros kaki]	0.974	0.616	0.939	1e-125
224065517	379	glutathione-dependent formaldehyde dehyd	0.979	0.617	0.931	1e-125
82400134	379	alcohol dehydrogenase class III-like pro	0.979	0.617	0.927	1e-125
238069187	374	S-nitrosoglutathione reductase [Brassica	0.974	0.622	0.931	1e-125
148886774	381	RecName: Full=Alcohol dehydrogenase clas	0.970	0.608	0.935	1e-125

>gi|353703786|ref|NP_001238796.1| alcohol dehydrogenase class III [Solanum lycopersicum] gi|283825505|gb|ADB43258.1| alcohol dehydrogenase class III [Solanum lycopersicum] gi|322719690|gb|ADX07743.1| alcohol dehydrogenase class III [Solanum habrochaites] gi|322719692|gb|ADX07744.1| alcohol dehydrogenase class III [Solanum chmielewskii]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 222/234 (94%), Positives = 230/234 (98%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M+T+GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVR+K+L+TALCHTDAYTWSGKDPE
Sbjct: 1   MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKVLYTALCHTDAYTWSGKDPE 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
           GLFPC+LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR AT
Sbjct: 61  GLFPCVLGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAAT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
           G GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP APL+KVCLLGCGVP
Sbjct: 121 GVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLEKVCLLGCGVP 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASR+IGIDID KKFDR
Sbjct: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDR 234

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|433286663|pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ gi|433286664|pdb|4DL9|B Chain B, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ gi|433286665|pdb|4DLA|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase Apoenzyme From Tomato (solanum Lycopersicum) gi|433286666|pdb|4DLA|B Chain B, Crystal Structure Of S-nitrosoglutathione Reductase Apoenzyme From Tomato (solanum Lycopersicum) gi|433286667|pdb|4DLB|A Chain A, Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) Crystallized In Presence Of Nadh And Glutathione gi|433286668|pdb|4DLB|B Chain B, Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) Crystallized In Presence Of Nadh And Glutathione

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 221/233 (94%), Positives = 229/233 (98%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           +T+GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVR+K+L+TALCHTDAYTWSGKDPEG
Sbjct: 19  ATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKVLYTALCHTDAYTWSGKDPEG 78

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           LFPC+LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR ATG
Sbjct: 79  LFPCVLGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATG 138

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP APL+KVCLLGCGVPT
Sbjct: 139 VGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLEKVCLLGCGVPT 198

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASR+IGIDID KKFDR
Sbjct: 199 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDR 251

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487339|ref|XP_004157577.1| PREDICTED: alcohol dehydrogenase class-3-like [Cucumis sativus]

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/233 (94%), Positives = 229/233 (98%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M+T+GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVR+KIL+TALCHTDAYTWSGKDPE
Sbjct: 1   MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGKDPE 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
           GLFPCILGHEAAGIVESVGEGVT+VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT
Sbjct: 61  GLFPCILGHEAAGIVESVGEGVTDVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
           G GVMM+DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP APLDKVCLLGCGVP
Sbjct: 121 GVGVMMSDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVP 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           TGLGAVWNTAKVEPGS VA+FGLGTVGLAVAEGAKAAGASR+IGIDID KKF+
Sbjct: 181 TGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKAAGASRIIGIDIDNKKFE 233

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445644|ref|XP_004140582.1| PREDICTED: alcohol dehydrogenase class-3-like [Cucumis sativus]

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/233 (94%), Positives = 229/233 (98%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M+T+GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVR+KIL+TALCHTDAYTWSGKDPE
Sbjct: 1   MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGKDPE 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
           GLFPCILGHEAAGIVESVGEGVT+VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT
Sbjct: 61  GLFPCILGHEAAGIVESVGEGVTDVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
           G GVMM+DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP APLDKVCLLGCGVP
Sbjct: 121 GVGVMMSDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVP 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           TGLGAVWNTAKVEPGS VA+FGLGTVGLAVAEGAKAAGASR+IGIDID KKF+
Sbjct: 181 TGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKAAGASRIIGIDIDNKKFE 233

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585914|ref|XP_002533630.1| alcohol dehydrogenase, putative [Ricinus communis] gi|223526488|gb|EEF28759.1| alcohol dehydrogenase, putative [Ricinus communis]

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/234 (93%), Positives = 229/234 (97%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M+T+GQVI CKAAVA+EPNKPLVIEDVQVAPPQAGEVR++ILFTALCHTDAYTWSGKDPE
Sbjct: 1   MATQGQVIICKAAVAYEPNKPLVIEDVQVAPPQAGEVRVQILFTALCHTDAYTWSGKDPE 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
           GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECR+CKFCKSGKTNLCGKVR AT
Sbjct: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRDCKFCKSGKTNLCGKVRAAT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
           G GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP+APL+KVCLLGCGVP
Sbjct: 121 GVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPKAPLEKVCLLGCGVP 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           TGLGAVWNTAKVE GSIVAVFGLGTVGLAVAEGAKAAGASR+IGIDID KK+DR
Sbjct: 181 TGLGAVWNTAKVEAGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKYDR 234

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|429840534|gb|AGA15794.1| alcohol dehydrogenase 2 [Diospyros kaki]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/233 (93%), Positives = 226/233 (96%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M+T+GQVITCKAAVAWEPNKPL IEDVQVAPPQAGEVRI+ILFTALCHTDAYTWSGKDPE
Sbjct: 1   MATQGQVITCKAAVAWEPNKPLAIEDVQVAPPQAGEVRIQILFTALCHTDAYTWSGKDPE 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
           GLFPCILGHEAAGIVESVGEGVTEV PGDHVIPCYQAECRECKFCKSGKTNLCGKVR AT
Sbjct: 61  GLFPCILGHEAAGIVESVGEGVTEVHPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAAT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
           G GVMMNDRKSRFSING PIYHFMGTSTFSQYTVVHDVSVAKIDP APL+KVCLLGCGVP
Sbjct: 121 GVGVMMNDRKSRFSINGTPIYHFMGTSTFSQYTVVHDVSVAKIDPIAPLEKVCLLGCGVP 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           TGLGAVWNTAKVEPGSIVA+FGLGTVGLAVAEGAK+AGASR+IGIDID KKFD
Sbjct: 181 TGLGAVWNTAKVEPGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFD 233

Source: Diospyros kaki

Species: Diospyros kaki

Genus: Diospyros

Family: Ebenaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065517|ref|XP_002301836.1| glutathione-dependent formaldehyde dehydrogenase [Populus trichocarpa] gi|222843562|gb|EEE81109.1| glutathione-dependent formaldehyde dehydrogenase [Populus trichocarpa]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/234 (93%), Positives = 227/234 (97%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M+T+GQVITC+AAVAWE NKPLVIE+VQVAPPQAGEVR+KILF ALCHTDAYTWSGKDPE
Sbjct: 1   MATQGQVITCRAAVAWEANKPLVIEEVQVAPPQAGEVRVKILFAALCHTDAYTWSGKDPE 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
           GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR AT
Sbjct: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRTAT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
           G GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP+APL+KVCLLGCGVP
Sbjct: 121 GVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPKAPLEKVCLLGCGVP 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           TGLGAVWNTAKVE GSIVA+FGLGTVGLAVAEGAK AGASR+IGIDID KKFDR
Sbjct: 181 TGLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKFDR 234

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|82400134|gb|ABB72806.1| alcohol dehydrogenase class III-like protein [Solanum tuberosum]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/234 (92%), Positives = 227/234 (97%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M+T+GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVR+K+L+TALCHTDAYTWSGKDPE
Sbjct: 1   MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKVLYTALCHTDAYTWSGKDPE 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
           GLFP +LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR AT
Sbjct: 61  GLFPSVLGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAAT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
           G GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD SVA+IDP APL+KVCLLGC VP
Sbjct: 121 GVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDGSVARIDPAAPLEKVCLLGCWVP 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           TGLGAVWNTAKVEPGSIVA+FGLGTVGLAVAEGAKAAGASR+IGIDID KKFDR
Sbjct: 181 TGLGAVWNTAKVEPGSIVAIFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDR 234

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238069187|gb|ACR40091.1| S-nitrosoglutathione reductase [Brassica juncea]

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/233 (93%), Positives = 228/233 (97%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M+T+GQVITCKAAVA+EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE
Sbjct: 1   MATQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
           GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR AT
Sbjct: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRSAT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
           G GVMM+DRKSRFS+NGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL+KVCLLGCGVP
Sbjct: 121 GVGVMMSDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLEKVCLLGCGVP 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           TGLGAVWNTAKVEPGS VA+FGLGTVGLAVAEGAK AGA+R+IGIDID KK++
Sbjct: 181 TGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGATRIIGIDIDSKKYE 233

Source: Brassica juncea

Species: Brassica juncea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148886774|sp|A2XAZ3.1|ADHX_ORYSI RecName: Full=Alcohol dehydrogenase class-3; AltName: Full=Alcohol dehydrogenase class-III; AltName: Full=Glutathione-dependent formaldehyde dehydrogenase; Short=FALDH; Short=FDH; Short=GSH-FDH; AltName: Full=S-(hydroxymethyl)glutathione dehydrogenase gi|125541608|gb|EAY88003.1| hypothetical protein OsI_09425 [Oryza sativa Indica Group]

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/232 (93%), Positives = 224/232 (96%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST+GQVITCKAAVAWE NKP+ IEDVQVAPPQAGEVR+KILFTALCHTD YTWSGKDPEG
Sbjct: 4   STQGQVITCKAAVAWEANKPMTIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDPEG 63

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR ATG
Sbjct: 64  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATG 123

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI+PQAPLDKVCLLGCGV T
Sbjct: 124 VGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVST 183

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           GLGAVWNTAKVE GSIVA+FGLGTVGLAVAEGAK+AGASR+IGIDID KKFD
Sbjct: 184 GLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFD 235

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
RGD|2292706	374	Adh5 "alcohol dehydrogenase 5	0.945	0.604	0.678	6.2e-78
UNIPROTKB|P12711	374	Adh5 "Alcohol dehydrogenase cl	0.945	0.604	0.678	6.2e-78
ZFIN|ZDB-GENE-011003-1	376	adh5 "alcohol dehydrogenase 5"	0.970	0.617	0.635	1.6e-77
MGI|MGI:87929	374	Adh5 "alcohol dehydrogenase 5	0.945	0.604	0.669	3.4e-77
DICTYBASE|DDB_G0281865	379	adh5 "alcohol dehydrogenase, c	0.966	0.609	0.637	4.3e-77
UNIPROTKB|F1NI89	370	ADH5 "Uncharacterized protein"	0.941	0.608	0.672	4.3e-77
UNIPROTKB|F1NKS5	374	ADH5 "Uncharacterized protein"	0.941	0.601	0.672	4.3e-77
UNIPROTKB|F1NKS6	362	ADH5 "Uncharacterized protein"	0.941	0.621	0.672	4.3e-77
TAIR|locus:2025237	379	ADH1 "alcohol dehydrogenase 1"	0.987	0.622	0.613	7.1e-77
UNIPROTKB|F1PLM5	376	F1PLM5 "Uncharacterized protei	0.953	0.606	0.663	9e-77

RGD|2292706 Adh5 "alcohol dehydrogenase 5 (class III), chi polypeptide" [Rattus norvegicus (taxid:10116)]

 Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
 Identities = 154/227 (67%), Positives = 172/227 (75%)

Query:     6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
             QVI CKAAVAWE  KPL IE+++VAPPQA EVRIKI+ TA+CHTDAYT SG DPEG FP 
Sbjct:     4 QVIRCKAAVAWEAGKPLSIEEIEVAPPQAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 63

Query:    66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
             ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +
Sbjct:    64 ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 122

Query:   126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
             M D  SRF+  GKPI HFMGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct:   123 MPDGTSRFTCKGKPILHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGA 182

Query:   186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKF 232
               NTAKVEPGS  AVFGLG V             SR+IGIDI+  KF
Sbjct:   183 AVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDINKDKF 229

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001523 "retinoid metabolic process" evidence=IEA;ISO

GO:0003016 "respiratory system process" evidence=IEA;ISO

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=IEA;ISO;IDA

GO:0005504 "fatty acid binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006068 "ethanol catabolic process" evidence=IDA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0007568 "aging" evidence=IEP

GO:0008270 "zinc ion binding" evidence=IEA;ISO

GO:0018119 "peptidyl-cysteine S-nitrosylation" evidence=IEA;ISO

GO:0018467 "formaldehyde dehydrogenase activity" evidence=IEA;ISO

GO:0032496 "response to lipopolysaccharide" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0045777 "positive regulation of blood pressure" evidence=IEA;ISO

GO:0046294 "formaldehyde catabolic process" evidence=IEA;ISO

GO:0051409 "response to nitrosative stress" evidence=IEA;ISO

GO:0051775 "response to redox state" evidence=IEA;ISO

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA;ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|P12711 Adh5 "Alcohol dehydrogenase class-3" [Rattus norvegicus (taxid:10116)]

 Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
 Identities = 154/227 (67%), Positives = 172/227 (75%)

Query:     6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
             QVI CKAAVAWE  KPL IE+++VAPPQA EVRIKI+ TA+CHTDAYT SG DPEG FP 
Sbjct:     4 QVIRCKAAVAWEAGKPLSIEEIEVAPPQAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 63

Query:    66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
             ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +
Sbjct:    64 ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 122

Query:   126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
             M D  SRF+  GKPI HFMGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct:   123 MPDGTSRFTCKGKPILHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGA 182

Query:   186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKF 232
               NTAKVEPGS  AVFGLG V             SR+IGIDI+  KF
Sbjct:   183 AVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDINKDKF 229

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001523 "retinoid metabolic process" evidence=IEA

GO:0003016 "respiratory system process" evidence=IEA

GO:0005504 "fatty acid binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0018119 "peptidyl-cysteine S-nitrosylation" evidence=IEA

GO:0018467 "formaldehyde dehydrogenase activity" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0045777 "positive regulation of blood pressure" evidence=IEA

GO:0046294 "formaldehyde catabolic process" evidence=IEA

GO:0051409 "response to nitrosative stress" evidence=IEA

GO:0051775 "response to redox state" evidence=IEA

ZFIN|ZDB-GENE-011003-1 adh5 "alcohol dehydrogenase 5" [Danio rerio (taxid:7955)]

 Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
 Identities = 148/233 (63%), Positives = 174/233 (74%)

Query:     1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
             M T G+VI CKAAVAWE  KPL IE+V+VAPP+A EVR+KI  T +CHTDAYT SG DPE
Sbjct:     1 MDTTGKVIKCKAAVAWEAGKPLTIEEVEVAPPKAHEVRVKIHATGVCHTDAYTLSGSDPE 60

Query:    61 GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
             GLFP ILGHE AG VESVGEGVT+ +PGD VIP Y  +C ECKFCK+ KTNLC K+R   
Sbjct:    61 GLFPVILGHEGAGTVESVGEGVTKFKPGDTVIPLYVPQCGECKFCKNPKTNLCQKIRVTQ 120

Query:   121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
             G G +M D  SRF+  GK ++HFMGTSTFS+YTVV ++S+AK+D  APLDKVCLLGCG+ 
Sbjct:   121 GQG-LMPDNTSRFTCKGKQLFHFMGTSTFSEYTVVAEISLAKVDEHAPLDKVCLLGCGIS 179

Query:   181 TGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFD 233
             TG GA  NTAKVE GS  AVFGLG V             +R+IGID++P KF+
Sbjct:   180 TGYGAAINTAKVEAGSTCAVFGLGAVGLAVVMGCKSAGATRIIGIDVNPDKFE 232

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:87929 Adh5 "alcohol dehydrogenase 5 (class III), chi polypeptide" [Mus musculus (taxid:10090)]

 Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
 Identities = 152/227 (66%), Positives = 172/227 (75%)

Query:     6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
             QVI CKAAVAWE  KPL IE+++VAPP+A EVRIKIL TA+CHTDAYT SG DPEG FP 
Sbjct:     4 QVIRCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKILATAVCHTDAYTLSGADPEGCFPV 63

Query:    66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
             ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +
Sbjct:    64 ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 122

Query:   126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
             M D  SRF+  GK ++HFMGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct:   123 MPDGTSRFTCKGKSVFHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGA 182

Query:   186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKF 232
               NTAKVEPGS  AVFGLG V             SR+IGIDI+  KF
Sbjct:   183 AVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDINKDKF 229

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001523 "retinoid metabolic process" evidence=IMP

GO:0003016 "respiratory system process" evidence=IMP

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=ISO;IDA

GO:0005504 "fatty acid binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0006068 "ethanol catabolic process" evidence=ISO

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0018119 "peptidyl-cysteine S-nitrosylation" evidence=IMP

GO:0018467 "formaldehyde dehydrogenase activity" evidence=ISO

GO:0032496 "response to lipopolysaccharide" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0045777 "positive regulation of blood pressure" evidence=IMP

GO:0046294 "formaldehyde catabolic process" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0051409 "response to nitrosative stress" evidence=IMP

GO:0051775 "response to redox state" evidence=ISO

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IMP

GO:0055114 "oxidation-reduction process" evidence=ISO;IMP;IDA

DICTYBASE|DDB_G0281865 adh5 "alcohol dehydrogenase, class 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 148/232 (63%), Positives = 168/232 (72%)

Query:     1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
             MSTEG+VITCKAAVAWE  KPLVIED++V PPQ GEVRIKIL+T +CHTD+YT SG DPE
Sbjct:     1 MSTEGKVITCKAAVAWEAKKPLVIEDIEVQPPQKGEVRIKILYTGVCHTDSYTLSGSDPE 60

Query:    61 GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
             G+FPCILGHE  GIVES+GEGVT V+ GDHVIP Y  EC  CKFC S KTNLC K+R   
Sbjct:    61 GIFPCILGHEGGGIVESIGEGVTSVKVGDHVIPLYIPECGTCKFCTSNKTNLCSKIRITQ 120

Query:   121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
             G G  M D  +RF   GK I+HFMGTSTFSQYTV+ ++S   +   APLDKVCLLGCG+ 
Sbjct:   121 GKG-QMPDGTTRFKCKGKEIFHFMGTSTFSQYTVLPEISCCVVREDAPLDKVCLLGCGIT 179

Query:   181 TGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKF 232
             TG GA   TAKVE GS VA+FGLG V              R+IGID +  KF
Sbjct:   180 TGFGAAKITAKVEEGSTVAIFGLGAVGLSVAQGAVDCGAKRIIGIDNNETKF 231

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1NI89 ADH5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 152/226 (67%), Positives = 170/226 (75%)

Query:     7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCI 66
             VI CKAAVAWE  KPL IE+V+VAPP+A EVRIKI+ TALCHTDAYT SG DPEG FP I
Sbjct:     1 VIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIVATALCHTDAYTLSGADPEGCFPVI 60

Query:    67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
             LGHE AGIVESVGEGVT+V+PGD VIP Y  +C ECK+CK+ KTNLC K+R   G G +M
Sbjct:    61 LGHEGAGIVESVGEGVTKVKPGDTVIPLYIPQCGECKYCKNPKTNLCQKIRFTQGKG-LM 119

Query:   127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
              D   RF+  GK IYHFMGTSTFS+YTVV D+SVAKIDP AP DKVCLLGCG+ TG GA 
Sbjct:   120 PDGTIRFTCKGKQIYHFMGTSTFSEYTVVADISVAKIDPAAPFDKVCLLGCGISTGYGAA 179

Query:   187 WNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKF 232
              NTAKVEPGS  AVFGLG V             SR+IGIDI+   +
Sbjct:   180 VNTAKVEPGSTCAVFGLGGVGLATVMGCKAAGASRIIGIDINKNTY 225

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

UNIPROTKB|F1NKS5 ADH5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 152/226 (67%), Positives = 170/226 (75%)

Query:     7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCI 66
             VI CKAAVAWE  KPL IE+V+VAPP+A EVRIKI+ TALCHTDAYT SG DPEG FP I
Sbjct:     5 VIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIVATALCHTDAYTLSGADPEGCFPVI 64

Query:    67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
             LGHE AGIVESVGEGVT+V+PGD VIP Y  +C ECK+CK+ KTNLC K+R   G G +M
Sbjct:    65 LGHEGAGIVESVGEGVTKVKPGDTVIPLYIPQCGECKYCKNPKTNLCQKIRVTQGKG-LM 123

Query:   127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
              D   RF+  GK IYHFMGTSTFS+YTVV D+SVAKIDP AP DKVCLLGCG+ TG GA 
Sbjct:   124 PDGTIRFTCKGKQIYHFMGTSTFSEYTVVADISVAKIDPAAPFDKVCLLGCGISTGYGAA 183

Query:   187 WNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKF 232
              NTAKVEPGS  AVFGLG V             SR+IGIDI+   +
Sbjct:   184 VNTAKVEPGSTCAVFGLGGVGLATVMGCKAAGASRIIGIDINKNTY 229

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001523 "retinoid metabolic process" evidence=IEA

GO:0003016 "respiratory system process" evidence=IEA

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=IEA

GO:0005504 "fatty acid binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0018119 "peptidyl-cysteine S-nitrosylation" evidence=IEA

GO:0018467 "formaldehyde dehydrogenase activity" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0045777 "positive regulation of blood pressure" evidence=IEA

GO:0046294 "formaldehyde catabolic process" evidence=IEA

GO:0051409 "response to nitrosative stress" evidence=IEA

GO:0051775 "response to redox state" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

UNIPROTKB|F1NKS6 ADH5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 152/226 (67%), Positives = 170/226 (75%)

Query:     7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCI 66
             VI CKAAVAWE  KPL IE+V+VAPP+A EVRIKI+ TALCHTDAYT SG DPEG FP I
Sbjct:     1 VIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIVATALCHTDAYTLSGADPEGCFPVI 60

Query:    67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
             LGHE AGIVESVGEGVT+V+PGD VIP Y  +C ECK+CK+ KTNLC K+R   G G +M
Sbjct:    61 LGHEGAGIVESVGEGVTKVKPGDTVIPLYIPQCGECKYCKNPKTNLCQKIRFTQGKG-LM 119

Query:   127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
              D   RF+  GK IYHFMGTSTFS+YTVV D+SVAKIDP AP DKVCLLGCG+ TG GA 
Sbjct:   120 PDGTIRFTCKGKQIYHFMGTSTFSEYTVVADISVAKIDPAAPFDKVCLLGCGISTGYGAA 179

Query:   187 WNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKF 232
              NTAKVEPGS  AVFGLG V             SR+IGIDI+   +
Sbjct:   180 VNTAKVEPGSTCAVFGLGGVGLATVMGCKAAGASRIIGIDINKNTY 225

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

TAIR|locus:2025237 ADH1 "alcohol dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
 Identities = 146/238 (61%), Positives = 175/238 (73%)

Query:     1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
             MST GQ+I CKAAVAWE  KPLVIE+V+VAPPQ  EVRIKILFT+LCHTD Y W  K   
Sbjct:     1 MSTTGQIIRCKAAVAWEAGKPLVIEEVEVAPPQKHEVRIKILFTSLCHTDVYFWEAKGQT 60

Query:    61 GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
              LFP I GHEA GIVESVGEGVT++QPGDHV+P +  EC EC+ C S ++N+C  +R  T
Sbjct:    61 PLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPIFTGECGECRHCHSEESNMCDLLRINT 120

Query:   121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
               G M++D +SRFSINGKPIYHF+GTSTFS+YTVVH   VAKI+P APLDKVC++ CG+ 
Sbjct:   121 ERGGMIHDGESRFSINGKPIYHFLGTSTFSEYTVVHSGQVAKINPDAPLDKVCIVSCGLS 180

Query:   181 TGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFD--REF 236
             TGLGA  N AK + G  VA+FGLG V             SR+IG+D + K+FD  +EF
Sbjct:   181 TGLGATLNVAKPKKGQSVAIFGLGAVGLGAAEGARIAGASRIIGVDFNSKRFDQAKEF 238

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045333 "cellular respiration" evidence=TAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006970 "response to osmotic stress" evidence=IGI

GO:0001666 "response to hypoxia" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=ISS;IMP

UNIPROTKB|F1PLM5 F1PLM5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
 Identities = 152/229 (66%), Positives = 172/229 (75%)

Query:     6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
             QVI CKAAVAWE  KPL IE+V+VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP 
Sbjct:     6 QVIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGSFPV 65

Query:    66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
             ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +
Sbjct:    66 ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 124

Query:   126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
             M D  SRF+  GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct:   125 MPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 184

Query:   186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
               NTAKVEPGS  AVFGLG V             SR+IG+DI+  KF R
Sbjct:   185 ALNTAKVEPGSTCAVFGLGGVGLATIMGCKVAGASRIIGVDINKDKFSR 233

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96533	ADHX_ARATH	1, ., 1, ., 1, ., 2, 8, 4	0.9270	0.9748	0.6147	yes	no
P19854	ADHX_HORSE	1, ., 1, ., 1, ., 2, 8, 4	0.6855	0.9539	0.6096	yes	no
A2XAZ3	ADHX_ORYSI	1, ., 1, ., 1, ., 2, 8, 4	0.9353	0.9707	0.6089	N/A	no
P12711	ADHX_RAT	1, ., 1, ., 1, ., 2, 8, 4	0.7117	0.9539	0.6096	yes	no
O74685	FADH_PICPA	1, ., 1, ., 1, ., -	0.6017	0.9623	0.6068	yes	no
P78870	FADH1_SCHPO	1, ., 1, ., 1, ., -	0.6406	0.9623	0.6084	yes	no
P93629	ADHX_MAIZE	1, ., 1, ., 1, ., 2, 8, 4	0.9393	0.9665	0.6062	N/A	no
Q0DWH1	ADHX_ORYSJ	1, ., 1, ., 1, ., 2, 8, 4	0.9310	0.9707	0.6089	yes	no
P80572	ADHX_PEA	1, ., 1, ., 1, ., 2, 8, 4	0.8879	0.9707	0.6137	N/A	no
O19053	ADHX_RABIT	1, ., 1, ., 1, ., 2, 8, 4	0.6899	0.9539	0.6096	yes	no
Q17335	ADHX_CAEEL	1, ., 1, ., 1, ., 2, 8, 4	0.6508	0.9665	0.6015	yes	no
Q3ZC42	ADHX_BOVIN	1, ., 1, ., 1, ., 2, 8, 4	0.6899	0.9539	0.6096	yes	no
P46415	ADHX_DROME	1, ., 1, ., 1, ., 2, 8, 4	0.6724	0.9665	0.6094	yes	no
P11766	ADHX_HUMAN	1, ., 1, ., 1, ., 2, 8, 4	0.6899	0.9539	0.6096	yes	no
P28474	ADHX_MOUSE	1, ., 1, ., 1, ., 2, 8, 4	0.7030	0.9539	0.6096	yes	no
Q54TC2	ADHX_DICDI	1, ., 1, ., 1, ., 2, 8, 4	0.6724	0.9665	0.6094	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.963
4th Layer	1.1.1.1	0.946

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	239
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	1e-171
cd08301	369	cd08301, alcohol_DH_plants, Plant alcohol dehydrog	1e-148
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	1e-128
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	1e-125
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	1e-121
TIGR02818	368	TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat	1e-120
PLN02740	381	PLN02740, PLN02740, Alcohol dehydrogenase-like	1e-117
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	1e-108
PLN02827	378	PLN02827, PLN02827, Alcohol dehydrogenase-like	1e-98
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	1e-96
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	1e-73
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	8e-73
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	4e-69
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	9e-53
TIGR03451	358	TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi	1e-52
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	3e-52
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	6e-43
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	1e-39
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	4e-38
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	3e-37
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	6e-37
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	5e-35
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	2e-34
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	3e-34
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	5e-32
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	6e-32
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	6e-32
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	1e-31
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	4e-31
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	8e-31
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	2e-30
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	3e-30
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	6e-30
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	9e-29
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	5e-28
pfam08240	108	pfam08240, ADH_N, Alcohol dehydrogenase GroES-like	4e-27
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	8e-27
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	1e-26
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	1e-26
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	1e-25
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	1e-25
cd05281	341	cd05281, TDH, Threonine dehydrogenase	5e-25
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	5e-25
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	7e-25
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	2e-22
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	2e-21
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	8e-21
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	9e-21
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	4e-19
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	9e-19
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	2e-18
cd08265	384	cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD	3e-18
PRK10309	347	PRK10309, PRK10309, galactitol-1-phosphate dehydro	8e-18
cd08287	345	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase	1e-17
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	1e-17
TIGR03201	349	TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1	2e-17
PRK10083	339	PRK10083, PRK10083, putative oxidoreductase; Provi	6e-17
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	5e-16
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	2e-15
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	2e-15
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	1e-14
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	3e-14
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	5e-14
PLN02586	360	PLN02586, PLN02586, probable cinnamyl alcohol dehy	8e-14
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	1e-13
TIGR02819	393	TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenas	2e-13
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	6e-13
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	2e-12
PLN02702	364	PLN02702, PLN02702, L-idonate 5-dehydrogenase	2e-12
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	4e-12
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	7e-12
cd08230	355	cd08230, glucose_DH, Glucose dehydrogenase	1e-11
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	2e-11
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	2e-11
cd08262	341	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD	3e-11
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	6e-11
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	1e-10
cd08292	324	cd08292, ETR_like_2, 2-enoyl thioester reductase (	7e-10
cd08242	319	cd08242, MDR_like, Medium chain dehydrogenases/red	1e-09
PLN02178	375	PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase	2e-09
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	5e-09
TIGR03366	280	TIGR03366, HpnZ_proposed, putative phosphonate cat	6e-09
PRK10754	327	PRK10754, PRK10754, quinone oxidoreductase, NADPH-	2e-08
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	4e-08
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	5e-08
PRK09880	343	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro	8e-08
cd08252	336	cd08252, AL_MDR, Arginate lyase and other MDR fami	2e-07
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	2e-07
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	4e-07
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	5e-07
TIGR02822	329	TIGR02822, adh_fam_2, zinc-binding alcohol dehydro	6e-07
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	1e-06
cd08251	303	cd08251, polyketide_synthase, polyketide synthase	3e-06
cd08246	393	cd08246, crotonyl_coA_red, crotonyl-CoA reductase	4e-06
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	2e-05
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	2e-05
smart00829	287	smart00829, PKS_ER, Enoylreductase	4e-05
TIGR01751	398	TIGR01751, crot-CoA-red, crotonyl-CoA reductase	6e-05
TIGR02817	336	TIGR02817, adh_fam_1, zinc-binding alcohol dehydro	6e-05
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	2e-04
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	3e-04
TIGR03026	409	TIGR03026, NDP-sugDHase, nucleotide sugar dehydrog	0.001
cd08291	324	cd08291, ETR_like_1, 2-enoyl thioester reductase (	0.002
COG0677	436	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate de	0.002
cd05280	325	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putativ	0.003
cd05288	329	cd05288, PGDH, Prostaglandin dehydrogenases	0.004

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score =  476 bits (1228), Expect = e-171
 Identities = 178/231 (77%), Positives = 196/231 (84%), Gaps = 3/231 (1%)

Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           ITCKAAVAWE  KPL IE+V+VAPP+AGEVRIKIL T +CHTDAYT SG DPEGLFP IL
Sbjct: 1   ITCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVIL 60

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           GHE AGIVESVGEGVT V+PGDHVIP Y  EC ECKFCKSGKTNLC K+R   G G +M 
Sbjct: 61  GHEGAGIVESVGEGVTSVKPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKG-LMP 119

Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
           D  SRFS  GKPIYHFMGTSTFS+YTVV ++SVAKI+P+APLDKVCLLGCGV TG GAV 
Sbjct: 120 DGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEAPLDKVCLLGCGVTTGYGAVL 179

Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD--REF 236
           NTAKVEPGS VAVFGLG VGLAV +GAKAAGASR+IGIDI+P KF+  ++F
Sbjct: 180 NTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF 230

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase

 Score =  417 bits (1074), Expect = e-148
 Identities = 162/227 (71%), Positives = 189/227 (83%)

Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           ITCKAAVAWE  KPLVIE+V+VAPPQA EVRIKIL T+LCHTD Y W  K    LFP IL
Sbjct: 1   ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRIL 60

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           GHEAAGIVESVGEGVT+++PGDHV+P +  EC+EC+ CKS K+N+C  +R  T  GVM+N
Sbjct: 61  GHEAAGIVESVGEGVTDLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMIN 120

Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
           D KSRFSINGKPIYHF+GTSTFS+YTVVH   VAKI+P+APLDKVCLL CGV TGLGA W
Sbjct: 121 DGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAW 180

Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           N AKV+ GS VA+FGLG VGLAVAEGA+  GASR+IG+D++P KF++
Sbjct: 181 NVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQ 227

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score =  366 bits (942), Expect = e-128
 Identities = 149/227 (65%), Positives = 173/227 (76%), Gaps = 3/227 (1%)

Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           I CKAAVAWE  KPLVIE+++VAPP+A EVRIK+L T++CHTD     G     LFP IL
Sbjct: 1   IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGF-KATLFPVIL 59

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           GHE AGIVESVGEGVT ++PGD VIP +  +C EC  C+SGKTNLC K R A  +G +M 
Sbjct: 60  GHEGAGIVESVGEGVTNLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYR-ANESG-LMP 117

Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
           D  SRF+  GK IYHF+GTSTFSQYTVV +  VAKIDP APL+ VCLLGCG  TG GA W
Sbjct: 118 DGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAW 177

Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           NTAKVEPGS VAVFGLG VGL+   GAK AGASR+IG+DI+  KF++
Sbjct: 178 NTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEK 224

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score =  358 bits (920), Expect = e-125
 Identities = 142/231 (61%), Positives = 176/231 (76%), Gaps = 4/231 (1%)

Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           +  +AAVA E  KPL IE+V + PP+AGEV ++I  T +CHTDA+T SG DPEG FP +L
Sbjct: 1   MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEG-FPAVL 59

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           GHE AGIVE+VGEGVT V+PGDHVI  +  EC +CKFC SGK NLC  +R   G G M  
Sbjct: 60  GHEGAGIVEAVGEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMP- 118

Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
           D  +R S NG P+YH++G STF++YTVVH++S+ KIDP APL+K CLLGCGV TG+GAV 
Sbjct: 119 DGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVV 178

Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD--REF 236
           NTAKVEPG  VAVFGLG VGLA  +GAKAAGA R+I +DI+P+K +  ++F
Sbjct: 179 NTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229

Length = 366

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score =  350 bits (900), Expect = e-121
 Identities = 138/230 (60%), Positives = 169/230 (73%), Gaps = 2/230 (0%)

Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
           T G+VI CKAAV WEP KP  IE+++VAPP+A EVRIKI+ T +C +D +  SGK     
Sbjct: 1   TAGKVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV-TP 59

Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
           FP ILGHEAAGIVESVGEGVT V+PGD VIP +  +C +C+ C + ++NLC K       
Sbjct: 60  FPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQ 119

Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG 182
           G+M  D  SRF+  GKPI+HF+GTSTFS+YTVV +++VAKID  APL+KVCL+GCG  TG
Sbjct: 120 GLMQ-DGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTG 178

Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF 232
            GA  NTAKV PGS  AVFGLG VGL+   G KAAGASR+I +DI+  KF
Sbjct: 179 YGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKF 228

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

 Score =  346 bits (890), Expect = e-120
 Identities = 147/223 (65%), Positives = 177/223 (79%), Gaps = 1/223 (0%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           +AAVAW   +PL IE+V V  PQ GEV ++I+ T +CHTDA+T SG DPEG+FP ILGHE
Sbjct: 3   RAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHE 62

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
            AGIVE+VGEGVT V+ GDHVIP Y AEC ECKFC SGKTNLC  VR   G G+ M D  
Sbjct: 63  GAGIVEAVGEGVTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGL-MPDGT 121

Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA 190
           SRFS +G+PIYH+MG STFS+YTVV ++S+AKI+P APL++VCLLGCGV TG+GAV NTA
Sbjct: 122 SRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTA 181

Query: 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           KVE G  VAVFGLG +GL+V +GA+ A ASR+I IDI+P KF+
Sbjct: 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFE 224

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368

>gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like

 Score =  338 bits (869), Expect = e-117
 Identities = 142/237 (59%), Positives = 183/237 (77%), Gaps = 3/237 (1%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DP 59
             T+G+VITCKAAVAW P +PLV+E+++V PPQ  EVRIKIL+T++CHTD   W G+ + 
Sbjct: 2   SETQGKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEA 61

Query: 60  EGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGA 119
           +  +P ILGHEAAGIVESVGEGV +++ GDHVIP +  EC +C++CK  KTNLC   R  
Sbjct: 62  QRAYPRILGHEAAGIVESVGEGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVD 121

Query: 120 TGAGVMMNDRKSRFSI--NGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGC 177
               VM+ND K+RFS   +G+PIYHF+ TSTF++YTV+    V KIDP APL K+ LL C
Sbjct: 122 PFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVVKIDPNAPLKKMSLLSC 181

Query: 178 GVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           GV TG+GA WNTA V+ GS VA+FGLG VGLAVAEGA+A GAS++IG+DI+P+KF++
Sbjct: 182 GVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEK 238

Length = 381

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score =  317 bits (813), Expect = e-108
 Identities = 136/225 (60%), Positives = 169/225 (75%), Gaps = 2/225 (0%)

Query: 10  CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH 69
           CKAAV WE  KPL IE+++VAPP+AGEVRIK++ T +CHTD +   GK P    P ILGH
Sbjct: 1   CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP-TPLPVILGH 59

Query: 70  EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
           E AGIVES+G GVT ++PGD VIP +  +C +CK C + + NLC K RG  G G+M  D 
Sbjct: 60  EGAGIVESIGPGVTTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMS-DG 118

Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT 189
            SRF+  GKPI+HF+GTSTF++YTVV ++S+AKIDP APL+KVCL+GCG  TG GA  NT
Sbjct: 119 TSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNT 178

Query: 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           AKV PGS  AVFGLG VGL+V  G KAAGASR+I +DI+  KF++
Sbjct: 179 AKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEK 223

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|215442 PLN02827, PLN02827, Alcohol dehydrogenase-like

 Score =  291 bits (747), Expect = 1e-98
 Identities = 128/229 (55%), Positives = 168/229 (73%), Gaps = 4/229 (1%)

Query: 6   QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
            VITC+AAVAW   + LV+E+V+V+PPQ  E+RIK++ T+LC +D   W  +    LFP 
Sbjct: 9   NVITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQ---ALFPR 65

Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
           I GHEA+GIVES+GEGVTE + GDHV+  +  EC  C+ C SGK+N+C +V G    GVM
Sbjct: 66  IFGHEASGIVESIGEGVTEFEKGDHVLTVFTGECGSCRHCISGKSNMC-QVLGLERKGVM 124

Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
            +D+K+RFSI GKP+YH+   S+FS+YTVVH     K+DP APL K+CLL CGV  GLGA
Sbjct: 125 HSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGA 184

Query: 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
            WN A V  GS V +FGLGTVGL+VA+GAK  GAS++IG+DI+P+K ++
Sbjct: 185 AWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEK 233

Length = 378

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score =  286 bits (734), Expect = 1e-96
 Identities = 110/228 (48%), Positives = 144/228 (63%), Gaps = 5/228 (2%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           +AAV  E  KPL IE+V++  P  GEV ++I    LCH+D +  +G  P  L P +LGHE
Sbjct: 2   RAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLPAPL-PAVLGHE 60

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
            AG+VE VG GVT V+PGDHV+  +   C  C++C  G+ NLC    GA   G  + D  
Sbjct: 61  GAGVVEEVGPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCD--LGAGILGGQLPDGT 118

Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA 190
            RF+ +G+P+    G  TF++YTVV + SV KID   PLD+  LLGCGV TG+GAV NTA
Sbjct: 119 RRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTA 178

Query: 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD--REF 236
           +V PG  VAV G G VGL   +GA+ AGASR+I +D  P+K +  R F
Sbjct: 179 RVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRF 226

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score =  227 bits (582), Expect = 1e-73
 Identities = 101/226 (44%), Positives = 139/226 (61%), Gaps = 5/226 (2%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KAAV W P +P  +E++++  P+AGEV +K++ + LCH+D +  +G  P   +P + GHE
Sbjct: 3   KAAVLWGPGQPWEVEEIELDDPKAGEVLVKLVASGLCHSDEHLVTGDLPMPRYPILGGHE 62

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG-AGVMMNDR 129
            AG+V  VG GVT V+PGDHV+  +   C  C++C +G  NLC    GA    G  ++D 
Sbjct: 63  GAGVVTKVGPGVTGVKPGDHVVLSFIPACGRCRWCSTGLQNLCD--LGAALLTGSQISDG 120

Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT 189
             RF  +G+ +       TFS+YTVV + SV KID   PLDK CL+GCGVPTG G+  N 
Sbjct: 121 TYRFHADGQDVGQMCLLGTFSEYTVVPEASVVKIDDDIPLDKACLVGCGVPTGWGSAVNI 180

Query: 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE 235
           A V PG  V V G+G VG+   +GA  AGA +VI   +DP +F RE
Sbjct: 181 ADVRPGDTVVVMGIGGVGINAVQGAAVAGARKVIA--VDPVEFKRE 224

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score =  225 bits (576), Expect = 8e-73
 Identities = 94/225 (41%), Positives = 128/225 (56%), Gaps = 3/225 (1%)

Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           +   AAV  EP  P V+EDV++  P+  EV ++I+ T +CHTD     G  P    P +L
Sbjct: 1   MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP-TPLPAVL 59

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           GHE AG+VE+VG  VT ++PGDHV+  + A C EC  C SG    C        +G   +
Sbjct: 60  GHEGAGVVEAVGSAVTGLKPGDHVVLSF-ASCGECANCLSGHPAYCENFFPLNFSGRRPD 118

Query: 128 DRKSRFSINGKPIY-HFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
                   +G P++ HF G S+F+ Y VVH+ +V K+D   PL+ +  LGCG+ TG GAV
Sbjct: 119 GSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGAGAV 178

Query: 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
            N  K  PGS +AVFG G VGLA    AK AG + +I +DI   +
Sbjct: 179 LNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSR 223

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score =  216 bits (551), Expect = 4e-69
 Identities = 100/214 (46%), Positives = 131/214 (61%), Gaps = 2/214 (0%)

Query: 20  KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVG 79
           +PLVIE+V++ PP  GEV +KI    LCH+D    +G  P  L P  LGHEAAG+V  VG
Sbjct: 19  RPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPRPL-PMALGHEAAGVVVEVG 77

Query: 80  EGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKP 139
           EGVT+++ GDHV+  +   C  C+ C  G+  LC     A GAG +++  + R  + G  
Sbjct: 78  EGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGR-RLRLRGGE 136

Query: 140 IYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVA 199
           I H +G S F++Y VV   SV KID   PL+   L GC V TG+GAV NTA V PG  VA
Sbjct: 137 INHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVA 196

Query: 200 VFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           V GLG VGL+   GA AAGAS+V+ +D++  K  
Sbjct: 197 VVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLA 230

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score =  173 bits (440), Expect = 9e-53
 Identities = 79/225 (35%), Positives = 105/225 (46%), Gaps = 25/225 (11%)

Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           +T KAAV  +  +PL IE+V V  P  GEV IK+    +CHTD +   G  P    P I 
Sbjct: 2   MTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIP 61

Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE  G V  VGEGVT ++ GD V +      C EC++C+SG  NLC   +         
Sbjct: 62  GHEIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITG------ 115

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
                 ++ +G           +++Y VV    V KI     L +   L C   T   A+
Sbjct: 116 ------YTTDG----------GYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRAL 159

Query: 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
              A V+PG  VAV G G +G    + AKA GA  VI I    +K
Sbjct: 160 -KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEK 202

Length = 339

>gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase

 Score =  173 bits (440), Expect = 1e-52
 Identities = 91/227 (40%), Positives = 124/227 (54%), Gaps = 12/227 (5%)

Query: 9   TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTD-AYTWSGKDPEGLFPCIL 67
           T +  +A     P+ +E + V  P  GEV + I    +CHTD  Y   G + E  FP +L
Sbjct: 1   TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGINDE--FPFLL 58

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           GHEAAG+VE+VGEGVT+V PGD+V+  ++A C +C+ CK G+   C     AT    + +
Sbjct: 59  GHEAAGVVEAVGEGVTDVAPGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTD 118

Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
                    G  +   +G   F++ T+VH     K+DP A      LLGCGV  GLGA  
Sbjct: 119 ---------GTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAV 169

Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           NT  V+ G  VAV G G VG A   GA  AGAS++I +DID +K + 
Sbjct: 170 NTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEW 216

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score =  172 bits (438), Expect = 3e-52
 Identities = 77/225 (34%), Positives = 117/225 (52%), Gaps = 6/225 (2%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KAAV   PN PL IE++ V  P+ GE+ I++    +CH+D +   G+ P    P +LGHE
Sbjct: 2   KAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELP-FPPPFVLGHE 60

Query: 71  AAGIVESVGEGVT---EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
            +G V  VG  V     +  GD V+  +   C +C++C  GK NLC            + 
Sbjct: 61  ISGEVVEVGPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLY 120

Query: 128 DRKSR-FSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
           D  +R F ++G P+Y +      ++Y VV   ++A +       +  +LGC   T  GA+
Sbjct: 121 DGTTRLFRLDGGPVYMYSM-GGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGAL 179

Query: 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
            + A V PG  VAV G+G VG +  + AKA GAS +I +D+  +K
Sbjct: 180 KHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEK 224

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  145 bits (369), Expect = 6e-43
 Identities = 60/200 (30%), Positives = 83/200 (41%), Gaps = 28/200 (14%)

Query: 36  EVRIKILFTALCHTDAYTWSGKDPEGL-FPCILGHEAAGIVESVGEGVTEVQPGDHVIPC 94
           EV +++    LC TD +   G  P     P ILGHE AG+V  VG GVT V+ GD V+  
Sbjct: 1   EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVL 60

Query: 95  YQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTV 154
               C  C+ C+                                 I        F++Y V
Sbjct: 61  PNLGCGTCELCRELCPGGG--------------------------ILGEGLDGGFAEYVV 94

Query: 155 VHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGA 214
           V   ++  +     L++  LL   + T   A+     ++PG  V V G G VGL  A+ A
Sbjct: 95  VPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLA 154

Query: 215 KAAGASRVIGIDIDPKKFDR 234
           KAAGA RVI  D   +K + 
Sbjct: 155 KAAGA-RVIVTDRSDEKLEL 173

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score =  138 bits (351), Expect = 1e-39
 Identities = 80/225 (35%), Positives = 105/225 (46%), Gaps = 25/225 (11%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KAA+  +PNKPL IE+V    P  GEV IK+    +C+ D   W G  P G +P ILGHE
Sbjct: 2   KAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHE 61

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
             G VE VGEGV   +PGD VI  Y   C +C++C SG+ NLC                 
Sbjct: 62  IVGTVEEVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLCRNRA------------- 108

Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA 190
                     Y       F++Y  V + S+ K+      +   L  C V T + A+   A
Sbjct: 109 ---------EYGEEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHAL-KRA 158

Query: 191 KVEPGSIVAV-FGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
            V+ G  V V    G VG+   + AKA GA RVI +   P+K   
Sbjct: 159 GVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKI 202

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score =  135 bits (342), Expect = 4e-38
 Identities = 63/222 (28%), Positives = 93/222 (41%), Gaps = 19/222 (8%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFP-CILGH 69
           KAAV +     + +E+     P  G+V I++  T +C +D + + G +P       ILGH
Sbjct: 2   KAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGH 61

Query: 70  EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
           E  G V  VG  V   + GD V+      C  C++C++G+ NLC        AG+     
Sbjct: 62  EFVGEVVEVGV-VRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGG-- 118

Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT 189
                I+G           F++Y  V         P    ++   L   + T        
Sbjct: 119 -----IDG----------GFAEYVRVPADFNLAKLPDGIDEEAAALTEPLATAYHGHAER 163

Query: 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
           A V PG  V V G G +GL     AK  GAS VI +D  P++
Sbjct: 164 AAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPER 205

Length = 350

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score =  132 bits (335), Expect = 3e-37
 Identities = 70/226 (30%), Positives = 104/226 (46%), Gaps = 25/226 (11%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           +AAV  E  +PL I +V    P    V +++    +C +D + W G DP+   P + GHE
Sbjct: 2   RAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHE 61

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
            AG+V  VGE V+  + GD V   +   C  C +C++G +N+C                 
Sbjct: 62  FAGVVVEVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQV------------- 108

Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
                       F    +F++Y  V   DV++ ++           LGC   T   A+ +
Sbjct: 109 ---------QPGFTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRALVH 159

Query: 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
            A+V+PG  VAV G G VGL+    A A GA RVI +DID  K + 
Sbjct: 160 QARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLEL 204

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score =  132 bits (334), Expect = 6e-37
 Identities = 63/228 (27%), Positives = 94/228 (41%), Gaps = 24/228 (10%)

Query: 10  CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH 69
            +AAV   P KPL I +V +   + G V +++    +C +D +T +G+ P    P ILGH
Sbjct: 1   ARAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGH 60

Query: 70  EAAGIVESVGEGVTE------VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAG 123
           E  G V ++G GVT       ++ GD V     A C  C  C  G    C   +      
Sbjct: 61  EGVGRVVALGGGVTTDVAGEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKK----- 115

Query: 124 VMMNDRKSRFSIN-GKPIYHFMGTSTFSQYTVVH-DVSVAKIDPQAPLDKVCLLGCGVPT 181
                    +         H  G   ++++  +    ++ ++    P +      C + T
Sbjct: 116 ---------YGHEASCDDPHLSG--GYAEHIYLPPGTAIVRVPDNVPDEVAAPANCALAT 164

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229
            L A+     V  G  V V G G +GL     AK AGA RVI ID  P
Sbjct: 165 VLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSP 212

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score =  126 bits (320), Expect = 5e-35
 Identities = 70/216 (32%), Positives = 96/216 (44%), Gaps = 24/216 (11%)

Query: 20  KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESV 78
             LV+E+V V  P  GEV +K+    +CH+D +   G  P     P  LGHE AG V  V
Sbjct: 12  GLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEV 71

Query: 79  GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGK 138
           G GVT  + GD V       C  C  C+ G+ NLC            +N       I+G 
Sbjct: 72  GAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLC------------LNQGMPGLGIDG- 118

Query: 139 PIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIV 198
                     F++Y VV   ++  +    P  +  +    V T   AV    +V+PG  V
Sbjct: 119 ---------GFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETV 169

Query: 199 AVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
            V GLG +GL   + AKA GA  VI +DI  +K + 
Sbjct: 170 LVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLEL 204

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score =  125 bits (316), Expect = 2e-34
 Identities = 66/224 (29%), Positives = 94/224 (41%), Gaps = 28/224 (12%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KA V   P K  + E          +  +++  T++C +D + + G  P      ILGHE
Sbjct: 2   KALVYLGPGKIGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHE 61

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
             G V  VG  V  ++PGD V       C  C+FC+ G    C                 
Sbjct: 62  FVGEVVEVGSDVKRLKPGDRVSVPCITFCGRCRFCRRGYHAHCE---------------- 105

Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVH----DVSVAKIDPQAPLDKVCLLGCGVPTGL-GA 185
                NG   +         Q   V     D+++AKI    P +   +L   +PTG  GA
Sbjct: 106 -----NGLWGWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTGFHGA 160

Query: 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229
               A ++PGS VAV G G VGL    GA+  GA+R+I +D +P
Sbjct: 161 E--LAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNP 202

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score =  125 bits (315), Expect = 3e-34
 Identities = 68/222 (30%), Positives = 91/222 (40%), Gaps = 25/222 (11%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KAAV      PL  E+V V  P  GEV IKI    +CHTD +   G      +P + GHE
Sbjct: 1   KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHE 60

Query: 71  AAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
             G V  VG GV   + GD V +      C  C++C+ G  NLC K    TG        
Sbjct: 61  IVGEVVEVGAGVEGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVN-TG-------- 111

Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT 189
              ++  G           +++Y V        +    PL +   L C   T   A+   
Sbjct: 112 ---YTTQG----------GYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSAL-RD 157

Query: 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
           A   PG  VAV G+G +G    + A+A G    + I   P K
Sbjct: 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDK 198

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  119 bits (300), Expect = 5e-32
 Identities = 72/227 (31%), Positives = 108/227 (47%), Gaps = 30/227 (13%)

Query: 10  CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCIL 67
            KAAV  E   KP  ++DV V  P  GEV +K+  + +CHTD +   G  P +   P I 
Sbjct: 1   MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIG 60

Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE AG+V +VG GV+ ++ GD V +      C +C++C++G   LC        +G   
Sbjct: 61  GHEGAGVVVAVGPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLCPN---QKNSG--- 114

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
                 ++++G          TF++Y +     V  I      ++   L C   T   A+
Sbjct: 115 ------YTVDG----------TFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKAL 158

Query: 187 WNTAKVEPGSIVAVFGL-GTVG-LAVAEGAKAAGASRVIGIDIDPKK 231
              A ++PG  V + G  G +G L V   AKA G  RVI ID+  +K
Sbjct: 159 -KKAGLKPGDWVVISGAGGGLGHLGVQY-AKAMGL-RVIAIDVGDEK 202

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score =  118 bits (299), Expect = 6e-32
 Identities = 68/233 (29%), Positives = 100/233 (42%), Gaps = 46/233 (19%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KA V   P   L  ED+    P  GEV +K+    +C +D   + G       P +LGHE
Sbjct: 2   KALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGAYH-PPLVLGHE 59

Query: 71  AAGIVESVGEGVTEVQPGDHV-----IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
            +G VE VG GV ++  GD V     +PC      +C++CK G+ +LC            
Sbjct: 60  FSGTVEEVGSGVDDLAVGDRVAVNPLLPCG-----KCEYCKKGEYSLCSN---------- 104

Query: 126 MNDRKSRFSINGKPIYHFMGTS---TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP-- 180
                          Y ++G+     F++Y  V   ++ KI      ++  ++    P  
Sbjct: 105 ---------------YDYIGSRRDGAFAEYVSVPARNLIKIPDHVDYEEAAMIE---PAA 146

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
             L AV   A +  G  V V G GT+GL   +  K  GA RVI +DID +K  
Sbjct: 147 VALHAVRL-AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLA 198

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score =  118 bits (299), Expect = 6e-32
 Identities = 74/231 (32%), Positives = 103/231 (44%), Gaps = 46/231 (19%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KA V +E    L +E+V V  P   EV IK+    +C TD + + G+      P + GHE
Sbjct: 2   KALV-YEGPGELEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGAA-PPLVPGHE 59

Query: 71  AAGIVESVGEGVTEVQPGDHV-----IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
            AG+V +VG  VT  + GD V     I C      EC +C+ G+ NLC  +   T  GV 
Sbjct: 60  FAGVVVAVGSKVTGFKVGDRVAVDPNIYCG-----ECFYCRRGRPNLCENL---TAVGVT 111

Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTG 182
            N         G           F++Y VV    V KI      ++  L   L C     
Sbjct: 112 RN--------GG-----------FAEYVVVPAKQVYKIPDNLSFEEAALAEPLSC----- 147

Query: 183 LGAVW--NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
             AV   +   ++PG  V VFG G +GL +A+  K  GASRV   + + +K
Sbjct: 148 --AVHGLDLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEK 196

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score =  117 bits (296), Expect = 1e-31
 Identities = 73/226 (32%), Positives = 108/226 (47%), Gaps = 33/226 (14%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KA V  +P + L + D+    P AGEV +++    +C +D + + G++P   +P ILGHE
Sbjct: 2   KALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHE 60

Query: 71  AAGIVESVGEGVTEVQPGDHV--IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
            +G V  VGEGV  ++ GD V   P     C EC  C+ G+ N C  ++      V+   
Sbjct: 61  LSGEVVEVGEGVAGLKVGDRVVVDPYI--SCGECYACRKGRPNCCENLQ------VLGVH 112

Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA-VW 187
           R      +G           F++Y VV       +     LD+  L+    P  +GA   
Sbjct: 113 R------DG----------GFAEYIVV-PADALLVPEGLSLDQAALVE---PLAIGAHAV 152

Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
             A V  G  V V G G +GL V + AKA GA RVI +DID ++ +
Sbjct: 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLE 197

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score =  116 bits (294), Expect = 4e-31
 Identities = 78/247 (31%), Positives = 109/247 (44%), Gaps = 75/247 (30%)

Query: 12  AAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDPEGLF----PCI 66
           AAV   P   L +E+  +  P  GEV +++    +C +D + +  G+   G F    P +
Sbjct: 1   AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRI--GDFVVKEPMV 57

Query: 67  LGHEAAGIVESVGEGVTEVQPGDHV-----IPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           LGHE+AG V +VG GVT ++ GD V     +P     CR C+FCKSG+ NLC  +R    
Sbjct: 58  LGHESAGTVVAVGSGVTHLKVGDRVAIEPGVP-----CRTCEFCKSGRYNLCPDMR---- 108

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTS----TFSQYTVVHD----------VSV---AKID 164
                                F  T     T  +Y V H           VS+   A ++
Sbjct: 109 ---------------------FAATPPVDGTLCRY-VNHPADFCHKLPDNVSLEEGALVE 146

Query: 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIG 224
           P +    V +  C            A V PG  V VFG G +GL  A  AKA GA++V+ 
Sbjct: 147 PLS----VGVHAC----------RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVV 192

Query: 225 IDIDPKK 231
            DIDP +
Sbjct: 193 TDIDPSR 199

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score =  115 bits (291), Expect = 8e-31
 Identities = 66/222 (29%), Positives = 94/222 (42%), Gaps = 25/222 (11%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KA +     +   IE+V    P   EV IK+ +  LC+ D     G  P   +P ILGHE
Sbjct: 2   KAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHE 61

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
             G VE VGE V   +PGD V     A    C++C+SG+   C                K
Sbjct: 62  VVGTVEEVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYC----------------K 105

Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA 190
           +R    G+ +  F     F++Y  V   S+ K+ P    +   ++ C        +   A
Sbjct: 106 NRLGY-GEELDGF-----FAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGL-RRA 158

Query: 191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK 231
            V+ G  V V G  G VG+   + AKA GA +VI +     K
Sbjct: 159 GVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESK 199

Length = 334

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score =  115 bits (289), Expect = 2e-30
 Identities = 68/236 (28%), Positives = 99/236 (41%), Gaps = 46/236 (19%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KAAV   PN  + +E+V V  P  GEV +K+    +C TD     G   +   P ILGHE
Sbjct: 2   KAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHE 60

Query: 71  AAGIVESVGEGVTEVQPGD-----HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
            AG +  VG+GVT  + GD       +PC      EC +C  G  N+C   +        
Sbjct: 61  IAGEIVEVGDGVTGFKVGDRVFVAPHVPCG-----ECHYCLRGNENMCPNYKKFG----- 110

Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA-----KIDPQAPLDKVCL---LGC 177
                            + G   F++Y  V   +V      K+      ++  L   L C
Sbjct: 111 ---------------NLYDG--GFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALVEPLAC 153

Query: 178 GVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
            +          A ++PG  V V G G +GL  A  AKA+GA +VI  D++  + +
Sbjct: 154 CI-----NAQRKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLE 204

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score =  114 bits (287), Expect = 3e-30
 Identities = 56/214 (26%), Positives = 91/214 (42%), Gaps = 23/214 (10%)

Query: 19  NKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTW-SGKDPEGLFPCILGHEAAGIVES 77
           ++ + + +  V  P  GEV +++  + LC +D + +  G         I GHE AG+V +
Sbjct: 9   DRTVELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVA 68

Query: 78  VGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSING 137
           VG GVT  + GD V+  +   C  C+ C+ G   LC                      + 
Sbjct: 69  VGPGVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLC---------------------TSK 107

Query: 138 KPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSI 197
           +  Y +      ++Y +V + ++  +          LL CG+ T   A+     V     
Sbjct: 108 RAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHAL-RRVGVSGRDT 166

Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
           V V G G VGL     A+A GA  VIG+D  P++
Sbjct: 167 VLVVGAGPVGLGALMLARALGAEDVIGVDPSPER 200

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score =  113 bits (286), Expect = 6e-30
 Identities = 68/227 (29%), Positives = 96/227 (42%), Gaps = 44/227 (19%)

Query: 13  AVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTD--AYTWSG-----KDPEGL--- 62
           A  +   K + +E+V   P + GEV+IK+ +  +C +D   Y   G      +       
Sbjct: 3   AARYHGRKDIRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYL-DGPIFIPTEGHPHLTG 61

Query: 63  --FPCILGHEAAGIVESVGEGVTEVQPGDHVI--PCYQAECRECKFCKSGKTNLCGKVRG 118
              P  LGHE +G+V  VG GVT  + GD V+  P  +  C  C  CK G  NLC  + G
Sbjct: 62  ETAPVTLGHEFSGVVVEVGSGVTGFKVGDRVVVEPTIK--CGTCGACKRGLYNLCDSL-G 118

Query: 119 ATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 178
             G G             G           F++Y VV    V K+    PL++  L+   
Sbjct: 119 FIGLGGG----------GG----------GFAEYVVVPAYHVHKLPDNVPLEEAALVE-- 156

Query: 179 VPT--GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVI 223
            P      AV   +  +PG    V G G +GL      KAAGAS++I
Sbjct: 157 -PLAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKII 201

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score =  111 bits (279), Expect = 9e-29
 Identities = 71/224 (31%), Positives = 98/224 (43%), Gaps = 14/224 (6%)

Query: 13  AVAWEPNKPLVIEDVQVAPP---QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH 69
           A+ W     + +E+V    P      +  +++  TA+C +D + + G  P      ILGH
Sbjct: 3   ALVWHGKGDVRVEEV--PDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKKGDILGH 60

Query: 70  EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
           E  G+VE VG  V  ++ GD V+  +   C EC +CK G  + C     +     +    
Sbjct: 61  EFMGVVEEVGPEVRNLKVGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHA 120

Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVH----DVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
            +   I G    H  G     Q   V     DV   KI      +K   L   +PTG  A
Sbjct: 121 GA--GIFGYS--HLTGGYAGGQAEYVRVPFADVGPFKIPDDLSDEKALFLSDILPTGYHA 176

Query: 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229
               A+V+PG  VAV+G G VGL  A  AK  GA RVI ID  P
Sbjct: 177 A-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVP 219

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score =  108 bits (272), Expect = 5e-28
 Identities = 66/229 (28%), Positives = 99/229 (43%), Gaps = 30/229 (13%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL---FPCIL 67
           KAA  +E  KPL +EDV V  P  G+V +++    +CH+D +   G     L    P  L
Sbjct: 2   KAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTL 61

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE AG VE VG GV  ++ GD V+  +    C  C++C+ G+ N C             
Sbjct: 62  GHENAGWVEEVGSGVDGLKEGDPVV-VHPPWGCGTCRYCRRGEENYC------------E 108

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
           N R      +G           F++Y +V    + K+       +   L     T   AV
Sbjct: 109 NARFPGIGTDG----------GFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAV 158

Query: 187 WNTAKV-EPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKKFD 233
                  +PGS V V G+G +G +AV +  +A   + VI +D   +   
Sbjct: 159 KKALPYLDPGSTVVVIGVGGLGHIAV-QILRALTPATVIAVDRSEEALK 206

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain

 Score =  100 bits (250), Expect = 4e-27
 Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 28/133 (21%)

Query: 34  AGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIP 93
            GEV +++    +C +D + + G+ P    P ILGHE AGIVE VG GVT ++ GD V+ 
Sbjct: 1   PGEVLVRVKAAGICGSDLHIYRGEPPPVKLPLILGHEGAGIVEEVGPGVTGLKVGDRVVV 60

Query: 94  CYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTS---TFS 150
                C +C  C+ G+ NLC                         P   F+G      F+
Sbjct: 61  YPLIPCGKCAACREGRENLC-------------------------PNGKFLGVHLDGGFA 95

Query: 151 QYTVVHDVSVAKI 163
           +Y VV   ++  +
Sbjct: 96  EYVVVPARNLVPL 108

This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  104 bits (263), Expect = 8e-27
 Identities = 65/221 (29%), Positives = 98/221 (44%), Gaps = 33/221 (14%)

Query: 11  KAAVAWEPNK----PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCI 66
           KA V  +P      PL + +V V  P  GEV IK+    +C TD +   G  P    P I
Sbjct: 2   KAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLI 61

Query: 67  LGHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
            GHE  G VE+VG GVT    GD V +P   + C EC++C+SG+ NLC   R  TG    
Sbjct: 62  PGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNAR-FTG---- 116

Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
                  ++++G           +++Y V  +     I      ++   L C    G  A
Sbjct: 117 -------YTVDGG----------YAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGYRA 159

Query: 186 VWNTAKVEPGSIVAVFGLGTVG-----LAVAEGAKAAGASR 221
           +   A ++PG  + ++G G        +A  +GA+    +R
Sbjct: 160 L-KLAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTR 199

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score =  105 bits (263), Expect = 1e-26
 Identities = 62/222 (27%), Positives = 93/222 (41%), Gaps = 33/222 (14%)

Query: 19  NKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL-FPCILGHEAAGIVES 77
            + L   D+    P   EV +++   AL H D +   G     L  P ILG + AG+VE+
Sbjct: 12  PEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEA 71

Query: 78  VGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSING 137
           VG GVT V+PG  V+      C  C++C +G+ NLC                 +++ I G
Sbjct: 72  VGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLC-----------------AQYGILG 114

Query: 138 KPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT----AKVE 193
               H  G   +++Y  V   ++  I      ++        P      W+     A++ 
Sbjct: 115 ---EHVDG--GYAEYVAVPARNLLPIPDNLSFEE----AAAAPLTFLTAWHMLVTRARLR 165

Query: 194 PGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           PG  V V G G+ VG A  + AK  GA  VI       K +R
Sbjct: 166 PGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLER 206

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  104 bits (262), Expect = 1e-26
 Identities = 66/227 (29%), Positives = 93/227 (40%), Gaps = 28/227 (12%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           K   A + +  L     +  P    +V IKI +  +CH+D +T   +     +P + GHE
Sbjct: 1   KGYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHE 60

Query: 71  AAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
             GIV +VG  VT+ + GD V + C    C  C+ CKSG+   C K              
Sbjct: 61  IVGIVVAVGSKVTKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTY--------- 111

Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA-VWN 188
                 NGK     +    ++ + VV +  V KI           L C      G  V++
Sbjct: 112 ------NGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCA-----GITVYS 160

Query: 189 ---TAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKK 231
                 V PG  V V G+G +G LAV + AKA GA  V      P K
Sbjct: 161 PLKRNGVGPGKRVGVVGIGGLGHLAV-KFAKALGA-EVTAFSRSPSK 205

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score =  102 bits (256), Expect = 1e-25
 Identities = 60/217 (27%), Positives = 96/217 (44%), Gaps = 23/217 (10%)

Query: 13  AVAWEPNKPLVIEDVQV-APPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEA 71
           AV ++    + +E+V +       +  +K+   A+C +D + + G  P      +LGHE 
Sbjct: 3   AVVFKGPGDVRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIPSTP-GFVLGHEF 61

Query: 72  AGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKS 131
            G V  VG  V  ++ GD V+  +   C EC +C+ G++  C K      AG        
Sbjct: 62  VGEVVEVGPEVRTLKVGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAG-------- 113

Query: 132 RFSINGKPIYHFMGTSTFSQYTVV--HDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT 189
             +++G            ++Y  V   D ++ K+      +   LLG  +PTG       
Sbjct: 114 SPNLDGAQ----------AEYVRVPFADGTLLKLPDGLSDEAALLLGDILPTGYFGAKR- 162

Query: 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
           A+V PG  VAV G G VGL     A+  GA+RV  +D
Sbjct: 163 AQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVD 199

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score =  102 bits (256), Expect = 1e-25
 Identities = 65/233 (27%), Positives = 89/233 (38%), Gaps = 34/233 (14%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG------------KD 58
           KAA   EP KPL   ++    P   EV +K+    +CH+D + W G             D
Sbjct: 2   KAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDD 61

Query: 59  PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRG 118
                P +LGHE  G V +VG    +V+ GD V+      C EC  C +G  NLC K R 
Sbjct: 62  RGVKLPLVLGHEIVGEVVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGR- 120

Query: 119 ATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 178
           A G                  I+   G   +++Y +V                   L C 
Sbjct: 121 ALG------------------IFQDGG---YAEYVIVPHSRYLVDPGGLDPALAATLACS 159

Query: 179 VPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
             T   AV     +     V + G G +GL      KA G + +I +DID  K
Sbjct: 160 GLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAK 212

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score =  100 bits (251), Expect = 5e-25
 Identities = 78/235 (33%), Positives = 104/235 (44%), Gaps = 50/235 (21%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDA--YTW-----SGKDPEGLF 63
           KA V  +      + +V V  P  GEV IK+L  ++C TD   Y W     S   P    
Sbjct: 2   KAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKP---- 57

Query: 64  PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAE----CRECKFCKSGKTNLCGKVRGA 119
           P I GHE AG V  VGEGVT V+ GD+V     AE    C +C  C++G  ++C   +  
Sbjct: 58  PLIFGHEFAGEVVEVGEGVTRVKVGDYV----SAETHIVCGKCYQCRTGNYHVCQNTK-- 111

Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL---LG 176
              GV   D       +G           F++Y VV + ++ K D   P +   +   LG
Sbjct: 112 -ILGV---DT------DG----------CFAEYVVVPEENLWKNDKDIPPEIASIQEPLG 151

Query: 177 CGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
             V T L        V  G  V + G G +GL     AKAAGAS VI  D +P +
Sbjct: 152 NAVHTVL-----AGDV-SGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYR 200

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score =  100 bits (251), Expect = 5e-25
 Identities = 70/225 (31%), Positives = 100/225 (44%), Gaps = 33/225 (14%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQ---AGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           KA V   P K   I       P      +  +K+L T +C TD +   G  P      IL
Sbjct: 2   KALVYHGPGK---ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVTPGRIL 58

Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE  G+VE VG  VT  + GD V I C  + C  C +C+ G  + C      +G  ++ 
Sbjct: 59  GHEGVGVVEEVGSAVTNFKVGDRVLISCISS-CGTCGYCRKGLYSHC-----ESGGWILG 112

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYT-VVH-DVSVAKIDPQAPLDKVCLLGCGVPTGL- 183
           N       I+G          T ++Y  + H D S+ K+      +   +L   +PTG  
Sbjct: 113 NL------IDG----------TQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPTGYE 156

Query: 184 GAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228
             V N  KV+PG  VA+ G G VGLA    A+    S++I +D+D
Sbjct: 157 CGVLN-GKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLD 200

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 99.3 bits (248), Expect = 7e-25
 Identities = 60/213 (28%), Positives = 90/213 (42%), Gaps = 31/213 (14%)

Query: 26  DVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV 85
           +V    P  GEV IK+    +C +D + + G       P +LGHE +G +  VG  V   
Sbjct: 18  EVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVEGW 77

Query: 86  QPGDHVIPCYQAE-CRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFM 144
           + GD V+       C  C +C+ G  NLC   R   G              +G       
Sbjct: 78  KVGDRVVSETTFSTCGRCPYCRRGDYNLCPH-RKGIGTQA-----------DG------- 118

Query: 145 GTSTFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTGLGAVWNTAKVEPGSIVAVF 201
               F++Y +V + S+ ++     L+   L   L   V     AV   + + PG  V VF
Sbjct: 119 ---GFAEYVLVPEESLHELPENLSLEAAALTEPLAVAV----HAVAERSGIRPGDTVVVF 171

Query: 202 GLGTVGLAVAEGAKAAGASRVI-GIDIDPKKFD 233
           G G +GL  A+ AK  GA+ V+ G + D  + D
Sbjct: 172 GPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLD 204

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score = 93.8 bits (234), Expect = 2e-22
 Identities = 61/233 (26%), Positives = 96/233 (41%), Gaps = 39/233 (16%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYT-WSGK--DPEGLFPCIL 67
           KA       K   IE   +      +  ++    A C +D +T W G   +  G+   IL
Sbjct: 2   KAFAMLGIGKVGWIE-KPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGM---IL 57

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVI-----PCYQAECRECKFCKSGKTNLCGKVRGATGA 122
           GHEA G+VE VG  V + +PGD VI     P ++         + G  +  G        
Sbjct: 58  GHEAVGVVEEVGSEVKDFKPGDRVIVPAITPDWR-----SVAAQRGYPSQSG-------- 104

Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQAPLDKVCLLGCGVP 180
             M+   K     +G           F++Y  V+D   ++A +      ++  +L   + 
Sbjct: 105 -GMLGGWKFSNFKDG----------VFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMS 153

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           TG       A ++ G  VAVFG+G VGL    GA+  GA R+I +   P + +
Sbjct: 154 TGFHGAEL-ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVE 205

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 90.4 bits (225), Expect = 2e-21
 Identities = 67/210 (31%), Positives = 97/210 (46%), Gaps = 31/210 (14%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KA    EP  PL + +  V  P  GEV IK+    +CH+DA+   G  P   +P + GHE
Sbjct: 2   KAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHE 61

Query: 71  AAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLC--GKVRGATGAGVMMN 127
             G +++VGEGV+  + GD V +  +   C  C  C+ G    C  GKV G T  G    
Sbjct: 62  VVGRIDAVGEGVSRWKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRDG---- 117

Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI-DPQAPLDKVCLLGCGVPTGLGAV 186
                                +++Y +    ++A+I D     +   LL  GV T   A+
Sbjct: 118 --------------------GYAEYMLAPAEALARIPDDLDAAEAAPLLCAGV-TTFNAL 156

Query: 187 WNTAKVEPGSIVAVFGLGTVG-LAVAEGAK 215
            N+   +PG +VAV G+G +G LAV   AK
Sbjct: 157 RNS-GAKPGDLVAVQGIGGLGHLAVQYAAK 185

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 89.2 bits (222), Expect = 8e-21
 Identities = 67/205 (32%), Positives = 91/205 (44%), Gaps = 29/205 (14%)

Query: 39  IKILFTALCHTDAYTWSGK--DPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQ 96
           ++I  TA+C +D + + G+     GL   +LGHEA G VE VG  V  ++ GD V+  + 
Sbjct: 30  VRITTTAICGSDLHMYRGRTGAEPGL---VLGHEAMGEVEEVGSAVESLKVGDRVVVPFN 86

Query: 97  AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQ--YTV 154
             C  C+ CK G T +C  V      G                 Y  MG     Q  Y  
Sbjct: 87  VACGRCRNCKRGLTGVCLTVNPGRAGGAYG--------------YVDMGPYGGGQAEYLR 132

Query: 155 V--HDVSVAKIDPQAP----LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGL 208
           V   D ++ K+  +       D + L     PTG   +   A V+PG  VAVFG G VGL
Sbjct: 133 VPYADFNLLKLPDRDGAKEKDDYLMLSDI-FPTGWHGL-ELAGVQPGDTVAVFGAGPVGL 190

Query: 209 AVAEGAKAAGASRVIGIDIDPKKFD 233
             A  A   GASRV  +D  P++ D
Sbjct: 191 MAAYSAILRGASRVYVVDHVPERLD 215

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 88.9 bits (221), Expect = 9e-21
 Identities = 68/228 (29%), Positives = 107/228 (46%), Gaps = 37/228 (16%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCILG 68
           KAAV  + +   V+ +  + P + GE  +K+ +  +CHTD +  +G   D  G    ILG
Sbjct: 2   KAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGDKTG---RILG 58

Query: 69  HEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           HE  GIV+ VG GVT ++ GD V I  +   C  C++C +G+  LC  V+ A        
Sbjct: 59  HEGIGIVKEVGPGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAG------- 111

Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA---KIDPQAPLDKVCLLGCGVPTGLG 184
                ++++G      M      Q  V  D +V     +DP       C    GV T   
Sbjct: 112 -----YTVDGG-----MAE----QCIVTADYAVKVPEGLDPAQASSITC---AGV-TTYK 153

Query: 185 AVWNTAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKK 231
           A+   + ++PG  +A++G G +G LA+        A +VI +DI+  K
Sbjct: 154 AI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDK 199

Length = 338

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score = 84.3 bits (209), Expect = 4e-19
 Identities = 54/217 (24%), Positives = 77/217 (35%), Gaps = 50/217 (23%)

Query: 11  KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-PEGLFPCIL 67
           KA V  E   P  L + +V    P  GEV +++    +   D     G   P    P I 
Sbjct: 2   KAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIP 61

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           G EAAG+V +VG GVT  + GD V                          G  G      
Sbjct: 62  GSEAAGVVVAVGSGVTGFKVGDRVAALGG--------------------VGRDGG----- 96

Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
                                +++Y VV    +  +      ++   L     T   A++
Sbjct: 97  ---------------------YAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALF 135

Query: 188 NTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVI 223
           + A ++PG  V V G  G VG A  + AKA GA+ V 
Sbjct: 136 DRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVA 172

Length = 326

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score = 83.3 bits (207), Expect = 9e-19
 Identities = 66/233 (28%), Positives = 97/233 (41%), Gaps = 50/233 (21%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-------PEGLF 63
           KA V  +    L + DV V  P   +V IK+  TA+C TD + ++  +            
Sbjct: 2   KALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPV---- 57

Query: 64  PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAE----CRECKFCKSGKTNLCGKVRGA 119
           P ++GHE  G V  VG  VT  + GD V      E    C  C+ C++G+ +LC   R  
Sbjct: 58  PMVVGHEFVGEVVEVGSEVTGFKVGDRV----SGEGHIVCGHCRNCRAGRRHLC---RNT 110

Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL---LG 176
            G GV   +R       G           F++Y V+   +V KI    P D   +    G
Sbjct: 111 KGVGV---NR------PG----------AFAEYLVIPAFNVWKIPDDIPDDLAAIFDPFG 151

Query: 177 CGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229
             V T L   ++      G  V + G G +G+  A  AK  GA  V+  D++ 
Sbjct: 152 NAVHTALS--FDLV----GEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNE 198

Length = 341

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 82.7 bits (205), Expect = 2e-18
 Identities = 60/223 (26%), Positives = 90/223 (40%), Gaps = 50/223 (22%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF-------PCILGHEAAGI 74
           L +E+     P  GEVR+++    +C +D + +      G F       P +LGHE +G+
Sbjct: 9   LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQ----HGGFGTVRLREPMVLGHEVSGV 64

Query: 75  VESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFS 134
           VE+VG GVT + PG  V       C  C +C++G+ NLC  +R                 
Sbjct: 65  VEAVGPGVTGLAPGQRVAVNPSRPCGTCDYCRAGRPNLCLNMR----------------- 107

Query: 135 INGKPIYHFMGTST--------FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP--TGLG 184
                   F+G++         F +Y VV       +     L          P    L 
Sbjct: 108 --------FLGSAMRFPHVQGGFREYLVVDASQCVPLPDGLSLR---RAALAEPLAVALH 156

Query: 185 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227
           AV N A    G  V V G G +G  V   A+ AGA+ ++  D+
Sbjct: 157 AV-NRAGDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDL 198

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family

 Score = 82.2 bits (203), Expect = 3e-18
 Identities = 65/225 (28%), Positives = 100/225 (44%), Gaps = 38/225 (16%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL--------FPCILGHEAAG 73
           L +EDV V   +  E+ I++    +C +D + +   D +G         FP ++GHE +G
Sbjct: 39  LRVEDVPVPNLKPDEILIRVKACGICGSDIHLYE-TDKDGYILYPGLTEFPVVIGHEFSG 97

Query: 74  IVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRF 133
           +VE  G+ V   + GD V       C  C+ C+SG  N C             N ++  F
Sbjct: 98  VVEKTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHC------------KNLKELGF 145

Query: 134 SINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL---DKVCLLGCGV-PTGL---GAV 186
           S +G           F++Y  V+     +I+    +   DK    G  V PT +   G  
Sbjct: 146 SADG----------AFAEYIAVNARYAWEINELREIYSEDKAFEAGALVEPTSVAYNGLF 195

Query: 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
                  PG+ V V+G G +GLA    AKAAGAS+VI  +I  ++
Sbjct: 196 IRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEER 240

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384

>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional

 Score = 80.6 bits (199), Expect = 8e-18
 Identities = 56/204 (27%), Positives = 88/204 (43%), Gaps = 41/204 (20%)

Query: 36  EVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV---- 91
           +V +K+  + LC +D            +P  LGHE +G VE+VG GV ++ PGD V    
Sbjct: 27  DVLVKVASSGLCGSDIPRIFKNGAH-YYPITLGHEFSGYVEAVGSGVDDLHPGDAVACVP 85

Query: 92  -IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTF- 149
            +PC+      C  C  G  +LC K                         Y F+G+    
Sbjct: 86  LLPCFT-----CPECLRGFYSLCAK-------------------------YDFIGSRRDG 115

Query: 150 --SQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVG 207
             ++Y VV   ++  +    P++    +   +  GL A ++ A+   G  V + G GT+G
Sbjct: 116 GNAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGLHA-FHLAQGCEGKNVIIIGAGTIG 173

Query: 208 LAVAEGAKAAGASRVIGIDIDPKK 231
           L   + A A GA  V  IDI+ +K
Sbjct: 174 LLAIQCAVALGAKSVTAIDINSEK 197

Length = 347

>gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like

 Score = 80.4 bits (199), Expect = 1e-17
 Identities = 64/221 (28%), Positives = 91/221 (41%), Gaps = 33/221 (14%)

Query: 11  KAAVAWEPNKPLV--IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILG 68
           +A V   P    V  + D  +  P   +  I+++ T +C +D + + G  P    P  +G
Sbjct: 2   RATVIHGPGDIRVEEVPDPVIEEP--TDAVIRVVATCVCGSDLWPYRGVSPTR-APAPIG 58

Query: 69  HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
           HE  G+VE VG  VT V+PGD VI  +      C FC++G T  C               
Sbjct: 59  HEFVGVVEEVGSEVTSVKPGDFVIAPFAISDGTCPFCRAGFTTSC--------------- 103

Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVH-DVSVAKIDPQAPLDKVCL-----LGCGVPTG 182
                 ++G     F+         V   D ++ K+      D+  L     L   + TG
Sbjct: 104 ------VHGGFWGAFVDGGQGEYVRVPLADGTLVKVPGSPSDDEDLLPSLLALSDVMGTG 157

Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVI 223
             A   +A V PGS V V G G VGL     AK  GA R+I
Sbjct: 158 HHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERII 197

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score = 79.9 bits (197), Expect = 1e-17
 Identities = 65/219 (29%), Positives = 93/219 (42%), Gaps = 36/219 (16%)

Query: 23  VIEDVQVAPPQAGEVRIKILFTALCHTDA--YTWSGKDPEGL-FPCILGHEAAGIVESVG 79
            + +V V  P  GEV IK+L T++C TD   Y W       +  P ++GHE AG V  +G
Sbjct: 12  ELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIG 71

Query: 80  EGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKP 139
            GV  ++ GD+V       C +C  C+ G+ ++C   +     GV   D           
Sbjct: 72  PGVEGIKVGDYVSVETHIVCGKCYACRRGQYHVC---QNTKIFGV---DT---------- 115

Query: 140 IYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTGLGAVWNTAKVEPGS 196
                    F++Y VV   ++ K     P +   +   LG  V T L      A    G 
Sbjct: 116 ------DGCFAEYAVVPAQNIWKNPKSIPPEYATIQEPLGNAVHTVL------AGPISGK 163

Query: 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE 235
            V V G G +GL     AKA+GA  VI    DP ++  E
Sbjct: 164 SVLVTGAGPIGLMAIAVAKASGAYPVIV--SDPNEYRLE 200

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

 Score = 79.6 bits (196), Expect = 2e-17
 Identities = 70/218 (32%), Positives = 102/218 (46%), Gaps = 20/218 (9%)

Query: 17  EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTD-AYTWSGKDPEGLFPCILGHEAAGIV 75
           EP KP+V   V++    AG+V +K+    +CHTD +Y + G       P  LGHE +G V
Sbjct: 6   EPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRV 65

Query: 76  ESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSI 135
              G G      G  VI      C EC+ CK+G+  +C   R     G   ND +  F+ 
Sbjct: 66  IQAGAG-AASWIGKAVIVPAVIPCGECELCKTGRGTIC---RAQKMPG---NDMQGGFA- 117

Query: 136 NGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPG 195
                 H +  +      VV +  +A      PL+ V ++   V T   A    A ++ G
Sbjct: 118 -----SHIVVPAKG--LCVVDEARLAAAG--LPLEHVSVVADAVTTPYQAAVQ-AGLKKG 167

Query: 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
            +V V G G VG  + + AKA GA+ V+ IDIDP+K +
Sbjct: 168 DLVIVIGAGGVGGYMVQTAKAMGAA-VVAIDIDPEKLE 204

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349

>gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional

 Score = 78.2 bits (193), Expect = 6e-17
 Identities = 62/221 (28%), Positives = 96/221 (43%), Gaps = 34/221 (15%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           K+ V  +PN  L IE+  +  P AGEVR+K+    +C +D++ + G +P   +P ++GHE
Sbjct: 2   KSIVIEKPNS-LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHE 60

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
             G++++VGEGV   + G+ V       C  C  C  GK N+C                 
Sbjct: 61  FFGVIDAVGEGVDAARIGERVAVDPVISCGHCYPCSIGKPNVC----------------- 103

Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV---PTGLGA-V 186
           +   + G    H  G   FS+Y VV   +  +I P A  D+       V   P  + A V
Sbjct: 104 TSLVVLG---VHRDG--GFSEYAVVPAKNAHRI-PDAIADQ-----YAVMVEPFTIAANV 152

Query: 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGID 226
                     +  ++G G VGL + +  K       VI  D
Sbjct: 153 TGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVAD 193

Length = 339

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 75.7 bits (187), Expect = 5e-16
 Identities = 61/236 (25%), Positives = 77/236 (32%), Gaps = 56/236 (23%)

Query: 11  KAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH 69
           KAAV   P    LV+ DV V  P   EV +K+   AL   D            +P ILG 
Sbjct: 2   KAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGFI-PSYPAILGC 60

Query: 70  EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
           + AG V  VG GVT  + GD V                             G     N  
Sbjct: 61  DFAGTVVEVGSGVTRFKVGDRVA----------------------------GFVHGGNPN 92

Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT-------- 181
             R                F +Y V      AKI      ++   L  G+ T        
Sbjct: 93  DPR-------------NGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQK 139

Query: 182 -GLGAVW-NTAKVEPGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
            GL       +    G  V ++G  + VG    + AK AG  +VI     PK FD 
Sbjct: 140 LGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITT-ASPKNFDL 193

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score = 74.1 bits (183), Expect = 2e-15
 Identities = 63/218 (28%), Positives = 84/218 (38%), Gaps = 54/218 (24%)

Query: 11  KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL-FPCIL 67
           KA V  E   P  LV+E+V   P   GEVRI++    +   D     GK       P + 
Sbjct: 2   KAVVCKELGGPEDLVLEEVPPEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVP 61

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           G E AG+VE+VGEGVT  + GD V+                           TG G    
Sbjct: 62  GSEVAGVVEAVGEGVTGFKVGDRVV-------------------------ALTGQG---- 92

Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
                                F++  VV   +V  +      ++   L     T   A+ 
Sbjct: 93  --------------------GFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALV 132

Query: 188 NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIG 224
             A+++PG  V V G  G VGLA  + AKA GA RVI 
Sbjct: 133 RRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIA 169

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 73.9 bits (182), Expect = 2e-15
 Identities = 61/218 (27%), Positives = 91/218 (41%), Gaps = 28/218 (12%)

Query: 11  KAAVAWEPN--KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILG 68
             A+ +E +  + L +EDV+   P  GEV I++    +   D    +    + + P I G
Sbjct: 1   MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVKVKPM-PHIPG 59

Query: 69  HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
            E AG+VE VG+ V  V+ GD V+   +     C  C SG   LC   R     GV+ N 
Sbjct: 60  AEFAGVVEEVGDHVKGVKKGDRVVVYNRVFDGTCDMCLSGNEMLC---RNGGIIGVVSN- 115

Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
                               +++Y VV + ++ KI      +    L     T   A+  
Sbjct: 116 ------------------GGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHAL-K 156

Query: 189 TAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI 225
           TA + PG  V VFG  G  G+   + AK  GA  VI +
Sbjct: 157 TAGLGPGETVVVFGASGNTGIFAVQLAKMMGA-EVIAV 193

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 71.1 bits (175), Expect = 1e-14
 Identities = 52/225 (23%), Positives = 74/225 (32%), Gaps = 61/225 (27%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQA--GEVRIKILFTALCHTDAYTWSG---KDPEGLFPC 65
           KA    E   P V+E   V  P+   GEV +K+    +   D     G          P 
Sbjct: 2   KAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPL 61

Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
           I GH+ AG+V +VG GVT  + GD V                                  
Sbjct: 62  IPGHDVAGVVVAVGPGVTGFKVGDEVF--------------------------------- 88

Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP----T 181
                      G   +   G   +++Y VV    +A        +        +P    T
Sbjct: 89  -----------GMTPFTRGG--AYAEYVVVPADELALKPANLSFE----EAAALPLAGLT 131

Query: 182 GLGAVWNTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGI 225
              A++    ++ G  V + G  G VG    + AKA GA RVI  
Sbjct: 132 AWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGA-RVIAT 175

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 70.3 bits (173), Expect = 3e-14
 Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGE 80
          L IE++ V  P AGEV I++    L   DA    G   E    P  LG+EAAG+VE+VG 
Sbjct: 15 LRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGA 74

Query: 81 GVTEVQPGDHV 91
          GVT    GD V
Sbjct: 75 GVTGFAVGDRV 85

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score = 69.7 bits (171), Expect = 5e-14
 Identities = 45/218 (20%), Positives = 71/218 (32%), Gaps = 62/218 (28%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDPE--GLFPCILGHEAAGIVESV 78
             +E+     P  G+V +++    +C +D   ++ G+        P   GHE  G V ++
Sbjct: 7   FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVAL 66

Query: 79  GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGK 138
           G GV  +  GD V                                               
Sbjct: 67  GPGVRGLAVGDRVA---------------------------------------------- 80

Query: 139 PIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTGLGAVWNTAKVEPG 195
                +    F++Y +        + P     +      LGC +      V+    +  G
Sbjct: 81  ----GLSGGAFAEYDLADADHAVPL-PSLLDGQAFPGEPLGCAL-----NVFRRGWIRAG 130

Query: 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
             VAV G G +GL   + A AAGA RVI ID  P +  
Sbjct: 131 KTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLA 168

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase

 Score = 69.5 bits (170), Expect = 8e-14
 Identities = 58/202 (28%), Positives = 84/202 (41%), Gaps = 23/202 (11%)

Query: 36  EVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV-IPC 94
           +V +KIL+  +CH+D +T   +     +P + GHE  GIV  +G+ V + + GD V +  
Sbjct: 39  DVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTKLGKNVKKFKEGDRVGVGV 98

Query: 95  YQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYT- 153
               C+ C+ C     N C K         M+      F+ N   I H  GT  +  Y+ 
Sbjct: 99  IVGSCKSCESCDQDLENYCPK---------MI------FTYNS--IGH-DGTKNYGGYSD 140

Query: 154 --VVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVA 211
             VV    V +     PLD    L C   T    +      EPG  + V GLG +G    
Sbjct: 141 MIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAV 200

Query: 212 EGAKAAGASRVIGIDIDPKKFD 233
           +  KA G  +V  I     K D
Sbjct: 201 KIGKAFGL-KVTVISSSSNKED 221

Length = 360

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 68.6 bits (169), Expect = 1e-13
 Identities = 31/70 (44%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81
          L  EDV V  P  GEV ++     +   D Y  SG  P  L P +LG E AG+VE+VG G
Sbjct: 14 LEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPLPL-PFVLGVEGAGVVEAVGPG 72

Query: 82 VTEVQPGDHV 91
          VT  + GD V
Sbjct: 73 VTGFKVGDRV 82

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|234025 TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenase, glutathione-independent

 Score = 68.0 bits (166), Expect = 2e-13
 Identities = 67/206 (32%), Positives = 94/206 (45%), Gaps = 24/206 (11%)

Query: 37  VRIKILFTALCHTDAYTWSGKD--PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPC 94
           V +K++ T +C +D +   G+   P GL   +LGHE  G V   G  V  ++ GD V   
Sbjct: 36  VILKVVTTNICGSDQHMVRGRTTAPTGL---VLGHEITGEVIEKGRDVEFIKIGDIVSVP 92

Query: 95  YQAECRECKFCKSGKTNLCGKVR----GATGAGVMMNDRKSRFSINGKPIYHFMGTSTFS 150
           +   C  C+ CK G T +C  V     GA    V M        + G+  Y  +  + F+
Sbjct: 93  FNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGW-----VGGQSEYVMVPYADFN 147

Query: 151 QYTVV-HDVSVAKIDPQAPLDKVCLLGCGVPTGL-GAVWNTAKVEPGSIVAVFGLGTVGL 208
                  D ++ KI      D   L     PTG  GAV  TA V PGS V + G G VGL
Sbjct: 148 LLKFPDRDQALEKI-----RDLTMLSDI-FPTGYHGAV--TAGVGPGSTVYIAGAGPVGL 199

Query: 209 AVAEGAKAAGASRVIGIDIDPKKFDR 234
           A A  A+  GA+ VI  D++P +  +
Sbjct: 200 AAAASAQLLGAAVVIVGDLNPARLAQ 225

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent [Central intermediary metabolism, One-carbon metabolism]. Length = 393

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 66.1 bits (162), Expect = 6e-13
 Identities = 45/170 (26%), Positives = 60/170 (35%), Gaps = 54/170 (31%)

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
             P   G+ + G V  VG GVT  +PGD V            FC                
Sbjct: 19  PLPLPPGYSSVGRVVEVGSGVTGFKPGDRV------------FC---------------- 50

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
                                  G    ++  VV    +  +    P ++  L      T
Sbjct: 51  ----------------------FGPH--AERVVVPANLLVPLPDGLPPERAALTALA-AT 85

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
            L  V + A+   G  VAV GLG VGL  A+ AKAAGA  V+G+D D  +
Sbjct: 86  ALNGVRD-AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAAR 134

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score = 64.9 bits (159), Expect = 2e-12
 Identities = 57/228 (25%), Positives = 90/228 (39%), Gaps = 51/228 (22%)

Query: 11  KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILG 68
           KA V  +P  P  L + ++ +  P+ G V I++    L  ++ +T  G  P   FP +LG
Sbjct: 2   KAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLG 61

Query: 69  HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
            EA G VE    G     PG  V                           AT  G M   
Sbjct: 62  IEAVGEVEEAPGG--TFTPGQRV---------------------------ATAMGGMG-- 90

Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
                + +G          ++++YT+V +  V  ID      ++  L     T  G+++ 
Sbjct: 91  ----RTFDG----------SYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFR 136

Query: 189 TAKVEPGSIVAVFGLGT--VGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           +  ++PG  + + G GT  VGLA  + AKA GA  V      P++   
Sbjct: 137 SLGLQPGDTLLIRG-GTSSVGLAALKLAKALGA-TVTATTRSPERAAL 182

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase

 Score = 65.2 bits (159), Expect = 2e-12
 Identities = 57/223 (25%), Positives = 85/223 (38%), Gaps = 42/223 (18%)

Query: 20  KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAY---TWSGKDPEGLFPCILGHEAAGIVE 76
             L I+  ++ P    +VR+++    +C +D +   T    D     P ++GHE AGI+E
Sbjct: 27  NTLKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIE 86

Query: 77  SVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSIN 136
            VG  V  +  GD V       C  C  CK G+ NLC                       
Sbjct: 87  EVGSEVKHLVVGDRVALEPGISCWRCNLCKEGRYNLC----------------------- 123

Query: 137 GKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL--------LGCGVPTGLGAVWN 188
             P   F  T           V  A +  + P + V L        L  GV         
Sbjct: 124 --PEMKFFATPPVHGSLANQVVHPADLCFKLP-ENVSLEEGAMCEPLSVGVHA-----CR 175

Query: 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
            A + P + V V G G +GL     A+A GA R++ +D+D ++
Sbjct: 176 RANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDER 218

Length = 364

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 64.1 bits (157), Expect = 4e-12
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 3/89 (3%)

Query: 11 KAAVAWEPNKPLVIEDVQVAPPQ--AGEVRIKILFTALCHTDAYTWSGKDPEGL-FPCIL 67
          KA V      P V E  +V  PQ   G+V +++  + +   D     G        P IL
Sbjct: 2  KALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAIL 61

Query: 68 GHEAAGIVESVGEGVTEVQPGDHVIPCYQ 96
          G + AG+VE+VGEGVT  + GD V  C  
Sbjct: 62 GCDVAGVVEAVGEGVTRFRVGDEVYGCAG 90

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 63.4 bits (155), Expect = 7e-12
 Identities = 50/218 (22%), Positives = 81/218 (37%), Gaps = 53/218 (24%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DPEGLFPCILGHEAAGIVESVGE 80
           L + D+ V  P  GEV +++  + +   D Y  +G        P + G + AG+VE+VGE
Sbjct: 15  LRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGE 74

Query: 81  GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPI 140
           GV  ++ GD V            +  +             G                   
Sbjct: 75  GVDGLKVGDRV------------WLTNLGWG------RRQG------------------- 97

Query: 141 YHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK-VCLLGCGVP--TGLGAVWNTAKVEPGSI 197
                  T ++Y VV    +  +      ++   L   G+P  T   A+++ A  + G  
Sbjct: 98  -------TAAEYVVVPADQLVPLPDGVSFEQGAAL---GIPALTAYRALFHRAGAKAGET 147

Query: 198 VAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           V V G  G VG A  + A+ AGA RVI      +  + 
Sbjct: 148 VLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAEL 184

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase

 Score = 63.0 bits (154), Expect = 1e-11
 Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 15/126 (11%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTD------AYTWSGKDPEGLFP 64
           KA         + + D+    P  GEV ++ L   +C TD       Y  +   P G   
Sbjct: 2   KAIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTA---PPGEDF 58

Query: 65  CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC----GKVRGAT 120
            +LGHEA G+VE VG+G + + PGD V+P  +    +C  C+ G+ + C       RG  
Sbjct: 59  LVLGHEALGVVEEVGDG-SGLSPGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIK 117

Query: 121 GA-GVM 125
           G  G M
Sbjct: 118 GLHGFM 123

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 355

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score = 62.5 bits (152), Expect = 2e-11
 Identities = 55/185 (29%), Positives = 75/185 (40%), Gaps = 18/185 (9%)

Query: 36  EVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV-IPC 94
           +V IK+++  +CHTD +          +P + GHE  G V  VG  V++   GD V +  
Sbjct: 36  DVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGV 95

Query: 95  YQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTV 154
               C EC  CKS     C K   +       ND       +GKP         F+   V
Sbjct: 96  IVGCCGECSPCKSDLEQYCNKRIWS------YND----VYTDGKPT-----QGGFASAMV 140

Query: 155 VHDVSVAKI-DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEG 213
           V    V KI +  AP     LL  GV T    + +    + G    + GLG VG    + 
Sbjct: 141 VDQKFVVKIPEGMAPEQAAPLLCAGV-TVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKI 199

Query: 214 AKAAG 218
           AKA G
Sbjct: 200 AKAMG 204

Length = 357

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 62/248 (25%), Positives = 97/248 (39%), Gaps = 53/248 (21%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG---------KDPEG 61
           +A V   P +   +E+V V  P  GE+ +K+    +C  D   + G         + P  
Sbjct: 2   RAVVCHGP-QDYRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYV 60

Query: 62  LFPCILGHEAAGIVESVGEGVTE--VQPGDHVIPCYQAECRECKFCKSG------KTNLC 113
             P I GHE  G V  +GEG  E  V+ GD VI      C  C+FC  G      K +L 
Sbjct: 61  KPPMIPGHEFVGRVVELGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLY 120

Query: 114 GKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVC 173
           G      G                  +  +M    F +  +VH     K+    P +   
Sbjct: 121 GFQNNVNGG-----------------MAEYM---RFPKEAIVH-----KVPDDIPPEDAI 155

Query: 174 L---LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230
           L   L C     L AV + A ++   +V + G G +GL +   A+     ++I +D+  +
Sbjct: 156 LIEPLACA----LHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDE 210

Query: 231 KFD--REF 236
           +    R+F
Sbjct: 211 RLALARKF 218

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 50/225 (22%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 19  NKPLVIEDVQVAPPQAGEVRIKILFTALCHTD----------AYTWSGKDPEGLF-PCIL 67
           + PLV+ DV    P  G+V +K+L   +C +D               G     L    +L
Sbjct: 8   DGPLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVL 67

Query: 68  GHEAAGIVESVGEGV-TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE  G V   G G   +++ G  V       C +   C  G +        A G     
Sbjct: 68  GHEFCGEVVDYGPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSP------EAPGG---- 117

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
                                 +++Y ++ +  + ++     ++   L    +  GL AV
Sbjct: 118 ----------------------YAEYMLLSEALLLRVPDGLSMEDAALTE-PLAVGLHAV 154

Query: 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
              A++ PG +  V G G +GLAV    KA G   ++  D  P++
Sbjct: 155 -RRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPER 198

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 61.0 bits (149), Expect = 6e-11
 Identities = 51/206 (24%), Positives = 80/206 (38%), Gaps = 36/206 (17%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAY----TWSGKDPEGLFPCILGHEAAGIVES 77
           L + +  V  P  GEV +++   +L + D       +     + L P     + AG V +
Sbjct: 15  LKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPL---SDGAGEVVA 71

Query: 78  VGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSING 137
           VGEGVT  + GD V+P +                L G       A  +         I+G
Sbjct: 72  VGEGVTRFKVGDRVVPTFFP------------NWLDGPPTAEDEASAL------GGPIDG 113

Query: 138 KPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSI 197
                       ++Y V+ +  + +       ++   L C   T   A++    ++PG  
Sbjct: 114 ----------VLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLKPGDT 163

Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVI 223
           V V G G V L   + AKAAGA RVI
Sbjct: 164 VLVQGTGGVSLFALQFAKAAGA-RVI 188

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 7/79 (8%)

Query: 20 KPLVIEDVQVA--PPQAGEVRIKILFTALCHTDAYTWSGK---DPEGLFPCILGHEAAGI 74
           PLV+E V +   PP  GEV +++L   +  +D  T SG     P    P + G+E  G+
Sbjct: 10 LPLVLELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPP--LPAVPGNEGVGV 67

Query: 75 VESVGEGVTEVQPGDHVIP 93
          V  VG GV+ +  G  V+P
Sbjct: 68 VVEVGSGVSGLLVGQRVLP 86

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|176252 cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2

 Score = 57.7 bits (140), Expect = 7e-10
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 17 EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIV 75
          +P   L I +V    P AGEV ++   + + + D +T  G        P I G EA G+V
Sbjct: 11 DPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVV 70

Query: 76 ESVGEGVTEVQPGDHV 91
          ++VGEGV  +Q G  V
Sbjct: 71 DAVGEGVKGLQVGQRV 86

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 51/230 (22%), Positives = 81/230 (35%), Gaps = 64/230 (27%)

Query: 13  AVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAA 72
           A+  +    L +ED+    P  GE  +++L   +C+TD   + G  P   FP + GHE  
Sbjct: 3   ALVLDGGLDLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP---FPGVPGHEFV 59

Query: 73  GIVESVGEG-------VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
           GIVE   E        V E+             C  C++C+ G    C            
Sbjct: 60  GIVEEGPEAELVGKRVVGEI----------NIACGRCEYCRRGLYTHC------------ 97

Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG--- 182
               ++   I  +          F++Y               PL+ + ++   VP     
Sbjct: 98  --PNRTVLGIVDRD-------GAFAEYLT------------LPLENLHVVPDLVPDEQAV 136

Query: 183 ----LGAVWNT---AKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS-RVIG 224
               L A         + PG  VAV G G +GL +A+     G    ++G
Sbjct: 137 FAEPLAAALEILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVG 186

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase

 Score = 56.2 bits (135), Expect = 2e-09
 Identities = 54/185 (29%), Positives = 73/185 (39%), Gaps = 17/185 (9%)

Query: 36  EVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV-IPC 94
           +V +KILF  +CH+D +T         +P I GHE  GI   VG+ VT+ + GD V +  
Sbjct: 33  DVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGV 92

Query: 95  YQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTV 154
               C+ C+ C     N C KV          N R S  + N            +S   V
Sbjct: 93  IIGSCQSCESCNQDLENYCPKVV------FTYNSRSSDGTRN---------QGGYSDVIV 137

Query: 155 VHDVSVAKIDPQAPLDKVCLLGC-GVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEG 213
           V    V  I    P D    L C G+       +     E G  + V GLG +G    + 
Sbjct: 138 VDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKI 197

Query: 214 AKAAG 218
            KA G
Sbjct: 198 GKAFG 202

Length = 375

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 55.3 bits (134), Expect = 5e-09
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 25 EDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL---FPCILGHEAAGIVESVGEG 81
           +V +  P+ GEV +K+   ++   D     G     L   FP I G + AG V +VG G
Sbjct: 17 VEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSG 76

Query: 82 VTEVQPGDHV 91
          VT  + GD V
Sbjct: 77 VTRFKVGDEV 86

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism associated alcohol dehydrogenase

 Score = 54.8 bits (132), Expect = 6e-09
 Identities = 38/175 (21%), Positives = 63/175 (36%), Gaps = 23/175 (13%)

Query: 66  ILGHEAAGIVESVGEGVTE------VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGA 119
           +LGHE  G V ++  G T       ++ G  V+      C  C  C+ G    C  +R  
Sbjct: 1   VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKY 60

Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTV-VHDVSVAKIDPQAPLDKVCLLGCG 178
                                     +  ++++       ++  +    P       GC 
Sbjct: 61  GHE---------ALDSGWPL------SGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCA 105

Query: 179 VPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
             T + A+     ++ G  V V G G +GL  A  A AAGA+RV+  D  P + +
Sbjct: 106 TATVMAALEAAGDLK-GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRE 159

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Length = 280

>gnl|CDD|182701 PRK10754, PRK10754, quinone oxidoreductase, NADPH-dependent; Provisional

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 21 PLVIEDVQVAP--PQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESV 78
          P V++ V+  P  P   EV+++     + + D Y  SG  P    P  LG EAAG+V  V
Sbjct: 13 PEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVSKV 72

Query: 79 GEGVTEVQPGDHVI 92
          G GV  ++ GD V+
Sbjct: 73 GSGVKHIKVGDRVV 86

Length = 327

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 52.6 bits (127), Expect = 4e-08
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG--KDPEGLFPCILGHEAAGIVESVG 79
          L +E   +  P +GEVR+++    L   D     G         P + G E AG VE+VG
Sbjct: 14 LKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKP-PFVPGFECAGTVEAVG 72

Query: 80 EGVTEVQPGDHVI 92
          EGV + + GD V+
Sbjct: 73 EGVKDFKVGDRVM 85

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score = 52.2 bits (126), Expect = 5e-08
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 35 GEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 92
           EV +++    L   D     G  P       LG E +GIV  VG GVT ++ GD V+
Sbjct: 1  DEVEVEVKAAGLNFRDVLVALGLLPGD--ETPLGLECSGIVTRVGSGVTGLKVGDRVM 56

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional

 Score = 51.6 bits (124), Expect = 8e-08
 Identities = 40/179 (22%), Positives = 64/179 (35%), Gaps = 45/179 (25%)

Query: 64  PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAG 123
           P +LGHE  G +       + ++ G  V       C  CK+C S   N C  +R      
Sbjct: 60  PMVLGHEVIGKIVHSDS--SGLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMR------ 111

Query: 124 VMMNDRKSRFSINGKPIYHFMGTST--------FSQYTVVHDVSVAKIDPQAPLDKVCLL 175
                              F G++         F++Y VV          +A  +KV  +
Sbjct: 112 -------------------FFGSAMYFPHVDGGFTRYKVVDTAQCIPYPEKAD-EKV--M 149

Query: 176 GCGVPTGLGAVWNTAKVEPGSI----VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230
               P    AV   A  + G +    V V G+G +G  +    K  GA+ ++  D+ P+
Sbjct: 150 AFAEPL---AVAIHAAHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPR 205

Length = 343

>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members

 Score = 50.2 bits (121), Expect = 2e-07
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 5/86 (5%)

Query: 11 KAAVAWEPNK---PLVIEDVQVAPPQAG--EVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
          KA    +P     P  + D+++  P  G  ++ +++   ++   D    +G  P    P 
Sbjct: 2  KAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPK 61

Query: 66 ILGHEAAGIVESVGEGVTEVQPGDHV 91
          ILG +A+G+VE+VG  VT  + GD V
Sbjct: 62 ILGWDASGVVEAVGSEVTLFKVGDEV 87

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 10 CKAAVAWEPNKPLVIEDVQVA--PPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           KA V  +P   L +   ++    P AGEV +K+    L   D    +   P   +P + 
Sbjct: 1  MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVP 60

Query: 68 GHEAAGIVESVGEGVTEVQPGDHV 91
          G + AG+V +VG  VT  + GD V
Sbjct: 61 GVDGAGVVVAVGAKVTGWKVGDRV 84

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 49.4 bits (119), Expect = 4e-07
 Identities = 32/85 (37%), Positives = 40/85 (47%), Gaps = 5/85 (5%)

Query: 11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCI 66
          KA V  EP  P  L + +V    P  GEV I++    +   D     G    P G    I
Sbjct: 2  KAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASD-I 60

Query: 67 LGHEAAGIVESVGEGVTEVQPGDHV 91
          LG E AG+V +VG GVT  + GD V
Sbjct: 61 LGLEVAGVVVAVGPGVTGWKVGDRV 85

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 24 IEDVQVAPPQAGEVRIKILFTALCHTDA-YTWSGKDPEGLFPCILGHEAAGIVESVGEGV 82
          I DV V  P  GEV +K  F  +  +D  +T    DP    P   G E  G V +VGEGV
Sbjct: 20 IVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGV 79

Query: 83 TEVQPGDHV 91
          T+ + GD V
Sbjct: 80 TDFKVGDAV 88

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|131869 TIGR02822, adh_fam_2, zinc-binding alcohol dehydrogenase family protein

 Score = 49.1 bits (117), Expect = 6e-07
 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 1/98 (1%)

Query: 21  PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGE 80
           PL   +  V  P  GE+ +++    +C TD +   G  P        GHE  G V   G 
Sbjct: 14  PLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPGHEVVGEVAGRGA 73

Query: 81  GVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVR 117
                  GD V I   +  C  C++C+ G  NLC   R
Sbjct: 74  DAGGFAVGDRVGIAWLRRTCGVCRYCRRGAENLCPASR 111

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized [Energy metabolism, Fermentation]. Length = 329

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 16 WEPNKPLVIEDVQVAPPQA-GEVRIKILFTALCHTDAYTWSGKDP-----EGLFPCILGH 69
           EP + L +E  ++ PP    EV +K+L   +   D     G  P         P + G+
Sbjct: 10 GEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGN 69

Query: 70 EAAGIVESVGEGVTEVQPGDHVIP 93
          E  G V  VG GV  ++PGD VIP
Sbjct: 70 EGVGEVVKVGSGVKSLKPGDWVIP 93

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 28 QVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86
          +VAPP  GEVRI++   +L   D     G  P    +P   G EA+G+V +VG  VT + 
Sbjct: 1  EVAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLA 60

Query: 87 PGDHVI 92
           GD VI
Sbjct: 61 VGDEVI 66

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303

>gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 12/87 (13%)

Query: 17  EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC----------- 65
           +P + + +EDV V     GEV + ++   + + + +   G+ P   F             
Sbjct: 25  DPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGE-PVSTFAARQRRGRDEPYH 83

Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVI 92
           I G +A+GIV +VGEGV   + GD V+
Sbjct: 84  IGGSDASGIVWAVGEGVKNWKVGDEVV 110

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 393

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCILGHEAAGIVESVG 79
          L I +     P+  +V IK+    +   D     GK   P G    ILG E AG VE VG
Sbjct: 16 LKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSE-ILGLEVAGYVEDVG 74

Query: 80 EGVTEVQPGDHVI 92
            V   + GD V+
Sbjct: 75 SDVKRFKEGDRVM 87

Length = 334

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 7/75 (9%)

Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAY----TWSGKDPEGLFPCILGHEAAGIVES 77
          L + +  +  P AGEV +K+  + +   D       +  + P    P   G++  G V++
Sbjct: 15 LKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPP---LPFTPGYDLVGRVDA 71

Query: 78 VGEGVTEVQPGDHVI 92
          +G GVT  + GD V 
Sbjct: 72 LGSGVTGFEVGDRVA 86

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score = 43.5 bits (104), Expect = 4e-05
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 67 LGHEAAGIVESVGEGVTEVQPGDHVI 92
          LG E AG+V  VG GVT +  GD V+
Sbjct: 26 LGGECAGVVTRVGPGVTGLAVGDRVM 51

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|188164 TIGR01751, crot-CoA-red, crotonyl-CoA reductase

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 37/175 (21%)

Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVI-PCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
           I+G +A+G+V  VG GVT  + GD V+  C Q +       + G   L  + R       
Sbjct: 80  IIGSDASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPD-GRDGDPMLSSEQR------- 131

Query: 125 MMNDRKSRFSINGKPIYHFMGT-STFSQYTVVHDVSVAKIDPQAPL----DKVCLLGCGV 179
                          I+ +     +F+++ +V D    ++ P+       +  C    G 
Sbjct: 132 ---------------IWGYETNFGSFAEFALVKD---YQLMPKPKHLTWEEAACPGLTG- 172

Query: 180 PTGLGAV--WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK 231
            T    +  WN A V+PG  V ++G  G +G    + A+A G + V  +   P+K
Sbjct: 173 ATAYRQLVGWNPAAVKPGDNVLIWGAAGGLGSYATQLARAGGGNPV-AVVSSPEK 226

The enzyme modelled by This model is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. Length = 398

>gnl|CDD|234024 TIGR02817, adh_fam_1, zinc-binding alcohol dehydrogenase family protein

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 6/85 (7%)

Query: 13 AVAWEPNKPL----VIEDVQVAPPQAGE--VRIKILFTALCHTDAYTWSGKDPEGLFPCI 66
          AV ++   P+     + D+ +  P+ G   + +++   ++   D    +   PE   P I
Sbjct: 2  AVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQPKI 61

Query: 67 LGHEAAGIVESVGEGVTEVQPGDHV 91
          LG +AAG+V +VG+ VT  +PGD V
Sbjct: 62 LGWDAAGVVVAVGDEVTLFKPGDEV 86

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model [Energy metabolism, Fermentation]. Length = 336

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 11 KAAVAWEPNKPLVIEDVQVAPPQ--AGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCI 66
          KA    EP  P V+  V+V  P   AGEV I++    +   D    +GK   P G    I
Sbjct: 2  KAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASD-I 60

Query: 67 LGHEAAGIVESVGEGVTEVQPGDHV 91
          LG E AG V +VGEGV+  + GD V
Sbjct: 61 LGLEVAGEVVAVGEGVSRWKVGDRV 85

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 206 VGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           VGLA  + AKA GA+RVI +D   +K +
Sbjct: 2   VGLAAVQLAKALGAARVIAVDRSEEKLE 29

Length = 131

>gnl|CDD|234094 TIGR03026, NDP-sugDHase, nucleotide sugar dehydrogenase

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           +AV GLG VGL +A      G   V G+DID +K D
Sbjct: 3   IAVIGLGYVGLPLAALLADLGHD-VTGVDIDQEKVD 37

Enzymes in this family catalyze the NAD-dependent alcohol-to-acid oxidation of nucleotide-linked sugars. Examples include UDP-glucose 6-dehydrogenase (1.1.1.22) , GDP-mannose 6-dehydrogenase (1.1.1.132) , UDP-N-acetylglucosamine 6-dehydrogenase (1.1.1.136), UDP-N-acetyl-D-galactosaminuronic acid dehydrogenase and UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase. These enzymes are most often involved in the biosynthesis of polysaccharides and are often found in operons devoted to that purpose. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. Length = 409

>gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 20 KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DPEGLFPCILGHEAAGIVESV 78
          K L + + +V  P  GEV IK+    +  +D     G+       P   G E +G V + 
Sbjct: 16 KELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAA 75

Query: 79 GEGV 82
          G G 
Sbjct: 76 GGGP 79

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|223749 COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           + V GLG VGL +A  A A+   +VIG+DI+ KK D+
Sbjct: 12  IGVIGLGYVGLPLA-AAFASAGFKVIGVDINQKKVDK 47

Length = 436

>gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases

 Score = 37.5 bits (88), Expect = 0.003
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL---FPCILGHEAAGIVESV 78
          L +  + +     G+V I++ +++L + DA   +G    G+   +P   G +AAG V S 
Sbjct: 15 LFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGN--GGVTRNYPHTPGIDAAGTVVSS 72

Query: 79 GEGVTEVQPGDHVI 92
                 + GD V+
Sbjct: 73 --DDPRFREGDEVL 84

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176190 cd05288, PGDH, Prostaglandin dehydrogenases

 Score = 37.5 bits (88), Expect = 0.004
 Identities = 49/216 (22%), Positives = 70/216 (32%), Gaps = 71/216 (32%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAY--TWSGKDPEGLFPCILGH--EAAGI--- 74
             + +V +   + GEV ++ L+ ++   D Y   W         P  LG      G+   
Sbjct: 20  FELVEVPLPELKDGEVLVRTLYLSV---DPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEV 76

Query: 75  VESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFS 134
           VES        + GD V                                           
Sbjct: 77  VESRSPD---FKVGDLV------------------------------------------- 90

Query: 135 INGKPIYHFMGTSTFSQYTVVHDVS-VAKIDPQAPLDKVCLLG-CGVP--TGLGAVWNTA 190
                   F+G   + +Y VV   S + K+DP   L     LG  G+   T    +    
Sbjct: 91  ------SGFLG---WQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIG 141

Query: 191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI 225
           K +PG  V V    G VG  V + AK  GA RV+GI
Sbjct: 142 KPKPGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGI 176

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	239
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	100.0
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	100.0
PLN02740	381	Alcohol dehydrogenase-like	100.0
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	100.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	100.0
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	100.0
PLN02827	378	Alcohol dehydrogenase-like	100.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	100.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	100.0
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	100.0
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	100.0
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	100.0
PLN02514	357	cinnamyl-alcohol dehydrogenase	100.0
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	100.0
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	100.0
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	100.0
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	100.0
PRK10083	339	putative oxidoreductase; Provisional	100.0
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	100.0
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	100.0
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	100.0
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	100.0
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	100.0
PRK13771	334	putative alcohol dehydrogenase; Provisional	99.97
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	99.97
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	99.97
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	99.97
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	99.97
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	99.97
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	99.97
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	99.97
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	99.97
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	99.97
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	99.97
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	99.97
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	99.97
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	99.97
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	99.97
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.97
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	99.97
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	99.97
PLN02702	364	L-idonate 5-dehydrogenase	99.97
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	99.97
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.97
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	99.97
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.97
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.96
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	99.96
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.96
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.96
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.96
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.96
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.96
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	99.96
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.96
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.96
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.96
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.96
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	99.96
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.96
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	99.96
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	99.96
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.95
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	99.95
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.95
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.95
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.95
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	99.95
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	99.94
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.94
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	99.94
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	99.94
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.94
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	99.93
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.93
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.93
PTZ00354	334	alcohol dehydrogenase; Provisional	99.93
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	99.93
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.93
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.93
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	99.93
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.93
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.93
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	99.93
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.93
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.93
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.93
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.92
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.92
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.92
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.92
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.91
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.91
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.91
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.91
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.91
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.9
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.9
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.9
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.89
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.89
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.89
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.89
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.88
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.88
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.87
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	99.87
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.87
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.85
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.85
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.83
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.83
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.73
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.57
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.57
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.55
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.16
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.01
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.98
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.96
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	96.92
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	96.53
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.26
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.14
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.1
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	95.93
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	95.84
PF13823	23	ADH_N_assoc: Alcohol dehydrogenase GroES-associate	95.7
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	95.67
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.66
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	95.63
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.55
PLN02494	477	adenosylhomocysteinase	95.55
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	95.47
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	95.37
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	95.35
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	95.31
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	95.24
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	94.82
PRK08324	681	short chain dehydrogenase; Validated	94.78
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	94.5
PRK12548	289	shikimate 5-dehydrogenase; Provisional	94.47
PLN03209	576	translocon at the inner envelope of chloroplast su	94.34
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	94.25
PLN02780	320	ketoreductase/ oxidoreductase	94.01
PRK07831	262	short chain dehydrogenase; Provisional	93.9
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	93.76
PRK13940	414	glutamyl-tRNA reductase; Provisional	93.68
PRK05866	293	short chain dehydrogenase; Provisional	93.67
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	93.62
PTZ00075	476	Adenosylhomocysteinase; Provisional	93.52
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	93.43
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	93.34
PRK06196	315	oxidoreductase; Provisional	93.23
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	93.11
PRK04148	134	hypothetical protein; Provisional	93.03
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	92.72
PRK06197	306	short chain dehydrogenase; Provisional	92.7
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	92.16
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	91.96
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	91.89
PLN02253	280	xanthoxin dehydrogenase	91.76
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	91.63
PLN00203	519	glutamyl-tRNA reductase	91.61
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	91.51
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	91.28
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	91.21
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	90.91
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	90.84
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	90.67
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	90.58
PRK06484	520	short chain dehydrogenase; Validated	90.53
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	90.27
PRK06720	169	hypothetical protein; Provisional	90.02
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	90.01
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	89.9
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	89.78
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	89.77
PRK14982	340	acyl-ACP reductase; Provisional	89.66
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	89.39
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	89.17
KOG1208	314	consensus Dehydrogenases with different specificit	89.11
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	89.1
PRK08328	231	hypothetical protein; Provisional	88.89
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	88.84
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	88.78
PLN02686	367	cinnamoyl-CoA reductase	88.69
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	88.67
PLN02928	347	oxidoreductase family protein	88.4
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	88.1
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	88.06
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	87.6
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	87.48
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	87.22
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	87.18
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	87.16
PRK10669	558	putative cation:proton antiport protein; Provision	86.98
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	86.81
PRK07201	657	short chain dehydrogenase; Provisional	86.67
PRK06719	157	precorrin-2 dehydrogenase; Validated	86.64
PRK05855	582	short chain dehydrogenase; Validated	86.54
PRK14967	223	putative methyltransferase; Provisional	86.54
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	86.5
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	86.48
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	86.23
PRK13243	333	glyoxylate reductase; Reviewed	86.19
PRK07985	294	oxidoreductase; Provisional	86.03
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	85.86
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	85.86
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	85.71
PRK06128	300	oxidoreductase; Provisional	85.67
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	85.58
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	85.57
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	85.5
PRK06701	290	short chain dehydrogenase; Provisional	85.39
PRK07574	385	formate dehydrogenase; Provisional	85.3
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	85.29
PRK06436	303	glycerate dehydrogenase; Provisional	85.15
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	85.05
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	85.01
PRK09496	453	trkA potassium transporter peripheral membrane com	84.99
PRK06932	314	glycerate dehydrogenase; Provisional	84.87
PRK12831	464	putative oxidoreductase; Provisional	84.8
PRK03562	621	glutathione-regulated potassium-efflux system prot	84.8
PRK12480	330	D-lactate dehydrogenase; Provisional	84.63
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	84.61
PRK06487	317	glycerate dehydrogenase; Provisional	84.51
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	84.39
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	84.17
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	84.15
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	84.08
PRK12814	652	putative NADPH-dependent glutamate synthase small	84.02
PLN03139	386	formate dehydrogenase; Provisional	83.99
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	83.97
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	83.96
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	83.94
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	83.9
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	83.89
PRK14031	444	glutamate dehydrogenase; Provisional	83.87
PRK00811	283	spermidine synthase; Provisional	83.8
PRK06141	314	ornithine cyclodeaminase; Validated	83.46
PRK07340	304	ornithine cyclodeaminase; Validated	83.37
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	83.36
PRK08618	325	ornithine cyclodeaminase; Validated	83.28
PRK03659	601	glutathione-regulated potassium-efflux system prot	83.22
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	83.11
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	83.09
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	82.94
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	82.74
PRK08223	287	hypothetical protein; Validated	82.71
PRK13984	604	putative oxidoreductase; Provisional	82.57
PRK15116	268	sulfur acceptor protein CsdL; Provisional	82.39
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	82.31
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	82.17
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	82.15
PLN02695	370	GDP-D-mannose-3',5'-epimerase	81.87
PRK08291	330	ectoine utilization protein EutC; Validated	81.78
PRK14030	445	glutamate dehydrogenase; Provisional	81.78
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	81.77
PF00289	110	CPSase_L_chain: Carbamoyl-phosphate synthase L cha	81.69
PRK08317	241	hypothetical protein; Provisional	81.62
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	81.58
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	81.25
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	81.22
PTZ00414	100	10 kDa heat shock protein; Provisional	81.11
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	81.05
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	80.99
PRK12779	944	putative bifunctional glutamate synthase subunit b	80.79
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	80.77
PLN02206	442	UDP-glucuronate decarboxylase	80.7
PLN02366	308	spermidine synthase	80.67
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	80.56
PLN02572	442	UDP-sulfoquinovose synthase	80.54
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	80.41
PRK12770	352	putative glutamate synthase subunit beta; Provisio	80.38

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=1.1e-49  Score=343.52  Aligned_cols=208  Identities=38%  Similarity=0.540  Sum_probs=197.8

Q ss_pred             ccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414            7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (239)
Q Consensus         7 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~   86 (239)
                      +++|||+++++.+++++++|++.|+|+++||+|+|+++|||++|++.+.|.++...+|.++|||.+|+|+++|++|+.|+
T Consensus         1 ~~~mkA~~~~~~~~pl~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~~~P~ipGHEivG~V~~vG~~V~~~k   80 (339)
T COG1064           1 MMTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIPGHEIVGTVVEVGEGVTGLK   80 (339)
T ss_pred             CcceEEEEEccCCCCceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCCCCCCccCCcceEEEEEEecCCCccCC
Confidence            46899999999999999999999999999999999999999999999999998888999999999999999999999999


Q ss_pred             CCCEEee-cCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCC
Q 026414           87 PGDHVIP-CYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (239)
Q Consensus        87 ~Gd~V~~-~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~  165 (239)
                      +||||.+ +...+|++|.+|++++.+.|++...   .|+. .+|                  +|+||+++|+.+++++|+
T Consensus        81 ~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~---~gy~-~~G------------------Gyaeyv~v~~~~~~~iP~  138 (339)
T COG1064          81 VGDRVGVGWLVISCGECEYCRSGNENLCPNQKI---TGYT-TDG------------------GYAEYVVVPARYVVKIPE  138 (339)
T ss_pred             CCCEEEecCccCCCCCCccccCcccccCCCccc---ccee-ecC------------------cceeEEEEchHHeEECCC
Confidence            9999999 9999999999999999999998665   5666 666                  999999999999999999


Q ss_pred             CCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      ++++++||.+.|+..|.|+++ ...+++||++|+|.|.|++|++|+|+|+++|+ +|++++++++|+++++++
T Consensus       139 ~~d~~~aApllCaGiT~y~al-k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~l  209 (339)
T COG1064         139 GLDLAEAAPLLCAGITTYRAL-KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKL  209 (339)
T ss_pred             CCChhhhhhhhcCeeeEeeeh-hhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHh
Confidence            999999999999999999987 56999999999999999999999999999997 999999999999998764

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=2.1e-47  Score=324.21  Aligned_cols=229  Identities=62%  Similarity=1.060  Sum_probs=222.9

Q ss_pred             cceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (239)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~   87 (239)
                      +++||.+..++++||+++|+++++|++||||||+.++|+||+|...++|..+.. +|.++|||++|+|+++|++|+.+++
T Consensus         1 mk~~aAV~~~~~~Pl~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~~-~P~vLGHEgAGiVe~VG~gVt~vkp   79 (366)
T COG1062           1 MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEG-FPAVLGHEGAGIVEAVGEGVTSVKP   79 (366)
T ss_pred             CCceEeeeecCCCCeEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCCC-CceecccccccEEEEecCCccccCC
Confidence            468999999999999999999999999999999999999999999999998886 9999999999999999999999999


Q ss_pred             CCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCC
Q 026414           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (239)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~  167 (239)
                      ||+|+.....+|++|.+|.+++++.|...+.....|.. .||++|.+.++.+++++++.++|++|.++++.++++++++.
T Consensus        80 GDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m-~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~  158 (366)
T COG1062          80 GDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTM-PDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDA  158 (366)
T ss_pred             CCEEEEcccCCCCCCchhhCCCcccccchhhhcccccc-cCCceeeecCCcceeeeeccccchhheeecccceEECCCCC
Confidence            99999999999999999999999999999998889976 99999999999999999999999999999999999999999


Q ss_pred             CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      +++.++++.|..+|.+.++.+..++++|++|.|.|.|.+|++++|-|+..|+.++|++|.+++|++++++|
T Consensus       159 p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f  229 (366)
T COG1062         159 PLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF  229 (366)
T ss_pred             CccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999865

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.4e-47  Score=318.61  Aligned_cols=234  Identities=76%  Similarity=1.248  Sum_probs=227.7

Q ss_pred             CcccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCC
Q 026414            5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE   84 (239)
Q Consensus         5 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~   84 (239)
                      ..+.+|||.+.+++++||.++|+..++|+.+||+||++++++|++|...++|..+...||.++|||++|+|+++|++|++
T Consensus         3 gkvI~CKAAV~w~a~~PL~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~~~fP~IlGHEaaGIVESvGegV~~   82 (375)
T KOG0022|consen    3 GKVITCKAAVAWEAGKPLVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPEGLFPVILGHEAAGIVESVGEGVTT   82 (375)
T ss_pred             CCceEEeEeeeccCCCCeeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCccccCceEecccceeEEEEecCCccc
Confidence            56789999999999999999999999999999999999999999999999999888899999999999999999999999


Q ss_pred             CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (239)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p  164 (239)
                      +++||+|+......|+.|.+|.++..|.|..++.....+....||.+|+.-+|+.+|||++..+|+||.++++..+++|+
T Consensus        83 vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~kId  162 (375)
T KOG0022|consen   83 VKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAKID  162 (375)
T ss_pred             cCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeEecC
Confidence            99999999999999999999999999999999999888888789999999999999999999999999999999999999


Q ss_pred             CCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      +..+.+.++.+.|.+.|+|.|+.+.+++++|+++.|+|.|.+|+++++-+|+.|++++|++|.+++|.++++++
T Consensus       163 ~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f  236 (375)
T KOG0022|consen  163 PSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF  236 (375)
T ss_pred             CCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998764

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=8.1e-43  Score=293.40  Aligned_cols=218  Identities=31%  Similarity=0.496  Sum_probs=194.3

Q ss_pred             CCCCCcccceeEEEEecCCC--CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEe
Q 026414            1 MSTEGQVITCKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESV   78 (239)
Q Consensus         1 m~~~~~~~~~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~v   78 (239)
                      |+++..|.+++++.+..++.  ++++.+++.|+|+++||+|+++++|||++|++.+.|..+...+|.++|||.+|+|+++
T Consensus         1 ~~~~~~p~k~~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~s~~PlV~GHEiaG~Vvkv   80 (360)
T KOG0023|consen    1 MSSMSIPEKQFGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGLSKYPLVPGHEIAGVVVKV   80 (360)
T ss_pred             CCcccCchhhEEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCcccCCccCCceeeEEEEEE
Confidence            77788999999999999888  5777999999999999999999999999999999999888899999999999999999


Q ss_pred             CCCCCCCCCCCEE-eecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEec
Q 026414           79 GEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD  157 (239)
Q Consensus        79 G~~v~~~~~Gd~V-~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  157 (239)
                      |++|+.|++|||| +.+...+|..|.+|.++..+.|++.-.. ..|.. .||             ....|+|++|+++++
T Consensus        81 Gs~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t-~~g~~-~DG-------------t~~~ggf~~~~~v~~  145 (360)
T KOG0023|consen   81 GSNVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFT-YNGVY-HDG-------------TITQGGFQEYAVVDE  145 (360)
T ss_pred             CCCcccccccCeeeeeEEeccccCccccccCCcccCCceeEe-ccccc-cCC-------------CCccCccceeEEEee
Confidence            9999999999999 4566779999999999999999953321 12222 444             666779999999999


Q ss_pred             ceeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       158 ~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .++++||++++.++||.+.|+..|+|.++ .+.+++||.++-|.|+|++|.+++|+||++|. +|+++++++.|.+.+
T Consensus       146 ~~a~kIP~~~pl~~aAPlLCaGITvYspL-k~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~kkeea  221 (360)
T KOG0023|consen  146 VFAIKIPENLPLASAAPLLCAGITVYSPL-KRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSKKKEEA  221 (360)
T ss_pred             eeEEECCCCCChhhccchhhcceEEeehh-HHcCCCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCchhHHHH
Confidence            99999999999999999999999999977 77888899999999997799999999999999 999999998444443

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=5.4e-42  Score=289.00  Aligned_cols=207  Identities=29%  Similarity=0.409  Sum_probs=190.3

Q ss_pred             cceeEEEEecCCCCeEEEeecCCCC-CCCeEEEEEeEeeechhhhhhhcCCCCCC---CCCeeeeeeEEEEEEEeCCCCC
Q 026414            8 ITCKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEG---LFPCILGHEAAGIVESVGEGVT   83 (239)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~---~~p~~~G~e~vG~Vv~vG~~v~   83 (239)
                      .+|+|+++.++++ +++++.|.|++ .|+||+|++.++|||++|++.+.......   +.|.++|||.+|+|.++|++|+
T Consensus         3 ~~~~A~vl~g~~d-i~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk   81 (354)
T KOG0024|consen    3 ADNLALVLRGKGD-IRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVK   81 (354)
T ss_pred             cccceeEEEccCc-eeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccccc
Confidence            5899999999999 99999999987 99999999999999999999987664333   5899999999999999999999


Q ss_pred             CCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEec
Q 026414           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (239)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  163 (239)
                      ++++||||++.|..+|+.|++|++++.|.|++...-   +.-..||                  ++++|++.++++++++
T Consensus        82 ~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~---atpp~~G------------------~la~y~~~~~dfc~KL  140 (354)
T KOG0024|consen   82 HLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFC---ATPPVDG------------------TLAEYYVHPADFCYKL  140 (354)
T ss_pred             ccccCCeEEecCCCccccchhhhCcccccCCccccc---cCCCcCC------------------ceEEEEEechHheeeC
Confidence            999999999999999999999999999999986652   2222445                  9999999999999999


Q ss_pred             CCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      ||+++++++|++. +++++++|. .++.+++|++|||+|+|++|+++...||++|+.+|++++-.++|+++|+++
T Consensus       141 Pd~vs~eeGAl~e-PLsV~~HAc-r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~  213 (354)
T KOG0024|consen  141 PDNVSFEEGALIE-PLSVGVHAC-RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF  213 (354)
T ss_pred             CCCCchhhccccc-chhhhhhhh-hhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh
Confidence            9999999999987 688999976 899999999999999999999999999999999999999999999999874

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=100.00  E-value=3.3e-39  Score=286.79  Aligned_cols=227  Identities=65%  Similarity=1.095  Sum_probs=193.5

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd   89 (239)
                      ||++++...+++++++++|.|+|+++||+|||++++||++|++.+.|..+...+|.++|||++|+|+++|+++++|++||
T Consensus         2 ~~a~~~~~~~~~l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd   81 (368)
T TIGR02818         2 SRAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHEGAGIVEAVGEGVTSVKVGD   81 (368)
T ss_pred             ceEEEEecCCCCeEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCCCCCCeeeccccEEEEEEECCCCccCCCCC
Confidence            89999998888899999999999999999999999999999999988765556799999999999999999999999999


Q ss_pred             EEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCc
Q 026414           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (239)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~  169 (239)
                      ||++.+..+|++|.+|..++.+.|.+.......|+. .+|..++...|...++..+.|+|+||+.+|.+.++++|+++++
T Consensus        82 rV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l~~  160 (368)
T TIGR02818        82 HVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLM-PDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPL  160 (368)
T ss_pred             EEEEcCCCCCCCChhhhCCCcccccCcccccccccc-cCCccccccCCCcccccccCccceeeEEechhheEECCCCCCH
Confidence            999999999999999999999999875432223332 2221122112211122223469999999999999999999999


Q ss_pred             hhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++++.+.+++.|+|+++....++++|++|||+|+|++|++++|+|+++|+.+|++++.+++|++++++
T Consensus       161 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~  228 (368)
T TIGR02818       161 EEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK  228 (368)
T ss_pred             HHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            99999999999999988788899999999999999999999999999998779999999999888754

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=100.00  E-value=1.1e-38  Score=283.24  Aligned_cols=230  Identities=70%  Similarity=1.186  Sum_probs=196.7

Q ss_pred             cceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (239)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~   87 (239)
                      ++|||+++.+.+++++++++|.|+|+++||+||+.+++||++|++.+.|..+...+|.++|||++|+|+++|+++++|++
T Consensus         1 ~~~ka~~~~~~~~~~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~   80 (369)
T cd08301           1 ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRILGHEAAGIVESVGEGVTDLKP   80 (369)
T ss_pred             CccEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCCCCCCcccccccceEEEEeCCCCCcccc
Confidence            37999999988888999999999999999999999999999999999887655567899999999999999999999999


Q ss_pred             CCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCC
Q 026414           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (239)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~  167 (239)
                      ||||++.+..+|++|.+|..+..+.|.+.......|....++..++...|...+++...|+|+||+.++...++++|+++
T Consensus        81 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~~  160 (369)
T cd08301          81 GDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPEA  160 (369)
T ss_pred             CCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEEEecccEEECCCCC
Confidence            99999999999999999999999999976432222222112212222223334444456799999999999999999999


Q ss_pred             CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++++++.+.+++.|+|+++....++++|++|||+|+|++|++++|+++++|+.+|++++++++|++++++
T Consensus       161 ~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~  230 (369)
T cd08301         161 PLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK  230 (369)
T ss_pred             CHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            9999999999999999988788899999999999999999999999999998779999999999888754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PLN02740 Alcohol dehydrogenase-like

Probab=100.00  E-value=1.4e-38  Score=283.99  Aligned_cols=233  Identities=61%  Similarity=1.096  Sum_probs=193.7

Q ss_pred             CcccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC-CCCCCeeeeeeEEEEEEEeCCCCC
Q 026414            5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVT   83 (239)
Q Consensus         5 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~vG~Vv~vG~~v~   83 (239)
                      ++|.+||++++++++++++++|+|.|.|+++||+|||++++||++|++.+.|... ...+|.++|||++|+|+++|++++
T Consensus         6 ~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~   85 (381)
T PLN02740          6 GKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEGVE   85 (381)
T ss_pred             ccceeeEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCCCC
Confidence            4678999999999988899999999999999999999999999999999988653 235789999999999999999999


Q ss_pred             CCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCcccccc--CCcceeeecCCcceeeeEEEecceeE
Q 026414           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSI--NGKPIYHFMGTSTFSQYTVVHDVSVA  161 (239)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~  161 (239)
                      .|++||||++.+..+|++|.+|..+..+.|.+.......+....+|..+++.  .+...+++...|+|+||+.+|...++
T Consensus        86 ~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~  165 (381)
T PLN02740         86 DLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVV  165 (381)
T ss_pred             cCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehHHeE
Confidence            9999999999999999999999999999999765321100000011000000  00111222234699999999999999


Q ss_pred             ecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       162 ~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++|+++++++++.+.+++.|+|+++....++++|++|||+|+|++|++++|+|+++|+.+|++++++++|++++++
T Consensus       166 ~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~  241 (381)
T PLN02740        166 KIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE  241 (381)
T ss_pred             ECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence            9999999999999999999999988788899999999999999999999999999998679999999999988764

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=100.00  E-value=1.8e-38  Score=281.94  Aligned_cols=229  Identities=77%  Similarity=1.257  Sum_probs=196.5

Q ss_pred             cceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (239)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~   87 (239)
                      .+||++++...+++++++++|.|.|+++||+|||++++||++|++.+.|..+...+|.++|||++|+|+++|+++++|++
T Consensus         1 ~~~~a~~~~~~~~~~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~v   80 (368)
T cd08300           1 ITCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVILGHEGAGIVESVGEGVTSVKP   80 (368)
T ss_pred             CcceEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCccCCCCceeccceeEEEEEeCCCCccCCC
Confidence            37899999988888999999999999999999999999999999999887655578999999999999999999999999


Q ss_pred             CCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCC
Q 026414           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (239)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~  167 (239)
                      ||+|++.+..+|+.|.+|++++++.|.+.......|.. .+|..++..+|.+.++..+.|+|+||+.++...++++|+++
T Consensus        81 GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l  159 (368)
T cd08300          81 GDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLM-PDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEA  159 (368)
T ss_pred             CCEEEEcCCCCCCCChhhcCCCcCcCCCcccccccccc-CCCccccccCCcccccccccccceeEEEEchhceEeCCCCC
Confidence            99999999999999999999999999875432112222 22222222233344444456799999999999999999999


Q ss_pred             CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++++++.+.+++.|+|+++....++++|++|||+|+|++|++++|+|+++|+.+|++++++++|++.+++
T Consensus       160 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~  229 (368)
T cd08300         160 PLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK  229 (368)
T ss_pred             ChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            9999999999999999988788889999999999999999999999999998779999999999988754

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=100.00  E-value=1.2e-37  Score=276.98  Aligned_cols=226  Identities=46%  Similarity=0.768  Sum_probs=188.4

Q ss_pred             eeEEEEecCC--------CCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCC
Q 026414           10 CKAAVAWEPN--------KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG   81 (239)
Q Consensus        10 ~~a~~~~~~~--------~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~   81 (239)
                      |||+++.+.+        +.++++++|.|+|+++||+|||.+++||++|++.+.|..+. .+|.++|||++|+|+++|++
T Consensus         1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~~-~~p~i~GhE~~G~V~~vG~~   79 (371)
T cd08281           1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPR-PLPMALGHEAAGVVVEVGEG   79 (371)
T ss_pred             CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCCC-CCCccCCccceeEEEEeCCC
Confidence            7899998765        34999999999999999999999999999999999886543 57899999999999999999


Q ss_pred             CCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeE
Q 026414           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA  161 (239)
Q Consensus        82 v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  161 (239)
                      +++|++||+|++.+...|++|.+|+.++.+.|.+.......|.. .+|...+..++....+..+.|+|++|+.++...++
T Consensus        80 v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~~~  158 (371)
T cd08281          80 VTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTL-LSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVV  158 (371)
T ss_pred             CCcCCCCCEEEEccCCCCCCCccccCCCcccccCcccccccccc-ccCcccccccCcccccccCcccceeeEEecccceE
Confidence            99999999999988889999999999999999876543223322 11111111111111111223699999999999999


Q ss_pred             ecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       162 ~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++|+++++++|+.+.+++.|||+++....++++|++|||.|+|++|++++|+++++|+++|++++++++|++++++
T Consensus       159 ~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~  234 (371)
T cd08281         159 KIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE  234 (371)
T ss_pred             ECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence            9999999999999998999999988788889999999999999999999999999999779999999999988764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=100.00  E-value=9.7e-37  Score=270.56  Aligned_cols=227  Identities=65%  Similarity=1.101  Sum_probs=194.8

Q ss_pred             cceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (239)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~   87 (239)
                      ++|||+++.+.+++++++++|.|.++++||+||++++++|++|++.+.|..+ ..+|.++|||++|+|+++|++++++++
T Consensus         1 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~   79 (365)
T cd08277           1 IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA-TLFPVILGHEGAGIVESVGEGVTNLKP   79 (365)
T ss_pred             CccEEEEEccCCCCcEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC-CCCCeecccceeEEEEeeCCCCccCCC
Confidence            4689999998887799999999999999999999999999999999988654 467899999999999999999999999


Q ss_pred             CCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCC
Q 026414           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (239)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~  167 (239)
                      ||+|+..+...|++|.+|..+..+.|.+.... ..|.. .++.......|+..+++.+.|+|++|+.++...++++|+++
T Consensus        80 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~-~~g~~-~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l  157 (365)
T cd08277          80 GDKVIPLFIGQCGECSNCRSGKTNLCQKYRAN-ESGLM-PDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAA  157 (365)
T ss_pred             CCEEEECCCCCCCCCchhcCcCcccCcCcccc-ccccc-cCCccccccCCcccccccccccceeeEEEchhheEECCCCC
Confidence            99999999999999999999999999875432 22332 33322222233333434445799999999999999999999


Q ss_pred             CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++++++.+.+++.|||+++....++++|++|||+|+|++|++++++++++|+.+|++++++++|++.+++
T Consensus       158 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~  227 (365)
T cd08277         158 PLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE  227 (365)
T ss_pred             CHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            9999999999999999988788889999999999999999999999999998779999999999888754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PLN02827 Alcohol dehydrogenase-like

Probab=100.00  E-value=1.5e-36  Score=270.64  Aligned_cols=226  Identities=55%  Similarity=1.022  Sum_probs=185.4

Q ss_pred             cceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (239)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~   87 (239)
                      ..||++++.++++.++++|+|.|.|+++||+|||++++||++|++.+.+..   .+|.++|||++|+|+++|+++++|++
T Consensus        11 ~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~---~~p~i~GhE~~G~V~~vG~~v~~~~~   87 (378)
T PLN02827         11 ITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA---LFPRIFGHEASGIVESIGEGVTEFEK   87 (378)
T ss_pred             ceeEEEEEecCCCCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC---CCCeeecccceEEEEEcCCCCcccCC
Confidence            679999999988779999999999999999999999999999999887642   46789999999999999999999999


Q ss_pred             CCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCC
Q 026414           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (239)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~  167 (239)
                      ||+|++.+..+|++|.+|.++.++.|.+.... ..|....+...++...|...+++...|+|+||+.+|...++++|+++
T Consensus        88 GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~~~~~~iP~~l  166 (378)
T PLN02827         88 GDHVLTVFTGECGSCRHCISGKSNMCQVLGLE-RKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLA  166 (378)
T ss_pred             CCEEEEecCCCCCCChhhhCcCcccccCcccc-ccccccCCCcccccccCcccccccccccceeeEEechhheEECCCCC
Confidence            99999999999999999999999999864321 11111000000000001111111123699999999999999999999


Q ss_pred             CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++++++.+.+++.++|+++....++++|++|||+|+|++|++++|+++++|+..|++++++++|++++++
T Consensus       167 ~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~  236 (378)
T PLN02827        167 PLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT  236 (378)
T ss_pred             CHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            9999999988888999877677889999999999999999999999999998678889989999888754

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=100.00  E-value=1.3e-36  Score=266.63  Aligned_cols=205  Identities=29%  Similarity=0.459  Sum_probs=182.4

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQPG   88 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~~G   88 (239)
                      |||+++.+++. ++++++|.|+|+++||+||+.+++||++|++.+.+.+.. ..+|.++|||++|+|+++|+++++|++|
T Consensus         1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   79 (339)
T cd08239           1 MRGAVFPGDRT-VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFRVG   79 (339)
T ss_pred             CeEEEEecCCc-eEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCCCC
Confidence            79999998776 999999999999999999999999999999988765432 2357899999999999999999999999


Q ss_pred             CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCC
Q 026414           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (239)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~  168 (239)
                      |+|++.+...|++|.+|..++++.|.+...  ..|.. .+|                  +|++|+.+|...++++|++++
T Consensus        80 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~--~~g~~-~~G------------------~~ae~~~v~~~~~~~~P~~~~  138 (339)
T cd08239          80 DRVMVYHYVGCGACRNCRRGWMQLCTSKRA--AYGWN-RDG------------------GHAEYMLVPEKTLIPLPDDLS  138 (339)
T ss_pred             CEEEECCCCCCCCChhhhCcCcccCcCccc--ccccC-CCC------------------cceeEEEechHHeEECCCCCC
Confidence            999999999999999999999999986543  12322 233                  999999999999999999999


Q ss_pred             chhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++++.+.+++.|||+++ ....+++|++|||+|+|.+|++++|+++++|+++|++++++++|++++++
T Consensus       139 ~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~  206 (339)
T cd08239         139 FADGALLLCGIGTAYHAL-RRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA  206 (339)
T ss_pred             HHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            999999999999999977 66788999999999999999999999999999559999999999888754

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=100.00  E-value=1.8e-36  Score=268.06  Aligned_cols=219  Identities=41%  Similarity=0.662  Sum_probs=186.8

Q ss_pred             ceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414            9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (239)
Q Consensus         9 ~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G   88 (239)
                      |||++++++++++++++|+|.|+|+++||+|||.+++||++|++.+.|..+. .+|.++|||++|+|+++|+++++|++|
T Consensus         1 ~mka~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~~-~~p~i~G~e~~G~V~~vG~~v~~~~~G   79 (358)
T TIGR03451         1 TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIND-EFPFLLGHEAAGVVEAVGEGVTDVAPG   79 (358)
T ss_pred             CcEEEEEccCCCCCEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCccc-cCCcccccceEEEEEEeCCCCcccCCC
Confidence            6999999999988999999999999999999999999999999998886432 578899999999999999999999999


Q ss_pred             CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCC
Q 026414           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (239)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~  168 (239)
                      |+|++.+...|+.|.+|..++.+.|.+..... ......+|        .........|+|+||+.+|...++++|++++
T Consensus        80 drV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~-~~~~~~~g--------~~~~~~~~~G~~aey~~v~~~~~~~ip~~~~  150 (358)
T TIGR03451        80 DYVVLNWRAVCGQCRACKRGRPWYCFDTHNAT-QKMTLTDG--------TELSPALGIGAFAEKTLVHAGQCTKVDPAAD  150 (358)
T ss_pred             CEEEEccCCCCCCChHHhCcCcccCcCccccc-cccccccC--------cccccccccccccceEEEehhheEECCCCCC
Confidence            99999999999999999999999998532110 00000001        0000011235999999999999999999999


Q ss_pred             chhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++++.+.+++.++|+++....++++|++|||+|+|++|++++|+|+++|+++|++++++++|++++++
T Consensus       151 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~  219 (358)
T TIGR03451       151 PAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE  219 (358)
T ss_pred             hhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            999999999999999887778889999999999999999999999999999679999999999988764

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=100.00  E-value=2.7e-36  Score=270.24  Aligned_cols=212  Identities=28%  Similarity=0.399  Sum_probs=175.8

Q ss_pred             ceeEEEEecCCCCeEEEeecCCCCC-------CCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCC
Q 026414            9 TCKAAVAWEPNKPLVIEDVQVAPPQ-------AGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG   81 (239)
Q Consensus         9 ~~~a~~~~~~~~~~~~~~~~~p~~~-------~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~   81 (239)
                      -|||+++.++++ ++++|+|.|+|+       +|||||||+++|||++|++.+.|..+ ..+|.++|||++|+|+++|++
T Consensus         2 ~mka~v~~~~~~-~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~-~~~p~i~GhE~~G~V~~vG~~   79 (393)
T TIGR02819         2 GNRGVVYLGPGK-VEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTT-APTGLVLGHEITGEVIEKGRD   79 (393)
T ss_pred             CceEEEEecCCc-eeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCC-CCCCccccceeEEEEEEEcCc
Confidence            489999999887 999999999874       68999999999999999999988653 257899999999999999999


Q ss_pred             CCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCC---CCceeccCCccccccCCcceeeecCCcceeeeEEEecc
Q 026414           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT---GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV  158 (239)
Q Consensus        82 v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~---~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  158 (239)
                      +++|++||||++.+...|++|.+|++++.+.|.+.....   ..|+... |              ...|+|+||+.+|..
T Consensus        80 V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~-~--------------~~~G~~aey~~v~~~  144 (393)
T TIGR02819        80 VEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDM-G--------------GWVGGQSEYVMVPYA  144 (393)
T ss_pred             cccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceeccccc-C--------------CCCCceEEEEEechh
Confidence            999999999999999999999999999999999643110   0111000 0              012499999999963


Q ss_pred             --eeEecCCCCCc----hhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 026414          159 --SVAKIDPQAPL----DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (239)
Q Consensus       159 --~~~~~p~~~~~----~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~  232 (239)
                        .++++|++++.    ..++.+..++.++|+++ .+.++++|++|||.|+|++|++++|+|+++|++.+++++.+++|+
T Consensus       145 ~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~  223 (393)
T TIGR02819       145 DFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA-VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARL  223 (393)
T ss_pred             hCceEECCCcccccccccceeeeccHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH
Confidence              79999998653    34566777888999976 567899999999998999999999999999996677778888898


Q ss_pred             hhhhhc
Q 026414          233 DREFWS  238 (239)
Q Consensus       233 ~~~~~~  238 (239)
                      ++++++
T Consensus       224 ~~a~~~  229 (393)
T TIGR02819       224 AQARSF  229 (393)
T ss_pred             HHHHHc
Confidence            887653

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=6.6e-36  Score=264.97  Aligned_cols=209  Identities=27%  Similarity=0.356  Sum_probs=178.5

Q ss_pred             CcccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCC
Q 026414            5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE   84 (239)
Q Consensus         5 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~   84 (239)
                      ..|++++++.+.+..+.+++.+++.|.|+++||+|||.+++||++|++.+.|..+...+|.++|||++|+|+++|+++++
T Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~   87 (360)
T PLN02586          8 EHPQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTKLGKNVKK   87 (360)
T ss_pred             hchhheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCCCCCCccCCcceeEEEEEECCCCCc
Confidence            46788888888887777999999999999999999999999999999999876544467899999999999999999999


Q ss_pred             CCCCCEEeecCc-cCCCCCccccCCCCCCCCCcCCCCC----CceeccCCccccccCCcceeeecCCcceeeeEEEecce
Q 026414           85 VQPGDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATG----AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS  159 (239)
Q Consensus        85 ~~~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~----~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  159 (239)
                      |++||+|++.+. .+|++|.+|+.+..+.|++......    .|.. .+                  |+|+||+.+|.+.
T Consensus        88 ~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~-~~------------------G~~aey~~v~~~~  148 (360)
T PLN02586         88 FKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTK-NY------------------GGYSDMIVVDQHF  148 (360)
T ss_pred             cCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCc-CC------------------CccceEEEEchHH
Confidence            999999986553 5799999999999999987542100    0111 23                  3999999999999


Q ss_pred             eEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414          160 VAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (239)
Q Consensus       160 ~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~  233 (239)
                      ++++|+++++++++.+.+++.|+|+++......++|++|||.|+|++|++++|+|+++|+ ++++++.++++..
T Consensus       149 ~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~  221 (360)
T PLN02586        149 VLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKED  221 (360)
T ss_pred             eeeCCCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhh
Confidence            999999999999999999999999987666667899999999999999999999999999 7777776665543

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=100.00  E-value=4.9e-36  Score=264.69  Aligned_cols=209  Identities=30%  Similarity=0.393  Sum_probs=172.8

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCe-eeeeeEEEEEEEeCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC-ILGHEAAGIVESVGEGVTEVQPG   88 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~-~~G~e~vG~Vv~vG~~v~~~~~G   88 (239)
                      |++++++.++...++++.+.|.++++||+|||.++|||++|++.+.+..+....|. ++|||++|+|+++| .++.+++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~~~~~~i~GHE~~G~V~evG-~~~~~~~G   79 (350)
T COG1063           1 MKAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGHEFVGEVVEVG-VVRGFKVG   79 (350)
T ss_pred             CceeEEEecCCccccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCCCCCCcccCccceEEEEEec-cccCCCCC
Confidence            67778877776455788877778999999999999999999999999876666666 99999999999999 77789999


Q ss_pred             CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCcee-ccCCccccccCCcceeeecCCcceeeeEEEecceeE-ecCCC
Q 026414           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM-MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA-KIDPQ  166 (239)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~-~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~p~~  166 (239)
                      |||++.+..+|++|.+|+.+..+.|.+.+........ ..+|                  +|+||+.+|.++++ ++|++
T Consensus        80 drVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G------------------~~aEyv~vp~~~~~~~~pd~  141 (350)
T COG1063          80 DRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDG------------------GFAEYVRVPADFNLAKLPDG  141 (350)
T ss_pred             CEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCC------------------ceEEEEEeccccCeecCCCC
Confidence            9999999999999999999999999954421111111 0344                  99999999965554 55788


Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      + ..+++++.-++.++|++.......+++++|+|+|+|++|++++++++.+|+.+|++++.+++|+++++++
T Consensus       142 ~-~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~  212 (350)
T COG1063         142 I-DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEA  212 (350)
T ss_pred             C-ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHh
Confidence            7 4566666668999988644555566666999999999999999999999999999999999999999873

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=1.7e-35  Score=260.51  Aligned_cols=207  Identities=20%  Similarity=0.323  Sum_probs=174.3

Q ss_pred             cceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhc-CCCC--CCCCCeeeeeeEEEEEEEeCCCCCC
Q 026414            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDP--EGLFPCILGHEAAGIVESVGEGVTE   84 (239)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~-g~~~--~~~~p~~~G~e~vG~Vv~vG~~v~~   84 (239)
                      .++|++++.++++ ++++++|.| +.++||||||++++||++|++++. +...  ...+|.++|||++|+|+++  ++++
T Consensus         3 ~~~~~~~~~~~~~-~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~~   78 (343)
T PRK09880          3 VKTQSCVVAGKKD-VAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSSG   78 (343)
T ss_pred             ccceEEEEecCCc-eEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCcc
Confidence            5789999999988 999999997 689999999999999999999875 3322  2357899999999999999  6889


Q ss_pred             CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (239)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p  164 (239)
                      |++||+|++.+..+|++|.+|..++.+.|.+...   .|....              .....|+|+||++++...++++|
T Consensus        79 ~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~--------------~~~~~G~~aey~~v~~~~~~~~P  141 (343)
T PRK09880         79 LKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRF---FGSAMY--------------FPHVDGGFTRYKVVDTAQCIPYP  141 (343)
T ss_pred             CCCCCEEEECCCCCCcCChhhcCCChhhCCCcce---eecccc--------------cCCCCCceeeeEEechHHeEECC
Confidence            9999999999999999999999999999987543   221100              00012499999999999999999


Q ss_pred             CCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++++++++ +..+++++|+++ ......+|++|||+|+|++|++++|+++++|+++|++++++++|++++++
T Consensus       142 ~~l~~~~aa-~~~~~~~a~~al-~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~  212 (343)
T PRK09880        142 EKADEKVMA-FAEPLAVAIHAA-HQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE  212 (343)
T ss_pred             CCCCHHHHH-hhcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence            999987665 445778899977 45566689999999999999999999999999789999999999998875

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=100.00  E-value=6e-35  Score=259.92  Aligned_cols=229  Identities=59%  Similarity=0.981  Sum_probs=197.8

Q ss_pred             ccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414            7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (239)
Q Consensus         7 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~   86 (239)
                      -.+||++++...+++++++++|.|.+.++||+||++++++|++|.+.+.|... ..+|.++|||++|+|+++|++++.++
T Consensus         5 ~~~~~a~~~~~~~~~~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~   83 (373)
T cd08299           5 VIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV-TPFPVILGHEAAGIVESVGEGVTTVK   83 (373)
T ss_pred             cceeEEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC-CCCCccccccceEEEEEeCCCCccCC
Confidence            35699999998887899999999999999999999999999999999988753 35788999999999999999999999


Q ss_pred             CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (239)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~  166 (239)
                      +||+|++.+..+|++|.+|..++.+.|+........|.. .++..+...+|...+++.+.|+|++|+.++.+.++++|++
T Consensus        84 ~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP~~  162 (373)
T cd08299          84 PGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLM-QDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAA  162 (373)
T ss_pred             CCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccc-cCCccccccCCcccccccCCCcccceEEecccceeeCCCC
Confidence            999999998999999999999999999875432212332 3333344445555555555689999999999999999999


Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++++++.+.+++.++|+++....++++|++|||+|+|++|++++++++.+|+.+|++++++++|++.+++
T Consensus       163 l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~  233 (373)
T cd08299         163 APLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKE  233 (373)
T ss_pred             CChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            99999999999999999988788899999999999889999999999999998779999999998887753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=9e-35  Score=254.74  Aligned_cols=201  Identities=24%  Similarity=0.347  Sum_probs=176.2

Q ss_pred             EEEecCC----CCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414           13 AVAWEPN----KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (239)
Q Consensus        13 ~~~~~~~----~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G   88 (239)
                      +.+...+    ..++++++|.|.|+++||+|||++++||++|.+.+.|.++...+|.++|||++|+|+++|+++++|++|
T Consensus         2 ~~~~~~g~~~~~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   81 (329)
T TIGR02822         2 WEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPGHEVVGEVAGRGADAGGFAVG   81 (329)
T ss_pred             eeeecCCcCCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCCCCCCccCCcceEEEEEEECCCCcccCCC
Confidence            4454444    248999999999999999999999999999999998876544457899999999999999999999999


Q ss_pred             CEEeecCc-cCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCC
Q 026414           89 DHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (239)
Q Consensus        89 d~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~  167 (239)
                      |+|++.+. .+|+.|.+|..++.+.|.+...   .|.. .+|                  +|++|+.+|...++++|+++
T Consensus        82 d~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~lP~~~  139 (329)
T TIGR02822        82 DRVGIAWLRRTCGVCRYCRRGAENLCPASRY---TGWD-TDG------------------GYAEYTTVPAAFAYRLPTGY  139 (329)
T ss_pred             CEEEEcCccCcCCCChHHhCcCcccCCCccc---CCcc-cCC------------------cceeEEEeccccEEECCCCC
Confidence            99987653 4799999999999999987543   2322 334                  99999999999999999999


Q ss_pred             CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++++++.+.+++.|||+++ ...++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|++++++
T Consensus       140 ~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~  207 (329)
T TIGR02822       140 DDVELAPLLCAGIIGYRAL-LRASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA  207 (329)
T ss_pred             CHHHhHHHhccchHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Confidence            9999999999999999977 56889999999999999999999999999999 79999999999998865

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=100.00  E-value=1.7e-34  Score=255.08  Aligned_cols=205  Identities=26%  Similarity=0.323  Sum_probs=166.9

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC---CCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE---GLFPCILGHEAAGIVESVGEGVTEVQ   86 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~---~~~p~~~G~e~vG~Vv~vG~~v~~~~   86 (239)
                      ||++++...+.+++++++|.|+|+++||||||++++||++|++.+.|.++.   ..+|.++|||++|+|+++|++ ++|+
T Consensus         1 mka~~~~~~~~~l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~   79 (355)
T cd08230           1 MKAIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLS   79 (355)
T ss_pred             CceeEecCCCCCCeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCC
Confidence            688888755444999999999999999999999999999999999886532   246889999999999999999 9999


Q ss_pred             CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (239)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~  166 (239)
                      +||+|+..+...|++|.+|..++.+.|..... ...|....+                  |+|+||+.++...++++|++
T Consensus        80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~-~~~g~~~~~------------------G~~aey~~~~~~~~~~~P~~  140 (355)
T cd08230          80 PGDLVVPTVRRPPGKCLNCRIGRPDFCETGEY-TERGIKGLH------------------GFMREYFVDDPEYLVKVPPS  140 (355)
T ss_pred             CCCEEEeccccCCCcChhhhCcCcccCCCcce-eccCcCCCC------------------ccceeEEEeccccEEECCCC
Confidence            99999999988999999999999999986432 111221122                  39999999999999999999


Q ss_pred             CCchhhhhcccccchhhhhhh------hhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC---ChhhHhhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVW------NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI---DPKKFDREFW  237 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~------~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~---~~~~~~~~~~  237 (239)
                      ++ + ++.+..++.+++.++.      .....++|++|||+|+|++|++++|+|+++|+ +|+++++   +++|++++++
T Consensus       141 ~~-~-~a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~  217 (355)
T cd08230         141 LA-D-VGVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE  217 (355)
T ss_pred             CC-c-ceeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH
Confidence            98 3 3444445555544332      22236789999999999999999999999999 7998887   5788887764

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=4.2e-34  Score=253.07  Aligned_cols=215  Identities=25%  Similarity=0.280  Sum_probs=181.3

Q ss_pred             CcccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCC
Q 026414            5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE   84 (239)
Q Consensus         5 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~   84 (239)
                      .....+++++++.++.++++++++.|+|+++||+|||++++||++|++.+.+.+....+|.++|||++|+|+++|+++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~Vv~vG~~v~~   84 (357)
T PLN02514          5 EAEKKTTGWAARDPSGHLSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSK   84 (357)
T ss_pred             CCCceEEEEEEecCCCCceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCcCCCCccCCceeeEEEEEECCCccc
Confidence            34456999999999999999999999999999999999999999999999887544457889999999999999999999


Q ss_pred             CCCCCEEeecCcc-CCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEec
Q 026414           85 VQPGDHVIPCYQA-ECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (239)
Q Consensus        85 ~~~Gd~V~~~~~~-~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  163 (239)
                      |++||+|++.+.. .|++|.+|..++.+.|.+.......++  ..|             ....|+|++|+.+|...++++
T Consensus        85 ~~~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~--~~g-------------~~~~G~~aey~~v~~~~~~~i  149 (357)
T PLN02514         85 FTVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVY--TDG-------------KPTQGGFASAMVVDQKFVVKI  149 (357)
T ss_pred             ccCCCEEEEcCccccCCCChhHhCCCcccCCCccccccccc--cCC-------------ccCCCccccEEEEchHHeEEC
Confidence            9999999865543 699999999999999987532110000  001             112359999999999999999


Q ss_pred             CCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      |+++++++++.+++++.|||+++......++|++++|+|+|++|++++|+|+++|+ +++++++++++++.+
T Consensus       150 P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~  220 (357)
T PLN02514        150 PEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEA  220 (357)
T ss_pred             CCCCCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence            99999999999999999999987665666899999999889999999999999999 788888777766544

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=100.00  E-value=1.2e-33  Score=250.67  Aligned_cols=226  Identities=60%  Similarity=1.050  Sum_probs=203.5

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd   89 (239)
                      +||+++.+.++++++++++.|.+++++|+||+.++++|++|++...+... ..+|.++|||++|+|+++|++++.+++||
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~-~~~~~i~g~e~~G~V~~vG~~v~~~~~Gd   79 (365)
T cd05279           1 CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP-TPLPVILGHEGAGIVESIGPGVTTLKPGD   79 (365)
T ss_pred             CceeEEecCCCCcEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCCCC
Confidence            57899998887799999999999999999999999999999998887654 35678999999999999999999999999


Q ss_pred             EEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCc
Q 026414           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (239)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~  169 (239)
                      +|+..+..+|++|.+|..++.+.|.........|.. .+|..++.-+|+..+++.+.|+|++|+.++...++++|+++++
T Consensus        80 ~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~~  158 (365)
T cd05279          80 KVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLM-SDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPL  158 (365)
T ss_pred             EEEEcCCCCCCCChhhcCCCcccCCCcccccccccc-cCCcceeeccCCccccccccccccceEEecCCceEECCCCCCH
Confidence            999999899999999999999999987766566655 6677777778888888888899999999999999999999999


Q ss_pred             hhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++++.+.+++.++|+++....++++|++|||+|+|.+|++++++++++|+..+++++++++|.+.+.+
T Consensus       159 ~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~  226 (365)
T cd05279         159 EKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ  226 (365)
T ss_pred             HHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            99999999999999988888899999999999889999999999999999668888888888887643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=1e-33  Score=252.22  Aligned_cols=205  Identities=28%  Similarity=0.329  Sum_probs=170.2

Q ss_pred             EEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCCEE
Q 026414           12 AAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV   91 (239)
Q Consensus        12 a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V   91 (239)
                      +++..+.++++++.+++.|+|+++||+|||.+++||++|++.+.|.+....+|.++|||++|+|+++|+++++|++||+|
T Consensus         9 ~~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~~~~p~i~GhE~aG~Vv~vG~~v~~~~vGdrV   88 (375)
T PLN02178          9 GWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRV   88 (375)
T ss_pred             EEEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCCCCCCcccCceeeEEEEEECCCCCccCCCCEE
Confidence            44455555569999999999999999999999999999999998865434568899999999999999999999999999


Q ss_pred             eecCcc-CCCCCccccCCCCCCCCCcCCCCC----CceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414           92 IPCYQA-ECRECKFCKSGKTNLCGKVRGATG----AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (239)
Q Consensus        92 ~~~~~~-~~~~c~~c~~~~~~~c~~~~~~~~----~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~  166 (239)
                      ++.+.. +|++|.+|++++.+.|++......    .|.. .+                  |+|+||+.+|.+.++++|++
T Consensus        89 ~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~-~~------------------G~~aey~~v~~~~~~~lP~~  149 (375)
T PLN02178         89 GVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTR-NQ------------------GGYSDVIVVDHRFVLSIPDG  149 (375)
T ss_pred             EEcCccCCCCCChhHhCcchhcCCCccccccccccCCCc-CC------------------CccccEEEEchHHeEECCCC
Confidence            876654 699999999999999997542110    0111 12                  49999999999999999999


Q ss_pred             CCchhhhhcccccchhhhhhhhhcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh-Hhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK-FDREF  236 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~-~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~-~~~~~  236 (239)
                      +++++++.+.++..|+|+++..... .++|++|+|.|+|++|++++|+|+++|+ +|++++.++++ .++++
T Consensus       150 ls~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~  220 (375)
T PLN02178        150 LPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAID  220 (375)
T ss_pred             CCHHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHH
Confidence            9999999999999999987744432 4689999999999999999999999999 78888776554 55553

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=9.5e-34  Score=247.65  Aligned_cols=181  Identities=29%  Similarity=0.365  Sum_probs=160.8

Q ss_pred             eeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCC-CCCCCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DPEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (239)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~-~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~   86 (239)
                      ||+++++..+.+  ++++|+|.|.|++|||||||++++||+.|..++.|. .+..++|.++|.|++|+|+++|++++.|+
T Consensus         1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~   80 (326)
T COG0604           1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFK   80 (326)
T ss_pred             CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcC
Confidence            788999887765  889999999999999999999999999999999997 34446899999999999999999999999


Q ss_pred             CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (239)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~  166 (239)
                      +||+|+.... .|                           .                  .|+|+||..+|+..++++|++
T Consensus        81 ~GdrV~~~~~-~~---------------------------~------------------~G~~AEy~~v~a~~~~~~P~~  114 (326)
T COG0604          81 VGDRVAALGG-VG---------------------------R------------------DGGYAEYVVVPADWLVPLPDG  114 (326)
T ss_pred             CCCEEEEccC-CC---------------------------C------------------CCcceeEEEecHHHceeCCCC
Confidence            9999986530 00                           1                  239999999999999999999


Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++++||++++++.|||+++....++++|++|||+|+ |++|.+++|+||++|+ .++++.+++++.+++++
T Consensus       115 ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~  185 (326)
T COG0604         115 LSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKE  185 (326)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHh
Confidence            9999999999999999999988899999999999986 9999999999999998 67777777777666654

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=100.00  E-value=2.9e-33  Score=246.88  Aligned_cols=200  Identities=32%  Similarity=0.483  Sum_probs=175.0

Q ss_pred             EEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCC-CCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCCEE
Q 026414           13 AVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV   91 (239)
Q Consensus        13 ~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~-~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V   91 (239)
                      ++++++++++++++.|.|.|+++||+|||+++++|++|++.+.+. .+...+|.++|||++|+|+++|++++.+ +||+|
T Consensus         2 ~~~~~~g~~~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV   80 (349)
T TIGR03201         2 WMMTEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGKAV   80 (349)
T ss_pred             ceEecCCCCceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCCEE
Confidence            567777777999999999999999999999999999999887443 3233678999999999999999999877 99999


Q ss_pred             eecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCC------
Q 026414           92 IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP------  165 (239)
Q Consensus        92 ~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~------  165 (239)
                      ++.+..+|++|.+|..++.+.|.....   .|.. .+                  |+|++|+.+|...++++|+      
T Consensus        81 ~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~-~~------------------G~~ae~~~v~~~~~~~ip~~~~~~~  138 (349)
T TIGR03201        81 IVPAVIPCGECELCKTGRGTICRAQKM---PGND-MQ------------------GGFASHIVVPAKGLCVVDEARLAAA  138 (349)
T ss_pred             EECCCCCCCCChhhhCcCcccCCCCCc---cCcC-CC------------------CcccceEEechHHeEECCccccccc
Confidence            999999999999999999999986432   2221 23                  3999999999999999998      


Q ss_pred             CCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++++++++.+.+++.++|+++ ....+++|++|||+|+|++|++++++|+++|+ +|++++++++|++++++
T Consensus       139 ~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~  208 (349)
T TIGR03201       139 GLPLEHVSVVADAVTTPYQAA-VQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG  208 (349)
T ss_pred             CCCHHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence            889989998888999999976 45789999999999999999999999999999 79999999999888754

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=100.00  E-value=4.8e-33  Score=244.88  Aligned_cols=199  Identities=17%  Similarity=0.177  Sum_probs=163.4

Q ss_pred             ceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC----CCCCeeeeeeEEEEEEEeCCCCCC
Q 026414            9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE----GLFPCILGHEAAGIVESVGEGVTE   84 (239)
Q Consensus         9 ~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~----~~~p~~~G~e~vG~Vv~vG~~v~~   84 (239)
                      ..++++++++++ ++++|.|.|+ +++||||||+++|||++|++.+.|.+..    ..+|.++|||++|+|+++|.+  +
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--~   77 (341)
T cd08237           2 INQVYRLVRPKF-FEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--T   77 (341)
T ss_pred             cccceEEeccce-EEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--c
Confidence            457889999987 9999999995 9999999999999999999999987532    257999999999999998864  7


Q ss_pred             CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (239)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p  164 (239)
                      |++||||.+.+..+|+ |..|  ...+.|.+...   .|.. .+|                  +|+||+.+|.+.++++|
T Consensus        78 ~~vGdrV~~~~~~~~~-~~~~--~~~~~c~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~vP  132 (341)
T cd08237          78 YKVGTKVVMVPNTPVE-KDEI--IPENYLPSSRF---RSSG-YDG------------------FMQDYVFLPPDRLVKLP  132 (341)
T ss_pred             cCCCCEEEECCCCCch-hccc--chhccCCCcce---eEec-CCC------------------ceEEEEEEchHHeEECC
Confidence            9999999998887777 4355  34566764322   1221 234                  99999999999999999


Q ss_pred             CCCCchhhhhcccccchhhhhhhh--hcCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChhhHhhhhh
Q 026414          165 PQAPLDKVCLLGCGVPTGLGAVWN--TAKVEPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~--~~~~~~g~~vlI~G~g~~g~~ai~~~~~-~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++++++|+.+. +++++++++..  ...+++|++|||+|+|++|++++|+++. +|..+|++++++++|++++++
T Consensus       133 ~~l~~~~aa~~~-~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~  207 (341)
T cd08237         133 DNVDPEVAAFTE-LVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF  207 (341)
T ss_pred             CCCChHHhhhhc-hHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence            999998877554 77888887643  3456899999999999999999999986 666589999999999988754

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-32  Score=242.05  Aligned_cols=202  Identities=28%  Similarity=0.426  Sum_probs=172.5

Q ss_pred             eeEEEEecCCCCeEEEeecCCCC-CCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G   88 (239)
                      ||+++++++++ ++++|+|.|.| .++||+|||+++++|++|+..+..... ..+|.++|||++|+|+++|+++++|++|
T Consensus         1 Mka~~~~~~~~-~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~vG   78 (347)
T PRK10309          1 MKSVVNDTDGI-VRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNGA-HYYPITLGHEFSGYVEAVGSGVDDLHPG   78 (347)
T ss_pred             CceEEEeCCCc-eEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCCC-CCCCcccccceEEEEEEeCCCCCCCCCC
Confidence            78999998876 99999999997 699999999999999999875432211 1357899999999999999999999999


Q ss_pred             CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCC
Q 026414           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (239)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~  168 (239)
                      |+|++.+..+|+.|++|..+..+.|.+...   .|.. .+                  |+|++|+.++...++++|++++
T Consensus        79 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~-~~------------------G~~aey~~v~~~~~~~lP~~~s  136 (347)
T PRK10309         79 DAVACVPLLPCFTCPECLRGFYSLCAKYDF---IGSR-RD------------------GGNAEYIVVKRKNLFALPTDMP  136 (347)
T ss_pred             CEEEECCCcCCCCCcchhCcCcccCCCcce---eccC-CC------------------CccceeEEeehHHeEECcCCCC
Confidence            999999999999999999999999986432   2221 23                  4999999999999999999999


Q ss_pred             chhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++++.+. .+.++++++ ....+++|++|||+|+|++|++++|+|+++|++.|++++++++|++++++
T Consensus       137 ~~~aa~~~-~~~~~~~~~-~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~  203 (347)
T PRK10309        137 IEDGAFIE-PITVGLHAF-HLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS  203 (347)
T ss_pred             HHHhhhhh-HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            99988764 455577754 66788999999999999999999999999999668999999999888754

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=100.00  E-value=4.7e-32  Score=239.78  Aligned_cols=212  Identities=29%  Similarity=0.454  Sum_probs=182.3

Q ss_pred             eEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCC------
Q 026414           11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE------   84 (239)
Q Consensus        11 ~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~------   84 (239)
                      |++++.++++.+++++++.|.|+++||+|||.++++|++|+....|.++...+|.++|||++|+|+++|+++++      
T Consensus         2 ka~~~~~~~~~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~~~~   81 (361)
T cd08231           2 RAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGHEGVGRVVALGGGVTTDVAGEP   81 (361)
T ss_pred             eEEEEcCCCCCCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCCCCCCcccccCCceEEEEeCCCccccccCCc
Confidence            78999998877999999999999999999999999999999998887643467889999999999999999986      


Q ss_pred             CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc-eeEec
Q 026414           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV-SVAKI  163 (239)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~  163 (239)
                      |++||+|+..+...|+.|.+|..++.+.|.+...+   |.....+            .....|+|++|+.++.+ .++++
T Consensus        82 ~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~---~~~~~~~------------~~~~~g~~a~~~~v~~~~~~~~l  146 (361)
T cd08231          82 LKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKY---GHEASCD------------DPHLSGGYAEHIYLPPGTAIVRV  146 (361)
T ss_pred             cCCCCEEEEcccCCCCCChhHhCcCccccccchhc---ccccccc------------CCCCCcccceEEEecCCCceEEC
Confidence            99999999999999999999999999999876532   2211100            00123599999999986 79999


Q ss_pred             CCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      |++++..+++.+++++.|||+++......++|++|||+|+|.+|++++++|+.+|+++|+++++++++.+++++
T Consensus       147 P~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~  220 (361)
T cd08231         147 PDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE  220 (361)
T ss_pred             CCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            99999999998889999999988666666799999999989999999999999998789999999988877643

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PRK10083 putative oxidoreductase; Provisional

Probab=100.00  E-value=6.8e-32  Score=236.49  Aligned_cols=203  Identities=28%  Similarity=0.460  Sum_probs=178.0

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd   89 (239)
                      |||+++++++. ++++++|.|+|+++||+||+.+++||++|+..+.+..+...+|.++|||++|+|+++|++++.+++||
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd   79 (339)
T PRK10083          1 MKSIVIEKPNS-LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVDAARIGE   79 (339)
T ss_pred             CeEEEEecCCe-eEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCcCCCCcccccceEEEEEEECCCCccCCCCC
Confidence            68999998886 99999999999999999999999999999999888765446789999999999999999999999999


Q ss_pred             EEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCc
Q 026414           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (239)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~  169 (239)
                      +|++.+...|+.|.+|..++++.|.....   .+.. .+                  |+|++|+.++...++++|+++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~~~~~~~~~ip~~~~~  137 (339)
T PRK10083         80 RVAVDPVISCGHCYPCSIGKPNVCTSLVV---LGVH-RD------------------GGFSEYAVVPAKNAHRIPDAIAD  137 (339)
T ss_pred             EEEEccccCCCCCccccCcCcccCCCCce---EEEc-cC------------------CcceeeEEechHHeEECcCCCCH
Confidence            99999999999999999999999975432   1221 22                  49999999999999999999998


Q ss_pred             hhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChhhHhhhhh
Q 026414          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~-~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++++ +..++.++++ +....++++|++|+|+|+|.+|+++++++++ +|+..+++++++++|++++++
T Consensus       138 ~~a~-~~~~~~~a~~-~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~  204 (339)
T PRK10083        138 QYAV-MVEPFTIAAN-VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKE  204 (339)
T ss_pred             HHHh-hhchHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence            8876 4457778885 5577889999999999999999999999997 699778889999999888754

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=100.00  E-value=8e-32  Score=239.09  Aligned_cols=227  Identities=41%  Similarity=0.718  Sum_probs=186.9

Q ss_pred             cceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (239)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~   87 (239)
                      ++|||+++.++++++++++.+.|.++++||+||+.++++|++|+....+.++ ..+|.++|||++|+|+++|+++.++++
T Consensus         1 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~~   79 (365)
T cd08278           1 MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP-TPLPAVLGHEGAGVVEAVGSAVTGLKP   79 (365)
T ss_pred             CccEEeeeccCCCcceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCC
Confidence            4799999999777799999999999999999999999999999999888654 346789999999999999999999999


Q ss_pred             CCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccc-cCC-cceeeecCCcceeeeEEEecceeEecCC
Q 026414           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFS-ING-KPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (239)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~-~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~p~  165 (239)
                      ||+|++.+. .|+.|.+|..++.+.|.+.......|.. .+|..-.. .+| ++..+++..|+|++|+.++...++++|+
T Consensus        80 Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP~  157 (365)
T cd08278          80 GDHVVLSFA-SCGECANCLSGHPAYCENFFPLNFSGRR-PDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDK  157 (365)
T ss_pred             CCEEEEccc-CCCCChHHhCCCcccccCcccccccccc-cCCcccccccCCcccccccccccceeeEEEecchhEEECCC
Confidence            999998764 8999999999999999865432111111 00100000 000 0001123456999999999999999999


Q ss_pred             CCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++++++++.+++++.||+.++.....++++++|||+|+|.+|++++++++++|++.+++++++++|.+++++
T Consensus       158 ~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~  229 (365)
T cd08278         158 DVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE  229 (365)
T ss_pred             CCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            999999999999999999988888889999999999889999999999999999779999999998887654

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=1.2e-31  Score=234.76  Aligned_cols=204  Identities=30%  Similarity=0.494  Sum_probs=180.2

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd   89 (239)
                      |||+++++++++++++++|.|+++++||+||+.++++|++|.....|..+...+|.++|||++|+|+++|++++++++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd   80 (333)
T cd08296           1 YKAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHEVVGRIDAVGEGVSRWKVGD   80 (333)
T ss_pred             CeEEEEccCCCCceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCCCCCCcccCcceeEEEEEECCCCccCCCCC
Confidence            79999999966699999999999999999999999999999999888654345688999999999999999999999999


Q ss_pred             EEeecC-ccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCC
Q 026414           90 HVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (239)
Q Consensus        90 ~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~  168 (239)
                      +|++.+ ...|++|.+|..++.+.|.+...   .|.. .+                  |+|++|+.++...++++|++++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~---~~~~-~~------------------g~~a~~~~v~~~~~~~lp~~~~  138 (333)
T cd08296          81 RVGVGWHGGHCGTCDACRRGDFVHCENGKV---TGVT-RD------------------GGYAEYMLAPAEALARIPDDLD  138 (333)
T ss_pred             EEEeccccCCCCCChhhhCcCcccCCCCCc---cCcc-cC------------------CcceeEEEEchhheEeCCCCCC
Confidence            998754 56899999999999999997653   2322 22                  3899999999999999999999


Q ss_pred             chhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +.+++.+.+++.|+|+++. ...++++++|||+|+|.+|++++++|+++|+ +++++++++++++.+++
T Consensus       139 ~~~aa~l~~~~~ta~~~~~-~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~  205 (333)
T cd08296         139 AAEAAPLLCAGVTTFNALR-NSGAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARK  205 (333)
T ss_pred             HHHhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Confidence            9999999999999999774 4589999999999999999999999999999 89999999888887753

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=100.00  E-value=1.4e-31  Score=235.87  Aligned_cols=207  Identities=27%  Similarity=0.362  Sum_probs=180.7

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd   89 (239)
                      |||+++++++. +++++++.|.++++||+|||+++++|++|++.+.+......+|.++|||++|+|+++|++++++++||
T Consensus         1 mka~~~~~~~~-~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd   79 (351)
T cd08285           1 MKAFAMLGIGK-VGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGMILGHEAVGVVEEVGSEVKDFKPGD   79 (351)
T ss_pred             CceEEEccCCc-cEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCCCCCCcccCcceEEEEEEecCCcCccCCCC
Confidence            78999999886 99999999999999999999999999999998877654446688999999999999999999999999


Q ss_pred             EEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc--eeEecCCCC
Q 026414           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQA  167 (239)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~p~~~  167 (239)
                      +|+..+..+|+.|..|..++.+.|.+...+...+                   ....|+|++|+.++..  .++++|+++
T Consensus        80 ~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~-------------------~~~~g~~~~y~~v~~~~~~~~~lP~~~  140 (351)
T cd08285          80 RVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFS-------------------NFKDGVFAEYFHVNDADANLAPLPDGL  140 (351)
T ss_pred             EEEEcCcCCCCCCHHHHCcCcccCcCCCCCcccc-------------------CCCCcceeEEEEcchhhCceEECCCCC
Confidence            9999888899999999999999998643110011                   1113499999999974  899999999


Q ss_pred             CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++++++.++..+.|+++++ ....++++++|||+|+|.+|++++++++.+|+..+++++++++|.+++++
T Consensus       141 ~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~  209 (351)
T cd08285         141 TDEQAVMLPDMMSTGFHGA-ELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE  209 (351)
T ss_pred             CHHHhhhhccchhhHHHHH-HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            9999999988999999974 77889999999999889999999999999999779999999998887654

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=100.00  E-value=1.5e-31  Score=235.81  Aligned_cols=204  Identities=31%  Similarity=0.488  Sum_probs=175.9

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCC---C--------CCCCCeeeeeeEEEEEEEe
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---P--------EGLFPCILGHEAAGIVESV   78 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~--------~~~~p~~~G~e~vG~Vv~v   78 (239)
                      |||+++.++++ ++++++|.|+|.++||+||+.++++|++|+....+..   +        ...+|.++|||++|+|+++
T Consensus         1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~v   79 (351)
T cd08233           1 MKAARYHGRKD-IRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEV   79 (351)
T ss_pred             CceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEe
Confidence            78999998876 9999999999999999999999999999987665321   1        0136889999999999999


Q ss_pred             CCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc
Q 026414           79 GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV  158 (239)
Q Consensus        79 G~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  158 (239)
                      |+++++|++||+|...+...|++|.+|.++..+.|.....   .|....+                  |+|++|+.++..
T Consensus        80 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------------------g~~a~~~~~~~~  138 (351)
T cd08233          80 GSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGF---IGLGGGG------------------GGFAEYVVVPAY  138 (351)
T ss_pred             CCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCce---eccCCCC------------------CceeeEEEechH
Confidence            9999999999999999999999999999999999985431   2211012                  499999999999


Q ss_pred             eeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          159 SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       159 ~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      .++++|+++++++++.+ .+..|||+++ ...++++|++|||+|+|.+|++++|+++.+|+++|+++++++++.+++.+
T Consensus       139 ~~~~lP~~~~~~~aa~~-~~~~ta~~~l-~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~  215 (351)
T cd08233         139 HVHKLPDNVPLEEAALV-EPLAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE  215 (351)
T ss_pred             HeEECcCCCCHHHhhhc-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            99999999999888776 5778999977 78889999999999999999999999999998789999999988887643

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=100.00  E-value=2.6e-31  Score=237.54  Aligned_cols=224  Identities=30%  Similarity=0.394  Sum_probs=184.7

Q ss_pred             eeEEEEecCCCCeEEEeecCCCC-CCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G   88 (239)
                      |||++++++++ ++++++|.|.| .+++|+||+.+++||++|+..+.|.++..++|.++|||++|+|+++|++++++++|
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   79 (386)
T cd08283           1 MKALVWHGKGD-VRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKKGDILGHEFMGVVEEVGPEVRNLKVG   79 (386)
T ss_pred             CeeEEEecCCC-ceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCCCCCCccccccceEEEEEeCCCCCCCCCC
Confidence            78999998866 99999999998 49999999999999999999998877655678899999999999999999999999


Q ss_pred             CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcc-eeeecCCcceeeeEEEecc--eeEecCC
Q 026414           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKP-IYHFMGTSTFSQYTVVHDV--SVAKIDP  165 (239)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~--~~~~~p~  165 (239)
                      |+|+..+...|++|++|..++.+.|++......+-.  ..|....+..|-. .. ....|+|++|+.++..  .++++|+
T Consensus        80 d~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~g~~~~~~~v~~~~~~~~~lp~  156 (386)
T cd08283          80 DRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAK--LYGHAGAGIFGYSHLT-GGYAGGQAEYVRVPFADVGPFKIPD  156 (386)
T ss_pred             CEEEEcCcCCCCCChhhcCCCcccCCCccccccccc--cccccccccccccccc-CCCCCeeEEEEEcccccCeEEECCC
Confidence            999999888999999999999999987543210000  0000000000000 00 0123599999999987  8999999


Q ss_pred             CCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      ++++++++.++..++|||+++ ...++++|++|||+|+|.+|.+++++|++.|+.+++++++++++.+++++.
T Consensus       157 ~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~  228 (386)
T cd08283         157 DLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH  228 (386)
T ss_pred             CCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence            999999999999999999987 788899999999998899999999999999985699999999998887653

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=99.97  E-value=1.4e-30  Score=227.62  Aligned_cols=203  Identities=32%  Similarity=0.471  Sum_probs=181.8

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd   89 (239)
                      |||+++..+++++++++.|.|.+++||++||++++++|++|+....+..+...+|.++|||++|+|+++|++++.+++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~   80 (334)
T PRK13771          1 MKAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHEVVGTVEEVGENVKGFKPGD   80 (334)
T ss_pred             CeeEEEcCCCCCcEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCCCCCCeeccccceEEEEEeCCCCccCCCCC
Confidence            78999999998899999999999999999999999999999998888665556778999999999999999998899999


Q ss_pred             EEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCc
Q 026414           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (239)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~  169 (239)
                      +|++.+...|++|.+|..+..+.|.....   .|.. .+                  |+|++|+.++...++++|+++++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~~~~~~~~~lp~~~~~  138 (334)
T PRK13771         81 RVASLLYAPDGTCEYCRSGEEAYCKNRLG---YGEE-LD------------------GFFAEYAKVKVTSLVKVPPNVSD  138 (334)
T ss_pred             EEEECCCCCCcCChhhcCCCcccCccccc---cccc-cC------------------ceeeeeeecchhceEECCCCCCH
Confidence            99999889999999999999999987543   2221 23                  39999999999999999999999


Q ss_pred             hhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      .+++.+.+++.++|+++... .+++++++||+|+ |.+|++++++++.+|+ +++++++++++.+.++
T Consensus       139 ~~~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~-~vi~~~~~~~~~~~~~  204 (334)
T PRK13771        139 EGAVIVPCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKIVS  204 (334)
T ss_pred             HHhhcccchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            99999999999999987555 8899999999988 9999999999999998 8898988888877764

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=1.3e-30  Score=229.60  Aligned_cols=205  Identities=26%  Similarity=0.430  Sum_probs=177.4

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC---------CCCCCeeeeeeEEEEEEEeCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---------EGLFPCILGHEAAGIVESVGE   80 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---------~~~~p~~~G~e~vG~Vv~vG~   80 (239)
                      |||++++++++ +++++.+.|++.+++|+||+++++||+.|+....|...         ..++|.++|||++|+|+++|+
T Consensus         1 mka~~~~~~~~-~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~   79 (350)
T cd08256           1 MRAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGE   79 (350)
T ss_pred             CeeEEEecCCc-eEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCC
Confidence            78999998887 99999999999999999999999999999998877531         114677899999999999999


Q ss_pred             CCC--CCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc
Q 026414           81 GVT--EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV  158 (239)
Q Consensus        81 ~v~--~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  158 (239)
                      +++  .|++||+|+..+..+|++|.+|..+..+.|.....   +|+..                 ...|+|++|+.++.+
T Consensus        80 ~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~-----------------~~~g~~~~~~~~~~~  139 (350)
T cd08256          80 GAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDL---YGFQN-----------------NVNGGMAEYMRFPKE  139 (350)
T ss_pred             CcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccc---eeecc-----------------CCCCcceeeEEcccc
Confidence            998  89999999999999999999999999999986432   23210                 012499999999987


Q ss_pred             -eeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          159 -SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       159 -~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                       .++++|+++++++++.+ .++.|+|.++ ...+++++++|||.|+|.+|++++++|+++|+..+++++++++|.+++.+
T Consensus       140 ~~~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~  217 (350)
T cd08256         140 AIVHKVPDDIPPEDAILI-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARK  217 (350)
T ss_pred             cceEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHH
Confidence             67899999999999988 7889999977 78889999999997779999999999999998778899999888876553

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=99.97  E-value=2.4e-30  Score=229.32  Aligned_cols=224  Identities=47%  Similarity=0.830  Sum_probs=185.4

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd   89 (239)
                      |||+++...+.+++++++|.|+++++||+||+.++++|+.|...+.+..+ ..+|.++|+|++|+|+++|+++..+++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd   79 (363)
T cd08279           1 MRAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLP-APLPAVLGHEGAGVVEEVGPGVTGVKPGD   79 (363)
T ss_pred             CeEEEEecCCCCceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCC-CCCCccccccceEEEEEeCCCccccCCCC
Confidence            79999999888899999999999999999999999999999998887654 35678999999999999999999999999


Q ss_pred             EEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCc
Q 026414           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (239)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~  169 (239)
                      +|+..+..+|++|.+|.+++.+.|.+.... ..|.. +++.+++.--|...+.....|+|++|+.++.+.++++|+++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~  157 (363)
T cd08279          80 HVVLSWIPACGTCRYCSRGQPNLCDLGAGI-LGGQL-PDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPL  157 (363)
T ss_pred             EEEECCCCCCCCChhhcCCCcccCcccccc-ccccc-CCCcccccccCccccccccCccceeeEEeccccEEECCCCCCh
Confidence            999999999999999999999999865310 00000 0000000000111111233569999999999999999999999


Q ss_pred             hhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ++++.+.+++.+||.++.....++++++|||+|+|.+|.+++++++.+|+.+|+++++++++.+.+.
T Consensus       158 ~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~  224 (363)
T cd08279         158 DRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELAR  224 (363)
T ss_pred             HHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH
Confidence            9999999999999998888888999999999988999999999999999955999999888887764

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=99.97  E-value=2.5e-30  Score=226.97  Aligned_cols=207  Identities=31%  Similarity=0.474  Sum_probs=180.7

Q ss_pred             eeEEEEecCCCCeEEEeecCCCC-CCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G   88 (239)
                      ||++++.++++ +++.++|.|.| +++||+||+.++++|++|+..+.+..+..++|.++|+|++|+|+++|++++++++|
T Consensus         1 ~ka~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G   79 (347)
T cd05278           1 MKALVYLGPGK-IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHEFVGEVVEVGSDVKRLKPG   79 (347)
T ss_pred             CceEEEecCCc-eEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCCCCCCceeccceEEEEEEECCCccccCCC
Confidence            68999998877 99999999999 99999999999999999999988876555678899999999999999999999999


Q ss_pred             CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc--eeEecCCC
Q 026414           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ  166 (239)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~p~~  166 (239)
                      |+|+..+...|+.|.+|..+....|.+...+...|                   ....|+|++|+.++..  .++++|++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~g~~~~~~~v~~~~~~~~~lP~~  140 (347)
T cd05278          80 DRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLG-------------------NRIDGGQAEYVRVPYADMNLAKIPDG  140 (347)
T ss_pred             CEEEecCCCCCCCChhHhCcCcccCcCCCcccccc-------------------cCCCCeeeEEEEecchhCeEEECCCC
Confidence            99999999999999999999999998644221111                   1123499999999987  89999999


Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++++++.+++++.|||+++ ...+++++++|||.|+|.+|.+++++|+.+|...++++++++++.+++++
T Consensus       141 ~~~~~aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~  210 (347)
T cd05278         141 LPDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE  210 (347)
T ss_pred             CCHHHHhhhcchhhheeehh-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence            99999999999999999976 77889999999998889999999999999996578888888888776543

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=99.97  E-value=1.6e-30  Score=232.66  Aligned_cols=210  Identities=21%  Similarity=0.205  Sum_probs=178.5

Q ss_pred             cccceeEEEEec--CC---CCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC----------CCCCCeeeeee
Q 026414            6 QVITCKAAVAWE--PN---KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP----------EGLFPCILGHE   70 (239)
Q Consensus         6 ~~~~~~a~~~~~--~~---~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~----------~~~~p~~~G~e   70 (239)
                      .|.+|+|++++.  .+   +.++++++|.|.++++||+||+.+++||++|++.+.+...          ....+.++|||
T Consensus         9 ~~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e   88 (393)
T cd08246           9 VPEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSD   88 (393)
T ss_pred             CchhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccc
Confidence            678899998863  22   2388999999999999999999999999999988766411          01123588999


Q ss_pred             EEEEEEEeCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCccee
Q 026414           71 AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFS  150 (239)
Q Consensus        71 ~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~  150 (239)
                      ++|+|+++|++++++++||+|++.+...|++|..|..+..+.|.....   +|+...+                  |+|+
T Consensus        89 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~~~------------------g~~a  147 (393)
T cd08246          89 ASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRI---WGYETNY------------------GSFA  147 (393)
T ss_pred             eEEEEEEeCCCCCcCCCCCEEEEeccccccCccccccccccccccccc---ccccCCC------------------Ccce
Confidence            999999999999999999999999999999999999999999986543   3332122                  3999


Q ss_pred             eeEEEecceeEecCCCCCchhhhhcccccchhhhhhhhh--cCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 026414          151 QYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT--AKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI  227 (239)
Q Consensus       151 ~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~--~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~  227 (239)
                      +|+.++...++++|+++++++++.+.+++.|||+++...  .+++++++|||+|+ |.+|++++++++++|+ +++++++
T Consensus       148 ~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~-~vv~~~~  226 (393)
T cd08246         148 QFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGA-NPVAVVS  226 (393)
T ss_pred             eEEEechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCC-eEEEEeC
Confidence            999999999999999999999999999999999987544  67899999999997 9999999999999999 7788888


Q ss_pred             ChhhHhhhhh
Q 026414          228 DPKKFDREFW  237 (239)
Q Consensus       228 ~~~~~~~~~~  237 (239)
                      +++|.+.+++
T Consensus       227 s~~~~~~~~~  236 (393)
T cd08246         227 SEEKAEYCRA  236 (393)
T ss_pred             CHHHHHHHHH
Confidence            8888887754

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=99.97  E-value=2.5e-30  Score=226.49  Aligned_cols=206  Identities=31%  Similarity=0.467  Sum_probs=181.9

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC---CCCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTEVQ   86 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~vG~Vv~vG~~v~~~~   86 (239)
                      ||+++++++++++++.+.+.|.+++++|+||+.++++|++|+....+.+.   ...+|.++|+|++|+|+++|+++.+|+
T Consensus         1 ~ka~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~   80 (340)
T cd05284           1 MKAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLK   80 (340)
T ss_pred             CeeeEeccCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCc
Confidence            68999998877799999999999999999999999999999998877653   235678999999999999999999999


Q ss_pred             CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (239)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~  166 (239)
                      +||+|+..+...|+.|..|..+..++|.+....   |+. .+|                  +|++|+.++...++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~g------------------~~~~~~~v~~~~~~~~P~~  138 (340)
T cd05284          81 EGDPVVVHPPWGCGTCRYCRRGEENYCENARFP---GIG-TDG------------------GFAEYLLVPSRRLVKLPRG  138 (340)
T ss_pred             CCCEEEEcCCCCCCCChHHhCcCcccCCCCccc---Ccc-CCC------------------cceeeEEecHHHeEECCCC
Confidence            999999999889999999999999999987652   332 334                  9999999999999999999


Q ss_pred             CCchhhhhcccccchhhhhhhhh-cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~-~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++++++.+++.+.|||+++... ..+.++++|||+|+|.+|++++++++.+|..+|+++.+++++.+.+++
T Consensus       139 ls~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~  210 (340)
T cd05284         139 LDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER  210 (340)
T ss_pred             CCHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Confidence            99999999999999999987665 468889999999998899999999999993388889888888777643

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=6.1e-30  Score=222.54  Aligned_cols=203  Identities=40%  Similarity=0.646  Sum_probs=180.5

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd   89 (239)
                      ||++++..+++++.+.++|.|.+.+++|+|+++++++|++|+....+..+....|.++|||++|+|+++|++++.+++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd   80 (332)
T cd08259           1 MKAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHEIVGTVEEVGEGVERFKPGD   80 (332)
T ss_pred             CeEEEEecCCCceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCCCCCCeeccccceEEEEEECCCCccCCCCC
Confidence            68999987666699999999999999999999999999999999888765556788999999999999999999999999


Q ss_pred             EEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCc
Q 026414           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (239)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~  169 (239)
                      +|+...+..|++|.+|..++.+.|.+..   ..|.. .+                  |+|++|+.++...++++|+++++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~------------------g~~~~~~~v~~~~~~~ip~~~~~  138 (332)
T cd08259          81 RVILYYYIPCGKCEYCLSGEENLCRNRA---EYGEE-VD------------------GGFAEYVKVPERSLVKLPDNVSD  138 (332)
T ss_pred             EEEECCCCCCcCChhhhCCCcccCCCcc---ccccc-cC------------------CeeeeEEEechhheEECCCCCCH
Confidence            9999999999999999999999998752   23322 23                  39999999999999999999999


Q ss_pred             hhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ++++.+++++.+||+++.. ..+.+++++||+|+ |.+|++++++++..|+ .++++.+++++.+.+.
T Consensus       139 ~~~~~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~~~~~  204 (332)
T cd08259         139 ESAALAACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILK  204 (332)
T ss_pred             HHHhhhccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHH
Confidence            9999999999999998765 88999999999987 9999999999999998 8888888887776654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=99.97  E-value=6e-30  Score=227.85  Aligned_cols=213  Identities=31%  Similarity=0.435  Sum_probs=178.2

Q ss_pred             eeEEEEecCCCCeEEEeecCCCC-CCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G   88 (239)
                      ||++++.+++. ++++++|.|.+ +++||+||++++++|++|++...|..+ ..+|.++|||++|+|+++|++++.+++|
T Consensus         1 m~~~~~~~~~~-~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~-~~~p~~~g~e~~G~V~~vG~~v~~~~~G   78 (375)
T cd08282           1 MKAVVYGGPGN-VAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTG-AEPGLVLGHEAMGEVEEVGSAVESLKVG   78 (375)
T ss_pred             CceEEEecCCc-eeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC-CCCCceeccccEEEEEEeCCCCCcCCCC
Confidence            68899988875 99999999996 899999999999999999999988655 3468899999999999999999999999


Q ss_pred             CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc--eeEecCCC
Q 026414           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ  166 (239)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~p~~  166 (239)
                      |+|+..+..+|+.|..|..++...|.+.......+..   |        . .-.....|+|++|+.+|..  .++++|++
T Consensus        79 d~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~---~--------~-~~~~~~~g~~a~y~~v~~~~~~~~~lP~~  146 (375)
T cd08282          79 DRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAY---G--------Y-VDMGPYGGGQAEYLRVPYADFNLLKLPDR  146 (375)
T ss_pred             CEEEEeCCCCCCCCHHHHCcCcccCCCCCcccccccc---c--------c-cccCCCCCeeeeEEEeecccCcEEECCCC
Confidence            9999999999999999999999999864322100000   0        0 0000012489999999975  89999999


Q ss_pred             CCch---hhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          167 APLD---KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       167 ~~~~---~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++++   +++.+..+++|+|+++ ...++++|++|||.|+|.+|++++++++++|+..+++++++++|.+++++
T Consensus       147 ~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~  219 (375)
T cd08282         147 DGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAES  219 (375)
T ss_pred             CChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            9988   5677788889999987 78889999999999889999999999999998678889999998887654

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=99.97  E-value=5.5e-30  Score=225.05  Aligned_cols=206  Identities=30%  Similarity=0.445  Sum_probs=181.2

Q ss_pred             eeEEEEecCCCCeEEEeecCCCC-CCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G   88 (239)
                      ||++++.+++. ++++++|.|+| .++||+||++++++|+.|+..+.|.+....+|.++|||++|+|+++|++++.+++|
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~G   79 (345)
T cd08286           1 MKALVYHGPGK-ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVTPGRILGHEGVGVVEEVGSAVTNFKVG   79 (345)
T ss_pred             CceEEEecCCc-eeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCCCCCCceecccceEEEEEeccCccccCCC
Confidence            68999998887 99999999996 89999999999999999999998876544567899999999999999999999999


Q ss_pred             CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc--eeEecCCC
Q 026414           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ  166 (239)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~p~~  166 (239)
                      |+|+..+...|++|++|..+..+.|....+.  .|.. .+                  |+|++|+.++..  .++++|++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~------------------g~~~~~~~v~~~~~~~~~lp~~  138 (345)
T cd08286          80 DRVLISCISSCGTCGYCRKGLYSHCESGGWI--LGNL-ID------------------GTQAEYVRIPHADNSLYKLPEG  138 (345)
T ss_pred             CEEEECCcCCCCCChHHHCcCcccCCCcccc--cccc-cC------------------CeeeeEEEcccccCceEECCCC
Confidence            9999999999999999999999999866442  1221 22                  399999999987  89999999


Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++..+++.+.+++.+||.++....++.+++++||.|+|.+|.+++++++.+|+.++++++++++|.+++++
T Consensus       139 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~  209 (345)
T cd08286         139 VDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK  209 (345)
T ss_pred             CCHHHhhhccchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            99999999999999999877777889999999999889999999999999995488889888888776653

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.97  E-value=1.1e-30  Score=213.75  Aligned_cols=183  Identities=30%  Similarity=0.324  Sum_probs=170.4

Q ss_pred             CcccceeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCC
Q 026414            5 GQVITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV   82 (239)
Q Consensus         5 ~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v   82 (239)
                      .+|+..|.+++++.|..  +++++.|.|+|.++|++||-.|+|+|..|..+..|.+...+.|+++|-|++|+|+++|+++
T Consensus         4 ~~p~~~k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~~~plPytpGmEaaGvVvAvG~gv   83 (336)
T KOG1197|consen    4 ASPPLLKCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYDPAPLPYTPGMEAAGVVVAVGEGV   83 (336)
T ss_pred             CCCchheEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccCCCCCCcCCCcccceEEEEecCCc
Confidence            57888999999988775  8899999999999999999999999999999999999777899999999999999999999


Q ss_pred             CCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEe
Q 026414           83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK  162 (239)
Q Consensus        83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  162 (239)
                      +++++||||....                                                 .+|.|+++..+|...+++
T Consensus        84 tdrkvGDrVayl~-------------------------------------------------~~g~yaee~~vP~~kv~~  114 (336)
T KOG1197|consen   84 TDRKVGDRVAYLN-------------------------------------------------PFGAYAEEVTVPSVKVFK  114 (336)
T ss_pred             cccccccEEEEec-------------------------------------------------cchhhheeccccceeecc
Confidence            9999999997432                                                 234999999999999999


Q ss_pred             cCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       163 ~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +|+.+++..||++.+..+|||.-+++-.++++|++|||+.+ |++|++++|++++.|+ .+|++.++.+|++.+++
T Consensus       115 vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a-~tI~~asTaeK~~~ake  189 (336)
T KOG1197|consen  115 VPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGA-HTIATASTAEKHEIAKE  189 (336)
T ss_pred             CCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCc-EEEEEeccHHHHHHHHh
Confidence            99999999999999999999998888899999999999965 9999999999999998 99999999999998875

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=99.97  E-value=7.3e-30  Score=224.80  Aligned_cols=206  Identities=30%  Similarity=0.471  Sum_probs=181.2

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC------------CCCCCeeeeeeEEEEEEE
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP------------EGLFPCILGHEAAGIVES   77 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~------------~~~~p~~~G~e~vG~Vv~   77 (239)
                      |||+++..++.++++++.|.|+++++||+||+.++++|++|+....+.++            ...+|.++|||++|+|++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~   80 (350)
T cd08240           1 MKAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVA   80 (350)
T ss_pred             CeeEEeccCCCCceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEe
Confidence            78999988888899999999999999999999999999999998877543            124567899999999999


Q ss_pred             eCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEec
Q 026414           78 VGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD  157 (239)
Q Consensus        78 vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  157 (239)
                      +|++++++++||+|+..+...|++|.+|.+++.+.|.+...   .|.. .                  .|++++|+.++.
T Consensus        81 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~~~~  138 (350)
T cd08240          81 VGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRA---LGIF-Q------------------DGGYAEYVIVPH  138 (350)
T ss_pred             eCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCc---eeee-c------------------cCcceeeEEecH
Confidence            99999999999999999999999999999999999976432   2221 2                  248999999999


Q ss_pred             ceeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       158 ~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ..++++|+++++.+++.+.+.+.|||+++......+++++|||+|+|.+|++++++|+++|++.|++++++++|.+.+.+
T Consensus       139 ~~~~~~p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~  218 (350)
T cd08240         139 SRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA  218 (350)
T ss_pred             HHeeeCCCCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            99999999999999999999999999988766667789999999889999999999999999788999988888877643

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=1.9e-29  Score=221.64  Aligned_cols=205  Identities=33%  Similarity=0.575  Sum_probs=182.2

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd   89 (239)
                      |||+++..++.+++++++|.|.+.+++|+||+.++++|+.|+....+..+...+|.++|+|++|.|+++|+++..|++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~~~~~~~Gd   80 (345)
T cd08260           1 MRAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHEFAGVVVEVGEDVSRWRVGD   80 (345)
T ss_pred             CeeEEEecCCCCcEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCCCCCCeeeccceeEEEEEECCCCccCCCCC
Confidence            79999998888899999999999999999999999999999999888765556688999999999999999999999999


Q ss_pred             EEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc--eeEecCCCC
Q 026414           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQA  167 (239)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~p~~~  167 (239)
                      +|+..+...|++|.+|..+..+.|.+...   .|.. .+|                  +|++|+.++..  .++++|+++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~g------------------~~~~~~~v~~~~~~~~~iP~~~  138 (345)
T cd08260          81 RVTVPFVLGCGTCPYCRAGDSNVCEHQVQ---PGFT-HPG------------------SFAEYVAVPRADVNLVRLPDDV  138 (345)
T ss_pred             EEEECCCCCCCCCccccCcCcccCCCCcc---cccC-CCC------------------cceeEEEcccccCceEECCCCC
Confidence            99887788999999999999999997532   2222 133                  99999999974  899999999


Q ss_pred             CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++++++.+..+.+|||+++....++.+++++||+|+|.+|++++++++.+|+ .++++.+++++.+.+.+
T Consensus       139 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~  207 (345)
T cd08260         139 DFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARE  207 (345)
T ss_pred             CHHHhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHH
Confidence            9999999998999999988778889999999999999999999999999999 89999888888777643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=99.97  E-value=1.3e-29  Score=222.24  Aligned_cols=207  Identities=30%  Similarity=0.458  Sum_probs=176.7

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCC-CCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQ-AGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~-~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G   88 (239)
                      ||++++.+++. +++++++.|.|. ++||+||+.++++|+.|+....+.++ ..+|.++|+|++|+|+++|++++.+++|
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~G   78 (344)
T cd08284           1 MKAVVFKGPGD-VRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIP-STPGFVLGHEFVGEVVEVGPEVRTLKVG   78 (344)
T ss_pred             CeeEEEecCCC-ceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCC-CCCCcccccceEEEEEeeCCCccccCCC
Confidence            68999988764 999999999985 99999999999999999988877654 3457789999999999999999999999


Q ss_pred             CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc--eeEecCCC
Q 026414           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ  166 (239)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~p~~  166 (239)
                      |+|+..+...|++|.+|..++...|.+....+..+..                  ...|+|++|+.++..  .++++|++
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~g~~~~~~~v~~~~~~~~~~p~~  140 (344)
T cd08284          79 DRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSP------------------NLDGAQAEYVRVPFADGTLLKLPDG  140 (344)
T ss_pred             CEEEEcccCCCCCChHHhCcCcccCCCCccccccccC------------------CCCCceeEEEEcccccCceEECCCC
Confidence            9999999899999999999999999865321000110                  112499999999864  99999999


Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++++++.++++++|||+++. ....+++++|||+|+|.+|++++++++.+|+.++++++++++|.+++.+
T Consensus       141 l~~~~a~~l~~~~~ta~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~  210 (344)
T cd08284         141 LSDEAALLLGDILPTGYFGAK-RAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAA  210 (344)
T ss_pred             CCHHHhhhhcCchHHHHhhhH-hcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH
Confidence            999999999999999999874 5788999999999889999999999999997578888888888776543

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=99.97  E-value=8.7e-30  Score=229.46  Aligned_cols=197  Identities=20%  Similarity=0.284  Sum_probs=159.4

Q ss_pred             cceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhh-cCCCC----C--CCCCeeeeeeEEEEEEEeCC
Q 026414            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTW-SGKDP----E--GLFPCILGHEAAGIVESVGE   80 (239)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~-~g~~~----~--~~~p~~~G~e~vG~Vv~vG~   80 (239)
                      ++||+++++++++ ++++|+|.|+|+++||+|||++++||++|++.+ .+...    .  ..+|.++|||++|+|+++|+
T Consensus         1 m~~~a~~~~~~~~-l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~   79 (410)
T cd08238           1 MKTKAWRMYGKGD-LRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGK   79 (410)
T ss_pred             CCcEEEEEEcCCc-eEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCC
Confidence            4689999999987 999999999999999999999999999999976 44321    1  14688999999999999999


Q ss_pred             CCC-CCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc-
Q 026414           81 GVT-EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV-  158 (239)
Q Consensus        81 ~v~-~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-  158 (239)
                      +++ .|++||||++.+...|++|..|. +             .|.. .+|                  +|+||+.++.. 
T Consensus        80 ~v~~~~~vGdrV~~~~~~~c~~~~~c~-~-------------~g~~-~~G------------------~~aey~~v~~~~  126 (410)
T cd08238          80 KWQGKYKPGQRFVIQPALILPDGPSCP-G-------------YSYT-YPG------------------GLATYHIIPNEV  126 (410)
T ss_pred             CccCCCCCCCEEEEcCCcCCCCCCCCC-C-------------cccc-CCC------------------cceEEEEecHHh
Confidence            998 59999999999988899888772 1             1211 334                  99999999986 


Q ss_pred             ---eeEecCCCCCchhhhhc-ccc-cchhhhhh--------hhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcC--CCeE
Q 026414          159 ---SVAKIDPQAPLDKVCLL-GCG-VPTGLGAV--------WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAG--ASRV  222 (239)
Q Consensus       159 ---~~~~~p~~~~~~~aa~l-~~~-~~ta~~~~--------~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G--~~~v  222 (239)
                         .++++|+++++++++.+ +++ ..+++.++        ..+.++++|++|+|+|+ |++|++++|+|+++|  +.+|
T Consensus       127 ~~~~~~~lP~~l~~~~aal~epl~~~~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~V  206 (410)
T cd08238         127 MEQDCLLIYEGDGYAEASLVEPLSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLL  206 (410)
T ss_pred             ccCCeEECCCCCCHHHHhhcchHHHHHHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceE
Confidence               58999999999888854 211 11233322        24577899999999975 999999999999975  4579


Q ss_pred             EEEcCChhhHhhhhhc
Q 026414          223 IGIDIDPKKFDREFWS  238 (239)
Q Consensus       223 v~~~~~~~~~~~~~~~  238 (239)
                      ++++.+++|++.++++
T Consensus       207 i~~~~~~~r~~~a~~~  222 (410)
T cd08238         207 VVTDVNDERLARAQRL  222 (410)
T ss_pred             EEEcCCHHHHHHHHHh
Confidence            9999999999888653

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=99.97  E-value=1.8e-29  Score=220.91  Aligned_cols=203  Identities=29%  Similarity=0.481  Sum_probs=177.8

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd   89 (239)
                      ||+++++++++...++++|.|.++++||+|||+++++|++|+....+..+. ..|.++|||++|+|+++|++++.|++||
T Consensus         1 mka~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~~G~~v~~~~~Gd   79 (338)
T PRK09422          1 MKAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD-KTGRILGHEGIGIVKEVGPGVTSLKVGD   79 (338)
T ss_pred             CeEEEecCCCCCceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC-CCCccCCcccceEEEEECCCCccCCCCC
Confidence            789999988874448999999999999999999999999999988776533 3467899999999999999999999999


Q ss_pred             EEeecC-ccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCC
Q 026414           90 HVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (239)
Q Consensus        90 ~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~  168 (239)
                      +|++.+ ..+|+.|.+|..+..+.|.+...   .|.. .+|                  +|++|+.++...++++|++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~g------------------~~~~~~~v~~~~~~~~p~~~~  137 (338)
T PRK09422         80 RVSIAWFFEGCGHCEYCTTGRETLCRSVKN---AGYT-VDG------------------GMAEQCIVTADYAVKVPEGLD  137 (338)
T ss_pred             EEEEccCCCCCCCChhhcCCCcccCCCccc---cCcc-ccC------------------cceeEEEEchHHeEeCCCCCC
Confidence            998654 56899999999999999986542   2322 234                  999999999999999999999


Q ss_pred             chhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChhhHhhhhh
Q 026414          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~-~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +.+++.+.+++.|||+++ ...++++|++|||+|+|++|++++++++. +|+ +++++++++++.+.+++
T Consensus       138 ~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~-~v~~~~~~~~~~~~~~~  205 (338)
T PRK09422        138 PAQASSITCAGVTTYKAI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALAKE  205 (338)
T ss_pred             HHHeehhhcchhHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHH
Confidence            999999999999999977 77889999999999999999999999998 498 89999999999888743

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.97  E-value=1.1e-29  Score=220.65  Aligned_cols=183  Identities=26%  Similarity=0.341  Sum_probs=149.9

Q ss_pred             ceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeec-hhhhhhhcCCCCC---CCCCeeeeeeEEEEEEEeCCCCCC
Q 026414            9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALC-HTDAYTWSGKDPE---GLFPCILGHEAAGIVESVGEGVTE   84 (239)
Q Consensus         9 ~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~-~~D~~~~~g~~~~---~~~p~~~G~e~vG~Vv~vG~~v~~   84 (239)
                      +||++++.+++. +++++.|.|+|++|||||||++++|| ++|+..+.|.++.   ..+|.++|||++|+|+++|+++ +
T Consensus         1 ~~ka~~~~~~~~-l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~   78 (308)
T TIGR01202         1 KTQAIVLSGPNQ-IELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-G   78 (308)
T ss_pred             CceEEEEeCCCe-EEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-C
Confidence            578999998876 99999999999999999999999996 7999988887543   2579999999999999999998 6


Q ss_pred             CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (239)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p  164 (239)
                      |++||||+..    |..|..|..               |   .+|                  +|+||+.+|.+.++++|
T Consensus        79 ~~vGdrV~~~----~~~c~~~~~---------------~---~~G------------------~~aey~~v~~~~~~~ip  118 (308)
T TIGR01202        79 FRPGDRVFVP----GSNCYEDVR---------------G---LFG------------------GASKRLVTPASRVCRLD  118 (308)
T ss_pred             CCCCCEEEEe----Ccccccccc---------------c---cCC------------------cccceEEcCHHHceeCC
Confidence            9999999863    223322210               1   123                  99999999999999999


Q ss_pred             CCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++++++. +.+. .+.|||+++.. . ..+++++||+|+|++|++++|+|+++|++.|++++.+++|++.+..
T Consensus       119 ~~~~~~~-a~~~-~~~~a~~~~~~-~-~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~  187 (308)
T TIGR01202       119 PALGPQG-ALLA-LAATARHAVAG-A-EVKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATG  187 (308)
T ss_pred             CCCCHHH-Hhhh-HHHHHHHHHHh-c-ccCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhh
Confidence            9998754 4444 56889997743 3 3468999999999999999999999999778888888888877654

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=99.97  E-value=2.5e-29  Score=225.56  Aligned_cols=210  Identities=22%  Similarity=0.284  Sum_probs=176.8

Q ss_pred             cccceeEEEEec--CCC---CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC----------CCCCC-eeeee
Q 026414            6 QVITCKAAVAWE--PNK---PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP----------EGLFP-CILGH   69 (239)
Q Consensus         6 ~~~~~~a~~~~~--~~~---~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~----------~~~~p-~~~G~   69 (239)
                      .|.+|||+++..  .++   .+++.++|.|.|+++||+||++++++|++|.+...+...          ....| .++||
T Consensus         4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~   83 (398)
T TIGR01751         4 VPETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGS   83 (398)
T ss_pred             cchhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceeccc
Confidence            567899999965  443   499999999999999999999999999999877655321          01223 37999


Q ss_pred             eEEEEEEEeCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcce
Q 026414           70 EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTF  149 (239)
Q Consensus        70 e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~  149 (239)
                      |++|+|+++|++++.|++||+|++.....|++|++|..++.+.|.....   .|....                  .|+|
T Consensus        84 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~------------------~g~~  142 (398)
T TIGR01751        84 DASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRI---WGYETN------------------FGSF  142 (398)
T ss_pred             ceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCcccccccccc---ccccCC------------------Cccc
Confidence            9999999999999999999999999999999999999999999975432   222112                  3499


Q ss_pred             eeeEEEecceeEecCCCCCchhhhhcccccchhhhhhhh--hcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc
Q 026414          150 SQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN--TAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID  226 (239)
Q Consensus       150 ~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~--~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~  226 (239)
                      ++|+.++...++++|+++++++++.+.++..|||+++..  ...++++++|||+|+ |.+|++++++++++|+ ++++++
T Consensus       143 ae~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~-~vi~~~  221 (398)
T TIGR01751       143 AEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGG-NPVAVV  221 (398)
T ss_pred             eEEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-eEEEEc
Confidence            999999999999999999999999999999999998754  467899999999998 9999999999999999 777888


Q ss_pred             CChhhHhhhhh
Q 026414          227 IDPKKFDREFW  237 (239)
Q Consensus       227 ~~~~~~~~~~~  237 (239)
                      +++++.+.+++
T Consensus       222 ~~~~~~~~~~~  232 (398)
T TIGR01751       222 SSPEKAEYCRE  232 (398)
T ss_pred             CCHHHHHHHHH
Confidence            88888777654

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=3.3e-29  Score=222.29  Aligned_cols=225  Identities=34%  Similarity=0.583  Sum_probs=183.7

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCC---CC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE---VQ   86 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~---~~   86 (239)
                      ||++++..++.++.+++.|.|.++++||+||+.++++|++|+..+.+..+. .+|.++|||++|+|+++|+++.+   |+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~-~~p~~~g~e~~G~v~~vG~~~~~~~~~~   79 (367)
T cd08263           1 MKAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPF-PPPFVLGHEISGEVVEVGPNVENPYGLS   79 (367)
T ss_pred             CeeEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCC-CCCcccccccceEEEEeCCCCCCCCcCC
Confidence            689999998777999999999999999999999999999999988876643 56789999999999999999988   99


Q ss_pred             CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccC-CcceeeecCCcceeeeEEEecceeEecCC
Q 026414           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSIN-GKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (239)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~p~  165 (239)
                      +||+|+..+..+|++|.+|..+..++|.+...+...+..-.+|...+... +..++ ....|+|++|+.++...++++|+
T Consensus        80 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~P~  158 (367)
T cd08263          80 VGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVY-MYSMGGLAEYAVVPATALAPLPE  158 (367)
T ss_pred             CCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCccc-cccCCcceeEEEechhhEEECCC
Confidence            99999998899999999999999999997652111110000000000000 00000 01235999999999999999999


Q ss_pred             CCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ++++.+++.+.++++|||+++.....+.++++|||+|+|.+|++++++|+.+|+..++++++++++.+.+.
T Consensus       159 ~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~  229 (367)
T cd08263         159 SLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAK  229 (367)
T ss_pred             CCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence            99999999999999999998877778899999999988999999999999999955999988888877654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.97  E-value=4.8e-29  Score=220.99  Aligned_cols=206  Identities=25%  Similarity=0.380  Sum_probs=170.3

Q ss_pred             cceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC---CCCCCeeeeeeEEEEEEEeCCCCCC
Q 026414            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTE   84 (239)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~vG~Vv~vG~~v~~   84 (239)
                      .++++.++..+.. +++++++.|.++++||+||++++++|++|+....+...   ...+|.++|||++|+|+++|+++++
T Consensus        16 ~~~~~~~~~~~~~-l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   94 (364)
T PLN02702         16 EENMAAWLVGVNT-LKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKH   94 (364)
T ss_pred             cccceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCC
Confidence            5566666666655 99999999999999999999999999999998876321   1135778999999999999999999


Q ss_pred             CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (239)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p  164 (239)
                      |++||+|+..+..+|++|.+|..+..+.|.....   .+....+                  |+|++|+.++...++++|
T Consensus        95 ~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~---~~~~~~~------------------g~~~~y~~v~~~~~~~~P  153 (364)
T PLN02702         95 LVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKF---FATPPVH------------------GSLANQVVHPADLCFKLP  153 (364)
T ss_pred             CCCCCEEEEcCCCCCCCCcchhCcCcccCCCccc---cCCCCCC------------------CcccceEEcchHHeEECC
Confidence            9999999999999999999999999999986321   1111012                  399999999999999999


Q ss_pred             CCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++++.+++.. ..+.++++++ ...++.++++|||+|+|++|++++++++++|+..+++++++++|.+++++
T Consensus       154 ~~l~~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~  224 (364)
T PLN02702        154 ENVSLEEGAMC-EPLSVGVHAC-RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQ  224 (364)
T ss_pred             CCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            99998888752 2344577765 77888999999999889999999999999999778889888888876653

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.97  E-value=7.6e-29  Score=216.18  Aligned_cols=204  Identities=31%  Similarity=0.488  Sum_probs=179.9

Q ss_pred             eeEEEEecCCC----CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCC
Q 026414           10 CKAAVAWEPNK----PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV   85 (239)
Q Consensus        10 ~~a~~~~~~~~----~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~   85 (239)
                      ||++++.++++    ++++++.+.|.++++||+||+.++++|++|+....|..+...+|.++|||++|+|+++|+++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~   80 (329)
T cd08298           1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLIPGHEIVGRVEAVGPGVTRF   80 (329)
T ss_pred             CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCCCCCCccccccccEEEEEECCCCCCC
Confidence            68999998883    58899999988999999999999999999999988876545668899999999999999999999


Q ss_pred             CCCCEEeecC-ccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414           86 QPGDHVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (239)
Q Consensus        86 ~~Gd~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p  164 (239)
                      ++||+|++.+ ..+|++|.+|..+..+.|.....   .|.. .+|                  +|++|+.++...++++|
T Consensus        81 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~g------------------~~~~~~~~~~~~~~~lp  138 (329)
T cd08298          81 SVGDRVGVPWLGSTCGECRYCRSGRENLCDNARF---TGYT-VDG------------------GYAEYMVADERFAYPIP  138 (329)
T ss_pred             cCCCEEEEeccCCCCCCChhHhCcChhhCCCccc---cccc-cCC------------------ceEEEEEecchhEEECC
Confidence            9999997654 46889999999999999986543   2322 233                  89999999999999999


Q ss_pred             CCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++++.+++.+.+++.|||+++ ...++++++++||+|+|.+|+++++++++.|+ +++++++++++.+.+++
T Consensus       139 ~~~~~~~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~~~~~~~~~~~~~  209 (329)
T cd08298         139 EDYDDEEAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELARE  209 (329)
T ss_pred             CCCCHHHhhHhhhhhHHHHHHH-HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEcCChHHHHHHHH
Confidence            9999999999999999999987 88999999999999999999999999999998 89999988888887643

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.97  E-value=6.2e-29  Score=218.04  Aligned_cols=210  Identities=29%  Similarity=0.378  Sum_probs=178.0

Q ss_pred             eEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCCE
Q 026414           11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDH   90 (239)
Q Consensus        11 ~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~   90 (239)
                      |+++.+..+..+++++++.|+++++||+||++++++|++|+....+......+|.++|||++|+|+++|+++++|++||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~   80 (337)
T cd05283           1 KGYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEIVGIVVAVGSKVTKFKVGDR   80 (337)
T ss_pred             CceEEecCCCCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCCCCCCcccCcceeeEEEEECCCCcccCCCCE
Confidence            46777777777999999999999999999999999999999998887654567889999999999999999999999999


Q ss_pred             Ee-ecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCc
Q 026414           91 VI-PCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (239)
Q Consensus        91 V~-~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~  169 (239)
                      |+ ......|++|.+|.++..+.|.+..... .|.              +.-.....|+|++|+.++...++++|+++++
T Consensus        81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------------~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~  145 (337)
T cd05283          81 VGVGCQVDSCGTCEQCKSGEEQYCPKGVVTY-NGK--------------YPDGTITQGGYADHIVVDERFVFKIPEGLDS  145 (337)
T ss_pred             EEEecCCCCCCCCccccCCchhcCcchhhcc-ccc--------------ccCCCcCCCcceeEEEechhheEECCCCCCH
Confidence            97 4455689999999999999998754310 010              0001122459999999999999999999999


Q ss_pred             hhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++++.+.+.+.|||+++ ....++++++++|.|+|.+|++++++++.+|+ +++++++++++.+.+.+
T Consensus       146 ~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~  211 (337)
T cd05283         146 AAAAPLLCAGITVYSPL-KRNGVGPGKRVGVVGIGGLGHLAVKFAKALGA-EVTAFSRSPSKKEDALK  211 (337)
T ss_pred             HHhhhhhhHHHHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence            99999999999999976 44568999999998889999999999999999 89999999888877653

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=99.97  E-value=2.9e-29  Score=208.61  Aligned_cols=184  Identities=26%  Similarity=0.348  Sum_probs=163.2

Q ss_pred             CCcccceeEEEEecCCCC---eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCC-CCCeeeeeeEEEEEEEeC
Q 026414            4 EGQVITCKAAVAWEPNKP---LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVG   79 (239)
Q Consensus         4 ~~~~~~~~a~~~~~~~~~---~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~-~~p~~~G~e~vG~Vv~vG   79 (239)
                      +..+...|+++|.+-++|   ++++++++|....++|+||.+|+.||++|+..+.|.|+.. .+|.+-|+|++|+|+.+|
T Consensus        14 ~q~~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vG   93 (354)
T KOG0025|consen   14 SQMPARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVG   93 (354)
T ss_pred             cccccccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEec
Confidence            356677899999988887   7889999999888889999999999999999999998764 689999999999999999


Q ss_pred             CCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecce
Q 026414           80 EGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS  159 (239)
Q Consensus        80 ~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  159 (239)
                      +.+++|++||+|+....                              +                  .|+|++|.+.+++.
T Consensus        94 s~vkgfk~Gd~VIp~~a------------------------------~------------------lGtW~t~~v~~e~~  125 (354)
T KOG0025|consen   94 SNVKGFKPGDWVIPLSA------------------------------N------------------LGTWRTEAVFSESD  125 (354)
T ss_pred             CCcCccCCCCeEeecCC------------------------------C------------------CccceeeEeecccc
Confidence            99999999999986644                              2                  23999999999999


Q ss_pred             eEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          160 VAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       160 ~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ++++++.++.+.||.+.++..|||+++.+..++++||+|+..|+ +.+|.+.+|+|+++|+ +.+-+.++..-.+.++
T Consensus       126 Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~Gi-ktinvVRdR~~ieel~  202 (354)
T KOG0025|consen  126 LIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGI-KTINVVRDRPNIEELK  202 (354)
T ss_pred             eEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCc-ceEEEeecCccHHHHH
Confidence            99999999999999999999999999999999999999999988 9999999999999999 5555555655455443

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=1.3e-28  Score=213.93  Aligned_cols=197  Identities=26%  Similarity=0.448  Sum_probs=169.0

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd   89 (239)
                      |||+++.++++ ++++++|.|+++++||+||+.++++|++|.....+..+   +|.++|||++|+|+++|++   +++||
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~---~~~~~G~e~~G~Vv~~G~~---~~~G~   73 (319)
T cd08242           1 MKALVLDGGLD-LRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP---FPGVPGHEFVGIVEEGPEA---ELVGK   73 (319)
T ss_pred             CeeEEEeCCCc-EEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC---CCCccCceEEEEEEEeCCC---CCCCC
Confidence            68999998765 99999999999999999999999999999998887653   5778999999999999988   68999


Q ss_pred             EEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCc
Q 026414           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (239)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~  169 (239)
                      +|...+..+|+.|.+|..+....|.....   .+....+|                  +|++|+.++.+.++++|++++.
T Consensus        74 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g------------------~~~~~~~v~~~~~~~lP~~~~~  132 (319)
T cd08242          74 RVVGEINIACGRCEYCRRGLYTHCPNRTV---LGIVDRDG------------------AFAEYLTLPLENLHVVPDLVPD  132 (319)
T ss_pred             eEEECCCcCCCCChhhhCcCcccCCCCcc---cCccCCCC------------------ceEEEEEechHHeEECcCCCCH
Confidence            99999999999999999999888886432   22211233                  9999999999999999999998


Q ss_pred             hhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++++.+ ....+++. +....+++++++|||+|+|.+|++++|+++.+|+ +++++++++++.+.+++
T Consensus       133 ~~aa~~-~~~~~~~~-~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~  197 (319)
T cd08242         133 EQAVFA-EPLAAALE-ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARR  197 (319)
T ss_pred             HHhhhh-hHHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence            888764 34556666 4577889999999999889999999999999999 69999999988887754

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=1.4e-28  Score=219.68  Aligned_cols=204  Identities=28%  Similarity=0.474  Sum_probs=170.2

Q ss_pred             ceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCC------C-CCCCCeeeeeeEEEEEEEeCCC
Q 026414            9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD------P-EGLFPCILGHEAAGIVESVGEG   81 (239)
Q Consensus         9 ~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~------~-~~~~p~~~G~e~vG~Vv~vG~~   81 (239)
                      .+...++..+  .++++++|.|+++++||+||++++++|++|+..+.+..      + ...+|.++|||++|+|+++|++
T Consensus        28 ~~~~~~~~~~--~~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~  105 (384)
T cd08265          28 NLGSKVWRYP--ELRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKN  105 (384)
T ss_pred             cceeEEEeCC--CEEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCC
Confidence            3445555543  39999999999999999999999999999998876321      1 1246789999999999999999


Q ss_pred             CCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeE
Q 026414           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA  161 (239)
Q Consensus        82 v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  161 (239)
                      +++|++||+|++.+..+|+.|+.|..++.+.|.....   .|+. .+|                  +|++|+.++...++
T Consensus       106 v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~-~~g------------------~~~~~v~v~~~~~~  163 (384)
T cd08265         106 VKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKE---LGFS-ADG------------------AFAEYIAVNARYAW  163 (384)
T ss_pred             CCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcce---eeec-CCC------------------cceeeEEechHHeE
Confidence            9999999999999999999999999999999986542   3332 234                  99999999999999


Q ss_pred             ecCCCC-------Cchhhhhcccccchhhhhhhhh-cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414          162 KIDPQA-------PLDKVCLLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (239)
Q Consensus       162 ~~p~~~-------~~~~aa~l~~~~~ta~~~~~~~-~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~  233 (239)
                      ++|+++       +.. ++.+..++++||+++... .++++|++|||+|+|.+|++++++|+++|++.|++++++++|.+
T Consensus       164 ~lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~  242 (384)
T cd08265         164 EINELREIYSEDKAFE-AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRN  242 (384)
T ss_pred             ECCccccccccCCCHH-HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHH
Confidence            999863       444 555666888999987655 68999999999988999999999999999878999999888887


Q ss_pred             hhhh
Q 026414          234 REFW  237 (239)
Q Consensus       234 ~~~~  237 (239)
                      ++.+
T Consensus       243 ~~~~  246 (384)
T cd08265         243 LAKE  246 (384)
T ss_pred             HHHH
Confidence            7654

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=1.5e-28  Score=213.91  Aligned_cols=193  Identities=31%  Similarity=0.429  Sum_probs=167.9

Q ss_pred             eeEEEEecCC-CCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414           10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (239)
Q Consensus        10 ~~a~~~~~~~-~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G   88 (239)
                      ||++++..++ +.+++++.+.|+++++||+||++++++|++|+....+. ....+|.++|||++|+|+++|+++++|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~-~~~~~~~~~g~e~~G~v~~vG~~v~~~~~G   79 (325)
T cd08264           1 MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAV-KVKPMPHIPGAEFAGVVEEVGDHVKGVKKG   79 (325)
T ss_pred             CeeEEeccCCCCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCC-CCCCCCeecccceeEEEEEECCCCCCCCCC
Confidence            6888887665 45889999998899999999999999999999887642 222457799999999999999999999999


Q ss_pred             CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCC
Q 026414           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (239)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~  168 (239)
                      |+|+..+...|++|.+|..++.+.|.+...   .|.. .                  .|+|++|+.++...++++|++++
T Consensus        80 d~V~~~~~~~~~~c~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~v~~~~~~~~p~~~~  137 (325)
T cd08264          80 DRVVVYNRVFDGTCDMCLSGNEMLCRNGGI---IGVV-S------------------NGGYAEYIVVPEKNLFKIPDSIS  137 (325)
T ss_pred             CEEEECCCcCCCCChhhcCCCccccCccce---eecc-C------------------CCceeeEEEcCHHHceeCCCCCC
Confidence            999999988999999999999999997542   2221 2                  24899999999999999999999


Q ss_pred             chhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 026414          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI  227 (239)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~  227 (239)
                      +++++.+.+++.+||+++. ..+++++++|+|+|+ |.+|++++++|+++|+ .++++.+
T Consensus       138 ~~~~~~~~~~~~~a~~~l~-~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~-~v~~~~~  195 (325)
T cd08264         138 DELAASLPVAALTAYHALK-TAGLGPGETVVVFGASGNTGIFAVQLAKMMGA-EVIAVSR  195 (325)
T ss_pred             HHHhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeH
Confidence            9999999999999999774 488999999999998 9999999999999998 6777753

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.96  E-value=2.1e-28  Score=213.60  Aligned_cols=204  Identities=35%  Similarity=0.530  Sum_probs=181.7

Q ss_pred             eeEEEEecCCCC-eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC-CCCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414           10 CKAAVAWEPNKP-LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTEVQP   87 (239)
Q Consensus        10 ~~a~~~~~~~~~-~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~vG~Vv~vG~~v~~~~~   87 (239)
                      ||++++..++++ +.+.+.|.|.+++++|+|++.++++|+.|.....+... ...+|.++|+|++|+|+++|+++.++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~~   80 (338)
T cd08254           1 MKAWRFHKGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFKV   80 (338)
T ss_pred             CeeEEEecCCCCceEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCCC
Confidence            789999999987 68888999999999999999999999999999888654 2356789999999999999999999999


Q ss_pred             CCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCC
Q 026414           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (239)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~  167 (239)
                      ||+|+..+..+|+.|.+|..++...|.....   .|.. .+|                  +|++|+.++.+.++++|+++
T Consensus        81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~g------------------~~~~~~~~~~~~~~~lp~~~  138 (338)
T cd08254          81 GDRVAVPAVIPCGACALCRRGRGNLCLNQGM---PGLG-IDG------------------GFAEYIVVPARALVPVPDGV  138 (338)
T ss_pred             CCEEEECCCCCCCCChhhhCcCcccCCCCCc---cccc-cCC------------------cceeeEEechHHeEECCCCC
Confidence            9999999999999999999999999976532   2322 233                  99999999999999999999


Q ss_pred             CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ++.+++.+..+++|||+++.....++++++|||.|+|.+|.+++++|+.+|+ +|+++++++++.+.++
T Consensus       139 ~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~  206 (338)
T cd08254         139 PFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAK  206 (338)
T ss_pred             CHHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHH
Confidence            9999999999999999988778889999999998889999999999999998 7999999988887764

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=3e-28  Score=213.32  Aligned_cols=200  Identities=36%  Similarity=0.577  Sum_probs=174.0

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd   89 (239)
                      |||++++.++. +++.+++.|.++++||+|||.++++|+.|+....+..+...+|.++|+|++|+|+++|++++.|++||
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd   79 (337)
T cd08261           1 MKALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHELSGEVVEVGEGVAGLKVGD   79 (337)
T ss_pred             CeEEEEeCCCc-eEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCcCCCCcccccccEEEEEEeCCCCCCCCCCC
Confidence            68999988876 99999999999999999999999999999999887655445678999999999999999999999999


Q ss_pred             EEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCc
Q 026414           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (239)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~  169 (239)
                      +|+..+..+|++|..|+.++.+.|.....   .+.. .                  .|+|++|+.++.+ ++++|+++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~v~v~~~-~~~~p~~~~~  136 (337)
T cd08261          80 RVVVDPYISCGECYACRKGRPNCCENLQV---LGVH-R------------------DGGFAEYIVVPAD-ALLVPEGLSL  136 (337)
T ss_pred             EEEECCCCCCCCChhhhCcCcccCCCCCe---eeec-C------------------CCcceeEEEechh-eEECCCCCCH
Confidence            99998888999999999999999953321   2221 1                  2399999999999 9999999999


Q ss_pred             hhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ++++.+ ..++++++++ ...+++++++|||+|+|.+|.+++++|+.+|+ +++++.+++++.+.++
T Consensus       137 ~~aa~~-~~~~~a~~~~-~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~  200 (337)
T cd08261         137 DQAALV-EPLAIGAHAV-RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFAR  200 (337)
T ss_pred             HHhhhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHH
Confidence            999877 4677888766 77889999999999889999999999999998 8888888888877664

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=2.3e-28  Score=214.31  Aligned_cols=192  Identities=25%  Similarity=0.423  Sum_probs=164.4

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC-----------CCCCCeeeeeeEEEEEEEe
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-----------EGLFPCILGHEAAGIVESV   78 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-----------~~~~p~~~G~e~vG~Vv~v   78 (239)
                      |||+++.++  .+++++++.|+++++||+||+.++++|+.|++...|...           ...+|.++|+|++|+|+++
T Consensus         1 m~a~~~~~~--~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v   78 (341)
T cd08262           1 MRAAVFRDG--PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDY   78 (341)
T ss_pred             CceEEEeCC--ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEe
Confidence            689998866  599999999999999999999999999999998877311           2235788999999999999


Q ss_pred             CCCCCC-CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEec
Q 026414           79 GEGVTE-VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD  157 (239)
Q Consensus        79 G~~v~~-~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  157 (239)
                      |+++++ |++||+|+..+...|+.|..|..++.+              ..+                  |+|++|+.++.
T Consensus        79 G~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~--------------~~~------------------g~~~~~~~v~~  126 (341)
T cd08262          79 GPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSP--------------EAP------------------GGYAEYMLLSE  126 (341)
T ss_pred             CCCCcCCCCCCCEEEecCCcCCCCChhhhCCCCc--------------CCC------------------CceeeeEEech
Confidence            999987 999999999999999999999432110              012                  38999999999


Q ss_pred             ceeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       158 ~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +.++++|+++++++++ +..++++||++ ....+++++++|||+|+|.+|.+++|+++++|++.++++++++++.+++++
T Consensus       127 ~~~~~lP~~~s~~~a~-~~~~~~~a~~~-~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~  204 (341)
T cd08262         127 ALLLRVPDGLSMEDAA-LTEPLAVGLHA-VRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALA  204 (341)
T ss_pred             HHeEECCCCCCHHHhh-hhhhHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence            9999999999988877 55688899987 478889999999999889999999999999999778888888888877654

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=2.7e-28  Score=212.24  Aligned_cols=204  Identities=29%  Similarity=0.426  Sum_probs=176.6

Q ss_pred             eeEEEEecCCC--CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414           10 CKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (239)
Q Consensus        10 ~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~   86 (239)
                      ||++++...+.  .+++.+.+.|.+.+++|+|+++++++|++|+..+.|.... ..+|.++|||++|+|+++|+++..|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (342)
T cd08266           1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVK   80 (342)
T ss_pred             CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCC
Confidence            68898874332  2888888888899999999999999999999988876432 24578999999999999999999999


Q ss_pred             CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (239)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~  166 (239)
                      +||+|++.+...|+.|.+|..+.++.|.....   .|.. .                  .|+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~-~------------------~g~~~~~~~~~~~~~~~~p~~  138 (342)
T cd08266          81 PGQRVVIYPGISCGRCEYCLAGRENLCAQYGI---LGEH-V------------------DGGYAEYVAVPARNLLPIPDN  138 (342)
T ss_pred             CCCEEEEccccccccchhhccccccccccccc---cccc-c------------------CcceeEEEEechHHceeCCCC
Confidence            99999999999999999999999999986432   2221 2                  238999999999999999999


Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      +++.+++.+++++.++++++.....++++++++|+|+ +.+|++++++++..|+ +++++++++++.+.+.
T Consensus       139 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~~~~~~~~~~~~~  208 (342)
T cd08266         139 LSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLERAK  208 (342)
T ss_pred             CCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            9999999998889999998878888999999999988 7999999999999999 7888888888777654

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.96  E-value=3.1e-28  Score=212.39  Aligned_cols=203  Identities=33%  Similarity=0.489  Sum_probs=177.3

Q ss_pred             eEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCCE
Q 026414           11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDH   90 (239)
Q Consensus        11 ~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~   90 (239)
                      |++++.+++..+++++.|.|.+++++|+|++.++++|++|.....+......+|.++|||++|+|+++|+++++|++||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd~   80 (330)
T cd08245           1 KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHEIVGEVVEVGAGVEGRKVGDR   80 (330)
T ss_pred             CeEEEecCCCCceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCCCCCCcccCccceEEEEEECCCCcccccCCE
Confidence            67888888666999999999999999999999999999999998876544456789999999999999999999999999


Q ss_pred             EeecCc-cCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCc
Q 026414           91 VIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (239)
Q Consensus        91 V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~  169 (239)
                      |++.+. ..|++|++|.++..+.|.+...   .+.. .+                  |+|++|+.++.+.++++|+++++
T Consensus        81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~v~~~~~~~~p~~~~~  138 (330)
T cd08245          81 VGVGWLVGSCGRCEYCRRGLENLCQKAVN---TGYT-TQ------------------GGYAEYMVADAEYTVLLPDGLPL  138 (330)
T ss_pred             EEEccccCCCCCChhhhCcCcccCcCccc---cCcc-cC------------------CccccEEEEcHHHeEECCCCCCH
Confidence            987665 5799999999999999997532   1211 12                  38999999999999999999999


Q ss_pred             hhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      .+++.+.+...+||.++. ...++++++|||+|+|.+|++++++++.+|+ +|+++++++++.+.+.+
T Consensus       139 ~~~~~l~~~~~ta~~~l~-~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~  204 (330)
T cd08245         139 AQAAPLLCAGITVYSALR-DAGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARK  204 (330)
T ss_pred             HHhhhhhhhHHHHHHHHH-hhCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            999999989999999774 4789999999999888899999999999999 89999999988877643

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=99.96  E-value=3.5e-28  Score=213.39  Aligned_cols=203  Identities=29%  Similarity=0.431  Sum_probs=169.7

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCC---CCCCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---PEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~~~~p~~~G~e~vG~Vv~vG~~v~~~~   86 (239)
                      ||++++..+++.+++.+.|.|.|+++||+||++++++|++|+.++.+..   ....+|.++|||++|+|+++|++++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~   80 (341)
T PRK05396          1 MKALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFK   80 (341)
T ss_pred             CceEEEecCCCceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCC
Confidence            6899999888889999999999999999999999999999998765531   1224677899999999999999999999


Q ss_pred             CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (239)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~  166 (239)
                      +||+|+..+..+|+.|.+|..+..++|.+...   .+.. .+                  |+|++|+.++...++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~v~~~~~~~iP~~  138 (341)
T PRK05396         81 VGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKG---VGVN-RP------------------GAFAEYLVIPAFNVWKIPDD  138 (341)
T ss_pred             CCCEEEECCCCCCCCChhhhCcChhhCCCcce---eeec-CC------------------CcceeeEEechHHeEECcCC
Confidence            99999999999999999999999999976421   1211 22                  49999999999999999999


Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++.+++.+ ..+.+++.++..  ...+|++|+|.|+|.+|++++++++++|+++++++++++++.+++.+
T Consensus       139 l~~~~~~~~-~~~~~~~~~~~~--~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~  206 (341)
T PRK05396        139 IPDDLAAIF-DPFGNAVHTALS--FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARK  206 (341)
T ss_pred             CCHHHhHhh-hHHHHHHHHHHc--CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            998888754 455556554432  34689999999889999999999999998678888888888776543

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.96  E-value=6.6e-28  Score=211.73  Aligned_cols=203  Identities=31%  Similarity=0.450  Sum_probs=169.6

Q ss_pred             eeEEEEecCCCCeEEEeecCCCC-CCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G   88 (239)
                      ||++++++++. +++++.|.|.| +++||+||++++++|++|+....|..+. ..|.++|||++|+|+++|+++.++++|
T Consensus         1 m~~~~~~~~~~-~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~vG~~v~~~~~G   78 (345)
T cd08287           1 MRATVIHGPGD-IRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPT-RAPAPIGHEFVGVVEEVGSEVTSVKPG   78 (345)
T ss_pred             CceeEEecCCc-eeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCCC-CCCcccccceEEEEEEeCCCCCccCCC
Confidence            78999998776 99999999996 9999999999999999999888776543 457899999999999999999999999


Q ss_pred             CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc--eeEecCCC
Q 026414           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ  166 (239)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~p~~  166 (239)
                      |+|+......|+.|..|..++.+.|.....   .|.. .+|                  +|++|+.++..  .++++|++
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~g------------------~~~~~~~v~~~~~~~~~lP~~  136 (345)
T cd08287          79 DFVIAPFAISDGTCPFCRAGFTTSCVHGGF---WGAF-VDG------------------GQGEYVRVPLADGTLVKVPGS  136 (345)
T ss_pred             CEEEeccccCCCCChhhhCcCcccCCCCCc---ccCC-CCC------------------ceEEEEEcchhhCceEECCCC
Confidence            999886677899999999999999985432   1211 333                  99999999874  99999999


Q ss_pred             CCchhhh-----hcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          167 APLDKVC-----LLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       167 ~~~~~aa-----~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++..+.     .+...+.+|++++ ....++++++|+|.|+|.+|++++++|+++|++.++++++++++.+++++
T Consensus       137 l~~~~~~~~~~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~  211 (345)
T cd08287         137 PSDDEDLLPSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALARE  211 (345)
T ss_pred             CChhhhhhhhhHhhhcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            9872211     1225677888876 57788999999998889999999999999999679999988888776553

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.96  E-value=7.5e-28  Score=211.07  Aligned_cols=202  Identities=33%  Similarity=0.534  Sum_probs=174.6

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd   89 (239)
                      ||++++.+++. +++++.+.|++.+++|+||++++++|+.|+....+......+|.++|+|++|+|+++|++++.+++||
T Consensus         1 ~~~~~~~~~~~-~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~~~~~~~~~g~~~~G~V~~~G~~v~~~~~Gd   79 (343)
T cd08235           1 MKAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHEIAGEIVEVGDGVTGFKVGD   79 (343)
T ss_pred             CeEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCccCCCCcccccceEEEEEeeCCCCCCCCCCC
Confidence            68999988875 99999999999999999999999999999998887653334577899999999999999999999999


Q ss_pred             EEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecce-----eEecC
Q 026414           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS-----VAKID  164 (239)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~p  164 (239)
                      +|+..++..|+.|++|..++.+.|.....   .|.. .                  .|+|++|+.++...     ++++|
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~v~v~~~~~~~~~~~~lP  137 (343)
T cd08235          80 RVFVAPHVPCGECHYCLRGNENMCPNYKK---FGNL-Y------------------DGGFAEYVRVPAWAVKRGGVLKLP  137 (343)
T ss_pred             EEEEccCCCCCCChHHHCcCcccCCCcce---eccC-C------------------CCcceeeEEecccccccccEEECC
Confidence            99999999999999999999998886542   1211 2                  24999999999988     99999


Q ss_pred             CCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      +++++.+++.+ .++.+||+++. ...+++|++|||+|+|.+|.+++++|+.+|++.++++++++++.+.+.
T Consensus       138 ~~~~~~~aa~~-~~~~~a~~~l~-~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~  207 (343)
T cd08235         138 DNVSFEEAALV-EPLACCINAQR-KAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAK  207 (343)
T ss_pred             CCCCHHHHHhh-hHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence            99999998876 67889999774 458999999999988999999999999999944888888888777653

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.96  E-value=1.7e-27  Score=208.00  Aligned_cols=201  Identities=33%  Similarity=0.518  Sum_probs=175.8

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd   89 (239)
                      |||+++.++++ +++.+.+.|+++++||+||++++++|+.|+....|..+. .+|.++|+|++|+|+++|++++++++||
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~-~~p~~~g~~~~G~v~~vG~~v~~~~~Gd   78 (334)
T cd08234           1 MKALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA-APPLVPGHEFAGVVVAVGSKVTGFKVGD   78 (334)
T ss_pred             CeeEEecCCCc-eEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC-CCCcccccceEEEEEEeCCCCCCCCCCC
Confidence            68999998886 999999999999999999999999999999988886543 3778999999999999999999999999


Q ss_pred             EEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCc
Q 026414           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (239)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~  169 (239)
                      +|+..+...|++|.+|..+..+.|.....   .|.. .+                  |+|++|+.++...++++|+++++
T Consensus        79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~v~~~~~~~lP~~~~~  136 (334)
T cd08234          79 RVAVDPNIYCGECFYCRRGRPNLCENLTA---VGVT-RN------------------GGFAEYVVVPAKQVYKIPDNLSF  136 (334)
T ss_pred             EEEEcCCcCCCCCccccCcChhhCCCcce---eccC-CC------------------CcceeEEEecHHHcEECcCCCCH
Confidence            99999988999999999998888876532   2111 22                  39999999999999999999999


Q ss_pred             hhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      .+++.+ ..+.++++++ ...++++++++||+|+|.+|.++++++++.|+..++++++++++.+.+.
T Consensus       137 ~~aa~~-~~~~~a~~~l-~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~  201 (334)
T cd08234         137 EEAALA-EPLSCAVHGL-DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAK  201 (334)
T ss_pred             HHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence            888766 6777888876 7888999999999988999999999999999955888998888887764

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.96  E-value=1.6e-27  Score=209.14  Aligned_cols=201  Identities=32%  Similarity=0.516  Sum_probs=175.3

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd   89 (239)
                      |||+++++.++ +.+++.+.|+++++||+||++++++|+.|+....+.+.. .+|.++|+|++|+|+++|++++.|++||
T Consensus         1 ~~a~~~~~~~~-l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~~-~~~~~~g~~~~G~V~~~g~~v~~~~~Gd   78 (343)
T cd08236           1 MKALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGAY-HPPLVLGHEFSGTVEEVGSGVDDLAVGD   78 (343)
T ss_pred             CeeEEEecCCc-eeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCCCC-CCCcccCcceEEEEEEECCCCCcCCCCC
Confidence            68999998876 999999999999999999999999999999888776522 4577899999999999999999999999


Q ss_pred             EEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCc
Q 026414           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (239)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~  169 (239)
                      +|+..+...|+.|++|..+..+.|+....   .|.. .                  .|+|++|+.++.+.++++|+++++
T Consensus        79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~~~~~~~~~lP~~~~~  136 (343)
T cd08236          79 RVAVNPLLPCGKCEYCKKGEYSLCSNYDY---IGSR-R------------------DGAFAEYVSVPARNLIKIPDHVDY  136 (343)
T ss_pred             EEEEcCCCCCCCChhHHCcChhhCCCcce---Eecc-c------------------CCcccceEEechHHeEECcCCCCH
Confidence            99999888999999999999999987532   2211 2                  249999999999999999999999


Q ss_pred             hhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ++++.+ ....++|+++. ...++++++|||+|+|.+|.+++++|+++|+..++++++++++.+.+.
T Consensus       137 ~~aa~~-~~~~ta~~~l~-~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~  201 (343)
T cd08236         137 EEAAMI-EPAAVALHAVR-LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAR  201 (343)
T ss_pred             HHHHhc-chHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence            999887 57789999774 778999999999988999999999999999955999988888777654

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=99.96  E-value=1.8e-27  Score=209.19  Aligned_cols=201  Identities=35%  Similarity=0.540  Sum_probs=169.5

Q ss_pred             EEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCC-CC--CCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414           12 AAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DP--EGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (239)
Q Consensus        12 a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~-~~--~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G   88 (239)
                      +++++++.. +++++.+.|.+.++||+|||.++++|+.|...+.+. ..  ...+|.++|+|++|+|+++|+++++|++|
T Consensus         1 ~~~~~~~~~-~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G   79 (343)
T cd05285           1 AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVG   79 (343)
T ss_pred             CceEecCCc-eeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCC
Confidence            356777755 999999999999999999999999999998876422 11  11356789999999999999999999999


Q ss_pred             CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCC
Q 026414           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (239)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~  168 (239)
                      |+|++.+..+|++|.+|..+..+.|.+....   +....+                  |+|++|+.++.+.++++|++++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~------------------g~~~~~~~v~~~~~~~lP~~~~  138 (343)
T cd05285          80 DRVAIEPGVPCRTCEFCKSGRYNLCPDMRFA---ATPPVD------------------GTLCRYVNHPADFCHKLPDNVS  138 (343)
T ss_pred             CEEEEccccCCCCChhHhCcCcccCcCcccc---ccccCC------------------CceeeeEEecHHHcEECcCCCC
Confidence            9999999999999999999999999865321   110022                  3999999999999999999999


Q ss_pred             chhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      +++++.+ .++.+|++++ ....+++|+++||.|+|.+|.+++++|+.+|++.|+++++++++.+.++
T Consensus       139 ~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~  204 (343)
T cd05285         139 LEEGALV-EPLSVGVHAC-RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAK  204 (343)
T ss_pred             HHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence            9998876 4778888875 8889999999999988999999999999999955899988888877654

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.96  E-value=3.2e-27  Score=206.86  Aligned_cols=203  Identities=29%  Similarity=0.478  Sum_probs=166.8

Q ss_pred             EEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhc-CCCC--CCCCCeeeeeeEEEEEEEeCCCCCCCCCCCE
Q 026414           14 VAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDP--EGLFPCILGHEAAGIVESVGEGVTEVQPGDH   90 (239)
Q Consensus        14 ~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~-g~~~--~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~   90 (239)
                      ++++.++ +++++.+.|.++++||+||+.++++|++|..... +...  ...+|.++|+|++|+|+++|+++++|++||+
T Consensus         2 ~~~~~~~-~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~   80 (339)
T cd08232           2 VIHAAGD-LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQR   80 (339)
T ss_pred             eeccCCc-eEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCE
Confidence            4666766 9999999999999999999999999999988763 3221  1245778999999999999999999999999


Q ss_pred             EeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCch
Q 026414           91 VIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLD  170 (239)
Q Consensus        91 V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~  170 (239)
                      |+..+...|+.|.+|..++.+.|.....   .|....+              ....|+|++|+.++.+.++++|++++++
T Consensus        81 V~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~--------------~~~~g~~~~~v~v~~~~~~~iP~~~~~~  143 (339)
T cd08232          81 VAVNPSRPCGTCDYCRAGRPNLCLNMRF---LGSAMRF--------------PHVQGGFREYLVVDASQCVPLPDGLSLR  143 (339)
T ss_pred             EEEccCCcCCCChHHhCcCcccCccccc---eeecccc--------------CCCCCceeeEEEechHHeEECcCCCCHH
Confidence            9999988999999999999999997431   1110000              0013499999999999999999999998


Q ss_pred             hhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          171 KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       171 ~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      +++. ..++.++|+++...... ++++|||.|+|.+|.+++++++.+|+.+++++++++++.++++
T Consensus       144 ~aa~-~~~~~~a~~~l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~  207 (339)
T cd08232         144 RAAL-AEPLAVALHAVNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVAR  207 (339)
T ss_pred             Hhhh-cchHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence            8876 56788899877555555 8999999988999999999999999867899988888777654

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.96  E-value=5.7e-27  Score=205.45  Aligned_cols=204  Identities=34%  Similarity=0.526  Sum_probs=176.3

Q ss_pred             eeEEEEecCC-CCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414           10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQP   87 (239)
Q Consensus        10 ~~a~~~~~~~-~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~~   87 (239)
                      |||+++..++ ..+++++++.|.+.++||+||+.++++|++|...+.+..+. ...|.++|||++|+|+++|++++.+++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~~   80 (341)
T cd08297           1 MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLKV   80 (341)
T ss_pred             CceEEeeccCCCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCCC
Confidence            7899998776 34999999999999999999999999999999988776532 234668899999999999999999999


Q ss_pred             CCEEeecC-ccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414           88 GDHVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (239)
Q Consensus        88 Gd~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~  166 (239)
                      ||+|+..+ ...|++|.+|..++...|.+...   .|+. .                  .|+|++|+.++...++++|++
T Consensus        81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~s~~~~~~~~~~~lp~~  138 (341)
T cd08297          81 GDRVGVKWLYDACGKCEYCRTGDETLCPNQKN---SGYT-V------------------DGTFAEYAIADARYVTPIPDG  138 (341)
T ss_pred             CCEEEEecCCCCCCCCccccCCCcccCCCccc---cccc-c------------------CCcceeEEEeccccEEECCCC
Confidence            99998765 67899999999999999986533   2221 1                  238999999999999999999


Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++.+++.++....|||+++.. .++++++++||+|+ +.+|++++++++++|+ +++++.+++++.+.+.+
T Consensus       139 ~~~~~~a~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~  208 (341)
T cd08297         139 LSFEQAAPLLCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLELAKE  208 (341)
T ss_pred             CCHHHHHHHHcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH
Confidence            9999999999999999997744 58999999999988 7799999999999999 89999999888877643

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=99.96  E-value=1.9e-27  Score=207.42  Aligned_cols=177  Identities=23%  Similarity=0.239  Sum_probs=150.2

Q ss_pred             eeEEEEecCCC-----CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCC
Q 026414           10 CKAAVAWEPNK-----PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVT   83 (239)
Q Consensus        10 ~~a~~~~~~~~-----~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~   83 (239)
                      ||++++.+++.     .+++.++|.|.|+++||+||++++++|++|+..+.|.++. ..+|.++|||++|+|+++|++++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~   80 (324)
T cd08291           1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPL   80 (324)
T ss_pred             CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCcc
Confidence            78999998874     3888999999999999999999999999999998886543 35688999999999999999999


Q ss_pred             C-CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEe
Q 026414           84 E-VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK  162 (239)
Q Consensus        84 ~-~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  162 (239)
                      + |++||+|+..+.                              .+|                  +|++|+.+|...+++
T Consensus        81 ~~~~vGd~V~~~~~------------------------------~~g------------------~~a~~~~v~~~~~~~  112 (324)
T cd08291          81 AQSLIGKRVAFLAG------------------------------SYG------------------TYAEYAVADAQQCLP  112 (324)
T ss_pred             ccCCCCCEEEecCC------------------------------CCC------------------cchheeeecHHHeEE
Confidence            6 999999985321                              123                  899999999999999


Q ss_pred             cCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEE--cCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF--GLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       163 ~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~--G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +|+++++++++.+++...|||. +...... ++++++|+  |+|.+|++++|+|+++|+ ++++++++++|++.+++
T Consensus       113 iP~~~~~~~aa~~~~~~~ta~~-~~~~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~~  186 (324)
T cd08291         113 LPDGVSFEQGASSFVNPLTALG-MLETARE-EGAKAVVHTAAASALGRMLVRLCKADGI-KVINIVRRKEQVDLLKK  186 (324)
T ss_pred             CCCCCCHHHHhhhcccHHHHHH-HHHhhcc-CCCcEEEEccCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence            9999999999988888889975 4455555 55566664  459999999999999999 89999999999888754

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.95  E-value=8.3e-27  Score=202.21  Aligned_cols=203  Identities=30%  Similarity=0.512  Sum_probs=169.9

Q ss_pred             eeEEEEecCC-CCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414           10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (239)
Q Consensus        10 ~~a~~~~~~~-~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G   88 (239)
                      ||++++.+++ +.+++++++.|.+.+++|+||+.++++|++|.....+.......|.++|+|++|+|+++|++++.|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   80 (306)
T cd08258           1 MKALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVEGWKVG   80 (306)
T ss_pred             CeeEEEecCCCCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCcCCCCeeeccceEEEEEEECCCcCcCCCC
Confidence            5788888655 359999999999999999999999999999998888765333457899999999999999999999999


Q ss_pred             CEEeecCc-cCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCC
Q 026414           89 DHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (239)
Q Consensus        89 d~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~  167 (239)
                      |+|+..+. ..|+.|++|..+....|.....   .|.. .                  .|+|++|+.++...++++|+++
T Consensus        81 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~v~~~~~~~lp~~~  138 (306)
T cd08258          81 DRVVSETTFSTCGRCPYCRRGDYNLCPHRKG---IGTQ-A------------------DGGFAEYVLVPEESLHELPENL  138 (306)
T ss_pred             CEEEEccCcCCCCCCcchhCcCcccCCCCce---eeec-C------------------CCceEEEEEcchHHeEECcCCC
Confidence            99988774 6899999999999998875321   1211 1                  2499999999999999999999


Q ss_pred             CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc--CChhhHhhhh
Q 026414          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDREF  236 (239)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~--~~~~~~~~~~  236 (239)
                      ++++++ +.....++|+++.....++++++|||.|+|.+|.+++++++++|+ +|+++.  +++++.+++.
T Consensus       139 ~~~~aa-~~~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~-~v~~~~~~~~~~~~~~~~  207 (306)
T cd08258         139 SLEAAA-LTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGA-TVVVVGTEKDEVRLDVAK  207 (306)
T ss_pred             CHHHHH-hhchHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEECCCCCHHHHHHHH
Confidence            998887 666788899988888889999999998889999999999999998 676663  3444555543

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=99.95  E-value=7e-27  Score=202.97  Aligned_cols=176  Identities=27%  Similarity=0.319  Sum_probs=153.2

Q ss_pred             eeEEEEecCCCC---eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC-CCCCCeeeeeeEEEEEEEeCCCCCCC
Q 026414           10 CKAAVAWEPNKP---LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTEV   85 (239)
Q Consensus        10 ~~a~~~~~~~~~---~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~vG~Vv~vG~~v~~~   85 (239)
                      ||++++.+++.+   ++++++|.|.+.++||+|||+++++|+.|+..+.|..+ ...+|.++|||++|+|+++|++++++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~   80 (324)
T cd08292           1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGL   80 (324)
T ss_pred             CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCC
Confidence            689999877653   88999999999999999999999999999999888654 23568899999999999999999999


Q ss_pred             CCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCC
Q 026414           86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (239)
Q Consensus        86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~  165 (239)
                      ++||+|...+.                               +                  |+|++|+.++...++++|+
T Consensus        81 ~~Gd~V~~~~~-------------------------------~------------------g~~~~~~~~~~~~~~~ip~  111 (324)
T cd08292          81 QVGQRVAVAPV-------------------------------H------------------GTWAEYFVAPADGLVPLPD  111 (324)
T ss_pred             CCCCEEEeccC-------------------------------C------------------CcceeEEEEchHHeEECCC
Confidence            99999985421                               1                  3899999999999999999


Q ss_pred             CCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ++++++++.+.+...++|+++ ...++++|++|||+|+ |.+|++++++|+++|+ .++++..++++.+.++
T Consensus       112 ~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~~~~~~~~~  181 (324)
T cd08292         112 GISDEVAAQLIAMPLSALMLL-DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGI-NVINLVRRDAGVAELR  181 (324)
T ss_pred             CCCHHHhhhccccHHHHHHHH-HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHH
Confidence            999999999988889999866 5678999999999987 9999999999999999 7777777776666553

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>cd05281 TDH Threonine dehydrogenase

Probab=99.95  E-value=1.3e-26  Score=203.57  Aligned_cols=202  Identities=33%  Similarity=0.448  Sum_probs=168.2

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCC---CCCCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---PEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~~~~p~~~G~e~vG~Vv~vG~~v~~~~   86 (239)
                      ||+++++.++..+.+.+.+.|.|.++|++||++++++|+.|+..+.+..   ....+|.++|||++|+|+.+|++++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~   80 (341)
T cd05281           1 MKAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVK   80 (341)
T ss_pred             CcceEEecCCCceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCC
Confidence            6899999888779999999999999999999999999999988754421   1224567899999999999999999999


Q ss_pred             CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (239)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~  166 (239)
                      +||+|+..+..+|+.|.+|..+..+.|... .  ..|..                   ..|+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~-------------------~~g~~~~~v~v~~~~~~~lP~~  138 (341)
T cd05281          81 VGDYVSAETHIVCGKCYQCRTGNYHVCQNT-K--ILGVD-------------------TDGCFAEYVVVPEENLWKNDKD  138 (341)
T ss_pred             CCCEEEECCccCCCCChHHHCcCcccCccc-c--eEecc-------------------CCCcceEEEEechHHcEECcCC
Confidence            999999999999999999999999999742 1  11211                   1348999999999999999999


Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ++.+.+ .+...+.++++++.  ...++|++|||.|+|.+|++++++++++|+.++++++++++|.+++.
T Consensus       139 ~~~~~a-~~~~~~~~a~~~~~--~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~  205 (341)
T cd05281         139 IPPEIA-SIQEPLGNAVHTVL--AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAK  205 (341)
T ss_pred             CCHHHh-hhhhHHHHHHHHHH--hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence            987544 55557778887653  45578999999988999999999999999867888888888877654

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.95  E-value=1.7e-27  Score=204.15  Aligned_cols=156  Identities=26%  Similarity=0.418  Sum_probs=131.8

Q ss_pred             eeeeeEEEEEEEeCCCCC------CCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcc
Q 026414           66 ILGHEAAGIVESVGEGVT------EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKP  139 (239)
Q Consensus        66 ~~G~e~vG~Vv~vG~~v~------~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~  139 (239)
                      ++|||++|+|+++|++++      +|++||||++.+..+|++|.+|+.++.+.|.+....   |....++          
T Consensus         1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~---g~~~~~~----------   67 (280)
T TIGR03366         1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKY---GHEALDS----------   67 (280)
T ss_pred             CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhhc---CcccccC----------
Confidence            579999999999999999      899999999999999999999999999999875432   2110000          


Q ss_pred             eeeecCCcceeeeEEEecc-eeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC
Q 026414          140 IYHFMGTSTFSQYTVVHDV-SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG  218 (239)
Q Consensus       140 ~~~~~~~g~~~~~~~~~~~-~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G  218 (239)
                        .....|+|+||+.+|.. .++++|+++++++++.+.++..|+|+++ ......++++|||+|+|++|++++|+|+++|
T Consensus        68 --~~~~~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G  144 (280)
T TIGR03366        68 --GWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAAL-EAAGDLKGRRVLVVGAGMLGLTAAAAAAAAG  144 (280)
T ss_pred             --CccccccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHH-HhccCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence              00012499999999987 7999999999999999998989999876 4556679999999999999999999999999


Q ss_pred             CCeEEEEcCChhhHhhhhh
Q 026414          219 ASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       219 ~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++|++++++++|++++++
T Consensus       145 ~~~Vi~~~~~~~r~~~a~~  163 (280)
T TIGR03366       145 AARVVAADPSPDRRELALS  163 (280)
T ss_pred             CCEEEEECCCHHHHHHHHH
Confidence            9669999999999988765

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.95  E-value=1.3e-26  Score=203.68  Aligned_cols=194  Identities=28%  Similarity=0.294  Sum_probs=159.7

Q ss_pred             eeEEEEecCCCC--eEEEe-ecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC--------------------CCCCCee
Q 026414           10 CKAAVAWEPNKP--LVIED-VQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP--------------------EGLFPCI   66 (239)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~-~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~--------------------~~~~p~~   66 (239)
                      ||++++..++.+  +.+.+ .+.|.+.+++|+|||.++++|++|+.+..|.++                    ...+|.+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   80 (350)
T cd08274           1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI   80 (350)
T ss_pred             CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence            688888776642  55654 577788999999999999999999998876532                    2356889


Q ss_pred             eeeeEEEEEEEeCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCC
Q 026414           67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGT  146 (239)
Q Consensus        67 ~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~  146 (239)
                      +|||++|+|+++|+++++|++||+|+..+...|++|..|..     |..      .|.. .+|                 
T Consensus        81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~-----~~~------~~~~-~~g-----------------  131 (350)
T cd08274          81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPAD-----IDY------IGSE-RDG-----------------  131 (350)
T ss_pred             cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCcccccc-----ccc------cCCC-CCc-----------------
Confidence            99999999999999999999999999988888887766421     111      1111 123                 


Q ss_pred             cceeeeEEEecceeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE
Q 026414          147 STFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI  225 (239)
Q Consensus       147 g~~~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~  225 (239)
                       +|++|+.++.+.++++|+++++.+++.+.+++.|+|+++ ....+++|++|||+|+ |.+|++++++++++|+ +++++
T Consensus       132 -~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~vi~~  208 (350)
T cd08274         132 -GFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAV  208 (350)
T ss_pred             -cceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCC-EEEEE
Confidence             899999999999999999999999999999999999976 7788999999999998 9999999999999999 67777


Q ss_pred             cCChhhHhhhh
Q 026414          226 DIDPKKFDREF  236 (239)
Q Consensus       226 ~~~~~~~~~~~  236 (239)
                      ++++ +.+.++
T Consensus       209 ~~~~-~~~~~~  218 (350)
T cd08274         209 AGAA-KEEAVR  218 (350)
T ss_pred             eCch-hhHHHH
Confidence            7665 666654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=99.95  E-value=8.6e-27  Score=203.67  Aligned_cols=180  Identities=22%  Similarity=0.277  Sum_probs=154.5

Q ss_pred             eEEEEecC---CC--CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCC
Q 026414           11 KAAVAWEP---NK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV   85 (239)
Q Consensus        11 ~a~~~~~~---~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~   85 (239)
                      ||+++..+   +.  .++++|+|.|+|+++||+|||+++++|+.|...+.+..+...+|.++|+|++|+|+++|++++.|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~   80 (336)
T TIGR02817         1 KAVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQPKILGWDAAGVVVAVGDEVTLF   80 (336)
T ss_pred             CceeeccccCCCCcccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence            56677665   33  38889999999999999999999999999998887765444568899999999999999999999


Q ss_pred             CCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCC
Q 026414           86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (239)
Q Consensus        86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~  165 (239)
                      ++||+|+....                           .. .+                  |+|++|+.++.+.++++|+
T Consensus        81 ~~Gd~V~~~~~---------------------------~~-~~------------------g~~~~~~~v~~~~~~~ip~  114 (336)
T TIGR02817        81 KPGDEVWYAGD---------------------------ID-RP------------------GSNAEFHLVDERIVGHKPK  114 (336)
T ss_pred             CCCCEEEEcCC---------------------------CC-CC------------------CcccceEEEcHHHcccCCC
Confidence            99999974310                           00 12                  3899999999999999999


Q ss_pred             CCCchhhhhcccccchhhhhhhhhcCCCC-----CCEEEEEcC-CHHHHHHHHHHHHc-CCCeEEEEcCChhhHhhhhh
Q 026414          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEP-----GSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~-----g~~vlI~G~-g~~g~~ai~~~~~~-G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++++++++.++++..|||+++....++++     |++|||+|+ |.+|++++|+|+++ |+ +|+++.+++++.+.+++
T Consensus       115 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~-~vi~~~~~~~~~~~l~~  192 (336)
T TIGR02817       115 SLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGL-TVIATASRPESQEWVLE  192 (336)
T ss_pred             CCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCC-EEEEEcCcHHHHHHHHH
Confidence            99999999999999999998877787776     999999987 99999999999998 98 89999988888877653

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd08293 PTGR2 Prostaglandin reductase

Probab=99.94  E-value=6.5e-26  Score=199.05  Aligned_cols=165  Identities=20%  Similarity=0.244  Sum_probs=136.7

Q ss_pred             eEEEeecCCCC-CCCeEEEEEeEeeechhhhhhhc---CCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCCEEeecCcc
Q 026414           22 LVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWS---GKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQA   97 (239)
Q Consensus        22 ~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~---g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~   97 (239)
                      ++++|.|.|+| ++|||||||++++||+.|.....   +.....++|.++|||++|+|+++|+++++|++||+|+...  
T Consensus        23 ~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~--  100 (345)
T cd08293          23 FRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSFN--  100 (345)
T ss_pred             eEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEecC--
Confidence            88999999987 49999999999999999864332   1111124678999999999999999999999999997421  


Q ss_pred             CCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCchh----hh
Q 026414           98 ECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK----VC  173 (239)
Q Consensus        98 ~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~----aa  173 (239)
                                                                       ++|++|+.++.+.++++|+++++.+    ++
T Consensus       101 -------------------------------------------------~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a  131 (345)
T cd08293         101 -------------------------------------------------WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLG  131 (345)
T ss_pred             -------------------------------------------------CCceeEEEecHHHeEEcCccccccchhHHhh
Confidence                                                             1799999999999999999864332    44


Q ss_pred             hcccccchhhhhhhhhcCCCCC--CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          174 LLGCGVPTGLGAVWNTAKVEPG--SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       174 ~l~~~~~ta~~~~~~~~~~~~g--~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      .+..++.|||+++....++++|  ++|||+|+ |++|++++|+|+++|+.+|++++++++|.+.+.+
T Consensus       132 ~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~  198 (345)
T cd08293         132 AVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKS  198 (345)
T ss_pred             hcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            5667889999988777788877  99999988 9999999999999998679999999988887654

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.94  E-value=7.1e-26  Score=198.78  Aligned_cols=198  Identities=29%  Similarity=0.409  Sum_probs=165.5

Q ss_pred             EecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCC---CCCCCCeeeeeeEEEEEEEeCCCCCCCCCCCEE
Q 026414           15 AWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV   91 (239)
Q Consensus        15 ~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V   91 (239)
                      -+.++.++++++.|.|.|+++||+||+.++++|+.|...+.+..   ....+|.++|+|++|+|+++|+++++|++||+|
T Consensus         4 ~~~~~~~~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V   83 (340)
T TIGR00692         4 KTKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYV   83 (340)
T ss_pred             cccCCCCcEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEE
Confidence            45678889999999999999999999999999999998765532   112356789999999999999999999999999


Q ss_pred             eecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCchh
Q 026414           92 IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK  171 (239)
Q Consensus        92 ~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~  171 (239)
                      +..+...|++|..|..+....|.+...   .|.. .                  .|+|++|+.++.+.++++|++++++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~~~~~~~~~lp~~~~~~~  141 (340)
T TIGR00692        84 SVETHIVCGKCYACRRGQYHVCQNTKI---FGVD-T------------------DGCFAEYAVVPAQNIWKNPKSIPPEY  141 (340)
T ss_pred             EECCcCCCCCChhhhCcChhhCcCcce---Eeec-C------------------CCcceeEEEeehHHcEECcCCCChHh
Confidence            999999999999999999999998532   1221 1                  24899999999999999999999865


Q ss_pred             hhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          172 VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       172 aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      + .++.++.++++++  ....++|++++|.|+|.+|.+++++++++|.+.|++++++++|.+++++
T Consensus       142 a-~~~~~~~~a~~~~--~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~  204 (340)
T TIGR00692       142 A-TIQEPLGNAVHTV--LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKK  204 (340)
T ss_pred             h-hhcchHHHHHHHH--HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence            5 4566788888765  3456789999998889999999999999998558888888888776543

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=99.94  E-value=6.3e-26  Score=198.71  Aligned_cols=177  Identities=29%  Similarity=0.383  Sum_probs=153.0

Q ss_pred             eeEEEEecCCCC---eEEEeecCCCCCC-CeEEEEEeEeeechhhhhhhcCCCCCC-C----CCeeeeeeEEEEEEEeCC
Q 026414           10 CKAAVAWEPNKP---LVIEDVQVAPPQA-GEVRIKILFTALCHTDAYTWSGKDPEG-L----FPCILGHEAAGIVESVGE   80 (239)
Q Consensus        10 ~~a~~~~~~~~~---~~~~~~~~p~~~~-~eVlVkv~~~~i~~~D~~~~~g~~~~~-~----~p~~~G~e~vG~Vv~vG~   80 (239)
                      |||+++..++.+   +++++.|.|.|.+ +||+||+.++++|+.|...+.+..+.. .    +|.++|||++|+|+++|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~   80 (341)
T cd08290           1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS   80 (341)
T ss_pred             CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence            789999988875   8999999999887 999999999999999999888765321 2    567899999999999999


Q ss_pred             CCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEeccee
Q 026414           81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV  160 (239)
Q Consensus        81 ~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  160 (239)
                      +++.|++||+|+....                              .                  .|+|++|+.++...+
T Consensus        81 ~v~~~~~Gd~V~~~~~------------------------------~------------------~g~~~~~~~v~~~~~  112 (341)
T cd08290          81 GVKSLKPGDWVIPLRP------------------------------G------------------LGTWRTHAVVPADDL  112 (341)
T ss_pred             CCCCCCCCCEEEecCC------------------------------C------------------CccchheEeccHHHe
Confidence            9999999999985421                              1                  138999999999999


Q ss_pred             EecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh----hhHhhh
Q 026414          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP----KKFDRE  235 (239)
Q Consensus       161 ~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~----~~~~~~  235 (239)
                      +++|+++++++++.+++++.|+|+++.....++++++|||+|+ |.+|++++++|++.|+ +++++.+++    ++.+.+
T Consensus       113 ~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~  191 (341)
T cd08290         113 IKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGI-KTINVVRDRPDLEELKERL  191 (341)
T ss_pred             EeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCC-eEEEEEcCCCcchhHHHHH
Confidence            9999999999999999999999998877788999999999987 9999999999999998 677766654    445544

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=99.94  E-value=1.1e-25  Score=195.99  Aligned_cols=179  Identities=26%  Similarity=0.291  Sum_probs=157.6

Q ss_pred             ceeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414            9 TCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (239)
Q Consensus         9 ~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~   86 (239)
                      +||++++++++.+  +++++++.|.++++||+||+.++++|++|+....+.++...+|.++|||++|+|+.+|++++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~   80 (327)
T PRK10754          1 MAKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVSKVGSGVKHIK   80 (327)
T ss_pred             CceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCCCCCCCccCcceEEEEEEeCCCCCCCC
Confidence            5899999887663  89999999999999999999999999999998887765445678899999999999999999999


Q ss_pred             CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (239)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~  166 (239)
                      +||+|+....                              .                  .|+|++|+.++...++++|++
T Consensus        81 ~Gd~V~~~~~------------------------------~------------------~g~~~~~v~v~~~~~~~lp~~  112 (327)
T PRK10754         81 VGDRVVYAQS------------------------------A------------------LGAYSSVHNVPADKAAILPDA  112 (327)
T ss_pred             CCCEEEECCC------------------------------C------------------CcceeeEEEcCHHHceeCCCC
Confidence            9999974211                              1                  138999999999999999999


Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      +++++++.+.+...++|.++.....+++|++|+|+|+ |.+|++++++++.+|+ +++++++++++.+.++
T Consensus       113 ~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~-~v~~~~~~~~~~~~~~  182 (327)
T PRK10754        113 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGSAQKAQRAK  182 (327)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            9999999888888999998877788999999999976 9999999999999999 7888988888877664

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=8.1e-25  Score=190.41  Aligned_cols=199  Identities=27%  Similarity=0.336  Sum_probs=163.7

Q ss_pred             eeEEEEecCC--CCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414           10 CKAAVAWEPN--KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (239)
Q Consensus        10 ~~a~~~~~~~--~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~   86 (239)
                      |||++++..+  +.+++.+.+.|.++++|++|++.++++|++|+....+..+. ...|.++|||++|+|+++|+.+.+++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (336)
T cd08276           1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFK   80 (336)
T ss_pred             CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCC
Confidence            7899998664  34888899988899999999999999999999988776432 24678899999999999999999999


Q ss_pred             CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (239)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~  166 (239)
                      +||+|+......|+.+.+|      .|... ..  .|                   ....|+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~------~~~~~-~~--~~-------------------~~~~g~~~~~~~~~~~~~~~lp~~  132 (336)
T cd08276          81 VGDRVVPTFFPNWLDGPPT------AEDEA-SA--LG-------------------GPIDGVLAEYVVLPEEGLVRAPDH  132 (336)
T ss_pred             CCCEEEEeccccccccccc------ccccc-cc--cc-------------------cccCceeeeEEEecHHHeEECCCC
Confidence            9999998776655433322      22111 00  11                   111348999999999999999999


Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++.+++.+.+.+.+||+++.....+++|++|+|+|+|.+|++++++++++|+ +++++++++++.+.+.+
T Consensus       133 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~  202 (336)
T cd08276         133 LSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKA  202 (336)
T ss_pred             CCHHHhhhhhHHHHHHHHHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence            99999999999999999988777889999999999889999999999999998 79999998888877643

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=99.93  E-value=4.8e-25  Score=193.45  Aligned_cols=176  Identities=26%  Similarity=0.313  Sum_probs=146.1

Q ss_pred             ceeEEEEecCCC-CeEEEeecC----CCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeE--EEEEEEeCC
Q 026414            9 TCKAAVAWEPNK-PLVIEDVQV----APPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEA--AGIVESVGE   80 (239)
Q Consensus         9 ~~~a~~~~~~~~-~~~~~~~~~----p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~--vG~Vv~vG~   80 (239)
                      -+|++....+.. .|++++.++    |+|++|||||||++++||+.|++.+.|.+.. ..+|.++|++.  .|.+..+|+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~~   86 (338)
T cd08295           7 ILKAYVTGFPKESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVDS   86 (338)
T ss_pred             EEecCCCCCCCccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEec
Confidence            356666544443 499999988    7899999999999999999999998885432 24677888754  455555778


Q ss_pred             CCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEec-ce
Q 026414           81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD-VS  159 (239)
Q Consensus        81 ~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~  159 (239)
                      .++.|++||+|...                                                    |+|+||+++|. ..
T Consensus        87 ~v~~~~vGd~V~~~----------------------------------------------------g~~aey~~v~~~~~  114 (338)
T cd08295          87 GNPDFKVGDLVWGF----------------------------------------------------TGWEEYSLIPRGQD  114 (338)
T ss_pred             CCCCCCCCCEEEec----------------------------------------------------CCceeEEEecchhc
Confidence            88889999999621                                                    27999999999 79


Q ss_pred             eEecC-CCCCch-hhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          160 VAKID-PQAPLD-KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       160 ~~~~p-~~~~~~-~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ++++| +++++. +++.+.+++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++.++++
T Consensus       115 ~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~  193 (338)
T cd08295         115 LRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLK  193 (338)
T ss_pred             eeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            99995 568876 788899999999998878889999999999988 9999999999999999 8999999998888775


Q ss_pred             h
Q 026414          237 W  237 (239)
Q Consensus       237 ~  237 (239)
                      +
T Consensus       194 ~  194 (338)
T cd08295         194 N  194 (338)
T ss_pred             H
Confidence            4

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.93  E-value=5.2e-25  Score=193.44  Aligned_cols=179  Identities=24%  Similarity=0.266  Sum_probs=151.0

Q ss_pred             eeEEEEecCCCC---eEEEeecCCCC-CCCeEEEEEeEeeechhhhhhhcCCCC---------------CCCCCeeeeee
Q 026414           10 CKAAVAWEPNKP---LVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDP---------------EGLFPCILGHE   70 (239)
Q Consensus        10 ~~a~~~~~~~~~---~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~---------------~~~~p~~~G~e   70 (239)
                      |||+++++.+++   ++++|.+.|.| +++||+||++++++|++|+....+...               ...+|.++|||
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e   80 (350)
T cd08248           1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD   80 (350)
T ss_pred             CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence            788998888775   89999999999 499999999999999999998877421               23568899999


Q ss_pred             EEEEEEEeCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCccee
Q 026414           71 AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFS  150 (239)
Q Consensus        71 ~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~  150 (239)
                      ++|+|+++|++++++++||+|+..+..                                              +..|+|+
T Consensus        81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~~----------------------------------------------~~~g~~~  114 (350)
T cd08248          81 CSGVVVDIGSGVKSFEIGDEVWGAVPP----------------------------------------------WSQGTHA  114 (350)
T ss_pred             eEEEEEecCCCcccCCCCCEEEEecCC----------------------------------------------CCCccce
Confidence            999999999999999999999864320                                              0123899


Q ss_pred             eeEEEecceeEecCCCCCchhhhhcccccchhhhhhhhhcCCC----CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE
Q 026414          151 QYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVE----PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI  225 (239)
Q Consensus       151 ~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~----~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~  225 (239)
                      +|+.++...++++|+++++.+++.+.+++.|+|+++.....+.    +|++|+|+|+ |.+|++++++++++|+ .++++
T Consensus       115 ~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~  193 (350)
T cd08248         115 EYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGA-HVTTT  193 (350)
T ss_pred             eEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEE
Confidence            9999999999999999999999999999999999876766665    4999999986 9999999999999999 77777


Q ss_pred             cCChhhHhhhh
Q 026414          226 DIDPKKFDREF  236 (239)
Q Consensus       226 ~~~~~~~~~~~  236 (239)
                      .++ ++.++++
T Consensus       194 ~~~-~~~~~~~  203 (350)
T cd08248         194 CST-DAIPLVK  203 (350)
T ss_pred             eCc-chHHHHH
Confidence            654 4555443

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.93  E-value=8.5e-25  Score=189.78  Aligned_cols=182  Identities=23%  Similarity=0.241  Sum_probs=152.2

Q ss_pred             eeEEEEecCCC--CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414           10 CKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (239)
Q Consensus        10 ~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~   86 (239)
                      |||++++++++  ++++++.|.|.++++||+||+.++++|++|+..+.|..+. ..+|.++|||++|+|+++  +++.++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~   78 (325)
T cd05280           1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFR   78 (325)
T ss_pred             CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCC
Confidence            78999998886  6999999999999999999999999999999988876532 245779999999999999  456899


Q ss_pred             CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (239)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~  166 (239)
                      +||+|+....                        ..|.. .+                  |+|++|+.++.+.++++|++
T Consensus        79 ~Gd~V~~~~~------------------------~~g~~-~~------------------g~~~~~~~v~~~~~~~lp~~  115 (325)
T cd05280          79 EGDEVLVTGY------------------------DLGMN-TD------------------GGFAEYVRVPADWVVPLPEG  115 (325)
T ss_pred             CCCEEEEccc------------------------ccCCC-CC------------------ceeEEEEEEchhhEEECCCC
Confidence            9999986421                        01111 12                  38999999999999999999


Q ss_pred             CCchhhhhcccccchhhhhhhhhc--CCC-CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTA--KVE-PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~--~~~-~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++.+++.+.+.+.++|.++....  ... .+++|+|+|+ |.+|++++++|+++|+ .|+++++++++++.+++
T Consensus       116 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~  189 (325)
T cd05280         116 LSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGY-TVVALTGKEEQADYLKS  189 (325)
T ss_pred             CCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh
Confidence            999999999999999998775443  335 3579999998 9999999999999999 79999999988887654

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.93  E-value=1.1e-24  Score=189.71  Aligned_cols=178  Identities=25%  Similarity=0.266  Sum_probs=154.6

Q ss_pred             ceeEEEEecCCC--CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCC
Q 026414            9 TCKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEV   85 (239)
Q Consensus         9 ~~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~   85 (239)
                      ||||+++.+.++  .+++++.+.|++.++||+|||.++++|+.|.....+..+. ...|.++|||++|+|+++|++++++
T Consensus         1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~   80 (334)
T PTZ00354          1 MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRF   80 (334)
T ss_pred             CcEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence            699999998776  3777888888899999999999999999999888775432 2446789999999999999999999


Q ss_pred             CCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCC
Q 026414           86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (239)
Q Consensus        86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~  165 (239)
                      ++||+|+...                               .                  .|+|++|+.++...++++|+
T Consensus        81 ~~Gd~V~~~~-------------------------------~------------------~g~~~~~~~v~~~~~~~ip~  111 (334)
T PTZ00354         81 KEGDRVMALL-------------------------------P------------------GGGYAEYAVAHKGHVMHIPQ  111 (334)
T ss_pred             CCCCEEEEec-------------------------------C------------------CCceeeEEEecHHHcEeCCC
Confidence            9999997431                               1                  13899999999999999999


Q ss_pred             CCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ++++.+++.+.+++.+||+++.....++++++|+|+|+ |.+|++++++++++|+ .++++.+++++.+.+.
T Consensus       112 ~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~  182 (334)
T PTZ00354        112 GYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGA-ATIITTSSEEKVDFCK  182 (334)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            99999999999899999998877788999999999987 9999999999999999 6677888888877764

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=99.93  E-value=1.1e-24  Score=189.61  Aligned_cols=170  Identities=22%  Similarity=0.201  Sum_probs=141.9

Q ss_pred             ceeEEEEecC--CC----CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCC
Q 026414            9 TCKAAVAWEP--NK----PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV   82 (239)
Q Consensus         9 ~~~a~~~~~~--~~----~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v   82 (239)
                      +||++++.+.  ++    .+++++.|.|+|++|||||||++++||+.|......   ...+|.++|+|++|+|++   .+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~---~~~~p~v~G~e~~G~V~~---~~   75 (329)
T cd08294           2 KAKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSKR---LNEGDTMIGTQVAKVIES---KN   75 (329)
T ss_pred             CceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhccccc---CCCCCcEecceEEEEEec---CC
Confidence            6899998873  33    389999999999999999999999999887542221   124688999999999995   34


Q ss_pred             CCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc---e
Q 026414           83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV---S  159 (239)
Q Consensus        83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~  159 (239)
                      +.|++||+|...                                                    ++|++|+.++..   .
T Consensus        76 ~~~~~Gd~V~~~----------------------------------------------------~~~~~~~~~~~~~~~~  103 (329)
T cd08294          76 SKFPVGTIVVAS----------------------------------------------------FGWRTHTVSDGKDQPD  103 (329)
T ss_pred             CCCCCCCEEEee----------------------------------------------------CCeeeEEEECCccccc
Confidence            579999999731                                                    168899999999   9


Q ss_pred             eEecCCCCC-----chhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414          160 VAKIDPQAP-----LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (239)
Q Consensus       160 ~~~~p~~~~-----~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~  233 (239)
                      ++++|++++     ...++.+++++.|||+++....++++|++|||+|+ |++|.+++|+|+++|+ +|+++++++++.+
T Consensus       104 ~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~  182 (329)
T cd08294         104 LYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVA  182 (329)
T ss_pred             eEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHH
Confidence            999999987     12334677899999998878889999999999986 9999999999999999 8999999999888


Q ss_pred             hhhh
Q 026414          234 REFW  237 (239)
Q Consensus       234 ~~~~  237 (239)
                      ++++
T Consensus       183 ~l~~  186 (329)
T cd08294         183 WLKE  186 (329)
T ss_pred             HHHH
Confidence            8754

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.93  E-value=6.4e-25  Score=185.01  Aligned_cols=175  Identities=35%  Similarity=0.509  Sum_probs=151.7

Q ss_pred             eEEEEEeEeeechhhhhhhcCCCC-CCCCCeeeeeeEEEEEEEeCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCC
Q 026414           36 EVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCG  114 (239)
Q Consensus        36 eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~  114 (239)
                      ||+|+|+++++|+.|+..+.+..+ ...+|.++|||++|+|+++|++++.|++||+|+..+...|+.|++|..    .|.
T Consensus         1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~----~~~   76 (271)
T cd05188           1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRE----LCP   76 (271)
T ss_pred             CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHh----hCC
Confidence            689999999999999999888754 335678999999999999999999999999999999999999999997    565


Q ss_pred             CcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCchhhhhcccccchhhhhhhhhcCCCC
Q 026414          115 KVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEP  194 (239)
Q Consensus       115 ~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~  194 (239)
                      ....   .+.                   ...|+|++|+.++...++++|+++++++++.+++++.+||+++.....+++
T Consensus        77 ~~~~---~~~-------------------~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~  134 (271)
T cd05188          77 GGGI---LGE-------------------GLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKP  134 (271)
T ss_pred             CCCE---ecc-------------------ccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCC
Confidence            4332   111                   123489999999999999999999999999999999999998877777799


Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++|||+|+|.+|++++++++..|. +|+++++++++.+.+++
T Consensus       135 ~~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~  176 (271)
T cd05188         135 GDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKE  176 (271)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence            9999999996699999999999997 99999999888777653

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.93  E-value=1.6e-24  Score=188.79  Aligned_cols=175  Identities=27%  Similarity=0.271  Sum_probs=152.6

Q ss_pred             ceeEEEEecCCC----CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCC
Q 026414            9 TCKAAVAWEPNK----PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVT   83 (239)
Q Consensus         9 ~~~a~~~~~~~~----~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~   83 (239)
                      .||++++.+++.    ++++++++.|.+.++||+||+.++++|+.|+....+.... ..+|.++|||++|+|+.+|++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~   80 (329)
T cd08250           1 SFRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVT   80 (329)
T ss_pred             CceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCC
Confidence            489999986655    5999999999999999999999999999999988776532 35788999999999999999999


Q ss_pred             CCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEec
Q 026414           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (239)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  163 (239)
                      ++++||+|+...                                                  .|+|++|+.++.+.++++
T Consensus        81 ~~~~Gd~V~~~~--------------------------------------------------~g~~~s~~~v~~~~~~~i  110 (329)
T cd08250          81 DFKVGDAVATMS--------------------------------------------------FGAFAEYQVVPARHAVPV  110 (329)
T ss_pred             CCCCCCEEEEec--------------------------------------------------CcceeEEEEechHHeEEC
Confidence            999999998531                                                  138999999999999999


Q ss_pred             CCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      |++.  .+++.+..++.|||+++.....++++++++|+|+ |.+|++++++++..|+ .++++.+++++.+.++
T Consensus       111 p~~~--~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~-~v~~~~~~~~~~~~~~  181 (329)
T cd08250         111 PELK--PEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGC-HVIGTCSSDEKAEFLK  181 (329)
T ss_pred             CCCc--chhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCC-eEEEEeCcHHHHHHHH
Confidence            9873  4677788899999998877788999999999986 9999999999999999 7888888888777654

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=99.93  E-value=3.2e-24  Score=189.44  Aligned_cols=179  Identities=21%  Similarity=0.284  Sum_probs=144.6

Q ss_pred             CcccceeEEEEecCCC------CeEEEe---ecCCC-CCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeee--eEE
Q 026414            5 GQVITCKAAVAWEPNK------PLVIED---VQVAP-PQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH--EAA   72 (239)
Q Consensus         5 ~~~~~~~a~~~~~~~~------~~~~~~---~~~p~-~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~--e~v   72 (239)
                      .++.+.|.+++-...+      .|++++   ++.|. +++||||||+.++++|+.|...+.+......+|.++|+  |++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~~~~p~~~G~~~~~~   83 (348)
T PLN03154          4 GQVVENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDSYLPPFVPGQRIEGF   83 (348)
T ss_pred             CccccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCCCCCCcCCCCeeEee
Confidence            4556678877743222      288877   46664 48999999999999999988654432222245789998  889


Q ss_pred             EEEEEeCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeee
Q 026414           73 GIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQY  152 (239)
Q Consensus        73 G~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~  152 (239)
                      |+|..+|++++.|++||+|...                                                    ++|++|
T Consensus        84 G~v~~vg~~v~~~~~Gd~V~~~----------------------------------------------------~~~aey  111 (348)
T PLN03154         84 GVSKVVDSDDPNFKPGDLISGI----------------------------------------------------TGWEEY  111 (348)
T ss_pred             EEEEEEecCCCCCCCCCEEEec----------------------------------------------------CCcEEE
Confidence            9999999999999999999621                                                    279999


Q ss_pred             EEEecce--eEe--cCCCCCch-hhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc
Q 026414          153 TVVHDVS--VAK--IDPQAPLD-KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID  226 (239)
Q Consensus       153 ~~~~~~~--~~~--~p~~~~~~-~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~  226 (239)
                      ..++...  +++  +|++++++ +++.+++++.|||+++....++++|++|||+|+ |++|++++|+|+++|+ +|++++
T Consensus       112 ~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~  190 (348)
T PLN03154        112 SLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSA  190 (348)
T ss_pred             EEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEc
Confidence            9888743  544  58999886 688899999999998878889999999999988 9999999999999999 899999


Q ss_pred             CChhhHhhhh
Q 026414          227 IDPKKFDREF  236 (239)
Q Consensus       227 ~~~~~~~~~~  236 (239)
                      ++++|+++++
T Consensus       191 ~~~~k~~~~~  200 (348)
T PLN03154        191 GSSQKVDLLK  200 (348)
T ss_pred             CCHHHHHHHH
Confidence            9998888765

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.93  E-value=2.1e-24  Score=188.50  Aligned_cols=181  Identities=22%  Similarity=0.242  Sum_probs=155.3

Q ss_pred             eeEEEEecCCCC-----eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCC
Q 026414           10 CKAAVAWEPNKP-----LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE   84 (239)
Q Consensus        10 ~~a~~~~~~~~~-----~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~   84 (239)
                      ||++++.+++++     ++.++++.|.+.+++|+||+.++++|++|+..+.+..+....|.++|||++|+|+++|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~   80 (336)
T cd08252           1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPKILGWDASGVVEAVGSEVTL   80 (336)
T ss_pred             CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCCCCCCcccccceEEEEEEcCCCCCC
Confidence            689999988873     666788888899999999999999999999988776543346678999999999999999999


Q ss_pred             CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (239)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p  164 (239)
                      |++||+|......                         +   .+                  |+|++|+.++...++++|
T Consensus        81 ~~~Gd~V~~~~~~-------------------------~---~~------------------g~~~~~~~v~~~~~~~ip  114 (336)
T cd08252          81 FKVGDEVYYAGDI-------------------------T---RP------------------GSNAEYQLVDERIVGHKP  114 (336)
T ss_pred             CCCCCEEEEcCCC-------------------------C---CC------------------ccceEEEEEchHHeeeCC
Confidence            9999999853210                         0   12                  389999999999999999


Q ss_pred             CCCCchhhhhcccccchhhhhhhhhcCCCC-----CCEEEEEcC-CHHHHHHHHHHHHcC-CCeEEEEcCChhhHhhhhh
Q 026414          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEP-----GSIVAVFGL-GTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~-----g~~vlI~G~-g~~g~~ai~~~~~~G-~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++++.++++.+++++.++|.++.+...+.+     +++|+|+|+ |.+|++++++++.+| + +++++++++++.+.+.+
T Consensus       115 ~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~-~v~~~~~~~~~~~~~~~  193 (336)
T cd08252         115 KSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGL-TVIATASRPESIAWVKE  193 (336)
T ss_pred             CCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCc-EEEEEcCChhhHHHHHh
Confidence            999999999999999999998777777777     999999986 999999999999999 7 89999988888777643

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.93  E-value=2.9e-24  Score=185.58  Aligned_cols=181  Identities=28%  Similarity=0.405  Sum_probs=154.1

Q ss_pred             eeEEEEecCCC--CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414           10 CKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (239)
Q Consensus        10 ~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~   87 (239)
                      ||++++...+.  .+++.+.+.|.++++||+||++++++|+.|+....+..+....|.++|||++|+|+++|.  ..+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~--~~~~~   78 (320)
T cd08243           1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLGIEAVGEVEEAPG--GTFTP   78 (320)
T ss_pred             CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCccccceeEEEEEEecC--CCCCC
Confidence            68888877664  377788888889999999999999999999998887654445678999999999999995  57999


Q ss_pred             CCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCC
Q 026414           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (239)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~  167 (239)
                      ||+|+.....                        .|.. .+                  |+|++|+.++...++++|+++
T Consensus        79 Gd~V~~~~~~------------------------~~~~-~~------------------g~~~~~~~~~~~~~~~ip~~~  115 (320)
T cd08243          79 GQRVATAMGG------------------------MGRT-FD------------------GSYAEYTLVPNEQVYAIDSDL  115 (320)
T ss_pred             CCEEEEecCC------------------------CCCC-CC------------------cccceEEEcCHHHcEeCCCCC
Confidence            9999865320                        0000 12                  389999999999999999999


Q ss_pred             CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ++++++.+.+++.+||+++.....+++|++|||+|+ |.+|++++++|+++|+ +|+++.+++++.+.+.
T Consensus       116 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~  184 (320)
T cd08243         116 SWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGA-TVTATTRSPERAALLK  184 (320)
T ss_pred             CHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            999999999999999998877788999999999988 9999999999999999 7999998888877764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=99.93  E-value=2.6e-24  Score=187.78  Aligned_cols=157  Identities=21%  Similarity=0.247  Sum_probs=135.3

Q ss_pred             eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCCEEeecCccCCCC
Q 026414           22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRE  101 (239)
Q Consensus        22 ~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~  101 (239)
                      +++.|.|.|+|++|||||||.++++|+.|..   |.+.....|.++|.|++|+|+++|+   +|++||+|...       
T Consensus        19 l~~~~~~~p~~~~~evlv~v~a~~~n~~~~~---g~~~~~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~-------   85 (325)
T TIGR02825        19 FELKTVELPPLNNGEVLLEALFLSVDPYMRV---AAKRLKEGDTMMGQQVARVVESKNV---ALPKGTIVLAS-------   85 (325)
T ss_pred             eEEEeccCCCCCCCcEEEEEEEEecCHHHhc---ccCcCCCCCcEecceEEEEEEeCCC---CCCCCCEEEEe-------
Confidence            8899999999999999999999999996543   4333334577999999999999874   59999999731       


Q ss_pred             CccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEec----CCCCCchhh-hhcc
Q 026414          102 CKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI----DPQAPLDKV-CLLG  176 (239)
Q Consensus       102 c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----p~~~~~~~a-a~l~  176 (239)
                                                                   ++|++|+.++...+.++    |++++++++ +.++
T Consensus        86 ---------------------------------------------~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~  120 (325)
T TIGR02825        86 ---------------------------------------------PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVG  120 (325)
T ss_pred             ---------------------------------------------cCceeeEEechhheEEccccccCCCCHHHHHHhcc
Confidence                                                         16888999998887777    899999887 6788


Q ss_pred             cccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          177 CGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       177 ~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++.|||+++....++++|++|||+|+ |++|++++|+|+.+|+ +|++++++++|.+.+++
T Consensus       121 ~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~  181 (325)
T TIGR02825       121 MPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK  181 (325)
T ss_pred             cHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence            899999998888899999999999986 9999999999999999 89999999988887754

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.93  E-value=4.3e-24  Score=185.30  Aligned_cols=178  Identities=29%  Similarity=0.371  Sum_probs=152.6

Q ss_pred             eeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC---CCCCeeeeeeEEEEEEEeCCCCCC
Q 026414           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE---GLFPCILGHEAAGIVESVGEGVTE   84 (239)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~---~~~p~~~G~e~vG~Vv~vG~~v~~   84 (239)
                      |||+++++++.+  +++.+.+.|.+.++||+|++.++++|+.|+....|..+.   ..+|.++|||++|+|+++|+++..
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~   80 (324)
T cd08244           1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP   80 (324)
T ss_pred             CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence            689998876543  777788888889999999999999999999888775432   356788999999999999999999


Q ss_pred             CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (239)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p  164 (239)
                      +++||+|+.....                             .+|                  +|++|+.++...++++|
T Consensus        81 ~~~Gd~V~~~~~~-----------------------------~~g------------------~~~~~~~v~~~~~~~lp  113 (324)
T cd08244          81 AWLGRRVVAHTGR-----------------------------AGG------------------GYAELAVADVDSLHPVP  113 (324)
T ss_pred             CCCCCEEEEccCC-----------------------------CCc------------------eeeEEEEEchHHeEeCC
Confidence            9999999854210                             123                  89999999999999999


Q ss_pred             CCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      +++++.+++.+.+.+.|+|. +.....++++++++|+|+ |.+|++++++|+.+|+ +++++++++++.+.++
T Consensus       114 ~~~~~~~a~~~~~~~~ta~~-~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~-~v~~~~~~~~~~~~~~  184 (324)
T cd08244         114 DGLDLEAAVAVVHDGRTALG-LLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGA-TVVGAAGGPAKTALVR  184 (324)
T ss_pred             CCCCHHHHhhhcchHHHHHH-HHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            99999999999999999964 667888999999999986 9999999999999998 8999998888877764

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.93  E-value=1.1e-24  Score=191.28  Aligned_cols=183  Identities=31%  Similarity=0.356  Sum_probs=152.2

Q ss_pred             eeEEEEecCC-CCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414           10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (239)
Q Consensus        10 ~~a~~~~~~~-~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G   88 (239)
                      |||+++++++ ..+++++++.|+|+++||+||++++++|++|+....+.. ....|.++|||++|+|+.+|++++.+++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~-~~~~~~~~g~e~~G~v~~vG~~v~~~~~G   79 (339)
T cd08249           1 QKAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGF-IPSYPAILGCDFAGTVVEVGSGVTRFKVG   79 (339)
T ss_pred             CceEEeccCCCCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeeccc-ccCCCceeeeeeeEEEEEeCCCcCcCCCC
Confidence            7899999884 348999999999999999999999999999988775543 12356789999999999999999999999


Q ss_pred             CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCC
Q 026414           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (239)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~  168 (239)
                      |+|+......|+                      +.. .                  .|+|++|+.++...++++|++++
T Consensus        80 d~V~~~~~~~~~----------------------~~~-~------------------~g~~~~~~~v~~~~~~~ip~~~~  118 (339)
T cd08249          80 DRVAGFVHGGNP----------------------NDP-R------------------NGAFQEYVVADADLTAKIPDNIS  118 (339)
T ss_pred             CEEEEEeccccC----------------------CCC-C------------------CCcccceEEechhheEECCCCCC
Confidence            999876432111                      000 1                  23899999999999999999999


Q ss_pred             chhhhhcccccchhhhhhhhhcCC----------CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          169 LDKVCLLGCGVPTGLGAVWNTAKV----------EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~----------~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      +.+++.+++.+.|+|+++....++          ++++++||+|+ |.+|++++++++++|+ .++++. +++|.+.++
T Consensus       119 ~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~-~v~~~~-~~~~~~~~~  195 (339)
T cd08249         119 FEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITTA-SPKNFDLVK  195 (339)
T ss_pred             HHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCC-eEEEEE-CcccHHHHH
Confidence            999999999999999987655544          78999999998 9999999999999999 777776 457777664

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.93  E-value=3.3e-24  Score=186.48  Aligned_cols=182  Identities=20%  Similarity=0.206  Sum_probs=148.4

Q ss_pred             eeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCC-CCCCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-PEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (239)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~-~~~~~p~~~G~e~vG~Vv~vG~~v~~~~   86 (239)
                      |||+++.+.+++  +.+++.|.|.|+++||+||+.++++|++|.....+.. ....+|.++|||++|+|++.|  +.+|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~   78 (326)
T cd08289           1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFK   78 (326)
T ss_pred             CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCC
Confidence            789999887763  8899999999999999999999999999987664321 122457899999999999954  56799


Q ss_pred             CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (239)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~  166 (239)
                      +||+|+..+..                        .|.. .+|                  +|++|+.++.+.++++|++
T Consensus        79 ~Gd~V~~~~~~------------------------~~~~-~~g------------------~~~~~~~v~~~~~~~~p~~  115 (326)
T cd08289          79 PGDEVIVTSYD------------------------LGVS-HHG------------------GYSEYARVPAEWVVPLPKG  115 (326)
T ss_pred             CCCEEEEcccc------------------------cCCC-CCC------------------cceeEEEEcHHHeEECCCC
Confidence            99999864320                        1111 233                  9999999999999999999


Q ss_pred             CCchhhhhcccccchhhhhhhhh--cC-CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNT--AK-VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~--~~-~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++++++.+++++.||+.++...  .. ...+++|||+|+ |.+|.+++++|+++|+ +|+++++++++.+.+++
T Consensus       116 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~  189 (326)
T cd08289         116 LTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGY-EVVASTGKADAADYLKK  189 (326)
T ss_pred             CCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHH
Confidence            99999999999999998866432  23 335789999988 9999999999999999 89999999988887654

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.92  E-value=4.7e-24  Score=183.72  Aligned_cols=173  Identities=20%  Similarity=0.168  Sum_probs=148.6

Q ss_pred             eeEEEEecCC-CCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414           10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (239)
Q Consensus        10 ~~a~~~~~~~-~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G   88 (239)
                      ||++++.+.+ ..+++++.+.|.++++||+||+.++++|+.|.......    ..|.++|||++|+|+++|+++..|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~----~~~~~~g~e~~G~v~~~G~~v~~~~~G   76 (305)
T cd08270           1 MRALVVDPDAPLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER----PDGAVPGWDAAGVVERAAADGSGPAVG   76 (305)
T ss_pred             CeEEEEccCCCceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC----CCCCcccceeEEEEEEeCCCCCCCCCC
Confidence            5888887643 12777899999999999999999999999999876522    235689999999999999999999999


Q ss_pred             CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCC
Q 026414           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (239)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~  168 (239)
                      |+|+...                               .+                  |+|++|+.++.+.++++|++++
T Consensus        77 d~V~~~~-------------------------------~~------------------g~~~~~~~v~~~~~~~ip~~~~  107 (305)
T cd08270          77 ARVVGLG-------------------------------AM------------------GAWAELVAVPTGWLAVLPDGVS  107 (305)
T ss_pred             CEEEEec-------------------------------CC------------------cceeeEEEEchHHeEECCCCCC
Confidence            9997431                               12                  3899999999999999999999


Q ss_pred             chhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++++.+++.+.|||+++...... +|++++|+|+ |.+|.+++++++..|+ +++++++++++.+.+++
T Consensus       108 ~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~  175 (305)
T cd08270         108 FAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLAALAGA-HVVAVVGSPARAEGLRE  175 (305)
T ss_pred             HHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence            999999999999999987555544 5999999988 9999999999999998 89999999988888754

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.92  E-value=9.8e-24  Score=183.33  Aligned_cols=181  Identities=20%  Similarity=0.218  Sum_probs=149.1

Q ss_pred             eeEEEEecCCC--CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414           10 CKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (239)
Q Consensus        10 ~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~   86 (239)
                      |||+++++++.  .++++++|.|.|+++||+||+.++++|++|.....+.... ..+|.++|||++|+|++  +++++++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~   78 (324)
T cd08288           1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFK   78 (324)
T ss_pred             CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCC
Confidence            78999998775  4999999999999999999999999999999988776421 24577899999999999  6777899


Q ss_pred             CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (239)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~  166 (239)
                      +||+|+.....                        .|.                   ...|+|++|+.++.+.++++|++
T Consensus        79 ~Gd~V~~~~~~------------------------~~~-------------------~~~g~~~~~~~v~~~~~~~lp~~  115 (324)
T cd08288          79 PGDRVVLTGWG------------------------VGE-------------------RHWGGYAQRARVKADWLVPLPEG  115 (324)
T ss_pred             CCCEEEECCcc------------------------CCC-------------------CCCCcceeEEEEchHHeeeCCCC
Confidence            99999864210                        000                   01238999999999999999999


Q ss_pred             CCchhhhhcccccchhhhhhh--hhcCCC-CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVW--NTAKVE-PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~--~~~~~~-~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      +++++++.+.+++.+++.++.  ...... ++++|||+|+ |.+|.+++++|+++|+ ++++++.+++|.+.++
T Consensus       116 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~-~vi~~~~~~~~~~~~~  188 (324)
T cd08288         116 LSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGY-EVVASTGRPEEADYLR  188 (324)
T ss_pred             CCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHH
Confidence            999999999988888876543  123444 6789999998 9999999999999999 7888888888888764

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.92  E-value=1.3e-23  Score=182.70  Aligned_cols=181  Identities=26%  Similarity=0.267  Sum_probs=147.9

Q ss_pred             eEEEEecCCC--CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414           11 KAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQP   87 (239)
Q Consensus        11 ~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~~   87 (239)
                      ||+++...+.  .++++++|.|.++++||+||++++++|++|+....|..+. ..+|.++|||++|+|++  .+++.|++
T Consensus         1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~   78 (323)
T TIGR02823         1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFRE   78 (323)
T ss_pred             CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCC
Confidence            5777776665  4789999999999999999999999999999988886532 24588999999999998  55678999


Q ss_pred             CCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCC
Q 026414           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (239)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~  167 (239)
                      ||+|+.....                        .|.. .+                  |+|++|+.++...++++|+++
T Consensus        79 Gd~V~~~~~~------------------------~~~~-~~------------------g~~~~~~~~~~~~~~~iP~~~  115 (323)
T TIGR02823        79 GDEVIVTGYG------------------------LGVS-HD------------------GGYSQYARVPADWLVPLPEGL  115 (323)
T ss_pred             CCEEEEccCC------------------------CCCC-CC------------------ccceEEEEEchhheEECCCCC
Confidence            9999864320                        1111 12                  389999999999999999999


Q ss_pred             Cchhhhhcccccchhhhhhhh--hcCCCCCC-EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          168 PLDKVCLLGCGVPTGLGAVWN--TAKVEPGS-IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~--~~~~~~g~-~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++++++.+.+.+.+++.++..  ...+.+++ +|||+|+ |.+|.+++++|+++|+ +++++.+++++.+.+++
T Consensus       116 ~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~-~vi~~~~~~~~~~~~~~  188 (323)
T TIGR02823       116 SLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGY-EVVASTGKAEEEDYLKE  188 (323)
T ss_pred             CHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHh
Confidence            999999999888898876533  33478898 9999998 9999999999999999 77877777777776643

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.92  E-value=1.6e-23  Score=182.29  Aligned_cols=175  Identities=25%  Similarity=0.313  Sum_probs=153.3

Q ss_pred             eEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414           11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQP   87 (239)
Q Consensus        11 ~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~~   87 (239)
                      |+++++..+.+  +++++.+.|.|.+++|+|++.++++|++|...+.+.... ..+|.++|||++|+|+.+|+++..|++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~   81 (331)
T cd08273           2 REVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFEV   81 (331)
T ss_pred             eeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCCC
Confidence            78888877653  888999999999999999999999999999988776532 246789999999999999999999999


Q ss_pred             CCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCC
Q 026414           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (239)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~  167 (239)
                      ||+|.....                               +                  |+|++|+.++.+.++++|+++
T Consensus        82 Gd~V~~~~~-------------------------------~------------------g~~~~~~~~~~~~~~~~p~~~  112 (331)
T cd08273          82 GDRVAALTR-------------------------------V------------------GGNAEYINLDAKYLVPVPEGV  112 (331)
T ss_pred             CCEEEEeCC-------------------------------C------------------cceeeEEEechHHeEECCCCC
Confidence            999985321                               1                  289999999999999999999


Q ss_pred             CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ++.+++.+.+++.++|+++.....++++++|+|+|+ |.+|++++++++.+|+ +|+++.+ +++.+.++
T Consensus       113 ~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~v~~~~~-~~~~~~~~  180 (331)
T cd08273         113 DAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGA-EVYGTAS-ERNHAALR  180 (331)
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeC-HHHHHHHH
Confidence            999999999999999998877788999999999987 9999999999999998 8888887 77776654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.91  E-value=2.6e-23  Score=179.23  Aligned_cols=182  Identities=29%  Similarity=0.394  Sum_probs=156.2

Q ss_pred             eeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC-CCCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTEVQ   86 (239)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~vG~Vv~vG~~v~~~~   86 (239)
                      ||++++..++.+  +++.++|.|.+.+++|+|+++++++|++|+....+... ...+|.++|||++|+|+++|+++.+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~   80 (325)
T cd08253           1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLK   80 (325)
T ss_pred             CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCC
Confidence            578888766543  88899999999999999999999999999988877543 235788999999999999999999999


Q ss_pred             CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (239)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~  166 (239)
                      +||+|+....                          |....                  .|++++|+.++.+.++++|++
T Consensus        81 ~Gd~v~~~~~--------------------------~~~~~------------------~g~~~~~~~~~~~~~~~ip~~  116 (325)
T cd08253          81 VGDRVWLTNL--------------------------GWGRR------------------QGTAAEYVVVPADQLVPLPDG  116 (325)
T ss_pred             CCCEEEEecc--------------------------ccCCC------------------CcceeeEEEecHHHcEeCCCC
Confidence            9999986532                          00001                  238999999999999999999


Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      +++.+++.+.+++.++|+++.....+.+|++++|+|+ +.+|++++++++.+|+ .++++++++++.+.+.
T Consensus       117 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~  186 (325)
T cd08253         117 VSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVR  186 (325)
T ss_pred             CCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            9999999999999999998877788999999999987 9999999999999998 8999998888877764

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.91  E-value=2.8e-23  Score=183.02  Aligned_cols=180  Identities=23%  Similarity=0.267  Sum_probs=146.4

Q ss_pred             eEEEEecCCCCeEEEeecCCCC---CCCeEEEEEeEeeechhhhhhhcCCCCCC-CCCeeeeeeEEEEEEEeCCCCC-CC
Q 026414           11 KAAVAWEPNKPLVIEDVQVAPP---QAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVGEGVT-EV   85 (239)
Q Consensus        11 ~a~~~~~~~~~~~~~~~~~p~~---~~~eVlVkv~~~~i~~~D~~~~~g~~~~~-~~p~~~G~e~vG~Vv~vG~~v~-~~   85 (239)
                      |++++++.+.++++++++.|.|   ++++|+||+.++++|++|+..+.+..... ..|.++|+|++|+|+++|++++ .|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~   81 (352)
T cd08247           2 KALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASEW   81 (352)
T ss_pred             ceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccCC
Confidence            6889999988888888888776   89999999999999999998775432211 2377899999999999999998 89


Q ss_pred             CCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc----eeE
Q 026414           86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV----SVA  161 (239)
Q Consensus        86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~  161 (239)
                      ++||+|+......|+                          .                  .|+|++|+.++..    .++
T Consensus        82 ~~Gd~V~~~~~~~~~--------------------------~------------------~g~~~~~~~v~~~~~~~~~~  117 (352)
T cd08247          82 KVGDEVCGIYPHPYG--------------------------G------------------QGTLSQYLLVDPKKDKKSIT  117 (352)
T ss_pred             CCCCEEEEeecCCCC--------------------------C------------------CceeeEEEEEccccccceeE
Confidence            999999865321110                          1                  2389999999987    789


Q ss_pred             ecCCCCCchhhhhcccccchhhhhhhhhc-CCCCCCEEEEEcC-CHHHHHHHHHHHHcCC-CeEEEEcCChhhHhhh
Q 026414          162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTA-KVEPGSIVAVFGL-GTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRE  235 (239)
Q Consensus       162 ~~p~~~~~~~aa~l~~~~~ta~~~~~~~~-~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~-~~vv~~~~~~~~~~~~  235 (239)
                      ++|+++++.+++.+++++.|+|+++.... .+++|+++||+|+ +.+|.+++++|+++|. +.++++.+ +++.+.+
T Consensus       118 ~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~~-~~~~~~~  193 (352)
T cd08247         118 RKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTCS-SRSAELN  193 (352)
T ss_pred             ECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEeC-hhHHHHH
Confidence            99999999999999999999999886666 7999999999988 8999999999999854 35666654 4444444

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.91  E-value=3e-23  Score=178.49  Aligned_cols=177  Identities=29%  Similarity=0.350  Sum_probs=153.6

Q ss_pred             eeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (239)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~   86 (239)
                      ||++++.+.+.+  +++.+.+.|.+.+++|+||++++++|+.|+....+..+. ..+|.++|||++|+|+++|+++..++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~   80 (323)
T cd05276           1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWK   80 (323)
T ss_pred             CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCC
Confidence            789999875543  778888888889999999999999999999888775432 24578999999999999999999999


Q ss_pred             CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (239)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~  166 (239)
                      +||+|+....                               +                  |+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~-------------------------------~------------------g~~~~~~~~~~~~~~~~p~~  111 (323)
T cd05276          81 VGDRVCALLA-------------------------------G------------------GGYAEYVVVPAGQLLPVPEG  111 (323)
T ss_pred             CCCEEEEecC-------------------------------C------------------CceeEEEEcCHHHhccCCCC
Confidence            9999974311                               1                  28999999999999999999


Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      +++.+++.+..++.++|+++.....+.++++++|+|+ |.+|++++++++..|+ .++++++++++.+.+.
T Consensus       112 ~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~-~v~~~~~~~~~~~~~~  181 (323)
T cd05276         112 LSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGA-RVIATAGSEEKLEACR  181 (323)
T ss_pred             CCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHH
Confidence            9999999999899999998877788999999999987 9999999999999999 7999998888777664

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.91  E-value=4.3e-23  Score=178.64  Aligned_cols=178  Identities=29%  Similarity=0.397  Sum_probs=153.3

Q ss_pred             eeEEEEecCC--CCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414           10 CKAAVAWEPN--KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (239)
Q Consensus        10 ~~a~~~~~~~--~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~   87 (239)
                      |||+++.+++  +.++++++|.|++++++|+||++++++|++|+....+......+|.++|||++|+|+.+|++++.+++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~   80 (325)
T cd08271           1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVPGVDGAGVVVAVGAKVTGWKV   80 (325)
T ss_pred             CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCcccccceEEEEEEeCCCCCcCCC
Confidence            7999999988  35999999999999999999999999999999888776543344678999999999999999999999


Q ss_pred             CCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCC
Q 026414           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (239)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~  167 (239)
                      ||+|......                           . .+                  ++|++|+.++...++++|+++
T Consensus        81 Gd~V~~~~~~---------------------------~-~~------------------~~~~s~~~~~~~~~~~ip~~~  114 (325)
T cd08271          81 GDRVAYHASL---------------------------A-RG------------------GSFAEYTVVDARAVLPLPDSL  114 (325)
T ss_pred             CCEEEeccCC---------------------------C-CC------------------ccceeEEEeCHHHeEECCCCC
Confidence            9999864320                           0 12                  389999999999999999999


Q ss_pred             CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      +..+++.+.+.+.++++++.....+++|++++|+|+ |.+|+++++++++.|+ .++++. ++++.+.+
T Consensus       115 ~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~-~v~~~~-~~~~~~~~  181 (325)
T cd08271         115 SFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGL-RVITTC-SKRNFEYV  181 (325)
T ss_pred             CHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEE-cHHHHHHH
Confidence            999999999999999998878888999999999998 8999999999999998 677665 55555554

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.91  E-value=7.1e-23  Score=176.96  Aligned_cols=181  Identities=29%  Similarity=0.361  Sum_probs=153.8

Q ss_pred             eeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (239)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~   86 (239)
                      |||+++.+++.+  +++++.+.|.+.+++|+|++.++++|++|.....+.... ...|.++|||++|+|+++|+++..|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (326)
T cd08272           1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFR   80 (326)
T ss_pred             CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Confidence            689999888765  888888888899999999999999999999887765431 23577899999999999999999999


Q ss_pred             CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (239)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~  166 (239)
                      +||+|.....                          |....                  .|+|++|+.++...++++|++
T Consensus        81 ~Gd~V~~~~~--------------------------~~~~~------------------~g~~~~~~~v~~~~~~~~p~~  116 (326)
T cd08272          81 VGDEVYGCAG--------------------------GLGGL------------------QGSLAEYAVVDARLLALKPAN  116 (326)
T ss_pred             CCCEEEEccC--------------------------CcCCC------------------CCceeEEEEecHHHcccCCCC
Confidence            9999985421                          00001                  238999999999999999999


Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      +++.+++.+++.+.++|+++.....++++++++|+|+ |.+|++++++++.+|+ .++++++. ++.+.+.
T Consensus       117 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~-~~~~~~~  185 (326)
T cd08272         117 LSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGA-RVYATASS-EKAAFAR  185 (326)
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEech-HHHHHHH
Confidence            9999999998899999998878889999999999986 9999999999999999 78888877 7766654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.90  E-value=1.2e-22  Score=175.28  Aligned_cols=166  Identities=27%  Similarity=0.379  Sum_probs=138.5

Q ss_pred             cCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhh-cCCCCC--CCCCeeeeeeEEEEEEEeCCCCCCCCCCCEEee
Q 026414           17 EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTW-SGKDPE--GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIP   93 (239)
Q Consensus        17 ~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~-~g~~~~--~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~   93 (239)
                      +++. +++++++.|++.++||+||+.++++|+.|+..+ .+....  ..+|.++|+|++|+|+++|++++++++||+|+.
T Consensus         3 ~~~~-~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~   81 (312)
T cd08269           3 GPGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAG   81 (312)
T ss_pred             CCCe-eEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEE
Confidence            4444 999999999999999999999999999999887 665321  124778999999999999999999999999985


Q ss_pred             cCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCchhhh
Q 026414           94 CYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVC  173 (239)
Q Consensus        94 ~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa  173 (239)
                      ..                                                  .|+|++|+.++.+.++++|+++  ..++
T Consensus        82 ~~--------------------------------------------------~g~~~~~~~v~~~~~~~lP~~~--~~~~  109 (312)
T cd08269          82 LS--------------------------------------------------GGAFAEYDLADADHAVPLPSLL--DGQA  109 (312)
T ss_pred             ec--------------------------------------------------CCcceeeEEEchhheEECCCch--hhhH
Confidence            32                                                  1389999999999999999988  2232


Q ss_pred             hcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          174 LLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       174 ~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ....++.++++++. ..++++++++||+|+|.+|.+++++|+.+|++.++++.+++++.+++.
T Consensus       110 ~~~~~~~~a~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~  171 (312)
T cd08269         110 FPGEPLGCALNVFR-RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALAR  171 (312)
T ss_pred             HhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence            22257778888664 888999999999988999999999999999944999998888877654

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.90  E-value=1.2e-22  Score=176.08  Aligned_cols=166  Identities=23%  Similarity=0.324  Sum_probs=146.2

Q ss_pred             eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCCCCCEEeecCccCCC
Q 026414           22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECR  100 (239)
Q Consensus        22 ~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~  100 (239)
                      +++++.|.|.+++++|+||++++++|+.|...+.+.... ..+|.++|||++|+|+++|++++++++||+|+..+.    
T Consensus        14 ~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~----   89 (323)
T cd05282          14 LELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGG----   89 (323)
T ss_pred             EEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeCC----
Confidence            778888999999999999999999999999888765432 246789999999999999999999999999985421    


Q ss_pred             CCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCchhhhhcccccc
Q 026414          101 ECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP  180 (239)
Q Consensus       101 ~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~  180 (239)
                                                 +                  |+|++|+.++...++++|+++++.+++.+.+...
T Consensus        90 ---------------------------~------------------g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~  124 (323)
T cd05282          90 ---------------------------E------------------GTWQEYVVAPADDLIPVPDSISDEQAAMLYINPL  124 (323)
T ss_pred             ---------------------------C------------------CcceeEEecCHHHeEECCCCCCHHHHHHHhccHH
Confidence                                       1                  2899999999999999999999999999988999


Q ss_pred             hhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          181 TGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       181 ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++|+++.....+.++++|||+|+ |.+|++++++|+++|+ .++++.+++++.+.+++
T Consensus       125 ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~  181 (323)
T cd05282         125 TAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGF-KTINVVRRDEQVEELKA  181 (323)
T ss_pred             HHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecChHHHHHHHh
Confidence            99998877788899999999988 9999999999999999 78888888888777653

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.90  E-value=3.4e-22  Score=171.70  Aligned_cols=176  Identities=33%  Similarity=0.392  Sum_probs=151.3

Q ss_pred             eEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414           11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (239)
Q Consensus        11 ~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G   88 (239)
                      ||+.+..++.+  +.+.+.+.+.++++||+|+|.++++|+.|+....+..+. .+|.++|||++|+|+.+|++++++++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~-~~~~~~g~e~~G~v~~~g~~~~~~~~G   79 (320)
T cd05286           1 KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL-PLPFVLGVEGAGVVEAVGPGVTGFKVG   79 (320)
T ss_pred             CeEEEecCCCccceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC-CCCccCCcceeEEEEEECCCCCCCCCC
Confidence            46666655543  677788887789999999999999999999988776543 457789999999999999999999999


Q ss_pred             CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCC
Q 026414           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (239)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~  168 (239)
                      |+|....                               .                  .|+|++|+.++.+.++++|++++
T Consensus        80 ~~V~~~~-------------------------------~------------------~g~~~~~~~~~~~~~~~~p~~~~  110 (320)
T cd05286          80 DRVAYAG-------------------------------P------------------PGAYAEYRVVPASRLVKLPDGIS  110 (320)
T ss_pred             CEEEEec-------------------------------C------------------CCceeEEEEecHHHceeCCCCCC
Confidence            9998531                               0                  12899999999999999999999


Q ss_pred             chhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ..+++.+.+...+++.++....++++|++|||+|+ |.+|++++++++.+|+ .++++++++++.+.+++
T Consensus       111 ~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~  179 (320)
T cd05286         111 DETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAELARA  179 (320)
T ss_pred             HHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH
Confidence            99999988899999998877888999999999996 9999999999999999 89999988888877643

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.89  E-value=5.9e-22  Score=171.17  Aligned_cols=182  Identities=33%  Similarity=0.381  Sum_probs=153.5

Q ss_pred             eeEEEEecCCC--CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414           10 CKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (239)
Q Consensus        10 ~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~   86 (239)
                      ||++++...+.  .+++.+.+.|.+++++++|++.++++|+.|+....+.... ..+|.++|||++|+|+.+|+++++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (328)
T cd08268           1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFA   80 (328)
T ss_pred             CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCC
Confidence            67888876554  3777888888899999999999999999999887665432 24467899999999999999999999


Q ss_pred             CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (239)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~  166 (239)
                      +||+|+..+...+                         . .+                  |++++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~-------------------------~-~~------------------g~~~~~~~~~~~~~~~~p~~  116 (328)
T cd08268          81 VGDRVSVIPAADL-------------------------G-QY------------------GTYAEYALVPAAAVVKLPDG  116 (328)
T ss_pred             CCCEEEecccccc-------------------------C-CC------------------ccceEEEEechHhcEeCCCC
Confidence            9999986532100                         0 12                  38999999999999999999


Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      +++.+++.+.+++.++|.++.....+.++++++|+|+ |.+|++++++++..|+ .++++++++++.+.+.
T Consensus       117 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~-~v~~~~~~~~~~~~~~  186 (328)
T cd08268         117 LSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGA-TVIATTRTSEKRDALL  186 (328)
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHH
Confidence            9999999999999999998877888999999999988 9999999999999998 8888888887776653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.89  E-value=3.4e-23  Score=153.34  Aligned_cols=108  Identities=37%  Similarity=0.689  Sum_probs=93.3

Q ss_pred             CCeEEEEEeEeeechhhhhhhcCC-CCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCCEEeecCccCCCCCccccCCCCCC
Q 026414           34 AGEVRIKILFTALCHTDAYTWSGK-DPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNL  112 (239)
Q Consensus        34 ~~eVlVkv~~~~i~~~D~~~~~g~-~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~  112 (239)
                      |+||||||++++||++|++++.+. .....+|.++|||++|+|+++|+++++|++||+|++.+...|+.|.+|..+..+.
T Consensus         1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~   80 (109)
T PF08240_consen    1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNL   80 (109)
T ss_dssp             TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGG
T ss_pred             CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcccc
Confidence            689999999999999999999983 4555899999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEec
Q 026414          113 CGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (239)
Q Consensus       113 c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  163 (239)
                      |.+...   .|.. .+|                  +|+||+.+|.++++++
T Consensus        81 c~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~v  109 (109)
T PF08240_consen   81 CPNPEV---LGLG-LDG------------------GFAEYVVVPARNLVPV  109 (109)
T ss_dssp             TTTBEE---TTTS-STC------------------SSBSEEEEEGGGEEEE
T ss_pred             CCCCCE---eEcC-CCC------------------cccCeEEEehHHEEEC
Confidence            976554   3333 445                  9999999999999875

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.89  E-value=5.1e-22  Score=170.21  Aligned_cols=179  Identities=28%  Similarity=0.345  Sum_probs=150.3

Q ss_pred             eeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC---CCCCCeeeeeeEEEEEEEeCCCCCC
Q 026414           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTE   84 (239)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~vG~Vv~vG~~v~~   84 (239)
                      ||++++..++..  +++++.+.|.++++||+||+.++++|+.|+..+.+...   ...+|.++|||++|+|+.+|+++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~   80 (309)
T cd05289           1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG   80 (309)
T ss_pred             CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence            678888876653  56778888889999999999999999999988877542   2345789999999999999999999


Q ss_pred             CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (239)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p  164 (239)
                      +++||+|...+..                         +   .+                  |+|++|+.++...++++|
T Consensus        81 ~~~G~~V~~~~~~-------------------------~---~~------------------g~~~~~~~~~~~~~~~~p  114 (309)
T cd05289          81 FKVGDEVFGMTPF-------------------------T---RG------------------GAYAEYVVVPADELALKP  114 (309)
T ss_pred             CCCCCEEEEccCC-------------------------C---CC------------------CcceeEEEecHHHhccCC
Confidence            9999999865320                         0   12                  389999999999999999


Q ss_pred             CCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      +++++..++.+.+.+.+++.++.....+.++++++|+|+ |.+|++++++++..|+ .++++.+++ +.+.+.
T Consensus       115 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~-~~~~~~  185 (309)
T cd05289         115 ANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGA-RVIATASAA-NADFLR  185 (309)
T ss_pred             CCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEecch-hHHHHH
Confidence            999999999988889999998877677899999999997 9999999999999999 788777666 666553

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.89  E-value=1.1e-21  Score=169.36  Aligned_cols=177  Identities=29%  Similarity=0.336  Sum_probs=151.9

Q ss_pred             eeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (239)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~   86 (239)
                      ||++.+..++.+  +++.+.+.|.+++++++|++.++++|+.|+....+.+.. ..+|.++|||++|+|+.+|+++.+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~   80 (325)
T TIGR02824         1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWK   80 (325)
T ss_pred             CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCC
Confidence            678888776554  777788777789999999999999999999888765432 23577999999999999999999999


Q ss_pred             CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (239)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~  166 (239)
                      +||+|+...                               .+                  |+|++|+.++...++++|++
T Consensus        81 ~Gd~V~~~~-------------------------------~~------------------~~~~~~~~~~~~~~~~ip~~  111 (325)
T TIGR02824        81 VGDRVCALV-------------------------------AG------------------GGYAEYVAVPAGQVLPVPEG  111 (325)
T ss_pred             CCCEEEEcc-------------------------------CC------------------CcceeEEEecHHHcEeCCCC
Confidence            999997531                               11                  28999999999999999999


Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      +++.+++.+.++..++|.++.....++++++++|+|+ |.+|.+++++++.+|+ +++++.+++++.+.+.
T Consensus       112 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~  181 (325)
T TIGR02824       112 LSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGA-RVFTTAGSDEKCAACE  181 (325)
T ss_pred             CCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            9999999999999999998778889999999999987 9999999999999998 8888888888776653

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.88  E-value=1.8e-21  Score=168.03  Aligned_cols=166  Identities=28%  Similarity=0.376  Sum_probs=142.0

Q ss_pred             EEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC---CCCCCeeeeeeEEEEEEEeCCCCCCCCCCCEEeecCccCC
Q 026414           23 VIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAEC   99 (239)
Q Consensus        23 ~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~   99 (239)
                      ++++.+.|.++++||+|+++++++|++|...+.+...   ....|.++|||++|+|.++|+++.++++||+|+...... 
T Consensus        15 ~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~-   93 (319)
T cd08267          15 LEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPPK-   93 (319)
T ss_pred             ccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccCC-
Confidence            7889999999999999999999999999998877542   123467899999999999999999999999998643210 


Q ss_pred             CCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCchhhhhccccc
Q 026414          100 RECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV  179 (239)
Q Consensus       100 ~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~  179 (239)
                                                 .                  .|+|++|+.++.+.++++|++++..+++.+.+++
T Consensus        94 ---------------------------~------------------~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~  128 (319)
T cd08267          94 ---------------------------G------------------GGALAEYVVAPESGLAKKPEGVSFEEAAALPVAG  128 (319)
T ss_pred             ---------------------------C------------------CceeeEEEEechhheEECCCCCCHHHHHhhhhHH
Confidence                                       1                  1389999999999999999999999999999999


Q ss_pred             chhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          180 PTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       180 ~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      .++|+++.....++++++|+|+|+ |.+|++++++++.+|+ ++++++++ ++.+.++
T Consensus       129 ~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~-~v~~~~~~-~~~~~~~  184 (319)
T cd08267         129 LTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGA-HVTGVCST-RNAELVR  184 (319)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCH-HHHHHHH
Confidence            999998877777999999999998 9999999999999999 78887765 6655553

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08251 polyketide_synthase polyketide synthase

Probab=99.88  E-value=2.3e-21  Score=165.84  Aligned_cols=159  Identities=26%  Similarity=0.354  Sum_probs=138.7

Q ss_pred             CCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCCCCCEEeecCccCCCCCccccC
Q 026414           29 VAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKS  107 (239)
Q Consensus        29 ~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~  107 (239)
                      .|.+.+++|+||+.++++|+.|+..+.+.+.. ..+|.++|+|++|+|+++|+++.+|++||+|+.....          
T Consensus         2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~----------   71 (303)
T cd08251           2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGE----------   71 (303)
T ss_pred             CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCC----------
Confidence            57789999999999999999999988876432 2567899999999999999999999999999864220          


Q ss_pred             CCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCchhhhhcccccchhhhhhh
Q 026414          108 GKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW  187 (239)
Q Consensus       108 ~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~  187 (239)
                                         .+                  |+|++|+.++.+.++++|+++++.+++.++.++.++|.++ 
T Consensus        72 -------------------~~------------------g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l-  113 (303)
T cd08251          72 -------------------SM------------------GGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF-  113 (303)
T ss_pred             -------------------CC------------------cceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-
Confidence                               12                  3899999999999999999999999999998999999976 


Q ss_pred             hhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          188 NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       188 ~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ....+++|++++|+|+ |.+|++++++++++|+ +++++++++++.+.++
T Consensus       114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~  162 (303)
T cd08251         114 ARAGLAKGEHILIQTATGGTGLMAVQLARLKGA-EIYATASSDDKLEYLK  162 (303)
T ss_pred             HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHH
Confidence            6788999999999966 9999999999999999 8999988887777664

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.87  E-value=6.1e-21  Score=166.12  Aligned_cols=172  Identities=23%  Similarity=0.223  Sum_probs=140.2

Q ss_pred             eEEEEecCC------CCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC---CCCCCeeeeeeEEEEEEEeCCC
Q 026414           11 KAAVAWEPN------KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEG   81 (239)
Q Consensus        11 ~a~~~~~~~------~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~vG~Vv~vG~~   81 (239)
                      ||+++.+.+      +.++++++|.|++.+++|+||+.++++|+.|.....+...   +...+.++|+|++|+|+++|.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~   82 (329)
T cd05288           3 RQVVLAKRPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRSP   82 (329)
T ss_pred             cEEEEeccCCCCCCccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCCC
Confidence            566665333      2399999999999999999999999999988765544321   1123457899999999999964


Q ss_pred             CCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEec-cee
Q 026414           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD-VSV  160 (239)
Q Consensus        82 v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~  160 (239)
                        ++++||+|...                                                    ++|++|+.++. ..+
T Consensus        83 --~~~~Gd~V~~~----------------------------------------------------~~~~~~~~v~~~~~~  108 (329)
T cd05288          83 --DFKVGDLVSGF----------------------------------------------------LGWQEYAVVDGASGL  108 (329)
T ss_pred             --CCCCCCEEecc----------------------------------------------------cceEEEEEecchhhc
Confidence              79999999731                                                    17999999999 999


Q ss_pred             EecCCCCC--chhhhh-cccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          161 AKIDPQAP--LDKVCL-LGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       161 ~~~p~~~~--~~~aa~-l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      +++|++++  +.+++. +.+++.|+|+++.....+.++++|||+|+ |.+|++++++++.+|+ +++++++++++.+.++
T Consensus       109 ~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~-~vi~~~~~~~~~~~~~  187 (329)
T cd05288         109 RKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGIAGSDEKCRWLV  187 (329)
T ss_pred             EECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            99999985  445555 88899999998877788899999999986 9999999999999999 8999998888877765


Q ss_pred             h
Q 026414          237 W  237 (239)
Q Consensus       237 ~  237 (239)
                      +
T Consensus       188 ~  188 (329)
T cd05288         188 E  188 (329)
T ss_pred             h
Confidence            4

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.87  E-value=3.7e-21  Score=169.05  Aligned_cols=166  Identities=30%  Similarity=0.397  Sum_probs=134.0

Q ss_pred             eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCC----CCCeeeeeeEEEEEEEeCCC----CCCCCCCCEEee
Q 026414           22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG----LFPCILGHEAAGIVESVGEG----VTEVQPGDHVIP   93 (239)
Q Consensus        22 ~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~----~~p~~~G~e~vG~Vv~vG~~----v~~~~~Gd~V~~   93 (239)
                      ...++.++|.|++++++|++.++++|+.|+.++.+.+...    .+|.+++.++.|.+...+..    +..+..||.+..
T Consensus        20 ~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~~   99 (347)
T KOG1198|consen   20 LFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVVA   99 (347)
T ss_pred             EEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccceEeeeEEee
Confidence            5568899999999999999999999999999999987544    36755666555554333322    223444544432


Q ss_pred             cCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCchhhh
Q 026414           94 CYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVC  173 (239)
Q Consensus        94 ~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa  173 (239)
                                                                       +...|+|+||+++|...++++|+++++.++|
T Consensus       100 -------------------------------------------------~~~~g~~aey~v~p~~~~~~~P~~l~~~~aa  130 (347)
T KOG1198|consen  100 -------------------------------------------------FLSSGGLAEYVVVPEKLLVKIPESLSFEEAA  130 (347)
T ss_pred             -------------------------------------------------ccCCCceeeEEEcchhhccCCCCccChhhhh
Confidence                                                             2223499999999999999999999999999


Q ss_pred             hcccccchhhhhhhhhc------CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          174 LLGCGVPTGLGAVWNTA------KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       174 ~l~~~~~ta~~~~~~~~------~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      .++.++.|||.+++...      +.++|++|||+|+ |++|++++|+|++.|+ ..+++..++++++++++
T Consensus       131 ~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~-~~v~t~~s~e~~~l~k~  200 (347)
T KOG1198|consen  131 ALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGA-IKVVTACSKEKLELVKK  200 (347)
T ss_pred             cCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCC-cEEEEEcccchHHHHHH
Confidence            99999999999999999      8999999999976 9999999999999996 66666667888887764

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.87  E-value=1.3e-20  Score=162.24  Aligned_cols=176  Identities=34%  Similarity=0.454  Sum_probs=148.6

Q ss_pred             eeEEEEecCCC--CeEEEeecCCCCC-CCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCC
Q 026414           10 CKAAVAWEPNK--PLVIEDVQVAPPQ-AGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEV   85 (239)
Q Consensus        10 ~~a~~~~~~~~--~~~~~~~~~p~~~-~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~   85 (239)
                      |||+++..++.  .+++.+.+ |.+. +++++|++.++++|++|+....+.... ...|.++|||++|+|+.+|+++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~   79 (323)
T cd08241           1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGF   79 (323)
T ss_pred             CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCC
Confidence            67888874443  27777887 7666 599999999999999999888776432 2346689999999999999999999


Q ss_pred             CCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCC
Q 026414           86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (239)
Q Consensus        86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~  165 (239)
                      ++||+|+....                               +                  |++++|+.++.+.++++|+
T Consensus        80 ~~G~~V~~~~~-------------------------------~------------------~~~~~~~~~~~~~~~~ip~  110 (323)
T cd08241          80 KVGDRVVALTG-------------------------------Q------------------GGFAEEVVVPAAAVFPLPD  110 (323)
T ss_pred             CCCCEEEEecC-------------------------------C------------------ceeEEEEEcCHHHceeCCC
Confidence            99999985420                               1                  2899999999999999999


Q ss_pred             CCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      +++..+++.+..+..+|+.++.....++++++++|+|+ |.+|++++++++..|+ .++++++++++.+.+.
T Consensus       111 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~  181 (323)
T cd08241         111 GLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALAR  181 (323)
T ss_pred             CCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCC-EEEEEeCCHHHHHHHH
Confidence            99988888888899999988776788999999999998 9999999999999999 7899988888877664

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.85  E-value=5.7e-20  Score=159.82  Aligned_cols=158  Identities=26%  Similarity=0.351  Sum_probs=136.3

Q ss_pred             eEEEEecCCC--CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414           11 KAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQP   87 (239)
Q Consensus        11 ~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~~   87 (239)
                      |++++...+.  .+.+.+.+.|.+.+++|+||+.++++|+.|...+.+.... ...|.++|||++|+|+.+|+.+.++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~   80 (337)
T cd08275           1 RAVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKV   80 (337)
T ss_pred             CeEEEcCCCCccceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCC
Confidence            4556655443  3788888888899999999999999999999988776432 245778999999999999999999999


Q ss_pred             CCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCC
Q 026414           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (239)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~  167 (239)
                      ||+|+....                               +                  |+|++|+.++.+.++++|+++
T Consensus        81 G~~V~~~~~-------------------------------~------------------~~~~~~~~~~~~~~~~ip~~~  111 (337)
T cd08275          81 GDRVMGLTR-------------------------------F------------------GGYAEVVNVPADQVFPLPDGM  111 (337)
T ss_pred             CCEEEEecC-------------------------------C------------------CeeeeEEEecHHHeEECCCCC
Confidence            999985321                               1                  289999999999999999999


Q ss_pred             CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHc
Q 026414          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAA  217 (239)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~  217 (239)
                      ++.+++.+.+++.++|+++.....++++++|+|+|+ |.+|++++++++.+
T Consensus       112 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~  162 (337)
T cd08275         112 SFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTV  162 (337)
T ss_pred             CHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHc
Confidence            999999998899999998878888999999999998 99999999999999

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.85  E-value=1.9e-20  Score=158.47  Aligned_cols=150  Identities=27%  Similarity=0.268  Sum_probs=132.7

Q ss_pred             CeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCC
Q 026414           35 GEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCG  114 (239)
Q Consensus        35 ~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~  114 (239)
                      +||+||+.++++|++|+....+..+  .+|.++|||++|+|+++|+++..+++||+|....                   
T Consensus         1 ~~v~i~v~~~~~~~~d~~~~~g~~~--~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~-------------------   59 (293)
T cd05195           1 DEVEVEVKAAGLNFRDVLVALGLLP--GDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA-------------------   59 (293)
T ss_pred             CceEEEEEEEecCHHHHHHHhCCCC--CCCCccceeeeEEEEeecCCccCCCCCCEEEEEe-------------------
Confidence            5899999999999999998877642  4578999999999999999999999999997531                   


Q ss_pred             CcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCchhhhhcccccchhhhhhhhhcCCCC
Q 026414          115 KVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEP  194 (239)
Q Consensus       115 ~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~  194 (239)
                                                     .|+|++|+.++...++++|+++++.+++.+.++..+++.++.....+++
T Consensus        60 -------------------------------~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  108 (293)
T cd05195          60 -------------------------------PGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQK  108 (293)
T ss_pred             -------------------------------cCcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCC
Confidence                                           1289999999999999999999999999998899999998877788999


Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       195 g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      |++++|+|+ |.+|++++++++.+|+ +++++.+++++.+.+++
T Consensus       109 g~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~  151 (293)
T cd05195         109 GESVLIHAAAGGVGQAAIQLAQHLGA-EVFATVGSEEKREFLRE  151 (293)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence            999999975 9999999999999999 88888888877776643

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.83  E-value=1.4e-19  Score=152.19  Aligned_cols=163  Identities=25%  Similarity=0.307  Sum_probs=132.0

Q ss_pred             CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeC--CCCCCCCCCCEEeecCccC
Q 026414           21 PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVG--EGVTEVQPGDHVIPCYQAE   98 (239)
Q Consensus        21 ~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG--~~v~~~~~Gd~V~~~~~~~   98 (239)
                      +|+++|.++|+|+++|||||+++.++++.... +....+..-.|.-+|-..+|.++...  +....|++||.|+..    
T Consensus        26 ~F~lee~~vp~p~~GqvLl~~~ylS~DPymRg-rm~d~~SY~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~----  100 (340)
T COG2130          26 DFRLEEVDVPEPGEGQVLLRTLYLSLDPYMRG-RMSDAPSYAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGV----  100 (340)
T ss_pred             CceeEeccCCCCCcCceEEEEEEeccCHHHee-cccCCcccCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEec----
Confidence            39999999999999999999999999884433 22222333456667776666555543  445679999999732    


Q ss_pred             CCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCc--hhhhhcc
Q 026414           99 CRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL--DKVCLLG  176 (239)
Q Consensus        99 ~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~--~~aa~l~  176 (239)
                                                .                      +|++|...+.+.+.+++++.-+  .....+.
T Consensus       101 --------------------------~----------------------GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLG  132 (340)
T COG2130         101 --------------------------S----------------------GWQEYAISDGEGLRKLDPSPAPLSAYLGVLG  132 (340)
T ss_pred             --------------------------c----------------------cceEEEeechhhceecCCCCCCcchHHhhcC
Confidence                                      1                      7999999999999999865322  2333467


Q ss_pred             cccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          177 CGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       177 ~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      .+..|||.++++..++|+|++|+|.+| |++|..+.|+||..|+ +||.+..+++|.+.+++
T Consensus       133 mpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~-rVVGiaGg~eK~~~l~~  193 (340)
T COG2130         133 MPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTE  193 (340)
T ss_pred             CchHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCC-eEEEecCCHHHHHHHHH
Confidence            799999999999999999999999987 9999999999999999 99999999999999876

>smart00829 PKS_ER Enoylreductase

Probab=99.83  E-value=1.8e-19  Score=152.57  Aligned_cols=145  Identities=27%  Similarity=0.317  Sum_probs=128.9

Q ss_pred             EEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCC
Q 026414           39 IKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRG  118 (239)
Q Consensus        39 Vkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~  118 (239)
                      ||+.++++|++|+....+..+   .|.++|||++|+|+++|++++.|++||+|....                       
T Consensus         2 i~v~~~~i~~~d~~~~~g~~~---~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~-----------------------   55 (288)
T smart00829        2 VEVRAAGLNFRDVLIALGLLP---GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLA-----------------------   55 (288)
T ss_pred             eeEEEEecCHHHHHHhcCCCC---CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEc-----------------------
Confidence            899999999999999877643   356899999999999999999999999997431                       


Q ss_pred             CCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEE
Q 026414          119 ATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIV  198 (239)
Q Consensus       119 ~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~v  198 (239)
                               +                  |+|++|+.++.+.++++|+++++.+++.+.+++.+++.++.....+++|++|
T Consensus        56 ---------~------------------g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~v  108 (288)
T smart00829       56 ---------P------------------GSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESV  108 (288)
T ss_pred             ---------C------------------CceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEE
Confidence                     1                  2899999999999999999999999999998999999987778889999999


Q ss_pred             EEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          199 AVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       199 lI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +|+|+ |.+|++++++++..|+ +++++++++++.+.+++
T Consensus       109 lv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~  147 (288)
T smart00829      109 LIHAAAGGVGQAAIQLAQHLGA-EVFATAGSPEKRDFLRE  147 (288)
T ss_pred             EEecCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence            99986 9999999999999999 89999988888877643

Enoylreductase in Polyketide synthases.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.73  E-value=3.9e-17  Score=139.04  Aligned_cols=127  Identities=34%  Similarity=0.432  Sum_probs=111.1

Q ss_pred             CCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCcccccc
Q 026414           56 GKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSI  135 (239)
Q Consensus        56 g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~  135 (239)
                      |.++. ++|.++|||++|+|+++|+++++|++||+|+..                                         
T Consensus        14 ~~~~~-~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~-----------------------------------------   51 (277)
T cd08255          14 GTEKL-PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF-----------------------------------------   51 (277)
T ss_pred             cCccC-cCCcccCcceeEEEEEeCCCCCCCCCCCEEEec-----------------------------------------
Confidence            33443 488999999999999999999999999999742                                         


Q ss_pred             CCcceeeecCCcceeeeEEEecceeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHH
Q 026414          136 NGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAK  215 (239)
Q Consensus       136 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~  215 (239)
                                 +.|++|+.++...++++|+++++.+++.+ .++.++|+++ ...++++++++||+|+|.+|++++++|+
T Consensus        52 -----------~~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vlI~g~g~vg~~~i~~a~  118 (277)
T cd08255          52 -----------GPHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGV-RDAEPRLGERVAVVGLGLVGLLAAQLAK  118 (277)
T ss_pred             -----------CCcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHH
Confidence                       15889999999999999999999898888 7899999976 5788999999999988999999999999


Q ss_pred             HcCCCeEEEEcCChhhHhhhhh
Q 026414          216 AAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       216 ~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++|++++++++++++|.+++++
T Consensus       119 ~~g~~~vi~~~~~~~~~~~~~~  140 (277)
T cd08255         119 AAGAREVVGVDPDAARRELAEA  140 (277)
T ss_pred             HcCCCcEEEECCCHHHHHHHHH
Confidence            9999449999999998886654

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.57  E-value=9.5e-15  Score=139.68  Aligned_cols=158  Identities=18%  Similarity=0.203  Sum_probs=135.1

Q ss_pred             eEEEeecCCC---CCCCeEEEEEeEeeechhhhhhhcCCCCCCCCC-------eeeeeeEEEEEEEeCCCCCCCCCCCEE
Q 026414           22 LVIEDVQVAP---PQAGEVRIKILFTALCHTDAYTWSGKDPEGLFP-------CILGHEAAGIVESVGEGVTEVQPGDHV   91 (239)
Q Consensus        22 ~~~~~~~~p~---~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p-------~~~G~e~vG~Vv~vG~~v~~~~~Gd~V   91 (239)
                      +++.|.|...   ..++.=+-.|.|+.||..|+....|+.+....|       +++|-|++||          .+-|.||
T Consensus      1429 lrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGR----------d~~GrRv 1498 (2376)
T KOG1202|consen 1429 LRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGR----------DASGRRV 1498 (2376)
T ss_pred             eeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccc----------cCCCcEE
Confidence            7777777662   367777889999999999999999987655444       7899999998          4569999


Q ss_pred             eecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCchh
Q 026414           92 IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK  171 (239)
Q Consensus        92 ~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~  171 (239)
                      -....                               ..                  ++++-+.++.+++|.+|++-..++
T Consensus      1499 M~mvp-------------------------------Ak------------------sLATt~l~~rd~lWevP~~WTlee 1529 (2376)
T KOG1202|consen 1499 MGMVP-------------------------------AK------------------SLATTVLASRDFLWEVPSKWTLEE 1529 (2376)
T ss_pred             EEeee-------------------------------hh------------------hhhhhhhcchhhhhhCCcccchhh
Confidence            53211                               11                  678888899999999999999999


Q ss_pred             hhhcccccchhhhhhhhhcCCCCCCEEEEE-cCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhcC
Q 026414          172 VCLLGCGVPTGLGAVWNTAKVEPGSIVAVF-GLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWSY  239 (239)
Q Consensus       172 aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~-G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~~  239 (239)
                      |+..++.+.|+|+|+..+...|+|+++||+ |+|++|++||.+|.+.|+ +|+-++.+.+|++.+...|
T Consensus      1530 AstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~-~VFTTVGSaEKRefL~~rF 1597 (2376)
T KOG1202|consen 1530 ASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGC-TVFTTVGSAEKREFLLKRF 1597 (2376)
T ss_pred             cccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHHHcCC-EEEEecCcHHHHHHHHHhc
Confidence            999999999999999999999999999999 569999999999999999 9999999999999886544

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.57  E-value=1.1e-13  Score=116.46  Aligned_cols=160  Identities=25%  Similarity=0.273  Sum_probs=117.4

Q ss_pred             EEeecCC-CCCCCeEEEEEeEeeechhhhhhhcCCCCCC--CCCeeee----eeEEEEEEEeCCCCCCCCCCCEEeecCc
Q 026414           24 IEDVQVA-PPQAGEVRIKILFTALCHTDAYTWSGKDPEG--LFPCILG----HEAAGIVESVGEGVTEVQPGDHVIPCYQ   96 (239)
Q Consensus        24 ~~~~~~p-~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~--~~p~~~G----~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~   96 (239)
                      ..+++.+ ++++++||||.++.+..+...- +.+...+.  -.|+.+|    ..++|+|++.  +-.++++||.|..   
T Consensus        26 ~~~~el~~~~~s~~vlvknlYLS~DPymR~-rM~~~~~~~y~~~~~~G~pi~g~GV~kVi~S--~~~~~~~GD~v~g---   99 (343)
T KOG1196|consen   26 TTTVELRVPLGSGEVLVKNLYLSCDPYMRI-RMGKPDPSDYAPPYEPGKPIDGFGVAKVIDS--GHPNYKKGDLVWG---   99 (343)
T ss_pred             eeeecccCCCCCccEEeEeeeecCCHHHHh-hccCCCcccccCcccCCcEecCCceEEEEec--CCCCCCcCceEEE---
Confidence            3444444 4589999999999999765432 22221111  1222222    2679999995  4567999999952   


Q ss_pred             cCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc--eeEecCC--CCCchh-
Q 026414           97 AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDP--QAPLDK-  171 (239)
Q Consensus        97 ~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~p~--~~~~~~-  171 (239)
                                                 ..                      +|.+|.+++..  ..++++.  +.++.. 
T Consensus       100 ---------------------------~~----------------------gWeeysii~~~~~~~~ki~~~~~~pLs~y  130 (343)
T KOG1196|consen  100 ---------------------------IV----------------------GWEEYSVITPNDLEHFKIQHPTDVPLSYY  130 (343)
T ss_pred             ---------------------------ec----------------------cceEEEEecCcchhcccCCCCCccCHhhh
Confidence                                       22                      79999999764  3445443  333222 


Q ss_pred             hhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhcC
Q 026414          172 VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWSY  239 (239)
Q Consensus       172 aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~~  239 (239)
                      ...+.++.+|||...++...+++|++|+|-|| |++|.++.|+|+.+|+ .||....+++|.++++.+|
T Consensus       131 lg~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc-~VVGsaGS~EKv~ll~~~~  198 (343)
T KOG1196|consen  131 LGLLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGC-YVVGSAGSKEKVDLLKTKF  198 (343)
T ss_pred             hhccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCC-EEEEecCChhhhhhhHhcc
Confidence            23367789999999999999999999999988 9999999999999999 9999999999999998654

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.55  E-value=0.00019  Score=66.48  Aligned_cols=45  Identities=31%  Similarity=0.343  Sum_probs=42.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ..++++|+|+|+|.+|+++++.|+.+|+ .|+++|.+++|++.+++
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes  206 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES  206 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            5689999999999999999999999999 89999999999998865

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.16  E-value=0.0013  Score=59.48  Aligned_cols=54  Identities=26%  Similarity=0.406  Sum_probs=45.2

Q ss_pred             hhhhhhhcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          183 LGAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       183 ~~~~~~~~~-~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +.++.+..+ ..+|++|+|.|.|.+|+.+++.++.+|+ +|++++.++.|++.+..
T Consensus       189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~  243 (413)
T cd00401         189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM  243 (413)
T ss_pred             HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh
Confidence            444544444 4689999999999999999999999999 89999999998887754

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.01  E-value=1.5e-05  Score=72.40  Aligned_cols=128  Identities=16%  Similarity=0.176  Sum_probs=81.2

Q ss_pred             eeeeeeEEEEEEEeCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeec
Q 026414           65 CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFM  144 (239)
Q Consensus        65 ~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~  144 (239)
                      ..-|.|+++.+.+|+.+++.     .|++.+.. ||-|.+|    ...|.....   .|.. .++               
T Consensus        88 ~~~~~~a~~hl~~Va~GldS-----~V~GE~qI-~gQvk~a----~~~a~~~~~---~g~~-l~~---------------  138 (417)
T TIGR01035        88 ILTGESAVEHLFRVASGLDS-----MVVGETQI-LGQVKNA----YKVAQEEKT---VGKV-LER---------------  138 (417)
T ss_pred             hcCchHHHHHHHHHHhhhhh-----hhcCChHH-HHHHHHH----HHHHHHcCC---chHH-HHH---------------
Confidence            35688999999999998776     55555555 7777777    333443222   2222 233               


Q ss_pred             CCcceeeeEEEecceeEecCCCCCchhhhhcccccchhhhh---hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCe
Q 026414          145 GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA---VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASR  221 (239)
Q Consensus       145 ~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~---~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~  221 (239)
                         .|++++.++. .+.. .-.++       ..+.+.++.+   ........++++++|+|+|.+|.++++.++..|+..
T Consensus       139 ---lf~~a~~~~k-~vr~-~t~i~-------~~~vSv~~~Av~la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~  206 (417)
T TIGR01035       139 ---LFQKAFSVGK-RVRT-ETDIS-------AGAVSISSAAVELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVGK  206 (417)
T ss_pred             ---HHHHHHHHhh-hhhh-hcCCC-------CCCcCHHHHHHHHHHHHhCCccCCEEEEECChHHHHHHHHHHHHCCCCE
Confidence               7887777654 2221 00111       1111122222   223334467899999999999999999999999769


Q ss_pred             EEEEcCChhhHh
Q 026414          222 VIGIDIDPKKFD  233 (239)
Q Consensus       222 vv~~~~~~~~~~  233 (239)
                      |++++++.++.+
T Consensus       207 V~v~~rs~~ra~  218 (417)
T TIGR01035       207 ILIANRTYERAE  218 (417)
T ss_pred             EEEEeCCHHHHH
Confidence            999999988755

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.98  E-value=0.002  Score=49.21  Aligned_cols=45  Identities=27%  Similarity=0.279  Sum_probs=40.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      -++.+++|+|+|..|.+++..+...|+++++++.++.+|.+.+.+
T Consensus        10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~   54 (135)
T PF01488_consen   10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAE   54 (135)
T ss_dssp             GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHH
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHH
Confidence            368999999999999999999999999889999999998776654

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.96  E-value=0.00071  Score=59.04  Aligned_cols=77  Identities=19%  Similarity=0.162  Sum_probs=57.9

Q ss_pred             ceeEecCCCCCchhhhhcccccchhhhhhhhhcC---CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhh
Q 026414          158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK---VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (239)
Q Consensus       158 ~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~---~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~  234 (239)
                      +.++++|+.+..+.++... +.+.++.++.....   -.++.+|+|+|+|.+|.++++.++..|...|++++++.+|.+.
T Consensus       139 ~~a~~~~k~vr~et~i~~~-~~sv~~~Av~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~  217 (311)
T cd05213         139 QKAIKVGKRVRTETGISRG-AVSISSAAVELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEE  217 (311)
T ss_pred             HHHHHHHHHHhhhcCCCCC-CcCHHHHHHHHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            4667778888877777654 55566665422221   2478999999999999999999999887799999999887643


Q ss_pred             h
Q 026414          235 E  235 (239)
Q Consensus       235 ~  235 (239)
                      +
T Consensus       218 l  218 (311)
T cd05213         218 L  218 (311)
T ss_pred             H
Confidence            3

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=96.92  E-value=0.0038  Score=52.73  Aligned_cols=82  Identities=26%  Similarity=0.305  Sum_probs=53.4

Q ss_pred             eeeeEEEecceeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414          149 FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (239)
Q Consensus       149 ~~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~  228 (239)
                      |.+|.. +...++.+++.+++..+.--. +.. ....+.  ...+++++||-+|.|. |.+++.+++ .|..+++++|.+
T Consensus        79 ~~~~~~-~~~~~i~i~p~~afgtg~h~t-t~~-~l~~l~--~~~~~~~~VLDiGcGs-G~l~i~~~~-~g~~~v~giDis  151 (250)
T PRK00517         79 WEDPPD-PDEINIELDPGMAFGTGTHPT-TRL-CLEALE--KLVLPGKTVLDVGCGS-GILAIAAAK-LGAKKVLAVDID  151 (250)
T ss_pred             CcCCCC-CCeEEEEECCCCccCCCCCHH-HHH-HHHHHH--hhcCCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEEECC
Confidence            444433 567778888888766543211 110 111121  2256889999999987 887776554 677679999999


Q ss_pred             hhhHhhhhh
Q 026414          229 PKKFDREFW  237 (239)
Q Consensus       229 ~~~~~~~~~  237 (239)
                      +..++.+++
T Consensus       152 ~~~l~~A~~  160 (250)
T PRK00517        152 PQAVEAARE  160 (250)
T ss_pred             HHHHHHHHH
Confidence            988887754

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=96.53  E-value=0.0057  Score=56.71  Aligned_cols=44  Identities=32%  Similarity=0.380  Sum_probs=40.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      .++++++|+|+|.+|+++++.++.+|+ .|++++.++++++.++.
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~  205 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS  205 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            467999999999999999999999999 79999999999887764

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.26  E-value=0.014  Score=52.99  Aligned_cols=53  Identities=32%  Similarity=0.432  Sum_probs=42.5

Q ss_pred             hhhhhhhhcCCC-CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          182 GLGAVWNTAKVE-PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       182 a~~~~~~~~~~~-~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .|.++....++. .|++|+|.|.|.+|..+++.++.+|+ +|++++.++.|...+
T Consensus       198 ~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A  251 (425)
T PRK05476        198 LLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQA  251 (425)
T ss_pred             hHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHH
Confidence            345454443444 89999999999999999999999999 899999888775443

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.14  E-value=0.0058  Score=55.66  Aligned_cols=56  Identities=21%  Similarity=0.215  Sum_probs=43.5

Q ss_pred             ccchhhhhhhhhc---CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414          178 GVPTGLGAVWNTA---KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (239)
Q Consensus       178 ~~~ta~~~~~~~~---~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~  233 (239)
                      +.+.++.++....   ...++++++|+|+|.+|.++++.++..|+..+++++++.++.+
T Consensus       162 ~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~  220 (423)
T PRK00045        162 AVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAE  220 (423)
T ss_pred             CcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHH
Confidence            4445555542221   2367899999999999999999999999888999999988865

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.10  E-value=0.02  Score=51.79  Aligned_cols=52  Identities=29%  Similarity=0.452  Sum_probs=41.6

Q ss_pred             hhhhhhhcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          183 LGAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       183 ~~~~~~~~~-~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      +.++.+..+ ...|++|+|.|.|.+|..+++.++.+|+ +|++++.++.|...+
T Consensus       182 ~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A  234 (406)
T TIGR00936       182 IDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEA  234 (406)
T ss_pred             HHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHH
Confidence            344444434 4689999999999999999999999999 899998888765443

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>TIGR00518 alaDH alanine dehydrogenase

Probab=95.93  E-value=0.018  Score=51.55  Aligned_cols=42  Identities=29%  Similarity=0.317  Sum_probs=36.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ++.+|+|+|+|.+|+.+++.++.+|+ +|+++++++++++.+.
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~  207 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLD  207 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHH
Confidence            34569999999999999999999999 8999999988876654

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=95.84  E-value=0.023  Score=48.93  Aligned_cols=46  Identities=24%  Similarity=0.234  Sum_probs=41.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      ..+++++|+|+|+.+.+++..+...|+++++++.++.+|.+.+.+.
T Consensus       124 ~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~  169 (283)
T COG0169         124 VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADL  169 (283)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence            4589999999999999999999999988999999999998777654

>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B

Probab=95.70  E-value=0.01  Score=30.87  Aligned_cols=22  Identities=27%  Similarity=0.303  Sum_probs=16.1

Q ss_pred             eeEEEEecCCCCeEEEeecCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPP   32 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~   32 (239)
                      |||++++++++ ++++++|.|.+
T Consensus         1 MkAv~y~G~~~-v~ve~VpdP~I   22 (23)
T PF13823_consen    1 MKAVVYHGPKD-VRVEEVPDPKI   22 (23)
T ss_dssp             -EEEEEEETTE-EEEEEE----S
T ss_pred             CcceEEeCCCc-eEEEECCCccc
Confidence            89999999999 99999999975

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=95.67  E-value=0.039  Score=47.58  Aligned_cols=44  Identities=27%  Similarity=0.326  Sum_probs=38.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ..+.+++|+|+|+.|.+++..+...|++++++++++.+|.+.+.
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la  168 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALA  168 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence            35679999999999999999999999989999999998877654

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.66  E-value=0.035  Score=43.91  Aligned_cols=41  Identities=37%  Similarity=0.400  Sum_probs=34.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ..+|+|+|+|.+|..|+.+++.+|+ ++++.+...++++...
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~   60 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLE   60 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHH
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhh
Confidence            3788999999999999999999999 9999999888766554

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=95.63  E-value=0.047  Score=46.77  Aligned_cols=46  Identities=26%  Similarity=0.191  Sum_probs=39.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ...+++++|+|+|+.+.+++..+..+|+.+++++.++++|.+.+.+
T Consensus       119 ~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~  164 (272)
T PRK12550        119 VPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAE  164 (272)
T ss_pred             CCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence            3445689999999999999999999999889999999988776543

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.55  E-value=0.05  Score=47.17  Aligned_cols=41  Identities=34%  Similarity=0.413  Sum_probs=36.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .+.+++|+|.|.+|..+++.++.+|+ +|++++++.++.+.+
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~  191 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARI  191 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            68999999999999999999999998 999999998765544

>PLN02494 adenosylhomocysteinase

Probab=95.55  E-value=0.044  Score=50.32  Aligned_cols=52  Identities=35%  Similarity=0.467  Sum_probs=41.9

Q ss_pred             hhhhhhhcCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          183 LGAVWNTAKV-EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       183 ~~~~~~~~~~-~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      +.++.+..++ ..|++++|.|.|.+|...++.++.+|+ +|++++.++.+...+
T Consensus       241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA  293 (477)
T PLN02494        241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQA  293 (477)
T ss_pred             HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHH
Confidence            4445455443 679999999999999999999999999 899999888764433

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=95.47  E-value=0.035  Score=47.78  Aligned_cols=43  Identities=23%  Similarity=0.298  Sum_probs=38.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      .+.+++|+|+|+.+.+++..+..+|+++++++.++.+|.+.+.
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La  166 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLV  166 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence            5789999999999999999999999989999999988876654

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=95.37  E-value=0.043  Score=47.08  Aligned_cols=45  Identities=13%  Similarity=0.124  Sum_probs=38.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ..+.+++|+|+|.+|.+++..+...|+.+|+++.++.++.+.+.+
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~  165 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAK  165 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence            456899999999999999999999997699999999988765543

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=95.35  E-value=0.046  Score=46.48  Aligned_cols=48  Identities=29%  Similarity=0.550  Sum_probs=40.2

Q ss_pred             hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCChhhHhhhhh
Q 026414          189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDREFW  237 (239)
Q Consensus       189 ~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~-~vv~~~~~~~~~~~~~~  237 (239)
                      ...++++++||.+|.|. |..+.++++..|.. +|+++|.+++.++.+++
T Consensus        72 ~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~  120 (272)
T PRK11873         72 LAELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARA  120 (272)
T ss_pred             hccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHH
Confidence            45688999999999987 88888888887753 69999999998888764

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.31  E-value=0.056  Score=44.11  Aligned_cols=44  Identities=39%  Similarity=0.470  Sum_probs=38.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      -.|.+++|+|.|.+|..+++.+...|+ +|++++.++++.+.+.+
T Consensus        26 l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~~   69 (200)
T cd01075          26 LEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARAAE   69 (200)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH
Confidence            467899999999999999999999999 89999999887766543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=95.24  E-value=0.065  Score=46.16  Aligned_cols=44  Identities=25%  Similarity=0.229  Sum_probs=38.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ..+.+++|+|+|+.+.+++..+...|+++++++.++.+|.+.+.
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La  168 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALA  168 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Confidence            34789999999999999999888899989999999988876654

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=94.82  E-value=0.06  Score=50.85  Aligned_cols=37  Identities=30%  Similarity=0.370  Sum_probs=33.2

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (239)
Q Consensus       191 ~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~  228 (239)
                      ..+.|++|+|+|+|+.|+++++.++..|+ +|++++..
T Consensus       133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~  169 (564)
T PRK12771        133 APDTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAG  169 (564)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence            46789999999999999999999999999 78888854

>PRK08324 short chain dehydrogenase; Validated

Probab=94.78  E-value=0.064  Score=51.86  Aligned_cols=76  Identities=24%  Similarity=0.297  Sum_probs=51.9

Q ss_pred             ceeeeEEEecceeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc
Q 026414          148 TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID  226 (239)
Q Consensus       148 ~~~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~  226 (239)
                      ++++|..++...++.+ +..+.+++.....          ......+|+++||+|+ |.+|...++.+...|+ +|++++
T Consensus       386 ~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~----------~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~  453 (681)
T PRK08324        386 AVGRYEPLSEQEAFDI-EYWSLEQAKLQRM----------PKPKPLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLAD  453 (681)
T ss_pred             hcCCccCCChhhhcce-eeehhhhhhhhcC----------CCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEe
Confidence            4556666666666655 4444444432100          0122346899999987 9999999999999998 899999


Q ss_pred             CChhhHhhh
Q 026414          227 IDPKKFDRE  235 (239)
Q Consensus       227 ~~~~~~~~~  235 (239)
                      ++.++++.+
T Consensus       454 r~~~~~~~~  462 (681)
T PRK08324        454 LDEEAAEAA  462 (681)
T ss_pred             CCHHHHHHH
Confidence            988776544

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=94.50  E-value=0.13  Score=41.07  Aligned_cols=41  Identities=44%  Similarity=0.605  Sum_probs=35.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~  233 (239)
                      --.|.+|.|+|.|.+|...++.++.+|+ +|++.++.....+
T Consensus        33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~   73 (178)
T PF02826_consen   33 ELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEE   73 (178)
T ss_dssp             -STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHH
T ss_pred             ccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhh
Confidence            3468999999999999999999999999 9999999887644

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=94.47  E-value=0.14  Score=44.17  Aligned_cols=37  Identities=22%  Similarity=0.313  Sum_probs=32.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      ..+.+++|+|+|++|.+++..+...|+++|+++.+++
T Consensus       124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            3568899999999999988888899997799999886

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=94.34  E-value=0.12  Score=48.72  Aligned_cols=46  Identities=17%  Similarity=0.161  Sum_probs=39.2

Q ss_pred             hhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhh
Q 026414          188 NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (239)
Q Consensus       188 ~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~  234 (239)
                      ...+.+.|+++||+|+ |.+|...++.+...|+ +|++++++.++.+.
T Consensus        73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~  119 (576)
T PLN03209         73 KELDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAES  119 (576)
T ss_pred             cccccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHH
Confidence            4556778999999988 9999999999989998 89999988877653

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=94.25  E-value=0.12  Score=44.56  Aligned_cols=41  Identities=34%  Similarity=0.441  Sum_probs=36.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .|++++|+|.|.+|.+++..++.+|+ +|+++++++++.+.+
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~~  190 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSADLARI  190 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            57899999999999999999999998 999999988765443

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PLN02780 ketoreductase/ oxidoreductase

Probab=94.01  E-value=0.13  Score=45.00  Aligned_cols=42  Identities=21%  Similarity=0.256  Sum_probs=35.8

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       193 ~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      +.|.++||+|+ +++|...+..+...|+ +|+.+++++++++.+
T Consensus        51 ~~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~   93 (320)
T PLN02780         51 KYGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDV   93 (320)
T ss_pred             ccCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHH
Confidence            35899999998 9999998888878898 899999999887654

>PRK07831 short chain dehydrogenase; Provisional

Probab=93.90  E-value=0.16  Score=42.51  Aligned_cols=44  Identities=32%  Similarity=0.445  Sum_probs=35.7

Q ss_pred             CCCCCCEEEEEcC-C-HHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          191 KVEPGSIVAVFGL-G-TVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       191 ~~~~g~~vlI~G~-g-~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      ...+++++||+|+ | ++|.+.++.+...|+ +|+++++++++++..
T Consensus        13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~   58 (262)
T PRK07831         13 GLLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGET   58 (262)
T ss_pred             cccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            3445789999987 6 799999999999998 788888887765543

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=93.76  E-value=0.32  Score=37.34  Aligned_cols=43  Identities=23%  Similarity=0.275  Sum_probs=35.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      ..+.+++|+|+|.+|...++.+...|...+++++++.++.+.+
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~   59 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKAL   59 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHH
Confidence            4568899999999999999988888755899999988776554

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=93.68  E-value=0.24  Score=45.03  Aligned_cols=46  Identities=13%  Similarity=0.086  Sum_probs=39.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      --.+.++||+|+|.+|.+++..+...|+..++++.++.+|.+.+.+
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~  223 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITS  223 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            3467899999999999999999999998899999999887665543

>PRK05866 short chain dehydrogenase; Provisional

Probab=93.67  E-value=0.19  Score=43.26  Aligned_cols=41  Identities=24%  Similarity=0.319  Sum_probs=34.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .+.++||+|+ |.+|...++.+...|+ +|+++++++++++.+
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~   80 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAV   80 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            4578999988 9999999998888998 899999988776544

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=93.62  E-value=0.28  Score=42.34  Aligned_cols=37  Identities=14%  Similarity=0.262  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      .+.++||+|+|+.+.+++..+...|+++++++.++++
T Consensus       123 ~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~  159 (288)
T PRK12749        123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE  159 (288)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence            5679999999988988777777789989999999853

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=93.52  E-value=0.31  Score=44.93  Aligned_cols=40  Identities=38%  Similarity=0.546  Sum_probs=35.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~  232 (239)
                      .-.|++++|+|.|.+|...++.++.+|+ +|+++++++.+.
T Consensus       251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a  290 (476)
T PTZ00075        251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICA  290 (476)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhH
Confidence            4589999999999999999999999999 899998776654

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=93.43  E-value=0.34  Score=38.39  Aligned_cols=59  Identities=20%  Similarity=0.133  Sum_probs=40.5

Q ss_pred             hhcccccchhhhhhhhhcCCCCCCEEEEEcCCH-HHHHHHHHHHHcCCCeEEEEcCChhhH
Q 026414          173 CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPKKF  232 (239)
Q Consensus       173 a~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~-~g~~ai~~~~~~G~~~vv~~~~~~~~~  232 (239)
                      ...++...++...+.....--.+.++||+|+|. +|..++..++..|+ +|+++.++.+.+
T Consensus        22 ~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~~~l   81 (168)
T cd01080          22 GFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKTKNL   81 (168)
T ss_pred             CccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCchhH
Confidence            334443333333333333446889999999986 59989999999999 788888775444

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=93.34  E-value=0.41  Score=41.22  Aligned_cols=44  Identities=32%  Similarity=0.426  Sum_probs=34.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      .+++++||-+|.|. |.+++.+++ .|..+++++|.++..++.+++
T Consensus       157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~  200 (288)
T TIGR00406       157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARK  200 (288)
T ss_pred             cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHH
Confidence            45789999999877 777776665 577799999999987776653

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK06196 oxidoreductase; Provisional

Probab=93.23  E-value=0.23  Score=42.99  Aligned_cols=41  Identities=27%  Similarity=0.289  Sum_probs=34.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .+.++||+|+ |.+|...+..+...|+ +|++++++.++.+.+
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~   66 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREA   66 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4679999988 9999999998888998 889999888766543

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=93.11  E-value=0.34  Score=41.31  Aligned_cols=43  Identities=26%  Similarity=0.222  Sum_probs=36.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      ...+.+++|+|+|.+|.+++..+...|+ .+++++++++|.+.+
T Consensus       114 ~~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~~~~~~l  156 (270)
T TIGR00507       114 LRPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTVSKAEEL  156 (270)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            3457899999999999999988888898 899999988776544

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK04148 hypothetical protein; Provisional

Probab=93.03  E-value=0.27  Score=37.47  Aligned_cols=43  Identities=28%  Similarity=0.366  Sum_probs=34.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      .++.+++++|.| .|...+..+..+|. .|+++|.+++..+.+++
T Consensus        15 ~~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~   57 (134)
T PRK04148         15 GKNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEKAVEKAKK   57 (134)
T ss_pred             ccCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
Confidence            456789999999 88755666668898 99999999998876654

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=92.72  E-value=0.29  Score=40.72  Aligned_cols=36  Identities=28%  Similarity=0.394  Sum_probs=32.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCC--eEEEEcCC
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGAS--RVIGIDID  228 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~--~vv~~~~~  228 (239)
                      -.+.+++|+|+|..|..++..+...|++  ++++++++
T Consensus        23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            4667999999999999999999999998  89999998

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK06197 short chain dehydrogenase; Provisional

Probab=92.70  E-value=0.27  Score=42.30  Aligned_cols=39  Identities=26%  Similarity=0.264  Sum_probs=33.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~  233 (239)
                      .+.++||+|+ |.+|...++.+...|+ +|+++.++.++.+
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~   54 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGK   54 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            5689999988 9999999998888898 8888888876644

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=92.16  E-value=0.43  Score=38.39  Aligned_cols=41  Identities=29%  Similarity=0.375  Sum_probs=34.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .+.+++|+|+ |.+|...+..+...|. +|+++.++.++.+.+
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l   68 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKA   68 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence            5689999987 9999988888888887 899998888776544

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=91.96  E-value=0.38  Score=45.20  Aligned_cols=42  Identities=33%  Similarity=0.434  Sum_probs=36.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      .+.++||+|+|++|.+++..+...|+ +|+++.++.+|.+.+.
T Consensus       378 ~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR~~e~a~~la  419 (529)
T PLN02520        378 AGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANRTYERAKELA  419 (529)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence            46789999999999999999999999 8999999887766554

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=91.89  E-value=0.46  Score=38.39  Aligned_cols=49  Identities=22%  Similarity=0.388  Sum_probs=40.4

Q ss_pred             hhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChhhHhhhhh
Q 026414          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       188 ~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G-~~~vv~~~~~~~~~~~~~~  237 (239)
                      ....+.++++||-+|+|. |..++.+++..+ ..+|++++.+++.++.+++
T Consensus        34 ~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~   83 (198)
T PRK00377         34 SKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRR   83 (198)
T ss_pred             HHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence            556788999999999977 888888888765 2489999999998887654

>PLN02253 xanthoxin dehydrogenase

Probab=91.76  E-value=0.49  Score=39.99  Aligned_cols=39  Identities=21%  Similarity=0.227  Sum_probs=32.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~  233 (239)
                      .+.++||+|+ |.+|...++.+...|+ +|+++++++++.+
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~~~~   56 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDDLGQ   56 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHH
Confidence            4678999988 9999998888888998 8888888765543

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=91.63  E-value=0.54  Score=31.98  Aligned_cols=34  Identities=29%  Similarity=0.391  Sum_probs=29.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       197 ~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      +++|+|+|.+|+-.+..+..+|. +|+.+.+++.-
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~~   34 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDRL   34 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccchh
Confidence            57889999999999999999998 88888887753

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PLN00203 glutamyl-tRNA reductase

Probab=91.61  E-value=0.38  Score=45.02  Aligned_cols=43  Identities=14%  Similarity=0.274  Sum_probs=37.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      .+.+|+|+|+|.+|.+++..+...|+..|+++.++.++.+.+.
T Consensus       265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La  307 (519)
T PLN00203        265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALR  307 (519)
T ss_pred             CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Confidence            3689999999999999999999999878999999988876654

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=91.51  E-value=0.39  Score=43.20  Aligned_cols=55  Identities=22%  Similarity=0.280  Sum_probs=43.5

Q ss_pred             hhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       181 ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ..+..+.....++++++||-+|.| .|..+..+++..|+ +|++++.+++.++.+++
T Consensus       154 ~k~~~l~~~l~l~~g~rVLDIGcG-~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~  208 (383)
T PRK11705        154 AKLDLICRKLQLKPGMRVLDIGCG-WGGLARYAAEHYGV-SVVGVTISAEQQKLAQE  208 (383)
T ss_pred             HHHHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            334445677788999999999874 45667788888888 99999999998888765

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=91.28  E-value=0.66  Score=36.55  Aligned_cols=42  Identities=36%  Similarity=0.509  Sum_probs=32.3

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (239)
Q Consensus       191 ~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~  233 (239)
                      ..-.|++++|.|=|.+|...++.++.+|+ +|++++.++-+.-
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~al   60 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIRAL   60 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHHHH
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHHHH
Confidence            35689999999999999999999999999 9999999886543

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=91.21  E-value=0.14  Score=37.07  Aligned_cols=35  Identities=34%  Similarity=0.282  Sum_probs=30.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .|.+|||.|+|.++..-++.+...|+ +|++++...
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~   40 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI   40 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch
Confidence            57899999999999999999999998 888888773

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=90.91  E-value=0.85  Score=31.95  Aligned_cols=41  Identities=29%  Similarity=0.379  Sum_probs=33.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC---CCeEE-EEcCChhhHhhhhhc
Q 026414          197 IVAVFGLGTVGLAVAEGAKAAG---ASRVI-GIDIDPKKFDREFWS  238 (239)
Q Consensus       197 ~vlI~G~g~~g~~ai~~~~~~G---~~~vv-~~~~~~~~~~~~~~~  238 (239)
                      ++.|+|.|.+|.+.+.-+...|   . +++ +.+++++|.+.+.+.
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~-~v~~~~~r~~~~~~~~~~~   45 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPH-EVIIVSSRSPEKAAELAKE   45 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GG-EEEEEEESSHHHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCce-eEEeeccCcHHHHHHHHHh
Confidence            4677899999999998888888   6 677 559999988777543

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=90.84  E-value=0.54  Score=39.65  Aligned_cols=38  Identities=29%  Similarity=0.419  Sum_probs=34.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      ..+-.+++|.|+|.++...+++++.+|+ +|+++|..++
T Consensus        97 ~~p~~~L~IfGaG~va~~la~la~~lGf-~V~v~D~R~~  134 (246)
T TIGR02964        97 APPAPHVVLFGAGHVGRALVRALAPLPC-RVTWVDSREA  134 (246)
T ss_pred             cCCCCEEEEECCcHHHHHHHHHHhcCCC-EEEEEeCCcc
Confidence            4677899999999999999999999999 9999887765

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=90.67  E-value=0.5  Score=40.47  Aligned_cols=50  Identities=22%  Similarity=0.274  Sum_probs=34.8

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +.++.++++|++||-+|.| -|..+..+++..|+ +|+++..+++..+.+++
T Consensus        54 ~~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~  103 (273)
T PF02353_consen   54 LCEKLGLKPGDRVLDIGCG-WGGLAIYAAERYGC-HVTGITLSEEQAEYARE  103 (273)
T ss_dssp             HHTTTT--TT-EEEEES-T-TSHHHHHHHHHH---EEEEEES-HHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHcCc-EEEEEECCHHHHHHHHH
Confidence            5688899999999999886 45556677777798 99999999988887754

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=90.58  E-value=0.89  Score=33.02  Aligned_cols=39  Identities=33%  Similarity=0.538  Sum_probs=32.9

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       198 vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++|.|.|.+|...++.++..+. ++++++.++++.+.+.+
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~~~~~~~~~   39 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDPERVEELRE   39 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCcHHHHHHHh
Confidence            5788999999999999999665 99999999988887764

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK06484 short chain dehydrogenase; Validated

Probab=90.53  E-value=0.67  Score=43.01  Aligned_cols=43  Identities=35%  Similarity=0.388  Sum_probs=36.5

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       193 ~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ..++++||+|+ +++|...++.+...|+ +|+++++++++++.+.
T Consensus       267 ~~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~  310 (520)
T PRK06484        267 ESPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLA  310 (520)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            46789999988 9999999998889998 9999999887766543

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=90.27  E-value=1.3  Score=36.68  Aligned_cols=37  Identities=35%  Similarity=0.395  Sum_probs=32.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      -.|.+++|.|-|.+|..+++++...|.+.|.++|++.
T Consensus        21 l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211          21 LEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            4688999999999999999999999986677777766

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK06720 hypothetical protein; Provisional

Probab=90.02  E-value=1.1  Score=35.50  Aligned_cols=39  Identities=31%  Similarity=0.282  Sum_probs=32.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~  233 (239)
                      .+.+++|+|+ +++|...+..+...|+ +|++++++++..+
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~   54 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQ   54 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence            5789999988 8899998888888898 8999988776543

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=90.01  E-value=0.79  Score=41.59  Aligned_cols=39  Identities=33%  Similarity=0.541  Sum_probs=33.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~  233 (239)
                      .+++++|+|+ |.+|.+.+..+...|+ +|+++++++++++
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r~~~~l~  216 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGA-KVVALTSNSDKIT  216 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            4679999988 9999999988888998 8888888776654

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=89.90  E-value=0.91  Score=32.50  Aligned_cols=42  Identities=38%  Similarity=0.549  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCChhhHhhhhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~-~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      |+++||-+|+|. |..++.+++ ..++ ++++++.+++-++.+++
T Consensus         1 p~~~vLDlGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~   43 (112)
T PF12847_consen    1 PGGRVLDLGCGT-GRLSIALARLFPGA-RVVGVDISPEMLEIARE   43 (112)
T ss_dssp             TTCEEEEETTTT-SHHHHHHHHHHTTS-EEEEEESSHHHHHHHHH
T ss_pred             CCCEEEEEcCcC-CHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHH
Confidence            678999888754 555566666 4676 99999999998888765

...

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=89.78  E-value=0.87  Score=37.99  Aligned_cols=41  Identities=27%  Similarity=0.143  Sum_probs=33.2

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 026414          191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (239)
Q Consensus       191 ~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~  232 (239)
                      .-..+.++||+|+ |.+|...+..+...|. .|+++.++.++.
T Consensus        13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~-~V~~~~R~~~~~   54 (251)
T PLN00141         13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGF-AVKAGVRDVDKA   54 (251)
T ss_pred             ccccCCeEEEECCCcHHHHHHHHHHHhCCC-EEEEEecCHHHH
Confidence            3334679999998 9999999988888898 888888777654

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=89.77  E-value=1.2  Score=32.34  Aligned_cols=49  Identities=22%  Similarity=0.382  Sum_probs=38.0

Q ss_pred             hhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       188 ~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ....+++++++|-+|.|. |..+..+++..+..+++++|.++...+.+++
T Consensus        13 ~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~   61 (124)
T TIGR02469        13 SKLRLRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIER   61 (124)
T ss_pred             HHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHH
Confidence            444567788888888866 8888888887654599999999988777653

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK14982 acyl-ACP reductase; Provisional

Probab=89.66  E-value=0.88  Score=40.28  Aligned_cols=44  Identities=23%  Similarity=0.321  Sum_probs=35.7

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHH-cCCCeEEEEcCChhhHhhhh
Q 026414          193 EPGSIVAVFGL-GTVGLAVAEGAKA-AGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       193 ~~g~~vlI~G~-g~~g~~ai~~~~~-~G~~~vv~~~~~~~~~~~~~  236 (239)
                      -.+.+|+|+|+ |.+|...++.+.. .|...++.+.++++++..+.
T Consensus       153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La  198 (340)
T PRK14982        153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQ  198 (340)
T ss_pred             cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHH
Confidence            46789999999 9999988888864 57779999999888776654

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=89.39  E-value=1.1  Score=36.61  Aligned_cols=35  Identities=29%  Similarity=0.346  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~  228 (239)
                      .+.+|+|.|.|++|..+++.+..+|+.+++.+|.+
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            45789999999999999999999999899999977

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=89.17  E-value=0.5  Score=41.13  Aligned_cols=44  Identities=27%  Similarity=0.275  Sum_probs=38.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhcC
Q 026414          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWSY  239 (239)
Q Consensus       195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~~  239 (239)
                      ..+|.|+|.|.+|.-++.+|.-+|+ +|++.+.+.+|++.+.+.|
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f  211 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLF  211 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhh
Confidence            3466777999999999999999999 9999999999998887654

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=89.11  E-value=0.98  Score=39.53  Aligned_cols=44  Identities=18%  Similarity=0.182  Sum_probs=37.2

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       193 ~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      -.+.+++|+|+ +++|...+..+-..|+ +|+...++.++.+.+.+
T Consensus        33 ~~~~~~vVTGansGIG~eta~~La~~Ga-~Vv~~~R~~~~~~~~~~   77 (314)
T KOG1208|consen   33 LSGKVALVTGATSGIGFETARELALRGA-HVVLACRNEERGEEAKE   77 (314)
T ss_pred             CCCcEEEEECCCCchHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHH
Confidence            34578899998 9999999999999997 99999999877766643

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=89.10  E-value=1.5  Score=40.32  Aligned_cols=35  Identities=34%  Similarity=0.352  Sum_probs=30.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEE-EEcCC
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVI-GIDID  228 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv-~~~~~  228 (239)
                      -.|.+|+|.|.|.+|..+++.+..+|+ +|+ +.|++
T Consensus       235 l~Gk~VaVqG~GnVg~~aa~~L~e~Ga-kVVavSD~~  270 (454)
T PTZ00079        235 LEGKTVVVSGSGNVAQYAVEKLLQLGA-KVLTMSDSD  270 (454)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEcCC
Confidence            478999999999999999999999999 666 66665

>PRK08328 hypothetical protein; Provisional

Probab=88.89  E-value=0.96  Score=37.71  Aligned_cols=36  Identities=39%  Similarity=0.461  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .+.+|+|.|+|++|..++..+...|..+++.+|.+.
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            457899999999999999999999999999998654

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=88.84  E-value=1.4  Score=39.97  Aligned_cols=45  Identities=18%  Similarity=0.160  Sum_probs=40.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      -.+.++||+|+|-+|.+++..+...|...++++-++.+|.+.+.+
T Consensus       176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~  220 (414)
T COG0373         176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAK  220 (414)
T ss_pred             cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence            477899999999999999999999998899999999988776544

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=88.78  E-value=0.81  Score=44.09  Aligned_cols=36  Identities=33%  Similarity=0.455  Sum_probs=32.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      ..+.+|+|+|+|+.|+.++..+...|+ +|++++..+
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~  360 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHP  360 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            358899999999999999999999999 788888754

>PLN02686 cinnamoyl-CoA reductase

Probab=88.69  E-value=1.2  Score=39.75  Aligned_cols=38  Identities=21%  Similarity=0.158  Sum_probs=31.1

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       193 ~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      ..+++|||+|+ |.+|...+..+...|+ .|+++.++.++
T Consensus        51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~-~V~~~~r~~~~   89 (367)
T PLN02686         51 AEARLVCVTGGVSFLGLAIVDRLLRHGY-SVRIAVDTQED   89 (367)
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCC-EEEEEeCCHHH
Confidence            45789999988 9999999999999998 78776665544

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=88.67  E-value=1.6  Score=40.56  Aligned_cols=41  Identities=22%  Similarity=0.243  Sum_probs=35.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .+.+++|+|+|.+|.+++..+...|+ .++++++++++.+.+
T Consensus       331 ~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R~~~~~~~l  371 (477)
T PRK09310        331 NNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNRTKAHAEAL  371 (477)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            56789999999999999999999998 888888888776654

>PLN02928 oxidoreductase family protein

Probab=88.40  E-value=0.99  Score=40.05  Aligned_cols=35  Identities=20%  Similarity=0.454  Sum_probs=32.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~  228 (239)
                      -.|.++.|+|.|.+|..+++.++.+|+ +|++++++
T Consensus       157 l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~  191 (347)
T PLN02928        157 LFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRS  191 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCC
Confidence            357899999999999999999999999 99999876

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=88.10  E-value=1.1  Score=29.64  Aligned_cols=30  Identities=33%  Similarity=0.424  Sum_probs=25.6

Q ss_pred             EEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          200 VFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       200 I~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      |+|+|..|+.++..++..|. +|.++++++.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~-~v~v~E~~~~   30 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGY-RVTVFEKNDR   30 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTS-EEEEEESSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCC-cEEEEecCcc
Confidence            67999999999999999998 9999987763

...

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=88.06  E-value=1.2  Score=38.63  Aligned_cols=42  Identities=31%  Similarity=0.305  Sum_probs=35.2

Q ss_pred             CCCCEEEEEcC-CHHHHH-HHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          193 EPGSIVAVFGL-GTVGLA-VAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       193 ~~g~~vlI~G~-g~~g~~-ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      +.|+|.+|+|+ .++|.. |-++|+ .|+ +|+.+.++++|++..+
T Consensus        47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~-nvvLIsRt~~KL~~v~   90 (312)
T KOG1014|consen   47 KLGSWAVVTGATDGIGKAYARELAK-RGF-NVVLISRTQEKLEAVA   90 (312)
T ss_pred             hcCCEEEEECCCCcchHHHHHHHHH-cCC-EEEEEeCCHHHHHHHH
Confidence            45799999999 899977 555665 999 8999999999998775

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=87.60  E-value=1  Score=37.79  Aligned_cols=36  Identities=33%  Similarity=0.465  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .+.+|+|.|+|++|..+++.+...|..+++.+|.+.
T Consensus        23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            347899999999999999999999999999998665

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=87.48  E-value=1.2  Score=41.14  Aligned_cols=36  Identities=42%  Similarity=0.582  Sum_probs=31.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      +.+++|+|+|+|+.|+.++..++..|+ .|++++..+
T Consensus       139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~  174 (467)
T TIGR01318       139 PTGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHP  174 (467)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCC
Confidence            367899999999999999999999999 788887654

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=87.22  E-value=1.5  Score=42.58  Aligned_cols=40  Identities=25%  Similarity=0.317  Sum_probs=34.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~  234 (239)
                      .+.++||+|+ |.+|...++.+...|+ +|++++++.++.+.
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~~~~~~~  453 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNLEAAEA  453 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCCHHHHHH
Confidence            4789999988 9999999998888998 89999988776544

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=87.18  E-value=1.3  Score=41.66  Aligned_cols=44  Identities=20%  Similarity=0.145  Sum_probs=35.7

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       193 ~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      -.|++|||+|+ |++|.-.+.-....+.++++.+++++.++....
T Consensus       248 ~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~  292 (588)
T COG1086         248 LTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLID  292 (588)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHH
Confidence            46899999988 999987665555669889999999998876553

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=87.16  E-value=1.6  Score=32.94  Aligned_cols=35  Identities=29%  Similarity=0.416  Sum_probs=30.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      ..+|+|.|+|++|...+..+-..|+.+++.+|...
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            46899999999999999999999999999998765

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=86.98  E-value=1.2  Score=42.01  Aligned_cols=41  Identities=24%  Similarity=0.289  Sum_probs=37.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++++|.|.|.+|...++.++..|. .++++|.++++.+.+++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~  458 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRE  458 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH
Confidence            688999999999999999999998 99999999999887764

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=86.81  E-value=2.3  Score=29.38  Aligned_cols=35  Identities=31%  Similarity=0.434  Sum_probs=29.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI  227 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~  227 (239)
                      -++.+++|.|.|.+|..+++.+...|..++.+.++
T Consensus        21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            46789999999999999999999986657777765

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK07201 short chain dehydrogenase; Provisional

Probab=86.67  E-value=1.6  Score=41.66  Aligned_cols=40  Identities=28%  Similarity=0.361  Sum_probs=34.0

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       195 g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      +.++||+|+ |.+|...+..+...|+ +|+++++++++++.+
T Consensus       371 ~k~vlItGas~giG~~la~~l~~~G~-~V~~~~r~~~~~~~~  411 (657)
T PRK07201        371 GKVVLITGASSGIGRATAIKVAEAGA-TVFLVARNGEALDEL  411 (657)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            678999988 9999999988888998 899999988775543

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=86.64  E-value=1.9  Score=33.67  Aligned_cols=32  Identities=28%  Similarity=0.425  Sum_probs=27.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID  226 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~  226 (239)
                      .|.+|||.|+|.+|.--++.+...|+ .|++++
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIs   43 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVS   43 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEc
Confidence            57899999999999998888888998 777774

>PRK05855 short chain dehydrogenase; Validated

Probab=86.54  E-value=1.7  Score=40.44  Aligned_cols=41  Identities=32%  Similarity=0.451  Sum_probs=34.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .+.++||+|+ |.+|...++.+...|. +|+++++++++++.+
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~  355 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGA-EVVASDIDEAAAERT  355 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4578999988 9999998888888999 799999988776543

>PRK14967 putative methyltransferase; Provisional

Probab=86.54  E-value=2.5  Score=34.73  Aligned_cols=48  Identities=25%  Similarity=0.342  Sum_probs=37.2

Q ss_pred             hhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       188 ~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ....++++++||-.|+|. |..++.+++. |..++++++.+++.++.+++
T Consensus        30 ~~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~   77 (223)
T PRK14967         30 AAEGLGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARL   77 (223)
T ss_pred             HhcccCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHH
Confidence            344577889999999977 8777777765 65699999999988776543

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=86.50  E-value=3.9  Score=35.52  Aligned_cols=74  Identities=27%  Similarity=0.382  Sum_probs=43.8

Q ss_pred             cceeEecCCCCCchhhhhcccccchhhhhhhhh-cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          157 DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       157 ~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~-~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      ....+++.+.+.+    .......|++. +... ...++|.+||=+|.|+ |.++|..+ .+|+.+++++|.++-..+.+
T Consensus       129 ~~~~i~lDPGlAF----GTG~HpTT~lc-L~~Le~~~~~g~~vlDvGcGS-GILaIAa~-kLGA~~v~g~DiDp~AV~aa  201 (300)
T COG2264         129 DELNIELDPGLAF----GTGTHPTTSLC-LEALEKLLKKGKTVLDVGCGS-GILAIAAA-KLGAKKVVGVDIDPQAVEAA  201 (300)
T ss_pred             CceEEEEcccccc----CCCCChhHHHH-HHHHHHhhcCCCEEEEecCCh-hHHHHHHH-HcCCceEEEecCCHHHHHHH
Confidence            3566777666533    22233334433 2222 2356888988777632 55554444 46887999999998766665


Q ss_pred             hh
Q 026414          236 FW  237 (239)
Q Consensus       236 ~~  237 (239)
                      ++
T Consensus       202 ~e  203 (300)
T COG2264         202 RE  203 (300)
T ss_pred             HH
Confidence            53

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=86.48  E-value=2.6  Score=38.10  Aligned_cols=37  Identities=35%  Similarity=0.461  Sum_probs=32.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      -+|.+|.|.|.|.+|..+++.+..+|+ +|++++.+..
T Consensus       205 l~G~rVaVQG~GNVg~~aa~~l~~~GA-kvva~sds~g  241 (411)
T COG0334         205 LEGARVAVQGFGNVGQYAAEKLHELGA-KVVAVSDSKG  241 (411)
T ss_pred             cCCCEEEEECccHHHHHHHHHHHHcCC-EEEEEEcCCC
Confidence            489999999999999999999999999 7777776654

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=86.23  E-value=1.6  Score=38.14  Aligned_cols=35  Identities=37%  Similarity=0.491  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .|.++.|+|-|.+|...++.++.+|+ +|++.++..
T Consensus       144 ~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~~~  178 (311)
T PRK08410        144 KGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYSTSG  178 (311)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECCCc
Confidence            68899999999999999999999999 999998753

>PRK13243 glyoxylate reductase; Reviewed

Probab=86.19  E-value=1.6  Score=38.40  Aligned_cols=36  Identities=33%  Similarity=0.532  Sum_probs=32.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.+++.+
T Consensus       149 ~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~  184 (333)
T PRK13243        149 YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRK  184 (333)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCC
Confidence            57899999999999999999999999 8999987654

>PRK07985 oxidoreductase; Provisional

Probab=86.03  E-value=1.7  Score=37.22  Aligned_cols=34  Identities=24%  Similarity=0.101  Sum_probs=28.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~  228 (239)
                      .+.++||+|+ |.+|...++.+...|+ +|+++.++
T Consensus        48 ~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~   82 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLP   82 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCC
Confidence            5679999988 9999999999989998 77777643

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=85.86  E-value=1.5  Score=42.23  Aligned_cols=35  Identities=37%  Similarity=0.455  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .+++|+|+|+|+.|+.++..++..|. .|++++..+
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~  343 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHP  343 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCC
Confidence            48999999999999999999999999 788888765

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=85.86  E-value=1.9  Score=37.23  Aligned_cols=39  Identities=26%  Similarity=0.341  Sum_probs=31.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~  233 (239)
                      .|+.|||+|+ +++|.+.++-...+|+ +++..|.+++-.+
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~   76 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNE   76 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchH
Confidence            6899999987 8999887766667888 8888888875443

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=85.71  E-value=1.9  Score=36.25  Aligned_cols=36  Identities=33%  Similarity=0.456  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      ...+|+|.|+|++|..++..+...|..+++++|.+.
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   66 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT   66 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            457999999999999999999999998999998654

>PRK06128 oxidoreductase; Provisional

Probab=85.67  E-value=1.9  Score=36.99  Aligned_cols=34  Identities=21%  Similarity=0.183  Sum_probs=28.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~  228 (239)
                      .+.++||+|+ |.+|...+..+...|+ +|+++.++
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~   88 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLP   88 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCC
Confidence            5689999988 9999999988888998 77776544

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=85.58  E-value=2.1  Score=39.09  Aligned_cols=35  Identities=31%  Similarity=0.467  Sum_probs=30.3

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (239)
Q Consensus       193 ~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~  228 (239)
                      .++.++||+|+ |.+|...++.+...|+ +|+++++.
T Consensus       208 ~~g~~vlItGasggIG~~la~~l~~~Ga-~vi~~~~~  243 (450)
T PRK08261        208 LAGKVALVTGAARGIGAAIAEVLARDGA-HVVCLDVP  243 (450)
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            35789999988 9999999999999998 88888764

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=85.57  E-value=1.8  Score=38.71  Aligned_cols=35  Identities=29%  Similarity=0.259  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~  228 (239)
                      .+.+|+|+|+|++|..++..+...|..+++.+|.+
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            56789999999999999999999999999999987

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=85.50  E-value=1.9  Score=38.82  Aligned_cols=42  Identities=21%  Similarity=0.263  Sum_probs=34.5

Q ss_pred             hcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          189 TAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       189 ~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      +.+...+.+|||+|+ |.+|...+..+...|. .|++++++..+
T Consensus        54 ~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~~~~   96 (390)
T PLN02657         54 RSKEPKDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAREKSG   96 (390)
T ss_pred             cccCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEechhh
Confidence            344556779999988 9999999999999998 88888887643

>PRK06701 short chain dehydrogenase; Provisional

Probab=85.39  E-value=2.4  Score=36.24  Aligned_cols=37  Identities=24%  Similarity=0.237  Sum_probs=30.3

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       192 ~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .-++.++||+|+ |.+|...+..+...|+ +|+.+.+++
T Consensus        43 ~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~   80 (290)
T PRK06701         43 KLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDE   80 (290)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            335789999988 9999998888888998 788877664

>PRK07574 formate dehydrogenase; Provisional

Probab=85.30  E-value=2.1  Score=38.54  Aligned_cols=35  Identities=29%  Similarity=0.386  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++..
T Consensus       191 ~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~  225 (385)
T PRK07574        191 EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHR  225 (385)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCC
Confidence            57899999999999999999999999 999999875

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=85.29  E-value=2.2  Score=37.25  Aligned_cols=47  Identities=28%  Similarity=0.216  Sum_probs=39.6

Q ss_pred             cCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          190 AKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       190 ~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ...++...++|+|. .++|++.+..++..|+ .|.++.++.+|+..+++
T Consensus        28 ~~~k~~~hi~itggS~glgl~la~e~~~~ga-~Vti~ar~~~kl~~a~~   75 (331)
T KOG1210|consen   28 VKPKPRRHILITGGSSGLGLALALECKREGA-DVTITARSGKKLLEAKA   75 (331)
T ss_pred             cccCccceEEEecCcchhhHHHHHHHHHccC-ceEEEeccHHHHHHHHh
Confidence            33456688999966 9999999999999998 99999999999887754

>PRK06436 glycerate dehydrogenase; Provisional

Probab=85.15  E-value=2  Score=37.39  Aligned_cols=35  Identities=26%  Similarity=0.284  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++.
T Consensus       121 ~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~~  155 (303)
T PRK06436        121 YNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRSY  155 (303)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            68999999999999999999999999 999998753

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=85.05  E-value=2  Score=37.83  Aligned_cols=33  Identities=48%  Similarity=0.741  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI  227 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~  227 (239)
                      .|.||-|+|.|.+|...++.++.+|+ +|++.++
T Consensus       141 ~gkTvGIiG~G~IG~~va~~l~afgm-~v~~~d~  173 (324)
T COG0111         141 AGKTVGIIGLGRIGRAVAKRLKAFGM-KVIGYDP  173 (324)
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCC-eEEEECC
Confidence            37899999999999999999999999 9999998

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=85.01  E-value=2.1  Score=34.87  Aligned_cols=35  Identities=37%  Similarity=0.541  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~  228 (239)
                      ...+|+|.|+|++|...++.+...|..+++.+|.+
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            44789999999999999999999999889999987

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=84.99  E-value=2.6  Score=38.38  Aligned_cols=44  Identities=25%  Similarity=0.301  Sum_probs=37.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ....+++|.|.|.+|...++.+...|. .+++++.++++.+.+.+
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~~~~~~~~  272 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPERAEELAE  272 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHH
Confidence            346889999999999999999999998 89999999988776543

>PRK06932 glycerate dehydrogenase; Provisional

Probab=84.87  E-value=1.8  Score=37.85  Aligned_cols=35  Identities=34%  Similarity=0.497  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .|.+|.|+|-|.+|...++.++.+|+ +|++.++..
T Consensus       146 ~gktvgIiG~G~IG~~va~~l~~fg~-~V~~~~~~~  180 (314)
T PRK06932        146 RGSTLGVFGKGCLGTEVGRLAQALGM-KVLYAEHKG  180 (314)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCc
Confidence            57899999999999999999999999 888887643

>PRK12831 putative oxidoreductase; Provisional

Probab=84.80  E-value=2  Score=39.58  Aligned_cols=37  Identities=30%  Similarity=0.319  Sum_probs=31.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      ...+..|+|+|+|+.|+.++..++..|. +|++++..+
T Consensus       137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~-~V~v~e~~~  173 (464)
T PRK12831        137 EKKGKKVAVIGSGPAGLTCAGDLAKMGY-DVTIFEALH  173 (464)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhCCC-eEEEEecCC
Confidence            4568899999999999999999999998 888887543

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=84.80  E-value=1.9  Score=41.41  Aligned_cols=42  Identities=21%  Similarity=0.306  Sum_probs=37.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      .++++|.|.|.+|...++.++..|. +++++|.++++.+.+++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~  441 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRK  441 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHh
Confidence            4689999999999999999999998 89999999999887764

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=84.63  E-value=2.4  Score=37.33  Aligned_cols=37  Identities=32%  Similarity=0.441  Sum_probs=32.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      .|.+|.|+|.|.+|...++.++..|. +|++.++++++
T Consensus       145 ~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~~  181 (330)
T PRK12480        145 KNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPNK  181 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChhH
Confidence            56789999999999999999999998 99999987654

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=84.61  E-value=2.1  Score=37.36  Aligned_cols=36  Identities=19%  Similarity=0.260  Sum_probs=32.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      .|.+|.|+|.|.+|...++.++..|+ +|+++++..+
T Consensus       135 ~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~~  170 (312)
T PRK15469        135 EDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSRK  170 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCC
Confidence            67899999999999999999999999 8988887654

>PRK06487 glycerate dehydrogenase; Provisional

Probab=84.51  E-value=2  Score=37.55  Aligned_cols=34  Identities=35%  Similarity=0.448  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~  228 (239)
                      .|.++.|+|-|.+|...++.++.+|+ +|++.++.
T Consensus       147 ~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~~  180 (317)
T PRK06487        147 EGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQLP  180 (317)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCC
Confidence            57899999999999999999999999 89988865

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=84.39  E-value=3.4  Score=34.34  Aligned_cols=34  Identities=38%  Similarity=0.466  Sum_probs=29.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEE-EEcC
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVI-GIDI  227 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv-~~~~  227 (239)
                      -.+.+++|.|-|.+|..+++++...|+ +|+ +.|+
T Consensus        29 l~~~~v~I~G~G~VG~~~a~~L~~~g~-~vv~v~D~   63 (227)
T cd01076          29 LAGARVAIQGFGNVGSHAARFLHEAGA-KVVAVSDS   63 (227)
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            367899999999999999999999999 777 5555

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=84.17  E-value=2.2  Score=37.75  Aligned_cols=36  Identities=31%  Similarity=0.332  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .+.+|+|.|+|++|..++..+..+|..+++.+|.+.
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            447899999999999999999999998999998764

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=84.15  E-value=2.4  Score=35.17  Aligned_cols=36  Identities=33%  Similarity=0.340  Sum_probs=31.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .+.+|+|.|.|++|..++..+..+|..+++.+|.+.
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            357899999999999999999999999999997654

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=84.08  E-value=3.3  Score=36.60  Aligned_cols=39  Identities=15%  Similarity=0.089  Sum_probs=34.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      -.+.++||+|+|-+|.+++..+...|+.+++++.++.++
T Consensus       172 l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~  210 (338)
T PRK00676        172 SKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT  210 (338)
T ss_pred             ccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence            468899999999999999999999998789999888644

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=84.02  E-value=2  Score=41.39  Aligned_cols=37  Identities=30%  Similarity=0.388  Sum_probs=32.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      +.+++|+|+|+|+.|+.++..+...|. +|++++.++.
T Consensus       191 ~~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~~~  227 (652)
T PRK12814        191 KSGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANEQ  227 (652)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence            457899999999999999999999998 8888887653

>PLN03139 formate dehydrogenase; Provisional

Probab=83.99  E-value=2.5  Score=38.17  Aligned_cols=35  Identities=20%  Similarity=0.252  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++.
T Consensus       198 ~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~  232 (386)
T PLN03139        198 EGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLK  232 (386)
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            67899999999999999999999999 899998764

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=83.97  E-value=3.5  Score=36.27  Aligned_cols=51  Identities=18%  Similarity=0.210  Sum_probs=39.8

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~-~~vv~~~~~~~~~~~~~~  237 (239)
                      +.....++++++||.+|+| .|..++.+++..+. ..|++++.+++.++.+++
T Consensus        72 ll~~L~i~~g~~VLDIG~G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~  123 (322)
T PRK13943         72 FMEWVGLDKGMRVLEIGGG-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR  123 (322)
T ss_pred             HHHhcCCCCCCEEEEEeCC-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH
Confidence            3355678899999999997 48888888988763 369999999987766653

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=83.96  E-value=2.1  Score=37.20  Aligned_cols=44  Identities=39%  Similarity=0.569  Sum_probs=29.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      .++|++||=.|.| .|.+++..++ +|+++|+++|.++.-.+.+++
T Consensus       159 ~~~g~~vLDvG~G-SGILaiaA~k-lGA~~v~a~DiDp~Av~~a~~  202 (295)
T PF06325_consen  159 VKPGKRVLDVGCG-SGILAIAAAK-LGAKKVVAIDIDPLAVEAARE  202 (295)
T ss_dssp             SSTTSEEEEES-T-TSHHHHHHHH-TTBSEEEEEESSCHHHHHHHH
T ss_pred             ccCCCEEEEeCCc-HHHHHHHHHH-cCCCeEEEecCCHHHHHHHHH
Confidence            6788888877652 1334443333 588899999999877666543

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=83.94  E-value=2.1  Score=39.43  Aligned_cols=36  Identities=36%  Similarity=0.477  Sum_probs=31.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      +.+.+|+|+|+|+.|+.++..+...|. +|++++..+
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~~  176 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAGH-KVTVFERAD  176 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence            457899999999999999999999998 788887653

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=83.90  E-value=4.7  Score=34.74  Aligned_cols=54  Identities=19%  Similarity=0.281  Sum_probs=42.9

Q ss_pred             hhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       182 a~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++..+....++++|.+||=+|.|- |.+++.+|+..|+ +|++++-+++..+.+++
T Consensus        60 k~~~~~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~  113 (283)
T COG2230          60 KLDLILEKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGV-TVVGVTLSEEQLAYAEK  113 (283)
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCC-EEEEeeCCHHHHHHHHH
Confidence            344567889999999999997743 4456677777798 99999999998887764

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=83.89  E-value=2.4  Score=37.50  Aligned_cols=36  Identities=33%  Similarity=0.362  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      ...+|+|.|+|++|..++..+...|..+++.+|.+.
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            447899999999999999999999999999999763

>PRK14031 glutamate dehydrogenase; Provisional

Probab=83.87  E-value=2.4  Score=38.91  Aligned_cols=34  Identities=26%  Similarity=0.331  Sum_probs=29.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI  227 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~  227 (239)
                      -.|.+|+|.|.|.+|..+++++...|+ +|+++..
T Consensus       226 l~g~rVaVQGfGNVG~~aA~~L~e~GA-kVVaVSD  259 (444)
T PRK14031        226 LKGKVCLVSGSGNVAQYTAEKVLELGG-KVVTMSD  259 (444)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            478999999999999999999999999 7776443

>PRK00811 spermidine synthase; Provisional

Probab=83.80  E-value=2.1  Score=36.86  Aligned_cols=45  Identities=18%  Similarity=0.160  Sum_probs=34.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      .+.++||++|+|. |..+..+++..+..+|++++.+++-.+.++++
T Consensus        75 ~~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~  119 (283)
T PRK00811         75 PNPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDERVVEVCRKY  119 (283)
T ss_pred             CCCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHH
Confidence            3457899998754 55566667766777999999999988888764

>PRK06141 ornithine cyclodeaminase; Validated

Probab=83.46  E-value=3.2  Score=36.18  Aligned_cols=45  Identities=20%  Similarity=0.124  Sum_probs=35.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCChhhHhhhh
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~-~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      .+...+++|+|+|..|...+..+. ..+..+|.+..+++++.+.+.
T Consensus       122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a  167 (314)
T PRK06141        122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALA  167 (314)
T ss_pred             CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence            356789999999999999876444 467779999999988866554

>PRK07340 ornithine cyclodeaminase; Validated

Probab=83.37  E-value=3.4  Score=35.92  Aligned_cols=44  Identities=18%  Similarity=0.042  Sum_probs=36.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChhhHhhhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~-~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ....+++|+|+|..|.+.+..+.. .+.+++.+.+++++|.+.+.
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a  167 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFC  167 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence            466899999999999998888864 68889999999998866544

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=83.36  E-value=3.9  Score=34.69  Aligned_cols=34  Identities=32%  Similarity=0.352  Sum_probs=29.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI  227 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~  227 (239)
                      -+|.+|+|.|-|.+|..+++++..+|+ +|+++..
T Consensus        36 l~g~~vaIqGfGnVG~~~a~~L~e~Ga-kvvaVsD   69 (254)
T cd05313          36 LKGKRVAISGSGNVAQYAAEKLLELGA-KVVTLSD   69 (254)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            468899999999999999999999999 7775543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK08618 ornithine cyclodeaminase; Validated

Probab=83.28  E-value=3.8  Score=35.95  Aligned_cols=45  Identities=16%  Similarity=0.023  Sum_probs=35.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHH-HHcCCCeEEEEcCChhhHhhhh
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGA-KAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~-~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      .+...+++|+|+|..+...+..+ ...+++.|.+++++++|.+.+.
T Consensus       124 ~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~  169 (325)
T PRK08618        124 REDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFA  169 (325)
T ss_pred             CCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHH
Confidence            34668899999999998777554 4678889999999988876543

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=83.22  E-value=2.4  Score=40.51  Aligned_cols=42  Identities=17%  Similarity=0.168  Sum_probs=37.6

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      .+.++|.|.|.+|...++.++..|. .++++|.++++.+.+++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~  441 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRK  441 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHh
Confidence            3678889999999999999999998 99999999999887754

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=83.11  E-value=2.7  Score=34.57  Aligned_cols=35  Identities=23%  Similarity=0.364  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~  228 (239)
                      ...+|+|.|+|++|...++.+...|..+++.+|.+
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            45789999999999999999999999889999877

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=83.09  E-value=1.1  Score=40.85  Aligned_cols=42  Identities=19%  Similarity=0.197  Sum_probs=34.0

Q ss_pred             hhcCCCCCCEEE----EEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          188 NTAKVEPGSIVA----VFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       188 ~~~~~~~g~~vl----I~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      ...++++|+.+|    |+|+ |.+|.+++++++..|+ .|+++...+.
T Consensus        27 ~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~-~v~~~~~~~~   73 (450)
T PRK08261         27 PLRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGY-DVVANNDGGL   73 (450)
T ss_pred             cccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCC-eeeecCcccc
Confidence            455677888887    7765 9999999999999999 8888766554

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=82.94  E-value=5.6  Score=34.36  Aligned_cols=55  Identities=20%  Similarity=0.179  Sum_probs=38.6

Q ss_pred             hcccccchhhhhhhhhcC-CCCCCEEEEEcCCH-HHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          174 LLGCGVPTGLGAVWNTAK-VEPGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       174 ~l~~~~~ta~~~~~~~~~-~~~g~~vlI~G~g~-~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      .++|+...... ++...+ --.|.+++|+|.|. +|.-.+.++...|+ +|+++.+...
T Consensus       137 ~~PcTp~ai~~-ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t~  193 (286)
T PRK14175        137 FVPCTPLGIME-ILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRSK  193 (286)
T ss_pred             CCCCcHHHHHH-HHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCch
Confidence            34554444343 334443 35799999999955 99999999999998 7777776543

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=82.74  E-value=2  Score=38.56  Aligned_cols=34  Identities=38%  Similarity=0.546  Sum_probs=29.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      -.|+|+|+|..|++++..+...|. +|.++++.+.
T Consensus        19 ~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   52 (415)
T PRK07364         19 YDVAIVGGGIVGLTLAAALKDSGL-RIALIEAQPA   52 (415)
T ss_pred             cCEEEECcCHHHHHHHHHHhcCCC-EEEEEecCCc
Confidence            458899999999998888888999 8999987654

>PRK08223 hypothetical protein; Validated

Probab=82.71  E-value=2.5  Score=36.47  Aligned_cols=36  Identities=31%  Similarity=0.261  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .+.+|+|.|+|++|..+++.+-.+|..++..+|.+.
T Consensus        26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~   61 (287)
T PRK08223         26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV   61 (287)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            457899999999999999999999999999998664

>PRK13984 putative oxidoreductase; Provisional

Probab=82.57  E-value=2.7  Score=40.08  Aligned_cols=37  Identities=24%  Similarity=0.208  Sum_probs=32.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .+.+++|+|+|+|..|+.++..++..|. +|++++..+
T Consensus       280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~  316 (604)
T PRK13984        280 EKKNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLS  316 (604)
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            4678899999999999999999999998 888887654

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=82.39  E-value=2.8  Score=35.83  Aligned_cols=36  Identities=31%  Similarity=0.459  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .+.+|+|.|.|++|..++..+-..|..+++.+|.+.
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            567899999999999999999999988999998663

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=82.31  E-value=2.9  Score=33.91  Aligned_cols=36  Identities=17%  Similarity=0.268  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      ...+|+|.|+|++|.-.+..+-..|..++..+|...
T Consensus        20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~   55 (197)
T cd01492          20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT   55 (197)
T ss_pred             HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            457899999999999999999999999999998664

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=82.17  E-value=3.7  Score=36.02  Aligned_cols=44  Identities=23%  Similarity=0.165  Sum_probs=36.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCChhhHhhhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~-~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      +...+++|+|+|..+.+.+..+. ..+++++.+..++.+|.+.+.
T Consensus       127 ~~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a  171 (326)
T TIGR02992       127 EDSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALA  171 (326)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHH
Confidence            45678999999999988887776 578889999999998866543

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=82.15  E-value=3  Score=37.89  Aligned_cols=35  Identities=29%  Similarity=0.477  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .|.++.|+|.|.+|...++.++.+|. +|++.++..
T Consensus       150 ~gktvGIiG~G~IG~~vA~~~~~fGm-~V~~~d~~~  184 (409)
T PRK11790        150 RGKTLGIVGYGHIGTQLSVLAESLGM-RVYFYDIED  184 (409)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCc
Confidence            67899999999999999999999999 999998753

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=81.87  E-value=2.9  Score=37.20  Aligned_cols=34  Identities=24%  Similarity=0.309  Sum_probs=30.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~  228 (239)
                      .+.+|||+|+ |.+|...+..+...|. .|+++++.
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r~   54 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGH-YIIASDWK   54 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEec
Confidence            5688999988 9999999999999998 88888764

>PRK08291 ectoine utilization protein EutC; Validated

Probab=81.78  E-value=4.1  Score=35.78  Aligned_cols=45  Identities=22%  Similarity=0.048  Sum_probs=35.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChhhHhhhhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~-~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +...+++|+|+|..+.+.+..+.. .+++.|.+..++++|.+.+.+
T Consensus       130 ~~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~  175 (330)
T PRK08291        130 EDASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAA  175 (330)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH
Confidence            445789999999999987777764 678899999999988776543

>PRK14030 glutamate dehydrogenase; Provisional

Probab=81.78  E-value=3.2  Score=38.14  Aligned_cols=32  Identities=38%  Similarity=0.542  Sum_probs=28.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI  225 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~  225 (239)
                      -.|.+|+|.|-|.+|..+++++..+|+ +|+++
T Consensus       226 l~g~~vaIQGfGnVG~~aA~~L~e~Ga-kvVav  257 (445)
T PRK14030        226 IKGKTVAISGFGNVAWGAATKATELGA-KVVTI  257 (445)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEE
Confidence            468999999999999999999999999 77774

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=81.77  E-value=2.7  Score=40.34  Aligned_cols=36  Identities=25%  Similarity=0.270  Sum_probs=32.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .+.+|||+|+|++|-.+++.+-..|+++++.+|...
T Consensus       337 ~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~  372 (664)
T TIGR01381       337 SQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGK  372 (664)
T ss_pred             hcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence            478999999999999999999999999999998654

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below)

Probab=81.69  E-value=1.8  Score=31.75  Aligned_cols=36  Identities=11%  Similarity=0.351  Sum_probs=30.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 026414          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (239)
Q Consensus       196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~  232 (239)
                      ++|||.|.|.++.-+++.++.+|. +++++.+++++.
T Consensus         3 kkvLIanrGeia~r~~ra~r~~Gi-~tv~v~s~~d~~   38 (110)
T PF00289_consen    3 KKVLIANRGEIAVRIIRALRELGI-ETVAVNSNPDTV   38 (110)
T ss_dssp             SEEEESS-HHHHHHHHHHHHHTTS-EEEEEEEGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCC-cceeccCchhcc
Confidence            589999999999999999999999 777777777664

CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....

>PRK08317 hypothetical protein; Provisional

Probab=81.62  E-value=4.3  Score=32.99  Aligned_cols=51  Identities=29%  Similarity=0.380  Sum_probs=39.7

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G-~~~vv~~~~~~~~~~~~~~  237 (239)
                      +.....++++++||-+|+|. |..+..+++..+ ..++++++.+++.++.+++
T Consensus        11 ~~~~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~   62 (241)
T PRK08317         11 TFELLAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKE   62 (241)
T ss_pred             HHHHcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Confidence            34667788999999998866 778888888763 3489999999987776643

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=81.58  E-value=3.1  Score=37.01  Aligned_cols=36  Identities=31%  Similarity=0.296  Sum_probs=32.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .+.+|||.|+|++|..++..+-..|..+++.+|.+.
T Consensus        27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            457999999999999999999999999999998765

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=81.25  E-value=3.2  Score=37.36  Aligned_cols=37  Identities=22%  Similarity=0.186  Sum_probs=32.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      --.|.+|.|+|.|.+|...++.++.+|+ +|++.+...
T Consensus       113 ~l~gktvGIIG~G~IG~~va~~l~a~G~-~V~~~Dp~~  149 (381)
T PRK00257        113 DLAERTYGVVGAGHVGGRLVRVLRGLGW-KVLVCDPPR  149 (381)
T ss_pred             CcCcCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCcc
Confidence            3478999999999999999999999999 999988643

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=81.22  E-value=3.4  Score=38.36  Aligned_cols=36  Identities=36%  Similarity=0.489  Sum_probs=31.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      ..+.+|+|+|+|..|+.++..++..|. .|++++..+
T Consensus       141 ~~~~~V~IIGaG~aGl~aA~~L~~~g~-~V~v~e~~~  176 (485)
T TIGR01317       141 RTGKKVAVVGSGPAGLAAADQLNRAGH-TVTVFERED  176 (485)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEecCC
Confidence            456899999999999999999999998 788887553

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PTZ00414 10 kDa heat shock protein; Provisional

Probab=81.11  E-value=4.7  Score=29.08  Aligned_cols=23  Identities=30%  Similarity=0.406  Sum_probs=19.0

Q ss_pred             EEEEEEeCCCCC----CCCCCCEEeec
Q 026414           72 AGIVESVGEGVT----EVQPGDHVIPC   94 (239)
Q Consensus        72 vG~Vv~vG~~v~----~~~~Gd~V~~~   94 (239)
                      .|.|+++|++..    .+++||+|+..
T Consensus        46 ~g~VvAVG~G~~~~~~~Vk~GD~Vl~~   72 (100)
T PTZ00414         46 EGTVVAVAAATKDWTPTVKVGDTVLLP   72 (100)
T ss_pred             eeEEEEECCCCccccceecCCCEEEEc
Confidence            499999999854    39999999854

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=81.05  E-value=2.9  Score=35.42  Aligned_cols=33  Identities=30%  Similarity=0.301  Sum_probs=27.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      -.|+|.|+|+.|++++..+...|. +|+++++..
T Consensus        26 ~DVvIVGgGpAGl~AA~~la~~G~-~V~liEk~~   58 (257)
T PRK04176         26 VDVAIVGAGPSGLTAAYYLAKAGL-KVAVFERKL   58 (257)
T ss_pred             CCEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Confidence            457888999999998888888998 888888654

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=80.99  E-value=3.3  Score=37.15  Aligned_cols=36  Identities=28%  Similarity=0.379  Sum_probs=32.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .+.+|+|+|+|++|..++..+...|..+++.+|.+.
T Consensus        40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~   75 (370)
T PRK05600         40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT   75 (370)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            457899999999999999999999998999998764

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=80.79  E-value=2.9  Score=42.21  Aligned_cols=36  Identities=25%  Similarity=0.147  Sum_probs=32.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      ..|.+|+|+|+|+-|+.|+..+...|. .|++++..+
T Consensus       304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~  339 (944)
T PRK12779        304 AVKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFH  339 (944)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCC
Confidence            358999999999999999999999999 899988654

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=80.77  E-value=3.9  Score=35.98  Aligned_cols=37  Identities=35%  Similarity=0.568  Sum_probs=33.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      -.|+++.|+|.|.+|.+.++.++..|+ +|+..++...
T Consensus       144 l~gktvGIiG~GrIG~avA~r~~~Fgm-~v~y~~~~~~  180 (324)
T COG1052         144 LRGKTLGIIGLGRIGQAVARRLKGFGM-KVLYYDRSPN  180 (324)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCCC
Confidence            358999999999999999999999998 9999998864

>PLN02206 UDP-glucuronate decarboxylase

Probab=80.70  E-value=3.4  Score=37.94  Aligned_cols=33  Identities=36%  Similarity=0.384  Sum_probs=29.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI  227 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~  227 (239)
                      ++.+|||+|+ |.+|...+..+...|. +|+++++
T Consensus       118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~  151 (442)
T PLN02206        118 KGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDN  151 (442)
T ss_pred             CCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeC
Confidence            5688999988 9999999999999998 8888864

>PLN02366 spermidine synthase

Probab=80.67  E-value=3.4  Score=36.09  Aligned_cols=45  Identities=22%  Similarity=0.116  Sum_probs=34.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      .+.++||++|.|. |..+..+++.-+..+|++++.+++-.+.++++
T Consensus        90 ~~pkrVLiIGgG~-G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~  134 (308)
T PLN02366         90 PNPKKVLVVGGGD-GGVLREIARHSSVEQIDICEIDKMVIDVSKKF  134 (308)
T ss_pred             CCCCeEEEEcCCc-cHHHHHHHhCCCCCeEEEEECCHHHHHHHHHh
Confidence            4568999998765 45566777777767899999998877777664

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=80.56  E-value=3.5  Score=37.83  Aligned_cols=36  Identities=33%  Similarity=0.348  Sum_probs=31.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      ..+.+|+|+|+|..|+.++..++..|. +|++++..+
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~~  166 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKAGH-SVTVFEALH  166 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            456899999999999999999999998 888887653

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PLN02572 UDP-sulfoquinovose synthase

Probab=80.54  E-value=3.1  Score=38.10  Aligned_cols=33  Identities=30%  Similarity=0.260  Sum_probs=28.5

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc
Q 026414          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID  226 (239)
Q Consensus       193 ~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~  226 (239)
                      .++.+|||+|+ |.+|...++.+...|. .|++++
T Consensus        45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d   78 (442)
T PLN02572         45 SKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVD   78 (442)
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEe
Confidence            35578999988 9999999999999998 888876

>TIGR00292 thiazole biosynthesis enzyme

Probab=80.41  E-value=3  Score=35.25  Aligned_cols=33  Identities=27%  Similarity=0.288  Sum_probs=28.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      -.|+|+|+|+.|++++..+...|. +|++++++.
T Consensus        22 ~DVvIVGgGpAGL~aA~~la~~G~-~V~vlEk~~   54 (254)
T TIGR00292        22 SDVIIVGAGPSGLTAAYYLAKNGL-KVCVLERSL   54 (254)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            347888999999999988888998 888888764

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=80.38  E-value=3.7  Score=36.16  Aligned_cols=37  Identities=35%  Similarity=0.372  Sum_probs=31.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .+.+.+|+|+|+|..|+.++..+...|. +++++++.+
T Consensus        15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~   51 (352)
T PRK12770         15 PPTGKKVAIIGAGPAGLAAAGYLACLGY-EVHVYDKLP   51 (352)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            4567899999999999999999999998 888888754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	239
4dl9_A	396	Crystal Structure Of S-nitrosoglutathione Reductase		1e-122
3uko_A	378	Crystal Structure Of S-Nitrosoglutathione Reductase		1e-119
1mc5_A	374	Ternary Complex Of Human Glutathione-Dependent Form		1e-80
3qj5_A	374	S-Nitrosoglutathione Reductase (Gsnor) In Complex W		1e-80
1teh_A	373	Structure Of Human Liver Chichi Alcohol Dehydrogena		1e-80
2fzw_A	373	Structure Of The Binary Complex Of The E67l Mutant		1e-79
3cos_A	381	Crystal Structure Of Human Class Ii Alcohol Dehydro		1e-72
1cdo_A	374	Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Co		1e-69
1e3l_A	376	P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase		5e-65
1e3e_A	376	Mouse Class Ii Alcohol Dehydrogenase Complex With N		9e-64
1hdy_A	374	Three-Dimensional Structures Of Three Human Alcohol		2e-63
1p0c_A	373	Crystal Structure Of The Nadp(H)-Dependent Vertebra		4e-63
1hdx_A	374	Three-Dimensional Structures Of Three Human Alcohol		1e-62
1htb_A	374	Crystallization Of Human Beta3 Alcohol Dehydrogenas		1e-62
1hdz_A	374	Three-Dimensional Structures Of Three Human Alcohol		3e-62
1qlh_A	374	Horse Liver Alcohol Dehydrogenase Complexed To Nad		4e-62
1agn_A	373	X-Ray Structure Of Human Sigma Alcohol Dehydrogenas		5e-62
1ju9_A	374	Horse Liver Alcohol Dehydrogenase Val292ser Mutant		5e-62
6adh_A	374	Structure Of Triclinic Ternary Complex Of Horse Liv		6e-62
3oq6_A	374	Horse Liver Alcohol Dehydrogenase A317c Mutant Comp		6e-62
1n8k_A	374	Horse Liver Alcohol Dehydrogenase Val292thr Mutant		6e-62
1axe_A	374	Crystal Structure Of The Active-Site Mutant Phe93->		9e-62
1d1t_A	373	Mutant Of Human Sigma Alcohol Dehydrogenase With Le		1e-61
1axg_A	374	Crystal Structure Of The Val203->ala Mutant Of Live		2e-61
1mgo_A	374	Horse Liver Alcohol Dehydrogenase Phe93ala Mutant L		2e-61
1qv6_A	374	Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG		2e-61
1a71_A	374	Ternary Complex Of An Active Site Double Mutant Of		3e-61
1ee2_B	373	The Structure Of Steroid-Active Alcohol Dehydrogena		6e-61
1ht0_A	374	Human Gamma-2 Alcohol Dehydrogense Length = 374		1e-60
1ee2_A	373	The Structure Of Steroid-Active Alcohol Dehydrogena		2e-60
1hso_A	374	Human Alpha Alcohol Dehydrogenase (Adh1a) Length =		2e-60
1f8f_A	371	Crystal Structure Of Benzyl Alcohol Dehydrogenase F		2e-25
3two_A	348	The Crystal Structure Of Cad From Helicobacter Pylo		5e-16
1rjw_A	339	Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd		5e-15
3pii_A	339	Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog		8e-15
2h6e_A	344	Crystal Structure Of The D-Arabinose Dehydrogenase		8e-15
1llu_A	342	The Ternary Complex Of Pseudomonas Aeruginosa Alcoh		1e-14
3meq_A	365	Crystal Structure Of Alcohol Dehydrogenase From Bru		2e-14
3s1l_A	340	Crystal Structure Of Apo-Form Furx Length = 340		9e-14
4ilk_A	359	Crystal Structure Of Short Chain Alcohol Dehydrogen		1e-13
1h2b_A	359	Crystal Structure Of The Alcohol Dehydrogenase From		9e-13
2hcy_A	347	Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevi		1e-12
1uuf_A	369	Crystal Structure Of A Zinc-Type Alcohol Dehydrogen		1e-12
2eih_A	343	Crystal Structure Of Nad-Dependent Alcohol Dehydrog		2e-11
1e3j_A	352	Ketose Reductase (Sorbitol Dehydrogenase) From Silv		8e-11
2xaa_A	345	Alcohol Dehydrogenase Adh-'a' From Rhodococcus Rube		2e-10
4eex_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		3e-10
4eez_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		4e-10
2eer_A	347	Structural Study Of Project Id St2577 From Sulfolob		7e-10
2dq4_A	343	Crystal Structure Of Threonine 3-Dehydrogenase Leng		8e-10
1vj0_A	380	Crystal Structure Of Alcohol Dehydrogenase (Tm0436)		1e-09
3gfb_A	350	L-Threonine Dehydrogenase (Tktdh) From The Hyperthe		6e-09
1r37_A	347	Alcohol Dehydrogenase From Sulfolobus Solfataricus		1e-08
1nto_A	347	N249y Mutant Of Alcohol Dehydrogenase From The Arch		1e-08
1jvb_A	347	Alcohol Dehydrogenase From The Archaeon Sulfolobus		1e-08
3i4c_A	347	Crystal Structure Of Sulfolobus Solfataricus Adh(Ss		1e-08
4a2c_A	346	Crystal Structure Of Galactitol-1-Phosphate Dehydro		4e-08
2dfv_A	347	Hyperthermophilic Threonine Dehydrogenase From Pyro		4e-08
2d8a_A	348	Crystal Structure Of Ph0655 From Pyrococcus Horikos		4e-08
4ej6_A	370	Crystal Structure Of A Putative Zinc-Binding Dehydr		4e-08
1pl7_A	356	Human Sorbitol Dehydrogenase (Apo) Length = 356		6e-08
1yqd_A	366	Sinapyl Alcohol Dehydrogenase Complexed With Nadp+		8e-08
1pl6_A	356	Human SdhNADHINHIBITOR COMPLEX Length = 356		1e-07
3qe3_A	355	Sheep Liver Sorbitol Dehydrogenase Length = 355		2e-07
2cd9_A	366	Sulfolobus Solfataricus Glucose Dehydrogenase 1 - A		2e-07
2cdb_A	366	Sulfolobus Solfataricus Glucose Dehydrogenase 1 In		7e-07
1kol_A	398	Crystal Structure Of Formaldehyde Dehydrogenase Len		1e-06
1qor_A	327	Crystal Structure Of Escherichia Coli Quinone Oxido		1e-05
1jqb_A	351	Alcohol Dehydrogenase From Clostridium Beijerinckii		3e-05
3jyl_A	325	Crystal Structures Of Pseudomonas Syringae Pv. Toma		4e-05
3m6i_A	363	L-Arabinitol 4-Dehydrogenase Length = 363		4e-05
3fpl_A	351	Chimera Of Alcohol Dehydrogenase By Exchange Of The		4e-05
1ped_A	351	Bacterial Secondary Alcohol Dehydrogenase (Apo-Form		6e-05
2b5w_A	357	Crystal Structure Of D38c Glucose Dehydrogenase Mut		8e-05
2b83_A	351	A Single Amino Acid Substitution In The Clostridium		2e-04
3ftn_A	352	Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDRO		2e-04
2dph_A	398	Crystal Structure Of Formaldehyde Dismutase Length		3e-04
1wly_A	333	Crystal Structure Of 2-haloacrylate Reductase Lengt		3e-04
1ykf_A	352	Nadp-Dependent Alcohol Dehydrogenase From Thermoana		3e-04
2nvb_A	352	Contribution Of Pro275 To The Thermostability Of Th		3e-04
3fsr_A	352	Chimera Of Alcohol Dehydrogenase By Exchange Of The		4e-04
3slk_A	795	Structure Of Ketoreductase And Enoylreductase Didom		8e-04
3gaz_A	343	Crystal Structure Of An Alcohol Dehydrogenase Super		9e-04

>pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ Length = 396

Iteration: 1
 Score =  434 bits (1116), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/233 (89%), Positives = 216/233 (92%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           +T+GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVR+K+L+TALCHTDAYTWSGKDPEG
Sbjct: 19  ATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKVLYTALCHTDAYTWSGKDPEG 78
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           LFPC+LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR ATG
Sbjct: 79  LFPCVLGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATG 138
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP APL+KVCLLGCGVPT
Sbjct: 139 VGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLEKVCLLGCGVPT 198
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           GLGAVWNTAKVEPGSIVAVFGLGTV             SR+IGIDID KKFDR
Sbjct: 199 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDR 251

>pdb|3UKO|A Chain A, Crystal Structure Of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex With Nadh Length = 378

Iteration: 1
 Score =  422 bits (1085), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 203/232 (87%), Positives = 213/232 (91%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           +T+GQVITCKAAVA+EPNKPLVIEDVQVAPPQAGEVRIKIL+TALCHTDAYTWSGKDPEG
Sbjct: 1   ATQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEG 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           LFPCILGHEAAGIVESVGEGVTEVQ GDHVIPCYQAECRECKFCKSGKTNLCGKVR ATG
Sbjct: 61  LFPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATG 120
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G+MMNDRKSRFS+NGKPIYHFMGTSTFSQYTVVHDVSVAKIDP APLDKVCLLGCGVPT
Sbjct: 121 VGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPT 180
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFD 233
           GLGAVWNTAKVEPGS VA+FGLGTV             SR+IGIDID KK++
Sbjct: 181 GLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYE 232

>pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With S-(Hydroxymethyl)glutathione And Nadh Length = 374

Iteration: 1
 Score =  295 bits (756), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 149/229 (65%), Positives = 173/229 (75%), Gaps = 1/229 (0%)
Query: 6   QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
           +VI CKAAVAWE  KPL IE+++VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP 
Sbjct: 4   EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 63
Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
           ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +
Sbjct: 64  ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 122
Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
           M D  SRF+  GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct: 123 MPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 182
Query: 186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
             NTAK+EPGS+ AVFGLG V             SR+IG+DI+  KF R
Sbjct: 183 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFAR 231

>pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With N6022 Length = 374

Iteration: 1
 Score =  295 bits (756), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 149/229 (65%), Positives = 173/229 (75%), Gaps = 1/229 (0%)
Query: 6   QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
           +VI CKAAVAWE  KPL IE+++VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP 
Sbjct: 4   EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 63
Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
           ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +
Sbjct: 64  ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 122
Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
           M D  SRF+  GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct: 123 MPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 182
Query: 186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
             NTAK+EPGS+ AVFGLG V             SR+IG+DI+  KF R
Sbjct: 183 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFAR 231

>pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A Glutathione- Dependent Formaldehyde Dehydrogenase) Length = 373

Iteration: 1
 Score =  295 bits (755), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 149/229 (65%), Positives = 173/229 (75%), Gaps = 1/229 (0%)
Query: 6   QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
           +VI CKAAVAWE  KPL IE+++VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP 
Sbjct: 3   EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 62
Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
           ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +
Sbjct: 63  ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 121
Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
           M D  SRF+  GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct: 122 MPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 181
Query: 186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
             NTAK+EPGS+ AVFGLG V             SR+IG+DI+  KF R
Sbjct: 182 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFAR 230

>pdb|2FZW|A Chain A, Structure Of The Binary Complex Of The E67l Mutant Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With Nad(H) Length = 373

Iteration: 1
 Score =  292 bits (748), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 148/229 (64%), Positives = 172/229 (75%), Gaps = 1/229 (0%)
Query: 6   QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
           +VI CKAAVAWE  KPL IE+++VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP 
Sbjct: 3   EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 62
Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
           ILGH  AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +
Sbjct: 63  ILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 121
Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
           M D  SRF+  GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct: 122 MPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 181
Query: 186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
             NTAK+EPGS+ AVFGLG V             SR+IG+DI+  KF R
Sbjct: 182 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFAR 230

>pdb|3COS|A Chain A, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase (Adh4) In Complex With Nad And Zn Length = 381

Iteration: 1
 Score =  269 bits (687), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 137/235 (58%), Positives = 164/235 (69%), Gaps = 3/235 (1%)
Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M T+G+VI CKAA+AWE  KPL IE+V+VAPP+A EVRI+I+ T+LCHTDA     K   
Sbjct: 2   MGTKGKVIKCKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSKFEG 61
Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKV---R 117
             FP I+GHEAAGIVES+G GVT V+PGD VIP Y   CR+CKFC S  TNLCGK+   +
Sbjct: 62  LAFPVIVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNLK 121
Query: 118 GATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGC 177
                  +M D+ SRF+  GKP+YHF GTSTFSQYTVV D+++AKID  A L++VCLLGC
Sbjct: 122 SPASDQQLMEDKTSRFTCKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLLGC 181
Query: 178 GVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKF 232
           G  TG GA  N AKV PGS  AVFGLG V             SR+IGIDI+ +KF
Sbjct: 182 GFSTGYGAAINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKF 236

>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed With Nicotinamide Adenine Dinucleotide (Nad), And Zinc Length = 374

Iteration: 1
 Score =  259 bits (661), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 133/235 (56%), Positives = 170/235 (72%), Gaps = 5/235 (2%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAY-TWSGKDPE 60
           +T G+VI CKAAVAWE NKPLVIE+++V  P A E+RIKI+ T +CHTD Y  + GK  +
Sbjct: 1   ATVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKD 60
Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRG-A 119
           G FP +LGHE AGIVESVG GVTE QPG+ VIP + ++C EC+FC+S KTN C  V+G A
Sbjct: 61  G-FPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQC--VKGWA 117
Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 179
             +  +M+ +++RF+  G+ +  F+GTSTFSQYTVV+ ++VAKIDP APLD VCLLGCGV
Sbjct: 118 NESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGV 177
Query: 180 PTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
            TG GA  NTAKVEPGS  AVFGLG V              R+I +D++P KF++
Sbjct: 178 STGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEK 232

>pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  243 bits (621), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 122/237 (51%), Positives = 162/237 (68%), Gaps = 8/237 (3%)
Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-- 60
           T+G+VI CKAA+AW+   PL IE+++V+PP+A EVRI+++ T +CHTD    +  DP+  
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCHTDI---NATDPKKK 58
Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
            LFP +LGHE AGIVESVG GVT  +PGD VIP +  +C+ CK C S  TNLCGK+R   
Sbjct: 59  ALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFK 118
Query: 121 GAGV---MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGC 177
              +   +M DR SRF+  G+ IYHFMG S+FSQYTVV + ++A++D +A L++VCL+GC
Sbjct: 119 YPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGC 178
Query: 178 GVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G  +G GA  NTAKV PGS  AVFGLG V             SR+I IDI+ +KF +
Sbjct: 179 GFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPK 235

>pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  239 bits (610), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 121/237 (51%), Positives = 161/237 (67%), Gaps = 8/237 (3%)
Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-- 60
           T+G+VI CKAA+AW+   PL IE+++V+PP+A EVRI+++ T +C TD    +  DP+  
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDI---NATDPKKK 58
Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
            LFP +LGHE AGIVESVG GVT  +PGD VIP +  +C+ CK C S  TNLCGK+R   
Sbjct: 59  ALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFK 118
Query: 121 GAGV---MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGC 177
              +   +M DR SRF+  G+ IYHFMG S+FSQYTVV + ++A++D +A L++VCL+GC
Sbjct: 119 YPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGC 178
Query: 178 GVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G  +G GA  NTAKV PGS  AVFGLG V             SR+I IDI+ +KF +
Sbjct: 179 GFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPK 235

>pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  238 bits (608), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 126/233 (54%), Positives = 156/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IEDV+VAPP+A EVRIK++   +CHTD +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICHTDDHVVSGNLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P ILGHEAAGIVESVGEGVT V+PGD VIP +  +C +C+ CK+ ++N C K      
Sbjct: 61  L-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G +  D   RF+  GKPI+HF+GTSTFSQYTVV + +VAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTL-QDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+  N AKV PGS  AVFGLG V             +R+I +DI+  KF +
Sbjct: 179 GYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAK 231

>pdb|1P0C|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Vertebrate Alcohol Dehydrogenase (Adh8) Length = 373

Iteration: 1
 Score =  237 bits (604), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 125/234 (53%), Positives = 154/234 (65%), Gaps = 3/234 (1%)
Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M T G+ ITCKAAVAWEP+KPL +E + VAPP+A EVRIKIL + +C +D+       P 
Sbjct: 1   MCTAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPS 60
Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
             FP ILGHEA G+VES+G GVT V+PGD VIP +  +C  C+ CKS  +N C K     
Sbjct: 61  K-FPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGA 119
Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
             G +M D  SRF+  GKPIY+ MGTSTF++YTVV D++VAKIDP+APL+  CL+GCG  
Sbjct: 120 KTG-LMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLES-CLIGCGFA 177
Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           TG GA  NTAKV PGS  AVFGLG V             SR+IG+     KF +
Sbjct: 178 TGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPK 231

>pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  235 bits (600), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 125/233 (53%), Positives = 155/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IEDV+VAPP+A EVRIK++   +C TD +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P ILGHEAAGIVESVGEGVT V+PGD VIP +  +C +C+ CK+ ++N C K      
Sbjct: 61  L-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G +  D   RF+  GKPI+HF+GTSTFSQYTVV + +VAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTL-QDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+  N AKV PGS  AVFGLG V             +R+I +DI+  KF +
Sbjct: 179 GYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAK 231

>pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10 MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+ And 1 Mm 4-Iodopyrazole At 25 C Length = 374

Iteration: 1
 Score =  235 bits (600), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 125/233 (53%), Positives = 155/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IEDV+VAPP+A EVRIK++   +C TD +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P ILGHEAAGIVESVGEGVT V+PGD VIP +  +C +C+ CK+ ++N C K      
Sbjct: 61  L-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G +  D   RF+  GKPI+HF+GTSTFSQYTVV + +VAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTL-QDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+  N AKV PGS  AVFGLG V             +R+I +DI+  KF +
Sbjct: 179 GYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAK 231

>pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  234 bits (597), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 125/233 (53%), Positives = 155/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IEDV+VAPP+A EVRIK++   +C TD +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICGTDDHVVSGNLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P ILGHEAAGIVESVGEGVT V+PGD VIP +  +C +C+ CK+ ++N C K      
Sbjct: 61  L-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G +  D   RF+  GKPI+HF+GTSTFSQYTVV + +VAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTL-QDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+  N AKV PGS  AVFGLG V             +R+I +DI+  KF +
Sbjct: 179 GYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAK 231

>pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nad Double Mutant Of Gly 293 Ala And Pro 295 Thr Length = 374

Iteration: 1
 Score =  234 bits (597), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 124/233 (53%), Positives = 155/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+    AKV  GS  AVFGLG V             +R+IG+DI+  KF +
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAK 231

>pdb|1AGN|A Chain A, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase Length = 373

Iteration: 1
 Score =  233 bits (595), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 122/232 (52%), Positives = 154/232 (66%), Gaps = 3/232 (1%)
Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
           T G+VI CKAAV WE  +P  IE+++VAPP+  EVRIKIL T +C TD +   G      
Sbjct: 2   TAGKVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIKGTMVSK- 60
Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
           FP I+GHEA GIVES+GEGVT V+PGD VIP +  +CREC  C++   NLC +    TG 
Sbjct: 61  FPVIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIR-SDITGR 119
Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG 182
           GV+  D  +RF+  GKP++HFM TSTF++YTVV + SVAKID  AP +KVCL+GCG  TG
Sbjct: 120 GVLA-DGTTRFTCKGKPVHHFMNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTG 178
Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
            GA   T KV+PGS   VFGLG V             SR+IGID++  KF++
Sbjct: 179 YGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEK 230

>pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val292ser Mutant Length = 374

Iteration: 1
 Score =  233 bits (595), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 124/233 (53%), Positives = 155/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+    AKV  GS  AVFGLG V             +R+IG+DI+  KF +
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAK 231

>pdb|6ADH|A Chain A, Structure Of Triclinic Ternary Complex Of Horse Liver Alcohol Dehydrogenase At 2.9 Angstroms Resolution Length = 374

Iteration: 1
 Score =  233 bits (595), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 124/233 (53%), Positives = 155/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+    AKV  GS  AVFGLG V             +R+IG+DI+  KF +
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAK 231

>pdb|3OQ6|A Chain A, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  233 bits (595), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 124/233 (53%), Positives = 155/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+    AKV  GS  AVFGLG V             +R+IG+DI+  KF +
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAK 231

>pdb|1N8K|A Chain A, Horse Liver Alcohol Dehydrogenase Val292thr Mutant Complexed To Nad+ And Pyrazole Length = 374

Iteration: 1
 Score =  233 bits (595), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 124/233 (53%), Positives = 155/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+    AKV  GS  AVFGLG V             +R+IG+DI+  KF +
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAK 231

>pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of Horse Liver Alcohol Dehydrogenase In Complex With Nad And Inhibitor Trifluoroethanol Length = 374

Iteration: 1
 Score =  233 bits (593), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 124/233 (53%), Positives = 155/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+    AKV  GS  AVFGLG V             +R+IG+DI+  KF +
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAK 231

>pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine At Position 141 Length = 373

Iteration: 1
 Score =  232 bits (592), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 121/232 (52%), Positives = 154/232 (66%), Gaps = 3/232 (1%)
Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
           T G+VI CKAAV WE  +P  IE+++VAPP+  EVRIKIL T +C TD +   G      
Sbjct: 2   TAGKVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIKGTMVSK- 60
Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
           FP I+GHEA GIVES+GEGVT V+PGD VIP +  +CREC  C++   NLC +    TG 
Sbjct: 61  FPVIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIR-SDITGR 119
Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG 182
           GV+  D  +RF+  GKP++HF+ TSTF++YTVV + SVAKID  AP +KVCL+GCG  TG
Sbjct: 120 GVLA-DGTTRFTCKGKPVHHFLNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTG 178
Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
            GA   T KV+PGS   VFGLG V             SR+IGID++  KF++
Sbjct: 179 YGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEK 230

>pdb|1AXG|A Chain A, Crystal Structure Of The Val203->ala Mutant Of Liver Alcohol Dehydrogenase Complexed With Cofactor Nad And Inhibitor Trifluoroethanol Solved To 2.5 Angstrom Resolution Length = 374

Iteration: 1
 Score =  232 bits (591), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 123/233 (52%), Positives = 154/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+    AKV  GS  AVFGLG               +R+IG+DI+  KF +
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAK 231

>pdb|1MGO|A Chain A, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant Length = 374

Iteration: 1
 Score =  231 bits (590), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 124/233 (53%), Positives = 154/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP    +C +C+ CK  + N C K   +  
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLATPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+    AKV  GS  AVFGLG V             +R+IG+DI+  KF +
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAK 231

>pdb|1QV6|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  231 bits (590), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 123/233 (52%), Positives = 154/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D    SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDQVVSGTLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+    AKV  GS  AVFGLG V             +R+IG+DI+  +F +
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDRFAK 231

>pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With Nad And Trifluoroethanol Length = 374

Iteration: 1
 Score =  231 bits (588), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 123/233 (52%), Positives = 154/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+    AKV  GS  AVFGLG               +R+IG+DI+  KF +
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAK 231

>pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  230 bits (586), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 122/233 (52%), Positives = 154/233 (66%), Gaps = 3/233 (1%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++   +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEQKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDDHVVSGTLVAP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C  CK  + NLC  ++  + 
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLC--LKNLSM 117
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
               M D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 118 PRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCGFST 177
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+    AKV  GS  AVFGLG V             +R+IG+DI+  KF +
Sbjct: 178 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAK 230

>pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense Length = 374

Iteration: 1
 Score =  229 bits (584), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 121/233 (51%), Positives = 154/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++   +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDEHVVSGNLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P ILGHEAAGIVESVGEGVT V+PGD VIP +  +C +C+ CK+ ++N C K      
Sbjct: 61  L-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRICKNPESNYCLKNDLGNP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G +  D   RF+ +GKPI+HF+G STFSQYTVV + +VAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTL-QDGTRRFTCSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+    AKV PGS  AVFGLG V             +R+I +DI+  KF +
Sbjct: 179 GYGSAVKVAKVTPGSTCAVFGLGGVGLSVVMGCKAAGAARIIAVDINKDKFAK 231

>pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  228 bits (582), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 121/232 (52%), Positives = 153/232 (65%), Gaps = 3/232 (1%)
Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
           T G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++   +C +D +  SG     L
Sbjct: 2   TAGKVIKCKAAVLWEQKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDDHVVSGTLVAPL 61
Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
            P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C  CK  + NLC  ++  +  
Sbjct: 62  -PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLC--LKNLSMP 118
Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG 182
              M D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  TG
Sbjct: 119 RGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCGFSTG 178
Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
            G+    AKV  GS  AVFGLG V             +R+IG+DI+  KF +
Sbjct: 179 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAK 230

>pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a) Length = 374

Iteration: 1
 Score =  228 bits (582), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 123/233 (52%), Positives = 154/233 (66%), Gaps = 2/233 (0%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++   +C TD +  SG     
Sbjct: 1   STAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAVGICGTDDHVVSGTMVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P ILGHEAAGIVESVGEGVT V+PGD VIP    +C +C+ CK+ ++N C K   +  
Sbjct: 61  L-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLAIPQCGKCRICKNPESNYCLKNDVSNP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G +  D  SRF+   KPI+HF+G STFSQYTVV + +VAKID  +PL+KVCL+GCG  T
Sbjct: 120 QGTL-QDGTSRFTCRRKPIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           G G+  N AKV PGS  AVFGLG V             +R+I +DI+  KF +
Sbjct: 179 GYGSAVNVAKVTPGSTCAVFGLGGVGLSAIMGCKAAGAARIIAVDINKDKFAK 231

>pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From Acinetobacter Calcoaceticus Length = 371

Iteration: 1
 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 105/214 (49%), Gaps = 9/214 (4%)
Query: 24  IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT 83
           ++ +++  PQ  EV +K++ T +CHTD      K P  L P +LGHE +GI+E++G  VT
Sbjct: 21  LQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVPL-PAVLGHEGSGIIEAIGPNVT 79
Query: 84  EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSI----NGKP 139
           E+Q GDHV+  Y   C +C  C +G    C +  G   +G    D +   ++     G  
Sbjct: 80  ELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGA---DSEGNHALCTHDQGVV 135
Query: 140 IYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVA 199
             HF   S+F+ Y +  + +  K+    P++ +  LGCG+ TG GA  N  KV P S   
Sbjct: 136 NDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFV 195
Query: 200 VFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFD 233
            +G G V             S +I +DI   + +
Sbjct: 196 TWGAGAVGLSALLAAKVCGASIIIAVDIVESRLE 229

>pdb|3TWO|A Chain A, The Crystal Structure Of Cad From Helicobacter Pylori Complexed With Nadp(H) Length = 348

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 86/170 (50%), Gaps = 15/170 (8%)
Query: 36  EVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV-IPC 94
           +V I IL+  +CH+D ++   +  EG++P I GHE AGI++ VG+GV + + GD V + C
Sbjct: 31  DVLIDILYAGICHSDIHSAYSEWKEGIYPMIPGHEIAGIIKEVGKGVKKFKIGDVVGVGC 90
Query: 95  YQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTV 154
           +   C+ CK CK  +   C KV       V   D    F  N +P  H  G   +S   V
Sbjct: 91  FVNSCKACKPCKEHQEQFCTKV-------VFTYDCLDSFHDN-EP--HMGG---YSNNIV 137
Query: 155 VHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLG 204
           V +  V  +D  APL+KV  L C   T    +   +KV  G+ V V G G
Sbjct: 138 VDENYVISVDKNAPLEKVAPLLCAGITTYSPL-KFSKVTKGTKVGVAGFG 186

>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 102/225 (45%), Gaps = 26/225 (11%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGH 69
           KAAV  +  +PL I++V+      GEV ++I    +CHTD +   G  P +   P I GH
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61
Query: 70  EAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
           E  GIVE VG GVT ++ GD V IP   + C  C +C SG+  LC             + 
Sbjct: 62  EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLC------------EHQ 109
Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
           + + +S++G           +++Y       V KI      ++   + C   T   A+  
Sbjct: 110 KNAGYSVDG----------GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKV 159
Query: 189 TAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFD 233
           T   +PG  VA++G+G +             + V+ +DI  +K +
Sbjct: 160 TG-AKPGEWVAIYGIGGLGHVAVQYAKAMGLN-VVAVDIGDEKLE 202

>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339

Iteration: 1
 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 92/196 (46%), Gaps = 25/196 (12%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGH 69
           KAAV  +  +PL I++V+      GEV ++I    +CHTD +   G  P +   P I GH
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61
Query: 70  EAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
           E  GIVE VG GVT ++ GD V IP   + C  C +C SG+  LC             + 
Sbjct: 62  EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLC------------EHQ 109
Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
           + + +S++G           +++Y       V KI      ++   + C   T   A+  
Sbjct: 110 KNAGYSVDG----------GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKV 159
Query: 189 TAKVEPGSIVAVFGLG 204
           T   +PG  VA++G+G
Sbjct: 160 TG-AKPGEWVAIYGIG 174

>pdb|2H6E|A Chain A, Crystal Structure Of The D-Arabinose Dehydrogenase From Sulfolobus Solfataricus Length = 344

Iteration: 1
 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
Query: 7   VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF--P 64
           ++  KAA+  + ++PL IEDV +  PQ  EV I+I    +C TD   W G + +  F  P
Sbjct: 1   MVKSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLP 60
Query: 65  CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC 113
            ILGHE AG +  VGE + +V+ GD+V+         C++C+ GK N+C
Sbjct: 61  IILGHENAGTIVEVGE-LAKVKKGDNVVVYATWGDLTCRYCREGKFNIC 108

>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Its Coenzyme And Weak Substrate Length = 342

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 99/227 (43%), Gaps = 26/227 (11%)
Query: 9   TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCIL 67
           T KAAV      PL IE+V+V  P  G+V +KI  + +CHTD +   G  P +   P I 
Sbjct: 6   TMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIP 65
Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE  G V +VG GVT V+ GD V IP     C  C+ C +G   LC             
Sbjct: 66  GHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLC------------E 113
Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
           + + + +S+NG    + +    +    +  +V  A+I P        +L  GV    G  
Sbjct: 114 SQQNTGYSVNGGYAEYVLADPNYVG-ILPKNVEFAEIAP--------ILCAGVTVYKGLK 164
Query: 187 WNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFD 233
              A+  PG  VA+ G+G +               V  IDID  K +
Sbjct: 165 QTNAR--PGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLE 208

>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella Mel Length = 365

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 98/230 (42%), Gaps = 32/230 (13%)
Query: 9   TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCIL 67
           T KAAV     KPL I++V +  P  G++++ I  + +CHTD +   G  P +   P I 
Sbjct: 25  TMKAAVVRAFGKPLTIDEVPIPQPGPGQIQVAIQASGVCHTDLHAAEGDWPVKPNPPFIP 84
Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE  G V +VG GV  V+ GD V IP     C  C+ C  G   LC +           
Sbjct: 85  GHEGVGFVSAVGSGVKHVKEGDRVGIPWLYTACGHCRHCLGGWETLCEE----------- 133
Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
               + +S+NG           F++Y V     V  +      +++  + C   T    V
Sbjct: 134 -QLNTGYSVNGG----------FAEYVVADPNFVGHLPKNIDFNEIAPVLCAGVT----V 178
Query: 187 WNTAKV---EPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFD 233
           +   KV   +PG  V + G+G +             + V  +DID +K D
Sbjct: 179 YKGLKVTDTKPGDWVVISGIGGLGHMAVQYARAMGLN-VAAVDIDDRKLD 227

>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx Length = 340

Iteration: 1
 Score = 73.6 bits (179), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 97/228 (42%), Gaps = 32/228 (14%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGH 69
           KAAV      PL I++V V  P  G+V++KI  + +CHTD +   G  P +   P I GH
Sbjct: 4   KAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGH 63
Query: 70  EAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
           E  G V +VG GV+ V+ GD V +P   + C  C+ C  G   LC K             
Sbjct: 64  EGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEK------------Q 111
Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
           + + +S+NG           + +Y V     V  +  +    ++  + C   T    V+ 
Sbjct: 112 QNTGYSVNGG----------YGEYVVADPNYVGLLPDKVGFVEIAPILCAGVT----VYK 157
Query: 189 TAKV---EPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFD 233
             KV    PG  V + G+G +              RV  +DID  K +
Sbjct: 158 GLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLN 204

>pdb|4ILK|A Chain A, Crystal Structure Of Short Chain Alcohol Dehydrogenase (rspb) From E. Coli Cft073 (efi Target Efi-506413) Complexed With Cofactor Nadh Length = 359

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           K+ +  +PN+  +IE  ++  P AGEVR+K+    +C +D++ + G +P   +P ++GHE
Sbjct: 22  KSILIEKPNQLSIIER-EIPTPSAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHE 80
Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC 113
             G++++VGEGV   + G+ V       C  C  C  GK N+C
Sbjct: 81  FFGVIDAVGEGVESARVGERVAVDPVVSCGHCYPCSIGKPNVC 123

>pdb|1H2B|A Chain A, Crystal Structure Of The Alcohol Dehydrogenase From The Hyperthermophilic Archaeon Aeropyrum Pernix At 1.65a Resolution Length = 359

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 97/229 (42%), Gaps = 26/229 (11%)
Query: 10  CKAAVAWEPNKPLVIEDVQVAPPQAG--EVRIKILFTALCHTDAYTWSGKDPEGL---FP 64
            KAA   E NKPL IEDV   P   G  +V ++I    +CHTD +   G   E L    P
Sbjct: 16  LKAARLHEYNKPLRIEDVDY-PRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLP 74
Query: 65  CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
             LGHE  G +E V EGV  ++ GD VI         C  C++G+   C           
Sbjct: 75  YTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCE---------- 124
Query: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 184
             N      +I+G     FM TS  S   +  D+S  K+   APL    +      T   
Sbjct: 125 --NLEFPGLNIDGG-FAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGI------TAYR 175
Query: 185 AVWNTAK-VEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKF 232
           AV   A+ + PG+ VA+ G+G +             + VI +D+  +K 
Sbjct: 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKL 224

>pdb|2HCY|A Chain A, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae Fermentative Enzyme Length = 347

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 90/220 (40%), Gaps = 25/220 (11%)
Query: 9   TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL-FPCIL 67
           T K  + +E +  L  +D+ V  P+A E+ I + ++ +CHTD + W G  P  +  P + 
Sbjct: 5   TQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVG 64
Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE AG+V  +GE V   + GD+  I      C  C++C+ G  + C             
Sbjct: 65  GHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNC------------- 111
Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
                   ++G     +    +F QY     V  A I     L +V  + C   T   A+
Sbjct: 112 ----PHADLSG-----YTHDGSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKAL 162
Query: 187 WNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGID 226
             +A +  G  VA+ G                  RV+GID
Sbjct: 163 -KSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGID 201

>pdb|1UUF|A Chain A, Crystal Structure Of A Zinc-Type Alcohol Dehydrogenase-Like Protein Yahk Length = 369

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 16/173 (9%)
Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           +  KA  A+   +PL   D+    P   +V+I+I +  +CH+D +    +    ++PC+ 
Sbjct: 21  LKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVP 80
Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE  G V +VG+ V +  PGD V + C    C+ C+ C+ G  N C  + G   +    
Sbjct: 81  GHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNS---- 136
Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI-DPQAPLDKVCLLGCG 178
                      +P +   G   +SQ  VVH+  V +I  PQ  L  V  L C 
Sbjct: 137 -------PTPDEPGHTLGG---YSQQIVVHERYVLRIRHPQEQLAAVAPLLCA 179

>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase Length = 343

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 87/214 (40%), Gaps = 23/214 (10%)
Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG-KDPEGLFPCILGHEAAGIVESVGE 80
           L + D+ V  P   EVR+++   AL H D +   G   P+   P +LG + +G+V++VG 
Sbjct: 15  LEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVGP 74
Query: 81  GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPI 140
           GV    PGD V+      C  C+ C +G+ NLC                  R+ I G+  
Sbjct: 75  GVEGFAPGDEVVINPGLSCGRCERCLAGEDNLC-----------------PRYQILGE-- 115
Query: 141 YHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAV 200
            H  G  T+++Y V+ + ++A        ++   +     T    V +   V PG  V V
Sbjct: 116 -HRHG--TYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLV 172
Query: 201 FGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
              G+              +RVI       K  R
Sbjct: 173 MAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRR 206

>pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenase) From Silverleaf Whitefly Length = 352

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 4/105 (3%)
Query: 12  AAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDPEGLF--PCILG 68
           +AV ++ N  L +E   +  P+  EV +++ +  +C +D + +  G+  + +   P ++G
Sbjct: 7   SAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIG 65
Query: 69  HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC 113
           HEA+G V  VG+ V  ++ GD V       CR C+FCK GK NLC
Sbjct: 66  HEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLC 110

>pdb|2XAA|A Chain A, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm 44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol Length = 345

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 88/227 (38%), Gaps = 41/227 (18%)
Query: 19  NKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF--PCILGHEAAGIVE 76
           ++P+V+ D+    P  GE+ +K+    LCH+D +       +  +  P  LGHE  G V 
Sbjct: 11  SEPVVV-DIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVA 69
Query: 77  SVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSIN 136
            +GEGVT    GD V       C  C  C  G+ N C               R +   I 
Sbjct: 70  ELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYC--------------TRAADLGIT 115
Query: 137 ----GKPIYHFMGTSTFSQYTVV----HDVSVAKIDP--QAPLDKVCLLGCGVPTGLGAV 186
               G P        + ++Y +V    H V +  +DP   APL    L      T   A+
Sbjct: 116 PPGLGSP-------GSMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGL------TPYHAI 162
Query: 187 WNTAK-VEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKF 232
                 + PGS   V G+G +             +RVI +D+D  + 
Sbjct: 163 SRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRL 209

>pdb|4EEX|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Length = 348

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 27/213 (12%)
Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81
           LV ++++   P   E  + + +  +CHTD +  +G D       +LGHE  GIV+ +G  
Sbjct: 16  LVEKELRAIKPN--EALLDMEYCGVCHTDLHVAAG-DYGNKAGTVLGHEGIGIVKEIGAD 72
Query: 82  VTEVQPGDHVIPCYQAE-CRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPI 140
           V+ +Q GD V   +  E C  C++C SG    C +V+ A             +S++G   
Sbjct: 73  VSSLQVGDRVSVAWFFEGCGHCEYCVSGNETFCREVKNAG------------YSVDG--- 117
Query: 141 YHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAV 200
                     +  VV D +V   D   P++   +   GV T        + V+PG    +
Sbjct: 118 ------GMAEEAIVVADYAVKVPDGLDPIEASSITCAGVTT--YKAIKVSGVKPGDWQVI 169
Query: 201 FGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFD 233
           FG G +             ++VI +DI+  K +
Sbjct: 170 FGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLN 202

>pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Variant Re1 Length = 348

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 27/213 (12%)
Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81
           LV ++++   P   E  + + +  +CHTD +  +G D       +LGHE  GIV+ +G  
Sbjct: 16  LVEKELRAIKPN--EALLDMEYCGVCHTDLHVAAG-DFGNKAGTVLGHEGIGIVKEIGAD 72
Query: 82  VTEVQPGDHVIPCYQAE-CRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPI 140
           V+ +Q GD V   +  E C  C++C SG    C +V+ A             +S++G   
Sbjct: 73  VSSLQVGDRVSVAWFFEGCGHCEYCVSGNETFCREVKNAG------------YSVDG--- 117
Query: 141 YHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAV 200
                     +  VV D +V   D   P++   +   GV T        + V+PG    +
Sbjct: 118 ------GMAEEAIVVADYAVKVPDGLDPIEASSITCAGVTT--YKAIKVSGVKPGDWQVI 169
Query: 201 FGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFD 233
           FG G +             ++VI +DI+  K +
Sbjct: 170 FGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLN 202

>pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus Tokodaii Strain7 Length = 347

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 86/206 (41%), Gaps = 21/206 (10%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--------DPEGL 62
           +A    E  KPL +ED+ +  P+  +V IKI    +CH+D +   G+        D    
Sbjct: 2   RAMRLVEIGKPLKLEDIPIPKPKGSQVLIKIEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61
Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVR---- 117
            P  LGHE AG +E VG+ V     GD V +  ++ E   C +C+ G+ +LC   R    
Sbjct: 62  LPVTLGHEIAGRIEEVGDEVVGYSKGDLVAVNPWEGEG-NCYYCRIGEEHLCDSPRWLGI 120
Query: 118 ---GATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL 174
              GA    V++   K  + +            T S  T    V  A +DP   L    +
Sbjct: 121 NYDGAYAEYVLVPHYKYLYKLRRLSAVE-AAPLTCSGVTTYRAVRKASLDPSKTL---VV 176
Query: 175 LGCGVPTGLGAVWNTAKVEPGSIVAV 200
           +G G   G  A+     V   +I+ V
Sbjct: 177 IGAGGGLGTMAIQIAKAVSGATIIGV 202

>pdb|2DQ4|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase Length = 343

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-PEGLF--PCIL 67
           +A     P + L + D  V  P  GE+ +++   ++C TD + W       G    P + 
Sbjct: 2   RALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVT 61
Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC 113
           GHE +G+VE+VG GV   Q GDHV       C  C  C++G  ++C
Sbjct: 62  GHEFSGVVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVC 107

>pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From Thermotoga Maritima At 2.00 A Resolution Length = 380

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           +   A V  + N+PLV ++ +++    G + ++IL   +C +D + + G+DP    P IL
Sbjct: 16  LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIIL 75
Query: 68  GHEAAG-IVESVGEGV----TEVQPGDHVIPCYQAECRECKFCKSGK 109
           GHE AG +VE  GE        ++PGD ++      C EC +CK  K
Sbjct: 76  GHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSK 122

>pdb|3GFB|A Chain A, L-Threonine Dehydrogenase (Tktdh) From The Hyperthermophilic Archaeon Thermococcus Kodakaraensis Length = 350

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 26  DVQVAPPQAGEVRIKILFTALCHTDA--YTWSGKDPEGLFP-CILGHEAAGIVESVGEGV 82
           +V V  P  GEV IK+L T++C TD   Y W+      + P  I+GHE AG V  VG GV
Sbjct: 21  EVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEVGPGV 80
Query: 83  TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR 117
            ++Q GD++       C +C  CK  + ++C   +
Sbjct: 81  EDLQVGDYISVETHIVCGKCYACKHNRYHVCQNTK 115

>pdb|1R37|A Chain A, Alcohol Dehydrogenase From Sulfolobus Solfataricus Complexed With Nad(H) And 2-Ethoxyethanol Length = 347

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--------DPEGL 62
           +A    E  KPL ++++ V  P+  +V IK+    +CH+D +   G+        D    
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61
Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVR 117
            P  LGHE AG +E VG+ V     GD V +  +Q E   C +C+ G+ +LC   R
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEG-NCYYCRIGEEHLCDSPR 116

>pdb|1NTO|A Chain A, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon Sulfolobus Solfataricus-Monoclinic Crystal Form Length = 347

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--------DPEGL 62
           +A    E  KPL ++++ V  P+  +V IK+    +CH+D +   G+        D    
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61
Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVR 117
            P  LGHE AG +E VG+ V     GD V +  +Q E   C +C+ G+ +LC   R
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEG-NCYYCRIGEEHLCDSPR 116

>pdb|1JVB|A Chain A, Alcohol Dehydrogenase From The Archaeon Sulfolobus Solfataricus Length = 347

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--------DPEGL 62
           +A    E  KPL ++++ V  P+  +V IK+    +CH+D +   G+        D    
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHXRQGRFGNLRIVEDLGVK 61
Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVR 117
            P  LGHE AG +E VG+ V     GD V +  +Q E   C +C+ G+ +LC   R
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEG-NCYYCRIGEEHLCDSPR 116

>pdb|3I4C|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh) Double Mutant (W95l,N249y) Length = 347

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--------DPEGL 62
           +A    E  KPL ++++ V  P+  +V IK+    +CH+D +   G+        D    
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61
Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVR 117
            P  LGHE AG +E VG+ V     GD V +   Q E   C +C+ G+ +LC   R
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPLQGEG-NCYYCRIGEEHLCDSPR 116

>pdb|4A2C|A Chain A, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase From Escherichia Coli Length = 346

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Query: 36  EVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV---- 91
           EVR+KI  + LC +D      K+    +P  LGHE +G +++VG GV ++ PGD V    
Sbjct: 27  EVRVKIASSGLCGSD-LPRIFKNGAHYYPITLGHEFSGYIDAVGSGVDDLHPGDAVACVP 85
Query: 92  -IPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSI 135
            +PC+   EC +  + +  K +  G  R    A  ++  RK+ F++
Sbjct: 86  LLPCFTCPECLKGFYSQCAKYDFIGSRRDGGFAEYIVVKRKNVFAL 131

>pdb|2DFV|A Chain A, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus Horikoshii Length = 347

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 26  DVQVAPPQAGEVRIKILFTALCHTDA--YTWSGKDPEGLFP-CILGHEAAGIVESVGEGV 82
           +V V  P  GEV IK+L T++C TD   Y W+      + P  I GHE AG V  +G GV
Sbjct: 20  EVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIXGHEVAGEVVEIGPGV 79
Query: 83  TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR 117
             ++ GD+V       C +C  C+ G+ ++C   +
Sbjct: 80  EGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTK 114

>pdb|2D8A|A Chain A, Crystal Structure Of Ph0655 From Pyrococcus Horikoshii Ot3 Length = 348

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 26  DVQVAPPQAGEVRIKILFTALCHTDA--YTWSGKDPEGLFP-CILGHEAAGIVESVGEGV 82
           +V V  P  GEV IK+L T++C TD   Y W+      + P  I GHE AG V  +G GV
Sbjct: 21  EVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIXGHEVAGEVVEIGPGV 80
Query: 83  TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR 117
             ++ GD+V       C +C  C+ G+ ++C   +
Sbjct: 81  EGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTK 115

>pdb|4EJ6|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase (Target Psi-012003) From Sinorhizobium Meliloti 1021 Length = 370

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 13  AVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAA 72
           AV  E    + + +V +  P   ++ +K+    +C TD +   G+ P    P  LGHE  
Sbjct: 26  AVRLESVGNISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFPS-TPPVTLGHEFC 84
Query: 73  GIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR 117
           GIV   G  V ++ PG  +       C  C  C++G+ NLC  +R
Sbjct: 85  GIVVEAGSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLR 129

>pdb|1PL7|A Chain A, Human Sorbitol Dehydrogenase (Apo) Length = 356

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF---PCILGHEAAGIVESV 78
           L +E+  +  P   EV +++    +C +D + W            P +LGHEA+G VE V
Sbjct: 19  LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKV 78
Query: 79  GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNL 112
           G  V  ++PGD V     A     +FCK G+ NL
Sbjct: 79  GSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNL 112

>pdb|1YQD|A Chain A, Sinapyl Alcohol Dehydrogenase Complexed With Nadp+ Length = 366

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 22/146 (15%)
Query: 36  EVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV-IPC 94
           +VR K+L+  +CH+D ++        ++P + GHE  G V  VG  V +V  GD V + C
Sbjct: 43  DVRFKVLYCGVCHSDLHSIKNDWGFSMYPLVPGHEIVGEVTEVGSKVKKVNVGDKVGVGC 102
Query: 95  YQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTST---FSQ 151
               C  C+ C +   N C K+                  +    IYH  GT T   +S 
Sbjct: 103 LVGACHSCESCANDLENYCPKM-----------------ILTYASIYH-DGTITYGGYSN 144
Query: 152 YTVVHDVSVAKIDPQAPLDKVCLLGC 177
           + V ++  + +     PLD    L C
Sbjct: 145 HMVANERYIIRFPDNMPLDGGAPLLC 170

>pdb|1PL6|A Chain A, Human SdhNADHINHIBITOR COMPLEX Length = 356

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF---PCILGHEAAGIVESV 78
           L +E+  +  P   EV ++     +C +D + W            P +LGHEA+G VE V
Sbjct: 19  LRLENYPIPEPGPNEVLLRXHSVGICGSDVHYWEYGRIGNFIVKKPXVLGHEASGTVEKV 78
Query: 79  GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNL 112
           G  V  ++PGD V     A     +FCK G+ NL
Sbjct: 79  GSSVKHLKPGDRVAIEPGAPRENDEFCKXGRYNL 112

>pdb|3QE3|A Chain A, Sheep Liver Sorbitol Dehydrogenase Length = 355

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDPEGLF--PCILGHEAAGIVESV 78
           L +E+  +  P   EV +K+    +C +D + W  G+  + +   P +LGHEA+G V  V
Sbjct: 18  LRLENYPIPEPGPNEVLLKMHSVGICGSDVHYWQHGRIGDFVVKKPMVLGHEASGTVVKV 77
Query: 79  GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNL 112
           G  V  +QPGD V     A  +  +FCK G+ NL
Sbjct: 78  GSLVRHLQPGDRVAIQPGAPRQTDEFCKIGRYNL 111

>pdb|2CD9|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 - Apo Form Length = 366

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 9/109 (8%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQA-GEVRIKILFTALCHTDAYTWSGKD-----PEGLFP 64
           KA +   PN  + ++DV      + G+++I+ ++  +C TD    +GK      P+G   
Sbjct: 2   KAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGTDREIVNGKLTLSTLPKGKDF 61
Query: 65  CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC 113
            +LGHEA G+VE    G ++   GD V+P  +  C  C+ C  G+ + C
Sbjct: 62  LVLGHEAIGVVEESYHGFSQ---GDLVMPVNRRGCGICRNCLVGRPDFC 107

>pdb|2CDB|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex With Nadp And Glucose Length = 366

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 9/109 (8%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQA-GEVRIKILFTALCHTDAYTWSGKD-----PEGLFP 64
           KA +   PN  + ++DV      + G+++I+ ++  +C  D    +GK      P+G   
Sbjct: 2   KAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDF 61
Query: 65  CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC 113
            +LGHEA G+VE    G ++   GD V+P  +  C  C+ C  G+ + C
Sbjct: 62  LVLGHEAIGVVEESYHGFSQ---GDLVMPVNRRGCGICRNCLVGRPDFC 107

>pdb|1KOL|A Chain A, Crystal Structure Of Formaldehyde Dehydrogenase Length = 398

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 86/205 (41%), Gaps = 26/205 (12%)
Query: 37  VRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQ 96
           V +K++ T +C +D +   G+        +LGHE  G V   G  V  +Q GD V   + 
Sbjct: 36  VILKVVSTNICGSDQHMVRGR-TTAQVGLVLGHEITGEVIEKGRDVENLQIGDLVSVPFN 94
Query: 97  AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMG--TSTFSQYTV 154
             C  C+ CK   T +C  V  A   G                 Y  MG  T   ++Y +
Sbjct: 95  VACGRCRSCKEMHTGVCLTVNPARAGGAYG--------------YVDMGDWTGGQAEYVL 140
Query: 155 V--HDVSVAKI-DPQAPLDKVCLLGCG---VPTGL-GAVWNTAKVEPGSIVAVFGLGTVX 207
           V   D ++ K+ D    ++K+  L C    +PTG  GAV  TA V PGS V V G G V 
Sbjct: 141 VPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGAV--TAGVGPGSTVYVAGAGPVG 198
Query: 208 XXXXXXXXXXXXSRVIGIDIDPKKF 232
                       + VI  D++P + 
Sbjct: 199 LAAAASARLLGAAVVIVGDLNPARL 223

>pdb|1QOR|A Chain A, Crystal Structure Of Escherichia Coli Quinone Oxidoreductase Complexed With Nadph Length = 327

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 21 PLVIEDVQVAP--PQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESV 78
          P V++ V+  P  P   E++++     +   D Y  SG  P    P  LG EAAGIV  V
Sbjct: 13 PEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKV 72
Query: 79 GEGVTEVQPGDHVIPCYQA 97
          G GV  ++ GD V+    A
Sbjct: 73 GSGVKHIKAGDRVVYAQSA 91

>pdb|1JQB|A Chain A, Alcohol Dehydrogenase From Clostridium Beijerinckii: Crystal Structure Of Mutant With Enhanced Thermal Stability Length = 351

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 67/167 (40%), Gaps = 24/167 (14%)
Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVI-PCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
           ILGHEA G V  VG  V + +PGD VI PC   + R  +     + +  G + G      
Sbjct: 56  ILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGW----- 110
Query: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPTG 182
               + S F               F +Y  V+  D+++A +    PL+   ++   + TG
Sbjct: 111 ----KFSNFK-----------DGVFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTG 155
Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDP 229
                  A +E GS V V G+G V              R+IG+   P
Sbjct: 156 FHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP 201

>pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato Dc3000 Quinone Oxidoreductase Length = 325

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 21 PLVIEDVQVAP----PQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVE 76
          P V+E V   P    PQA  VR K +   L   D Y  SG  P    P  LG E AG+VE
Sbjct: 13 PEVLEYVDFEPEAPGPQAVVVRNKAI--GLNFIDTYYRSGLYPAPFLPSGLGAEGAGVVE 70
Query: 77 SVGEGVTEVQPGDHV 91
          +VG+ VT  + GD V
Sbjct: 71 AVGDEVTRFKVGDRV 85

>pdb|3M6I|A Chain A, L-Arabinitol 4-Dehydrogenase Length = 363

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 33  QAGEVRIKILFTALCHTDAYTWS-GKDPEGLFPC--ILGHEAAGIVESVGEGVTEVQPGD 89
           + GEV + +  T +C +D + W  G     +  C  +LGHE+AG V +V   V  ++ GD
Sbjct: 39  KEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAGEVIAVHPSVKSIKVGD 98
Query: 90  HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIY-HFMGTST 148
            V    Q  C  C+ C +G+ N C +V   +   V    R+    +N   ++ H +G  +
Sbjct: 99  RVAIEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRR---YVNHPAVWCHKIGNMS 155
Query: 149 FSQYTVVHDVSVA 161
           +    ++  +SVA
Sbjct: 156 YENGAMLEPLSVA 168

>pdb|3FPL|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of C. Beijerinckii Adh By T. Brockii Adh Length = 351

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 67/167 (40%), Gaps = 24/167 (14%)
Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVI-PCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
           ILGHEA G V  VG  V + +PGD VI PC   + R  +     + +  G + G      
Sbjct: 56  ILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGW----- 110
Query: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPTG 182
               + S F               F +Y  V+  D+++A +    PL+   ++   + TG
Sbjct: 111 ----KFSNFK-----------DGVFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTG 155
Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDP 229
                  A +E G+ VAV G+G V              R+I +   P
Sbjct: 156 FHGA-ELADIELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAVGSRP 201

>pdb|1PED|A Chain A, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form) Length = 351

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 67/167 (40%), Gaps = 24/167 (14%)
Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVI-PCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
           ILGHEA G V  VG  V + +PGD VI PC   + R  +     + +  G + G      
Sbjct: 56  ILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGW----- 110
Query: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPTG 182
               + S F               F +Y  V+  D+++A +    PL+   ++   + TG
Sbjct: 111 ----KFSNFK-----------DGVFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTG 155
Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDP 229
                  A ++ GS V V G+G V              R+IG+   P
Sbjct: 156 FHGA-ELADIQMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP 201

>pdb|2B5W|A Chain A, Crystal Structure Of D38c Glucose Dehydrogenase Mutant From Haloferax Mediterranei Length = 357

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 13 AVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---PEGLFPCILGH 69
          AV    ++P+VIE  +   P++GE  ++ L   +C TD    +G     PEG    +LGH
Sbjct: 5  AVKRGEDRPVVIEKPR-PEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVLGH 63
Query: 70 EAAGIVESVGEGVTEVQPGDHVIPC 94
          EA G+V  V    TE++ GD V+P 
Sbjct: 64 EAVGVV--VDPNDTELEEGDIVVPT 86

>pdb|2B83|A Chain A, A Single Amino Acid Substitution In The Clostridium Beijerinckii Alcohol Dehydrogenase Is Critical For Thermostabilization Length = 351

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 66/167 (39%), Gaps = 24/167 (14%)
Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVI-PCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
           ILGHEA G V  VG  V + +PGD VI PC   + R  +       +  G + G      
Sbjct: 56  ILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFPQHSNGMLAGW----- 110
Query: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPTG 182
               + S F               F +Y  V+  D+++A +    PL+   ++   + TG
Sbjct: 111 ----KFSNFK-----------DGVFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTG 155
Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDP 229
                  A ++ GS V V G+G V              R+IG+   P
Sbjct: 156 FHGA-ELADIQMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP 201

>pdb|3FTN|A Chain A, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE BY EXCHANGE Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 76/193 (39%), Gaps = 22/193 (11%)
Query: 39  IKILFTALCHTDAYT-WSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDH-VIPCYQ 96
           ++ L  A C +D +T + G   E     ILGHEA G V  VG  V + +PGD  V+P   
Sbjct: 29  VRPLAVAPCTSDIHTVFEGAIGE-RHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAIT 87
Query: 97  AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH 156
            + R  +  +    +  G + G   + V        F +N                    
Sbjct: 88  PDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDA------------------ 129
Query: 157 DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXX 216
           D+++A +  + PL+   ++   + TG       A +E GS V V G+G V          
Sbjct: 130 DMNLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKL 188
Query: 217 XXXSRVIGIDIDP 229
               R+IG+   P
Sbjct: 189 RGAGRIIGVGSRP 201

>pdb|2DPH|A Chain A, Crystal Structure Of Formaldehyde Dismutase Length = 398

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 37  VRIKILFTALCHTDAYTWSGKD--PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPC 94
           V +K++ T +C +D + + G+   P+G    +LGHE  G V   G  V  +  GD V   
Sbjct: 35  VILKVVSTNICGSDQHIYRGRFIVPKG---HVLGHEITGEVVEKGSDVELMDIGDLVSVP 91
Query: 95  YQAECRECKFCKSGKTNLC 113
           +   C  C+ CK  ++++C
Sbjct: 92  FNVACGRCRNCKEARSDVC 110

>pdb|1WLY|A Chain A, Crystal Structure Of 2-haloacrylate Reductase Length = 333

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 12 AAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF----PC 65
          AAV  +   P   V E+V+V  P  G+VR++     +   D Y  +G  P  L     P 
Sbjct: 4  AAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGI-PHPLVVGEPPI 62
Query: 66 ILGHEAAGIVESVGEGVTEVQPGDHVIPC 94
          ++G EAA +VE VG GVT+   G+ V  C
Sbjct: 63 VVGFEAAAVVEEVGPGVTDFTVGERVCTC 91

>pdb|1YKF|A Chain A, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium Brockii Length = 352

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 76/193 (39%), Gaps = 22/193 (11%)
Query: 39  IKILFTALCHTDAYT-WSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDH-VIPCYQ 96
           ++ L  A C +D +T + G   E     ILGHEA G V  VG  V + +PGD  V+P   
Sbjct: 29  VRPLAVAPCTSDIHTVFEGAIGE-RHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAIT 87
Query: 97  AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH 156
            + R  +  +    +  G + G   + V        F +N                    
Sbjct: 88  PDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDA------------------ 129
Query: 157 DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXX 216
           D+++A +  + PL+   ++   + TG       A +E G+ VAV G+G V          
Sbjct: 130 DMNLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELADIELGATVAVLGIGPVGLMAVAGAKL 188
Query: 217 XXXSRVIGIDIDP 229
               R+I +   P
Sbjct: 189 RGAGRIIAVGSRP 201

>pdb|2NVB|A Chain A, Contribution Of Pro275 To The Thermostability Of The Alcohol Dehydrogenases (Adhs) Length = 352

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 76/193 (39%), Gaps = 22/193 (11%)
Query: 39  IKILFTALCHTDAYT-WSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDH-VIPCYQ 96
           ++ L  A C +D +T + G   E     ILGHEA G V  VG  V + +PGD  V+P   
Sbjct: 29  VRPLAVAPCTSDIHTVFEGAIGE-RHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAIT 87
Query: 97  AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH 156
            + R  +  +    +  G + G   + V        F +N                    
Sbjct: 88  PDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDA------------------ 129
Query: 157 DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXX 216
           D+++A +  + PL+   ++   + TG       A +E G+ VAV G+G V          
Sbjct: 130 DMNLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELADIELGATVAVLGIGPVGLMAVAGAKL 188
Query: 217 XXXSRVIGIDIDP 229
               R+I +   P
Sbjct: 189 RGAGRIIAVGSRP 201

>pdb|3FSR|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 76/193 (39%), Gaps = 22/193 (11%)
Query: 39  IKILFTALCHTDAYT-WSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDH-VIPCYQ 96
           ++ L  A C +D +T + G   E     ILGHEA G V  VG  V + +PGD  V+P   
Sbjct: 29  VRPLAVAPCTSDIHTVFEGAIGE-RHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAIT 87
Query: 97  AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH 156
            + R  +  +    +  G + G   + V        F +N                    
Sbjct: 88  PDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDA------------------ 129
Query: 157 DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXX 216
           D+++A +  + PL+   ++   + TG       A ++ GS V V G+G V          
Sbjct: 130 DMNLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELADIQMGSSVVVIGIGAVGLMGIAGAKL 188
Query: 217 XXXSRVIGIDIDP 229
               R+IG+   P
Sbjct: 189 RGAGRIIGVGSRP 201

>pdb|3SLK|A Chain A, Structure Of Ketoreductase And Enoylreductase Didomain From Modular Polyketide Synthase Length = 795

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCI--LGHEAAGIVESVG 79
           LV E    AP   GEVRI +    +   DA         G++P +  LG E AG+V   G
Sbjct: 226 LVDEPTATAPLGDGEVRIAMRAAGVNFRDALI-----ALGMYPGVASLGSEGAGVVVETG 280
Query: 80  EGVTEVQPGDHVI 92
            GVT + PGD V+
Sbjct: 281 PGVTGLAPGDRVM 293

>pdb|3GAZ|A Chain A, Crystal Structure Of An Alcohol Dehydrogenase Superfamily Protein From Novosphingobium Aromaticivorans Length = 343

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 9  TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL--FPCI 66
          T  AAV  E N P V+  +    P  G+V ++I  +     DA   +G+ P      P I
Sbjct: 7  TXIAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAI 66
Query: 67 LGHEAAGIVESVGEGVTEVQPGDHVI 92
          LG + AG V +VG  V   + GD V 
Sbjct: 67 LGXDLAGTVVAVGPEVDSFRVGDAVF 92

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	239
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	1e-160
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	1e-159
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	1e-158
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	1e-158
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	1e-157
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	1e-138
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	1e-117
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	3e-61
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	1e-52
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	3e-46
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	3e-46
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	4e-46
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	6e-46
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	1e-44
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	2e-44
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	2e-43
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	3e-43
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	4e-43
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	2e-40
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	2e-39
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	1e-38
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	2e-38
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	7e-38
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	8e-38
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	5e-36
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	2e-29
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	5e-29
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	6e-29
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	3e-27
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	5e-27
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	3e-26
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	4e-24
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	8e-24
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	4e-22
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	5e-22
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	3e-21
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	1e-20
3gms_A	340	Putative NADPH:quinone reductase; structural genom	4e-18
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	2e-16
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	3e-16
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	3e-15
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	6e-15
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	8e-15
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	9e-15
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	2e-14
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	7e-14
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	1e-13
4eye_A	342	Probable oxidoreductase; structural genomics, niai	3e-13
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	5e-13
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	6e-13
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	1e-12
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	2e-11
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	4e-11
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	7e-11
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	2e-10
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	9e-10
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	2e-09
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	9e-09
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	2e-08
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	3e-06
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	6e-04
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	7e-04

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score =  448 bits (1154), Expect = e-160
 Identities = 157/230 (68%), Positives = 181/230 (78%), Gaps = 1/230 (0%)

Query: 5   GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFP 64
            +VI CKAAVAWE  KPL IE+++VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP
Sbjct: 2   NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFP 61

Query: 65  CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
            ILGH  AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G+
Sbjct: 62  VILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGL 121

Query: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 184
           M  D  SRF+  GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG G
Sbjct: 122 MP-DGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYG 180

Query: 185 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           A  NTAK+EPGS+ AVFGLG VGLAV  G K AGASR+IG+DI+  KF R
Sbjct: 181 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFAR 230

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score =  444 bits (1145), Expect = e-159
 Identities = 133/238 (55%), Positives = 162/238 (68%), Gaps = 5/238 (2%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M T G+ ITCKAAVAWEP+KPL +E + VAPP+A EVRIKIL + +C +D+       P 
Sbjct: 1   MCTAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPS 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
             FP ILGHEA G+VES+G GVT V+PGD VIP +  +C  C+ CKS  +N C K     
Sbjct: 61  K-FPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGA 119

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
             G+M  D  SRF+  GKPIY+ MGTSTF++YTVV D++VAKIDP+APL+  CL+GCG  
Sbjct: 120 KTGLMA-DMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLES-CLIGCGFA 177

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD--REF 236
           TG GA  NTAKV PGS  AVFGLG VG +   G KAAGASR+IG+     KF    E 
Sbjct: 178 TGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL 235

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score =  442 bits (1139), Expect = e-158
 Identities = 128/239 (53%), Positives = 166/239 (69%), Gaps = 6/239 (2%)

Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
           T+G+VI CKAA+AW+   PL IE+++V+PP+A EVRI+++ T +C TD      K    L
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKK-AL 60

Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR---GA 119
           FP +LGHE AGIVESVG GVT  +PGD VIP +  +C+ CK C S  TNLCGK+R     
Sbjct: 61  FPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYP 120

Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 179
           T    +M DR SRF+  G+ IYHFMG S+FSQYTVV + ++A++D +A L++VCL+GCG 
Sbjct: 121 TIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGF 180

Query: 180 PTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD--REF 236
            +G GA  NTAKV PGS  AVFGLG VGL+   G K AGASR+I IDI+ +KF   +  
Sbjct: 181 SSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL 239

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score =  441 bits (1136), Expect = e-158
 Identities = 132/233 (56%), Positives = 164/233 (70%), Gaps = 2/233 (0%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
             P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  -LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTMQ-DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           G G+    AKV  GS  AVFGLG VGL+V  G KAAGA+R+IG+DI+  KF +
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAK 231

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score =  440 bits (1135), Expect = e-157
 Identities = 136/237 (57%), Positives = 171/237 (72%), Gaps = 3/237 (1%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           +T G+VI CKAAVAWE NKPLVIE+++V  P A E+RIKI+ T +CHTD Y       + 
Sbjct: 1   ATVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKD 60

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
            FP +LGHE AGIVESVG GVTE QPG+ VIP + ++C EC+FC+S KTN C K      
Sbjct: 61  GFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANES 120

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
              +M+ +++RF+  G+ +  F+GTSTFSQYTVV+ ++VAKIDP APLD VCLLGCGV T
Sbjct: 121 PD-VMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVST 179

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD--REF 236
           G GA  NTAKVEPGS  AVFGLG VGLA   G  +AGA R+I +D++P KF+  + F
Sbjct: 180 GFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF 236

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score =  390 bits (1005), Expect = e-138
 Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 7/235 (2%)

Query: 6   QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
           ++    AAV         ++ +++  PQ  EV +K++ T +CHTD      K P    P 
Sbjct: 3   ELKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVP-LPA 61

Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
           +LGHE +GI+E++G  VTE+Q GDHV+  Y   C +C  C +G    C +  G   +G  
Sbjct: 62  VLGHEGSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGAD 120

Query: 126 MNDRKSRFSINGKPIY--HFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGL 183
             +       + + +   HF   S+F+ Y +  + +  K+    P++ +  LGCG+ TG 
Sbjct: 121 S-EGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGA 179

Query: 184 GAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD--REF 236
           GA  N  KV P S    +G G VGL+    AK  GAS +I +DI   + +  ++ 
Sbjct: 180 GACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL 234

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score =  339 bits (872), Expect = e-117
 Identities = 61/237 (25%), Positives = 98/237 (41%), Gaps = 21/237 (8%)

Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           +   A V  + N+PLV ++ +++    G + ++IL   +C +D + + G+DP    P IL
Sbjct: 16  LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIIL 75

Query: 68  GHEAAGIVESVGEGVT-----EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
           GHE AG V  V           ++PGD ++      C EC +CK  K       R     
Sbjct: 76  GHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNR----K 131

Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH-DVSVAKIDPQAPLDKVCLLGCGVPT 181
              +N   S +        H  G   +S + V+  +  V K+  +  LD + +  C   T
Sbjct: 132 VYGINRGCSEYP-------HLRG--CYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGAT 182

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD--REF 236
              A     +   G  V + G G +GL     A++ GA  VI I   P +     E 
Sbjct: 183 AYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI 239

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score =  194 bits (496), Expect = 3e-61
 Identities = 53/226 (23%), Positives = 78/226 (34%), Gaps = 20/226 (8%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE--GLFPCILG 68
           KA    E     V+ D+    P  GE+ +K+    LCH+D +       +     P  LG
Sbjct: 2   KAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLG 61

Query: 69  HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
           HE  G V  +GEGVT    GD V       C  C  C  G+ N C +             
Sbjct: 62  HEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITP----- 116

Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKV-CLLGCGVPTGLGAVW 187
                   G          + ++Y +V                   L   G+        
Sbjct: 117 --PGLGSPG----------SMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISR 164

Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
               + PGS   V G+G +G    +  +A  A+RVI +D+D  +  
Sbjct: 165 VLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLA 210

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score =  172 bits (439), Expect = 1e-52
 Identities = 65/241 (26%), Positives = 95/241 (39%), Gaps = 30/241 (12%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQV-APPQAGEVRIKILFTALCHTDAYTWSGKDP 59
            S    V   KAA   E NKPL IEDV         +V ++I    +CHTD +   G   
Sbjct: 7   FSQSLGVERLKAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWH 66

Query: 60  EGL---FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKV 116
           E L    P  LGHE  G +E V EGV  ++ GD VI         C  C++G+   C  +
Sbjct: 67  ELLQPKLPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENL 126

Query: 117 RGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK---VC 173
                            +I+G           F+++      SV K+      +K   + 
Sbjct: 127 EF------------PGLNIDG----------GFAEFMRTSHRSVIKLPKDISREKLVEMA 164

Query: 174 LLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF 232
            L     T   AV      + PG+ VA+ G+G +G    +  K    + VI +D+  +K 
Sbjct: 165 PLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKL 224

Query: 233 D 233
            
Sbjct: 225 K 225

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score =  155 bits (395), Expect = 3e-46
 Identities = 56/232 (24%), Positives = 93/232 (40%), Gaps = 32/232 (13%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG--------KDPEGL 62
           +A    E  KPL ++++ V  P+  +V IK+    +CH+D +   G        +D    
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61

Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
            P  LGHE AG +E VG+ V     GD V          C +C+ G+ +LC   R   G 
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPR-WLG- 119

Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG 182
                      + +G           +++Y +V          +    +   L C   T 
Sbjct: 120 ----------INFDG----------AYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITT 159

Query: 183 LGAVWNTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
             AV   A ++P   + V G  G +G    + AKA   + +IG+D+  +  +
Sbjct: 160 YRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVE 210

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score =  155 bits (395), Expect = 3e-46
 Identities = 62/231 (26%), Positives = 95/231 (41%), Gaps = 29/231 (12%)

Query: 9   TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE--GLFPCI 66
             KAA+  + ++PL IEDV +  PQ  EV I+I    +C TD   W G + +     P I
Sbjct: 3   KSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPII 62

Query: 67  LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           LGHE AG +  VGE + +V+ GD+V+         C++C+ GK N+C       G     
Sbjct: 63  LGHENAGTIVEVGE-LAKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQI-IPG----- 115

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
                  + NG           FS+Y +V               +   L     T +GA+
Sbjct: 116 ------QTTNG----------GFSEYMLVKSSRWLVKLNSLSPVEAAPLADAGTTSMGAI 159

Query: 187 ---WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDPKKFD 233
                        +V V G+G + +   +  KA   +  ++GI    K  D
Sbjct: 160 RQALPFISKFAEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRD 210

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score =  155 bits (394), Expect = 4e-46
 Identities = 70/230 (30%), Positives = 102/230 (44%), Gaps = 36/230 (15%)

Query: 9   TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCIL 67
             KAAV      PL I++V V  P  G+V++KI  + +CHTD +   G  P     P I 
Sbjct: 2   MMKAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIP 61

Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE  G V +VG GV+ V+ GD V +P   + C  C+ C  G   LC K +         
Sbjct: 62  GHEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTG------ 115

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGC-GVPTGLGA 185
                 +S+NG           + +Y V     V  +  +    ++  + C GV      
Sbjct: 116 ------YSVNG----------GYGEYVVADPNYVGLLPDKVGFVEIAPILCAGV-----T 154

Query: 186 VWN---TAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKK 231
           V+         PG  V + G+G +G +AV + A+A G  RV  +DID  K
Sbjct: 155 VYKGLKVTDTRPGQWVVISGIGGLGHVAV-QYARAMGL-RVAAVDIDDAK 202

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score =  155 bits (393), Expect = 6e-46
 Identities = 71/228 (31%), Positives = 106/228 (46%), Gaps = 36/228 (15%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGH 69
           KAAV  +  +PL I++V+      GEV ++I    +CHTD +   G  P     P I GH
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61

Query: 70  EAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
           E  GIVE VG GVT ++ GD V IP   + C  C +C SG+  LC   + A         
Sbjct: 62  EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAG-------- 113

Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGC-GVPTGLGAVW 187
               +S++G           +++Y       V KI      ++   + C GV       +
Sbjct: 114 ----YSVDG----------GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGV-----TTY 154

Query: 188 N---TAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKK 231
                   +PG  VA++G+G +G +AV + AKA G   V+ +DI  +K
Sbjct: 155 KALKVTGAKPGEWVAIYGIGGLGHVAV-QYAKAMGL-NVVAVDIGDEK 200

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score =  152 bits (386), Expect = 1e-44
 Identities = 53/227 (23%), Positives = 86/227 (37%), Gaps = 38/227 (16%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KA         + + +V +  P   ++ +K+    +C TD +   G+ P    P  LGHE
Sbjct: 25  KAVRLESVGN-ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFPST-PPVTLGHE 82

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
             GIV   G  V ++ PG  +       C  C  C++G+ NLC  +R             
Sbjct: 83  FCGIVVEAGSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLR------------- 129

Query: 131 SRFSINGKPIYHFMGTST---FSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTGLG 184
                        +G      F++Y +V      +I              L C +     
Sbjct: 130 ------------AIGIHRDGGFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCL----H 173

Query: 185 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
            V + + ++ GS VA+ G G +GL   + A+ AGA+ VI       K
Sbjct: 174 GV-DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATK 219

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score =  151 bits (384), Expect = 2e-44
 Identities = 55/231 (23%), Positives = 88/231 (38%), Gaps = 41/231 (17%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF----PCI 66
           +A     P + L + D  V  P  GE+ +++   ++C TD + W   D         P +
Sbjct: 2   RALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKW-DAWARGRIRPPLV 60

Query: 67  LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
            GHE +G+VE+VG GV   Q GDHV       C  C  C++G  ++C   +         
Sbjct: 61  TGHEFSGVVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQ--------- 111

Query: 127 NDRKSRFSINGKPIYHFMGTS---TFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVP 180
                            +G      F++Y VV   +        P +   +    G  V 
Sbjct: 112 ----------------ILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAVH 155

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
           T             G  V + G G +GL  A   +A+GA  ++  D +P +
Sbjct: 156 TVY-----AGSGVSGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYR 201

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score =  148 bits (377), Expect = 2e-43
 Identities = 61/231 (26%), Positives = 92/231 (39%), Gaps = 42/231 (18%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF----PCI 66
            A +  +P     + +V V  P  GEV IK+L T++C TD + +   +         P I
Sbjct: 6   VAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEW-NEWAQSRIKPPQI 64

Query: 67  LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           +GHE AG V  +G GV  ++ GD+V       C +C  C+ G+ ++C   +         
Sbjct: 65  MGHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTK--------- 115

Query: 127 NDRKSRFSINGKPIYHFMGTST---FSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVP 180
                             G  T   F++Y VV   ++ K     P +   L   LG  V 
Sbjct: 116 ----------------IFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVD 159

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
           T L           G  V + G G +GL     AKA+GA  VI  +    +
Sbjct: 160 TVLAG------PISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFR 204

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score =  148 bits (376), Expect = 3e-43
 Identities = 66/231 (28%), Positives = 101/231 (43%), Gaps = 37/231 (16%)

Query: 9   TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL-FPCIL 67
           T K  + +E +  L  +D+ V  P+A E+ I + ++ +CHTD + W G  P  +  P + 
Sbjct: 5   TQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVG 64

Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE AG+V  +GE V   + GD+  I      C  C++C+ G  + C     +       
Sbjct: 65  GHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSG------ 118

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGC-GVPT--GL 183
                 ++ +G          +F QY     V  A I     L +V  + C G+     L
Sbjct: 119 ------YTHDG----------SFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKAL 162

Query: 184 GAVWNTAKVEPGSIVAVFGLGTVGL---AVAEGAKAAGASRVIGIDIDPKK 231
                +A +  G  VA+ G    GL   AV + AKA G  RV+GID    K
Sbjct: 163 ----KSANLMAGHWVAISGAAG-GLGSLAV-QYAKAMGY-RVLGIDGGEGK 206

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score =  147 bits (374), Expect = 4e-43
 Identities = 56/228 (24%), Positives = 88/228 (38%), Gaps = 39/228 (17%)

Query: 11  KAAVAWEPNKPLVIEDVQV-APPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH 69
           K+ V       + + +  +       EVR+KI  + LC +D       +    +P  LGH
Sbjct: 2   KSVVNDTDGI-VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFK-NGAHYYPITLGH 59

Query: 70  EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
           E +G +++VG GV ++ PGD V       C  C  C  G  + C K              
Sbjct: 60  EFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYD------------ 107

Query: 130 KSRFSINGKPIYHFMGTS---TFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTGL 183
                        F+G+     F++Y VV   +V  +    P++       +  G+    
Sbjct: 108 -------------FIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGL---- 150

Query: 184 GAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
            A    A+      V + G GT+GL   + A A GA  V  IDI  +K
Sbjct: 151 HAFHL-AQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEK 197

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score =  140 bits (356), Expect = 2e-40
 Identities = 55/237 (23%), Positives = 86/237 (36%), Gaps = 53/237 (22%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF----PCI 66
            + V       L +E+  +  P   EV +++    +C +D + W      G F    P +
Sbjct: 9   LSLV-VHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEY-GRIGNFIVKKPMV 66

Query: 67  LGHEAAGIVESVGEGVTEVQPGDHV-----IPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           LGHEA+G VE VG  V  ++PGD V      P         +FCK G+ NL   +     
Sbjct: 67  LGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPR-----ENDEFCKMGRYNLSPSIF---- 117

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTS----TFSQYTVVHDVSVAKIDPQAPLDKVCL--- 174
                                F  T        ++   +     K+      ++  L   
Sbjct: 118 ---------------------FCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEP 156

Query: 175 LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
           L  G+     A      V  G  V V G G +G+     AKA GA++V+  D+   +
Sbjct: 157 LSVGI----HAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATR 208

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score =  138 bits (350), Expect = 2e-39
 Identities = 46/242 (19%), Positives = 81/242 (33%), Gaps = 39/242 (16%)

Query: 11  KAAVAWEPNKPLVIEDVQV-APPQAGEVRIKILFTALCHTDAYTWSGKD-----PEGLFP 64
           KA +   PN  + ++DV        G+++I+ ++  +C  D    +GK      P+G   
Sbjct: 2   KAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDF 61

Query: 65  CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
            +LGHEA G+VE    G      GD V+P  +  C  C+ C  G+ + C        AG+
Sbjct: 62  LVLGHEAIGVVEESYHGF---SQGDLVMPVNRRGCGICRNCLVGRPDFCETGEF-GEAGI 117

Query: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL--LGCGVPT- 181
              D                G     ++       + KI        +    L     + 
Sbjct: 118 HKMD----------------GF--MREWWYDDPKYLVKIPKSIEDIGILAQPLADIEKSI 159

Query: 182 --------GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
                    +              V V G G +G+      +  G    +    +P + +
Sbjct: 160 EEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVE 219

Query: 234 RE 235
           + 
Sbjct: 220 QT 221

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score =  137 bits (347), Expect = 1e-38
 Identities = 45/245 (18%), Positives = 78/245 (31%), Gaps = 50/245 (20%)

Query: 11  KAAVAWEPNKPLVIEDVQV-APPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF------ 63
             +  W   + + +E+V      +  E+ IK+    +C +D +     +   +       
Sbjct: 32  LGSKVWRYPE-VRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTG 90

Query: 64  -PCILGHEAAGIVESVGEGVTE------VQPGDHVIPCYQAECRECKFCKSGKTNLCGKV 116
            P  LGHE +G+V   G            + G+ V       C  C+ C  G  N C  +
Sbjct: 91  FPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENL 150

Query: 117 RGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI-------DPQAPL 169
                 G          +++G           F++Y  V       +       +     
Sbjct: 151 NEL---GF---------NVDG----------AFAEYVKVDAKYAWSLRELEGVYEGDRLF 188

Query: 170 DKVCL---LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
               L              +     + PG  V + G G +GLA     K AGAS+VI  +
Sbjct: 189 LAGSLVEPTSVAYN---AVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSE 245

Query: 227 IDPKK 231
               +
Sbjct: 246 PSEVR 250

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score =  136 bits (344), Expect = 2e-38
 Identities = 57/239 (23%), Positives = 84/239 (35%), Gaps = 48/239 (20%)

Query: 7   VITCKAAVAWEPNKPLVIEDVQVAP-PQAGEVRIKILFTALCHTD--AYTWSGKDPEGLF 63
           V T      W       +E VQ     + GEV + +  T +C +D   +        G  
Sbjct: 12  VFTNPQHDLWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKH---GCIGPM 68

Query: 64  ----PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGA 119
                 +LGHE+AG V +V   V  ++ GD V    Q  C  C+ C +G+ N C +V   
Sbjct: 69  IVECDHVLGHESAGEVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVD-- 126

Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTS----TFSQYTVVHDVSVAKIDPQAPLDKVCL- 174
                                  F+ T        +Y     V   KI      +   + 
Sbjct: 127 -----------------------FLSTPPVPGLLRRYVNHPAVWCHKI-GNMSYENGAML 162

Query: 175 --LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
             L   +      +   A V  G  V + G G +GL     AKAAGA  ++  DID  +
Sbjct: 163 EPLSVAL----AGL-QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGR 216

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score =  134 bits (339), Expect = 7e-38
 Identities = 62/231 (26%), Positives = 94/231 (40%), Gaps = 42/231 (18%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GK--DPEGLFPCIL 67
            +AV       L +E   +  P+  EV +++ +  +C +D + +  G+  D     P ++
Sbjct: 6   LSAV-LYKQNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVI 64

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           GHEA+G V  VG+ V  ++ GD V       CR C+FCK GK NLC  +           
Sbjct: 65  GHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLT---------- 114

Query: 128 DRKSRFSINGKPIYHFMGTS----TFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVP 180
                          F  T       ++Y V       K+     L++  L   L  GV 
Sbjct: 115 ---------------FCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALLEPLSVGV- 158

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
               A    A V+ G+ V V G G +GL     AKA GA  V+     P++
Sbjct: 159 ---HAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTARSPRR 204

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score =  134 bits (339), Expect = 8e-38
 Identities = 51/222 (22%), Positives = 81/222 (36%), Gaps = 25/222 (11%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           K        K +   + +   P   +  ++ L  A C +D +T            ILGHE
Sbjct: 2   KGFAMLSIGK-VGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGERHNMILGHE 60

Query: 71  AAGIVESVGEGVTEVQPGDHVI-PCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
           A G V  VG  V + +PGD V+ P            + G     G   G        N  
Sbjct: 61  AVGEVVEVGSEVKDFKPGDRVVVPAITP-DWRTSEVQRGYHQHSG---GMLAGWKFSN-- 114

Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
                 +G           F ++  V+  D+++A +  + PL+   ++   + TG     
Sbjct: 115 ----VKDG----------VFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAE 160

Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229
             A ++ G  V V G+G VGL    GA   GA R+  +    
Sbjct: 161 L-ANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRK 201

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score =  129 bits (327), Expect = 5e-36
 Identities = 43/235 (18%), Positives = 76/235 (32%), Gaps = 36/235 (15%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK---DPEGLFPCIL 67
           KA          V+ +     P++GE  ++ L   +C TD    +G     PEG    +L
Sbjct: 2   KAIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVL 61

Query: 68  GHEAAGIVESVGEGVTEVQPGDHV--IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
           GHEA G+V  V    TE++ GD V             ++ +  + ++           V 
Sbjct: 62  GHEAVGVV--VDPNDTELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVG 119

Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGV-PT 181
                     +G            S++    +  + +I P++  +   L   +       
Sbjct: 120 A---------HG----------YMSEFFTSPEKYLVRI-PRSQAELGFLIEPISITEKAL 159

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKA--AGASRVIGI---DIDPKK 231
                  +A     S   V G G++GL      K    G   +  +   D     
Sbjct: 160 EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPT 214

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score =  112 bits (283), Expect = 2e-29
 Identities = 58/233 (24%), Positives = 95/233 (40%), Gaps = 33/233 (14%)

Query: 13  AVAWEPNKPLVIEDVQ----VAP--PQAGEVRIKILFTALCHTDAYTWSGKDP--EGLFP 64
           +V +   + L +E V               V +K++ T +C +D + + G+    +G   
Sbjct: 5   SVVYHGTRDLRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFIVPKGH-- 62

Query: 65  CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC--GKVRGATGA 122
            +LGHE  G V   G  V  +  GD V   +   C  C+ CK  ++++C    V      
Sbjct: 63  -VLGHEITGEVVEKGSDVELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADL 121

Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKI----DPQAPLDKVCLLG 176
           G             G  +  + G    ++Y +V   D  + K          +  + L+ 
Sbjct: 122 G-----------AFGFDLKGWSGGQ--AEYVLVPYADYMLLKFGDKEQAMEKIKDLTLIS 168

Query: 177 CGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229
             +PTG     + A V+PGS V + G G VG   A GA+  GA+ VI  D +P
Sbjct: 169 DILPTGFHGCVS-AGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNP 220

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score =  111 bits (280), Expect = 5e-29
 Identities = 65/234 (27%), Positives = 94/234 (40%), Gaps = 35/234 (14%)

Query: 13  AVAWEPNKPLVIEDVQVA-------PPQAGEVRIKILFTALCHTDAYTWSGKDP--EGLF 63
            V +  +  + ++ +                V +K++ T +C +D +   G+     GL 
Sbjct: 5   GVVYLGSGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQVGL- 63

Query: 64  PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAG 123
             +LGHE  G V   G  V  +Q GD V   +   C  C+ CK   T +C  V  A   G
Sbjct: 64  --VLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGG 121

Query: 124 VMMNDRKSRFSINGKPIYHFMGTSTFSQ--YTVVH--DVSVAKI----DPQAPLDKVCLL 175
                        G   Y  MG  T  Q  Y +V   D ++ K+         +  +  L
Sbjct: 122 -----------AYG---YVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKIRDLTCL 167

Query: 176 GCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229
              +PTG       A V PGS V V G G VGLA A  A+  GA+ VI  D++P
Sbjct: 168 SDILPTGYHGAVT-AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP 220

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score =  110 bits (278), Expect = 6e-29
 Identities = 63/238 (26%), Positives = 99/238 (41%), Gaps = 32/238 (13%)

Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
            +   +  KA  A+   +PL   D+    P   +V+I+I +  +CH+D +    +    +
Sbjct: 16  YKKAGLKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTV 75

Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           +PC+ GHE  G V +VG+ V +  PGD V + C    C+ C+ C+ G  N C        
Sbjct: 76  YPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYC-------- 127

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTST---FSQYTVVHDVSVAKI-DPQAPLDKVCLLGC 177
                       + N           T   +SQ  VVH+  V +I  PQ  L  V  L C
Sbjct: 128 -------DHMTGTYNSP--TPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLC 178

Query: 178 GVPTGLGAVWN---TAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKK 231
              T     ++     +  PG  V V G+G +G + + + A A GA  V+       K
Sbjct: 179 AGIT----TYSPLRHWQAGPGKKVGVVGIGGLGHMGI-KLAHAMGA-HVVAFTTSEAK 230

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score =  106 bits (266), Expect = 3e-27
 Identities = 59/237 (24%), Positives = 93/237 (39%), Gaps = 41/237 (17%)

Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           +      A + +  L   +         +VR K+L+  +CH+D ++        ++P + 
Sbjct: 15  VKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPLVP 74

Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE  G V  VG  V +V  GD V + C    C  C+ C +   N C             
Sbjct: 75  GHEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYC------------- 121

Query: 127 NDRKSRFSINGKPIYHFMGTST---FSQYTVVHDVSVAKIDPQAPLDKVCLLGC-GVPT- 181
              K   +       +  GT T   +S + V ++  + +     PLD    L C G+   
Sbjct: 122 --PKMILTYASI---YHDGTITYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVY 176

Query: 182 ------GLGAVWNTAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKK 231
                 GL         EPG  + + GLG +G +AV + AKA G+ +V  I   P K
Sbjct: 177 SPLKYFGLD--------EPGKHIGIVGLGGLGHVAV-KFAKAFGS-KVTVISTSPSK 223

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score =  105 bits (264), Expect = 5e-27
 Identities = 65/232 (28%), Positives = 102/232 (43%), Gaps = 30/232 (12%)

Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           +  K    +  ++     D         +V I IL+  +CH+D ++   +  EG++P I 
Sbjct: 3   VQSKGFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMIP 62

Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE AGI++ VG+GV + + GD V + C+   C+ CK CK  +   C             
Sbjct: 63  GHEIAGIIKEVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFC------------- 109

Query: 127 NDRKSRFSINGKPIYHFMGTST---FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGL 183
              K  F+ +    +H         +S   VV +  V  +D  APL+KV  L C   T  
Sbjct: 110 --TKVVFTYDCLDSFH-DNEPHMGGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGIT-- 164

Query: 184 GAVWN---TAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKK 231
              ++    +KV  G+ V V G G +G +AV + A A GA  V     +  K
Sbjct: 165 --TYSPLKFSKVTKGTKVGVAGFGGLGSMAV-KYAVAMGA-EVSVFARNEHK 212

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score =  103 bits (259), Expect = 3e-26
 Identities = 61/242 (25%), Positives = 87/242 (35%), Gaps = 37/242 (15%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M             A +P+  L      +      +V I+I+   +CHTD +        
Sbjct: 1   MGIMEAERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGM 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGA 119
             +P + GHE  G V  VG  V++   GD V + C    C  C  C+      C      
Sbjct: 61  SNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYC------ 114

Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTST---FSQYTVVHDVSVAKIDPQAPLDKVCLLG 176
                     K  +S N     +  G  T   F++ TVVH   V KI     +++   L 
Sbjct: 115 ---------PKKIWSYNDV---YINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLL 162

Query: 177 CGVPTGLGAV------WNTAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDP 229
           C   T    V      +   +  PG    + GLG VG + V + AKA G   V  I    
Sbjct: 163 CAGVT----VYSPLSHFGLKQ--PGLRGGILGLGGVGHMGV-KIAKAMGH-HVTVISSSN 214

Query: 230 KK 231
           KK
Sbjct: 215 KK 216

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score = 97.3 bits (243), Expect = 4e-24
 Identities = 58/219 (26%), Positives = 90/219 (41%), Gaps = 31/219 (14%)

Query: 11  KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL-FPCIL 67
           +A V      P  L + D+ V  P   EVR+++   AL H D +   G     L  P +L
Sbjct: 2   RAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVL 61

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC--GKVRGATGAGVM 125
           G + +G+V++VG GV    PGD V+      C  C+ C +G+ NLC   ++ G    G  
Sbjct: 62  GADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHG-- 119

Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
                                 T+++Y V+ + ++A        ++   +     T    
Sbjct: 120 ----------------------TYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQM 157

Query: 186 VWNTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVI 223
           V +   V PG  V V      V +A  + AK  GA RVI
Sbjct: 158 VVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVI 195

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score = 98.0 bits (244), Expect = 8e-24
 Identities = 38/239 (15%), Positives = 77/239 (32%), Gaps = 44/239 (18%)

Query: 17  EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG--------------- 61
           +  K L + +V +      EV + ++ +++ +   ++   +                   
Sbjct: 45  DVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQGGWAT 104

Query: 62  ---LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRG 118
                  +LG + +G+V   G GV   +PGDHVI  + A   E +    G   L  + R 
Sbjct: 105 RHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVI-VHPAHVDEQEPATHGDGMLGTEQRA 163

Query: 119 ATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 178
                             G            ++Y VV    +         ++  +    
Sbjct: 164 WGFETN-----------FG----------GLAEYGVVRASQLLPKPAHLTWEEAAVSPLC 202

Query: 179 VPTGLGAV--WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
             T    +     A+++ G IV ++G  G +G    +  K  G    + +    +K   
Sbjct: 203 AGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQKEAA 260

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 92.3 bits (230), Expect = 4e-22
 Identities = 45/213 (21%), Positives = 77/213 (36%), Gaps = 55/213 (25%)

Query: 17  EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK---DPEGLFPCILGHEAAG 73
           +P K + ++++++A  +  +VR+K+L   +  +D     G     PE   P + G+E   
Sbjct: 37  DPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPE--LPAVGGNEGVA 94

Query: 74  IVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRF 133
            V +VG  VT ++PGD VIP                                        
Sbjct: 95  QVVAVGSNVTGLKPGDWVIPA--------------------------------------- 115

Query: 134 SINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVE 193
                      G  T+    V  + ++ ++    PL     LG    T    + +  +++
Sbjct: 116 ---------NAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQ 166

Query: 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI 225
           PG  V        VG AV + A A G  R I +
Sbjct: 167 PGDSVIQNASNSGVGQAVIQIAAALGL-RTINV 198

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score = 91.8 bits (229), Expect = 5e-22
 Identities = 53/240 (22%), Positives = 83/240 (34%), Gaps = 34/240 (14%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           MS   +     A  + E  K          P    ++ IKI    +C +D +  +G    
Sbjct: 1   MSYPEKF-EGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGN 59

Query: 61  GLFPCILGHEAAGIVESVGEGV-TEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRG 118
              P ++GHE  G V  +G    + ++ G  V +      C EC  CK+     C     
Sbjct: 60  MKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYC----- 114

Query: 119 ATGAGVMMNDRKSRFSINGKPIYHFMGTST---FSQYTVVHDVSVAKIDPQAPLDKVCLL 175
                      K   + +     +  G  +   ++ Y  VH+  V  I    P      L
Sbjct: 115 ----------TKFVTTYSQP---YEDGYVSQGGYANYVRVHEHFVVPIPENIPSHLAAPL 161

Query: 176 GCGVPTGLGAVWN---TAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKK 231
            CG  T    V++        PG  V + GLG +G +     +KA GA     I    +K
Sbjct: 162 LCGGLT----VYSPLVRNGCGPGKKVGIVGLGGIGSMGT-LISKAMGA-ETYVISRSSRK 215

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score = 89.6 bits (223), Expect = 3e-21
 Identities = 46/203 (22%), Positives = 73/203 (35%), Gaps = 27/203 (13%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL-FPCILGHEAAGIVESVGE 80
           L + +  V      ++ ++ L  +L + D           L FP +   + +G+VE+VG+
Sbjct: 41  LKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGK 100

Query: 81  GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPI 140
            VT  +PGD VI  +     +     +G+T    +  G    GV                
Sbjct: 101 SVTRFRPGDRVISTFAPGWLDGLRPGTGRTPA-YETLGGAHPGV---------------- 143

Query: 141 YHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAV 200
                    S+Y V+ +             +   L C   T   A+     +  G  V V
Sbjct: 144 --------LSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVV 195

Query: 201 FGLGTVGLAVAEGAKAAGASRVI 223
            G G V L   + AKA GA  VI
Sbjct: 196 QGTGGVALFGLQIAKATGA-EVI 217

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score = 89.1 bits (221), Expect = 1e-20
 Identities = 40/257 (15%), Positives = 78/257 (30%), Gaps = 47/257 (18%)

Query: 2   STEGQVITCKAAVAWE---PNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK- 57
           +         A +      P K + ++DV V     GE  + ++ +++ +   +T   + 
Sbjct: 35  TVHKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEP 94

Query: 58  -----------------DPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECR 100
                                L   ++G + AG+V   G GV   Q GD V+    +   
Sbjct: 95  LSTFGFLERYGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVEL 154

Query: 101 ECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV 160
           E          +    +   G                            ++  +V    +
Sbjct: 155 ESSDG--HNDTMLDPEQRIWGFE--------------------TNFGGLAEIALVKSNQL 192

Query: 161 AKIDPQAPLDKVCLLGCGVPTGLGAV--WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAA 217
                    ++    G    T    +   N A ++ G  V ++G  G +G    + A A 
Sbjct: 193 MPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAG 252

Query: 218 GASRVIGIDIDPKKFDR 234
           GA   I +   P+K + 
Sbjct: 253 GA-NPICVVSSPQKAEI 268

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score = 81.1 bits (201), Expect = 4e-18
 Identities = 40/226 (17%), Positives = 67/226 (29%), Gaps = 54/226 (23%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DP 59
           MS  G++I         P   L +E   + P +  EV +++L   +  +D    +G    
Sbjct: 1   MSLHGKLIQFHKF--GNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAH 58

Query: 60  EGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGA 119
               P I G+E  GIVE+VG  V+    G  V+P                          
Sbjct: 59  RIPLPNIPGYEGVGIVENVGAFVSRELIGKRVLP-------------------------L 93

Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 179
            G G                        T+ +Y       V  I           +    
Sbjct: 94  RGEG------------------------TWQEYVKTSADFVVPIPDSIDDFTAAQMYINP 129

Query: 180 PTGLGAVWNTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIG 224
            T       T  ++   ++ V      +G   A+ ++     R+I 
Sbjct: 130 LTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIA 174

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 76.3 bits (188), Expect = 2e-16
 Identities = 41/236 (17%), Positives = 61/236 (25%), Gaps = 59/236 (25%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
            A    + ++  V            +V +++   A+  +D    S +         LG +
Sbjct: 13  TALTVNDHDEVTVWNAAPCPMLPRDQVYVRVEAVAINPSD---TSMRGQFATPWAFLGTD 69

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
            AG V +VG  VT +Q GD V                      G                
Sbjct: 70  YAGTVVAVGSDVTHIQVGDRV---------------------YGAQNEMCP--------- 99

Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT--------- 181
                             FSQYTV      AKI      ++   L  G+ T         
Sbjct: 100 -----------RTPDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLG 148

Query: 182 -GLGAVWNTAKVEPGSIVAVF---GLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
             L +            V V    G         +  + +G    I     P  FD
Sbjct: 149 LPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGY-IPIAT-CSPHNFD 202

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 75.5 bits (186), Expect = 3e-16
 Identities = 37/255 (14%), Positives = 69/255 (27%), Gaps = 77/255 (30%)

Query: 7   VITCKAAVAWE---PNKPLVIEDVQVAPPQ--AGEVRIKILFTALCHTDAYTWSGK---- 57
           +IT +A +  +   P   L  +  ++        EV +K L + +  +D     G     
Sbjct: 1   MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSK 60

Query: 58  ------DPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTN 111
                           G+E    V  VG  V+ ++ GD VIP                  
Sbjct: 61  PAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPS----------------- 103

Query: 112 LCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA---- 167
                                           +   T+  + + +D    K+   A    
Sbjct: 104 -------------------------------HVNFGTWRTHALGNDDDFIKLPNPAQSKA 132

Query: 168 -------PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF--GLGTVGLAVAEGAKAAG 218
                   +++   +     T    + +  K+ PG    +   G   VG   ++  K   
Sbjct: 133 NGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLN 192

Query: 219 ASRVIGIDIDPKKFD 233
               I +  D    D
Sbjct: 193 F-NSISVIRDRPNLD 206

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 72.7 bits (179), Expect = 3e-15
 Identities = 44/209 (21%), Positives = 65/209 (31%), Gaps = 60/209 (28%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81
           L   +   A P   E++++     +   D Y  SG  P    P  LG EAAGIV  VG G
Sbjct: 16  LQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSG 75

Query: 82  VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIY 141
           V  ++ GD V                                                +Y
Sbjct: 76  VKHIKAGDRV------------------------------------------------VY 87

Query: 142 HFMGTSTFSQYTVVHDVSVAKIDPQAPLDKV--CLLGCGVPTGLGA---VWNTAKVEPGS 196
                  +S    +     A +      ++     L      GL     +  T +++P  
Sbjct: 88  AQSALGAYSSVHNIIADKAAILPAAISFEQAAASFL-----KGLTVYYLLRKTYEIKPDE 142

Query: 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIG 224
                   G VGL   + AKA GA ++IG
Sbjct: 143 QFLFHAAAGGVGLIACQWAKALGA-KLIG 170

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 71.5 bits (176), Expect = 6e-15
 Identities = 25/70 (35%), Positives = 32/70 (45%)

Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81
          L   D +   P    V ++     L   D Y  SG  P    P  LG E AG+VE+VG+ 
Sbjct: 16 LEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPSGLGAEGAGVVEAVGDE 75

Query: 82 VTEVQPGDHV 91
          VT  + GD V
Sbjct: 76 VTRFKVGDRV 85

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score = 71.5 bits (176), Expect = 8e-15
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG--KDPEGLFPCILG 68
           AAV  E N P V+  +    P  G+V ++I  +     DA   +G     +   P ILG
Sbjct: 9  IAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILG 68

Query: 69 HEAAGIVESVGEGVTEVQPGDHV 91
           + AG V +VG  V   + GD V
Sbjct: 69 MDLAGTVVAVGPEVDSFRVGDAV 91

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score = 71.1 bits (175), Expect = 9e-15
 Identities = 40/231 (17%), Positives = 65/231 (28%), Gaps = 73/231 (31%)

Query: 11  KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-----EGLF 63
           KA    +   P  L + D      +  ++ IK+   +L   D  T +G        +   
Sbjct: 8   KAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNL 67

Query: 64  PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAG 123
           P  LG++ +G V  +G  V  V  GD V                      G         
Sbjct: 68  PSGLGYDFSGEVIELGSDVNNVNIGDKV---------------------MGIAGFPDHPC 106

Query: 124 VMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP------QAPLDKVCLLGC 177
                                    +++Y      ++ +         QA          
Sbjct: 107 ------------------------CYAEYVCASPDTIIQK-LEKLSFLQA---------A 132

Query: 178 GVPTGLGAVWN---TAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIG 224
            +PT           A+V+ G +V +    G VG    + AK  G   VI 
Sbjct: 133 SLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVIT 182

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 70.7 bits (174), Expect = 2e-14
 Identities = 48/209 (22%), Positives = 72/209 (34%), Gaps = 59/209 (28%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81
           +  ED  V      E+ IK  +T + + ++Y   G  P    P +LG EA+G V + G+G
Sbjct: 23  IKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPCEK-PYVLGREASGTVVAKGKG 81

Query: 82  VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIY 141
           VT  + GD V                                                  
Sbjct: 82  VTNFEVGDQVA------------------------------------------------- 92

Query: 142 HFMGTSTFSQYTVVHDVS-VAKIDPQAPLDKVCLLGCGVPT-GLGA---VWNTAKVEPGS 196
            ++  STF+QY+ +     V K+ P+   D+   L        L A         V+ G 
Sbjct: 93  -YISNSTFAQYSKISSQGPVMKL-PKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGD 150

Query: 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIG 224
            V +F   G VGL + +  K  GA   I 
Sbjct: 151 YVLLFAAAGGVGLILNQLLKMKGA-HTIA 178

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 68.8 bits (169), Expect = 7e-14
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG---KDPEGLFPCILGHEAAGIVESV 78
           V E+V+V  P  G+VR++     +   D Y  +G       G  P ++G EAA +VE V
Sbjct: 16 FVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEV 75

Query: 79 GEGVTEVQPGDHV 91
          G GVT+   G+ V
Sbjct: 76 GPGVTDFTVGERV 88

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score = 68.0 bits (167), Expect = 1e-13
 Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 3/84 (3%)

Query: 11 KAAVAWE---PNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
          +    W        + +  V +    A ++ ++     +   D               + 
Sbjct: 3  EQHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINWSNGHVP 62

Query: 68 GHEAAGIVESVGEGVTEVQPGDHV 91
          G + AG++  VG  V     G  V
Sbjct: 63 GVDGAGVIVKVGAKVDSKMLGRRV 86

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 66.8 bits (164), Expect = 3e-13
 Identities = 45/219 (20%), Positives = 68/219 (31%), Gaps = 57/219 (26%)

Query: 11  KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCI 66
           KA  A   + P  LV  DV+        V + +    +C  D     G+        P +
Sbjct: 23  KAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEP-PFV 81

Query: 67  LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
            G E AG+V S  EG + ++PGD V+                              G   
Sbjct: 82  PGIETAGVVRSAPEG-SGIKPGDRVM-------------------------AFNFIG--- 112

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
                                 +++   V   ++    PQ    +   L     T   A 
Sbjct: 113 ---------------------GYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAY 151

Query: 187 WNTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIG 224
               ++  G  V V G  G +G A  + AK  GA +VI 
Sbjct: 152 ARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIA 189

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 66.5 bits (163), Expect = 5e-13
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCI 66
          +A V         L +    +  PQ GE++I++    L   D     G   +P    P +
Sbjct: 5  RAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKT-PLV 63

Query: 67 LGHEAAGIVESVGEGVTEVQPGDHVI 92
           G E +GIVE++G+ V   + GD V+
Sbjct: 64 PGFECSGIVEALGDSVKGYEIGDRVM 89

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score = 66.1 bits (162), Expect = 6e-13
 Identities = 36/230 (15%), Positives = 61/230 (26%), Gaps = 60/230 (26%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
             +  Q +              +  D  V  P  G++ ++  F  +  +D    +G+   
Sbjct: 20  FQSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDP 79

Query: 61  G-LFPCILGHEAAGIVESVGEGVTE-VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRG 118
               P  +G E  G V ++G   +     G  V                           
Sbjct: 80  SVKPPFDIGFEGIGEVVALGLSASARYTVGQAVA-------------------------- 113

Query: 119 ATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 178
                                   +M   +F++YTVV       +    P      L   
Sbjct: 114 ------------------------YMAPGSFAEYTVVPASIATPVPSVKPE----YLTLL 145

Query: 179 VP--TGLGAVWNTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGI 225
           V   T   ++     +  G  V V    G  G    + +K A    VIG 
Sbjct: 146 VSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGT 194

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 65.3 bits (160), Expect = 1e-12
 Identities = 41/209 (19%), Positives = 73/209 (34%), Gaps = 61/209 (29%)

Query: 23  VIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCILGHEAAGIVESVGE 80
           +  D+ V  P+  +V IK+    +   + Y  SG       L P   G + AG++E+VG+
Sbjct: 46  LRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLL-PYTPGSDVAGVIEAVGD 104

Query: 81  GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPI 140
             +  + GD V                             G                   
Sbjct: 105 NASAFKKGDRVF--------------------TSSTIS--GG------------------ 124

Query: 141 YHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW----NTAKVEPGS 196
                   +++Y +  D +V K+  +    +    G  +       +    ++A V+ G 
Sbjct: 125 --------YAEYALAADHTVYKLPEKLDFKQ----GAAIGIPYFTAYRALIHSACVKAGE 172

Query: 197 IVAVFG-LGTVGLAVAEGAKAAGASRVIG 224
            V V G  G VGLA  + A+A G  +++G
Sbjct: 173 SVLVHGASGGVGLAACQIARAYGL-KILG 200

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 19/75 (25%), Positives = 37/75 (49%)

Query: 17  EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVE 76
             +  L+  ++    P   ++ +++   ++   D        P+G    ++G++AAGIV 
Sbjct: 35  TDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWKVIGYDAAGIVS 94

Query: 77  SVGEGVTEVQPGDHV 91
           +VG  VT  +PGD V
Sbjct: 95  AVGPDVTLFRPGDEV 109

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score = 60.7 bits (148), Expect = 4e-11
 Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 11  KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCI 66
           +         P  +VI    +     GEV ++     +   D     G    P+     I
Sbjct: 30  RFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDA-SPI 88

Query: 67  LGHEAAGIVESVGEGVTEVQPGDHVI 92
           LG E +G +  VG GV+    GD V 
Sbjct: 89  LGLELSGEIVGVGPGVSGYAVGDKVC 114

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score = 60.0 bits (146), Expect = 7e-11
 Identities = 29/228 (12%), Positives = 53/228 (23%), Gaps = 59/228 (25%)

Query: 5   GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGL 62
           G   T   +        L    + V  P   +V IK+   ++  +D     G+   P   
Sbjct: 20  GYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVK 79

Query: 63  FPCILGHEAAGIVESVGEGV-TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
                G E  G + + G+    +   G  V                          G + 
Sbjct: 80  -GRPAGFEGVGTIVAGGDEPYAKSLVGKRVAF----------------------ATGLSN 116

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G                        ++++Y V    +   +      +     G  +  
Sbjct: 117 WG------------------------SWAEYAVAEAAACIPLLDTVRDED----GAAMIV 148

Query: 182 GLGAVWN---TAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGI 225
                       K E      +      +   +   AK  G  R I  
Sbjct: 149 NPLTAIAMFDIVKQEGEKAFVMTAGASQLCKLIIGLAKEEGF-RPIVT 195

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 8  ITCKAAVAWEP-----NKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
          ++ KA    +P            ++ +  P+  E+ +KI   ++   D         +  
Sbjct: 1  MSLKAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMDVSK-- 58

Query: 63 FPCILGHEAAGIVESVGEGVTEVQPGDHV 91
           P +LG +A G+VESVG  VT    GD V
Sbjct: 59 APRVLGFDAIGVVESVGNEVTMFNQGDIV 87

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 57.4 bits (139), Expect = 9e-10
 Identities = 28/71 (39%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81
           LV E    AP   GEVRI +    +   DA    G  P       LG E AG+V   G G
Sbjct: 226 LVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYPG---VASLGSEGAGVVVETGPG 282

Query: 82  VTEVQPGDHVI 92
           VT + PGD V+
Sbjct: 283 VTGLAPGDRVM 293

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 19/100 (19%)

Query: 11  KAAVAWEPNKPLVI---EDVQV-APPQAGEVRIKILFTALCHTDAYTWSGKDPEGL---- 62
            A V  +  K  V+   +++ +       EV +K+   ++   D    SG     L    
Sbjct: 23  MAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKR 82

Query: 63  -----------FPCILGHEAAGIVESVGEGVTEVQPGDHV 91
                      FP  LG + +G+V   G  V   +PGD V
Sbjct: 83  DPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEV 122

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 53.8 bits (130), Expect = 9e-09
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 11  KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCI 66
            A    +P  P  L +++V    P  GEV +K+  +AL   D     G+   P G    I
Sbjct: 24  LAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGA-SNI 82

Query: 67  LGHEAAGIVESVGEGV-TEVQPGDHV 91
           LG EA+G V  +G G     + GD  
Sbjct: 83  LGLEASGHVAELGPGCQGHWKIGDTA 108

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 53.0 bits (127), Expect = 2e-08
 Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 29/99 (29%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG--------------------KDPEG 61
           L ++ +    P   EV I+I  + L  +D     G                    + PEG
Sbjct: 20  LSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEG 79

Query: 62  LF---------PCILGHEAAGIVESVGEGVTEVQPGDHV 91
                         +G+E AG+V   G            
Sbjct: 80  AMRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKT 118

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 36/220 (16%), Positives = 56/220 (25%), Gaps = 72/220 (32%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCILG 68
           KA V      PL + D+     + GEV +++    L   D     G         P I G
Sbjct: 2   KAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHP-PFIPG 60

Query: 69  HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
            E  G+VE           G                                  G     
Sbjct: 61  MEVVGVVE-----------GRRYA-------------------------ALVPQG----- 79

Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
                                ++   V   ++  +      ++        P      + 
Sbjct: 80  -------------------GLAERVAVPKGALLPLPEGLSPEE----AAAFPVSFLTAYL 116

Query: 189 ---TAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIG 224
               A+  PG  V V    G +G A  + A+A G  RV+ 
Sbjct: 117 ALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLA 155

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* Length = 144

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
            AV GLG  G ++ +     G   V+ +DI+ +K + 
Sbjct: 9   FAVIGLGRFGGSIVKELHRMGHE-VLAVDINEEKVNA 44

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} Length = 141

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
             V G    G+ +     AAG  +V+ +D   +K + 
Sbjct: 9   YIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIEL 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	239
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	100.0
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	100.0
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	99.98
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	99.98
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	99.97
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	99.96
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.96
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	99.95
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.81
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.21
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.6
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.12
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	96.93
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	96.88
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	96.87
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	96.82
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	96.8
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.71
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	96.66
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	96.65
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	96.65
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	96.59
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	96.56
2b25_A	336	Hypothetical protein; structural genomics, methyl	96.44
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.01
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.78
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.73
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.68
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	95.66
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	95.62
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	95.61
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	95.6
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	95.54
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	95.45
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	95.44
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	95.44
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	95.41
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	95.34
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	95.32
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	95.32
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	95.23
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	95.15
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	95.12
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	95.12
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	95.09
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	95.08
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	95.06
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	95.06
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	95.05
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	95.03
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	95.02
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.02
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	94.96
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	94.94
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	94.85
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	94.82
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	94.8
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	94.79
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	94.71
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	94.7
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	94.69
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	94.69
4dqx_A	277	Probable oxidoreductase protein; structural genomi	94.68
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	94.63
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	94.59
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	94.58
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.55
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	94.53
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	94.49
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	94.47
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	94.41
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	94.37
3rih_A	293	Short chain dehydrogenase or reductase; structural	94.36
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	94.3
3cxt_A	291	Dehydrogenase with different specificities; rossma	94.29
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	94.23
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	94.22
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	94.21
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	94.2
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	94.14
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	94.14
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	94.13
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	94.1
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	94.07
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	94.0
1xhl_A	297	Short-chain dehydrogenase/reductase family member	93.98
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	93.97
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	93.93
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	93.91
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	93.73
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	93.63
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	93.62
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	93.58
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	93.57
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	93.5
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	93.4
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	93.35
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	93.21
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	93.16
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	93.14
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	93.14
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	93.03
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	93.0
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	92.93
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	92.93
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	92.89
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	92.87
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	92.82
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	92.71
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	92.66
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	92.66
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	92.64
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	92.47
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	92.45
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.43
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	92.42
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.28
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	92.27
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	92.26
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	92.12
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	92.06
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	92.04
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	92.03
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	91.96
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	91.96
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	91.88
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	91.68
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	91.62
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	91.62
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	91.51
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	91.49
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	91.35
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	90.83
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	90.83
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	90.78
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	90.7
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	90.67
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	90.6
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	90.56
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	90.55
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	90.49
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	90.43
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	90.41
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	90.35
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	90.34
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	90.21
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	90.19
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	90.19
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	90.15
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	90.13
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	89.99
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	89.84
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	89.77
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	89.74
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	89.52
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	89.48
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	89.38
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	89.29
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	89.25
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	89.21
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	89.11
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	88.87
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	88.86
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	88.86
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	88.79
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	88.76
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	88.7
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	88.6
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	88.55
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	88.52
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	88.5
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	88.47
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	88.47
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	88.43
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	88.42
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	88.39
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	88.3
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	88.25
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	88.16
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	88.04
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	88.02
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	88.01
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	87.93
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	87.77
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	87.45
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	87.27
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	87.18
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	87.1
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	87.08
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	87.08
3l07_A	285	Bifunctional protein fold; structural genomics, ID	87.01
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	86.96
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	86.85
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	86.74
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	86.71
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	86.7
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	86.65
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	86.64
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	86.64
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	86.63
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	86.62
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	86.59
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	86.47
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	86.32
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	86.29
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	86.28
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	86.27
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	86.2
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	86.13
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	86.0
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	85.97
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	85.91
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	85.81
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	85.63
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	85.6
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	85.55
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	85.51
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	85.29
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	85.25
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	85.23
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	85.1
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	85.05
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	84.94
2bry_A	497	NEDD9 interacting protein with calponin homology a	84.87
4f6c_A	427	AUSA reductase domain protein; thioester reductase	84.81
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	84.79
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	84.78
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	84.78
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	84.76
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	84.72
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	84.69
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	84.68
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	84.68
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	84.67
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	84.62
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	84.61
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	84.44
3on5_A	362	BH1974 protein; structural genomics, joint center	84.39
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	84.34
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	84.2
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	84.19
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	84.14
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	84.04
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	84.02
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	83.97
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	83.79
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	83.58
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	83.31
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	83.24
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	82.91
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	82.81
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	82.64
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	82.06
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	82.06
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	81.98
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	81.94
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	81.89
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	81.8
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	81.76
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	81.64
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	81.6
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	81.27
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	81.24
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	81.17
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	80.89
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	80.81
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	80.78
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	80.73
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	80.57
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	80.42
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	80.41
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	80.1
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	80.09
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	80.03

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=4.6e-47  Score=336.79  Aligned_cols=235  Identities=91%  Similarity=1.454  Sum_probs=215.7

Q ss_pred             CCcccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCC
Q 026414            4 EGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT   83 (239)
Q Consensus         4 ~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~   83 (239)
                      ...|++|||+++++++++++++|+|.|+|++|||||||++++||++|++.+.|..+...+|.++|||++|+|+++|++++
T Consensus         3 ~~~~~tmkA~v~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~v~   82 (378)
T 3uko_A            3 QGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT   82 (378)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             cccceeeEEEEEecCCCccEEEEecCCCCCCCeEEEEEEEeecCHHHHHHhcCCCCCCCCCccCCccceEEEEEeCCCCC
Confidence            36789999999999998999999999999999999999999999999999999877668899999999999999999999


Q ss_pred             CCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEec
Q 026414           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (239)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  163 (239)
                      +|++||||++.+..+|+.|.+|++++.+.|.+.......|....+|...+..+|...++..+.|+|+||+++|.+.++++
T Consensus        83 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~i  162 (378)
T 3uko_A           83 EVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKI  162 (378)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEEC
T ss_pred             cCCCCCEEEEecCCCCCCChhhhCcCcCcCcCcccccccccccccCccccccCCcccccccCCcceEeEEEechhheEEC
Confidence            99999999999999999999999999999998654333454445666667778888888888899999999999999999


Q ss_pred             CCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      |+++++++|+.+++++.|||+++.+..++++|++|||+|+|++|++++|+|+++|+++|++++++++|+++++++
T Consensus       163 P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~l  237 (378)
T 3uko_A          163 DPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF  237 (378)
T ss_dssp             CTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTT
T ss_pred             CCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc
Confidence            999999999999999999999988899999999999999999999999999999998899999999999988753

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=6.2e-46  Score=328.92  Aligned_cols=234  Identities=56%  Similarity=0.974  Sum_probs=203.3

Q ss_pred             CCCCCcccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCC
Q 026414            1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGE   80 (239)
Q Consensus         1 m~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~   80 (239)
                      |++.++|++|||+++++++++++++|+|.|+|++|||||||++++||++|++++.|.++ ..+|.++|||++|+|+++|+
T Consensus         1 ~~~~~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~   79 (373)
T 1p0f_A            1 MCTAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP-SKFPVILGHEAVGVVESIGA   79 (373)
T ss_dssp             -CCTTSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCCEEEEEEEECT
T ss_pred             CcccCCcceeEEEEEEcCCCCeeEEEeeCCCCCCCeEEEEEeEEeecchhHHHhcCCCC-CCCCcccCcCceEEEEEECC
Confidence            89899999999999999987799999999999999999999999999999999998765 46899999999999999999


Q ss_pred             CCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEeccee
Q 026414           81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV  160 (239)
Q Consensus        81 ~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  160 (239)
                      ++++|++||||++.+..+|++|.+|++++.+.|.+.......|.. .+|..++..+|...+++...|+|+||+++|.+.+
T Consensus        80 ~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~  158 (373)
T 1p0f_A           80 GVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLM-ADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAV  158 (373)
T ss_dssp             TCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSC-TTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSE
T ss_pred             CCCccCCCCEEEECCCCCCCCChhhcCCCcCcCcCCCcccccccc-cCCccccccCCcccccccCCccceeEEEEchhhE
Confidence            999999999999999999999999999999999976432111322 2222222223333444445679999999999999


Q ss_pred             EecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       161 ~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++|++++++ ||.+++++.|||+++.+..++++|++|||+|+|++|++++|+|+++|+++|++++++++|++++++
T Consensus       159 ~~iP~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  234 (373)
T 1p0f_A          159 AKIDPKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE  234 (373)
T ss_dssp             EEECTTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             EECCCCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            9999999999 999999999999988888999999999999999999999999999998789999999999998865

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=6.8e-45  Score=322.12  Aligned_cols=232  Identities=68%  Similarity=1.109  Sum_probs=200.5

Q ss_pred             CcccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCC
Q 026414            5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE   84 (239)
Q Consensus         5 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~   84 (239)
                      .+|++|||+++++++++++++++|.|+|++|||||||++++||++|++++.|..+...+|.++|||++|+|+++|+++++
T Consensus         2 ~~p~~mkA~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~   81 (373)
T 2fzw_A            2 NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVTK   81 (373)
T ss_dssp             CCCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             CCccceEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEEEEchhhHHHhcCCCCCCCCCccccccccEEEEEECCCCCC
Confidence            57899999999999877999999999999999999999999999999999987665568999999999999999999999


Q ss_pred             CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (239)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p  164 (239)
                      |++||||++.+..+|++|.+|++++.+.|.+.......|.. .+|..++...|..++++...|+|+||+++|.+.++++|
T Consensus        82 ~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP  160 (373)
T 2fzw_A           82 LKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLM-PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKID  160 (373)
T ss_dssp             CCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCC-TTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECC
T ss_pred             CCCCCEEEECCCCCCCCChHHcCcCcccCCCcccccccccc-cCCcccccccccccccccCCccceeEEEEchhheEECC
Confidence            99999999999999999999999999999865310001211 22222222233344444456799999999999999999


Q ss_pred             CCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++++++|+.+++++.|||+++.+..++++|++|||+|+|++|++++|+|+++|+.+|++++++++|++++++
T Consensus       161 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~  233 (373)
T 2fzw_A          161 PLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE  233 (373)
T ss_dssp             TTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            9999999999999999999988888999999999999999999999999999998789999999999988864

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.1e-44  Score=319.13  Aligned_cols=233  Identities=59%  Similarity=1.031  Sum_probs=201.2

Q ss_pred             CCCcccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhh-hhcCCCCCCCCCeeeeeeEEEEEEEeCCC
Q 026414            3 TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAY-TWSGKDPEGLFPCILGHEAAGIVESVGEG   81 (239)
Q Consensus         3 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~   81 (239)
                      +..+|++|||+++++++++++++++|.|+|++|||||||++++||++|++ .+.|..+ ..+|.++|||++|+|+++|++
T Consensus         2 ~~~~~~~mka~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~   80 (374)
T 1cdo_A            2 TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK-DGFPVVLGHEGAGIVESVGPG   80 (374)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT-TSCSEECCCCEEEEEEEECTT
T ss_pred             CCCCcceeEEEEEecCCCCeEEEEeeCCCCCCCEEEEEEeEEeechhhHHHHhCCCCC-CCCCcccCccceEEEEEECCC
Confidence            34678999999999998779999999999999999999999999999999 8888765 468999999999999999999


Q ss_pred             CCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeE
Q 026414           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA  161 (239)
Q Consensus        82 v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  161 (239)
                      +++|++||||++.+..+|+.|.+|++++.+.|.+.......|.. .+|..++..+|..++++...|+|+||+++|.+.++
T Consensus        81 V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~  159 (374)
T 1cdo_A           81 VTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVM-SPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVA  159 (374)
T ss_dssp             CCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTT-SCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEE
T ss_pred             CccCCCCCEEEeCCCCCCCCChhhcCCCcCcCCCcccccccccc-cCCccccccCCcccccccCCccceeEEEEchhheE
Confidence            99999999999999999999999999999999975431111221 22222222233344444455799999999999999


Q ss_pred             ecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       162 ~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++|+++++++|+.+++++.|||+++.+..++++|++|||+|+|++|++++|+|+++|+.+|++++++++|++++++
T Consensus       160 ~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  235 (374)
T 1cdo_A          160 KIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV  235 (374)
T ss_dssp             ECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             ECCCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            9999999999999999999999988888999999999999999999999999999998789999999999998864

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=2.5e-44  Score=318.93  Aligned_cols=231  Identities=55%  Similarity=0.981  Sum_probs=198.5

Q ss_pred             CcccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCC
Q 026414            5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE   84 (239)
Q Consensus         5 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~   84 (239)
                      .+|++||++++++++++++++++|.|+|++|||||||++++||++|++.+.|. +...+|.++|||++|+|+++|+++++
T Consensus         4 ~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~-~~~~~P~v~GhE~~G~V~~vG~~v~~   82 (376)
T 1e3i_A            4 GKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPK-KKALFPVVLGHECAGIVESVGPGVTN   82 (376)
T ss_dssp             TSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTT-SCCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             CCChheeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEeEEeEchhhHHHhcCC-CCCCCCcccCccccEEEEEECCCCcc
Confidence            67899999999999877999999999999999999999999999999999886 44468999999999999999999999


Q ss_pred             CCCCCEEeecCccCCCCCccccCCCCCCCCCcC----CCCCCceeccCCccccccCCcceeeecCCcceeeeEEEeccee
Q 026414           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR----GATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV  160 (239)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~----~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  160 (239)
                      |++||||++.+..+|++|.+|++++.+.|.+..    .....|.. .+|..++..+|...+++...|+|+||+++|.+.+
T Consensus        83 ~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~  161 (376)
T 1e3i_A           83 FKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELM-EDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANL  161 (376)
T ss_dssp             CCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSC-TTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGE
T ss_pred             CCCCCEEEECCcCCCCCCccccCCCcccCcCcCcccccccccccc-ccCccccccCCcccccccCCccceeEEEeccccE
Confidence            999999999999999999999999999998754    10001211 1222222222333334444579999999999999


Q ss_pred             EecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       161 ~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++|+++++++|+.+++++.|||+++.+..++++|++|||+|+|++|++++|+|+++|+.+|++++++++|++++++
T Consensus       162 ~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  238 (376)
T 1e3i_A          162 ARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA  238 (376)
T ss_dssp             EECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             EECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            99999999999999999999999988888999999999999999999999999999998789999999999998864

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=3.4e-44  Score=317.80  Aligned_cols=231  Identities=56%  Similarity=0.945  Sum_probs=199.4

Q ss_pred             CcccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCC
Q 026414            5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE   84 (239)
Q Consensus         5 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~   84 (239)
                      ..|++|||+++++++++++++++|.|+|++|||||||++++||++|++++.|..+. .+|.++|||++|+|+++|+++++
T Consensus         4 ~~~~~mkA~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~P~v~GhE~~G~V~~vG~~v~~   82 (374)
T 2jhf_A            4 GKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT-PLPVIAGHEAAGIVESIGEGVTT   82 (374)
T ss_dssp             TSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-CSSBCCCCSEEEEEEEECTTCCS
T ss_pred             CCceeEEEEEEecCCCceEEEEccCCCCCCCeEEEEEeEEeechhhHHHHcCCCCC-CCCcccCcCceEEEEEECCCCCC
Confidence            46889999999999877999999999999999999999999999999999987654 37999999999999999999999


Q ss_pred             CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (239)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p  164 (239)
                      |++||||++.+..+|++|.+|++++.+.|.+.......|.. .+|..++...|...+++...|+|+||+++|.+.++++|
T Consensus        83 ~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP  161 (374)
T 2jhf_A           83 VRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKID  161 (374)
T ss_dssp             CCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSC-TTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEECC
T ss_pred             CCCCCEEEECCCCCCCCCccccCCCcCcCCCCccccccccc-cCCcccccccccccccccCCccCeeEEEEchHHeEECC
Confidence            99999999999999999999999999999976432111221 12222222223333444445799999999999999999


Q ss_pred             CCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++++++|+.+++++.|||+++.+..++++|++|||+|+|++|++++|+|+++|+.+|++++++++|++++++
T Consensus       162 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  234 (374)
T 2jhf_A          162 AASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE  234 (374)
T ss_dssp             TTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            9999999999999999999988888999999999999999999999999999998789999999999988864

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.1e-42  Score=307.87  Aligned_cols=228  Identities=32%  Similarity=0.582  Sum_probs=190.7

Q ss_pred             ccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414            7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (239)
Q Consensus         7 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~   86 (239)
                      +++||++++++++++++++|+|.|+|++|||||||++++||++|++++.|.++ ..+|.++|||++|+|+++|+++++|+
T Consensus         4 ~~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~v~~~~   82 (371)
T 1f8f_A            4 LKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYP-VPLPAVLGHEGSGIIEAIGPNVTELQ   82 (371)
T ss_dssp             CEEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCEEEEEEEEECTTCCSCC
T ss_pred             cccceEEEEcCCCCCeEEEEecCCCCCCCEEEEEEEEeecCchhHHHHcCCCC-CCCCcccCcccceEEEEeCCCCCCCC
Confidence            56799999999987799999999999999999999999999999999998754 35799999999999999999999999


Q ss_pred             CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccc-cCCcce-eeecCCcceeeeEEEecceeEecC
Q 026414           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFS-INGKPI-YHFMGTSTFSQYTVVHDVSVAKID  164 (239)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~-~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~p  164 (239)
                      +||||++.+ .+|++|.+|++++.+.|.+.......|.. .+|...+. .+|... ++....|+|+||+++|.+.++++|
T Consensus        83 ~GdrV~~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~-~~g~~~~~~~~g~~~~~~~~~~G~~aey~~v~~~~~~~iP  160 (371)
T 1f8f_A           83 VGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGAD-SEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVT  160 (371)
T ss_dssp             TTCEEEECC-CCCSSSHHHHTTCGGGCTTHHHHSSSSSC-SSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEEC
T ss_pred             CCCEEEecC-CCCCCChhhhCcCcccccccccccccccc-ccccccccccCCccccccccCCccccCeEEechhheEECC
Confidence            999999999 99999999999999999875410000100 01100000 000000 011234699999999999999999


Q ss_pred             CCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++++++|+.+++++.|||+++.+..++++|++|||+|+|++|++++|+|+++|+++|++++++++|++++++
T Consensus       161 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~  233 (371)
T 1f8f_A          161 KDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ  233 (371)
T ss_dssp             TTSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            9999999999999999999988888999999999999999999999999999999779999999999998864

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=8.6e-43  Score=307.43  Aligned_cols=210  Identities=30%  Similarity=0.381  Sum_probs=185.6

Q ss_pred             CcccceeEEEEecCCCCeEEEeecCCC-CCCCeEEEEEeEeeechhhhhhhcCCCC---CCCCCeeeeeeEEEEEEEeCC
Q 026414            5 GQVITCKAAVAWEPNKPLVIEDVQVAP-PQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGE   80 (239)
Q Consensus         5 ~~~~~~~a~~~~~~~~~~~~~~~~~p~-~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~vG~Vv~vG~   80 (239)
                      ..|++|||+++++++++++++|+|.|+ |++|||||||++++||++|++.+.|.++   ...+|.++|||++|+|+++|+
T Consensus        11 ~~~~~mka~~~~~~g~~l~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~   90 (359)
T 1h2b_A           11 LGVERLKAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAE   90 (359)
T ss_dssp             ------CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECT
T ss_pred             CChhhceEEEEecCCCCcEEEEccCCCCCCCCEEEEEEEEEEecccchHHHhCCCccccCCCCCeecCcCceEEEEEECC
Confidence            356789999999998679999999999 9999999999999999999999998754   336899999999999999999


Q ss_pred             CCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEeccee
Q 026414           81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV  160 (239)
Q Consensus        81 ~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  160 (239)
                      ++++|++||||+..+..+|++|.+|+.++.+.|.+...   .|.. .+|                  +|+||+++|.+.+
T Consensus        91 ~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~-~~G------------------~~aey~~v~~~~~  148 (359)
T 1h2b_A           91 GVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEF---PGLN-IDG------------------GFAEFMRTSHRSV  148 (359)
T ss_dssp             TCCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBC---BTTT-BCC------------------SSBSEEEECGGGE
T ss_pred             CCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCCCccc---cccC-CCC------------------cccceEEechHhE
Confidence            99999999999999999999999999999999997643   2322 334                  9999999999999


Q ss_pred             EecCCCCCchhhh---hcccccchhhhhhhhh-cCCCCCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCChhhHhhh
Q 026414          161 AKIDPQAPLDKVC---LLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       161 ~~~p~~~~~~~aa---~l~~~~~ta~~~~~~~-~~~~~g~~vlI~G~g~~g~~ai~~~~~~-G~~~vv~~~~~~~~~~~~  235 (239)
                      +++|+++++++|+   .+.+++.|||+++... .++++|++|||+|+|++|++++|+|+++ |+ +|++++++++|++++
T Consensus       149 ~~iP~~~~~~~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga-~Vi~~~~~~~~~~~~  227 (359)
T 1h2b_A          149 IKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPA-TVIALDVKEEKLKLA  227 (359)
T ss_dssp             EECCTTCCHHHHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCC-EEEEEESSHHHHHHH
T ss_pred             EECCCCCCHHHHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHH
Confidence            9999999999999   7888889999987554 8999999999999999999999999999 99 899999999999988


Q ss_pred             hh
Q 026414          236 FW  237 (239)
Q Consensus       236 ~~  237 (239)
                      ++
T Consensus       228 ~~  229 (359)
T 1h2b_A          228 ER  229 (359)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=1.5e-42  Score=304.51  Aligned_cols=215  Identities=27%  Similarity=0.374  Sum_probs=188.1

Q ss_pred             cceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (239)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~   87 (239)
                      ++|||+++.+++++++++|+|.|+|++|||||||++++||++|++.+.|..+...+|.++|||++|+|+++|+++++|++
T Consensus         3 m~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~V~~vG~~v~~~~v   82 (348)
T 3two_A            3 VQSKGFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMIPGHEIAGIIKEVGKGVKKFKI   82 (348)
T ss_dssp             EEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTSSSCCCSSBCCCCCEEEEEEEECTTCCSCCT
T ss_pred             eEEEEEEEccCCCCCeEEEeeCCCCCCCeEEEEEEEeeecccchhhhcCCCCCCCCCeecCcceeEEEEEECCCCCCCCC
Confidence            68999999999888999999999999999999999999999999999998776688999999999999999999999999


Q ss_pred             CCEEeecC-ccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414           88 GDHVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (239)
Q Consensus        88 Gd~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~  166 (239)
                      ||||++.+ ...|++|.+|+.++.+.|. ...   .|+. .+.        .........|+|+||+++|.+.++++|++
T Consensus        83 GdrV~~~~~~~~Cg~C~~C~~g~~~~c~-~~~---~~~~-~~~--------~~~~~~~~~G~~aey~~v~~~~~~~iP~~  149 (348)
T 3two_A           83 GDVVGVGCFVNSCKACKPCKEHQEQFCT-KVV---FTYD-CLD--------SFHDNEPHMGGYSNNIVVDENYVISVDKN  149 (348)
T ss_dssp             TCEEEECSEEECCSCSHHHHTTCGGGCT-TCE---ESSS-SEE--------GGGTTEECCCSSBSEEEEEGGGCEECCTT
T ss_pred             CCEEEEeCCcCCCCCChhHhCCCcccCc-ccc---cccc-ccc--------ccccCCcCCccccceEEechhhEEECCCC
Confidence            99998865 4799999999999999998 221   1111 000        00000122359999999999999999999


Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++++||.+++++.|||+++ ...++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|++++++
T Consensus       150 ~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~  218 (348)
T 3two_A          150 APLEKVAPLLCAGITTYSPL-KFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALS  218 (348)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHH
T ss_pred             CCHHHhhhhhhhHHHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHh
Confidence            99999999999999999977 56699999999999999999999999999999 99999999999998875

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=1.4e-42  Score=303.70  Aligned_cols=206  Identities=31%  Similarity=0.526  Sum_probs=188.8

Q ss_pred             ceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414            9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQP   87 (239)
Q Consensus         9 ~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~~   87 (239)
                      +|||+++++++++++++|+|.|+|++|||||||++++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|++
T Consensus         2 ~MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~~v   81 (340)
T 3s2e_A            2 MMKAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGYVSAVGSGVSRVKE   81 (340)
T ss_dssp             EEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECSSCCSCCT
T ss_pred             ceEEEEEecCCCCCEEEEccCCCCCCCeEEEEEEEeccCHHHHHHHcCCCCCCCCCCcccCCcceEEEEEECCCCCcCCC
Confidence            6999999998888999999999999999999999999999999999998654 468999999999999999999999999


Q ss_pred             CCEE-eecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414           88 GDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (239)
Q Consensus        88 Gd~V-~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~  166 (239)
                      |||| +.++...|+.|.+|.+++.+.|.+...   .|.. .+|                  +|+||+++|.+.++++|++
T Consensus        82 GdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~iP~~  139 (340)
T 3s2e_A           82 GDRVGVPWLYSACGYCEHCLQGWETLCEKQQN---TGYS-VNG------------------GYGEYVVADPNYVGLLPDK  139 (340)
T ss_dssp             TCEEEEESEEECCSSSHHHHTTCGGGCTTCEE---BTTT-BCC------------------SSBSEEEECTTTSEECCTT
T ss_pred             CCEEEecCCCCCCCCChHHhCcCcccCccccc---cCCC-CCC------------------cceeEEEechHHEEECCCC
Confidence            9999 567788999999999999999997653   2332 334                  9999999999999999999


Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      +++++|+.+++++.|||+++ ...++++|++|||+|+|++|++++|+++.+|+ +|++++++++|+++++++
T Consensus       140 ~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l  209 (340)
T 3s2e_A          140 VGFVEIAPILCAGVTVYKGL-KVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRL  209 (340)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HTTTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT
T ss_pred             CCHHHhhcccchhHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHc
Confidence            99999999999999999977 77899999999999999999999999999999 999999999999988653

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=4.3e-42  Score=304.20  Aligned_cols=207  Identities=26%  Similarity=0.384  Sum_probs=188.2

Q ss_pred             CcccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCC
Q 026414            5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE   84 (239)
Q Consensus         5 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~   84 (239)
                      ..|.+|||+++++++. ++++++|.|+|++|||||||++++||++|++.+.|.++ ..+|.++|||++|+|+++|+++++
T Consensus        19 ~~p~~mkA~v~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~-~~~p~v~G~e~~G~V~~vG~~v~~   96 (370)
T 4ej6_A           19 YFQSMMKAVRLESVGN-ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFP-STPPVTLGHEFCGIVVEAGSAVRD   96 (370)
T ss_dssp             --CCEEEEEEEEETTE-EEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSEECCCSEEEEEEEECTTCCS
T ss_pred             ccchheEEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEEeecHHHHHHHcCCCC-CCCCeecCcceEEEEEEECCCCCC
Confidence            4678899999999976 99999999999999999999999999999999998764 468999999999999999999999


Q ss_pred             CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (239)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p  164 (239)
                      |++||||++.+...|+.|.+|..++.+.|.+...   .|.. .+|                  +|+||+++|.+.++++|
T Consensus        97 ~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~~P  154 (370)
T 4ej6_A           97 IAPGARITGDPNISCGRCPQCQAGRVNLCRNLRA---IGIH-RDG------------------GFAEYVLVPRKQAFEIP  154 (370)
T ss_dssp             SCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEE---BTTT-BCC------------------SSBSEEEEEGGGEEEEC
T ss_pred             CCCCCEEEECCCCCCCCChHHhCcCcccCCCccc---cCCC-CCC------------------cceEEEEEchhhEEECC
Confidence            9999999999999999999999999999997654   2332 333                  99999999999999999


Q ss_pred             CCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++++++|+ +..++.|+|+++ ...++++|++|||+|+|++|++++|+|+++|+++|++++++++|++++++
T Consensus       155 ~~~~~~~aa-l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  225 (370)
T 4ej6_A          155 LTLDPVHGA-FCEPLACCLHGV-DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE  225 (370)
T ss_dssp             TTSCTTGGG-GHHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH
T ss_pred             CCCCHHHHh-hhhHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            999999998 556889999977 88999999999999999999999999999999899999999999998865

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=3.3e-42  Score=303.85  Aligned_cols=211  Identities=26%  Similarity=0.321  Sum_probs=186.0

Q ss_pred             CCCCCcccceeEEEEecCCCCeEEEeecCC--------CCCCCeEEEEEeEeeechhhhhhhcCCC---CCCCCCeeeee
Q 026414            1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVA--------PPQAGEVRIKILFTALCHTDAYTWSGKD---PEGLFPCILGH   69 (239)
Q Consensus         1 m~~~~~~~~~~a~~~~~~~~~~~~~~~~~p--------~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~~~~p~~~G~   69 (239)
                      |+. +.|++|||+++.+++. ++++++|.|        +|++|||||||++++||++|++++.+..   ....+|.++||
T Consensus         1 m~~-~~~~~mka~~~~~~~~-l~~~~~~~P~~~~~~~~~~~~~eVlVkv~a~gi~~~D~~~~~~~~~~~~~~~~p~v~G~   78 (363)
T 3m6i_A            1 MAS-SASKTNIGVFTNPQHD-LWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGH   78 (363)
T ss_dssp             -----CCSCCEEEEECTTCC-EEEEECSSCHHHHHHTCSCCTTEEEEEEEEEECCHHHHHHHHHSBSSSCBCCSCEECCC
T ss_pred             CCC-CCcccceeEEEeCCCc-EEEEEecCCccccccCCCcCCCeEEEEEeEEeecHhhHHHHcCCCCCCccCCCCcccCc
Confidence            443 4678999999998887 999999999        9999999999999999999999887321   22367999999


Q ss_pred             eEEEEEEEeCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcce
Q 026414           70 EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTF  149 (239)
Q Consensus        70 e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~  149 (239)
                      |++|+|+++|+++++|++||||++.+..+|++|.+|+.++.+.|.+...   .|....+|                  +|
T Consensus        79 E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~---~g~~~~~G------------------~~  137 (363)
T 3m6i_A           79 ESAGEVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDF---LSTPPVPG------------------LL  137 (363)
T ss_dssp             EEEEEEEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---TTSTTSCC------------------SC
T ss_pred             ceEEEEEEECCCCCCCCCCCEEEEecccCCCCCHHHHCcCcccCCCccc---cCCCCCCc------------------cc
Confidence            9999999999999999999999999999999999999999999997654   22211233                  99


Q ss_pred             eeeEEEecceeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          150 SQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       150 ~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      +||+++|.+.++++|+ +++++|+.+. ++.|||+++ +..++++|++|||+|+|++|++++|+|+++|+++|+++++++
T Consensus       138 aey~~v~~~~~~~iP~-~s~~~aa~~~-~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~  214 (363)
T 3m6i_A          138 RRYVNHPAVWCHKIGN-MSYENGAMLE-PLSVALAGL-QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDE  214 (363)
T ss_dssp             BSEEEEEGGGEEECTT-CCHHHHHHHH-HHHHHHHHH-HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCH
T ss_pred             eeEEEEehhhEEECCC-CCHHHHHhhh-HHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            9999999999999999 9999999884 788999987 889999999999999999999999999999996699999999


Q ss_pred             hhHhhhhh
Q 026414          230 KKFDREFW  237 (239)
Q Consensus       230 ~~~~~~~~  237 (239)
                      +|++++++
T Consensus       215 ~~~~~a~~  222 (363)
T 3m6i_A          215 GRLKFAKE  222 (363)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998875

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=8.7e-42  Score=301.04  Aligned_cols=211  Identities=22%  Similarity=0.285  Sum_probs=186.1

Q ss_pred             cccceeEEEEecCCCCeEEEe--ecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCC
Q 026414            6 QVITCKAAVAWEPNKPLVIED--VQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT   83 (239)
Q Consensus         6 ~~~~~~a~~~~~~~~~~~~~~--~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~   83 (239)
                      .|.+|||++++++++++++++  +|.|+|++|||||||++++||++|++.+.|.++...+|.++|||++|+|+++|++++
T Consensus         3 ~p~~mka~~~~~~~~~l~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~GhE~~G~V~~vG~~v~   82 (360)
T 1piw_A            3 YPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKSN   82 (360)
T ss_dssp             TTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECTTCC
T ss_pred             CChheEEEEEecCCCCeeEEeccccCCCCCCCeEEEEEEEeccchhhHHHhcCCCCCCCCCcccCcCceEEEEEeCCCCC
Confidence            567899999999886799999  999999999999999999999999999998765556899999999999999999999


Q ss_pred             -CCCCCCEEeecC-ccCCCCCccccCCCCCCCCCc-CCCCC---CceeccCCccccccCCcceeeecCCcceeeeEEEec
Q 026414           84 -EVQPGDHVIPCY-QAECRECKFCKSGKTNLCGKV-RGATG---AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD  157 (239)
Q Consensus        84 -~~~~Gd~V~~~~-~~~~~~c~~c~~~~~~~c~~~-~~~~~---~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  157 (239)
                       +|++||||++.+ ...|+.|.+|++++.+.|.+. .....   .|.. .+                  |+|+||+++|.
T Consensus        83 ~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~-~~------------------G~~aey~~v~~  143 (360)
T 1piw_A           83 SGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYV-SQ------------------GGYANYVRVHE  143 (360)
T ss_dssp             SSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCB-CC------------------CSSBSEEEEEG
T ss_pred             CCCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhccccccCCCcc-CC------------------CcceeEEEEch
Confidence             999999996544 578999999999999999865 11000   0211 22                  49999999999


Q ss_pred             ceeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       158 ~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +.++++|+++++++||.+++++.|||+++.. .++++|++|||+|+|++|++++|+|+++|+ +|++++++++|++++++
T Consensus       144 ~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~  221 (360)
T 1piw_A          144 HFVVPIPENIPSHLAAPLLCGGLTVYSPLVR-NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMK  221 (360)
T ss_dssp             GGEEECCTTSCHHHHGGGGTHHHHHHHHHHH-TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH
T ss_pred             hheEECCCCCCHHHhhhhhhhHHHHHHHHHH-cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH
Confidence            9999999999999999999999999998754 889999999999999999999999999999 89999999999888764

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=3.8e-41  Score=296.02  Aligned_cols=207  Identities=24%  Similarity=0.339  Sum_probs=185.8

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhh-hhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAY-TWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G   88 (239)
                      |||++++++++ ++++|+|.|+|++|||||||++++||++|++ ...|..+. .+|.++|||++|+|+++|+++++|++|
T Consensus         1 MkA~~~~~~~~-~~~~e~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~-~~p~v~G~E~~G~V~~vG~~v~~~~vG   78 (352)
T 3fpc_A            1 MKGFAMLSIGK-VGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGE-RHNMILGHEAVGEVVEVGSEVKDFKPG   78 (352)
T ss_dssp             CEEEEEEETTE-EEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTCC-CSSEECCCEEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEccCCC-ceEEeCCCCCCCCCeEEEEeCEEeEcccchHHHhCCCCCC-CCCcccCCcceEEEEEECCCCCcCCCC
Confidence            89999999998 9999999999999999999999999999999 55776553 679999999999999999999999999


Q ss_pred             CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc--eeEecCCC
Q 026414           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ  166 (239)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~p~~  166 (239)
                      |||++.+..+|+.|.+|..++.+.|.....+...|.. .+                  |+|+||+.+|..  .++++|++
T Consensus        79 drV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~~-~~------------------G~~aey~~v~~~~~~~~~iP~~  139 (352)
T 3fpc_A           79 DRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNV-KD------------------GVFGEFFHVNDADMNLAHLPKE  139 (352)
T ss_dssp             CEEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTTT-BC------------------CSSBSCEEESSHHHHCEECCTT
T ss_pred             CEEEEccccCCCCchhhcCCCcCCccccccccccccC-CC------------------CcccceEEeccccCeEEECCCC
Confidence            9999999999999999999999988765432222221 23                  499999999975  89999999


Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      +++++|+.++.++.|||+++ +..++++|++|||+|+|++|++++|+|+++|+++|++++++++|+++++++
T Consensus       140 ~~~~~aa~~~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l  210 (352)
T 3fpc_A          140 IPLEAAVMIPDMMTTGFHGA-ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY  210 (352)
T ss_dssp             SCHHHHTTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH
T ss_pred             CCHHHHhhccchhHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh
Confidence            99999999988999999977 889999999999999999999999999999998899999999999988653

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=6e-41  Score=293.89  Aligned_cols=209  Identities=27%  Similarity=0.398  Sum_probs=185.0

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC--CCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE--GLFPCILGHEAAGIVESVGEGVTEVQP   87 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~--~~~p~~~G~e~vG~Vv~vG~~v~~~~~   87 (239)
                      |||+++++++++++++|+|.|+|++|||||||++++||++|++.+.|.++.  ..+|.++|||++|+|+++|+++++|++
T Consensus         1 MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~v   80 (345)
T 3jv7_A            1 MKAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGFGV   80 (345)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTTCCSCSSEECCSEEEEEEEEECTTCCSCCT
T ss_pred             CeEEEEcCCCCceEEEEecCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCccCCCCCcccCcccEEEEEEECCCCCCCCC
Confidence            899999999998999999999999999999999999999999999887542  468999999999999999999999999


Q ss_pred             CCEEeecCccCCCCCccccCCCCCCCCCcCCC--CCCceeccCCccccccCCcceeeecCCcceeeeEEEe-cceeEecC
Q 026414           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGA--TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH-DVSVAKID  164 (239)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~--~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~p  164 (239)
                      ||||++.+...|+.|.+|.+++.+.|......  ...|.. .+                  |+|+||+++| ...++++|
T Consensus        81 GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~~-~~------------------G~~aey~~v~~~~~~~~~p  141 (345)
T 3jv7_A           81 GDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLG-SP------------------GSMAEYMIVDSARHLVPIG  141 (345)
T ss_dssp             TCEEEECCSCCCSSSHHHHTTCGGGCSSHHHHTCCCBTTT-BC------------------CSSBSEEEESCGGGEEECT
T ss_pred             CCEEEEecCCCCCCChHHHCcCcCcCccccccccccCCcC-CC------------------ceeeEEEEecchhceEeCC
Confidence            99999999999999999999999999422110  001111 22                  4999999999 99999999


Q ss_pred             CCCCchhhhhcccccchhhhhhhh-hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          165 PQAPLDKVCLLGCGVPTGLGAVWN-TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~-~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      + +++++|+.+++++.|||+++.. ...+++|++|||+|+|++|++++|+++++|..+|++++++++|+++++++
T Consensus       142 ~-~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l  215 (345)
T 3jv7_A          142 D-LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV  215 (345)
T ss_dssp             T-CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT
T ss_pred             C-CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence            9 9999999999999999998866 45899999999999999999999999999555999999999999988753

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=3.3e-41  Score=296.92  Aligned_cols=207  Identities=25%  Similarity=0.364  Sum_probs=183.8

Q ss_pred             ccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCC-CC--CCCCCeeeeeeEEEEEEEeCCCCC
Q 026414            7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DP--EGLFPCILGHEAAGIVESVGEGVT   83 (239)
Q Consensus         7 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~-~~--~~~~p~~~G~e~vG~Vv~vG~~v~   83 (239)
                      +++|||+++++++. ++++|+|.|+|++|||||||++++||++|++.+.+. ..  ...+|.++|||++|+|+++|++++
T Consensus         5 ~~~mka~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~V~   83 (356)
T 1pl8_A            5 KPNNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVK   83 (356)
T ss_dssp             CCCCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCC
T ss_pred             ccCceEEEEecCCc-EEEEEccCCCCCCCeEEEEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEECCCCC
Confidence            46799999999876 999999999999999999999999999999988742 11  125789999999999999999999


Q ss_pred             CCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEec
Q 026414           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (239)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  163 (239)
                      +|++||||++.+..+|++|.+|+.++.+.|.+...   .|....+|                  +|+||+++|.+.++++
T Consensus        84 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~G------------------~~aey~~v~~~~~~~i  142 (356)
T 1pl8_A           84 HLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFF---CATPPDDG------------------NLCRFYKHNAAFCYKL  142 (356)
T ss_dssp             SCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEE---TTBTTBCC------------------SCBSEEEEEGGGEEEC
T ss_pred             CCCCCCEEEEeccCCCCCChHHHCcCcccCCCccc---cCcCCCCC------------------ccccEEEeehHHEEEC
Confidence            99999999999999999999999999999997543   22211233                  9999999999999999


Q ss_pred             CCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      |+++++++|+.+ .++.|||+++ +..++++|++|||+|+|++|++++|+|+++|+.+|++++++++|++++++
T Consensus       143 P~~l~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  214 (356)
T 1pl8_A          143 PDNVTFEEGALI-EPLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE  214 (356)
T ss_dssp             CTTSCHHHHHHH-HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             cCCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            999999999876 4788999977 78899999999999999999999999999998889999999999988865

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=3.6e-41  Score=295.70  Aligned_cols=205  Identities=28%  Similarity=0.376  Sum_probs=172.6

Q ss_pred             cceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcC-CCC--CCCCCeeeeeeEEEEEEEeCCCCCC
Q 026414            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG-KDP--EGLFPCILGHEAAGIVESVGEGVTE   84 (239)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g-~~~--~~~~p~~~G~e~vG~Vv~vG~~v~~   84 (239)
                      ++|||+++++++..++++|+|.|+|++|||||||++++||++|++.+.| .++  ...+|.++|||++|+|+++|+++++
T Consensus         3 ~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~   82 (348)
T 2d8a_A            3 EKMVAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVEG   82 (348)
T ss_dssp             CEEEEEEECSSSSSCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCTTHHHHCCSSEECCCEEEEEEEEECTTCCS
T ss_pred             CcceEEEEECCCCCEEEEECCCCCCCcCEEEEEEeEEEecHHHHHHHcCCCCCcccCCCCCccCccceEEEEEECCCCCc
Confidence            5799999999985599999999999999999999999999999999988 432  2367899999999999999999999


Q ss_pred             CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (239)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p  164 (239)
                      |++||||++.+..+|++|.+|++++.+.|.+...   .|.. .+|                  +|+||+++|.+.++++|
T Consensus        83 ~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~iP  140 (348)
T 2d8a_A           83 IEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKI---FGVD-TDG------------------VFAEYAVVPAQNIWKNP  140 (348)
T ss_dssp             CCTTCEEEECCEECCSCCC------------CEE---TTTS-SCC------------------SSBSEEEEEGGGEEECC
T ss_pred             CCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCe---ecCC-CCC------------------cCcceEEeChHHeEECC
Confidence            9999999999999999999999999999997543   2322 233                  99999999999999999


Q ss_pred             CCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++++++|+.+. ++.|||+++ ...++ +|++|||+|+|++|++++|+++++|+.+|++++++++|++++++
T Consensus       141 ~~~~~~~aa~~~-~~~ta~~~l-~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~  210 (348)
T 2d8a_A          141 KSIPPEYATLQE-PLGNAVDTV-LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK  210 (348)
T ss_dssp             TTSCHHHHTTHH-HHHHHHHHH-TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH
T ss_pred             CCCCHHHHHhhh-HHHHHHHHH-HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            999999999885 788999987 77888 99999999999999999999999998789999999999888764

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=8.4e-41  Score=292.70  Aligned_cols=203  Identities=28%  Similarity=0.432  Sum_probs=182.8

Q ss_pred             eeEEEEecCCCCeEEEeecCCC-CCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAP-PQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~-~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G   88 (239)
                      |||++++++|. ++++|+|.|+ +++|||||||++++||++|++.+.+..+. .+|.++|||++|+|+++|++++++++|
T Consensus         1 MkAvv~~~~g~-l~v~e~p~P~~~~~~eVlVkv~a~gi~~sD~~~~~g~~~~-~~P~i~G~E~~G~V~~vG~~V~~~~~G   78 (346)
T 4a2c_A            1 MKSVVNDTDGI-VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGAH-YYPITLGHEFSGYIDAVGSGVDDLHPG   78 (346)
T ss_dssp             CEEEEECSSSC-EEEEECCCCCCCSTTEEEEEEEEEECCTTHHHHHHSSCSS-SSSBCCCCEEEEEEEEECTTCCSCCTT
T ss_pred             CCEEEEecCCC-EEEEEEeCCCCCCcCEEEEEEEEEEECHHHHHHHcCCCCC-CCCccccEEEEEEEEEECCCcccccCC
Confidence            89999999997 9999999998 57999999999999999999999887554 689999999999999999999999999


Q ss_pred             CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCC
Q 026414           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (239)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~  168 (239)
                      |+|.+.+...|+.|.+|..++.+.|.+...   .|.. .+|                  +|+||+++|.+.++++|++++
T Consensus        79 drV~~~~~~~~g~c~~c~~g~~~~c~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~iP~~l~  136 (346)
T 4a2c_A           79 DAVACVPLLPCFTCPECLKGFYSQCAKYDF---IGSR-RDG------------------GFAEYIVVKRKNVFALPTDMP  136 (346)
T ss_dssp             CEEEECCEECCSCSHHHHTTCGGGCSSCEE---BTTT-BCC------------------SSBSEEEEEGGGEEECCTTSC
T ss_pred             CeEEeeeccCCCCcccccCCccccCCCccc---ccCC-CCc------------------ccccccccchheEEECCCCCC
Confidence            999999999999999999999999997654   3333 344                  999999999999999999999


Q ss_pred             chhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      +++||.+. .+.++++ +....+.++|++|||+|+|++|++++|+++++|+..+++++++++|+++++++
T Consensus       137 ~~~aa~l~-~~~~~~~-~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~l  204 (346)
T 4a2c_A          137 IEDGAFIE-PITVGLH-AFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSF  204 (346)
T ss_dssp             GGGGGGHH-HHHHHHH-HHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             HHHHHhch-HHHHHHH-HHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHc
Confidence            99999875 3444454 66889999999999999999999999999999998889999999999988753

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-40  Score=292.17  Aligned_cols=208  Identities=31%  Similarity=0.467  Sum_probs=185.6

Q ss_pred             cccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCC
Q 026414            6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTE   84 (239)
Q Consensus         6 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~   84 (239)
                      .|.+|||+++++++.+++++++|.|+|++|||||||++++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++
T Consensus         2 ~p~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~   81 (347)
T 2hcy_A            2 IPETQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENVKG   81 (347)
T ss_dssp             CCSEEEEEEESSTTCCCEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSEECCCEEEEEEEEECTTCCS
T ss_pred             CCcccEEEEEeCCCCCCEEEEeeCCCCCCCEEEEEEEEEEechhHHHHhcCCCCCCCCCCcccCccceEEEEEECCCCCC
Confidence            5678999999999866999999999999999999999999999999999886542 367999999999999999999999


Q ss_pred             CCCCCEEeecCcc-CCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEec
Q 026414           85 VQPGDHVIPCYQA-ECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (239)
Q Consensus        85 ~~~Gd~V~~~~~~-~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  163 (239)
                      |++||||++.+.. .|+.|.+|+.++.+.|.+...   .|.. .+|                  +|+||+++|.+.++++
T Consensus        82 ~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~i  139 (347)
T 2hcy_A           82 WKIGDYAGIKWLNGSCMACEYCELGNESNCPHADL---SGYT-HDG------------------SFQQYATADAVQAAHI  139 (347)
T ss_dssp             CCTTCEEEECSEEECCSSSTTTTTTCGGGCTTCEE---BTTT-BCC------------------SSBSEEEEETTTSEEE
T ss_pred             CcCCCEEEEecCCCCCCCChhhhCCCcccCccccc---cccC-CCC------------------cceeEEEeccccEEEC
Confidence            9999999987644 599999999999999987543   2221 234                  9999999999999999


Q ss_pred             CCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      |+++++++|+.+++++.|||+++ ...++++|++|||+|+ |++|++++++++..|+ +|+++++++++++.+++
T Consensus       140 P~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~  212 (347)
T 2hcy_A          140 PQGTDLAQVAPILCAGITVYKAL-KSANLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRS  212 (347)
T ss_dssp             CTTCCHHHHGGGGTHHHHHHHHH-HTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHH
T ss_pred             CCCCCHHHHHHHhhhHHHHHHHH-HhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHH
Confidence            99999999999999999999977 4558999999999998 9999999999999999 99999999988887754

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=7.2e-41  Score=294.25  Aligned_cols=205  Identities=29%  Similarity=0.475  Sum_probs=181.7

Q ss_pred             cceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhc-CCCC--CCCCCeeeeeeEEEEEEEeCCCCCC
Q 026414            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDP--EGLFPCILGHEAAGIVESVGEGVTE   84 (239)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~-g~~~--~~~~p~~~G~e~vG~Vv~vG~~v~~   84 (239)
                      ++|||+++++++. ++++++|.|+|++|||||||++++||++|++.+. +...  ...+|.++|||++|+|+++|+++++
T Consensus         3 ~~mka~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~   81 (352)
T 1e3j_A            3 SDNLSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKH   81 (352)
T ss_dssp             -CCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCS
T ss_pred             ccCEEEEEEcCCc-EEEEEecCCCCCCCeEEEEEEEEEEChhhHHHHcCCCCccccCCCCccccccceEEEEEeCCCCCC
Confidence            4699999999876 9999999999999999999999999999999887 3322  1257899999999999999999999


Q ss_pred             CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (239)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p  164 (239)
                      |++||||++.+..+|+.|.+|+.++.+.|.+...   .|....+                  |+|+||+++|.+.++++|
T Consensus        82 ~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~------------------G~~aey~~v~~~~~~~iP  140 (352)
T 1e3j_A           82 LKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTF---CATPPDD------------------GNLARYYVHAADFCHKLP  140 (352)
T ss_dssp             CCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEE---TTBTTBC------------------CSCBSEEEEEGGGEEECC
T ss_pred             CCCCCEEEEcCcCCCCCChhhhCcCcccCCCCcc---cCcCCCC------------------ccceeEEEeChHHeEECc
Confidence            9999999999999999999999999999997643   2221123                  399999999999999999


Q ss_pred             CCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++++++|+.+ .++.|||+++ +..++++|++|||+|+|++|++++|+++++|+ +|++++++++|++++++
T Consensus       141 ~~~~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~  210 (352)
T 1e3j_A          141 DNVSLEEGALL-EPLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKN  210 (352)
T ss_dssp             TTSCHHHHHTH-HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             CCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH
Confidence            99999999876 4788999977 78899999999999999999999999999999 69999999999988865

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=3.1e-41  Score=295.58  Aligned_cols=204  Identities=27%  Similarity=0.446  Sum_probs=183.7

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC---CCCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTEVQ   86 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~vG~Vv~vG~~v~~~~   86 (239)
                      |||+++++++++++++|+|.|+|++|||||||++++||++|++.+.|.++   ...+|.++|||++|+|+++|+++++|+
T Consensus         1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   80 (343)
T 2dq4_A            1 MRALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQ   80 (343)
T ss_dssp             CEEEEECSSSSSCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTCHHHHHHCCSSEECCCEEEEEEEEECTTCCSSC
T ss_pred             CeEEEEeCCCCcEEEEeccCCCCCCCEEEEEEEEEeechhhHHHHcCCCCccccCCCCCcCCccceEEEEEECCCCCcCC
Confidence            79999999987799999999999999999999999999999999988654   246799999999999999999999999


Q ss_pred             CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (239)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~  166 (239)
                      +||||++.+..+|++|.+|++++.+.|.+...   .|.. .+                  |+|+||+++|.+.++++|++
T Consensus        81 vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~-~~------------------G~~aey~~v~~~~~~~iP~~  138 (343)
T 2dq4_A           81 VGDHVSLESHIVCHACPACRTGNYHVCLNTQI---LGVD-RD------------------GGFAEYVVVPAENAWVNPKD  138 (343)
T ss_dssp             TTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---BTTT-BC------------------CSSBSEEEEEGGGEEEECTT
T ss_pred             CCCEEEECCCCCCCCChhhhCcCcccCCCcce---ecCC-CC------------------CcceeEEEEchHHeEECCCC
Confidence            99999999999999999999999999997643   2221 23                  39999999999999999999


Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++++|+.+. ++.|||+++....++ +|++|||+|+|++|++++|+|+++|+.+|++++++++|++++++
T Consensus       139 ~~~~~aa~~~-~~~ta~~~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~  207 (343)
T 2dq4_A          139 LPFEVAAILE-PFGNAVHTVYAGSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARP  207 (343)
T ss_dssp             SCHHHHTTHH-HHHHHHHHHHSTTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTT
T ss_pred             CCHHHHHhhh-HHHHHHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            9999998874 677999988547888 99999999999999999999999998789999999999888764

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=9.6e-41  Score=292.60  Aligned_cols=204  Identities=30%  Similarity=0.461  Sum_probs=179.5

Q ss_pred             cceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC--CCCCCeeeeeeEEEEEEEeCCCCCCC
Q 026414            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP--EGLFPCILGHEAAGIVESVGEGVTEV   85 (239)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~--~~~~p~~~G~e~vG~Vv~vG~~v~~~   85 (239)
                      .+|||+++++++++++++|+|.|+|++|||||||++++||++|++.+.|.++  ...+|.++|||++|+|+++|++ ++|
T Consensus         2 ~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~E~~G~V~~vG~~-~~~   80 (344)
T 2h6e_A            2 VKSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGEL-AKV   80 (344)
T ss_dssp             EEEEBCEECSCCC-----EEEECCCCTTCEEEEEEEEECCHHHHHHHTTSCCCTTCCSSEECCCCEEEEEEEECTT-CCC
T ss_pred             ceeEEEEEecCCCCCeEEEeeCCCCCCCEEEEEEEEEEechhhHHHHcCCCcccCCCCCccccccceEEEEEECCC-CCC
Confidence            4799999999986799999999999999999999999999999999998765  3468999999999999999999 999


Q ss_pred             CCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEe-cceeEecC
Q 026414           86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH-DVSVAKID  164 (239)
Q Consensus        86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~p  164 (239)
                      ++||||+..+..+|++|.+|++++++.|.+...   .|.. .+|                  +|+||+++| .+.++++ 
T Consensus        81 ~~GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~-~~G------------------~~aey~~v~~~~~~~~i-  137 (344)
T 2h6e_A           81 KKGDNVVVYATWGDLTCRYCREGKFNICKNQII---PGQT-TNG------------------GFSEYMLVKSSRWLVKL-  137 (344)
T ss_dssp             CTTCEEEECSCBCCSCSTTGGGTCGGGCTTCBC---BTTT-BCC------------------SSBSEEEESCGGGEEEE-
T ss_pred             CCCCEEEECCCCCCCCChhhhCCCcccCCCccc---cccc-cCC------------------cceeeEEecCcccEEEe-
Confidence            999999988889999999999999999997643   2322 334                  999999999 9999999 


Q ss_pred             CCCCchhhhhcccccchhhhhhhhh----cCCCCCCEEEEEcCCHHHHHHHHHHHHc--CCCeEEEEcCChhhHhhhhh
Q 026414          165 PQAPLDKVCLLGCGVPTGLGAVWNT----AKVEPGSIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~----~~~~~g~~vlI~G~g~~g~~ai~~~~~~--G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++++++|+.+++++.|||+++...    .++ +|++|||+|+|++|++++|+|+++  |+ +|++++++++|++++++
T Consensus       138 ~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~  214 (344)
T 2h6e_A          138 NSLSPVEAAPLADAGTTSMGAIRQALPFISKF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALE  214 (344)
T ss_dssp             SSSCHHHHGGGGTHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHH
T ss_pred             CCCCHHHhhhhhhhhHHHHHHHHhhhhcccCC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHH
Confidence            9999999999999999999987554    278 999999999999999999999999  99 89999999999988864

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=2.3e-40  Score=291.68  Aligned_cols=216  Identities=25%  Similarity=0.300  Sum_probs=185.4

Q ss_pred             CCcccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCC
Q 026414            4 EGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT   83 (239)
Q Consensus         4 ~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~   83 (239)
                      +.++++|+++++.++.+.++++++|.|+|++|||||||++++||++|++.+.|.++...+|.++|||++|+|+++|++++
T Consensus         4 m~~~m~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~v~   83 (357)
T 2cf5_A            4 MEAERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYPMVPGHEVVGEVVEVGSDVS   83 (357)
T ss_dssp             --CCCEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHTCTTTCCCSSBCCCCEEEEEEEEECSSCC
T ss_pred             ccCcceeEEEEEccCCCCcEEEEecCCCCCCCEEEEEEEEEeecchhhhhhcCCCCCCCCCeecCcceeEEEEEECCCCC
Confidence            35678899999988877799999999999999999999999999999999988765456899999999999999999999


Q ss_pred             CCCCCCEEeecCc-cCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEe
Q 026414           84 EVQPGDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK  162 (239)
Q Consensus        84 ~~~~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  162 (239)
                      +|++||||++.+. .+|++|.+|+.++.+.|.+..... .+.. ..|             ....|+|+||+++|.+.+++
T Consensus        84 ~~~vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~-~~~~-~~g-------------~~~~G~~aey~~v~~~~~~~  148 (357)
T 2cf5_A           84 KFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSY-NDVY-ING-------------QPTQGGFAKATVVHQKFVVK  148 (357)
T ss_dssp             SCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETT-TSBC-TTS-------------CBCCCSSBSCEEEEGGGEEE
T ss_pred             CCCCCCEEEEcCCCCCCCCChHHhCcCcccCCCccccc-cccc-cCC-------------CCCCCccccEEEechhhEEE
Confidence            9999999987553 589999999999999997543211 0000 011             11235999999999999999


Q ss_pred             cCCCCCchhhhhcccccchhhhhhhhhcCCC-CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVE-PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       163 ~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~-~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      +|+++++++|+.+++++.|||+++ ...+++ +|++|||+|+|++|++++|+++++|+ +|++++++++|+++++
T Consensus       149 ~P~~ls~~~aa~l~~~~~ta~~~l-~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~  221 (357)
T 2cf5_A          149 IPEGMAVEQAAPLLCAGVTVYSPL-SHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEAL  221 (357)
T ss_dssp             CCSSCCHHHHTGGGTHHHHHHHHH-HHTSTTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHH
T ss_pred             CcCCCCHHHhhhhhhhHHHHHHHH-HhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHH
Confidence            999999999999999999999976 456788 99999999999999999999999999 8999999999988776

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=1.3e-40  Score=291.21  Aligned_cols=204  Identities=33%  Similarity=0.509  Sum_probs=183.1

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQPG   88 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~~G   88 (239)
                      |||+++++++++++++|+|.|+|++|||||||++++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|++|
T Consensus         1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~GhE~~G~V~~vG~~v~~~~vG   80 (339)
T 1rjw_A            1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVG   80 (339)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEeEchhhHHHhcCCCCcCCCCCeeccccceEEEEEECCCCCcCCCC
Confidence            799999999866999999999999999999999999999999999886542 3679999999999999999999999999


Q ss_pred             CEEeecCcc-CCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCC
Q 026414           89 DHVIPCYQA-ECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (239)
Q Consensus        89 d~V~~~~~~-~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~  167 (239)
                      |||++.+.. .|++|.+|+.++.+.|.+...   .|.. .+|                  +|+||+++|.+.++++|+++
T Consensus        81 drV~~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~~P~~~  138 (339)
T 1rjw_A           81 DRVGIPWLYSACGHCDYCLSGQETLCEHQKN---AGYS-VDG------------------GYAEYCRAAADYVVKIPDNL  138 (339)
T ss_dssp             CEEEECSEEECCSCSHHHHTTCGGGCTTCEE---BTTT-BCC------------------SSBSEEEEEGGGCEECCTTS
T ss_pred             CEEEEecCCCCCCCCchhhCcCcccCCCcce---eecC-CCC------------------cceeeEEechHHEEECCCCC
Confidence            999987643 599999999999999987543   2322 334                  99999999999999999999


Q ss_pred             CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++++||.+++++.|||+++.. .++++|++|||+|+|++|++++|+++.+|+ +|++++++++|++++++
T Consensus       139 ~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~  206 (339)
T 1rjw_A          139 SFEEAAPIFCAGVTTYKALKV-TGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE  206 (339)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHH-HTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH
T ss_pred             CHHHhhhhhhhHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence            999999999999999998744 489999999999998899999999999999 99999999999988764

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=1.5e-40  Score=291.31  Aligned_cols=205  Identities=28%  Similarity=0.444  Sum_probs=186.6

Q ss_pred             eeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (239)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~   86 (239)
                      |||+++++++++  ++++++|.|+|++|||||||++++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|+
T Consensus         1 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   80 (343)
T 2eih_A            1 MRAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVGPGVEGFA   80 (343)
T ss_dssp             CEEEEECSSSSGGGEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSSTTCCSSEECCSEEEEEEEEECSSCCSCC
T ss_pred             CeEEEEecCCCCceEEEEecCCCCCCCCEEEEEEEEEEeCHHHHHHhcCCCCCCCCCCcccccceEEEEEEECCCCCCCC
Confidence            799999998875  899999999999999999999999999999999887643 36799999999999999999999999


Q ss_pred             CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (239)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~  166 (239)
                      +||||++.+..+|+.|.+|+.++++.|.+...   .|.. .+|                  +|+||+++|.+.++++|++
T Consensus        81 vGdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~---~G~~-~~G------------------~~aey~~v~~~~~~~~P~~  138 (343)
T 2eih_A           81 PGDEVVINPGLSCGRCERCLAGEDNLCPRYQI---LGEH-RHG------------------TYAEYVVLPEANLAPKPKN  138 (343)
T ss_dssp             TTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---TTTS-SCC------------------SSBSEEEEEGGGEEECCTT
T ss_pred             CCCEEEECCCCCcccchhhccCcccccccccc---cCcC-CCc------------------cceeEEEeChHHeEECCCC
Confidence            99999999999999999999999999997653   2322 234                  9999999999999999999


Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++++|+.++.++.|||+++....++++|++|||+|+ |++|++++++++.+|+ +|+++++++++++++++
T Consensus       139 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~  209 (343)
T 2eih_A          139 LSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKA  209 (343)
T ss_dssp             SCHHHHHHSHHHHHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             CCHHHHhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh
Confidence            9999999999999999998866678999999999998 9999999999999999 99999999999888754

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.3e-40  Score=292.08  Aligned_cols=211  Identities=28%  Similarity=0.438  Sum_probs=183.7

Q ss_pred             cccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCC
Q 026414            6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV   85 (239)
Q Consensus         6 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~   85 (239)
                      ..++||++++.++++.++++++|.|+|++|||||||++++||++|++.+.|..+...+|.++|||++|+|+++|+++++|
T Consensus        19 ~~~~~~a~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~~   98 (369)
T 1uuf_A           19 AGLKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKY   98 (369)
T ss_dssp             ----CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEECTTCCSC
T ss_pred             cCceEEEEEEcCCCCCcEEEEecCCCCCCCeEEEEEEEEeecHHHHHHhcCCCCCCCCCeecccCceEEEEEECCCCCCC
Confidence            34789999998887789999999999999999999999999999999998876545689999999999999999999999


Q ss_pred             CCCCEEeecCc-cCCCCCccccCCCCCCCCCcCCCC--C---CceeccCCccccccCCcceeeecCCcceeeeEEEecce
Q 026414           86 QPGDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGAT--G---AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS  159 (239)
Q Consensus        86 ~~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~--~---~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  159 (239)
                      ++||||++.+. ..|+.|.+|++++.+.|.+.....  .   .|.. .                  .|+|+||+++|.+.
T Consensus        99 ~vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~g~~-~------------------~G~~aeyv~v~~~~  159 (369)
T 1uuf_A           99 APGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGH-T------------------LGGYSQQIVVHERY  159 (369)
T ss_dssp             CTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSB-C------------------CCSSBSEEEEEGGG
T ss_pred             CCCCEEEEccCCCCCCCCcccCCCCcccCcchhcccccccccCCCC-C------------------CCcccceEEEcchh
Confidence            99999998775 469999999999999999752110  0   0111 2                  24999999999999


Q ss_pred             eEecCCC-CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          160 VAKIDPQ-APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       160 ~~~~p~~-~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++++|++ +++++||.+++++.|||+++. ..++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|++++++
T Consensus       160 ~~~~P~~~ls~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~  236 (369)
T 1uuf_A          160 VLRIRHPQEQLAAVAPLLCAGITTYSPLR-HWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA  236 (369)
T ss_dssp             CEECCSCGGGHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH
T ss_pred             EEECCCCCCCHHHhhhhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            9999999 999999999999999999875 4689999999999999999999999999999 79999999999988764

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.8e-40  Score=291.96  Aligned_cols=213  Identities=27%  Similarity=0.397  Sum_probs=184.5

Q ss_pred             cceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCC----
Q 026414            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT----   83 (239)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~----   83 (239)
                      .+||+++++++++.++++|+|.|+|++|||||||++++||++|++.+.|.++...+|.++|||++|+|+++| +++    
T Consensus        16 ~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~P~v~GhE~~G~V~~vG-~V~~~~~   94 (380)
T 1vj0_A           16 LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVN-GEKRDLN   94 (380)
T ss_dssp             EEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEES-SCCBCTT
T ss_pred             hheEEEEEecCCCCeEEEEccCCCCCCCEEEEEEeEEeecccchHHhcCCCCCCCCCcccCcCcEEEEEEeC-Ccccccc
Confidence            689999999998559999999999999999999999999999999999876544689999999999999999 999    


Q ss_pred             --CCCCCCEEeecCccCCCCCcccc-CCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEE-ecce
Q 026414           84 --EVQPGDHVIPCYQAECRECKFCK-SGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVV-HDVS  159 (239)
Q Consensus        84 --~~~~Gd~V~~~~~~~~~~c~~c~-~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~  159 (239)
                        +|++||||++.+..+|+.|.+|+ .++.+.|.+...   .|....++        .   .....|+|+||+++ |.+.
T Consensus        95 ~~~~~vGdrV~~~~~~~cg~C~~C~~~g~~~~C~~~~~---~g~~~~~~--------~---~~~~~G~~aey~~v~~~~~  160 (380)
T 1vj0_A           95 GELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV---YGINRGCS--------E---YPHLRGCYSSHIVLDPETD  160 (380)
T ss_dssp             SCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEE---TTTTCCSS--------S---TTCCCSSSBSEEEECTTCC
T ss_pred             CCCCCCCCEEEEcccCCCCCCHHHhcCCCcccCCCcce---eccccccC--------C---CCCCCccccceEEEcccce
Confidence              99999999999999999999999 999999987543   12100000        0   00112499999999 9999


Q ss_pred             eEecCCCCCch-hhhhcccccchhhhhhhhhcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          160 VAKIDPQAPLD-KVCLLGCGVPTGLGAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       160 ~~~~p~~~~~~-~aa~l~~~~~ta~~~~~~~~~-~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++++|++++++ +|+.+. +++|||+++ ...+ +++|++|||+|+|++|++++|+|+++|+.+|++++++++|++++++
T Consensus       161 ~~~iP~~l~~~~~Aa~~~-~~~ta~~al-~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~  238 (380)
T 1vj0_A          161 VLKVSEKDDLDVLAMAMC-SGATAYHAF-DEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE  238 (380)
T ss_dssp             EEEECTTSCHHHHHHHTT-HHHHHHHHH-HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH
T ss_pred             EEECCCCCChHHhHhhhc-HHHHHHHHH-HhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH
Confidence            99999999999 666666 999999988 6778 9999999999999999999999999995499999999999998864

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=1.3e-39  Score=285.71  Aligned_cols=203  Identities=29%  Similarity=0.455  Sum_probs=183.3

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC--------CCCCCeeeeeeEEEEEEEeCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP--------EGLFPCILGHEAAGIVESVGEG   81 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~--------~~~~p~~~G~e~vG~Vv~vG~~   81 (239)
                      |||+++++++++++++|+|.|+|++|||||||++++||++|++.+.|.++        ...+|.++|||++|+|+++|++
T Consensus         1 Mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~   80 (347)
T 1jvb_A            1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE   80 (347)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred             CeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEEEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEEEECCC
Confidence            79999999987799999999999999999999999999999999887644        2367999999999999999999


Q ss_pred             CCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEec-cee
Q 026414           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD-VSV  160 (239)
Q Consensus        82 v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~  160 (239)
                      +++|++||||+..+..+|+.|.+|+.++.+.|.+...   .|.. .+|                  +|+||+++|. +.+
T Consensus        81 v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~-~~G------------------~~aey~~v~~~~~~  138 (347)
T 1jvb_A           81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRW---LGIN-FDG------------------AYAEYVIVPHYKYM  138 (347)
T ss_dssp             CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEE---BTTT-BCC------------------SSBSEEEESCGGGE
T ss_pred             CCCCCCCCEEEeCCCCCCCCChhhhCcCcccCccccc---cccc-CCC------------------cceeEEEecCccce
Confidence            9999999999988989999999999999999997643   2322 233                  9999999999 999


Q ss_pred             EecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHc-CCCeEEEEcCChhhHhhhhh
Q 026414          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       161 ~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~-G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++ +++++++|+.+++++.|||+++ .+.++++|++|||+|+ |++|++++|+++.. |+ +|+++++++++++++++
T Consensus       139 ~~i-~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~  214 (347)
T 1jvb_A          139 YKL-RRLNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKR  214 (347)
T ss_dssp             EEC-SSSCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHH
T ss_pred             EEe-CCCCHHHcccchhhHHHHHHHH-HhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHH
Confidence            999 9999999999999999999977 5688999999999998 59999999999999 99 89999999999888754

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=8.2e-40  Score=292.07  Aligned_cols=210  Identities=26%  Similarity=0.354  Sum_probs=184.0

Q ss_pred             ceeEEEEecCCCCeEEEeecCCCC-CC-----CeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCC
Q 026414            9 TCKAAVAWEPNKPLVIEDVQVAPP-QA-----GEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV   82 (239)
Q Consensus         9 ~~~a~~~~~~~~~~~~~~~~~p~~-~~-----~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v   82 (239)
                      +|||+++++++. ++++|+|.|+| ++     |||||||++++||++|++++.|.++ ..+|.++|||++|+|+++|+++
T Consensus         2 ~MkA~~~~~~~~-l~~~~~p~P~~~~~~~~~~~eVlVkv~a~gic~~D~~~~~G~~~-~~~p~v~GhE~~G~V~~vG~~v   79 (398)
T 2dph_A            2 GNKSVVYHGTRD-LRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFI-VPKGHVLGHEITGEVVEKGSDV   79 (398)
T ss_dssp             CEEEEEEEETTE-EEEEEECCCCSEETTEECTTCEEEEEEEEECCHHHHHHHTTSSC-CCTTCBCCCCEEEEEEEECTTC
T ss_pred             ccEEEEEEcCCC-EEEEEccCCCCCCCcCCCCCeEEEEEEEEeecHHHHHHhcCCCC-CCCCcccCCceEEEEEEECCCC
Confidence            699999999876 99999999998 68     9999999999999999999998643 3678999999999999999999


Q ss_pred             CCCCCCCEEeecCccCCCCCccccCCCCCCCCC--cCCC---CCCceeccCCccccccCCcceeeecCCcceeeeEEEec
Q 026414           83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGK--VRGA---TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD  157 (239)
Q Consensus        83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~--~~~~---~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  157 (239)
                      ++|++||||++.+...|+.|.+|++++.+.|.+  ....   ...|.. .               ....|+|+||+++|.
T Consensus        80 ~~~~vGDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~-~---------------~~~~G~~aey~~v~~  143 (398)
T 2dph_A           80 ELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFD-L---------------KGWSGGQAEYVLVPY  143 (398)
T ss_dssp             CSCCTTCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTT-B---------------SSCCCSSBSEEEESS
T ss_pred             CCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCccccccccccccccc-c---------------CCCCceeeeeEEecc
Confidence            999999999999999999999999999999987  2100   011210 0               011249999999998


Q ss_pred             c--eeEecCCCCCchh----hhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          158 V--SVAKIDPQAPLDK----VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       158 ~--~~~~~p~~~~~~~----aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      .  .++++|+++++++    |+.+++++.|||+++ +..++++|++|||+|+|++|++++|+|+++|+.+|++++++++|
T Consensus       144 ~~~~~~~iP~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~  222 (398)
T 2dph_A          144 ADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGC-VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPER  222 (398)
T ss_dssp             HHHHCEECSSHHHHHHTHHHHTTTTTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHH
T ss_pred             ccCeEEECCCCCChhhhcchhhhhcCHHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHH
Confidence            6  8999999999988    888888999999988 78899999999999999999999999999998899999999999


Q ss_pred             Hhhhhh
Q 026414          232 FDREFW  237 (239)
Q Consensus       232 ~~~~~~  237 (239)
                      ++++++
T Consensus       223 ~~~a~~  228 (398)
T 2dph_A          223 LKLLSD  228 (398)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            998865

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=2.9e-39  Score=285.63  Aligned_cols=213  Identities=24%  Similarity=0.381  Sum_probs=180.3

Q ss_pred             ccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414            7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (239)
Q Consensus         7 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~   86 (239)
                      +++|+++...+..+.++++++|.|+|++|||||||++++||++|++.+.|.++...+|.++|||++|+|+++|+++++|+
T Consensus        14 ~mk~~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~~~   93 (366)
T 1yqd_A           14 PVKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPLVPGHEIVGEVTEVGSKVKKVN   93 (366)
T ss_dssp             SEEEEEEEECSTTCCEEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHHTSSSCCCSSBCCCCCEEEEEEEECTTCCSCC
T ss_pred             CeeEEEEEEcCCCCCcEEEEccCCCCCCCeEEEEEEEEeechhhHHHHcCCCCCCCCCEecccceEEEEEEECCCCCcCC
Confidence            45556666666656699999999999999999999999999999999988765456899999999999999999999999


Q ss_pred             CCCEEeecCc-cCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCC
Q 026414           87 PGDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (239)
Q Consensus        87 ~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~  165 (239)
                      +||||++.+. ..|+.|.+|+.++.+.|....... .|.. ..|             ....|+|+||+++|...++++|+
T Consensus        94 vGDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~-~~~~-~~g-------------~~~~G~~aey~~v~~~~~~~~P~  158 (366)
T 1yqd_A           94 VGDKVGVGCLVGACHSCESCANDLENYCPKMILTY-ASIY-HDG-------------TITYGGYSNHMVANERYIIRFPD  158 (366)
T ss_dssp             TTCEEEECSEEECCSSSHHHHTTCGGGCTTCEESS-SSBC-TTS-------------CBCCCSSBSEEEEEGGGCEECCT
T ss_pred             CCCEEEEcCCcCCCCCChhhhCcCcccCCcccccc-cccc-cCC-------------CcCCCccccEEEEchhhEEECCC
Confidence            9999987654 589999999999999996543210 0100 001             11235999999999999999999


Q ss_pred             CCCchhhhhcccccchhhhhhhhhcCCC-CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVE-PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~-~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ++++++|+.+++++.|||+++ ...+++ +|++|||+|+|++|++++|+++.+|+ +|++++++++|++.+.
T Consensus       159 ~ls~~~aa~l~~~~~ta~~al-~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~  228 (366)
T 1yqd_A          159 NMPLDGGAPLLCAGITVYSPL-KYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEAL  228 (366)
T ss_dssp             TSCTTTTGGGGTHHHHHHHHH-HHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHH
T ss_pred             CCCHHHhhhhhhhHHHHHHHH-HhcCcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            999999999999999999977 456777 99999999999999999999999999 8999999999988765

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=8.8e-40  Score=291.71  Aligned_cols=211  Identities=28%  Similarity=0.378  Sum_probs=183.6

Q ss_pred             ceeEEEEecCCCCeEEEeecCCCCC-CCe------EEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCC
Q 026414            9 TCKAAVAWEPNKPLVIEDVQVAPPQ-AGE------VRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG   81 (239)
Q Consensus         9 ~~~a~~~~~~~~~~~~~~~~~p~~~-~~e------VlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~   81 (239)
                      +|||+++.+++. ++++++|.|+|+ ++|      |||||++++||++|++++.|.++ ..+|.++|||++|+|+++|++
T Consensus         2 ~Mka~~~~~~~~-l~~~~~p~P~~~~~~e~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~p~v~GhE~~G~V~~vG~~   79 (398)
T 1kol_A            2 GNRGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT-AQVGLVLGHEITGEVIEKGRD   79 (398)
T ss_dssp             CEEEEEEEETTE-EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC-CCTTCBCCCCEEEEEEEECTT
T ss_pred             ccEEEEEecCCc-eEEEEecCCCCCCCCcccccceEEEEEEEEeechhhHHHHcCCCC-CCCCcccCcccEEEEEEECCC
Confidence            699999998876 999999999997 898      99999999999999999988653 357899999999999999999


Q ss_pred             CCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCC---CCceeccCCccccccCCcceeeecCCcceeeeEEEecc
Q 026414           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT---GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV  158 (239)
Q Consensus        82 v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~---~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  158 (239)
                      +++|++||||++.+...|+.|.+|++++.+.|.+.....   ..|+...               ....|+|+||+++|..
T Consensus        80 v~~~~vGDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~---------------~~~~G~~aey~~v~~~  144 (398)
T 1kol_A           80 VENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDM---------------GDWTGGQAEYVLVPYA  144 (398)
T ss_dssp             CCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTS---------------CCBCCCSBSEEEESSH
T ss_pred             CCcCCCCCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeeccC---------------CCCCceeeeEEEecch
Confidence            999999999999998999999999999999999764210   0111000               0113599999999986


Q ss_pred             --eeEecCCCCCchh----hhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 026414          159 --SVAKIDPQAPLDK----VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (239)
Q Consensus       159 --~~~~~p~~~~~~~----aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~  232 (239)
                        .++++|+++++++    ++.+++++.|||+++ ...++++|++|||+|+|++|++++|+|+++|+++|++++++++|+
T Consensus       145 ~~~~~~~P~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~  223 (398)
T 1kol_A          145 DFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARL  223 (398)
T ss_dssp             HHHCEECSCHHHHHHTHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH
T ss_pred             hCeEEECCCCcchhhhcccccccccHHHHHHHHH-HHcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHH
Confidence              8999999999887    788888999999988 478999999999999999999999999999997899999999999


Q ss_pred             hhhhh
Q 026414          233 DREFW  237 (239)
Q Consensus       233 ~~~~~  237 (239)
                      +++++
T Consensus       224 ~~a~~  228 (398)
T 1kol_A          224 AHAKA  228 (398)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98865

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=8.8e-40  Score=287.92  Aligned_cols=204  Identities=19%  Similarity=0.203  Sum_probs=179.9

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCC---CeeeeeeEEEEEEEeCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF---PCILGHEAAGIVESVGEGVTEVQ   86 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~---p~~~G~e~vG~Vv~vG~~v~~~~   86 (239)
                      |||+++++++++++++++|.|+|++|||||||++++||++|++++.|.++...+   |.++|||++| |+++|++ ++|+
T Consensus         1 MkA~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G-V~~vG~~-~~~~   78 (357)
T 2b5w_A            1 MKAIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVLGHEAVG-VVVDPND-TELE   78 (357)
T ss_dssp             CEEEEEETTCSSCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHSCSTTSCTTCSEEECCSEEEE-EEEECTT-SSCC
T ss_pred             CeEEEEeCCCCceEEEECCCCCCCcCEEEEEEeEEeechhcHHHHcCCCCCCCCCCCCcccCceeEE-EEEECCC-CCCC
Confidence            799999999888999999999999999999999999999999999987654456   8999999999 9999999 9999


Q ss_pred             CCCEEeecCccC--CCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414           87 PGDHVIPCYQAE--CRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (239)
Q Consensus        87 ~Gd~V~~~~~~~--~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p  164 (239)
                      +||||++.+...  |++|.+|++++.+.|.+..... .|....+|                  +|+||+++|.+.++++|
T Consensus        79 vGdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~-~g~~~~~G------------------~~aey~~v~~~~~~~iP  139 (357)
T 2b5w_A           79 EGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFE-RGIVGAHG------------------YMSEFFTSPEKYLVRIP  139 (357)
T ss_dssp             TTCEEEECSEECCTTCCCHHHHTTCGGGCCTTSCEE-ETTBEECC------------------SCBSEEEEEGGGEEECC
T ss_pred             CCCEEEECCcCCCCCCCChHHhCcCcccCCCCcccc-cCccCCCc------------------ceeeEEEEchHHeEECC
Confidence            999999998878  9999999999999999764310 02201234                  99999999999999999


Q ss_pred             CCCCchhhhhcccccchhhhhhhhhcCCCCC------CEEEEEcCCHHHHHH-HHHH-HHcCCCeEEEEcCChh---hHh
Q 026414          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPG------SIVAVFGLGTVGLAV-AEGA-KAAGASRVIGIDIDPK---KFD  233 (239)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g------~~vlI~G~g~~g~~a-i~~~-~~~G~~~vv~~~~~~~---~~~  233 (239)
                      ++++ ++| +++.++.|||+++ +..++++|      ++|||+|+|++|+++ +|+| +++|+++|++++++++   |++
T Consensus       140 ~~~~-~~a-al~~~~~ta~~al-~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~  216 (357)
T 2b5w_A          140 RSQA-ELG-FLIEPISITEKAL-EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTID  216 (357)
T ss_dssp             GGGS-TTG-GGHHHHHHHHHHH-HHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHH
T ss_pred             CCcc-hhh-hhhchHHHHHHHH-HhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHH
Confidence            9999 654 5667899999987 77889999      999999999999999 9999 9999955999999998   988


Q ss_pred             hhhh
Q 026414          234 REFW  237 (239)
Q Consensus       234 ~~~~  237 (239)
                      ++++
T Consensus       217 ~~~~  220 (357)
T 2b5w_A          217 IIEE  220 (357)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8865

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=6.4e-39  Score=283.07  Aligned_cols=206  Identities=23%  Similarity=0.233  Sum_probs=179.0

Q ss_pred             CcccceeEEEEecCC-CCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC-CCCCCeeeeeeEEEEEEEeCCCC
Q 026414            5 GQVITCKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGV   82 (239)
Q Consensus         5 ~~~~~~~a~~~~~~~-~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~vG~Vv~vG~~v   82 (239)
                      ..|.+|||+++++++ +.++++|+|.|+|++|||||||++++||++|++.+.|.++ ...+|.++|||++|+|+++|+++
T Consensus        23 ~m~~~mkA~~~~~~~~~~l~~~e~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~GhE~~G~V~~vG~~v  102 (363)
T 3uog_A           23 MMSKWMQEWSTETVAPHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGKSV  102 (363)
T ss_dssp             CCCSEEEEEEBSCTTTTCCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCTTCCCCSSBCCCCEEEEEEEEECTTC
T ss_pred             cCchhhEEEEEccCCCCCcEEEeeeCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCcCcccceEEEEEEECCCC
Confidence            456789999999664 3599999999999999999999999999999999988765 34789999999999999999999


Q ss_pred             CCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCC-CceeccCCccccccCCcceeeecCCcceeeeEEEecceeE
Q 026414           83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG-AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA  161 (239)
Q Consensus        83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~-~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  161 (239)
                      ++|++||||++.+..      .|..+. +.|.+...... .|.. .+|                  +|+||+++|.+.++
T Consensus       103 ~~~~vGDrV~~~~~~------~c~~g~-~~c~~~~~~~~~~g~~-~~G------------------~~aey~~v~~~~~~  156 (363)
T 3uog_A          103 TRFRPGDRVISTFAP------GWLDGL-RPGTGRTPAYETLGGA-HPG------------------VLSEYVVLPEGWFV  156 (363)
T ss_dssp             CSCCTTCEEEECSST------TCCSSS-CCSCSSCCCCCCTTTT-SCC------------------CCBSEEEEEGGGEE
T ss_pred             CCCCCCCEEEEeccc------cccccc-cccccccccccccCcC-CCC------------------cceeEEEechHHeE
Confidence            999999999987653      566777 77864221111 2222 333                  99999999999999


Q ss_pred             ecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       162 ~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++|+++++++||.+++++.|||+++.+..++++|++|||+|+|++|++++|+|+++|+ +|++++++++|++++++
T Consensus       157 ~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~  231 (363)
T 3uog_A          157 AAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFA  231 (363)
T ss_dssp             ECCTTSCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             ECCCCCCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHH
Confidence            9999999999999999999999988888999999999999999999999999999999 99999999999998865

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=100.00  E-value=9.9e-40  Score=292.14  Aligned_cols=210  Identities=24%  Similarity=0.327  Sum_probs=180.8

Q ss_pred             cccceeEEEEecCCCCeEEEeecCCC-CCCCeEEEEEeEeeechhhhhhhcCCC------C-CCCCCeeeeeeEEEEEEE
Q 026414            6 QVITCKAAVAWEPNKPLVIEDVQVAP-PQAGEVRIKILFTALCHTDAYTWSGKD------P-EGLFPCILGHEAAGIVES   77 (239)
Q Consensus         6 ~~~~~~a~~~~~~~~~~~~~~~~~p~-~~~~eVlVkv~~~~i~~~D~~~~~g~~------~-~~~~p~~~G~e~vG~Vv~   77 (239)
                      .+.+|++.++..++. ++++++|.|+ |++|||||||++++||++|++.+.|..      + ...+|.++|||++|+|++
T Consensus        27 ~~~~m~a~~~~~~~~-l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~P~i~G~E~~G~V~~  105 (404)
T 3ip1_A           27 GKLTWLGSKVWRYPE-VRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVE  105 (404)
T ss_dssp             TTBBSCGGGTEEEEE-EEEEEECCCCCCSTTEEEEEEEEEECCHHHHHHHCBCTTSBBSCCSCBCSSEECCCEEEEEEEE
T ss_pred             hhhhcceEEEEeCCc-eEEEEcCCCCCCCcCEEEEEEeEeeeCHHHHHHhcCCCCccccccccCCCCcccCccceEEEEE
Confidence            344555555554444 8999999999 999999999999999999999987642      1 236899999999999999


Q ss_pred             eCCCC------CCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceee
Q 026414           78 VGEGV------TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQ  151 (239)
Q Consensus        78 vG~~v------~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~  151 (239)
                      +|+++      ++|++||||++.+...|+.|.+|++++.+.|.+...   .|.. .+|                  +|+|
T Consensus       106 vG~~v~~~~~~~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~g~~-~~G------------------~~ae  163 (404)
T 3ip1_A          106 AGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNE---LGFN-VDG------------------AFAE  163 (404)
T ss_dssp             ECTTCEETTTTEECCTTCEEEECSEECCSCSHHHHTTCGGGCTTCEE---BTTT-BCC------------------SSBS
T ss_pred             ECCCccccccCCCCCCCCEEEECCccCCCCCHHHHCcCcccCccccc---cCCC-CCC------------------CCcc
Confidence            99999      889999999999999999999999999999997653   3332 334                  9999


Q ss_pred             eEEEecceeEecCCCCC------chhhhhcccccchhhhhhhhh-cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEE
Q 026414          152 YTVVHDVSVAKIDPQAP------LDKVCLLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIG  224 (239)
Q Consensus       152 ~~~~~~~~~~~~p~~~~------~~~aa~l~~~~~ta~~~~~~~-~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~  224 (239)
                      |+++|.+.++++|++++      +.+++.+..++.|||+++... .++++|++|||+|+|++|++++|+|+++|+.+|++
T Consensus       164 y~~v~~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~  243 (404)
T 3ip1_A          164 YVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVIL  243 (404)
T ss_dssp             EEEEEGGGEEECGGGBTTBCTHHHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEE
T ss_pred             eEEechHHeEeccccccccccccchhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            99999999999999875      455888888999999988655 48999999999999999999999999999989999


Q ss_pred             EcCChhhHhhhhhc
Q 026414          225 IDIDPKKFDREFWS  238 (239)
Q Consensus       225 ~~~~~~~~~~~~~~  238 (239)
                      ++++++|+++++++
T Consensus       244 ~~~~~~~~~~~~~l  257 (404)
T 3ip1_A          244 SEPSEVRRNLAKEL  257 (404)
T ss_dssp             ECSCHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHc
Confidence            99999999988653

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=4.3e-39  Score=282.04  Aligned_cols=204  Identities=25%  Similarity=0.411  Sum_probs=181.6

Q ss_pred             eeEEEEecC-CCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414           10 CKAAVAWEP-NKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (239)
Q Consensus        10 ~~a~~~~~~-~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G   88 (239)
                      |||+++... ...++++|.|.|+|++|||||||++++||++|++++.|.++. ++|.++|||++|+|+++|+++++|++|
T Consensus         1 MKA~v~~~~~~~~~~l~e~~~P~~~p~eVLVkv~a~gic~~D~~~~~G~~~~-~~p~i~GhE~aG~V~~vG~~V~~~~~G   79 (348)
T 4eez_A            1 MKAAVVRHNPDGYADLVEKELRAIKPNEALLDMEYCGVCHTDLHVAAGDFGN-KAGTVLGHEGIGIVKEIGADVSSLQVG   79 (348)
T ss_dssp             CEEEEECSSCCSSEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTTTCC-CTTCBCCSEEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEEcCCCCcEEEEEeECCCCCCCEEEEEEEEEEECHHHHHHhcCCCCC-CCCcccceeEEEEEEEECceeeecccC
Confidence            899988643 345999999999999999999999999999999999998754 689999999999999999999999999


Q ss_pred             CEEeecCcc-CCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCC
Q 026414           89 DHVIPCYQA-ECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (239)
Q Consensus        89 d~V~~~~~~-~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~  167 (239)
                      |||.+.+.. .|+.|.+|..+..+.|.....   .+.. .+|                  +|+||+.++...++++|+++
T Consensus        80 drV~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~-~~G------------------~~ae~~~~~~~~~~~iP~~~  137 (348)
T 4eez_A           80 DRVSVAWFFEGCGHCEYCVSGNETFCREVKN---AGYS-VDG------------------GMAEEAIVVADYAVKVPDGL  137 (348)
T ss_dssp             CEEEEESEEECCSSSHHHHTTCGGGCTTCEE---BTTT-BCC------------------SSBSEEEEEGGGSCBCCTTS
T ss_pred             CeEeecccccccCccccccCCcccccccccc---cccc-cCC------------------cceeeccccccceeecCCCC
Confidence            999887754 568999999999999987654   2222 334                  99999999999999999999


Q ss_pred             CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++++|+.+++++.|+|+++ +..++++|++|||+|+|++|.+++++++.++..+|++++++++|++++++
T Consensus       138 ~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~  206 (348)
T 4eez_A          138 DPIEASSITCAGVTTYKAI-KVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKK  206 (348)
T ss_dssp             CHHHHHHHHHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHH
T ss_pred             CHHHHhhcccceeeEEeee-cccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhh
Confidence            9999999999999999966 67889999999999999999999999998865599999999999998865

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=5.7e-38  Score=284.01  Aligned_cols=213  Identities=19%  Similarity=0.209  Sum_probs=181.3

Q ss_pred             CCCCcccceeEEEEecCC-------------CCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhc-------------
Q 026414            2 STEGQVITCKAAVAWEPN-------------KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-------------   55 (239)
Q Consensus         2 ~~~~~~~~~~a~~~~~~~-------------~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~-------------   55 (239)
                      ++.+.|.+|||+++++++             +.++++|+|.|+|++|||||||++++||++|++...             
T Consensus        17 ~~~~~p~tmkA~v~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVrV~a~gic~sD~~~~~~~~~~~~~~~~~~   96 (447)
T 4a0s_A           17 EAAPVPDTYLALHLRAEDADMFKGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQN   96 (447)
T ss_dssp             HHSCCCSEEEEEEEEGGGTTTTTTCSSCCHHHHCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSCHHHHHHHH
T ss_pred             hccCCChhheeeeeeccccccccccccCCCCCCceEEeccCCCCCCCeEEEEEEEEEECcHHhhhhccCcccchhhhhhh
Confidence            345788999999999988             349999999999999999999999999999985432             


Q ss_pred             ---CCCC-CCCCC-eeeeeeEEEEEEEeCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCc
Q 026414           56 ---GKDP-EGLFP-CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK  130 (239)
Q Consensus        56 ---g~~~-~~~~p-~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~  130 (239)
                         +.+. ...+| .++|||++|+|+++|+++++|++||||++.+...|+.|..| .+..+.|.+...   .|+...+  
T Consensus        97 ~~~g~~~~~~~~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~~~~~~-~~~~~~c~~~~~---~G~~~~~--  170 (447)
T 4a0s_A           97 ARQGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEPAT-HGDGMLGTEQRA---WGFETNF--  170 (447)
T ss_dssp             HTTCGGGGGGCCSEEECCSCEEEEEEEECTTCCSCCTTCEEEECSEECCTTSGGG-GTCTTCSTTCEE---TTTTSSS--
T ss_pred             cccCccccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEecCcCcCccccc-cccccccccccc---ccccCCC--
Confidence               1111 12456 69999999999999999999999999999998888888755 467788876553   3332122  


Q ss_pred             cccccCCcceeeecCCcceeeeEEEecceeEecCCCCCchhhhhcccccchhhhhhhh--hcCCCCCCEEEEEcC-CHHH
Q 026414          131 SRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN--TAKVEPGSIVAVFGL-GTVG  207 (239)
Q Consensus       131 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~--~~~~~~g~~vlI~G~-g~~g  207 (239)
                                      |+|+||+++|.+.++++|+++++++|+.+++++.|||+++..  ..++++|++|||+|+ |++|
T Consensus       171 ----------------G~~aey~~v~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG  234 (447)
T 4a0s_A          171 ----------------GGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLG  234 (447)
T ss_dssp             ----------------CSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHH
T ss_pred             ----------------CceeeeeecCHHHcEECCCCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHH
Confidence                            399999999999999999999999999998899999998864  388999999999998 9999


Q ss_pred             HHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          208 LAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       208 ~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++++|+++++|+ ++++++++++|++++++
T Consensus       235 ~~a~qla~~~Ga-~vi~~~~~~~~~~~~~~  263 (447)
T 4a0s_A          235 SYAIQFVKNGGG-IPVAVVSSAQKEAAVRA  263 (447)
T ss_dssp             HHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHHHcCC-EEEEEeCCHHHHHHHHh
Confidence            999999999999 88899999999988865

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=1.3e-37  Score=269.46  Aligned_cols=183  Identities=14%  Similarity=0.145  Sum_probs=165.6

Q ss_pred             ccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414            7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (239)
Q Consensus         7 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~   86 (239)
                      +.+|||+++++..+.++++++|.|+|++|||||||++++||++|++.+.|.++...+|.++|||++|+|+++|+++++|+
T Consensus         2 M~tMka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~   81 (315)
T 3goh_A            2 MEQHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINWSNGHVPGVDGAGVIVKVGAKVDSKM   81 (315)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHHCTTCCCTTCCCCSEEEEEEEEECTTSCGGG
T ss_pred             CcceEEEEEeCCCCeeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHcCCCCcCCCCCEeeeeeEEEEEEeCCCCCCCC
Confidence            34799999995333499999999999999999999999999999999998876668899999999999999999999999


Q ss_pred             CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (239)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~  166 (239)
                      +||||+..+...                            .+|                  +|+||+.+|.+.++++|++
T Consensus        82 vGdrV~~~~~~~----------------------------~~G------------------~~aey~~v~~~~~~~iP~~  115 (315)
T 3goh_A           82 LGRRVAYHTSLK----------------------------RHG------------------SFAEFTVLNTDRVMTLPDN  115 (315)
T ss_dssp             TTCEEEEECCTT----------------------------SCC------------------SSBSEEEEETTSEEECCTT
T ss_pred             CCCEEEEeCCCC----------------------------CCc------------------ccccEEEEcHHHhccCcCC
Confidence            999998654210                            233                  9999999999999999999


Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      +++++||.+++++.|||+++ +..++++|++|||+|+|++|++++|+|+++|+ +|++++ +++|+++++++
T Consensus       116 ~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~l  184 (315)
T 3goh_A          116 LSFERAAALPCPLLTAWQAF-EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKR  184 (315)
T ss_dssp             SCHHHHHTSHHHHHHHHHHH-TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHH
T ss_pred             CCHHHHhhCccHHHHHHHHH-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHc
Confidence            99999999999999999988 89999999999999999999999999999999 999999 88998888653

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=5.3e-38  Score=285.01  Aligned_cols=213  Identities=19%  Similarity=0.188  Sum_probs=182.0

Q ss_pred             CCCCcccceeEEEEecC---------------CCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCC--------
Q 026414            2 STEGQVITCKAAVAWEP---------------NKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD--------   58 (239)
Q Consensus         2 ~~~~~~~~~~a~~~~~~---------------~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~--------   58 (239)
                      ++.++|.+|||++++++               ++.++++++|.|+|++|||||||++++||++|++...+..        
T Consensus        23 ~~~~iP~tmkA~v~~~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~~~~~~~~~~~  102 (456)
T 3krt_A           23 AALPLPESYRAITVHKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLE  102 (456)
T ss_dssp             HHSCCCSCEEEEEEEGGGTTTTTTCCGGGCCHHHHCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTCSSCSHHHHH
T ss_pred             ccCCCCcceEEEEEeccccccccccccccCCCCCCcEEEEccCCCCCCCeEEEEEEEEEecchhhhhhhcCcccchhhhh
Confidence            34568899999999987               2459999999999999999999999999999987643211        


Q ss_pred             ---------CCCCCC-eeeeeeEEEEEEEeCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccC
Q 026414           59 ---------PEGLFP-CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND  128 (239)
Q Consensus        59 ---------~~~~~p-~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~  128 (239)
                               ....+| .++|||++|+|+++|+++++|++||+|++.+. .|..|..|..+..+.|.+...   .|+...+
T Consensus       103 ~~g~~~~~~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~-~c~~~~~~~~~~~~~c~~~~~---~G~~~~~  178 (456)
T 3krt_A          103 RYGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCL-SVELESSDGHNDTMLDPEQRI---WGFETNF  178 (456)
T ss_dssp             HHHTSCHHHHTTCCSEEECCSCCEEEEEEECTTCCSCCTTCEEEECCE-ECCCCSGGGTTSGGGCTTCEE---TTTTSSS
T ss_pred             hccccccccccCCCCcccccceeEEEEEEECCCCCCCCCCCEEEEeCC-cccccccccccccccCccccc---cccCCCC
Confidence                     012466 69999999999999999999999999998654 688888888888888986654   3332122


Q ss_pred             CccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCchhhhhcccccchhhhhhhhh--cCCCCCCEEEEEcC-CH
Q 026414          129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT--AKVEPGSIVAVFGL-GT  205 (239)
Q Consensus       129 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~--~~~~~g~~vlI~G~-g~  205 (239)
                                        |+|+||+++|.+.++++|+++++++||.+++++.|||+++...  .++++|++|||+|+ |+
T Consensus       179 ------------------G~~aey~~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~  240 (456)
T 3krt_A          179 ------------------GGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGG  240 (456)
T ss_dssp             ------------------CSSBSEEEEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSH
T ss_pred             ------------------CcccceEEechHHeeECCCCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCH
Confidence                              4999999999999999999999999999988999999988654  78999999999998 99


Q ss_pred             HHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          206 VGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       206 ~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +|++++|+|+++|+ ++++++++++|++++++
T Consensus       241 vG~~avqlak~~Ga-~vi~~~~~~~~~~~~~~  271 (456)
T 3krt_A          241 LGSYATQFALAGGA-NPICVVSSPQKAEICRA  271 (456)
T ss_dssp             HHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-eEEEEECCHHHHHHHHh
Confidence            99999999999999 88888899999998865

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=100.00  E-value=4.4e-38  Score=277.92  Aligned_cols=203  Identities=21%  Similarity=0.269  Sum_probs=173.3

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCC-CeEEEEEeEeeechhhhhhhcC--CCCCCCC---CeeeeeeEEEEEEEeCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQA-GEVRIKILFTALCHTDAYTWSG--KDPEGLF---PCILGHEAAGIVESVGEGVT   83 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~-~eVlVkv~~~~i~~~D~~~~~g--~~~~~~~---p~~~G~e~vG~Vv~vG~~v~   83 (239)
                      |||+++++++++++++++|.|+|++ |||||||++++||++|++.+.|  .++...+   |.++|||++|+|++  ++ +
T Consensus         1 MkA~~~~~~g~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~--~~-~   77 (366)
T 2cdc_A            1 MKAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDFLVLGHEAIGVVEE--SY-H   77 (366)
T ss_dssp             CEEEEECTTSCCCEEEECCGGGSCCCSSEEEEEEEEEECHHHHHHHTTCC-------CCSCEECCSEEEEEECS--CC-S
T ss_pred             CeEEEEeCCCCceEEEECcCCCCCCCCEEEEEEEEEeeccccHHHHcCCCCCCCCCcCCCCCcCCcceEEEEEe--CC-C
Confidence            7999999988779999999999999 9999999999999999999998  5443356   89999999999999  66 8


Q ss_pred             CCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEec
Q 026414           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (239)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  163 (239)
                      +|++||||++.+..+|++|.+|++++.+.|.+.... ..|....+                  |+|+||+++|.+.++++
T Consensus        78 ~~~~GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~-~~g~~~~~------------------G~~aey~~v~~~~~~~i  138 (366)
T 2cdc_A           78 GFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFG-EAGIHKMD------------------GFMREWWYDDPKYLVKI  138 (366)
T ss_dssp             SCCTTCEEEECSEECCSSSHHHHTTCGGGCSSSCCE-EETTBEEC------------------CSCBSEEEECGGGEEEE
T ss_pred             CCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCcc-cCCccCCC------------------CceeEEEEechHHeEEC
Confidence            899999999999999999999999999999975431 00211012                  49999999999999999


Q ss_pred             CCCCCchhhhhcccccchhhhhhh--h--hcCCC--C-------CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh-
Q 026414          164 DPQAPLDKVCLLGCGVPTGLGAVW--N--TAKVE--P-------GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP-  229 (239)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~~~--~--~~~~~--~-------g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~-  229 (239)
                      |++++ ++|+ ++.++.|||+++.  .  ..+++  +       |++|||+|+|++|++++|+++.+|+ +|+++++++ 
T Consensus       139 P~~l~-~~Aa-l~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~  215 (366)
T 2cdc_A          139 PKSIE-DIGI-LAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREP  215 (366)
T ss_dssp             CGGGT-TTGG-GHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCC
T ss_pred             cCCcc-hhhh-hcCcHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCcc
Confidence            99999 7775 5668899999886  4  77888  8       9999999999999999999999999 999999998 


Q ss_pred             --hhHhhhhh
Q 026414          230 --KKFDREFW  237 (239)
Q Consensus       230 --~~~~~~~~  237 (239)
                        +|++++++
T Consensus       216 ~~~~~~~~~~  225 (366)
T 2cdc_A          216 TEVEQTVIEE  225 (366)
T ss_dssp             CHHHHHHHHH
T ss_pred             chHHHHHHHH
Confidence              88887754

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=9e-37  Score=267.39  Aligned_cols=189  Identities=28%  Similarity=0.306  Sum_probs=165.4

Q ss_pred             CCCCCcccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC--CCCCeeeeeeEEEEEEEe
Q 026414            1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE--GLFPCILGHEAAGIVESV   78 (239)
Q Consensus         1 m~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~--~~~p~~~G~e~vG~Vv~v   78 (239)
                      ||  ..|.+|||+++.+++++++++|+|.|+|++|||||||++++||++|++++.|....  ..+|.++|||++|+|+++
T Consensus         1 Ms--~~~~~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~P~v~G~E~~G~V~~v   78 (343)
T 3gaz_A            1 MS--LTTPTMIAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAV   78 (343)
T ss_dssp             -------CEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCCGGGCCCSSBCCCCEEEEEEEEE
T ss_pred             CC--CCchhheEEEEecCCCceEEEeccCCCCCCCEEEEEEEEEEeCHhhHHHhCCCCCCCCCCCCcccCcceEEEEEEE
Confidence            56  45788999999999988999999999999999999999999999999999886432  468999999999999999


Q ss_pred             CCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc
Q 026414           79 GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV  158 (239)
Q Consensus        79 G~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  158 (239)
                      |+++++|++||||..+..                          |....+|                  +|+||+++|.+
T Consensus        79 G~~v~~~~vGdrV~~~~~--------------------------g~~~~~G------------------~~aey~~v~~~  114 (343)
T 3gaz_A           79 GPEVDSFRVGDAVFGLTG--------------------------GVGGLQG------------------THAQFAAVDAR  114 (343)
T ss_dssp             CTTCCSCCTTCEEEEECC--------------------------SSTTCCC------------------SSBSEEEEEGG
T ss_pred             CCCCCCCCCCCEEEEEeC--------------------------CCCCCCc------------------ceeeEEEecHH
Confidence            999999999999986432                          0000233                  99999999999


Q ss_pred             eeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          159 SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       159 ~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      .++++|+++++++|+.+++++.|||+++.+..++++|++|||+|+ |++|++++|+++..|+ +|+++ .+++|++++++
T Consensus       115 ~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~  192 (343)
T 3gaz_A          115 LLASKPAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRD  192 (343)
T ss_dssp             GEEECCTTSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHH
T ss_pred             HeeeCCCCCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHH
Confidence            999999999999999999999999998888999999999999995 9999999999999999 89999 78888888765

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=1.6e-36  Score=266.85  Aligned_cols=186  Identities=20%  Similarity=0.177  Sum_probs=168.2

Q ss_pred             CCCCcccceeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCC-CCCeeeeeeEEEEEEEe
Q 026414            2 STEGQVITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESV   78 (239)
Q Consensus         2 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~-~~p~~~G~e~vG~Vv~v   78 (239)
                      ++++.|.+|||+++.+++.+  +++++.|.|+|++|||||||++++||++|++.+.|.++.. .+|.++|||++|+|+++
T Consensus        21 ~~~~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~v  100 (353)
T 4dup_A           21 QSMSLPQEMRFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPILGLELSGEIVGV  100 (353)
T ss_dssp             --CCCCSSEEEEEESSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTSSCCCTTSCSSSCCEEEEEEEEE
T ss_pred             ecCCCChheeEEEEccCCCccceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCccccccEEEEEEE
Confidence            34567899999999987765  9999999999999999999999999999999999876543 57899999999999999


Q ss_pred             CCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc
Q 026414           79 GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV  158 (239)
Q Consensus        79 G~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  158 (239)
                      |+++++|++||||+...                               .+|                  +|+||+++|.+
T Consensus       101 G~~v~~~~vGdrV~~~~-------------------------------~~G------------------~~aey~~v~~~  131 (353)
T 4dup_A          101 GPGVSGYAVGDKVCGLA-------------------------------NGG------------------AYAEYCLLPAG  131 (353)
T ss_dssp             CTTCCSCCTTCEEEEEC-------------------------------SSC------------------CSBSEEEEEGG
T ss_pred             CCCCCCCCCCCEEEEec-------------------------------CCC------------------ceeeEEEEcHH
Confidence            99999999999997532                               223                  99999999999


Q ss_pred             eeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          159 SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       159 ~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      .++++|+++++++||.++.++.|||+++.+..++++|++|||+|+ |++|++++|+++..|+ +|++++++++|++++++
T Consensus       132 ~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~  210 (353)
T 4dup_A          132 QILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACER  210 (353)
T ss_dssp             GEEECCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             HcEeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh
Confidence            999999999999999999999999998888999999999999965 9999999999999999 89999999999988765

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=3.4e-36  Score=263.60  Aligned_cols=182  Identities=24%  Similarity=0.242  Sum_probs=167.0

Q ss_pred             CcccceeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCC
Q 026414            5 GQVITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEG   81 (239)
Q Consensus         5 ~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~   81 (239)
                      +.|.+|||+++.+.+++  ++++|+|.|+|++|||||||++++||++|++.+.|.++. ..+|.++|||++|+|+++|++
T Consensus        17 ~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~   96 (342)
T 4eye_A           17 QGPGSMKAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVPGIETAGVVRSAPEG   96 (342)
T ss_dssp             -CCCEEEEEEECSSSGGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSSSCCCSSBCCCSEEEEEEEECCTT
T ss_pred             cCCcceEEEEEecCCCCceeEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCccceeEEEEEEEECCC
Confidence            56899999999987765  999999999999999999999999999999999987643 368999999999999999999


Q ss_pred             CCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeE
Q 026414           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA  161 (239)
Q Consensus        82 v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  161 (239)
                      ++ |++||||+...                               .+|                  +|+||+.++.+.++
T Consensus        97 v~-~~vGDrV~~~~-------------------------------~~G------------------~~aey~~v~~~~~~  126 (342)
T 4eye_A           97 SG-IKPGDRVMAFN-------------------------------FIG------------------GYAERVAVAPSNIL  126 (342)
T ss_dssp             SS-CCTTCEEEEEC-------------------------------SSC------------------CSBSEEEECGGGEE
T ss_pred             CC-CCCCCEEEEec-------------------------------CCC------------------cceEEEEEcHHHeE
Confidence            99 99999998542                               223                  99999999999999


Q ss_pred             ecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       162 ~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++|+++++++|+.+++++.|||+++.+..++++|++|||+|+ |++|++++|+++++|+ +|++++++++|++++++
T Consensus       127 ~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~  202 (342)
T 4eye_A          127 PTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKS  202 (342)
T ss_dssp             ECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH
T ss_pred             ECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh
Confidence            999999999999999999999998888999999999999998 9999999999999999 99999999999988765

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=3.7e-36  Score=262.34  Aligned_cols=184  Identities=27%  Similarity=0.284  Sum_probs=165.8

Q ss_pred             CCCCCcccceeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEe
Q 026414            1 MSTEGQVITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESV   78 (239)
Q Consensus         1 m~~~~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~v   78 (239)
                      |+. +.|.+|||+++++++++  ++++++|.|+|++|||||||++++||++|++++.|.++. .+|.++|||++|+|+++
T Consensus         1 M~~-~~p~~mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~-~~P~i~G~e~~G~V~~v   78 (334)
T 3qwb_A            1 MKC-TIPEQQKVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPC-EKPYVLGREASGTVVAK   78 (334)
T ss_dssp             -----CCSEEEEEEESSSSSGGGEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHHTSSCC-CSSEECCSEEEEEEEEE
T ss_pred             CCC-CCchheEEEEEecCCCCceeEEEeccCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCC-CCCCccccceEEEEEEE
Confidence            543 57899999999998875  999999999999999999999999999999999987653 58999999999999999


Q ss_pred             CCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEe-c
Q 026414           79 GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH-D  157 (239)
Q Consensus        79 G~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~-~  157 (239)
                      |+++++|++||||...                                .+|                  +|+||+.++ .
T Consensus        79 G~~v~~~~~GdrV~~~--------------------------------~~G------------------~~aey~~v~~~  108 (334)
T 3qwb_A           79 GKGVTNFEVGDQVAYI--------------------------------SNS------------------TFAQYSKISSQ  108 (334)
T ss_dssp             CTTCCSCCTTCEEEEE--------------------------------CSS------------------CSBSEEEEETT
T ss_pred             CCCCCCCCCCCEEEEe--------------------------------eCC------------------cceEEEEecCc
Confidence            9999999999999853                                123                  999999999 9


Q ss_pred             ceeEecCCCCCchh---hhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414          158 VSVAKIDPQAPLDK---VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (239)
Q Consensus       158 ~~~~~~p~~~~~~~---aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~  233 (239)
                      +.++++|+++++++   ++.+++.+.|||+++....++++|++|||+|+ |++|++++|+++.+|+ +|++++++++|++
T Consensus       109 ~~~~~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~  187 (334)
T 3qwb_A          109 GPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLK  187 (334)
T ss_dssp             SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHH
T ss_pred             ceEEECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            99999999999999   88888899999998878889999999999985 9999999999999999 9999999999998


Q ss_pred             hhhh
Q 026414          234 REFW  237 (239)
Q Consensus       234 ~~~~  237 (239)
                      ++++
T Consensus       188 ~~~~  191 (334)
T 3qwb_A          188 IAKE  191 (334)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8765

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=100.00  E-value=4.4e-36  Score=265.67  Aligned_cols=187  Identities=20%  Similarity=0.165  Sum_probs=159.7

Q ss_pred             CcccceeEEEEecCCCCeEEE-eecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCC
Q 026414            5 GQVITCKAAVAWEPNKPLVIE-DVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT   83 (239)
Q Consensus         5 ~~~~~~~a~~~~~~~~~~~~~-~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~   83 (239)
                      +.|.+|||++++++++ ++++ ++|.|+|++|||||||++++||++|++.+.+.   ..+|.++|||++|+|+++|++++
T Consensus         7 ~~p~~mkA~v~~~~~~-l~~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~---~~~p~v~G~e~~G~V~~vG~~v~   82 (371)
T 3gqv_A            7 IPPPQQTALTVNDHDE-VTVWNAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQF---ATPWAFLGTDYAGTVVAVGSDVT   82 (371)
T ss_dssp             CCCSCEEEEEECTTSC-EEEEEEECCCCCCTTSEEEEEEEEECCGGGGC--------CCTTSCCCSEEEEEEEEECTTCC
T ss_pred             CCchhceeEEEcCCCc-eEEeccCCCCCCCCCEEEEEEEEEEcCHHHHHHhhcC---CCCCccCccccEEEEEEeCCCCC
Confidence            5678999999999977 9998 99999999999999999999999999988763   24689999999999999999999


Q ss_pred             CCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEec
Q 026414           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (239)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  163 (239)
                      +|++||||+.       .|..|..+..                .+|                  +|+||+++|.+.++++
T Consensus        83 ~~~~GdrV~~-------~~~~~~~~~~----------------~~G------------------~~aey~~v~~~~~~~~  121 (371)
T 3gqv_A           83 HIQVGDRVYG-------AQNEMCPRTP----------------DQG------------------AFSQYTVTRGRVWAKI  121 (371)
T ss_dssp             SCCTTCEEEE-------ECCTTCTTCT----------------TCC------------------SSBSEEECCTTCEEEC
T ss_pred             CCCCCCEEEE-------eccCCCCCCC----------------CCC------------------cCcCeEEEchhheEEC
Confidence            9999999964       3444433210                334                  9999999999999999


Q ss_pred             CCCCCchhhhhcccccchhhhhhhhh-cCC-----------CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          164 DPQAPLDKVCLLGCGVPTGLGAVWNT-AKV-----------EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~~~~~-~~~-----------~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      |+++++++|+.+++++.|||+++.+. .++           ++|++|||+|+ |++|++++|+|+++|+ +|+++. +++
T Consensus       122 P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~~  199 (371)
T 3gqv_A          122 PKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SPH  199 (371)
T ss_dssp             CTTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CGG
T ss_pred             CCCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCccccccccCCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CHH
Confidence            99999999999999999999988776 442           89999999998 9999999999999999 888886 788


Q ss_pred             hHhhhhhc
Q 026414          231 KFDREFWS  238 (239)
Q Consensus       231 ~~~~~~~~  238 (239)
                      |+++++++
T Consensus       200 ~~~~~~~l  207 (371)
T 3gqv_A          200 NFDLAKSR  207 (371)
T ss_dssp             GHHHHHHT
T ss_pred             HHHHHHHc
Confidence            88887653

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=4.4e-36  Score=262.59  Aligned_cols=180  Identities=20%  Similarity=0.226  Sum_probs=166.4

Q ss_pred             cceeEEEEecCCCC---eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCC
Q 026414            8 ITCKAAVAWEPNKP---LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVT   83 (239)
Q Consensus         8 ~~~~a~~~~~~~~~---~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~   83 (239)
                      ++||++++++++++   ++++++|.|+|++|||||||++++||++|++.+.|.++. ..+|.++|||++|+|+++|++++
T Consensus         3 ~~mka~~~~~~g~p~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~v~   82 (340)
T 3gms_A            3 LHGKLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAFVS   82 (340)
T ss_dssp             CEEEEEEESSCSCHHHHEEEEEEECCCCCTTEEEEEEEEEECCHHHHGGGGTTTTTTSCSSBCCCSCCEEEEEEECTTSC
T ss_pred             cccEEEEEecCCCchheEEEEecCCCCCCCCEEEEEEEEecCCHHHHHHhcCCCCCCCCCCCcCCcceEEEEEEeCCCCC
Confidence            68999999999987   999999999999999999999999999999999987654 37899999999999999999999


Q ss_pred             CCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEec
Q 026414           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (239)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  163 (239)
                      +|++||||+...                               .+|                  +|+||+++|.+.++++
T Consensus        83 ~~~vGdrV~~~~-------------------------------~~G------------------~~aey~~v~~~~~~~v  113 (340)
T 3gms_A           83 RELIGKRVLPLR-------------------------------GEG------------------TWQEYVKTSADFVVPI  113 (340)
T ss_dssp             GGGTTCEEEECS-------------------------------SSC------------------SSBSEEEEEGGGEEEC
T ss_pred             CCCCCCEEEecC-------------------------------CCc------------------cceeEEEcCHHHeEEC
Confidence            999999997431                               223                  9999999999999999


Q ss_pred             CCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      |+++++++||.+++...|+|+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|++++++++|++++++
T Consensus       114 P~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~  187 (340)
T 3gms_A          114 PDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLR  187 (340)
T ss_dssp             CTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH
T ss_pred             CCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh
Confidence            9999999999999999999999989999999999999998 6999999999999999 99999999999888764

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=5e-36  Score=260.72  Aligned_cols=179  Identities=27%  Similarity=0.322  Sum_probs=165.8

Q ss_pred             eeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (239)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~   87 (239)
                      |||+++++++++  ++++|.|.|+|++|||||||++++||++|++.+.|.++...+|.++|||++|+|+++|+++++|++
T Consensus         2 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~~   81 (325)
T 3jyn_A            2 AKRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPSGLGAEGAGVVEAVGDEVTRFKV   81 (325)
T ss_dssp             EEEEEBSSCSSGGGCEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCCCEEEEEEEECTTCCSCCT
T ss_pred             cEEEEEecCCCcceeEEeecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCceeEEEEEEECCCCCCCCC
Confidence            899999988876  999999999999999999999999999999999998776678999999999999999999999999


Q ss_pred             CCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCC
Q 026414           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (239)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~  167 (239)
                      ||+|.....                              .+|                  +|+||+.+|.+.++++|+++
T Consensus        82 GdrV~~~~~------------------------------~~G------------------~~aey~~v~~~~~~~~P~~~  113 (325)
T 3jyn_A           82 GDRVAYGTG------------------------------PLG------------------AYSEVHVLPEANLVKLADSV  113 (325)
T ss_dssp             TCEEEESSS------------------------------SSC------------------CSBSEEEEEGGGEEECCTTS
T ss_pred             CCEEEEecC------------------------------CCc------------------cccceEEecHHHeEECCCCC
Confidence            999985431                              233                  99999999999999999999


Q ss_pred             CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++++|+.+++...|+|+++....++++|++|||+|+ |++|++++|+++.+|+ +|++++++++|++++++
T Consensus       114 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~  183 (325)
T 3jyn_A          114 SFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKA  183 (325)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH
T ss_pred             CHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            999999998899999998888899999999999985 9999999999999999 99999999999988764

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=8.5e-36  Score=258.83  Aligned_cols=184  Identities=22%  Similarity=0.211  Sum_probs=160.9

Q ss_pred             cccceeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCC-----CCCCCCeeeeeeEEEEEEEe
Q 026414            6 QVITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-----PEGLFPCILGHEAAGIVESV   78 (239)
Q Consensus         6 ~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~-----~~~~~p~~~G~e~vG~Vv~v   78 (239)
                      .+++|||+++.+++++  ++++|.|.|+|++|||||||++++||++|++.+.|..     ....+|.++|||++|+|+++
T Consensus         3 ~m~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~v   82 (321)
T 3tqh_A            3 AMKEMKAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIEL   82 (321)
T ss_dssp             --CEEEEEEESSSCSGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEEEEEEE
T ss_pred             ccccceEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEEcCHHHHHHhcCCccccccccCCCCCcccceeEEEEEEe
Confidence            4568999999998876  9999999999999999999999999999999998831     23468999999999999999


Q ss_pred             CCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc
Q 026414           79 GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV  158 (239)
Q Consensus        79 G~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  158 (239)
                      |+++++|++||||+..+..++                           .+|                  +|+||++++.+
T Consensus        83 G~~v~~~~~GdrV~~~~~~~~---------------------------~~G------------------~~aey~~v~~~  117 (321)
T 3tqh_A           83 GSDVNNVNIGDKVMGIAGFPD---------------------------HPC------------------CYAEYVCASPD  117 (321)
T ss_dssp             CTTCCSCCTTCEEEEECSTTT---------------------------CCC------------------CSBSEEEECGG
T ss_pred             CCCCCCCCCCCEEEEccCCCC---------------------------CCC------------------cceEEEEecHH
Confidence            999999999999987542110                           233                  99999999999


Q ss_pred             eeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          159 SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       159 ~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G-~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      .++++|+++++++|+.+++++.|||+++ +..++++|++|||+| +|++|++++|+|+.+|+ +|+++++ +++++++++
T Consensus       118 ~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~~-~~~~~~~~~  194 (321)
T 3tqh_A          118 TIIQKLEKLSFLQAASLPTAGLTALQAL-NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTAS-KRNHAFLKA  194 (321)
T ss_dssp             GEEECCTTSCHHHHHHSHHHHHHHHHHH-HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEEC-HHHHHHHHH
T ss_pred             HhccCCCCCCHHHHhhhhhHHHHHHHHH-HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEec-cchHHHHHH
Confidence            9999999999999999999999999988 889999999999997 59999999999999999 8888874 555776654

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=1.5e-35  Score=259.78  Aligned_cols=181  Identities=22%  Similarity=0.252  Sum_probs=162.9

Q ss_pred             cceeEEEEecCC-----CCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCC
Q 026414            8 ITCKAAVAWEPN-----KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV   82 (239)
Q Consensus         8 ~~~~a~~~~~~~-----~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v   82 (239)
                      ++|||++++++|     +.++++++|.|+|++|||||||++++||++|++.+.|.  ...+|.++|||++|+|+++|+++
T Consensus         1 m~MkA~~~~~~G~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~--~~~~p~i~G~e~~G~V~~vG~~v   78 (346)
T 3fbg_A            1 MSLKAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMD--VSKAPRVLGFDAIGVVESVGNEV   78 (346)
T ss_dssp             -CEEEEEBSSCCCGGGCCCCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHTTSC--CSSSCBCCCCCEEEEEEEECTTC
T ss_pred             CCcEEEEEEeccccCCCceeEeccccCCCCCCCEEEEEEEEEEcCHHHHHHHhCC--CCCCCcCcCCccEEEEEEeCCCC
Confidence            479999999876     35999999999999999999999999999999998886  34689999999999999999999


Q ss_pred             CCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEe
Q 026414           83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK  162 (239)
Q Consensus        83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  162 (239)
                      ++|++||+|+.....                            ..+|                  +|+||+++|.+.+++
T Consensus        79 ~~~~~GdrV~~~~~~----------------------------~~~G------------------~~aey~~v~~~~~~~  112 (346)
T 3fbg_A           79 TMFNQGDIVYYSGSP----------------------------DQNG------------------SNAEYQLINERLVAK  112 (346)
T ss_dssp             CSCCTTCEEEECCCT----------------------------TSCC------------------SSBSEEEEEGGGEEE
T ss_pred             CcCCCCCEEEEcCCC----------------------------CCCc------------------ceeEEEEEChHHeEE
Confidence            999999999854210                            0233                  999999999999999


Q ss_pred             cCCCCCchhhhhcccccchhhhhhhhhcCCC------CCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVE------PGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       163 ~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~------~g~~vlI~G-~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      +|+++++++|+.+++++.|||+++.+..+++      +|++|||+| +|++|++++|+++.+|+ +|++++++++|++++
T Consensus       113 iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~  191 (346)
T 3fbg_A          113 APKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWT  191 (346)
T ss_dssp             CCSSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHH
T ss_pred             CCCCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            9999999999999999999999988888888      999999995 59999999999999999 999999999999988


Q ss_pred             hh
Q 026414          236 FW  237 (239)
Q Consensus       236 ~~  237 (239)
                      ++
T Consensus       192 ~~  193 (346)
T 3fbg_A          192 KK  193 (346)
T ss_dssp             HH
T ss_pred             Hh
Confidence            65

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.3e-35  Score=259.32  Aligned_cols=183  Identities=25%  Similarity=0.374  Sum_probs=163.8

Q ss_pred             cccceeEEEEecCCCC--eEE-EeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCC
Q 026414            6 QVITCKAAVAWEPNKP--LVI-EDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEG   81 (239)
Q Consensus         6 ~~~~~~a~~~~~~~~~--~~~-~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~   81 (239)
                      .|.+|||+++.+++.+  +++ +++|.|+|++|||||||++++||++|++++.|.++. ..+|.++|||++|+|+++|++
T Consensus        26 ~~~~Mka~~~~~~g~~~~l~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~~  105 (351)
T 1yb5_A           26 GQKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDN  105 (351)
T ss_dssp             --CEEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTT
T ss_pred             CcceEEEEEEccCCCcceeEEeeecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcCCceeEEEEEEECCC
Confidence            4567999999987753  888 899999999999999999999999999999887542 367999999999999999999


Q ss_pred             CCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeE
Q 026414           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA  161 (239)
Q Consensus        82 v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  161 (239)
                      +++|++||||+..+.                              .+|                  +|+||+++|.+.++
T Consensus       106 v~~~~vGdrV~~~~~------------------------------~~G------------------~~aey~~v~~~~~~  137 (351)
T 1yb5_A          106 ASAFKKGDRVFTSST------------------------------ISG------------------GYAEYALAADHTVY  137 (351)
T ss_dssp             CTTCCTTCEEEESCC------------------------------SSC------------------SSBSEEEEEGGGEE
T ss_pred             CCCCCCCCEEEEeCC------------------------------CCC------------------cceeEEEECHHHeE
Confidence            999999999985421                              223                  99999999999999


Q ss_pred             ecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       162 ~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++|+++++++||.+++++.|||+++....++++|++|||+|+ |++|++++|+++..|+ +|+++++++++++++++
T Consensus       138 ~~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~  213 (351)
T 1yb5_A          138 KLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ  213 (351)
T ss_dssp             ECCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHH
Confidence            999999999999999999999998877899999999999998 9999999999999999 89999999999887754

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=1e-35  Score=262.64  Aligned_cols=186  Identities=20%  Similarity=0.230  Sum_probs=164.2

Q ss_pred             CcccceeEEEEecC---C--CCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeC
Q 026414            5 GQVITCKAAVAWEP---N--KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVG   79 (239)
Q Consensus         5 ~~~~~~~a~~~~~~---~--~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG   79 (239)
                      ..+++|||++++++   +  +.++++|+|.|+|++|||||||++++||++|++.+.|..+...+|.++|||++|+|+++|
T Consensus        18 ~~m~~MkA~~~~~~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG   97 (363)
T 4dvj_A           18 LYFQSMKAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWKVIGYDAAGIVSAVG   97 (363)
T ss_dssp             -CCCEEEEEEBSSCCCTTSTTSSEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCCC--CCSBCCCCCEEEEEEEEC
T ss_pred             hhhheeEEEEEeccCCCCCCceEEEeecCCCCCCCCEEEEEEEEEEeCHHHHHHHcCCCCCCCCCCcccceeEEEEEEeC
Confidence            45688999999765   2  239999999999999999999999999999999999887666789999999999999999


Q ss_pred             CCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecce
Q 026414           80 EGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS  159 (239)
Q Consensus        80 ~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  159 (239)
                      +++++|++||||+.....                            ..+|                  +|+||+++|.+.
T Consensus        98 ~~v~~~~vGdrV~~~~~~----------------------------~~~G------------------~~aey~~v~~~~  131 (363)
T 4dvj_A           98 PDVTLFRPGDEVFYAGSI----------------------------IRPG------------------TNAEFHLVDERI  131 (363)
T ss_dssp             TTCCSCCTTCEEEECCCT----------------------------TSCC------------------SCBSEEEEEGGG
T ss_pred             CCCCCCCCCCEEEEccCC----------------------------CCCc------------------cceEEEEeCHHH
Confidence            999999999999854210                            0233                  999999999999


Q ss_pred             eEecCCCCCchhhhhcccccchhhhhhhhhcCCC-----CCCEEEEEcC-CHHHHHHHHHHHHc-CCCeEEEEcCChhhH
Q 026414          160 VAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVE-----PGSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKF  232 (239)
Q Consensus       160 ~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~-----~g~~vlI~G~-g~~g~~ai~~~~~~-G~~~vv~~~~~~~~~  232 (239)
                      ++++|+++++++||.+++++.|||+++....+++     +|++|||+|+ |++|++++|+|+++ |+ +|++++++++|+
T Consensus       132 ~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~-~Vi~~~~~~~~~  210 (363)
T 4dvj_A          132 VGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDL-TVIATASRPETQ  210 (363)
T ss_dssp             CEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCS-EEEEECSSHHHH
T ss_pred             eeECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCC-EEEEEeCCHHHH
Confidence            9999999999999999999999999888888888     8999999985 99999999999985 76 999999999999


Q ss_pred             hhhhh
Q 026414          233 DREFW  237 (239)
Q Consensus       233 ~~~~~  237 (239)
                      +++++
T Consensus       211 ~~~~~  215 (363)
T 4dvj_A          211 EWVKS  215 (363)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98865

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=3.1e-35  Score=258.89  Aligned_cols=183  Identities=26%  Similarity=0.352  Sum_probs=159.5

Q ss_pred             CcccceeEEEEecCCCC---eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCC-CCCeeeeeeEEEEEEEeCC
Q 026414            5 GQVITCKAAVAWEPNKP---LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVGE   80 (239)
Q Consensus         5 ~~~~~~~a~~~~~~~~~---~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~-~~p~~~G~e~vG~Vv~vG~   80 (239)
                      ..|.+||++++.+++++   +++++.|.|+|++|||||||++++||++|++.+.|.++.. .+|.++|||++|+|+++|+
T Consensus        22 ~m~~~mka~~~~~~g~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~  101 (357)
T 1zsy_A           22 SMPARVRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAVGS  101 (357)
T ss_dssp             CCCCCEEEEEESSSSCHHHHEEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSEECCSCCEEEEEEECT
T ss_pred             hCchhhEEEEEecCCCccceEEEeeccCCCCCCCEEEEEEEECCCCHHHhhHhcCCCCCCCCCCccccceEEEEEEEeCC
Confidence            35578999999999885   8899999999999999999999999999999999876542 5799999999999999999


Q ss_pred             CCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEeccee
Q 026414           81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV  160 (239)
Q Consensus        81 ~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  160 (239)
                      ++++|++||||+..+.                              .+                  |+|+||+++|.+.+
T Consensus       102 ~v~~~~vGdrV~~~~~------------------------------~~------------------G~~aey~~v~~~~~  133 (357)
T 1zsy_A          102 NVTGLKPGDWVIPANA------------------------------GL------------------GTWRTEAVFSEEAL  133 (357)
T ss_dssp             TCCSCCTTCEEEESSS------------------------------CS------------------CCSBSEEEEEGGGE
T ss_pred             CCCCCCCCCEEEEcCC------------------------------CC------------------ccceeEEecCHHHc
Confidence            9999999999986431                              12                  39999999999999


Q ss_pred             EecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC-hh---hHhhh
Q 026414          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID-PK---KFDRE  235 (239)
Q Consensus       161 ~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~-~~---~~~~~  235 (239)
                      +++|+++++++||.+++++.|||+++....++++|++|||+|+ |++|++++|+|+.+|+ +++++.++ ++   +++++
T Consensus       134 ~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~  212 (357)
T 1zsy_A          134 IQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGL-RTINVVRDRPDIQKLSDRL  212 (357)
T ss_dssp             EEECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEECCCSCHHHHHHHH
T ss_pred             EECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCC-EEEEEecCccchHHHHHHH
Confidence            9999999999999999889999998878889999999999998 9999999999999999 55555543 32   44555


Q ss_pred             h
Q 026414          236 F  236 (239)
Q Consensus       236 ~  236 (239)
                      +
T Consensus       213 ~  213 (357)
T 1zsy_A          213 K  213 (357)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=5.9e-36  Score=262.63  Aligned_cols=188  Identities=15%  Similarity=0.119  Sum_probs=159.7

Q ss_pred             CCCCCcccceeEEEEe-----cCCCCeEEEee---------cCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCe
Q 026414            1 MSTEGQVITCKAAVAW-----EPNKPLVIEDV---------QVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPC   65 (239)
Q Consensus         1 m~~~~~~~~~~a~~~~-----~~~~~~~~~~~---------~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~   65 (239)
                      ||+++.|.+|||++++     +..+.++++|+         |.|+|++|||||||++++||++|++.+.|.++. ..+|.
T Consensus         2 Ms~m~~p~~mka~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~   81 (349)
T 3pi7_A            2 MSPMTIPSEMKALLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVKGR   81 (349)
T ss_dssp             ---CCCCSEEEEEEECSCBSCSSCCCSCCCCSTTTEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSSCBCTTS
T ss_pred             CCCCCCchhheEEEEEccccCCCcccceEEEeecccccccCCCCCCCCCeEEEEEEEecCCHHHHHHhcccCCCCCCCCC
Confidence            8888899999999999     23344888888         999999999999999999999999999987643 36899


Q ss_pred             eeeeeEEEEEEEeCCCC-CCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeec
Q 026414           66 ILGHEAAGIVESVGEGV-TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFM  144 (239)
Q Consensus        66 ~~G~e~vG~Vv~vG~~v-~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~  144 (239)
                      ++|||++|+|+++|+++ ++|++||||+....                           .. .+|               
T Consensus        82 v~G~E~~G~V~~vG~~v~~~~~vGdrV~~~~g---------------------------~~-~~G---------------  118 (349)
T 3pi7_A           82 PAGFEGVGTIVAGGDEPYAKSLVGKRVAFATG---------------------------LS-NWG---------------  118 (349)
T ss_dssp             BCCSEEEEEEEEECSSHHHHHHTTCEEEEECT---------------------------TS-SCC---------------
T ss_pred             CccceEEEEEEEECCCccCCCCCCCEEEEecc---------------------------CC-CCc---------------
Confidence            99999999999999999 99999999986531                           00 233               


Q ss_pred             CCcceeeeEEEecceeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCC-CEEEEEc-CCHHHHHHHHHHHHcCCCeE
Q 026414          145 GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPG-SIVAVFG-LGTVGLAVAEGAKAAGASRV  222 (239)
Q Consensus       145 ~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g-~~vlI~G-~g~~g~~ai~~~~~~G~~~v  222 (239)
                         +|+||+++|.+.++++|+++++++||.+++...|||+ +++..+ +++ ++|||+| +|++|++++|+++++|+ +|
T Consensus       119 ---~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~-~~~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~Ga-~V  192 (349)
T 3pi7_A          119 ---SWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIA-MFDIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEGF-RP  192 (349)
T ss_dssp             ---SSBSEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHH-HHHHHH-HHCCSEEEESSTTSHHHHHHHHHHHHHTC-EE
T ss_pred             ---cceeeEeechHHeEECCCCCCHHHHhhccccHHHHHH-HHHHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EE
Confidence               9999999999999999999999999999999999996 556666 666 6888885 49999999999999999 99


Q ss_pred             EEEcCChhhHhhhhh
Q 026414          223 IGIDIDPKKFDREFW  237 (239)
Q Consensus       223 v~~~~~~~~~~~~~~  237 (239)
                      ++++++++|++++++
T Consensus       193 i~~~~~~~~~~~~~~  207 (349)
T 3pi7_A          193 IVTVRRDEQIALLKD  207 (349)
T ss_dssp             EEEESCGGGHHHHHH
T ss_pred             EEEeCCHHHHHHHHH
Confidence            999999999988864

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=5e-35  Score=257.34  Aligned_cols=183  Identities=22%  Similarity=0.207  Sum_probs=162.9

Q ss_pred             CcccceeEEEEecCCC--CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCC-CCCeeeeeeEEEEEEEeCCC
Q 026414            5 GQVITCKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVGEG   81 (239)
Q Consensus         5 ~~~~~~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~-~~p~~~G~e~vG~Vv~vG~~   81 (239)
                      ..|.+|||+++.+++.  .++++++|.|+|++|||||||++++||++|++.+.|.++.. .+|.++|||++|+|+++|++
T Consensus        18 ~~~~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E~~G~V~~vG~~   97 (354)
T 2j8z_A           18 LYFQSMLAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELGPG   97 (354)
T ss_dssp             ---CEEEEEEESSCSSGGGEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCCTTSCSSSCSEEEEEEEEECSC
T ss_pred             cchhheeEEEEccCCCccceEEeecCCCCCCCCeEEEEEEEeecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEECCC
Confidence            5678899999998885  38999999999999999999999999999999998876432 47899999999999999999


Q ss_pred             C-CCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEeccee
Q 026414           82 V-TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV  160 (239)
Q Consensus        82 v-~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  160 (239)
                      + ++|++||+|+...                               .+|                  +|+||+++|.+.+
T Consensus        98 v~~~~~vGdrV~~~~-------------------------------~~G------------------~~aey~~v~~~~~  128 (354)
T 2j8z_A           98 CQGHWKIGDTAMALL-------------------------------PGG------------------GQAQYVTVPEGLL  128 (354)
T ss_dssp             C--CCCTTCEEEEEC-------------------------------SSC------------------CSBSEEEEEGGGE
T ss_pred             cCCCCCCCCEEEEec-------------------------------CCC------------------cceeEEEeCHHHc
Confidence            9 9999999997531                               123                  9999999999999


Q ss_pred             EecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       161 ~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++|+++++++||.+++++.|||+++.+..++++|++|||+|+ |++|++++++++..|+ +|+++++++++++.+++
T Consensus       129 ~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~  205 (354)
T 2j8z_A          129 MPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEK  205 (354)
T ss_dssp             EECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             EECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence            9999999999999999999999998888899999999999986 9999999999999999 89999999999887754

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.6e-34  Score=253.65  Aligned_cols=179  Identities=23%  Similarity=0.274  Sum_probs=160.9

Q ss_pred             cceeEEEEecCCC--CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCC
Q 026414            8 ITCKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTE   84 (239)
Q Consensus         8 ~~~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~   84 (239)
                      ++|||++++++++  .+++++.|.|+|++|||||||++++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++
T Consensus         2 m~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~~   81 (349)
T 4a27_A            2 MEMRAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKG   81 (349)
T ss_dssp             CCEEEEEECSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECTTCCS
T ss_pred             ceeEEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCcCCCCCCCccccceeEEEEEEeCCCCCC
Confidence            6899999999885  3999999999999999999999999999999999988643 478999999999999999999999


Q ss_pred             CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (239)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p  164 (239)
                      |++||||+...                               .+|                  +|+||+.+|.+.++++|
T Consensus        82 ~~~GdrV~~~~-------------------------------~~G------------------~~aey~~v~~~~~~~iP  112 (349)
T 4a27_A           82 YEIGDRVMAFV-------------------------------NYN------------------AWAEVVCTPVEFVYKIP  112 (349)
T ss_dssp             CCTTCEEEEEC-------------------------------SSC------------------CSBSEEEEEGGGEEECC
T ss_pred             CCCCCEEEEec-------------------------------CCC------------------cceEEEEecHHHeEECC
Confidence            99999997542                               223                  99999999999999999


Q ss_pred             CCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      +++++++|+.+++++.|||+++.+..++++|++|||+|+ |++|++++|+++.+|..+|++++ +++|++.++
T Consensus       113 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~  184 (349)
T 4a27_A          113 DDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK  184 (349)
T ss_dssp             TTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH
Confidence            999999999999999999998888899999999999998 99999999999999755888887 556666554

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=1.5e-34  Score=254.81  Aligned_cols=176  Identities=21%  Similarity=0.220  Sum_probs=156.1

Q ss_pred             ccceeEEEEecCCCC---eEEEeecCCCCC--CCeEEEEEeEeeechhhhhhhcCCCCC-CCCC---------eeeeeeE
Q 026414            7 VITCKAAVAWEPNKP---LVIEDVQVAPPQ--AGEVRIKILFTALCHTDAYTWSGKDPE-GLFP---------CILGHEA   71 (239)
Q Consensus         7 ~~~~~a~~~~~~~~~---~~~~~~~~p~~~--~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p---------~~~G~e~   71 (239)
                      |++||++++++++++   ++++|+|.|+|+  +|||||||++++||++|++.+.|.++. ..+|         .++|||+
T Consensus         1 ~~~mka~~~~~~g~~~~~l~~~~~~~P~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~~~~~~~p~~i~G~E~   80 (364)
T 1gu7_A            1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEG   80 (364)
T ss_dssp             CEEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCC
T ss_pred             CceEEEEEeccCCCchheeEEeeccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCCCCCCccccccCcccccCcee
Confidence            468999999999875   899999999887  999999999999999999999987543 2467         8999999


Q ss_pred             EEEEEEeCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceee
Q 026414           72 AGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQ  151 (239)
Q Consensus        72 vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~  151 (239)
                      +|+|+++|+++++|++||+|+..+.                              .+                  |+|+|
T Consensus        81 ~G~V~~vG~~v~~~~vGdrV~~~~~------------------------------~~------------------G~~ae  112 (364)
T 1gu7_A           81 LFEVIKVGSNVSSLEAGDWVIPSHV------------------------------NF------------------GTWRT  112 (364)
T ss_dssp             EEEEEEECTTCCSCCTTCEEEESSS------------------------------CC------------------CCSBS
T ss_pred             EEEEEEeCCCCCcCCCCCEEEecCC------------------------------CC------------------Ccchh
Confidence            9999999999999999999985421                              12                  39999


Q ss_pred             eEEEecceeEecCC-----------CCCchhhhhcccccchhhhhhhhhcCCCCC-CEEEEEcC-CHHHHHHHHHHHHcC
Q 026414          152 YTVVHDVSVAKIDP-----------QAPLDKVCLLGCGVPTGLGAVWNTAKVEPG-SIVAVFGL-GTVGLAVAEGAKAAG  218 (239)
Q Consensus       152 ~~~~~~~~~~~~p~-----------~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g-~~vlI~G~-g~~g~~ai~~~~~~G  218 (239)
                      |+++|.+.++++|+           ++++++||.+++++.|||+++....++++| ++|||+|+ |++|++++|+|+++|
T Consensus       113 y~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~G  192 (364)
T 1gu7_A          113 HALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLN  192 (364)
T ss_dssp             EEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHT
T ss_pred             eEecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCC
Confidence            99999999999998           899999999999999999988776789999 99999998 999999999999999


Q ss_pred             CCeEEEEcCChhh
Q 026414          219 ASRVIGIDIDPKK  231 (239)
Q Consensus       219 ~~~vv~~~~~~~~  231 (239)
                      + +++++++++++
T Consensus       193 a-~vi~~~~~~~~  204 (364)
T 1gu7_A          193 F-NSISVIRDRPN  204 (364)
T ss_dssp             C-EEEEEECCCTT
T ss_pred             C-EEEEEecCccc
Confidence            9 78888765544

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.6e-34  Score=251.17  Aligned_cols=180  Identities=24%  Similarity=0.277  Sum_probs=161.3

Q ss_pred             ceeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414            9 TCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (239)
Q Consensus         9 ~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~   86 (239)
                      +|||+++++++.+  +++++.|.|+|++|||||||.+++||++|++.+.|.++...+|.++|||++|+|+++|+++++|+
T Consensus         1 ~Mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   80 (327)
T 1qor_A            1 MATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIK   80 (327)
T ss_dssp             -CEEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCC
T ss_pred             CcEEEEEcCCCChhheEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCCCceeEEEEEEECCCCCCCC
Confidence            3899999987753  89999999999999999999999999999999998765446899999999999999999999999


Q ss_pred             CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (239)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~  166 (239)
                      +||||.....                              .+|                  +|+||+++|.+.++++|++
T Consensus        81 ~GdrV~~~g~------------------------------~~G------------------~~aey~~v~~~~~~~iP~~  112 (327)
T 1qor_A           81 AGDRVVYAQS------------------------------ALG------------------AYSSVHNIIADKAAILPAA  112 (327)
T ss_dssp             TTCEEEESCC------------------------------SSC------------------CSBSEEEEEGGGEEECCTT
T ss_pred             CCCEEEECCC------------------------------CCc------------------eeeeEEEecHHHcEECCCC
Confidence            9999942100                              123                  9999999999999999999


Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++++|+.+++++.|||+++....++++|++|||+|+ |++|++++++++..|+ +|+++++++++++.+++
T Consensus       113 l~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~  183 (327)
T 1qor_A          113 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALK  183 (327)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence            9999999999999999998877889999999999986 9999999999999999 99999999998887754

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=2.1e-34  Score=251.20  Aligned_cols=179  Identities=30%  Similarity=0.381  Sum_probs=157.8

Q ss_pred             eeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCC--CC-CCCCeeeeeeEEEEEEEeCCCCCC
Q 026414           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD--PE-GLFPCILGHEAAGIVESVGEGVTE   84 (239)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~--~~-~~~p~~~G~e~vG~Vv~vG~~v~~   84 (239)
                      |||+++++++.+  +++++.|.|+|++|||||||++++||++|++.+.|.+  .. ..+|.++|||++|+|+++|+++++
T Consensus         2 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~   81 (333)
T 1wly_A            2 VMAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTD   81 (333)
T ss_dssp             CEEEEESSCSSGGGEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTCCS
T ss_pred             cEEEEEcccCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCCCC
Confidence            899999987753  9999999999999999999999999999999998865  21 357999999999999999999999


Q ss_pred             CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (239)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p  164 (239)
                      |++||||...+.                              .+|                  +|+||+++|.+.++++|
T Consensus        82 ~~~GdrV~~~~~------------------------------~~G------------------~~aey~~v~~~~~~~iP  113 (333)
T 1wly_A           82 FTVGERVCTCLP------------------------------PLG------------------AYSQERLYPAEKLIKVP  113 (333)
T ss_dssp             CCTTCEEEECSS------------------------------SCC------------------CSBSEEEEEGGGCEECC
T ss_pred             CCCCCEEEEecC------------------------------CCC------------------cceeEEEecHHHcEeCC
Confidence            999999975321                              123                  99999999999999999


Q ss_pred             CCCCchh--hhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          165 PQAPLDK--VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       165 ~~~~~~~--aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++++++  |+.+++++.|||+++....++++|++|||+|+ |++|++++++++..|+ +|+++++++++++.+++
T Consensus       114 ~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~  188 (333)
T 1wly_A          114 KDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARK  188 (333)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             CCCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            9999999  89999999999998877889999999999997 9999999999999999 99999999988887754

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=100.00  E-value=7.9e-34  Score=251.43  Aligned_cols=185  Identities=22%  Similarity=0.204  Sum_probs=160.6

Q ss_pred             CcccceeEEEEecCCCC--eEE-EeecCCCC-CCCeEEEEEeEeeechhhhhhhcCCCC-------------C--CCCCe
Q 026414            5 GQVITCKAAVAWEPNKP--LVI-EDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDP-------------E--GLFPC   65 (239)
Q Consensus         5 ~~~~~~~a~~~~~~~~~--~~~-~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~-------------~--~~~p~   65 (239)
                      ..+.+|||+++.+++.+  +++ +++|.|.| ++|||||||++++||++|++.+.|..+             .  ..+|.
T Consensus        17 ~~~~~mka~~~~~~g~~~~l~~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~~~~~~~~P~   96 (375)
T 2vn8_A           17 NLYFQSMAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPL   96 (375)
T ss_dssp             -CCCCEEEEEBSSCCSGGGCEEEEEECCCCCCSTTEEEEEEEEEEECHHHHHHHTTTTHHHHHHHHCTTCCSCTTTTCSB
T ss_pred             ccCccceeEEeccCCCccceEEeccccCCCCCCCCEEEEEEEEEEcCHHHHHHhccCccccccccccccccccccccCCc
Confidence            45678999999988753  888 99999985 999999999999999999999887531             1  23789


Q ss_pred             eeeeeEEEEEEEeCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecC
Q 026414           66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMG  145 (239)
Q Consensus        66 ~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  145 (239)
                      ++|||++|+|+++|+++++|++||+|+..+..                            ..+|                
T Consensus        97 v~G~E~~G~V~~vG~~V~~~~vGDrV~~~~~~----------------------------~~~G----------------  132 (375)
T 2vn8_A           97 TLGRDVSGVVMECGLDVKYFKPGDEVWAAVPP----------------------------WKQG----------------  132 (375)
T ss_dssp             CCCCEEEEEEEEECTTCCSCCTTCEEEEECCT----------------------------TSCC----------------
T ss_pred             ccceeeeEEEEEeCCCCCCCCCCCEEEEecCC----------------------------CCCc----------------
Confidence            99999999999999999999999999865320                            0223                


Q ss_pred             CcceeeeEEEecceeEecCCCCCchhhhhcccccchhhhhhhhhcC----CCCCCEEEEEcC-CHHHHHHHHHHHHcCCC
Q 026414          146 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK----VEPGSIVAVFGL-GTVGLAVAEGAKAAGAS  220 (239)
Q Consensus       146 ~g~~~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~----~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~  220 (239)
                        +|+||+++|.+.++++|+++++++||.+++++.|||+++.+..+    +++|++|||+|+ |++|++++|+++.+|+ 
T Consensus       133 --~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga-  209 (375)
T 2vn8_A          133 --TLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDA-  209 (375)
T ss_dssp             --SSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTC-
T ss_pred             --cceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCC-
Confidence              99999999999999999999999999999899999998877788    999999999995 9999999999999999 


Q ss_pred             eEEEEcCChhhHhhhhh
Q 026414          221 RVIGIDIDPKKFDREFW  237 (239)
Q Consensus       221 ~vv~~~~~~~~~~~~~~  237 (239)
                      +|++++ +++|++++++
T Consensus       210 ~Vi~~~-~~~~~~~~~~  225 (375)
T 2vn8_A          210 HVTAVC-SQDASELVRK  225 (375)
T ss_dssp             EEEEEE-CGGGHHHHHH
T ss_pred             EEEEEe-ChHHHHHHHH
Confidence            888888 5677777754

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=3.8e-34  Score=248.40  Aligned_cols=182  Identities=18%  Similarity=0.195  Sum_probs=158.7

Q ss_pred             eeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (239)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~   86 (239)
                      |||+++++++++  ++++++|.|+|++|||||||++++||++|++.+.|.++. ..+|.++|||++|+|+++|  +++|+
T Consensus         1 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~G--v~~~~   78 (324)
T 3nx4_A            1 MQALILEQQDGKTLASVQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIRHFPMIPGIDFAGTVHASE--DPRFH   78 (324)
T ss_dssp             CEEEEEEESSSSEEEEEEECCGGGSCCCSEEEEEEEEEECHHHHHHHHTCTTCCCSSSBCCCSEEEEEEEEES--STTCC
T ss_pred             CceEEEecCCCCceeeEeecCCCCCCCCEEEEEEEEEeCCHHHHhhhcCCCCCCCCCCccccceeEEEEEEeC--CCCCC
Confidence            899999999986  899999999999999999999999999999999987654 4789999999999999998  57899


Q ss_pred             CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (239)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~  166 (239)
                      +||||++.+.   .                     .|.. .+|                  +|+||+.+|.+.++++|++
T Consensus        79 vGdrV~~~~~---~---------------------~g~~-~~G------------------~~aey~~v~~~~~~~iP~~  115 (324)
T 3nx4_A           79 AGQEVLLTGW---G---------------------VGEN-HWG------------------GLAERARVKGDWLVALPAG  115 (324)
T ss_dssp             TTCEEEEECT---T---------------------BTTT-BCC------------------SSBSEEEECGGGCEECCTT
T ss_pred             CCCEEEEccc---c---------------------cCCC-CCC------------------ceeeEEecCHHHcEECCCC
Confidence            9999987531   0                     1111 233                  9999999999999999999


Q ss_pred             CCchhhhhcccccchhhhhhh--hhcCCCCCC-EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVW--NTAKVEPGS-IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~--~~~~~~~g~-~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++++||.+++++.|||.++.  .+.++++++ +|||+|+ |++|++++|+|+++|+ +|++++++++|++++++
T Consensus       116 ~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~  189 (324)
T 3nx4_A          116 LSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKS  189 (324)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHH
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh
Confidence            999999999999999998774  445566633 4999998 9999999999999999 99999999999998865

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=100.00  E-value=2.7e-33  Score=247.00  Aligned_cols=179  Identities=19%  Similarity=0.158  Sum_probs=159.9

Q ss_pred             cccceeEEEEecCCC----CeEE-EeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeC
Q 026414            6 QVITCKAAVAWEPNK----PLVI-EDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVG   79 (239)
Q Consensus         6 ~~~~~~a~~~~~~~~----~~~~-~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG   79 (239)
                      .+.+|||+++++++.    .+++ +++|.|+|++|||||||++++||++|++.+.|.++. ..+|.++|||++|+|+++|
T Consensus        20 ~~~~MkA~~~~~~g~~~~~~l~~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~i~G~E~~G~V~~vG   99 (362)
T 2c0c_A           20 FQSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALG   99 (362)
T ss_dssp             HCCEEEEEEECSCCSSHHHHEEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHTTTTCTTCCSCEECCSEEEEEEEEEC
T ss_pred             chhhceEEEEeecCCCccceeEEEeecCCCCCCCCeEEEEEEEeccCHHHHHHhcCCCCCCCCCCCCCCceeEEEEEEEC
Confidence            457899999999874    3889 999999999999999999999999999999987643 3689999999999999999


Q ss_pred             CCCC-CCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecc
Q 026414           80 EGVT-EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV  158 (239)
Q Consensus        80 ~~v~-~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  158 (239)
                      ++++ +|++||||+..                                .+|                  +|+||+++|.+
T Consensus       100 ~~V~~~~~vGdrV~~~--------------------------------~~G------------------~~aey~~v~~~  129 (362)
T 2c0c_A          100 LSASARYTVGQAVAYM--------------------------------APG------------------SFAEYTVVPAS  129 (362)
T ss_dssp             TTGGGTCCTTCEEEEE--------------------------------CSC------------------CSBSEEEEEGG
T ss_pred             CCccCCCCCCCEEEEc--------------------------------cCC------------------cceeEEEEcHH
Confidence            9999 99999999753                                123                  99999999999


Q ss_pred             eeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          159 SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       159 ~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      .++++|+. + .++++++.++.|||+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|++++++++|++++++
T Consensus       130 ~~~~~P~~-~-~~aaal~~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~  206 (362)
T 2c0c_A          130 IATPVPSV-K-PEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKS  206 (362)
T ss_dssp             GCEECSSS-C-HHHHTTTTHHHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             HeEECCCC-c-hHhhcccchHHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH
Confidence            99999986 3 4677788899999998888889999999999995 9999999999999999 89999999999888764

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=100.00  E-value=4.3e-33  Score=242.47  Aligned_cols=184  Identities=21%  Similarity=0.210  Sum_probs=158.2

Q ss_pred             cceeEEEEecCCC--CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCC
Q 026414            8 ITCKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTE   84 (239)
Q Consensus         8 ~~~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~   84 (239)
                      .+|||+++++++.  .++++|+|.|+|++|||||||++++||++|++.+.|.++. ..+|.++|||++|+|+++|  +++
T Consensus         3 ~~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~~~--v~~   80 (330)
T 1tt7_A            3 TLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSSN--DPR   80 (330)
T ss_dssp             CEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEECS--STT
T ss_pred             CcceEEEEecCCCCcceeEeecCCCCCCCCEEEEEEEEEecCHHHHhhhcCCCCCcCCCCccccceEEEEEEEcC--CCC
Confidence            5799999998772  4899999999999999999999999999999999886543 3579999999999999964  678


Q ss_pred             CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (239)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p  164 (239)
                      |++||||++.+..                        .|.. .+                  |+|+||+++|.+.++++|
T Consensus        81 ~~vGdrV~~~~~~------------------------~g~~-~~------------------G~~aey~~v~~~~~~~iP  117 (330)
T 1tt7_A           81 FAEGDEVIATSYE------------------------LGVS-RD------------------GGLSEYASVPGDWLVPLP  117 (330)
T ss_dssp             CCTTCEEEEESTT------------------------BTTT-BC------------------CSSBSSEEECGGGEEECC
T ss_pred             CCCCCEEEEcccc------------------------cCCC-CC------------------ccceeEEEecHHHeEECC
Confidence            9999999865320                        1111 22                  399999999999999999


Q ss_pred             CCCCchhhhhcccccchhhhhhh--hhcCCCCCC-EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          165 PQAPLDKVCLLGCGVPTGLGAVW--NTAKVEPGS-IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~--~~~~~~~g~-~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++++++|+.+++++.|+|.++.  .+.++++|+ +|||+|+ |++|++++|+++.+|+ +|++++++++|++++++
T Consensus       118 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~  193 (330)
T 1tt7_A          118 QNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQ  193 (330)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHH
T ss_pred             CCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            99999999999988999997664  456788996 9999998 9999999999999999 79999999999888764

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=5.7e-33  Score=241.52  Aligned_cols=184  Identities=18%  Similarity=0.203  Sum_probs=157.6

Q ss_pred             cceeEEEEecCCC--CeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCC
Q 026414            8 ITCKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTE   84 (239)
Q Consensus         8 ~~~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~   84 (239)
                      .+||++++++++.  .++++|+|.|+|++|||||||++++||++|++.+.|.++. ..+|.++|||++|+|+++  ++++
T Consensus         2 ~~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~--~v~~   79 (328)
T 1xa0_A            2 SAFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVSS--QHPR   79 (328)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEEC--CSSS
T ss_pred             CcceEEEEecCCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHhhcCCCCCCCCCCcccCcceEEEEEec--CCCC
Confidence            3799999999873  3889999999999999999999999999999998876432 357899999999999995  4688


Q ss_pred             CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (239)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p  164 (239)
                      |++||||.+....                        .|.. .+                  |+|+||+++|.+.++++|
T Consensus        80 ~~vGdrV~~~~~~------------------------~g~~-~~------------------G~~aey~~v~~~~~~~~P  116 (328)
T 1xa0_A           80 FREGDEVIATGYE------------------------IGVT-HF------------------GGYSEYARLHGEWLVPLP  116 (328)
T ss_dssp             CCTTCEEEEESTT------------------------BTTT-BC------------------CSSBSEEEECGGGCEECC
T ss_pred             CCCCCEEEEcccc------------------------CCCC-CC------------------ccceeEEEechHHeEECC
Confidence            9999999865320                        1111 22                  399999999999999999


Q ss_pred             CCCCchhhhhcccccchhhhhhh--hhcCCCCCC-EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          165 PQAPLDKVCLLGCGVPTGLGAVW--NTAKVEPGS-IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~--~~~~~~~g~-~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++++++|+.+++++.|+|.++.  .+.++++|+ +|||+|+ |++|++++|+++.+|+ +|++++++++|++++++
T Consensus       117 ~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~  192 (328)
T 1xa0_A          117 KGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRV  192 (328)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHH
T ss_pred             CCCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
Confidence            99999999999988899998764  456788996 9999998 9999999999999999 79999999999888764

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=100.00  E-value=3.4e-33  Score=247.84  Aligned_cols=179  Identities=18%  Similarity=0.168  Sum_probs=157.8

Q ss_pred             cccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCC--------------------------
Q 026414            6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP--------------------------   59 (239)
Q Consensus         6 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~--------------------------   59 (239)
                      .+.+||+++.......++++|+|.|+|++|||||||++++||++|++.+.|.++                          
T Consensus         4 ~~~~mka~v~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~~~~~~   83 (379)
T 3iup_A            4 SALQLRSRIKSSGELELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMRS   83 (379)
T ss_dssp             EEEEEEEEECTTSEEEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCHHHHHH
T ss_pred             chhhHHHHHhcCCCCceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhcCCccccccccccccccccccccCccccccc
Confidence            457899999865544599999999999999999999999999999999987521                          


Q ss_pred             ---CCCCCeeeeeeEEEEEEEeCCCC-CCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCcccccc
Q 026414           60 ---EGLFPCILGHEAAGIVESVGEGV-TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSI  135 (239)
Q Consensus        60 ---~~~~p~~~G~e~vG~Vv~vG~~v-~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~  135 (239)
                         ...+|.++|||++|+|+++|+++ ++|++||||+..+                                +|      
T Consensus        84 ~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~~--------------------------------~G------  125 (379)
T 3iup_A           84 MAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIG--------------------------------GA------  125 (379)
T ss_dssp             HGGGTTEEEECCSCEEEEEEEECSSHHHHTTTTCEEEECC--------------------------------SC------
T ss_pred             cccccCCCccceeeeEEEEEEeCCCcccCCCCCCEEEecC--------------------------------CC------
Confidence               12578999999999999999999 8899999998542                                23      


Q ss_pred             CCcceeeecCCcceeeeEEEecceeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEE--cCCHHHHHHHHH
Q 026414          136 NGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF--GLGTVGLAVAEG  213 (239)
Q Consensus       136 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~--G~g~~g~~ai~~  213 (239)
                                  +|+||+++|.+.++++|+++++++|+.+++...|||+++ +... ++|++|||+  |+|++|++++|+
T Consensus       126 ------------~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~-~~~~-~~g~~vlV~gag~G~vG~~a~q~  191 (379)
T 3iup_A          126 ------------MYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMV-ETMR-LEGHSALVHTAAASNLGQMLNQI  191 (379)
T ss_dssp             ------------CSBSEEEEEGGGEEECCTTCCHHHHTTSSHHHHHHHHHH-HHHH-HTTCSCEEESSTTSHHHHHHHHH
T ss_pred             ------------cceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHH-HHhc-cCCCEEEEECCCCCHHHHHHHHH
Confidence                        999999999999999999999999999999999999755 5555 899999999  459999999999


Q ss_pred             HHHcCCCeEEEEcCChhhHhhhhh
Q 026414          214 AKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       214 ~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      |+++|+ +|++++++++|++++++
T Consensus       192 a~~~Ga-~Vi~~~~~~~~~~~~~~  214 (379)
T 3iup_A          192 CLKDGI-KLVNIVRKQEQADLLKA  214 (379)
T ss_dssp             HHHHTC-CEEEEESSHHHHHHHHH
T ss_pred             HHHCCC-EEEEEECCHHHHHHHHh
Confidence            999999 89999999999998865

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=99.98  E-value=1.2e-31  Score=233.97  Aligned_cols=172  Identities=19%  Similarity=0.184  Sum_probs=151.7

Q ss_pred             cceeEEEEec------CCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeee----EEEEEEE
Q 026414            8 ITCKAAVAWE------PNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE----AAGIVES   77 (239)
Q Consensus         8 ~~~~a~~~~~------~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e----~vG~Vv~   77 (239)
                      ++||+++++.      ..+.++++|+|.|+|++|||||||++++||++|+..+.+.... .+|.++|||    ++|+|++
T Consensus         6 ~~mka~v~~~~~~g~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~d~~~~~~~~~~-~~p~~~G~e~g~~~~G~V~~   84 (336)
T 4b7c_A            6 QINRQYQLAQRPSGLPGRDTFSFVETPLGEPAEGQILVKNEYLSLDPAMRGWMNDARSY-IPPVGIGEVMRALGVGKVLV   84 (336)
T ss_dssp             CEEEEEEECSCCSSSCCTTSEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHHSCSCCS-SCCCCTTSBCCCEEEEEEEE
T ss_pred             ccccEEEEEecCCCCCCCCceEEEeccCCCCCCCEEEEEEEEEEeCHHHHhhhhccccc-CCCCCCCcccCCceEEEEEe
Confidence            6799999985      1234999999999999999999999999999999888764322 456777777    8999999


Q ss_pred             eCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEec
Q 026414           78 VGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD  157 (239)
Q Consensus        78 vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  157 (239)
                      .  ++++|++||||+..                                  |                  +|+||+++|.
T Consensus        85 ~--~v~~~~vGdrV~~~----------------------------------G------------------~~aey~~v~~  110 (336)
T 4b7c_A           85 S--KHPGFQAGDYVNGA----------------------------------L------------------GVQDYFIGEP  110 (336)
T ss_dssp             E--CSTTCCTTCEEEEE----------------------------------C------------------CSBSEEEECC
T ss_pred             c--CCCCCCCCCEEecc----------------------------------C------------------CceEEEEech
Confidence            4  58899999999731                                  2                  8999999999


Q ss_pred             ceeEecCCCCCchhh--hhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhh
Q 026414          158 VSVAKIDPQAPLDKV--CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (239)
Q Consensus       158 ~~~~~~p~~~~~~~a--a~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~  234 (239)
                      +.++++|+++++.++  +.+++++.|||+++.+..++++|++|||+|+ |++|++++|+++..|+ +|++++++++|++.
T Consensus       111 ~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~  189 (336)
T 4b7c_A          111 KGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRF  189 (336)
T ss_dssp             TTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHH
T ss_pred             HHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            999999999977776  7788899999999888999999999999998 9999999999999999 99999999999988


Q ss_pred             h
Q 026414          235 E  235 (239)
Q Consensus       235 ~  235 (239)
                      +
T Consensus       190 ~  190 (336)
T 4b7c_A          190 L  190 (336)
T ss_dssp             H
T ss_pred             H
Confidence            7

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=99.98  E-value=2e-31  Score=234.41  Aligned_cols=180  Identities=19%  Similarity=0.233  Sum_probs=154.9

Q ss_pred             CCcccceeEEEE-ecC---C----CCeEEEeecCCCC-CCCeEEEEEeEeeechhhhhhhcC----CCC-CCCCCeeeee
Q 026414            4 EGQVITCKAAVA-WEP---N----KPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSG----KDP-EGLFPCILGH   69 (239)
Q Consensus         4 ~~~~~~~~a~~~-~~~---~----~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g----~~~-~~~~p~~~G~   69 (239)
                      ...|++||++++ ..+   +    +.++++++|.|+| ++|||||||++++||++|++.+.+    .+. ...+|.++||
T Consensus         3 ~~~~~~mka~v~~~~~~~~g~p~~~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~~~~g~~~~~~~~~p~v~G~   82 (357)
T 2zb4_A            3 AAAAMIVQRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDG   82 (357)
T ss_dssp             ---CCEEEEEEECCCCCTTSCCCGGGEEEEEEECCSCCCTTEEEEEEEEEECCTTHHHHTSSSCSSSSSCCCCBTSBCEE
T ss_pred             CcccccceEEEEeccCCCCCCCCcCceEEEeecCCCCCCCCeEEEEEEEEecCHHHHhhccccccccccCCCCCCccccc
Confidence            467889999999 555   3    2399999999999 999999999999999999987765    232 2357889999


Q ss_pred             eEEEEEEEeCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcce
Q 026414           70 EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTF  149 (239)
Q Consensus        70 e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~  149 (239)
                      |++|+|++  +++++|++||||+..                                 +                  |+|
T Consensus        83 E~~G~V~~--~~v~~~~vGdrV~~~---------------------------------~------------------G~~  109 (357)
T 2zb4_A           83 GGIGIIEE--SKHTNLTKGDFVTSF---------------------------------Y------------------WPW  109 (357)
T ss_dssp             EEEEEEEE--ECSTTCCTTCEEEEE---------------------------------E------------------EES
T ss_pred             cEEEEEEe--cCCCCCCCCCEEEec---------------------------------C------------------CCc
Confidence            99999999  889999999999743                                 1                  289


Q ss_pred             eeeEEEecceeEecCCCC-----CchhhhhcccccchhhhhhhhhcCCCCC--CEEEEEcC-CHHHHHHHHHHHHcCCCe
Q 026414          150 SQYTVVHDVSVAKIDPQA-----PLDKVCLLGCGVPTGLGAVWNTAKVEPG--SIVAVFGL-GTVGLAVAEGAKAAGASR  221 (239)
Q Consensus       150 ~~~~~~~~~~~~~~p~~~-----~~~~aa~l~~~~~ta~~~~~~~~~~~~g--~~vlI~G~-g~~g~~ai~~~~~~G~~~  221 (239)
                      +||+++|.+.++++|+++     +++ ++.++.++.|||+++.+..++++|  ++|||+|+ |++|++++|+++..|+++
T Consensus       110 aey~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~  188 (357)
T 2zb4_A          110 QTKVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSR  188 (357)
T ss_dssp             BSEEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSE
T ss_pred             EEEEEEchHHceecCcccccCchhHH-HHhcccHHHHHHHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCe
Confidence            999999999999999998     555 677888999999988888999999  99999998 999999999999999878


Q ss_pred             EEEEcCChhhHhhhhh
Q 026414          222 VIGIDIDPKKFDREFW  237 (239)
Q Consensus       222 vv~~~~~~~~~~~~~~  237 (239)
                      |+++++++++++.+++
T Consensus       189 Vi~~~~~~~~~~~~~~  204 (357)
T 2zb4_A          189 VVGICGTHEKCILLTS  204 (357)
T ss_dssp             EEEEESCHHHHHHHHH
T ss_pred             EEEEeCCHHHHHHHHH
Confidence            9999999988887754

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=99.97  E-value=5.3e-31  Score=226.68  Aligned_cols=166  Identities=22%  Similarity=0.245  Sum_probs=149.9

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQPG   88 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~~~~G   88 (239)
                      |||+++++++++..++|.|.|+|++|||||||++++||++|++.+.|.++. ..+|.++|||++|+|+           |
T Consensus         1 Mka~~~~~~g~~~~l~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~-----------G   69 (302)
T 1iz0_A            1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVVE-----------G   69 (302)
T ss_dssp             CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEET-----------T
T ss_pred             CeEEEEcCCCCchheEECCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcccceEEEEEE-----------C
Confidence            799999999886667799999999999999999999999999999987543 3679999999999998           9


Q ss_pred             CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCC
Q 026414           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (239)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~  168 (239)
                      |||...+                               .+|                  +|+||+++|.+.++++|++++
T Consensus        70 drV~~~~-------------------------------~~G------------------~~aey~~v~~~~~~~iP~~~~  100 (302)
T 1iz0_A           70 RRYAALV-------------------------------PQG------------------GLAERVAVPKGALLPLPEGLS  100 (302)
T ss_dssp             EEEEEEC-------------------------------SSC------------------CSBSEEEEEGGGCEECCTTCC
T ss_pred             cEEEEec-------------------------------CCc------------------ceeeEEEEcHHHcEeCCCCCC
Confidence            9998542                               123                  999999999999999999999


Q ss_pred             chhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++||.+++++.|||+++.... +++|++|||+|+ |++|++++|+++.+|+ +|++++++++|++++++
T Consensus       101 ~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~  168 (302)
T 1iz0_A          101 PEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA  168 (302)
T ss_dssp             HHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh
Confidence            9999999999999999887677 999999999998 9999999999999999 99999999999888754

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=99.96  E-value=1.6e-28  Score=213.79  Aligned_cols=173  Identities=18%  Similarity=0.176  Sum_probs=147.7

Q ss_pred             cccceeEEEEecC--C----CCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeC
Q 026414            6 QVITCKAAVAWEP--N----KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVG   79 (239)
Q Consensus         6 ~~~~~~a~~~~~~--~----~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG   79 (239)
                      .+++||++++.+.  +    +.++++|+|.|+|++|||||||++++||+.|... ..   ...+|.++|||++|+|++. 
T Consensus         4 ~~~~mka~~~~~~~~g~~~~~~l~~~e~~~P~~~~~eVlVkv~a~gi~~~~~~~-~~---~~~~p~~~g~e~~G~Vv~~-   78 (333)
T 1v3u_A            4 FMVKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIA-SK---RLKEGAVMMGQQVARVVES-   78 (333)
T ss_dssp             CCCEEEEEEECC-----CCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHH-TT---TCCTTSBCCCCEEEEEEEE-
T ss_pred             ccccccEEEEeecCCCCCCccceEEEeCCCCCCCCCEEEEEEEEeccCHHHccc-cC---cCCCCcccccceEEEEEec-
Confidence            4678999999874  3    3499999999999999999999999999988732 11   2256789999999999995 


Q ss_pred             CCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecce
Q 026414           80 EGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS  159 (239)
Q Consensus        80 ~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  159 (239)
                       ++++|++||||+..                                  |                  +|+||+++|.+.
T Consensus        79 -~v~~~~vGdrV~~~----------------------------------g------------------~~aey~~v~~~~  105 (333)
T 1v3u_A           79 -KNSAFPAGSIVLAQ----------------------------------S------------------GWTTHFISDGKG  105 (333)
T ss_dssp             -SCTTSCTTCEEEEC----------------------------------C------------------CSBSEEEESSTT
T ss_pred             -CCCCCCCCCEEEec----------------------------------C------------------ceEEEEEechHH
Confidence             57889999999731                                  2                  899999999999


Q ss_pred             eEecCCC----CCchh-hhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414          160 VAKIDPQ----APLDK-VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (239)
Q Consensus       160 ~~~~p~~----~~~~~-aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~  233 (239)
                      ++++|++    +++++ ++.++++++|||+++.+..++++|++|||+|+ |++|++++++++..|+ +|+++++++++++
T Consensus       106 ~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~  184 (333)
T 1v3u_A          106 LEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIA  184 (333)
T ss_dssp             EEECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHH
T ss_pred             eEEcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            9999997    88887 47888899999998878889999999999998 9999999999999999 9999999999888


Q ss_pred             hhhh
Q 026414          234 REFW  237 (239)
Q Consensus       234 ~~~~  237 (239)
                      .+++
T Consensus       185 ~~~~  188 (333)
T 1v3u_A          185 YLKQ  188 (333)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7743

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.96  E-value=1.2e-28  Score=236.58  Aligned_cols=169  Identities=28%  Similarity=0.352  Sum_probs=148.4

Q ss_pred             eEEEEecCCC--CeEEEeecC--CCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414           11 KAAVAWEPNK--PLVIEDVQV--APPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (239)
Q Consensus        11 ~a~~~~~~~~--~~~~~~~~~--p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~   86 (239)
                      ..+.+..+|.  .+++++.|.  |+|++|||+|||+++|||++|+++..|.++   .|.++|||++|+|+++|++|++|+
T Consensus       211 ~~l~~~~~G~~~~L~~~~~~~p~~~~~~~eVlV~V~a~gin~~D~~~~~G~~~---~~~~lG~E~aG~V~~vG~~V~~~~  287 (795)
T 3slk_A          211 WRLEATRPGSLDGLALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYP---GVASLGSEGAGVVVETGPGVTGLA  287 (795)
T ss_dssp             CCEEESSTTSSTTEEECCCHHHHSCCCSSEEEEEEEEEEECHHHHHHTTTCCS---SCCCSCCCEEEEEEEECSSCCSSC
T ss_pred             EEEecCCCCCccceEEEeCCccCCCCCCCEEEEEEEEEccCHHHHHHHcCCCC---CCccccceeEEEEEEeCCCCCcCC
Confidence            4455655554  388888775  568999999999999999999999998764   345799999999999999999999


Q ss_pred             CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (239)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~  166 (239)
                      +||||...                                .+|                  +|++|++++...++++|++
T Consensus       288 vGDrV~~~--------------------------------~~G------------------~~ae~~~v~~~~~~~iP~~  317 (795)
T 3slk_A          288 PGDRVMGM--------------------------------IPK------------------AFGPLAVADHRMVTRIPAG  317 (795)
T ss_dssp             TTCEEEEC--------------------------------CSS------------------CSSSEEEEETTSEEECCTT
T ss_pred             CCCEEEEE--------------------------------ecC------------------CCcCEEEeehHHEEECCCC
Confidence            99999743                                223                  8999999999999999999


Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~  234 (239)
                      +++++|+.+++++.|+|+++.+..++++|++|||+|+ |++|++++|++|.+|+ +|+++++++ |.+.
T Consensus       318 ls~~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga-~V~~t~~~~-k~~~  384 (795)
T 3slk_A          318 WSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGA-EVYATASED-KWQA  384 (795)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTBHHHHHHHHHHHHTTC-CEEEECCGG-GGGG
T ss_pred             CCHHHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeChH-Hhhh
Confidence            9999999999999999999989999999999999987 9999999999999999 899998776 4443

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=99.95  E-value=2.9e-28  Score=213.08  Aligned_cols=172  Identities=22%  Similarity=0.204  Sum_probs=141.6

Q ss_pred             eeEEEEecCCC-CeEEE--eecCCC-CCCCeEEEEEeEeeechhhhhhhcCCCCC----CCCCeeeeeeEEEEEEE--eC
Q 026414           10 CKAAVAWEPNK-PLVIE--DVQVAP-PQAGEVRIKILFTALCHTDAYTWSGKDPE----GLFPCILGHEAAGIVES--VG   79 (239)
Q Consensus        10 ~~a~~~~~~~~-~~~~~--~~~~p~-~~~~eVlVkv~~~~i~~~D~~~~~g~~~~----~~~p~~~G~e~vG~Vv~--vG   79 (239)
                      ||++++.++++ .++++  ++|.|. |++|||||||+++++|+.|. .+.|....    ..+|.++|||++|++++  +|
T Consensus        10 m~a~~~~~p~~~~l~~~~~~~~~P~~~~~~eVlVkv~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G~e~~G~~~~GvV~   88 (345)
T 2j3h_A           10 LKDYVSGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMR-IRMGKPDPSTAALAQAYTPGQPIQGYGVSRIIE   88 (345)
T ss_dssp             ECSCBSSSCCGGGEEEEEEEEECCSCSSSSCEEEEECEEECCTTHH-HHHBC---------CCCCTTSBCEEEEEEEEEE
T ss_pred             EecCCCCCCCccceeEEEeecCCCCCCCCCEEEEEEEEecCCHHHH-hhcccCCCCccccCCCcCCCCeeecceEEEEEe
Confidence            44444455553 38988  889897 89999999999999888774 44444321    14688999999999999  99


Q ss_pred             CCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecce
Q 026414           80 EGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS  159 (239)
Q Consensus        80 ~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  159 (239)
                      +++++|++||||...                                                    |+|+||+.++...
T Consensus        89 ~~v~~~~vGdrV~~~----------------------------------------------------g~~aey~~v~~~~  116 (345)
T 2j3h_A           89 SGHPDYKKGDLLWGI----------------------------------------------------VAWEEYSVITPMT  116 (345)
T ss_dssp             ECSTTCCTTCEEEEE----------------------------------------------------EESBSEEEECCCT
T ss_pred             cCCCCCCCCCEEEee----------------------------------------------------cCceeEEEecccc
Confidence            999999999999731                                                    2899999998876


Q ss_pred             --eEecCC---CCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414          160 --VAKIDP---QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (239)
Q Consensus       160 --~~~~p~---~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~  233 (239)
                        ++++|+   .++++ ++.+++++.|||+++.+..++++|++|||+|+ |++|++++|+++..|+ +|+++++++++++
T Consensus       117 ~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~  194 (345)
T 2j3h_A          117 HAHFKIQHTDVPLSYY-TGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVD  194 (345)
T ss_dssp             TTCEEECCCSSCTTGG-GTTTSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHH
T ss_pred             cceeecCCCCCCHHHH-HHhccccHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence              999996   35555 67788899999998878889999999999997 9999999999999999 9999999999988


Q ss_pred             hhh
Q 026414          234 REF  236 (239)
Q Consensus       234 ~~~  236 (239)
                      .++
T Consensus       195 ~~~  197 (345)
T 2j3h_A          195 LLK  197 (345)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            876

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.81  E-value=7.6e-20  Score=192.15  Aligned_cols=156  Identities=17%  Similarity=0.137  Sum_probs=134.1

Q ss_pred             eEEEeecCCC-CC--CCeEEEEEeEeeechhhhhhhcCCCCCC-------CCCeeeeeeEEEEEEEeCCCCCCCCCCCEE
Q 026414           22 LVIEDVQVAP-PQ--AGEVRIKILFTALCHTDAYTWSGKDPEG-------LFPCILGHEAAGIVESVGEGVTEVQPGDHV   91 (239)
Q Consensus        22 ~~~~~~~~p~-~~--~~eVlVkv~~~~i~~~D~~~~~g~~~~~-------~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V   91 (239)
                      +.+.+.+... +.  ++||+|||.++++|+.|+.+..|..+..       ..|.++|+|++|+|          ++||+|
T Consensus      1544 l~~~~~~~~~~~~l~~~eVlVkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V----------~vGdrV 1613 (2512)
T 2vz8_A         1544 IRWVCSPLHYALPASCQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRD----------ASGRRV 1613 (2512)
T ss_dssp             EEEEECTTTTCCCHHHHTTEEEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEE----------TTSCCE
T ss_pred             eEEEecCcccccCCCCCceEEEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEE----------ccCCEE
Confidence            6676666543 33  7999999999999999999998875421       24568999999987          279999


Q ss_pred             eecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCCchh
Q 026414           92 IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK  171 (239)
Q Consensus        92 ~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~  171 (239)
                      ....                               .+|                  +|++|+++|...++++|+++++++
T Consensus      1614 ~g~~-------------------------------~~G------------------~~Aeyv~vp~~~v~~iPd~ls~~e 1644 (2512)
T 2vz8_A         1614 MGMV-------------------------------PAE------------------GLATSVLLLQHATWEVPSTWTLEE 1644 (2512)
T ss_dssp             EEEC-------------------------------SSC------------------CSBSEEECCGGGEEECCTTSCHHH
T ss_pred             EEee-------------------------------cCC------------------ceeeEEEcccceEEEeCCCCCHHH
Confidence            7432                               123                  899999999999999999999999


Q ss_pred             hhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          172 VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       172 aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ||.+++++.|||+++....++++|++|||+|+ |++|++++|+|+++|+ +|++++++++|.+.+++
T Consensus      1645 AA~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga-~Viat~~s~~k~~~l~~ 1710 (2512)
T 2vz8_A         1645 AASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGC-RVFTTVGSAEKRAYLQA 1710 (2512)
T ss_dssp             HTTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHHcCC-EEEEEeCChhhhHHHHh
Confidence            99999999999999988899999999999977 9999999999999999 99999999999888765

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.21  E-value=9.2e-12  Score=99.81  Aligned_cols=79  Identities=22%  Similarity=0.225  Sum_probs=61.3

Q ss_pred             ceeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       158 ~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      +.++++|+++++++|+.+++++.|||+++.+..++++|++|||+|+ |++|++++++++..|+ +|+++++++++.+.++
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~   80 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS   80 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            4678999999999999999899999998877789999999999996 9999999999999998 8999999998887665


Q ss_pred             h
Q 026414          237 W  237 (239)
Q Consensus       237 ~  237 (239)
                      +
T Consensus        81 ~   81 (198)
T 1pqw_A           81 R   81 (198)
T ss_dssp             T
T ss_pred             H
Confidence            3

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.60  E-value=8e-08  Score=78.87  Aligned_cols=117  Identities=9%  Similarity=-0.005  Sum_probs=77.0

Q ss_pred             CCCCCEEeecC-------ccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEec
Q 026414           85 VQPGDHVIPCY-------QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD  157 (239)
Q Consensus        85 ~~~Gd~V~~~~-------~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  157 (239)
                      +++||+|++.+       ...|+.|.+|+.+..++|......  +|                        ...+      
T Consensus         4 ~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~g~~--~G------------------------~~~~------   51 (248)
T 2yvl_A            4 FKEGEYVLIRFGEKKFLRKLLPKQSLSVKKSVLKFDEVIGKP--EG------------------------VKIN------   51 (248)
T ss_dssp             CCTTCEEEEEETTEEEEEECCTTCEEEETTEEEEGGGTTTCC--TT------------------------EEET------
T ss_pred             CCCCCEEEEEeCCeEEEEEEcCCCEEecCCceEEHHHhcCCC--CC------------------------CEEE------
Confidence            89999999998       778899999999988888744221  11                        1112      


Q ss_pred             ceeEecCCCCCchhhhhccc----ccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414          158 VSVAKIDPQAPLDKVCLLGC----GVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (239)
Q Consensus       158 ~~~~~~p~~~~~~~aa~l~~----~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~  233 (239)
                      ..+++.|+.....+.+....    ....+. .+....+++++++||.+|+| .|..+..+++. +. ++++++.+++.++
T Consensus        52 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G-~G~~~~~l~~~-~~-~v~~vD~~~~~~~  127 (248)
T 2yvl_A           52 GFEVYRPTLEEIILLGFERKTQIIYPKDSF-YIALKLNLNKEKRVLEFGTG-SGALLAVLSEV-AG-EVWTFEAVEEFYK  127 (248)
T ss_dssp             TEEEECCCHHHHHHHTSCCSSCCCCHHHHH-HHHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEECSCHHHHH
T ss_pred             EEEEeCCCHHHHHHhcCcCCCCcccchhHH-HHHHhcCCCCCCEEEEeCCC-ccHHHHHHHHh-CC-EEEEEecCHHHHH
Confidence            23333332211111111000    011122 24566778899999999998 58888888888 65 9999999999888


Q ss_pred             hhhh
Q 026414          234 REFW  237 (239)
Q Consensus       234 ~~~~  237 (239)
                      .+++
T Consensus       128 ~a~~  131 (248)
T 2yvl_A          128 TAQK  131 (248)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7764

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.12  E-value=1.4e-08  Score=90.27  Aligned_cols=132  Identities=17%  Similarity=0.084  Sum_probs=95.6

Q ss_pred             CCeeeeeeEEEEEEEeCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceee
Q 026414           63 FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYH  142 (239)
Q Consensus        63 ~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~  142 (239)
                      +-...|++.++.|..+|.+++++.+|+.+++-+-.                        .++.                .
T Consensus        73 ~~~~~g~~a~~~i~~v~~Glds~~vGe~~Il~qvk------------------------~~~~----------------~  112 (404)
T 1gpj_A           73 AWVKRGSEAVRHLFRVASGLESMMVGEQEILRQVK------------------------KAYD----------------R  112 (404)
T ss_dssp             CEEEEHHHHHHHHHHHHTTTTSSSTTCHHHHHHHH------------------------HHHH----------------H
T ss_pred             eeeecCchHhhhheeeccCCCCCcCCcchhHHHHH------------------------HHHH----------------H
Confidence            34578999999999999999999999987432110                        0000                0


Q ss_pred             ecCCcceeeeEEEecceeEecCCCCCchhhhhcccccchhhhhhhhhc---CCCCCCEEEEEcCCHHHHHHHHHHHHcCC
Q 026414          143 FMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA---KVEPGSIVAVFGLGTVGLAVAEGAKAAGA  219 (239)
Q Consensus       143 ~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~---~~~~g~~vlI~G~g~~g~~ai~~~~~~G~  219 (239)
                      ....|++++|+..+...++.+|++++.+.++. ..+..++|.++....   .-.+|++|+|+|+|.+|.++++.++..|+
T Consensus       113 ~~~~G~~~~~~~~~~~~a~~~~k~v~~~~~~~-~~~~s~a~~av~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~  191 (404)
T 1gpj_A          113 AARLGTLDEALKIVFRRAINLGKRAREETRIS-EGAVSIGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGV  191 (404)
T ss_dssp             HHHHTCCCHHHHHHHHHHHHHHHHHHHHSSTT-CSCCSHHHHHHHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCC
T ss_pred             HHHcCCchHHHHHHHHHHhhhhccCcchhhhc-CCCccHHHHHHHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCC
Confidence            00012567777777788888888877776655 336667777553221   13589999999999999999999999998


Q ss_pred             CeEEEEcCChhhH-hhh
Q 026414          220 SRVIGIDIDPKKF-DRE  235 (239)
Q Consensus       220 ~~vv~~~~~~~~~-~~~  235 (239)
                      ++|++++++.+|. +++
T Consensus       192 ~~V~v~~r~~~ra~~la  208 (404)
T 1gpj_A          192 RAVLVANRTYERAVELA  208 (404)
T ss_dssp             SEEEEECSSHHHHHHHH
T ss_pred             CEEEEEeCCHHHHHHHH
Confidence            8999999999886 444

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=96.93  E-value=0.0011  Score=57.71  Aligned_cols=42  Identities=29%  Similarity=0.279  Sum_probs=38.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++|+|+|+|.+|+++++.++.+|+ +|++++++++|++.+.+
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~  208 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLET  208 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHH
Confidence            4899999999999999999999999 99999999998877653

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=96.88  E-value=0.0023  Score=53.19  Aligned_cols=51  Identities=20%  Similarity=0.187  Sum_probs=41.4

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G-~~~vv~~~~~~~~~~~~~~  237 (239)
                      +.....++++++||-+|+|. |..++.+++..| ..++++++.+++.++.+++
T Consensus       104 i~~~~~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~  155 (277)
T 1o54_A          104 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAES  155 (277)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH
Confidence            45666789999999999877 888888888864 3499999999988877754

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=96.87  E-value=0.0018  Score=57.21  Aligned_cols=42  Identities=33%  Similarity=0.443  Sum_probs=38.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ++++|+|+|+|.+|+++++.++.+|+ +|++++++.++++.+.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~~~~~~~~  212 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQ  212 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCGGGHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence            58999999999999999999999999 8999999998877664

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=96.82  E-value=0.0019  Score=56.70  Aligned_cols=43  Identities=33%  Similarity=0.442  Sum_probs=39.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++++|+|+|+|.+|+++++.++.+|+ +|+++++++++++.+.+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~~~d~~~~~~~~~~~  213 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVES  213 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            68999999999999999999999999 79999999888776643

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=96.80  E-value=0.0021  Score=56.32  Aligned_cols=43  Identities=33%  Similarity=0.318  Sum_probs=39.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++++|+|+|+|.+|..+++.++.+|+ +|+++++++++++.+.+
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~  209 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDA  209 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHH
Confidence            68999999999999999999999999 99999999998776644

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.71  E-value=0.0033  Score=47.62  Aligned_cols=46  Identities=26%  Similarity=0.436  Sum_probs=38.9

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       190 ~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ....++++|+|+|+|.+|...++.++..|. .|+++++++++.+.+.
T Consensus        14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~   59 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLN   59 (155)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSC
T ss_pred             hcccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHH
Confidence            345678999999999999999999999998 9999999998877654

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=96.66  E-value=0.003  Score=55.32  Aligned_cols=43  Identities=28%  Similarity=0.417  Sum_probs=39.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++.+|+|+|+|.+|+.+++.++.+|+ +|++++++.++++.+.+
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~  225 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRPEVAEQVRS  225 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSGGGHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            67999999999999999999999999 89999999998877654

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=96.65  E-value=0.0031  Score=55.72  Aligned_cols=43  Identities=28%  Similarity=0.413  Sum_probs=39.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++.+|+|+|+|.+|+.+++.++.+|+ +|+++++++++++.+.+
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~  231 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRPAAKEQVAS  231 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSTTHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH
Confidence            67999999999999999999999999 99999999998877654

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=96.65  E-value=0.0039  Score=56.55  Aligned_cols=44  Identities=36%  Similarity=0.481  Sum_probs=40.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ..+|++|+|+|.|.+|..+++.++.+|+ +|+++++++++.+.+.
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~~~~~~A~  314 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDPINALQAM  314 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHH
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            6799999999999999999999999999 9999999998876654

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=96.59  E-value=0.00051  Score=51.53  Aligned_cols=55  Identities=11%  Similarity=0.025  Sum_probs=42.6

Q ss_pred             cchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          179 VPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       179 ~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      ++.++.++ .......+++++|+|+|.+|...++.++..|+ .|+++++++++.+.+
T Consensus         6 ~sv~~~a~-~~~~~~~~~~v~iiG~G~iG~~~a~~l~~~g~-~v~v~~r~~~~~~~~   60 (144)
T 3oj0_A            6 VSIPSIVY-DIVRKNGGNKILLVGNGMLASEIAPYFSYPQY-KVTVAGRNIDHVRAF   60 (144)
T ss_dssp             CSHHHHHH-HHHHHHCCCEEEEECCSHHHHHHGGGCCTTTC-EEEEEESCHHHHHHH
T ss_pred             ccHHHHHH-HHHHhccCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCHHHHHHH
Confidence            34555544 33333458999999999999999999988998 599999999887654

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=96.56  E-value=0.0039  Score=54.37  Aligned_cols=43  Identities=30%  Similarity=0.316  Sum_probs=38.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++++|+|+|+|.+|+.+++.++.+|+ +|+++++++++++.+.+
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~  207 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDD  207 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH
Confidence            46899999999999999999999999 99999999988776543

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=96.44  E-value=0.0069  Score=51.77  Aligned_cols=51  Identities=25%  Similarity=0.343  Sum_probs=40.3

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~-~~vv~~~~~~~~~~~~~~  237 (239)
                      +.....++++++||-+|+|. |..++.+++..|. .+|++++.+++.++.+++
T Consensus        97 ~l~~l~~~~g~~VLDiG~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~  148 (336)
T 2b25_A           97 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKK  148 (336)
T ss_dssp             HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Confidence            44555788999999998876 7777788887663 499999999988777754

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.01  E-value=0.012  Score=41.67  Aligned_cols=43  Identities=21%  Similarity=0.130  Sum_probs=36.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      .+.+++|+|+|.+|...++.+...|...|+++++++++.+.+.
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~   46 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLN   46 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Confidence            3468999999999999999999999338999999998877654

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.78  E-value=0.018  Score=42.63  Aligned_cols=43  Identities=19%  Similarity=0.180  Sum_probs=38.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      -.++++|.|.|.+|...++.++..|. .|+++++++++.+.+.+
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~   48 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRE   48 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH
Confidence            35789999999999999999999998 99999999998877653

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.73  E-value=0.014  Score=45.12  Aligned_cols=42  Identities=21%  Similarity=0.410  Sum_probs=37.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCChhhHhhhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~-G~~~vv~~~~~~~~~~~~~  236 (239)
                      .+++++|.|.|.+|...++.++.. |. .|+++++++++.+.+.
T Consensus        38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~   80 (183)
T 3c85_A           38 GHAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHR   80 (183)
T ss_dssp             TTCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHH
Confidence            367899999999999999999998 98 8999999998887664

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.68  E-value=0.018  Score=42.46  Aligned_cols=41  Identities=22%  Similarity=0.293  Sum_probs=36.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ..+++|.|+|.+|...++.+...|. .|+++++++++.+.+.
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~   46 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLE   46 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHH
Confidence            4679999999999999999999998 9999999998877664

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=95.66  E-value=0.025  Score=47.48  Aligned_cols=43  Identities=26%  Similarity=0.252  Sum_probs=38.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      -.+.++||+|+|++|.+++..+...|+++|+++.++.+|.+.+
T Consensus       125 l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~l  167 (283)
T 3jyo_A          125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQAL  167 (283)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence            4678999999999999999999999998899999999887654

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=95.62  E-value=0.035  Score=45.05  Aligned_cols=51  Identities=22%  Similarity=0.313  Sum_probs=41.2

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G-~~~vv~~~~~~~~~~~~~~  237 (239)
                      +....+++++++||-.|+|. |..+..+++..| ..++++++.+++..+.+++
T Consensus        85 i~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~  136 (255)
T 3mb5_A           85 IVAYAGISPGDFIVEAGVGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWE  136 (255)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEecCCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHH
Confidence            45667889999999998876 778888888853 3499999999988887764

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=95.61  E-value=0.014  Score=42.77  Aligned_cols=41  Identities=27%  Similarity=0.449  Sum_probs=35.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      +++++|+|+|.+|...++.+...|. .|+++++++++.+.+.
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~   46 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYA   46 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHTTT
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            4679999999999999999999998 7899999888776553

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=95.54  E-value=0.0061  Score=50.07  Aligned_cols=43  Identities=19%  Similarity=0.211  Sum_probs=36.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCChhhHhhhhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~-G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++.+||.+|.|. |..+..+++.. |. .++++|.+++.++.+++
T Consensus        84 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~  127 (269)
T 1p91_A           84 DKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAK  127 (269)
T ss_dssp             TTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCC-CHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHH
Confidence            6789999999988 88888888876 66 99999999998887764

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=95.45  E-value=0.046  Score=44.98  Aligned_cols=51  Identities=22%  Similarity=0.280  Sum_probs=40.8

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G-~~~vv~~~~~~~~~~~~~~  237 (239)
                      +.....++++++||-+|+| .|..+..+++..| ..++++++.+++.++.+++
T Consensus        91 i~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~  142 (280)
T 1i9g_A           91 IVHEGDIFPGARVLEAGAG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARR  142 (280)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEEccc-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence            4456678999999999987 6778888888753 3499999999988877754

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=95.44  E-value=0.027  Score=47.28  Aligned_cols=43  Identities=37%  Similarity=0.424  Sum_probs=37.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      --.|++|+|+|.|.+|..+++.++..|+ +|++++++.++.+.+
T Consensus       152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~~~~~~~~  194 (293)
T 3d4o_A          152 TIHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARESDLLARI  194 (293)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHH
Confidence            3478999999999999999999999999 999999998775543

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=95.44  E-value=0.029  Score=46.89  Aligned_cols=43  Identities=28%  Similarity=0.309  Sum_probs=38.3

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       193 ~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      -+|+++||+|+ +++|.+.++.+...|+ +|+++++++++++.+.
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~   70 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAI   70 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            36899999988 9999999999999999 9999999998887654

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=95.41  E-value=0.035  Score=46.57  Aligned_cols=44  Identities=23%  Similarity=0.242  Sum_probs=38.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ..+.++||+|+|..|.+++..+...|+++|+++.++.+|.+.+.
T Consensus       120 ~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La  163 (282)
T 3fbt_A          120 IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIY  163 (282)
T ss_dssp             CTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHC
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            46889999999999999999999999989999999998876554

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=95.34  E-value=0.032  Score=46.30  Aligned_cols=42  Identities=14%  Similarity=0.103  Sum_probs=36.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ++.+++|+|+|.+|.+++..+...|. +|++++++.+|.+.+.
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~-~V~v~~R~~~~~~~la  159 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELA  159 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHH
Confidence            67899999999999999999999996 9999999988865543

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=95.32  E-value=0.029  Score=50.60  Aligned_cols=42  Identities=40%  Similarity=0.508  Sum_probs=37.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      -.|++++|+|+|.+|...++.++..|+ +|+++++++.+.+.+
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~~~~a~~A  304 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEIDPICALQA  304 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHH
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence            479999999999999999999999999 999999998776544

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=95.32  E-value=0.035  Score=44.45  Aligned_cols=42  Identities=19%  Similarity=0.155  Sum_probs=36.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      .+.+|||+|+ |.+|...+..+...|. +|+++++++++.+.+.
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~   62 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNEEQGPELR   62 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHH
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECChHHHHHHH
Confidence            4679999998 9999999999999998 9999999988776543

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=95.23  E-value=0.03  Score=47.25  Aligned_cols=44  Identities=18%  Similarity=0.130  Sum_probs=38.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      -.+.+++|+|+|.+|.+++..+...|+.+|+++.++.+|.+.+.
T Consensus       139 l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la  182 (297)
T 2egg_A          139 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLV  182 (297)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHH
T ss_pred             CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence            36789999999999999999999999889999999988865543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=95.15  E-value=0.022  Score=48.15  Aligned_cols=48  Identities=19%  Similarity=0.192  Sum_probs=42.2

Q ss_pred             hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       189 ~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ..+++++++||.+|+|+.+..++.+++..|+ +|++++.+++.++.+++
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l~~Ar~  164 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRK  164 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHHHHHHH
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHHHHHHH
Confidence            4678999999999998878888888888898 99999999999988875

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=95.12  E-value=0.038  Score=46.48  Aligned_cols=43  Identities=35%  Similarity=0.385  Sum_probs=37.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      --.+.+++|+|.|.+|..+++.++.+|+ +|++++++.++.+.+
T Consensus       154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~~~~~~~~  196 (300)
T 2rir_A          154 TIHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSSAHLARI  196 (300)
T ss_dssp             CSTTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            3478999999999999999999999999 999999998776543

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=95.12  E-value=0.033  Score=46.44  Aligned_cols=43  Identities=19%  Similarity=0.020  Sum_probs=37.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      .+.+++|+|+|..|.+++..+...|+.+|+++.++.+|.+.+.
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la  161 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALR  161 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHH
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            6889999999999999999999999879999999998876553

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=95.09  E-value=0.028  Score=45.57  Aligned_cols=51  Identities=22%  Similarity=0.218  Sum_probs=41.2

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G-~~~vv~~~~~~~~~~~~~~  237 (239)
                      +.....++++++||-.|+|. |..+..+++..| ..++++++.+++.++.+++
T Consensus        88 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~  139 (258)
T 2pwy_A           88 MVTLLDLAPGMRVLEAGTGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAER  139 (258)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEECCCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence            44566789999999999875 888888888864 3499999999988887764

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=95.08  E-value=0.044  Score=45.62  Aligned_cols=43  Identities=23%  Similarity=0.173  Sum_probs=37.3

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       193 ~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      -.|.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+.
T Consensus        14 l~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~   57 (291)
T 3rd5_A           14 FAQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAA   57 (291)
T ss_dssp             CTTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            35789999988 9999999999989998 9999999998877654

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=95.06  E-value=0.05  Score=46.35  Aligned_cols=43  Identities=14%  Similarity=0.176  Sum_probs=36.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC---hhhHhhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID---PKKFDRE  235 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~---~~~~~~~  235 (239)
                      -.+.++||+|+|++|.+++..+...|+++|+++.++   .+|.+.+
T Consensus       152 l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~l  197 (315)
T 3tnl_A          152 IIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKT  197 (315)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHH
T ss_pred             ccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHH
Confidence            368899999999999999999999999889999998   6665543

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=95.06  E-value=0.042  Score=47.63  Aligned_cols=40  Identities=38%  Similarity=0.467  Sum_probs=35.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~  233 (239)
                      -+|++|.|.|.|.+|..+++.++.+|+ +|++.|.+.++.+
T Consensus       173 L~GktV~I~G~GnVG~~~A~~l~~~Ga-kVvvsD~~~~~~~  212 (355)
T 1c1d_A          173 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVA  212 (355)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCccHHH
Confidence            578999999999999999999999999 8889998876633

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=95.05  E-value=0.041  Score=48.87  Aligned_cols=43  Identities=33%  Similarity=0.363  Sum_probs=37.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .-.|++++|.|.|.+|...++.++.+|+ +|+++++++.+...+
T Consensus       217 ~L~GktV~ViG~G~IGk~vA~~Lra~Ga-~Viv~D~dp~ra~~A  259 (435)
T 3gvp_A          217 MFGGKQVVVCGYGEVGKGCCAALKAMGS-IVYVTEIDPICALQA  259 (435)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHH
T ss_pred             eecCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEeCChhhhHHH
Confidence            4589999999999999999999999999 899999988665433

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=95.03  E-value=0.033  Score=48.45  Aligned_cols=44  Identities=25%  Similarity=0.385  Sum_probs=38.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      --+|.+|+|.|.|.+|..+++.+...|+ +|++.+++.++++.+.
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~Ga-kVvv~D~~~~~l~~~a  213 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAV  213 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHH
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence            3578999999999999999999999999 8999999988776443

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=95.02  E-value=0.054  Score=46.13  Aligned_cols=43  Identities=16%  Similarity=0.159  Sum_probs=36.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC---hhhHhhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID---PKKFDRE  235 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~---~~~~~~~  235 (239)
                      -.+.++||+|+|+.|.+++..+...|+++|+++.++   .+|.+.+
T Consensus       146 l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~l  191 (312)
T 3t4e_A          146 MRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAF  191 (312)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHH
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHH
Confidence            367899999999999999999999999899999999   5555443

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.02  E-value=0.055  Score=39.27  Aligned_cols=40  Identities=25%  Similarity=0.449  Sum_probs=34.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      .+++|+|+|.+|...++.+...|. .|+++++++++.+.+.
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~   44 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKAS   44 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHH
Confidence            478999999999999999988998 8999999988776554

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=94.96  E-value=0.039  Score=45.55  Aligned_cols=42  Identities=26%  Similarity=0.233  Sum_probs=36.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      .++++||+|+ +++|...++.+...|+ +|+++++++++.+.+.
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~   71 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALA   71 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHH
Confidence            4689999988 9999999999889999 8999999988776553

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=94.94  E-value=0.04  Score=45.93  Aligned_cols=45  Identities=20%  Similarity=0.128  Sum_probs=38.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ...+.+++|+|+|..+.+++..+...|+++|+++.++.+|.+.+.
T Consensus       116 ~~~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la  160 (271)
T 1npy_A          116 LNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLA  160 (271)
T ss_dssp             CCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence            345689999999999999999999999888999999988865543

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=94.85  E-value=0.056  Score=44.79  Aligned_cols=41  Identities=22%  Similarity=0.200  Sum_probs=35.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .++++||+|+ +.+|...++.+...|+ +|+++++++++.+.+
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   72 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVV   72 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5689999988 9999999999989999 899999988776654

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=94.82  E-value=0.033  Score=45.91  Aligned_cols=43  Identities=16%  Similarity=0.107  Sum_probs=37.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      .+ +++|+|+|..|.+++..+...|+++|+++.++.+|.+.+.+
T Consensus       108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~  150 (253)
T 3u62_A          108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDF  150 (253)
T ss_dssp             CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCS
T ss_pred             CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence            46 99999999999999999999998899999999988776543

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=94.80  E-value=0.054  Score=45.44  Aligned_cols=43  Identities=28%  Similarity=0.370  Sum_probs=36.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       193 ~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      -.++++||+|+ |++|...+..+...|+ +|+++++++++++.+.
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~   72 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAV   72 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            36789999988 9999999999999998 8999999988776543

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=94.79  E-value=0.057  Score=45.24  Aligned_cols=44  Identities=11%  Similarity=0.083  Sum_probs=37.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      -.+.+++|+|+|.+|.+++..+...|+.+|+++.++.+|.+.+.
T Consensus       124 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la  167 (281)
T 3o8q_A          124 LKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLA  167 (281)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHH
T ss_pred             ccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHH
Confidence            36789999999999999999888899879999999998866543

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=94.71  E-value=0.045  Score=45.39  Aligned_cols=41  Identities=22%  Similarity=0.250  Sum_probs=35.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .+.++||+|+ |.+|...++.+...|+ +|+++++++++++.+
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   68 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKV   68 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            4678999988 9999999999989998 899999998876544

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=94.70  E-value=0.046  Score=44.72  Aligned_cols=41  Identities=29%  Similarity=0.386  Sum_probs=35.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .+.++||+|+ |.+|...+..+...|+ +|+++++++++++.+
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   69 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAV   69 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            5689999988 9999999998889999 899999998876654

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=94.69  E-value=0.062  Score=44.19  Aligned_cols=42  Identities=21%  Similarity=0.317  Sum_probs=35.5

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       193 ~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      -.++++||+|+ |.+|...++.+...|+ +|+++++++++++.+
T Consensus        19 l~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   61 (267)
T 1vl8_A           19 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEA   61 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            35689999988 9999999999999998 899999988766543

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=94.69  E-value=0.062  Score=44.28  Aligned_cols=41  Identities=24%  Similarity=0.357  Sum_probs=35.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .++++||+|+ |.+|...++.+...|+ +|++++++.++.+.+
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   72 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEEL   72 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHH
Confidence            4689999988 9999999999989998 899999988766543

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=94.68  E-value=0.061  Score=44.57  Aligned_cols=41  Identities=27%  Similarity=0.228  Sum_probs=35.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++++.+
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   67 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRV   67 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4689999988 9999999999989999 999999998876654

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=94.63  E-value=0.059  Score=44.62  Aligned_cols=41  Identities=32%  Similarity=0.366  Sum_probs=34.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .++++||+|+ +++|...+..+...|+ +|+++++++++.+.+
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   64 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAA   64 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5689999988 9999999998889999 899999998876654

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=94.59  E-value=0.067  Score=44.21  Aligned_cols=40  Identities=20%  Similarity=0.271  Sum_probs=34.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~  234 (239)
                      .++++||+|+ |.+|...+..+...|+ +|+++++++++.+.
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~   61 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRT   61 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            4689999988 9999999999999998 89999998876654

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=94.58  E-value=0.069  Score=44.19  Aligned_cols=41  Identities=32%  Similarity=0.370  Sum_probs=35.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .++++||+|+ |.+|...++.+...|+ +|+++++++++.+.+
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~   69 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADT   69 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4688999988 9999999999999998 899999988776543

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=94.55  E-value=0.044  Score=45.54  Aligned_cols=41  Identities=29%  Similarity=0.349  Sum_probs=34.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .|+++||+|+ |++|...++.+...|+ +|+++++++++++.+
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   73 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAA   73 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            5789999988 9999999999889999 899999998876654

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=94.53  E-value=0.072  Score=43.89  Aligned_cols=41  Identities=29%  Similarity=0.370  Sum_probs=35.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .+.++||+|+ |.+|...++.+...|+ +|+++++++++++.+
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   61 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDEC   61 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4689999988 9999999999999998 899999998776543

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=94.49  E-value=0.073  Score=44.24  Aligned_cols=42  Identities=19%  Similarity=0.258  Sum_probs=36.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      +++++||+|+ +++|...++.+...|+ +|+++++++++++.+.
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~   69 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVA   69 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            5689999988 9999999999989999 9999999988766543

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=94.47  E-value=0.053  Score=44.57  Aligned_cols=41  Identities=27%  Similarity=0.357  Sum_probs=35.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .++++||+|+ +.+|...++.+...|+ +|+++++++++++.+
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   60 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAA   60 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5689999988 9999999999999999 899999998776654

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=94.41  E-value=0.073  Score=47.52  Aligned_cols=42  Identities=33%  Similarity=0.439  Sum_probs=37.0

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (239)
Q Consensus       191 ~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~  233 (239)
                      ..-.|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+..
T Consensus       243 ~~L~GKTVgVIG~G~IGr~vA~~lrafGa-~Viv~d~dp~~a~  284 (464)
T 3n58_A          243 VMMAGKVAVVCGYGDVGKGSAQSLAGAGA-RVKVTEVDPICAL  284 (464)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHH
T ss_pred             CcccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCcchhh
Confidence            35689999999999999999999999999 9999998876543

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=94.37  E-value=0.082  Score=43.47  Aligned_cols=41  Identities=20%  Similarity=0.278  Sum_probs=35.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .+.++||+|+ |.+|...+..+...|+ +|+++++++++.+.+
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~   71 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEET   71 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHH
Confidence            4689999988 9999999999999998 899999988766543

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=94.36  E-value=0.059  Score=45.17  Aligned_cols=41  Identities=24%  Similarity=0.238  Sum_probs=35.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .++++||+|+ |.+|...++.+...|+ +|+++++++++++.+
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   81 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSPRELSSV   81 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            5689999988 9999999999999999 999999998876554

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=94.30  E-value=0.059  Score=44.50  Aligned_cols=41  Identities=24%  Similarity=0.236  Sum_probs=35.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .++++||+|+ +++|...+..+...|+ +|+++++++++.+.+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   68 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGI   68 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5689999988 9999999998889999 999999998776554

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=94.23  E-value=0.088  Score=43.80  Aligned_cols=41  Identities=17%  Similarity=0.231  Sum_probs=34.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhh
Q 026414          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (239)
Q Consensus       193 ~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~  234 (239)
                      -.+.++||+|+ |.+|...+..+...|+ +|+++++++++.+.
T Consensus        16 l~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~   57 (303)
T 1yxm_A           16 LQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKS   57 (303)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            35689999988 9999999999989998 89999998876654

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=94.22  E-value=0.075  Score=43.91  Aligned_cols=41  Identities=12%  Similarity=0.108  Sum_probs=35.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .++++||+|+ +++|...++.+...|+ +|+++++++++.+.+
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   67 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTA   67 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5789999988 9999999999889999 999999988765443

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=94.21  E-value=0.069  Score=43.97  Aligned_cols=41  Identities=29%  Similarity=0.251  Sum_probs=35.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .++++||+|+ |.+|...++.+...|+ +|+++++++++++.+
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~   67 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGTREDKLKEI   67 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5689999988 9999999999999998 899999998876654

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=94.20  E-value=0.058  Score=44.67  Aligned_cols=41  Identities=34%  Similarity=0.416  Sum_probs=35.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .++++||+|+ +++|...++.+...|+ +|+++++++++.+.+
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   73 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAV   73 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence            5789999987 9999999999999999 899999988766544

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=94.14  E-value=0.093  Score=43.70  Aligned_cols=42  Identities=24%  Similarity=0.237  Sum_probs=35.9

Q ss_pred             CCCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          193 EPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       193 ~~g~~vlI~G-~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .++.++||+| +|++|.+++..+...|+ +|+++++++++.+.+
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~-~V~i~~R~~~~~~~l  159 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAA  159 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCHHHHHHH
Confidence            4678999998 59999999999999998 799999988776544

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=94.14  E-value=0.079  Score=43.60  Aligned_cols=41  Identities=15%  Similarity=0.218  Sum_probs=35.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++++.+
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   56 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGH-PLLLLARRVERLKAL   56 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHh
Confidence            4689999988 9999999999989999 899999988876644

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=94.13  E-value=0.061  Score=44.60  Aligned_cols=42  Identities=33%  Similarity=0.456  Sum_probs=36.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      .++++||+|+ |.+|...++.+...|+ +|+++++++++.+.+.
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~   70 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAA   70 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            5689999987 9999999998889999 9999999988766543

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=94.10  E-value=0.098  Score=43.46  Aligned_cols=40  Identities=13%  Similarity=0.142  Sum_probs=34.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~  234 (239)
                      .+.++||+|+ |.+|...+..+...|+ +|+++++++++.+.
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r~~~~~~~   65 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKA   65 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            4689999988 9999999999989998 89999998876554

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=94.07  E-value=0.068  Score=44.18  Aligned_cols=43  Identities=26%  Similarity=0.152  Sum_probs=35.5

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       193 ~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ..++++||+|+ +++|...+..+...|+ +|+++++++++++.+.
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~   69 (272)
T 4dyv_A           26 TGKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRRLDALQETA   69 (272)
T ss_dssp             --CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            35688999988 9999999999989999 8999999988766543

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=94.00  E-value=0.061  Score=44.44  Aligned_cols=41  Identities=34%  Similarity=0.477  Sum_probs=35.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .|+++||+|+ +.+|...++.+...|+ +|+++++++++.+.+
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~   66 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQT   66 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4689999988 9999999999999999 999999998876654

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=93.98  E-value=0.074  Score=44.52  Aligned_cols=41  Identities=20%  Similarity=0.246  Sum_probs=35.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .+.++||+|+ |.+|...++.+...|+ +|+++++++++++.+
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~   66 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEET   66 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4688999988 9999999999989999 899999998776543

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=93.97  E-value=0.087  Score=43.69  Aligned_cols=42  Identities=17%  Similarity=0.092  Sum_probs=36.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      .+.+++|+|+|.+|.+++..+...|. +|+++.++.+|.+.+.
T Consensus       118 ~~~~vlvlGaGg~g~a~a~~L~~~G~-~v~v~~R~~~~a~~l~  159 (272)
T 1p77_A          118 PNQHVLILGAGGATKGVLLPLLQAQQ-NIVLANRTFSKTKELA  159 (272)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            57899999999999999999999995 9999999988766553

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=93.93  E-value=0.11  Score=42.38  Aligned_cols=40  Identities=23%  Similarity=0.260  Sum_probs=34.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~  234 (239)
                      .+.++||+|+ |.+|...++.+...|+ +|+++++++++.+.
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~   55 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQK   55 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCChhHHHH
Confidence            4688999988 9999999999889998 89999988766543

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=93.91  E-value=0.11  Score=42.19  Aligned_cols=42  Identities=21%  Similarity=0.101  Sum_probs=34.5

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414          191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (239)
Q Consensus       191 ~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~  233 (239)
                      ....+.++||+|+ |.+|...++.+...|+ +|++++++++..+
T Consensus        15 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~   57 (249)
T 1o5i_A           15 LGIRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELLK   57 (249)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred             hccCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHH
Confidence            3456789999988 9999999999989998 8999998875443

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=93.73  E-value=0.06  Score=45.01  Aligned_cols=43  Identities=9%  Similarity=0.111  Sum_probs=37.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      -.+.+++|+|+|.+|.+++..+...|+++|+++.++.+|.+.+
T Consensus       115 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~l  157 (277)
T 3don_A          115 IEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNW  157 (277)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTC
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            3578999999999999999999999988899999998886544

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=93.63  E-value=0.13  Score=42.37  Aligned_cols=37  Identities=30%  Similarity=0.384  Sum_probs=31.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      .+.++||+|+ +++|...++.+...|+ +|++++++++.
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~   67 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRTDGV   67 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCHHHH
Confidence            5789999988 9999999999989999 88888866543

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=93.62  E-value=0.13  Score=45.72  Aligned_cols=42  Identities=31%  Similarity=0.485  Sum_probs=37.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhh
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~  234 (239)
                      .-.|.+|+|.|.|.+|...++.++.+|+ +|+++++++.+...
T Consensus       208 ~L~GktVgIiG~G~IG~~vA~~Lka~Ga-~Viv~D~~p~~a~~  249 (436)
T 3h9u_A          208 MIAGKTACVCGYGDVGKGCAAALRGFGA-RVVVTEVDPINALQ  249 (436)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHH
T ss_pred             cccCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCChhhhHH
Confidence            3478999999999999999999999999 89999998876543

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=93.58  E-value=0.097  Score=42.87  Aligned_cols=35  Identities=31%  Similarity=0.468  Sum_probs=32.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      +.+|+|+|+|++|..+++.+...|+.+++++|.+.
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            47899999999999999999999998999999887

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=93.57  E-value=0.13  Score=42.77  Aligned_cols=40  Identities=20%  Similarity=0.160  Sum_probs=36.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      +.+++|+|+|..|.+++..+...| .+|+++.++.+|.+.+
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G-~~v~V~nRt~~ka~~l  157 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQG-LQVSVLNRSSRGLDFF  157 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSCTTHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHH
Confidence            889999999999999999999999 5999999999887654

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=93.50  E-value=0.081  Score=46.28  Aligned_cols=40  Identities=20%  Similarity=0.278  Sum_probs=35.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC----hhh
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID----PKK  231 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~----~~~  231 (239)
                      --+..+|+|.|+|..|..+++++..+|.++++++|++    .+|
T Consensus       189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R  232 (388)
T 1vl6_A          189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNEND  232 (388)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTS
T ss_pred             CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCC
Confidence            3466899999999999999999999999899999998    655

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=93.40  E-value=0.097  Score=43.40  Aligned_cols=40  Identities=20%  Similarity=0.162  Sum_probs=33.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh-hhHhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP-KKFDR  234 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~-~~~~~  234 (239)
                      .+.++||+|+ |.+|...++.+...|+ +|+++++++ ++.+.
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~   63 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYHNSAEAAVS   63 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeCCchHHHHH
Confidence            4678999988 9999999998888998 899998887 65543

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=93.35  E-value=0.17  Score=41.94  Aligned_cols=40  Identities=23%  Similarity=0.344  Sum_probs=32.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhhHhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDR  234 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~-~~~~~~~  234 (239)
                      .++++||+|+ +++|...+..+...|+ +|+++++ ++++.+.
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~   65 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRT   65 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCCHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHH
Confidence            4689999988 9999999999999999 8999888 4444443

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=93.21  E-value=0.11  Score=42.13  Aligned_cols=39  Identities=23%  Similarity=0.243  Sum_probs=32.7

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 026414          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (239)
Q Consensus       193 ~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~  232 (239)
                      ..++++||+|+ |.+|...++.+...|+ +|+++++++++.
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~   59 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSW-NTISIDFRENPN   59 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCTT
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCcccc
Confidence            34689999988 9999999999999999 899999887654

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=93.16  E-value=0.12  Score=42.18  Aligned_cols=41  Identities=27%  Similarity=0.384  Sum_probs=34.9

Q ss_pred             CCCEEEEEcC-C-HHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGL-G-TVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~-g-~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .++++||+|+ | ++|...+..+...|+ +|+++++++++.+.+
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~   63 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGET   63 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHH
Confidence            5789999988 7 799999998889998 899999998776554

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=93.14  E-value=0.12  Score=42.84  Aligned_cols=40  Identities=23%  Similarity=0.243  Sum_probs=33.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~  234 (239)
                      .+.++||+|+ |.+|...+..+...|+ +|+++++++++.+.
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~   83 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDS   83 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHH
Confidence            4678999988 9999999988888898 88888888776554

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=93.14  E-value=0.12  Score=43.84  Aligned_cols=41  Identities=22%  Similarity=0.178  Sum_probs=34.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc-CChhhHhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID-IDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~-~~~~~~~~~  235 (239)
                      .+.++||+|+ |.+|...++.+...|+ +|++++ +++++++.+
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~~r~~~~~~~~   87 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANAL   87 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHH
Confidence            4678999988 9999999999999998 899888 888766544

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=93.03  E-value=0.14  Score=42.52  Aligned_cols=42  Identities=21%  Similarity=0.144  Sum_probs=36.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      .+.+++|+|+|.+|.+.+..+...|+ .|++++++.++.+.+.
T Consensus       128 ~~~~v~iiGaG~~g~aia~~L~~~g~-~V~v~~r~~~~~~~l~  169 (275)
T 2hk9_A          128 KEKSILVLGAGGASRAVIYALVKEGA-KVFLWNRTKEKAIKLA  169 (275)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSHHHHHHHT
T ss_pred             CCCEEEEECchHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHH
Confidence            56799999999999999999999999 9999999988766543

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=93.00  E-value=0.2  Score=41.36  Aligned_cols=41  Identities=22%  Similarity=0.298  Sum_probs=33.1

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhhHhh
Q 026414          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDR  234 (239)
Q Consensus       193 ~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~-~~~~~~~  234 (239)
                      ..+.++||+|+ |.+|...++.+...|+ +|+++++ ++++.+.
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~   69 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAP   69 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHH
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHH
Confidence            35789999988 9999999999999999 8888874 6555443

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=92.93  E-value=0.14  Score=41.94  Aligned_cols=39  Identities=21%  Similarity=0.214  Sum_probs=31.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhhHh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFD  233 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~-~~~~~~  233 (239)
                      .++++||+|+ |.+|...++.+...|+ +|+++++ ++++.+
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~   68 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSNAEVAD   68 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHH
Confidence            5789999988 9999999998889999 8888887 444433

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=92.93  E-value=0.21  Score=41.73  Aligned_cols=34  Identities=26%  Similarity=0.341  Sum_probs=30.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~  228 (239)
                      .++++||+|+ +++|...++.+...|+ +|++++++
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~   61 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVC   61 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            5789999988 9999999999989999 89988876

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=92.89  E-value=0.15  Score=41.54  Aligned_cols=39  Identities=21%  Similarity=0.195  Sum_probs=32.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhhHh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFD  233 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~-~~~~~~  233 (239)
                      .+.++||+|+ |.+|...+..+...|+ +|+++++ ++++.+
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~   60 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAE   60 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHH
Confidence            4678999988 9999999999989998 8888887 665544

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=92.87  E-value=0.19  Score=41.87  Aligned_cols=41  Identities=20%  Similarity=0.229  Sum_probs=33.6

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGL-G--TVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~-g--~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .++++||+|+ |  ++|...++.+...|+ +|++++++++..+.+
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~   72 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRV   72 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHH
Confidence            5789999988 5  999999988889999 899999887554433

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=92.82  E-value=0.21  Score=41.58  Aligned_cols=37  Identities=24%  Similarity=0.250  Sum_probs=31.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      .|+++||+|+ |.+|...++.+...|+ +|+++++++++
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~   83 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEG   83 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchH
Confidence            5789999988 9999999999999999 88888877653

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=92.71  E-value=0.12  Score=42.36  Aligned_cols=38  Identities=24%  Similarity=0.154  Sum_probs=32.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~  232 (239)
                      .++++||+|+ |.+|...++.+...|+ +|+++++++++.
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~   64 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGH-RVIISYRTEHAS   64 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESSCCHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCChHHH
Confidence            4678999988 9999999998889999 888888887653

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=92.66  E-value=0.16  Score=41.68  Aligned_cols=40  Identities=30%  Similarity=0.244  Sum_probs=32.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhhHhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDR  234 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~-~~~~~~~  234 (239)
                      .++++||+|+ +++|...++.+...|+ +|+++++ ++++.+.
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~   68 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGA-KVAVNYASSAGAADE   68 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCChHHHHH
Confidence            4688999988 9999999999989999 7877776 5555443

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=92.66  E-value=0.15  Score=41.60  Aligned_cols=38  Identities=26%  Similarity=0.163  Sum_probs=32.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~  232 (239)
                      .+.++||+|+ |.+|...++.+...|+ +|++++++++++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~   58 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGD-KVAITYRSGEPP   58 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHhh
Confidence            4678999988 9999999999999998 898888876554

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=92.64  E-value=0.21  Score=42.56  Aligned_cols=42  Identities=17%  Similarity=0.190  Sum_probs=34.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHc-CCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~-G~~~vv~~~~~~~~~~~~  235 (239)
                      .+.+|||+|+ |.+|...++.+... |..+|+++++++++.+.+
T Consensus        20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~   63 (344)
T 2gn4_A           20 DNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEM   63 (344)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHH
Confidence            4689999988 99999998888888 866899999988765543

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=92.47  E-value=0.12  Score=42.40  Aligned_cols=40  Identities=33%  Similarity=0.345  Sum_probs=33.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~  234 (239)
                      .+.++||+|+ |.+|...+..+...|+ +|+++++++++.+.
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~   73 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYNSHPADEK   73 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTC-EEEEEESSSCCHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            4688999988 9999998888888898 89999888765443

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=92.45  E-value=0.13  Score=41.86  Aligned_cols=40  Identities=8%  Similarity=0.075  Sum_probs=33.1

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcC---CCeEEEEcCChhhHh
Q 026414          193 EPGSIVAVFGL-GTVGLAVAEGAKAAG---ASRVIGIDIDPKKFD  233 (239)
Q Consensus       193 ~~g~~vlI~G~-g~~g~~ai~~~~~~G---~~~vv~~~~~~~~~~  233 (239)
                      .++.++||+|+ |.+|...++.+...|   + +|++++++.++.+
T Consensus        19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~-~V~~~~r~~~~~~   62 (267)
T 1sny_A           19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAK   62 (267)
T ss_dssp             -CCSEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhcCCCCc-EEEEEecChhhhH
Confidence            35678999988 999999999888889   7 9999998876544

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=92.43  E-value=0.27  Score=40.48  Aligned_cols=40  Identities=23%  Similarity=0.231  Sum_probs=31.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhhHhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDR  234 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~-~~~~~~~  234 (239)
                      .++++||+|+ +++|...++.+...|+ +|+++++ ++++.+.
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~   71 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQA   71 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHH
Confidence            5789999988 9999999999889999 7777744 4444443

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=92.42  E-value=0.22  Score=41.50  Aligned_cols=40  Identities=18%  Similarity=0.196  Sum_probs=32.7

Q ss_pred             CCCCEEEEEcC-CH--HHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414          193 EPGSIVAVFGL-GT--VGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (239)
Q Consensus       193 ~~g~~vlI~G~-g~--~g~~ai~~~~~~G~~~vv~~~~~~~~~~  233 (239)
                      -.++++||+|+ |.  +|...++.+...|+ +|++++++++..+
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~   71 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKK   71 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHH
Confidence            35789999987 66  99999998889998 8999988865433

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=92.28  E-value=0.25  Score=40.58  Aligned_cols=40  Identities=18%  Similarity=0.180  Sum_probs=30.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCChhhHhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DIDPKKFDR  234 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~-~~~~~~~~~  234 (239)
                      .++++||+|+ +++|.+.++.+...|+ +|+++ .+++++.+.
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~   67 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEE   67 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHH
Confidence            5789999988 9999999888888999 77766 555555443

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=92.27  E-value=0.13  Score=42.91  Aligned_cols=40  Identities=18%  Similarity=0.174  Sum_probs=34.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .+.+++|+|+|.+|.+.+..+...|  +|++++++.++.+.+
T Consensus       127 ~~k~vlV~GaGgiG~aia~~L~~~G--~V~v~~r~~~~~~~l  166 (287)
T 1nvt_A          127 KDKNIVIYGAGGAARAVAFELAKDN--NIIIANRTVEKAEAL  166 (287)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS--EEEEECSSHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCC--CEEEEECCHHHHHHH
Confidence            5789999999999999998888888  899999988776554

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=92.26  E-value=0.14  Score=42.22  Aligned_cols=39  Identities=18%  Similarity=0.152  Sum_probs=33.8

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       196 ~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .++||+|+ |.+|...++.+...|+ +|+++++++++++.+
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~-~V~~~~r~~~~~~~~   61 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW-SLVLTGRREERLQAL   61 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            68999988 9999999999989998 899999998776554

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=92.12  E-value=0.23  Score=43.75  Aligned_cols=39  Identities=31%  Similarity=0.498  Sum_probs=34.2

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       191 ~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      .+.++++|+|+|+|.+|...++.++.+|+ ++++++.+++
T Consensus        31 ~~~~~~~IlIlG~G~lg~~~~~aa~~lG~-~v~v~d~~~~   69 (419)
T 4e4t_A           31 PILPGAWLGMVGGGQLGRMFCFAAQSMGY-RVAVLDPDPA   69 (419)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCTT
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCc
Confidence            35689999999999999999999999999 8888886643

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=92.06  E-value=0.23  Score=40.65  Aligned_cols=42  Identities=26%  Similarity=0.151  Sum_probs=33.2

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCChhhHhhh
Q 026414          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DIDPKKFDRE  235 (239)
Q Consensus       193 ~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~-~~~~~~~~~~  235 (239)
                      ..+.++||+|+ |.+|...++.+...|+ +|+++ .+++++.+.+
T Consensus        24 ~~~k~vlITGas~gIG~a~a~~l~~~G~-~V~~~~~~~~~~~~~~   67 (272)
T 4e3z_A           24 SDTPVVLVTGGSRGIGAAVCRLAARQGW-RVGVNYAANREAADAV   67 (272)
T ss_dssp             CCSCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCChhHHHHH
Confidence            35679999988 9999999999999999 66555 7777665543

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=92.04  E-value=0.22  Score=39.18  Aligned_cols=49  Identities=20%  Similarity=0.228  Sum_probs=39.8

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +.....++++++||-+|+|. |..++.+++. +. +|+++|.+++.++.+++
T Consensus        47 ~l~~l~~~~~~~vLDlGcG~-G~~~~~la~~-~~-~v~~vD~s~~~~~~a~~   95 (204)
T 3njr_A           47 TLAALAPRRGELLWDIGGGS-GSVSVEWCLA-GG-RAITIEPRADRIENIQK   95 (204)
T ss_dssp             HHHHHCCCTTCEEEEETCTT-CHHHHHHHHT-TC-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEecCCC-CHHHHHHHHc-CC-EEEEEeCCHHHHHHHHH
Confidence            34556788999999998875 7777788877 76 99999999998887764

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=92.03  E-value=0.33  Score=37.67  Aligned_cols=51  Identities=10%  Similarity=0.159  Sum_probs=41.0

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +.....++++++||-+|+|. |..++.+++.....+++++|.+++.++.+++
T Consensus        32 ~l~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~   82 (204)
T 3e05_A           32 TLSKLRLQDDLVMWDIGAGS-ASVSIEASNLMPNGRIFALERNPQYLGFIRD   82 (204)
T ss_dssp             HHHHTTCCTTCEEEEETCTT-CHHHHHHHHHCTTSEEEEEECCHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEECCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence            44566788999999999874 7788888888644599999999998887764

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=91.96  E-value=0.22  Score=42.04  Aligned_cols=35  Identities=43%  Similarity=0.498  Sum_probs=30.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (239)
Q Consensus       193 ~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~  228 (239)
                      -.++++||+|+ +++|...+..+...|+ +|++++++
T Consensus        25 l~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~   60 (322)
T 3qlj_A           25 VDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIG   60 (322)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCc
Confidence            35789999987 9999999998889999 99999876

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=91.96  E-value=0.14  Score=46.52  Aligned_cols=42  Identities=31%  Similarity=0.333  Sum_probs=33.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      .+.++||+|+|++|.+++..+...|+ +|+++.++.++.+.+.
T Consensus       363 ~~k~vlV~GaGGig~aia~~L~~~G~-~V~i~~R~~~~a~~la  404 (523)
T 2o7s_A          363 ASKTVVVIGAGGAGKALAYGAKEKGA-KVVIANRTYERALELA  404 (523)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHHCC--CEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            45689999999999999999999999 8999999988776554

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=91.88  E-value=0.24  Score=41.19  Aligned_cols=43  Identities=19%  Similarity=0.108  Sum_probs=33.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCC--CeEEEEcCChhhHhhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGA--SRVIGIDIDPKKFDREF  236 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~--~~vv~~~~~~~~~~~~~  236 (239)
                      .++++||+|+ +++|...+..+...|+  .+|+.+++++++++.+.
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~   77 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELK   77 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHH
Confidence            4689999988 9999988777666664  28999999988766543

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=91.68  E-value=0.14  Score=42.06  Aligned_cols=38  Identities=37%  Similarity=0.441  Sum_probs=32.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~  232 (239)
                      .++++||+|+ |++|...++.+...|+ +|++++++.++.
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~   65 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGA-RVAVADRAVAGI   65 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECSSCCTTS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHH
Confidence            5689999988 9999999999989999 899998876654

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=91.62  E-value=0.16  Score=41.54  Aligned_cols=37  Identities=16%  Similarity=0.263  Sum_probs=32.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      .++++||+|+ |.+|...+..+...|+ +|++++++.++
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~   64 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRSIKP   64 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhh
Confidence            4689999988 9999999999999999 89999887654

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=91.62  E-value=0.27  Score=41.43  Aligned_cols=35  Identities=23%  Similarity=0.301  Sum_probs=30.4

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (239)
Q Consensus       193 ~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~  228 (239)
                      -.++++||+|+ +++|...++.+...|+ +|++++++
T Consensus        44 l~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~   79 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLC   79 (317)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecc
Confidence            35789999988 9999999999999999 88888765

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=91.51  E-value=0.22  Score=40.79  Aligned_cols=40  Identities=30%  Similarity=0.302  Sum_probs=34.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      .+ +++|+|+|.+|...+..+...|+ +|++++++.++.+.+
T Consensus       116 ~~-~v~iiG~G~~g~~~a~~l~~~g~-~v~v~~r~~~~~~~l  155 (263)
T 2d5c_A          116 KG-PALVLGAGGAGRAVAFALREAGL-EVWVWNRTPQRALAL  155 (263)
T ss_dssp             CS-CEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHH
T ss_pred             CC-eEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            56 89999999999999999999998 899999998775544

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=91.49  E-value=0.34  Score=40.92  Aligned_cols=38  Identities=29%  Similarity=0.508  Sum_probs=34.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++
T Consensus       140 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~  177 (307)
T 1wwk_A          140 LEGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPYPNE  177 (307)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH
T ss_pred             cCCceEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCCh
Confidence            357899999999999999999999998 99999988765

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=91.35  E-value=0.37  Score=40.09  Aligned_cols=34  Identities=24%  Similarity=0.091  Sum_probs=30.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~  228 (239)
                      .++++||+|+ +.+|...+..+...|+ +|++++++
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~   82 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLP   82 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCG
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5789999988 9999999999999999 88888876

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=90.83  E-value=0.31  Score=39.72  Aligned_cols=40  Identities=23%  Similarity=0.149  Sum_probs=30.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEE-EcCChhhHhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIG-IDIDPKKFDR  234 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~-~~~~~~~~~~  234 (239)
                      .+.++||+|+ |++|...++.+...|+ +|++ ..+++++.+.
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~~G~-~v~i~~~r~~~~~~~   66 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAADGF-NIGVHYHRDAAGAQE   66 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCchHHHHH
Confidence            4578999988 9999999999999999 6644 5566655443

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=90.83  E-value=0.26  Score=40.61  Aligned_cols=37  Identities=22%  Similarity=0.266  Sum_probs=31.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      .++++||+|+ |.+|...++.+...|+ +|+++++++++
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~   65 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTE   65 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchH
Confidence            4688999988 9999999999999999 88888877543

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=90.78  E-value=0.45  Score=39.73  Aligned_cols=50  Identities=18%  Similarity=0.295  Sum_probs=41.1

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +.....++++++||-+|+|. |..+..+++..|+ ++++++.+++.++.+++
T Consensus        82 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~  131 (318)
T 2fk8_A           82 NLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQ  131 (318)
T ss_dssp             HHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCcCEEEEEcccc-hHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
Confidence            44566788999999999876 7778888887788 99999999988877754

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=90.70  E-value=0.22  Score=41.94  Aligned_cols=38  Identities=32%  Similarity=0.519  Sum_probs=29.5

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       192 ~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      -..+.+|||+|+ |.+|...++.+...|. .|++++++++
T Consensus        16 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~   54 (347)
T 4id9_A           16 PRGSHMILVTGSAGRVGRAVVAALRTQGR-TVRGFDLRPS   54 (347)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTC-CEEEEESSCC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCCCC
Confidence            456678999988 9999999999999998 8888887754

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=90.67  E-value=0.5  Score=36.88  Aligned_cols=51  Identities=24%  Similarity=0.335  Sum_probs=40.5

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~-~~vv~~~~~~~~~~~~~~  237 (239)
                      +......+++++||.+|+| .|..+..+++..|. .++++++.+++.++.+++
T Consensus        69 ~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~  120 (215)
T 2yxe_A           69 MCELLDLKPGMKVLEIGTG-CGYHAAVTAEIVGEDGLVVSIERIPELAEKAER  120 (215)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCC-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence            4455678899999999987 48888888888762 399999999988777754

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=90.60  E-value=0.29  Score=41.99  Aligned_cols=37  Identities=24%  Similarity=0.304  Sum_probs=32.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      .|+++||+|+ +.+|.+.+..+...|+ +|+++++++++
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~   81 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQP   81 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSC
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhh
Confidence            5789999988 9999999998888998 89999888764

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=90.56  E-value=0.42  Score=39.33  Aligned_cols=36  Identities=17%  Similarity=0.296  Sum_probs=30.2

Q ss_pred             CCCCEEEEEcC-CH--HHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          193 EPGSIVAVFGL-GT--VGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       193 ~~g~~vlI~G~-g~--~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      -.++++||+|+ |.  +|...++.+...|+ +|+++++++
T Consensus        24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~   62 (280)
T 3nrc_A           24 LAGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVGQ   62 (280)
T ss_dssp             TTTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECTT
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCch
Confidence            35689999986 55  99998888889999 899998877

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=90.55  E-value=0.44  Score=42.90  Aligned_cols=40  Identities=40%  Similarity=0.547  Sum_probs=36.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~  232 (239)
                      --.|.+|.|+|.|.+|..+++.++.+|+ +|++++++..+.
T Consensus       254 ~l~GktVgIIG~G~IG~~vA~~l~~~G~-~Viv~d~~~~~~  293 (479)
T 1v8b_A          254 LISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICA  293 (479)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHH
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHhCcC-EEEEEeCChhhH
Confidence            4578999999999999999999999999 999999998764

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=90.49  E-value=0.36  Score=39.47  Aligned_cols=40  Identities=28%  Similarity=0.263  Sum_probs=31.3

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhhHh
Q 026414          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFD  233 (239)
Q Consensus       193 ~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~-~~~~~~  233 (239)
                      -.++++||+|+ +++|...++.+...|+ +|+++++ ++++.+
T Consensus        16 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~   57 (270)
T 3is3_A           16 LDGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAE   57 (270)
T ss_dssp             CTTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHH
Confidence            35789999988 9999999999999999 7777654 444443

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=90.43  E-value=0.39  Score=37.24  Aligned_cols=84  Identities=18%  Similarity=0.253  Sum_probs=48.9

Q ss_pred             ceeeeEE-EecceeEecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 026414          148 TFSQYTV-VHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID  226 (239)
Q Consensus       148 ~~~~~~~-~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~  226 (239)
                      .|.+|.. .+....+.+++.+.+..+..-.  .......+  ...++++++||-+|+|. |..+..+++ .+...++++|
T Consensus        17 ~w~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~l--~~~~~~~~~vLDiG~G~-G~~~~~l~~-~~~~~v~~vD   90 (205)
T 3grz_A           17 EWEDYQPVFKDQEIIRLDPGLAFGTGNHQT--TQLAMLGI--ERAMVKPLTVADVGTGS-GILAIAAHK-LGAKSVLATD   90 (205)
T ss_dssp             TTCCCCCSSTTCEEEEESCC-----CCHHH--HHHHHHHH--HHHCSSCCEEEEETCTT-SHHHHHHHH-TTCSEEEEEE
T ss_pred             cccccccCCCCceeEEecCCcccCCCCCcc--HHHHHHHH--HHhccCCCEEEEECCCC-CHHHHHHHH-CCCCEEEEEE
Confidence            4566655 5666777777776554432100  00011111  11256889999998865 566666665 4656999999


Q ss_pred             CChhhHhhhhh
Q 026414          227 IDPKKFDREFW  237 (239)
Q Consensus       227 ~~~~~~~~~~~  237 (239)
                      .+++.++.+++
T Consensus        91 ~s~~~~~~a~~  101 (205)
T 3grz_A           91 ISDESMTAAEE  101 (205)
T ss_dssp             SCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            99988877764

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=90.41  E-value=0.35  Score=38.60  Aligned_cols=50  Identities=20%  Similarity=0.231  Sum_probs=40.8

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +.....++++++||-+|+| .|..+..+++..+ .++++++.+++.++.+++
T Consensus        83 ~~~~l~~~~~~~vLdiG~G-~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~  132 (235)
T 1jg1_A           83 MLEIANLKPGMNILEVGTG-SGWNAALISEIVK-TDVYTIERIPELVEFAKR  132 (235)
T ss_dssp             HHHHHTCCTTCCEEEECCT-TSHHHHHHHHHHC-SCEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEEeCC-cCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHH
Confidence            3455578899999999987 6888888888887 499999999988777754

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=90.35  E-value=0.45  Score=40.51  Aligned_cols=39  Identities=18%  Similarity=0.428  Sum_probs=32.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHc-CCCeEEEEcCChhhHhh
Q 026414          195 GSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDR  234 (239)
Q Consensus       195 g~~vlI~G~-g~~g~~ai~~~~~~-G~~~vv~~~~~~~~~~~  234 (239)
                      +.+|||+|+ |.+|...++.+... |. +|++++++.++.+.
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~   64 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDW-EVFGMDMQTDRLGD   64 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSC-EEEEEESCCTTTGG
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCC-EEEEEeCChhhhhh
Confidence            468999988 99999999888887 88 99999988766543

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=90.34  E-value=0.34  Score=39.56  Aligned_cols=38  Identities=21%  Similarity=0.212  Sum_probs=30.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc-CChhhH
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID-IDPKKF  232 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~-~~~~~~  232 (239)
                      .++++||+|+ +++|...++.+...|+ +|++++ ++.++.
T Consensus        24 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~   63 (269)
T 3gk3_A           24 AKRVAFVTGGMGGLGAAISRRLHDAGM-AVAVSHSERNDHV   63 (269)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEECSCHHHH
T ss_pred             cCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCchHHH
Confidence            5678999988 9999999998888999 888887 444443

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=90.19  E-value=0.2  Score=40.11  Aligned_cols=37  Identities=16%  Similarity=0.207  Sum_probs=32.3

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcC-CCeEEEEcCChhhHh
Q 026414          196 SIVAVFGL-GTVGLAVAEGAKAAG-ASRVIGIDIDPKKFD  233 (239)
Q Consensus       196 ~~vlI~G~-g~~g~~ai~~~~~~G-~~~vv~~~~~~~~~~  233 (239)
                      .+|||+|+ |.+|...++.+...| + +|+++++++++.+
T Consensus        24 k~vlVtGatG~iG~~l~~~L~~~G~~-~V~~~~R~~~~~~   62 (236)
T 3qvo_A           24 KNVLILGAGGQIARHVINQLADKQTI-KQTLFARQPAKIH   62 (236)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTE-EEEEEESSGGGSC
T ss_pred             cEEEEEeCCcHHHHHHHHHHHhCCCc-eEEEEEcChhhhc
Confidence            58999987 999999999999999 7 8999998887654

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=90.19  E-value=0.27  Score=42.00  Aligned_cols=38  Identities=29%  Similarity=0.553  Sum_probs=33.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~  232 (239)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++.
T Consensus       136 ~gktvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~  173 (324)
T 3evt_A          136 TGQQLLIYGTGQIGQSLAAKASALGM-HVIGVNTTGHPA  173 (324)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCCCC
T ss_pred             cCCeEEEECcCHHHHHHHHHHHhCCC-EEEEECCCcchh
Confidence            57899999999999999999999999 999999876543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=90.15  E-value=0.3  Score=36.70  Aligned_cols=50  Identities=14%  Similarity=0.190  Sum_probs=39.9

Q ss_pred             hhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       187 ~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      .....++++++||-+|+|. |..+..+++..+..++++++.+++.++.+++
T Consensus        18 ~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~   67 (178)
T 3hm2_A           18 ISALAPKPHETLWDIGGGS-GSIAIEWLRSTPQTTAVCFEISEERRERILS   67 (178)
T ss_dssp             HHHHCCCTTEEEEEESTTT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHH
T ss_pred             HHHhcccCCCeEEEeCCCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHH
Confidence            3455678899999999875 8888888887644499999999988887764

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=90.13  E-value=0.55  Score=39.73  Aligned_cols=39  Identities=28%  Similarity=0.431  Sum_probs=35.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~  232 (239)
                      -.|.+|.|+|.|.+|...++.++..|+ +|++.+++.++.
T Consensus       140 l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~  178 (313)
T 2ekl_A          140 LAGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYDILDIRE  178 (313)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSCCHH
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCcchh
Confidence            467899999999999999999999998 999999887654

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=89.99  E-value=0.58  Score=38.76  Aligned_cols=50  Identities=18%  Similarity=0.361  Sum_probs=41.6

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +.....++++++||-+|+|. |..+..+++..|. +|++++.+++.++.+++
T Consensus        64 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~  113 (302)
T 3hem_A           64 ALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKA  113 (302)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEECCHHHHHHHHH
T ss_pred             HHHHcCCCCcCEEEEeeccC-cHHHHHHHHhCCC-EEEEEECCHHHHHHHHH
Confidence            45666789999999999875 7788888888886 99999999988877754

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=89.84  E-value=0.47  Score=41.55  Aligned_cols=36  Identities=31%  Similarity=0.343  Sum_probs=32.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~  228 (239)
                      -+.-+|+|.|+|..|..+++++..+|+++|+++|++
T Consensus       186 l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~  221 (398)
T 2a9f_A          186 LDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF  221 (398)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            355688999999999999999999999999999987

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=89.77  E-value=0.7  Score=35.85  Aligned_cols=49  Identities=18%  Similarity=0.043  Sum_probs=39.1

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +......+++++||-+|+| .|..+..+++. +. ++++++.+++.++.+++
T Consensus        69 ~~~~l~~~~~~~vLdiG~G-~G~~~~~la~~-~~-~v~~vD~~~~~~~~a~~  117 (210)
T 3lbf_A           69 MTELLELTPQSRVLEIGTG-SGYQTAILAHL-VQ-HVCSVERIKGLQWQARR  117 (210)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEEcCC-CCHHHHHHHHh-CC-EEEEEecCHHHHHHHHH
Confidence            4455678899999999887 37777777777 65 99999999988887764

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=89.74  E-value=0.57  Score=39.98  Aligned_cols=38  Identities=29%  Similarity=0.466  Sum_probs=34.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      -.+.+|.|+|.|.+|...++.++..|. +|++.+++.++
T Consensus       148 l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~  185 (334)
T 2dbq_A          148 VYGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTRKE  185 (334)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECCCcch
Confidence            357899999999999999999999998 99999988766

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=89.52  E-value=0.55  Score=42.41  Aligned_cols=40  Identities=35%  Similarity=0.471  Sum_probs=36.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~  232 (239)
                      .-.|.+|.|+|.|.+|..+++.++.+|+ +|++++++..+.
T Consensus       274 ~L~GktVgIIG~G~IG~~vA~~l~~~G~-~V~v~d~~~~~~  313 (494)
T 3d64_A          274 MIAGKIAVVAGYGDVGKGCAQSLRGLGA-TVWVTEIDPICA  313 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSCHHHH
T ss_pred             ccCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCChHhH
Confidence            3578999999999999999999999999 999999988764

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=89.48  E-value=0.55  Score=39.56  Aligned_cols=36  Identities=22%  Similarity=0.248  Sum_probs=31.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      .+.+|||+|+ |.+|...+..+...|. .|+++++...
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~   60 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFST   60 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCC
Confidence            3579999988 9999999999999998 8999988543

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=89.38  E-value=0.76  Score=36.81  Aligned_cols=50  Identities=22%  Similarity=0.192  Sum_probs=40.3

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +.....++++.+||-+|+| .|..+..+++..|. ++++++.+++.++.+++
T Consensus        47 ~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~   96 (266)
T 3ujc_A           47 ILSDIELNENSKVLDIGSG-LGGGCMYINEKYGA-HTHGIDICSNIVNMANE   96 (266)
T ss_dssp             HTTTCCCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCC-CCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence            4456678899999999886 67777778877687 99999999988877764

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=89.29  E-value=0.52  Score=40.52  Aligned_cols=41  Identities=22%  Similarity=0.468  Sum_probs=35.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCChhhHhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDR  234 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~-~~G~~~vv~~~~~~~~~~~  234 (239)
                      -.|.+|.|+|.|.+|...++.++ ..|. +|++.+++.++.+.
T Consensus       161 l~g~~vgIIG~G~IG~~vA~~l~~~~G~-~V~~~d~~~~~~~~  202 (348)
T 2w2k_A          161 PRGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVAPADAET  202 (348)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSCCCHHH
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHhcCC-EEEEECCCCcchhh
Confidence            46789999999999999999999 9998 99999988765443

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=89.25  E-value=0.47  Score=39.82  Aligned_cols=38  Identities=34%  Similarity=0.433  Sum_probs=34.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~  232 (239)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++.
T Consensus       121 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~  158 (290)
T 3gvx_A          121 YGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRSSVDQ  158 (290)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSCCCT
T ss_pred             ecchheeeccCchhHHHHHHHHhhCc-EEEEEecccccc
Confidence            57899999999999999999999999 999999876543

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=89.21  E-value=0.37  Score=41.18  Aligned_cols=37  Identities=24%  Similarity=0.410  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++..+
T Consensus       144 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~  180 (330)
T 4e5n_A          144 DNATVGFLGMGAIGLAMADRLQGWGA-TLQYHEAKALD  180 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHTTTSCC-EEEEECSSCCC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCCCc
Confidence            57899999999999999999999999 99999988633

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=89.11  E-value=0.5  Score=37.48  Aligned_cols=38  Identities=21%  Similarity=0.253  Sum_probs=31.0

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCC-eEEEEcCChhhH
Q 026414          195 GSIVAVFGL-GTVGLAVAEGAKAAGAS-RVIGIDIDPKKF  232 (239)
Q Consensus       195 g~~vlI~G~-g~~g~~ai~~~~~~G~~-~vv~~~~~~~~~  232 (239)
                      +.++||+|+ |.+|...++.+...|.. +|+++++++++.
T Consensus        18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~   57 (242)
T 2bka_A           18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTF   57 (242)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCc
Confidence            578999987 99999999888888862 788888776543

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=88.87  E-value=0.67  Score=41.64  Aligned_cols=40  Identities=25%  Similarity=0.263  Sum_probs=33.8

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       191 ~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      .++++.++||+|+ |.+|...+..+...|+++|+.+.++..
T Consensus       222 ~~~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~  262 (486)
T 2fr1_A          222 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGP  262 (486)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGG
T ss_pred             CcCCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence            3578899999987 999999888888889866888888764

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=88.86  E-value=0.49  Score=40.30  Aligned_cols=39  Identities=26%  Similarity=0.336  Sum_probs=33.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~  233 (239)
                      .|.+|.|+|.|.+|...++.++..|. +|++++++.++.+
T Consensus       154 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~  192 (330)
T 2gcg_A          154 TQSTVGIIGLGRIGQAIARRLKPFGV-QRFLYTGRQPRPE  192 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-CEEEEESSSCCHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcchh
Confidence            57799999999999999999999998 8999998765444

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=88.86  E-value=0.53  Score=40.18  Aligned_cols=38  Identities=24%  Similarity=0.332  Sum_probs=34.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      -.|.+|.|+|.|.+|...++.++..|. +|++.+++.++
T Consensus       144 l~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~d~~~~~  181 (333)
T 2d0i_A          144 LYGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSRHRKV  181 (333)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCH
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcch
Confidence            357899999999999999999999998 99999988765

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=88.79  E-value=0.65  Score=39.00  Aligned_cols=36  Identities=31%  Similarity=0.416  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .+.+|+|+|+|++|..++..+...|..++.++|.+.
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            457999999999999999999999999999999765

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=88.76  E-value=0.46  Score=40.56  Aligned_cols=37  Identities=38%  Similarity=0.477  Sum_probs=33.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.+++.++
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~  181 (331)
T 1xdw_A          145 RNCTVGVVGLGRIGRVAAQIFHGMGA-TVIGEDVFEIK  181 (331)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCccH
Confidence            56799999999999999999999999 89999887654

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=88.70  E-value=0.74  Score=37.56  Aligned_cols=35  Identities=31%  Similarity=0.370  Sum_probs=31.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      +.+|+|+|+|++|..++..+...|+.+++++|.+.
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            57999999999999999999999998999987654

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=88.60  E-value=0.55  Score=40.47  Aligned_cols=39  Identities=18%  Similarity=0.210  Sum_probs=34.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~  232 (239)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.+++..+.
T Consensus       162 l~gktvGIIG~G~IG~~vA~~l~~~G~-~V~~~dr~~~~~  200 (351)
T 3jtm_A          162 LEGKTIGTVGAGRIGKLLLQRLKPFGC-NLLYHDRLQMAP  200 (351)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGCC-EEEEECSSCCCH
T ss_pred             ccCCEEeEEEeCHHHHHHHHHHHHCCC-EEEEeCCCccCH
Confidence            368899999999999999999999999 899999875433

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=88.55  E-value=0.97  Score=36.10  Aligned_cols=50  Identities=20%  Similarity=0.293  Sum_probs=39.7

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +.....++++.+||=+|.|. |..+..+++..|. .+++++.+++.++.+++
T Consensus        28 l~~~~~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~l~~a~~   77 (256)
T 1nkv_A           28 LGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKR   77 (256)
T ss_dssp             HHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHH
Confidence            44556788999999998865 6677788888787 99999999987776653

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=88.52  E-value=0.49  Score=39.67  Aligned_cols=36  Identities=19%  Similarity=0.192  Sum_probs=30.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      .+.+|||+|+ |.+|...++.+...|. +|++++++..
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~g~-~V~~~~r~~~   55 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQGH-EILVIDNFAT   55 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGGTC-EEEEEECCSS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCc
Confidence            4578999988 9999999998888998 8999888543

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=88.50  E-value=0.52  Score=40.82  Aligned_cols=41  Identities=22%  Similarity=0.288  Sum_probs=34.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~  233 (239)
                      -.|.+|.|+|.|.+|...++.++.+|+++|++.+++..+.+
T Consensus       162 l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~  202 (364)
T 2j6i_A          162 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKD  202 (364)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchh
Confidence            36889999999999999999999999833999997764443

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=88.47  E-value=0.56  Score=40.05  Aligned_cols=38  Identities=29%  Similarity=0.369  Sum_probs=34.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~  232 (239)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++.
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~  182 (333)
T 1j4a_A          145 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRNPE  182 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcchh
Confidence            57899999999999999999999999 999999877653

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=88.47  E-value=0.73  Score=37.88  Aligned_cols=36  Identities=19%  Similarity=0.319  Sum_probs=30.7

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          194 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       194 ~g~~vlI~G~---g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      .+.++||+|+   |.+|...++.+...|+ +|++++++++
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~   58 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGA-QLAFTYATPK   58 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEESSGG
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCCHH
Confidence            4688999976   5999999998888998 8999888764

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=88.43  E-value=0.56  Score=41.10  Aligned_cols=38  Identities=18%  Similarity=0.100  Sum_probs=33.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~  232 (239)
                      .|.++.|+|.|.+|...++.++.+|+ +|++.+++.++.
T Consensus       190 ~gktvGIIGlG~IG~~vA~~l~a~G~-~V~~~d~~~~~~  227 (393)
T 2nac_A          190 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPE  227 (393)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCH
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEEcCCccch
Confidence            67899999999999999999999998 999999876443

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=88.42  E-value=0.64  Score=38.99  Aligned_cols=35  Identities=31%  Similarity=0.420  Sum_probs=30.2

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       195 g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      +.+|||+|+ |.+|...+..+...|. +|++++++..
T Consensus        21 ~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~   56 (333)
T 2q1w_A           21 MKKVFITGICGQIGSHIAELLLERGD-KVVGIDNFAT   56 (333)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSS
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCCc
Confidence            468999988 9999999998888998 8999887653

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=88.39  E-value=0.7  Score=39.52  Aligned_cols=38  Identities=29%  Similarity=0.460  Sum_probs=34.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++
T Consensus       163 l~g~tvgIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~  200 (335)
T 2g76_A          163 LNGKTLGILGLGRIGREVATRMQSFGM-KTIGYDPIISP  200 (335)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSCH
T ss_pred             CCcCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcch
Confidence            367899999999999999999999998 99999987654

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=88.30  E-value=0.52  Score=40.28  Aligned_cols=37  Identities=35%  Similarity=0.438  Sum_probs=33.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++
T Consensus       144 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~  180 (333)
T 1dxy_A          144 GQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPYPMK  180 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCcch
Confidence            57899999999999999999999999 89999987654

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=88.25  E-value=0.71  Score=39.14  Aligned_cols=38  Identities=18%  Similarity=0.355  Sum_probs=33.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC-Chhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI-DPKK  231 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~-~~~~  231 (239)
                      -.|.+|.|+|.|.+|...++.++..|+ +|++.++ +.++
T Consensus       144 l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~  182 (320)
T 1gdh_A          144 LDNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASS  182 (320)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcCh
Confidence            367899999999999999999999998 9999998 6654

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=88.16  E-value=0.69  Score=36.62  Aligned_cols=40  Identities=23%  Similarity=0.327  Sum_probs=33.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      ..++.|+|+|.+|...+..+...|. .|+++++++++.+.+
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~-~V~~~~r~~~~~~~~   67 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGF-KVVVGSRNPKRTARL   67 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTC-CEEEEESSHHHHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4579999999999998888888898 888999998876654

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=88.04  E-value=0.72  Score=38.99  Aligned_cols=38  Identities=37%  Similarity=0.494  Sum_probs=33.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      -.|.+|.|+|.|.+|...++.++..|+ +|++.+++.++
T Consensus       142 l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~  179 (311)
T 2cuk_A          142 LQGLTLGLVGMGRIGQAVAKRALAFGM-RVVYHARTPKP  179 (311)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCS
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHCCC-EEEEECCCCcc
Confidence            367899999999999999999999998 89999987654

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=88.02  E-value=0.86  Score=41.25  Aligned_cols=39  Identities=26%  Similarity=0.344  Sum_probs=33.4

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       192 ~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      ++++.++||+|+ |.+|...+..+...|+++++.+.++..
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~  295 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGP  295 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGG
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCc
Confidence            578899999987 999999988888899867888887763

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=88.01  E-value=0.82  Score=40.75  Aligned_cols=40  Identities=15%  Similarity=0.042  Sum_probs=32.6

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHc---CCCeEEEEcCChhhH
Q 026414          192 VEPGSIVAVFGL-GTVGLAVAEGAKAA---GASRVIGIDIDPKKF  232 (239)
Q Consensus       192 ~~~g~~vlI~G~-g~~g~~ai~~~~~~---G~~~vv~~~~~~~~~  232 (239)
                      ...+.+|||+|+ |.+|...+..+...   |. +|++++++++..
T Consensus        70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~-~V~~l~R~~~~~  113 (478)
T 4dqv_A           70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDG-RLICLVRAESDE  113 (478)
T ss_dssp             CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTC-EEEEEECSSSHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCC-EEEEEECCCCcH
Confidence            346789999998 99999888777777   77 999999876543

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=87.93  E-value=0.86  Score=39.28  Aligned_cols=36  Identities=28%  Similarity=0.458  Sum_probs=32.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++.+
T Consensus       159 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~  194 (352)
T 3gg9_A          159 KGQTLGIFGYGKIGQLVAGYGRAFGM-NVLVWGRENS  194 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSHHH
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEECCCCC
Confidence            57899999999999999999999999 9999998754

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=87.77  E-value=0.58  Score=41.37  Aligned_cols=41  Identities=24%  Similarity=0.226  Sum_probs=31.8

Q ss_pred             cCC-CCCCEEEEEcC-CHHHHHHHHHHHH-cCCCeEEEEcCChhh
Q 026414          190 AKV-EPGSIVAVFGL-GTVGLAVAEGAKA-AGASRVIGIDIDPKK  231 (239)
Q Consensus       190 ~~~-~~g~~vlI~G~-g~~g~~ai~~~~~-~G~~~vv~~~~~~~~  231 (239)
                      ..+ +.++++||+|+ +++|++.+..+.. .|+ +|+++++++++
T Consensus        55 ~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA-~Vv~~~r~~~~   98 (422)
T 3s8m_A           55 GVRNDGPKKVLVIGASSGYGLASRITAAFGFGA-DTLGVFFEKPG   98 (422)
T ss_dssp             CCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCC
T ss_pred             cccccCCCEEEEECCChHHHHHHHHHHHHhCCC-EEEEEeCCchh
Confidence            444 45788899988 9999987777777 899 88888876544

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=87.45  E-value=1.1  Score=37.79  Aligned_cols=41  Identities=24%  Similarity=0.538  Sum_probs=35.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCChhhHhhhh
Q 026414          196 SIVAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDREF  236 (239)
Q Consensus       196 ~~vlI~G~g~~g~~ai~~~~~~G~~-~vv~~~~~~~~~~~~~  236 (239)
                      .+|.|+|.|.+|...+..++..|.. .|++.++++++.+.+.
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~   75 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV   75 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            5899999999999999999998864 7999999998877664

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=87.27  E-value=0.86  Score=39.11  Aligned_cols=36  Identities=25%  Similarity=0.344  Sum_probs=32.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .+.+|+|+|+|++|..++..+...|+.+++.+|...
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             hCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            468999999999999999999999999999998754

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=87.18  E-value=0.83  Score=39.28  Aligned_cols=36  Identities=25%  Similarity=0.429  Sum_probs=32.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++..
T Consensus       172 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~  207 (345)
T 4g2n_A          172 TGRRLGIFGMGRIGRAIATRARGFGL-AIHYHNRTRL  207 (345)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHTTTC-EEEEECSSCC
T ss_pred             CCCEEEEEEeChhHHHHHHHHHHCCC-EEEEECCCCc
Confidence            47899999999999999999999999 9999998753

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=87.10  E-value=0.36  Score=41.00  Aligned_cols=37  Identities=27%  Similarity=0.276  Sum_probs=33.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.+++.++
T Consensus       138 ~g~tvGIiG~G~IG~~vA~~l~~~G~-~V~~~dr~~~~  174 (315)
T 3pp8_A          138 EEFSVGIMGAGVLGAKVAESLQAWGF-PLRCWSRSRKS  174 (315)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTC-CEEEEESSCCC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCchh
Confidence            57899999999999999999999999 89999877653

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=87.08  E-value=1.2  Score=36.34  Aligned_cols=50  Identities=14%  Similarity=0.272  Sum_probs=39.8

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +.....++++.+||-+|.|. |..+..+++..|. ++++++.+++.++.+++
T Consensus        56 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~  105 (287)
T 1kpg_A           56 ALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQ  105 (287)
T ss_dssp             HHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHHcCCCCcCEEEEECCcc-cHHHHHHHHHcCC-EEEEEECCHHHHHHHHH
Confidence            44556788999999998865 6677788877788 99999999988777654

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=87.08  E-value=1.2  Score=37.34  Aligned_cols=40  Identities=25%  Similarity=0.262  Sum_probs=35.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      .+|.|+|.|.+|...+..+...|. .|++.++++++.+.+.
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~   61 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTLSKCDELV   61 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHH
Confidence            579999999999999998889998 9999999998877664

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=87.01  E-value=1.3  Score=36.91  Aligned_cols=38  Identities=24%  Similarity=0.168  Sum_probs=31.5

Q ss_pred             CCCCCEEEEEcCCH-HHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          192 VEPGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       192 ~~~g~~vlI~G~g~-~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      --.|.+++|+|.|. +|..++.++...|+ +|+++.+...
T Consensus       158 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t~  196 (285)
T 3l07_A          158 KTEGAYAVVVGASNVVGKPVSQLLLNAKA-TVTTCHRFTT  196 (285)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCS
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCch
Confidence            35899999999855 89999999999999 8888865443

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=86.96  E-value=0.75  Score=39.18  Aligned_cols=36  Identities=25%  Similarity=0.567  Sum_probs=32.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      .|.++.|+|.|.+|...++.++..|+ +|++.+++.+
T Consensus       139 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~  174 (324)
T 3hg7_A          139 KGRTLLILGTGSIGQHIAHTGKHFGM-KVLGVSRSGR  174 (324)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             ccceEEEEEECHHHHHHHHHHHhCCC-EEEEEcCChH
Confidence            57899999999999999999999999 9999988764

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=86.85  E-value=1.2  Score=35.04  Aligned_cols=46  Identities=24%  Similarity=0.234  Sum_probs=37.4

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcC-----CCeEEEEcCChhhHhhhhh
Q 026414          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAG-----ASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       191 ~~~~g~~vlI~G~g~~g~~ai~~~~~~G-----~~~vv~~~~~~~~~~~~~~  237 (239)
                      .++++++||-+|+|. |..+..+++..+     ..++++++.+++.++.+++
T Consensus        77 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~  127 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLE  127 (227)
T ss_dssp             TSCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHH
T ss_pred             hCCCCCEEEEECCCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHH
Confidence            578899999999876 778888888775     2389999999988877754

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=86.74  E-value=1.2  Score=37.51  Aligned_cols=41  Identities=20%  Similarity=0.263  Sum_probs=35.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ..+|.|+|.|.+|...++.+...|. .|++.++++++.+.+.
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~l~   71 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRTPARAASLA   71 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHH
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHHH
Confidence            3589999999999999988888998 8999999998877654

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=86.71  E-value=0.86  Score=38.89  Aligned_cols=35  Identities=23%  Similarity=0.260  Sum_probs=30.3

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       196 ~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      .+|||+|+ |.+|...+..+...|. .|++++++.++
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~-~V~~~~r~~~~   64 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY-EVHGLIRRSSN   64 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSS
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC-EEEEEecCCcc
Confidence            68999988 9999999999989998 89998877643

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=86.70  E-value=0.93  Score=39.58  Aligned_cols=37  Identities=32%  Similarity=0.346  Sum_probs=33.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      .|..+++|+|+|.++...+++++.+|+ +|+++|..++
T Consensus       202 ~P~~rL~IfGAGhva~ala~~a~~lg~-~V~v~D~R~~  238 (386)
T 2we8_A          202 APRPRMLVFGAIDFAAAVAQQGAFLGY-RVTVCDARPV  238 (386)
T ss_dssp             CCCCEEEEECCSTHHHHHHHHHHHTTC-EEEEEESCTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCchh
Confidence            466799999999999999999999999 9999987764

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=86.65  E-value=0.94  Score=38.03  Aligned_cols=35  Identities=20%  Similarity=0.148  Sum_probs=29.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .+.+|||+|+ |.+|...++.+...|. .|++++++.
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   61 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLMMDGH-EVTVVDNFF   61 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCS
T ss_pred             CCCEEEEEcCccHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            4578999988 9999999999988998 899888754

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=86.64  E-value=0.87  Score=39.73  Aligned_cols=33  Identities=27%  Similarity=0.302  Sum_probs=30.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID  226 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~  226 (239)
                      .++.+|+|+|+|.+|.+.++.++.+|+ ++++++
T Consensus        22 m~~~~I~ilGgG~lg~~l~~aa~~lG~-~v~~~d   54 (403)
T 3k5i_A           22 WNSRKVGVLGGGQLGRMLVESANRLNI-QVNVLD   54 (403)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEE
Confidence            357899999999999999999999999 888888

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=86.64  E-value=1.3  Score=39.02  Aligned_cols=34  Identities=44%  Similarity=0.480  Sum_probs=30.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEE-EEcC
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVI-GIDI  227 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv-~~~~  227 (239)
                      -+|.+|+|.|.|.+|..+++++...|+ +|+ +.|+
T Consensus       216 l~gk~vaVqG~GnVG~~~a~~L~~~Ga-kVVavsD~  250 (419)
T 3aoe_E          216 LRGARVVVQGLGQVGAAVALHAERLGM-RVVAVATS  250 (419)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEEET
T ss_pred             ccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEEcC
Confidence            468999999999999999999999999 777 6666

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=86.63  E-value=0.65  Score=37.40  Aligned_cols=35  Identities=26%  Similarity=0.279  Sum_probs=30.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .|.+|||.|+|.+|...+..+...|+ .|++++.+.
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~~   64 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPTV   64 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            56899999999999999999999999 888887654

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=86.62  E-value=0.5  Score=37.55  Aligned_cols=40  Identities=28%  Similarity=0.302  Sum_probs=32.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEE-EcCChhhHhhhh
Q 026414          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIG-IDIDPKKFDREF  236 (239)
Q Consensus       196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~-~~~~~~~~~~~~  236 (239)
                      -+|.|+|+|.+|.+.+..+...|. .|++ .++++++.+.+.
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~-~V~~v~~r~~~~~~~l~   64 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQI-PAIIANSRGPASLSSVT   64 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTC-CEEEECTTCGGGGHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCCHHHHHHHH
Confidence            368899999999998888888898 6666 899988877653

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=86.59  E-value=1.2  Score=35.25  Aligned_cols=48  Identities=17%  Similarity=0.243  Sum_probs=38.0

Q ss_pred             hhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       188 ~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ....++++++||-+|+|. |..+..+++..|..+|++++.+++.++.++
T Consensus        68 ~~~~~~~~~~VLDlGcG~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~  115 (230)
T 1fbn_A           68 KVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELL  115 (230)
T ss_dssp             CCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHH
T ss_pred             cccCCCCCCEEEEEcccC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHH
Confidence            444677899999998876 777888888877459999999998776654

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=86.47  E-value=0.84  Score=39.40  Aligned_cols=35  Identities=23%  Similarity=0.191  Sum_probs=30.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      .-.|+|+|+|..|++++..+...|. +|+++++.+.
T Consensus        23 ~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~E~~~~   57 (407)
T 3rp8_A           23 HMKAIVIGAGIGGLSAAVALKQSGI-DCDVYEAVKE   57 (407)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCCC
Confidence            3578999999999999999999999 8999988753

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=86.32  E-value=0.91  Score=41.24  Aligned_cols=38  Identities=16%  Similarity=0.078  Sum_probs=31.8

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCC
Q 026414          191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DID  228 (239)
Q Consensus       191 ~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~-~~~  228 (239)
                      .++++.++||+|+ |++|...++.+...|++.++.+ .++
T Consensus       247 ~~~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~  286 (525)
T 3qp9_A          247 WWQADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPS  286 (525)
T ss_dssp             SSCTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred             eecCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCC
Confidence            4678899999987 9999998888888898667777 776

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=86.29  E-value=0.66  Score=41.56  Aligned_cols=41  Identities=20%  Similarity=0.081  Sum_probs=33.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCChhhHhhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~-G~~~vv~~~~~~~~~~~~  235 (239)
                      .+.+|+|+|+|.+|..++..+... |. +|++++++.++.+.+
T Consensus        22 ~~k~VlIiGAGgiG~aia~~L~~~~g~-~V~v~~R~~~ka~~l   63 (467)
T 2axq_A           22 MGKNVLLLGSGFVAQPVIDTLAANDDI-NVTVACRTLANAQAL   63 (467)
T ss_dssp             -CEEEEEECCSTTHHHHHHHHHTSTTE-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEECChHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHH
Confidence            356899999999999988888877 66 899999998876654

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=86.28  E-value=0.92  Score=38.94  Aligned_cols=37  Identities=38%  Similarity=0.486  Sum_probs=33.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++
T Consensus       147 ~gktvgIiGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~  183 (343)
T 2yq5_A          147 YNLTVGLIGVGHIGSAVAEIFSAMGA-KVIAYDVAYNP  183 (343)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCG
T ss_pred             CCCeEEEEecCHHHHHHHHHHhhCCC-EEEEECCChhh
Confidence            47899999999999999999999999 99999987654

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=86.27  E-value=1.8  Score=34.92  Aligned_cols=38  Identities=37%  Similarity=0.405  Sum_probs=32.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      ..+.+|.|+|+|.+|...+..+...|. .|++.++++++
T Consensus        17 ~~~~kIgiIG~G~mG~alA~~L~~~G~-~V~~~~r~~~~   54 (245)
T 3dtt_A           17 FQGMKIAVLGTGTVGRTMAGALADLGH-EVTIGTRDPKA   54 (245)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCChhh
Confidence            346789999999999999998888998 89999999887

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=86.20  E-value=1.1  Score=38.32  Aligned_cols=36  Identities=25%  Similarity=0.198  Sum_probs=31.0

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcC-CCeEEEEcCChhh
Q 026414          195 GSIVAVFGL-GTVGLAVAEGAKAAG-ASRVIGIDIDPKK  231 (239)
Q Consensus       195 g~~vlI~G~-g~~g~~ai~~~~~~G-~~~vv~~~~~~~~  231 (239)
                      +.+|||+|+ |.+|...++.+...| . +|++++++.++
T Consensus        32 ~~~ilVtGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~   69 (377)
T 2q1s_A           32 NTNVMVVGGAGFVGSNLVKRLLELGVN-QVHVVDNLLSA   69 (377)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCS-EEEEECCCTTC
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCCc-eEEEEECCCCC
Confidence            468999988 999999999999999 8 89999887543

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=86.13  E-value=1.1  Score=37.66  Aligned_cols=34  Identities=21%  Similarity=0.327  Sum_probs=29.8

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       195 g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      +.+|||+|+ |.+|...+..+...|. .|++++++.
T Consensus        27 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   61 (352)
T 1sb8_A           27 PKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDNFA   61 (352)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            468999988 9999999999989998 899988764

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=86.00  E-value=1.6  Score=36.73  Aligned_cols=45  Identities=9%  Similarity=0.016  Sum_probs=36.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCChhhHhhhhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~-G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ....++.|+|+|.+|...+..+... |...|.+.++++++.+.+.+
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~  178 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFAD  178 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHH
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Confidence            4567899999999999877766654 87799999999988766543

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=85.97  E-value=0.65  Score=43.01  Aligned_cols=33  Identities=27%  Similarity=0.321  Sum_probs=27.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI  227 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~  227 (239)
                      .|+++||+|+ +++|.+.+..+...|+ +|+++++
T Consensus        18 ~gk~~lVTGas~GIG~aiA~~La~~Ga-~Vv~~~r   51 (613)
T 3oml_A           18 DGRVAVVTGAGAGLGREYALLFAERGA-KVVVNDL   51 (613)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEC--
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            5788999988 9999999998889999 8888876

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=85.81  E-value=1.1  Score=38.46  Aligned_cols=36  Identities=22%  Similarity=0.305  Sum_probs=31.0

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       195 g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      ..+|||+|+ |.+|...++.+...|. +|+++++++++
T Consensus        29 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~   65 (379)
T 2c5a_A           29 NLKISITGAGGFIASHIARRLKHEGH-YVIASDWKKNE   65 (379)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCS
T ss_pred             CCeEEEECCccHHHHHHHHHHHHCCC-eEEEEECCCcc
Confidence            468999988 9999999999888998 89999887654

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=85.63  E-value=0.84  Score=39.34  Aligned_cols=34  Identities=32%  Similarity=0.380  Sum_probs=29.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      ...|+|+|+|..|++++..+...|. +|+++++.+
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~   59 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNGI-DVSVYERDN   59 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTC-EEEEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            3579999999999999999988998 999998765

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=85.60  E-value=1.7  Score=33.98  Aligned_cols=46  Identities=28%  Similarity=0.371  Sum_probs=36.6

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHhhhhh
Q 026414          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       191 ~~~~g~~vlI~G~g~~g~~ai~~~~~~G~-~~vv~~~~~~~~~~~~~~  237 (239)
                      .++++++||-+|+|. |..+..+++..|. .++++++.+++.++.+++
T Consensus        74 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~  120 (226)
T 1i1n_A           74 QLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVN  120 (226)
T ss_dssp             TSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred             hCCCCCEEEEEcCCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Confidence            378899999998865 7777788887763 299999999988877753

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=85.55  E-value=1.9  Score=36.33  Aligned_cols=38  Identities=24%  Similarity=0.185  Sum_probs=32.0

Q ss_pred             CCCCCEEEEEcCC-HHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          192 VEPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       192 ~~~g~~vlI~G~g-~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      --.|.+++|+|.| .+|..++.++...|+ +|+++.+...
T Consensus       162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~~~~T~  200 (300)
T 4a26_A          162 EMAGKRAVVLGRSNIVGAPVAALLMKENA-TVTIVHSGTS  200 (300)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTSC
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCCC
Confidence            4589999999985 589999999999999 8888876433

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=85.51  E-value=0.88  Score=38.44  Aligned_cols=37  Identities=19%  Similarity=0.352  Sum_probs=29.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcC-CCeEEEEcCChhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAG-ASRVIGIDIDPKK  231 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G-~~~vv~~~~~~~~  231 (239)
                      ++.+|||+|+ |.+|...++.+...| . .|+++++++++
T Consensus        45 ~~~~vlVtGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~   83 (357)
T 2x6t_A           45 EGRMIIVTGGAGFIGSNIVKALNDKGIT-DILVVDNLKDG   83 (357)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCC-CEEEEECCSSG
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCc-EEEEEecCCCc
Confidence            3467999988 999999999998899 6 88888877654

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=85.29  E-value=1.1  Score=40.32  Aligned_cols=36  Identities=31%  Similarity=0.352  Sum_probs=32.1

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       195 g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      +.+|||+|+ |.+|...+..+...|. .|++++++..+
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~-~V~~l~R~~~~  183 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGH-EVIQLVRKEPK  183 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCC
Confidence            679999988 9999999999999998 99999988665

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=85.25  E-value=1.7  Score=36.37  Aligned_cols=51  Identities=20%  Similarity=0.223  Sum_probs=39.6

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G-~~~vv~~~~~~~~~~~~~~  237 (239)
                      +.....++++++||-+|+|. |..+..+++..+ -.+|++++.+++.++.+++
T Consensus        67 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~  118 (317)
T 1dl5_A           67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR  118 (317)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCcCEEEEecCCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH
Confidence            44566788999999998866 777777777654 2369999999988877764

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=85.23  E-value=1.1  Score=38.03  Aligned_cols=34  Identities=26%  Similarity=0.292  Sum_probs=29.6

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       196 ~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      .+|||+|+ |.+|...++.+...|. +|++++++.+
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~   59 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGY-EVHGIVRRSS   59 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCS
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCcc
Confidence            57999988 9999999999988998 8998887754

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=85.10  E-value=1.6  Score=39.33  Aligned_cols=38  Identities=26%  Similarity=0.259  Sum_probs=31.4

Q ss_pred             CCCC--CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          192 VEPG--SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       192 ~~~g--~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      ++++  .++||+|+ |++|...++.+...|+++++.+.++.
T Consensus       234 ~~~~~~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~  274 (496)
T 3mje_A          234 KRPPVHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRG  274 (496)
T ss_dssp             CCCCCCSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSG
T ss_pred             CCCCCCCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCC
Confidence            3445  89999987 99999988888889987888888763

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=85.05  E-value=1.6  Score=36.89  Aligned_cols=45  Identities=18%  Similarity=0.175  Sum_probs=36.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChhhHhhhhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~-~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +...+++|+|+|.+|...+..+.. .+.+.|.+.+++.+|.+.+.+
T Consensus       123 ~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~  168 (322)
T 1omo_A          123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVS  168 (322)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHH
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHH
Confidence            567899999999999988776665 567799999999988776543

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=84.94  E-value=1.1  Score=33.60  Aligned_cols=49  Identities=24%  Similarity=0.251  Sum_probs=37.6

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +.......++++||-+|+|. |..+..+++.. . ++++++.+++.++.+++
T Consensus        25 ~~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~-~-~v~~~D~~~~~~~~a~~   73 (192)
T 1l3i_A           25 IMCLAEPGKNDVAVDVGCGT-GGVTLELAGRV-R-RVYAIDRNPEAISTTEM   73 (192)
T ss_dssp             HHHHHCCCTTCEEEEESCTT-SHHHHHHHTTS-S-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCC-CHHHHHHHHhc-C-EEEEEECCHHHHHHHHH
Confidence            33455678999999998866 77777777655 4 99999999988777654

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=84.87  E-value=1.7  Score=39.03  Aligned_cols=36  Identities=28%  Similarity=0.314  Sum_probs=30.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .....|+|+|+|..|+.++..+...|. +|++++..+
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~G~-~V~liEk~~  125 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALLGA-RVVLVEKRI  125 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCS
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHCCC-eEEEEEecc
Confidence            445789999999999998888888998 899998764

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=84.81  E-value=0.61  Score=40.68  Aligned_cols=38  Identities=16%  Similarity=0.137  Sum_probs=31.6

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       192 ~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      ..++.+|||+|+ |.+|...+..+...|. +|++++++++
T Consensus        66 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~R~~~  104 (427)
T 4f6c_A           66 HRPLGNTLLTGATGFLGAYLIEALQGYSH-RIYCFIRADN  104 (427)
T ss_dssp             CCCCEEEEEECTTSHHHHHHHHHHTTTEE-EEEEEEECSS
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHHcCCC-EEEEEECCCC
Confidence            345668999998 9999998888877888 8998888876

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=84.79  E-value=0.96  Score=39.65  Aligned_cols=34  Identities=18%  Similarity=0.165  Sum_probs=29.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      ...|+|+|+|..|+.++..+...|. +|+++++.+
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~-~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDV-DVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTC-EEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCC-eEEEEcCCC
Confidence            3579999999999999988888999 999998765

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=84.78  E-value=1.3  Score=39.45  Aligned_cols=40  Identities=38%  Similarity=0.603  Sum_probs=34.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      .+|.|+|+|.+|...++.+...|. .|+++++++++++.+.
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~~~~~~~~~   77 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAK   77 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHH
Confidence            579999999999998888888898 9999999998776543

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=84.78  E-value=1.4  Score=36.82  Aligned_cols=40  Identities=20%  Similarity=0.270  Sum_probs=33.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      .+|.|+|+|.+|...+..+...|. .|+++++++++.+.+.
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~   70 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRTAEKCDLFI   70 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSGGGGHHHH
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHH
Confidence            469999999999998888888898 7999999988876553

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=84.76  E-value=1.1  Score=39.27  Aligned_cols=42  Identities=24%  Similarity=0.269  Sum_probs=31.4

Q ss_pred             hcCC-CCCCEEEEEcC-CHHHHHHHHHHHH-cCCCeEEEEcCChhh
Q 026414          189 TAKV-EPGSIVAVFGL-GTVGLAVAEGAKA-AGASRVIGIDIDPKK  231 (239)
Q Consensus       189 ~~~~-~~g~~vlI~G~-g~~g~~ai~~~~~-~G~~~vv~~~~~~~~  231 (239)
                      ...+ ..++++||+|+ +++|.+.+..+.. .|+ +|+++++++++
T Consensus        40 ~~~~~~~gKvaLVTGas~GIG~AiA~~LA~g~GA-~Vv~~~~~~~~   84 (405)
T 3zu3_A           40 EGPIANGPKRVLVIGASTGYGLAARITAAFGCGA-DTLGVFFERPG   84 (405)
T ss_dssp             HCCCTTCCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCC
T ss_pred             cCCcCCCCCEEEEeCcchHHHHHHHHHHHHhcCC-EEEEEeCCchh
Confidence            3444 55678899987 9999987777777 899 88888766543

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=84.72  E-value=1.3  Score=38.40  Aligned_cols=36  Identities=25%  Similarity=0.289  Sum_probs=32.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++..
T Consensus       175 ~gktvGIIGlG~IG~~vA~~l~~fG~-~V~~~d~~~~  210 (365)
T 4hy3_A          175 AGSEIGIVGFGDLGKALRRVLSGFRA-RIRVFDPWLP  210 (365)
T ss_dssp             SSSEEEEECCSHHHHHHHHHHTTSCC-EEEEECSSSC
T ss_pred             CCCEEEEecCCcccHHHHHhhhhCCC-EEEEECCCCC
Confidence            47899999999999999999999999 9999998753

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=84.69  E-value=2  Score=36.13  Aligned_cols=40  Identities=18%  Similarity=0.115  Sum_probs=32.8

Q ss_pred             CCCCCEEEEEcCC-HHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 026414          192 VEPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (239)
Q Consensus       192 ~~~g~~vlI~G~g-~~g~~ai~~~~~~G~~~vv~~~~~~~~~  232 (239)
                      --.|.+++|+|.| .+|..++.++...|+ +|+++.+..+.+
T Consensus       162 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t~~L  202 (301)
T 1a4i_A          162 PIAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSKTAHL  202 (301)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSSH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEECCcccH
Confidence            3589999999997 589999999999998 888886654433

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=84.68  E-value=1.9  Score=34.74  Aligned_cols=50  Identities=26%  Similarity=0.286  Sum_probs=39.4

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +.....++++.+||-+|.|. |..+..+++..|. ++++++.+++.++.+++
T Consensus        53 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~  102 (273)
T 3bus_A           53 MIALLDVRSGDRVLDVGCGI-GKPAVRLATARDV-RVTGISISRPQVNQANA  102 (273)
T ss_dssp             HHHHSCCCTTCEEEEESCTT-SHHHHHHHHHSCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEeCCCC-CHHHHHHHHhcCC-EEEEEeCCHHHHHHHHH
Confidence            44666788999999998864 6667777877787 99999999987776653

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=84.68  E-value=1.3  Score=39.45  Aligned_cols=36  Identities=33%  Similarity=0.514  Sum_probs=30.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      +++++||+|+ |++|...++.+...|+ +|+++++++.
T Consensus       212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga-~Vvl~~r~~~  248 (454)
T 3u0b_A          212 DGKVAVVTGAARGIGATIAEVFARDGA-TVVAIDVDGA  248 (454)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECGGG
T ss_pred             CCCEEEEeCCchHHHHHHHHHHHHCCC-EEEEEeCCcc
Confidence            5789999987 9999998888888899 8888887643

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=84.67  E-value=0.67  Score=36.73  Aligned_cols=47  Identities=15%  Similarity=0.316  Sum_probs=37.2

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       190 ~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ....++++||-+|+| .|..+..+++.....++++++.+++.++.+++
T Consensus        50 ~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~   96 (233)
T 2gpy_A           50 LKMAAPARILEIGTA-IGYSAIRMAQALPEATIVSIERDERRYEEAHK   96 (233)
T ss_dssp             HHHHCCSEEEEECCT-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHH
T ss_pred             HhccCCCEEEEecCC-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence            345678899999887 67778888888743499999999988887764

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=84.62  E-value=1.6  Score=37.49  Aligned_cols=36  Identities=28%  Similarity=0.388  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .+.+|+|+|+|++|..++..+...|..++.++|.+.
T Consensus       117 ~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          117 KNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             hCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            367999999999999999999999999999998764

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=84.61  E-value=0.96  Score=35.71  Aligned_cols=46  Identities=24%  Similarity=0.351  Sum_probs=36.5

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCC------CeEEEEcCChhhHhhhhh
Q 026414          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGA------SRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       191 ~~~~g~~vlI~G~g~~g~~ai~~~~~~G~------~~vv~~~~~~~~~~~~~~  237 (239)
                      .++++++||-+|+|. |..+..+++..+.      .++++++.+++.++.+++
T Consensus        81 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~  132 (227)
T 1r18_A           81 HLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKA  132 (227)
T ss_dssp             TCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHH
T ss_pred             hCCCCCEEEEECCCc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHH
Confidence            578899999998875 7777778876652      389999999988777654

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=84.44  E-value=0.97  Score=38.45  Aligned_cols=36  Identities=25%  Similarity=0.270  Sum_probs=30.8

Q ss_pred             CCCCCEEEEEcCC-HHHHHHHHHHHHcCCCeEEEEcCC
Q 026414          192 VEPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDID  228 (239)
Q Consensus       192 ~~~g~~vlI~G~g-~~g~~ai~~~~~~G~~~vv~~~~~  228 (239)
                      --.|.+++|+|+| .+|..+++++...|+ +|++++++
T Consensus       174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gA-tVtv~nR~  210 (320)
T 1edz_A          174 RLYGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVN  210 (320)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSS
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHCCC-EEEEEeCc
Confidence            3478999999997 469999999999998 88888765

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=84.39  E-value=0.84  Score=39.50  Aligned_cols=39  Identities=21%  Similarity=0.271  Sum_probs=34.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      ..|..+++|+|+|.++.+.+++++.+|+ .|+++|..++.
T Consensus       196 ~~p~~~L~I~GaGhva~aLa~la~~lgf-~V~v~D~R~~~  234 (362)
T 3on5_A          196 YSPKERLIIFGAGPDVPPLVTFASNVGF-YTVVTDWRPNQ  234 (362)
T ss_dssp             ECCCEEEEEECCSTTHHHHHHHHHHHTE-EEEEEESCGGG
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEECCCccc
Confidence            3466789999999999999999999999 99999887764

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=84.34  E-value=1.4  Score=37.03  Aligned_cols=36  Identities=44%  Similarity=0.637  Sum_probs=32.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      .|.++.|+|.|.+|...++.++..|+ +|++.+++.+
T Consensus       123 ~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~dr~~~  158 (303)
T 1qp8_A          123 QGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPK  158 (303)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcc
Confidence            57899999999999999999999998 8999987653

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=84.20  E-value=2.2  Score=35.58  Aligned_cols=41  Identities=27%  Similarity=0.251  Sum_probs=33.3

Q ss_pred             CCCCCEEEEEcCC-HHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414          192 VEPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (239)
Q Consensus       192 ~~~g~~vlI~G~g-~~g~~ai~~~~~~G~~~vv~~~~~~~~~~  233 (239)
                      --.|.+++|+|.| .+|..++.++...|+ +|+++.+..+.++
T Consensus       157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gA-tVtv~h~~t~~L~  198 (285)
T 3p2o_A          157 DLEGKDAVIIGASNIVGRPMATMLLNAGA-TVSVCHIKTKDLS  198 (285)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSCHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCchhHH
Confidence            3589999999985 589999999999999 8888876554443

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=84.19  E-value=1.3  Score=33.75  Aligned_cols=40  Identities=23%  Similarity=0.233  Sum_probs=33.3

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCC---------CeEEEEcCChhh
Q 026414          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGA---------SRVIGIDIDPKK  231 (239)
Q Consensus       191 ~~~~g~~vlI~G~g~~g~~ai~~~~~~G~---------~~vv~~~~~~~~  231 (239)
                      .++++++||-+|+|. |..+..+++..|.         .+|+++|.++.+
T Consensus        19 ~~~~~~~vLDlGcG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~   67 (196)
T 2nyu_A           19 ILRPGLRVLDCGAAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF   67 (196)
T ss_dssp             CCCTTCEEEEETCCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC
T ss_pred             CCCCCCEEEEeCCCC-CHHHHHHHHHhccccccccCCCceEEEEechhcc
Confidence            367899999999987 8888899998874         489999988743

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=84.14  E-value=1.4  Score=33.68  Aligned_cols=48  Identities=29%  Similarity=0.270  Sum_probs=37.0

Q ss_pred             hcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChhhHhhhhh
Q 026414          189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       189 ~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G-~~~vv~~~~~~~~~~~~~~  237 (239)
                      ...++++++||-+|+|. |..+..+++..+ ..+++++|.+++.++.+++
T Consensus        17 ~~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~   65 (197)
T 3eey_A           17 KMFVKEGDTVVDATCGN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTK   65 (197)
T ss_dssp             HHHCCTTCEEEESCCTT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH
T ss_pred             HhcCCCCCEEEEcCCCC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence            44678899999988865 677777888754 2399999999988877754

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=84.04  E-value=1.3  Score=37.99  Aligned_cols=36  Identities=42%  Similarity=0.457  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.+++.+
T Consensus       167 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~  202 (347)
T 1mx3_A          167 RGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLS  202 (347)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcc
Confidence            57899999999999999999999999 8999987654

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=84.02  E-value=1  Score=36.40  Aligned_cols=37  Identities=27%  Similarity=0.362  Sum_probs=30.0

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          194 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       194 ~g~~vlI~G~---g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      .++++||+|+   +++|...++.+...|+ +|++++++.++
T Consensus        19 ~~k~vlITGas~~~giG~~~a~~l~~~G~-~v~~~~~~~~~   58 (267)
T 3gdg_A           19 KGKVVVVTGASGPKGMGIEAARGCAEMGA-AVAITYASRAQ   58 (267)
T ss_dssp             TTCEEEETTCCSSSSHHHHHHHHHHHTSC-EEEECBSSSSS
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHHCCC-eEEEEeCCcch
Confidence            4689999976   4999998888889998 88888776543

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=83.97  E-value=1.3  Score=37.94  Aligned_cols=37  Identities=32%  Similarity=0.417  Sum_probs=33.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      .|.++.|+|.|.+|...++.++..|. +|++.+++.++
T Consensus       170 ~gktiGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~  206 (340)
T 4dgs_A          170 KGKRIGVLGLGQIGRALASRAEAFGM-SVRYWNRSTLS  206 (340)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCT
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCccc
Confidence            47899999999999999999999999 99999887654

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=83.79  E-value=2  Score=36.09  Aligned_cols=40  Identities=33%  Similarity=0.363  Sum_probs=32.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ..+|.|+|+|.+|.+.+..+...|. .|+.+ .++++.+.+.
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~-~~~~~~~~i~   58 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGH-EVILI-ARPQHVQAIE   58 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTC-EEEEE-CCHHHHHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC-eEEEE-EcHhHHHHHH
Confidence            3579999999999998888888897 88888 7777766554

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=83.58  E-value=2.1  Score=35.59  Aligned_cols=43  Identities=12%  Similarity=-0.006  Sum_probs=34.5

Q ss_pred             hhcCCCCCCEEEEEcCC-HHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 026414          188 NTAKVEPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (239)
Q Consensus       188 ~~~~~~~g~~vlI~G~g-~~g~~ai~~~~~~G~~~vv~~~~~~~~~  232 (239)
                      ...+ -.|.+++|+|.| .+|..++.++...|+ +|+++.+..+.+
T Consensus       144 ~~~~-l~Gk~vvVvG~s~iVG~plA~lL~~~gA-tVtv~~~~t~~L  187 (276)
T 3ngx_A          144 DYYG-YHENTVTIVNRSPVVGRPLSMMLLNRNY-TVSVCHSKTKDI  187 (276)
T ss_dssp             HHHT-CCSCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSCH
T ss_pred             HHhC-cCCCEEEEEcCChHHHHHHHHHHHHCCC-eEEEEeCCcccH
Confidence            4444 789999999985 689999999999999 888887654433

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=83.31  E-value=2.6  Score=33.05  Aligned_cols=49  Identities=20%  Similarity=0.310  Sum_probs=38.1

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +......+++++||-+|+|. |..+..+++.. . ++++++.+++.++.+++
T Consensus        62 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~-~-~v~~vD~~~~~~~~a~~  110 (231)
T 1vbf_A           62 MLDELDLHKGQKVLEIGTGI-GYYTALIAEIV-D-KVVSVEINEKMYNYASK  110 (231)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHS-S-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEEcCCC-CHHHHHHHHHc-C-EEEEEeCCHHHHHHHHH
Confidence            44555778999999998875 77777777764 4 99999999988877754

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=83.24  E-value=2.3  Score=36.56  Aligned_cols=40  Identities=15%  Similarity=0.307  Sum_probs=35.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      -+|.|+|.|.+|...+..+...|. .|++.++++++.+.+.
T Consensus        23 mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~   62 (358)
T 4e21_A           23 MQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALE   62 (358)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHH
T ss_pred             CEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHH
Confidence            579999999999999998889998 9999999998877654

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=82.91  E-value=1.5  Score=37.24  Aligned_cols=33  Identities=18%  Similarity=0.125  Sum_probs=28.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      -.|+|+|+|..|+.++..+...|. +|++++..+
T Consensus        18 ~dvvIIGgG~~Gl~~A~~La~~G~-~V~llE~~~   50 (382)
T 1ryi_A           18 YEAVVIGGGIIGSAIAYYLAKENK-NTALFESGT   50 (382)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCC
Confidence            468888999999998888888998 899998754

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=82.81  E-value=1.2  Score=37.99  Aligned_cols=37  Identities=38%  Similarity=0.510  Sum_probs=32.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      .|.+|.|+|.|.+|...++.++..|. +|++.+++.++
T Consensus       163 ~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~dr~~~~  199 (333)
T 3ba1_A          163 SGKRVGIIGLGRIGLAVAERAEAFDC-PISYFSRSKKP  199 (333)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTC-CEEEECSSCCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCchh
Confidence            57789999999999999999999998 89999887654

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=82.64  E-value=1.4  Score=40.07  Aligned_cols=33  Identities=21%  Similarity=0.242  Sum_probs=28.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       197 ~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      .|+|+|+|+.|++++..+...|. +|+++++.+.
T Consensus        28 dVlIVGaGpaGl~~A~~La~~G~-~V~vlEr~~~   60 (549)
T 2r0c_A           28 DVLILGGGPVGMALALDLAHRQV-GHLVVEQTDG   60 (549)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSCS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence            68999999999999988888998 8999987653

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=82.06  E-value=1.6  Score=32.90  Aligned_cols=46  Identities=20%  Similarity=0.205  Sum_probs=35.3

Q ss_pred             hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       189 ~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ...++++++||=+|+|. |..+..+++. +. +|+++|.+++.++.+++
T Consensus        17 ~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~-~v~~vD~s~~~l~~a~~   62 (185)
T 3mti_A           17 AEVLDDESIVVDATMGN-GNDTAFLAGL-SK-KVYAFDVQEQALGKTSQ   62 (185)
T ss_dssp             HTTCCTTCEEEESCCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHH
T ss_pred             HHhCCCCCEEEEEcCCC-CHHHHHHHHh-CC-EEEEEECCHHHHHHHHH
Confidence            44578899998887754 6666677766 65 99999999988877754

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=82.06  E-value=1.4  Score=38.56  Aligned_cols=34  Identities=32%  Similarity=0.424  Sum_probs=29.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      -.|+|+|+|..|++++..+...|. +|++++..+.
T Consensus        28 ~dViIIGgG~AGl~aA~~La~~G~-~V~llEk~~~   61 (417)
T 3v76_A           28 QDVVIIGAGAAGMMCAIEAGKRGR-RVLVIDHARA   61 (417)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence            358888999999999888888998 8999987763

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=81.98  E-value=3  Score=34.76  Aligned_cols=37  Identities=22%  Similarity=0.051  Sum_probs=31.2

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       192 ~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      --.|.+++|+|. +.+|..++.++...|+ +|+++.+..
T Consensus       158 ~l~Gk~vvVvGrs~iVG~plA~lL~~~gA-tVtv~hs~T  195 (286)
T 4a5o_A          158 DLYGMDAVVVGASNIVGRPMALELLLGGC-TVTVTHRFT  195 (286)
T ss_dssp             CCTTCEEEEECTTSTTHHHHHHHHHHTTC-EEEEECTTC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCC
Confidence            358999999998 4589999999999999 888887643

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=81.94  E-value=1.9  Score=38.17  Aligned_cols=40  Identities=25%  Similarity=0.243  Sum_probs=32.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      -+|.|+|+|.+|+..+..+.. |. .|+++++++++.+.+.+
T Consensus        37 mkIaVIGlG~mG~~lA~~La~-G~-~V~~~D~~~~~v~~l~~   76 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ-NH-EVVALDIVQAKVDMLNQ   76 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TS-EEEEECSCHHHHHHHHT
T ss_pred             CEEEEECcCHHHHHHHHHHHc-CC-eEEEEecCHHHhhHHhc
Confidence            479999999999886666555 87 99999999998877643

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=81.89  E-value=2.4  Score=35.40  Aligned_cols=40  Identities=20%  Similarity=0.107  Sum_probs=33.1

Q ss_pred             CCCCCEEEEEcCC-HHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 026414          192 VEPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (239)
Q Consensus       192 ~~~g~~vlI~G~g-~~g~~ai~~~~~~G~~~vv~~~~~~~~~  232 (239)
                      --.|.+++|+|.| .+|.-++.++...|+ +|+++.+..+.+
T Consensus       156 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t~~L  196 (288)
T 1b0a_A          156 DTFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRFTKNL  196 (288)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSSCSCH
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHHCCC-eEEEEeCCchhH
Confidence            4588999999997 579999999999998 888887665444

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=81.80  E-value=2.9  Score=37.06  Aligned_cols=34  Identities=41%  Similarity=0.515  Sum_probs=29.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEE-EEcC
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVI-GIDI  227 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv-~~~~  227 (239)
                      -+|.+|+|.|.|.+|..+++++...|+ +|+ +.|+
T Consensus       233 l~g~~vaVqGfGnVG~~~a~~L~e~Ga-kvVavsD~  267 (440)
T 3aog_A          233 VEGARVAIQGFGNVGNAAARAFHDHGA-RVVAVQDH  267 (440)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEECS
T ss_pred             ccCCEEEEeccCHHHHHHHHHHHHCCC-EEEEEEcC
Confidence            468999999999999999999999999 776 5555

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=81.76  E-value=1.5  Score=36.33  Aligned_cols=33  Identities=18%  Similarity=0.057  Sum_probs=28.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (239)
Q Consensus       195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~  228 (239)
                      ...|+|+|+|..|+.++..+...|. +|++++..
T Consensus        22 ~~~vvIIG~G~aGl~aA~~l~~~g~-~v~vie~~   54 (338)
T 3itj_A           22 HNKVTIIGSGPAAHTAAIYLARAEI-KPILYEGM   54 (338)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CCEEECCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEecC
Confidence            3578999999999999999999998 78888874

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=81.64  E-value=2.3  Score=39.31  Aligned_cols=36  Identities=25%  Similarity=0.344  Sum_probs=32.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .+.+|+|+|+|++|..++..+...|+.+++.+|.+.
T Consensus       325 ~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~  360 (615)
T 4gsl_A          325 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  360 (615)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            467999999999999999999999999999999765

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=81.60  E-value=1.9  Score=36.77  Aligned_cols=36  Identities=28%  Similarity=0.355  Sum_probs=32.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      .|.++.|+|.|.+|...++.++..|+ +|++.++...
T Consensus       140 ~g~tvGIiG~G~IG~~va~~~~~fg~-~v~~~d~~~~  175 (334)
T 3kb6_A          140 NRLTLGVIGTGRIGSRVAMYGLAFGM-KVLCYDVVKR  175 (334)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             cCcEEEEECcchHHHHHHHhhcccCc-eeeecCCccc
Confidence            47899999999999999999999999 9999987643

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=81.27  E-value=2  Score=41.05  Aligned_cols=38  Identities=21%  Similarity=0.253  Sum_probs=31.9

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHH-HcCCCeEEEEcCCh
Q 026414          192 VEPGSIVAVFGL-GTVGLAVAEGAK-AAGASRVIGIDIDP  229 (239)
Q Consensus       192 ~~~g~~vlI~G~-g~~g~~ai~~~~-~~G~~~vv~~~~~~  229 (239)
                      +.++.++||+|+ |++|...++.+. ..|++.++.+.++.
T Consensus       527 ~~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~  566 (795)
T 3slk_A          527 WDAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRG  566 (795)
T ss_dssp             CCTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSG
T ss_pred             cccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCc
Confidence            467899999987 999999888776 78997788888884

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=81.24  E-value=1.6  Score=38.72  Aligned_cols=36  Identities=42%  Similarity=0.437  Sum_probs=30.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      ..+.+|+|+|+|+.|+.++..++..|. +|++++..+
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~~G~-~V~v~e~~~  155 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRAKGY-EVHVYDRYD  155 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHHHTC-CEEEECSSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            346789999999999999999888998 899998764

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=81.17  E-value=1.6  Score=38.68  Aligned_cols=33  Identities=27%  Similarity=0.411  Sum_probs=30.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCC--CeEEEEc
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGA--SRVIGID  226 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~--~~vv~~~  226 (239)
                      .+.+++|+|+|..|.+++..+...|+  +++++++
T Consensus       185 ~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd  219 (439)
T 2dvm_A          185 SEITLALFGAGAAGFATLRILTEAGVKPENVRVVE  219 (439)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence            56799999999999999999999998  7899998

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=80.89  E-value=2.4  Score=37.40  Aligned_cols=35  Identities=26%  Similarity=0.397  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .|.++.|+|.|.+|...++.++.+|+ +|++.++++
T Consensus       155 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~yd~~~  189 (416)
T 3k5p_A          155 RGKTLGIVGYGNIGSQVGNLAESLGM-TVRYYDTSD  189 (416)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECTTC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCcc
Confidence            57899999999999999999999999 999999764

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=80.81  E-value=2.9  Score=37.22  Aligned_cols=33  Identities=39%  Similarity=0.359  Sum_probs=29.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID  226 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~  226 (239)
                      -+|.+|+|.|.|.+|..+++.+...|+ +|++++
T Consensus       233 l~Gk~vaVQG~GnVG~~aa~~L~e~Ga-kvVavs  265 (450)
T 4fcc_A          233 FEGMRVSVSGSGNVAQYAIEKAMEFGA-RVITAS  265 (450)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             cCCCEEEEeCCChHHHHHHHHHHhcCC-eEEEEe
Confidence            468999999999999999999999999 777665

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=80.78  E-value=2.9  Score=34.68  Aligned_cols=48  Identities=19%  Similarity=0.268  Sum_probs=37.1

Q ss_pred             hhcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          188 NTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       188 ~~~~-~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      .... ++++++||=+|+|. |..+..+++..|. +|++++.+++.++.+++
T Consensus       110 ~~l~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~  158 (312)
T 3vc1_A          110 DHLGQAGPDDTLVDAGCGR-GGSMVMAHRRFGS-RVEGVTLSAAQADFGNR  158 (312)
T ss_dssp             TTSCCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred             HHhccCCCCCEEEEecCCC-CHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence            4444 78899999998754 6666677776687 99999999988877654

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=80.73  E-value=1.9  Score=38.10  Aligned_cols=35  Identities=29%  Similarity=0.363  Sum_probs=29.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEE-EEcCC
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVI-GIDID  228 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv-~~~~~  228 (239)
                      -.|.+|+|.|.|.+|..+++++..+|+ +|+ +.|++
T Consensus       219 l~g~~vaVqG~GnVG~~aa~~l~e~Ga-kVVavsD~~  254 (424)
T 3k92_A          219 LQNARIIIQGFGNAGSFLAKFMHDAGA-KVIGISDAN  254 (424)
T ss_dssp             GGGCEEEEECCSHHHHHHHHHHHHHTC-EEEEEECSS
T ss_pred             cccCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCC
Confidence            367899999999999999999999999 654 66655

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=80.57  E-value=2  Score=39.61  Aligned_cols=35  Identities=26%  Similarity=0.353  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~  228 (239)
                      .+.+|+|+|+|++|..++..+...|+.+++.+|.+
T Consensus       326 ~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D  360 (598)
T 3vh1_A          326 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG  360 (598)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            45799999999999999999999999999999765

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=80.42  E-value=2.1  Score=37.92  Aligned_cols=35  Identities=26%  Similarity=0.331  Sum_probs=30.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      ....|+|+|+|..|+.++..+...|. +|++++.++
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~-~v~vlE~~~   66 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASE   66 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCC-eEEEEECCC
Confidence            45689999999999999999999998 899998764

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=80.41  E-value=1.8  Score=38.18  Aligned_cols=40  Identities=20%  Similarity=0.287  Sum_probs=29.3

Q ss_pred             cCCCCCCEEEEEcC-CHHHHH--HHHHHHHcCCCeEEEEcCChh
Q 026414          190 AKVEPGSIVAVFGL-GTVGLA--VAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       190 ~~~~~g~~vlI~G~-g~~g~~--ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      .....++++||+|+ +++|.+  .+..+...|+ +|++++++.+
T Consensus        55 ~~~~~gK~aLVTGassGIG~A~aia~ala~~Ga-~Vi~~~r~~~   97 (418)
T 4eue_A           55 IGFRGPKKVLIVGASSGFGLATRISVAFGGPEA-HTIGVSYETG   97 (418)
T ss_dssp             CCCCCCSEEEEESCSSHHHHHHHHHHHHSSSCC-EEEEEECCCC
T ss_pred             CcCCCCCEEEEECCCcHHHHHHHHHHHHHhCCC-EEEEEecCcc
Confidence            34577899999988 999998  4444444598 8888877543

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=80.10  E-value=2.4  Score=37.13  Aligned_cols=36  Identities=28%  Similarity=0.413  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      .|.++.|+|.|.+|...++.++.+|. +|++.+++.+
T Consensus       144 ~gktlGiIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~  179 (404)
T 1sc6_A          144 RGKKLGIIGYGHIGTQLGILAESLGM-YVYFYDIENK  179 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEEcCCch
Confidence            67899999999999999999999998 9999987653

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=80.09  E-value=1.8  Score=35.56  Aligned_cols=33  Identities=27%  Similarity=0.317  Sum_probs=27.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCCh
Q 026414          196 SIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDP  229 (239)
Q Consensus       196 ~~vlI~G~g~~g~~ai~~~~~~-G~~~vv~~~~~~  229 (239)
                      -.|+|+|+|..|+.++..+... |. +|++++..+
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~-~V~viEk~~   73 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQSV   73 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTS-CEEEEESSS
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCC-eEEEEECCC
Confidence            3688999999999988887776 98 888888764

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=80.03  E-value=1.8  Score=39.54  Aligned_cols=34  Identities=29%  Similarity=0.374  Sum_probs=28.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      -.|+|+|+|..|++++..+...|. +|+++++.+.
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~~G~-~V~VlEr~~~   83 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRAGGV-GALVLEKLVE   83 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHTTC-CEEEEBSCSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-CEEEEcCCCC
Confidence            358888999999998888888999 8999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	239
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	2e-51
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	3e-49
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	2e-45
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	3e-45
d2jhfa1	198	b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase	1e-43
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	1e-32
d1uufa1	179	b.35.1.2 (A:3-144,A:313-349) Hypothetical protein	1e-23
d1vj0a1	184	b.35.1.2 (A:2-155,A:338-367) Hypothetical protein	3e-23
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	1e-22
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	6e-22
d1d1ta2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	5e-19
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	2e-17
d1jvba1	177	b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase	2e-17
d1e3ia2	174	c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (	3e-17
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	9e-17
d1rjwa1	171	b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase	3e-15
d1p0fa2	174	c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog	3e-15
d1pl8a1	185	b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor	1e-13
d1h2ba1	171	b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenas	1e-13
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	3e-13
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	8e-12
d1jqba1	177	b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secon	2e-11
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	7e-11
d1f8fa2	174	c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {	1e-10
d1yb5a1	150	b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductas	5e-07
d1iz0a1	131	b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase	1e-06
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	8e-06
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	1e-05
d1xa0a1	152	b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homo	2e-05
d1gu7a1	175	b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA redu	6e-05
d1kola2	195	c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps	1e-04
d1mv8a2	202	c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pse	3e-04
d1dlja2	196	c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGD	7e-04
d1qora1	147	b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductas	8e-04

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score =  163 bits (414), Expect = 2e-51
 Identities = 95/200 (47%), Positives = 129/200 (64%), Gaps = 1/200 (0%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           +T G+VI CKAAVAWE NKPLVIE+++V  P A E+RIKI+ T +CHTD Y       + 
Sbjct: 1   ATVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKD 60

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
            FP +LGHE AGIVESVG GVTE QPG+ VIP + ++C EC+FC+S KTN C K   A  
Sbjct: 61  GFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGW-ANE 119

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
           +  +M+ +++RF+  G+ +  F+GTSTFSQYTVV+ ++VAKIDP   LD+       + +
Sbjct: 120 SPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLES 179

Query: 182 GLGAVWNTAKVEPGSIVAVF 201
              A+      +    V   
Sbjct: 180 VNDAIDLMKHGKCIRTVLSL 199

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score =  158 bits (399), Expect = 3e-49
 Identities = 111/196 (56%), Positives = 132/196 (67%), Gaps = 1/196 (0%)

Query: 5   GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFP 64
            +VI CKAAVAWE  KPL IE+++VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP
Sbjct: 2   NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFP 61

Query: 65  CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
            ILGH  AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G 
Sbjct: 62  VILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG- 120

Query: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 184
           +M D  SRF+  GK I H+MGTSTFS+YTVV D+SVAKIDP   +D+             
Sbjct: 121 LMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINK 180

Query: 185 AVWNTAKVEPGSIVAV 200
           A       +    V  
Sbjct: 181 AFELMHSGKSIRTVVK 196

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score =  148 bits (374), Expect = 2e-45
 Identities = 92/208 (44%), Positives = 125/208 (60%), Gaps = 12/208 (5%)

Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
           T G+ ITCKAAVAWEP+KPL +E + VAPP+A EVRIKIL + +C +D+       P   
Sbjct: 2   TAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPSK- 60

Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
           FP ILGHEA G+VES+G GVT V+PGD VIP +  +C  C+ CKS  +N C K       
Sbjct: 61  FPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAK- 119

Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG 182
             +M D  SRF+  GKPIY+ MGTSTF++YTVV D++VAKIDP+  ++ +      +   
Sbjct: 120 TGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKINVNFLVSTKLTL--- 176

Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAV 210
                   ++     +   G G   + +
Sbjct: 177 -------DQINKAFELLSSGQGVRSIMI 197

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score =  148 bits (373), Expect = 3e-45
 Identities = 89/201 (44%), Positives = 126/201 (62%), Gaps = 7/201 (3%)

Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
           T+G+VI CKAA+AW+   PL IE+++V+PP+A EVRI+++ T +C TD         + L
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATD-PKKKAL 60

Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
           FP +LGHE AGIVESVG GVT  +PGD VIP +  +C+ CK C S  TNLCGK+R     
Sbjct: 61  FPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYP 120

Query: 123 GV---MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 179
            +   +M DR SRF+  G+ IYHFMG S+FSQYTVV + ++A++D +  LD +       
Sbjct: 121 TIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLVTHALPF 180

Query: 180 PTGLGAVWNTAKVEPGSIVAV 200
            +   A+     ++ G  +  
Sbjct: 181 ESINDAI---DLMKEGKSIRT 198

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score =  144 bits (363), Expect = 1e-43
 Identities = 97/201 (48%), Positives = 121/201 (60%), Gaps = 5/201 (2%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
             P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  -LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID    LD    L   V  
Sbjct: 120 RGTMQ-DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAFALD---PLITHVLP 175

Query: 182 GLGAVWNTAKVEPGSIVAVFG 202
                     +  G  +    
Sbjct: 176 FEKINEGFDLLRSGESIRTIL 196

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score =  115 bits (289), Expect = 1e-32
 Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 5/194 (2%)

Query: 9   TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILG 68
              AAV         ++ +++  PQ  EV +K++ T +CHTD      K P    P +LG
Sbjct: 3   DIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVP-LPAVLG 61

Query: 69  HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
           HE +GI+E++G  VTE+Q GDHV+  Y   C +C  C +G    C +  G   +G     
Sbjct: 62  HEGSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEG 120

Query: 129 RKSRFSINGK--PIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
                  + +     HF   S+F+ Y +  + +  K+    P D++            A+
Sbjct: 121 N-HALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQLVKFYAFDEINQAAI 179

Query: 187 WNTAKVEPGSIVAV 200
            +   +    I+ +
Sbjct: 180 DSRKGITLKPIIKI 193

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 91.5 bits (226), Expect = 1e-23
 Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 16/177 (9%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KA  A+   +PL   D+    P   +V+I+I +  +CH+D +    +    ++PC+ GHE
Sbjct: 2   KAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHE 61

Query: 71  AAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
             G V +VG+ V +  PGD V + C    C+ C+ C+ G  N C  + G T         
Sbjct: 62  IVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTG-TYNSPT---- 116

Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ-APLDKVCLLGCGVPTGLGA 185
                    P         +SQ  VVH+  V +I      + +   +       L  
Sbjct: 117 ---------PDEPGHTLGGYSQQIVVHERYVLRIRVADIEMIRADQINEAYERMLRG 164

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 90.7 bits (224), Expect = 3e-23
 Identities = 42/200 (21%), Positives = 74/200 (37%), Gaps = 26/200 (13%)

Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           +   A V  + N+PLV ++ +++    G + ++IL   +C +D + + G+DP    P IL
Sbjct: 3   LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIIL 62

Query: 68  GHEAAGIVESVGEGVTEVQPGD-----HVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
           GHE AG V  V     ++          ++      C EC +CK  K       R   G 
Sbjct: 63  GHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYG- 121

Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH-DVSVAKIDPQAPLDKVCLLGCGVPT 181
              +N   S +        H  G   +S + V+  +  V K+  +        L      
Sbjct: 122 ---INRGCSEYP-------HLRG--CYSSHIVLDPETDVLKVSEKITHRLP--LKEAN-- 165

Query: 182 GLGAVWNTAKVEPGSIVAVF 201
                    +      V ++
Sbjct: 166 ---KALELMESREALKVILY 182

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 88.8 bits (219), Expect = 1e-22
 Identities = 53/196 (27%), Positives = 78/196 (39%), Gaps = 30/196 (15%)

Query: 9   TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCIL 67
           T KAAV      PL IE+V+V  P  G+V +KI  + +CHTD +   G  P +   P I 
Sbjct: 5   TMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIP 64

Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE  G V +VG GVT V+ GD V IP     C  C+ C +G   LC             
Sbjct: 65  GHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLC------------- 111

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
                      +    +     +++Y +     V  +    P +    +  G    +  +
Sbjct: 112 ---------ESQQNTGYSVNGGYAEYVLADPNYVGIL----PKNVKATIHPGKLDDINQI 158

Query: 187 WNTAK--VEPGSIVAV 200
            +  +     G IV  
Sbjct: 159 LDQMRAGQIEGRIVLE 174

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.6 bits (216), Expect = 6e-22
 Identities = 30/196 (15%), Positives = 60/196 (30%), Gaps = 20/196 (10%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPP--QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILG 68
           +             +  +  P      ++ IKI    +C +D +  +G       P ++G
Sbjct: 8   EGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVG 67

Query: 69  HEAAGIVESVGEGVTE-VQPGDH-VIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           HE  G V  +G      ++ G    +      C EC  CK+     C             
Sbjct: 68  HEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYC------------- 114

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
              K   + +      ++    ++ Y  VH+  V  I     ++ + +   GV      +
Sbjct: 115 --TKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAFERM 172

Query: 187 WNTAKVEPGSIVAVFG 202
                V     +  + 
Sbjct: 173 -EKGDVRYRFTLVGYD 187

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 79.1 bits (194), Expect = 5e-19
 Identities = 41/71 (57%), Positives = 51/71 (71%)

Query: 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
           AP +KVCL+GCG  TG GA   T KV+PGS   VFGLG VGL+V  G K+AGASR+IGID
Sbjct: 2   APPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGID 61

Query: 227 IDPKKFDREFW 237
           ++  KF++   
Sbjct: 62  LNKDKFEKAMA 72

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 75.4 bits (184), Expect = 2e-17
 Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 26/194 (13%)

Query: 12  AAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG---KDPEGLFPCILG 68
           +AV ++ N  L +E   +  P+  EV +++ +  +C +D + +      D     P ++G
Sbjct: 4   SAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIG 62

Query: 69  HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
           HEA+G V  VG+ V  ++ GD V       CR C+FCK GK NLC               
Sbjct: 63  HEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLC--------------- 107

Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
                  +             ++Y V       K+     + ++      +   + A   
Sbjct: 108 ------PDLTFCATPPDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVDAF-E 160

Query: 189 TAKVEPGSIVAVFG 202
            A+ +  + + V  
Sbjct: 161 AARKKADNTIKVMI 174

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 75.0 bits (183), Expect = 2e-17
 Identities = 38/185 (20%), Positives = 66/185 (35%), Gaps = 31/185 (16%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL-------- 62
           +A    E  KPL ++++ V  P+  +V IK+    +CH+D +   G+             
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61

Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
            P  LGHE AG +E VG+ V     GD V          C +C+ G+ +LC   R     
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPR----- 116

Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS-VAKIDPQAPLDKVCLLGCGVPT 181
                                     +++Y +V     + K+    P+    +       
Sbjct: 117 -----------------WLGINFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANE 159

Query: 182 GLGAV 186
            +  +
Sbjct: 160 AIDNL 164

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 74.2 bits (181), Expect = 3e-17
 Identities = 41/66 (62%), Positives = 49/66 (74%)

Query: 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
           A L++VCL+GCG  +G GA  NTAKV PGS  AVFGLG VGL+   G K AGASR+I ID
Sbjct: 1   ANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAID 60

Query: 227 IDPKKF 232
           I+ +KF
Sbjct: 61  INGEKF 66

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 73.8 bits (180), Expect = 9e-17
 Identities = 41/218 (18%), Positives = 73/218 (33%), Gaps = 28/218 (12%)

Query: 11  KAAVAWEPNKPLVIEDVQV-------APPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF 63
           +  V     K + ++ +                V +K++ T +C +D +   G       
Sbjct: 3   RGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRG-RTTAQV 60

Query: 64  PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAG 123
             +LGHE  G V   G  V  +Q GD V   +   C  C+ CK   T +C  V  A   G
Sbjct: 61  GLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGG 120

Query: 124 VMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPT 181
                    ++               ++Y +V   D ++ K+  +    +   +   V  
Sbjct: 121 AYGYVDMGDWTG------------GQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGV 168

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA 219
            + ++ + A    G     F  G     V +  K   A
Sbjct: 169 QVISLDD-APRGYG----EFDAGVPKKFVIDPHKTFSA 201

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 69.2 bits (168), Expect = 3e-15
 Identities = 50/196 (25%), Positives = 75/196 (38%), Gaps = 32/196 (16%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL-GH 69
           KAAV  +  +PL I++V+      GEV ++I    +CHTD +   G  P      ++ GH
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61

Query: 70  EAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
           E  GIVE VG GVT ++ GD V IP   + C  C +C SG+  LC               
Sbjct: 62  EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLC--------------- 106

Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL--LGCGVPTGLGAV 186
                    +    +     +++Y       V KI     ++   L  +       L   
Sbjct: 107 -------EHQKNAGYSVDGGYAEYCRAAADYVVKIPDNTIIEVQPLEKINEVFDRMLKGQ 159

Query: 187 WNTAKVEPGSIVAVFG 202
                   G +V    
Sbjct: 160 I------NGRVVLTLE 169

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 69.1 bits (168), Expect = 3e-15
 Identities = 40/68 (58%), Positives = 46/68 (67%), Gaps = 1/68 (1%)

Query: 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
           APL+  CL+GCG  TG GA  NTAKV PGS  AVFGLG VG +   G KAAGASR+IG+ 
Sbjct: 1   APLES-CLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVG 59

Query: 227 IDPKKFDR 234
               KF +
Sbjct: 60  THKDKFPK 67

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (157), Expect = 1e-13
 Identities = 38/193 (19%), Positives = 62/193 (32%), Gaps = 28/193 (14%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL---FPCIL 67
            + V   P   L +E+  +  P   EV +++    +C +D + W            P +L
Sbjct: 9   LSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVL 67

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           GHEA+G VE VG  V  ++PGD V     A     +FCK G+ NL   +          N
Sbjct: 68  GHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGN 127

Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
                                  ++   +     K+                       +
Sbjct: 128 ---------------------LCRFYKHNAAFCYKLPDNVKPLVTHRFPLEKAL---EAF 163

Query: 188 NTAKVEPGSIVAV 200
            T K   G  + +
Sbjct: 164 ETFKKGLGLKIML 176

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 64.3 bits (155), Expect = 1e-13
 Identities = 47/194 (24%), Positives = 68/194 (35%), Gaps = 28/194 (14%)

Query: 11  KAAVAWEPNKPLVIEDVQV-APPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFP---CI 66
           KAA   E NKPL IEDV         +V ++I    +CHTD +   G   E L P     
Sbjct: 1   KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYT 60

Query: 67  LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           LGHE  G +E V EGV  ++ GD VI         C  C++G+   C  +          
Sbjct: 61  LGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLE--------- 111

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
                                 F+++      SV K+     ++        +   L  +
Sbjct: 112 -------------FPGLNIDGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERL 158

Query: 187 WNTAKVEPGSIVAV 200
                   G  V +
Sbjct: 159 EKGEV--LGRAVLI 170

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 63.9 bits (154), Expect = 3e-13
 Identities = 40/67 (59%), Positives = 49/67 (73%)

Query: 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
           +PL+KVCL+GCG  TG G+    AKV  GS  AVFGLG VGL+V  G KAAGA+R+IG+D
Sbjct: 1   SPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVD 60

Query: 227 IDPKKFD 233
           I+  KF 
Sbjct: 61  INKDKFA 67

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 8e-12
 Identities = 48/67 (71%), Positives = 54/67 (80%)

Query: 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
           APLDKVCLLGCG+ TG GA  NTAK+EPGS+ AVFGLG VGLAV  G K AGASR+IG+D
Sbjct: 1   APLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVD 60

Query: 227 IDPKKFD 233
           I+  KF 
Sbjct: 61  INKDKFA 67

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 58.8 bits (141), Expect = 2e-11
 Identities = 35/203 (17%), Positives = 60/203 (29%), Gaps = 33/203 (16%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           K       NK L   + +     + +  ++ L  + C +D +T            ILGHE
Sbjct: 2   KGFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHE 60

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
           A G V  VG  V + +PGD VI             ++G                      
Sbjct: 61  AVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNG--------------- 105

Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
               +     +       F +Y  V+  D+++A +     L K+         G   +  
Sbjct: 106 ----MLAGWKFSNFKDGVFGEYFHVNDADMNLAILPKDVDLSKLVTHVY---HGFDHIEE 158

Query: 189 TAKVEPGSIVAVFGLGTVGLAVA 211
                    + +       L  A
Sbjct: 159 A--------LLLMKDKPKDLIKA 173

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 57.0 bits (136), Expect = 7e-11
 Identities = 45/71 (63%), Positives = 52/71 (73%)

Query: 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
           APLD VCLLGCGV TG GA  NTAKVEPGS  AVFGLG VGLA   G  +AGA R+I +D
Sbjct: 1   APLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVD 60

Query: 227 IDPKKFDREFW 237
           ++P KF++   
Sbjct: 61  LNPDKFEKAKV 71

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 56.4 bits (135), Expect = 1e-10
 Identities = 27/66 (40%), Positives = 37/66 (56%)

Query: 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227
           P++ +  LGCG+ TG GA  N  KV P S    +G G VGL+    AK  GAS +I +DI
Sbjct: 2   PIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI 61

Query: 228 DPKKFD 233
              + +
Sbjct: 62  VESRLE 67

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 5e-07
 Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 4/99 (4%)

Query: 11  KAAVAWEPNKPLVIE---DVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCI 66
           +A   +E   P V++   D+ V  P+  +V IK+    +   + Y  SG    + L P  
Sbjct: 4   RAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYT 63

Query: 67  LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFC 105
            G + AG++E+VG+  +  + GD V           ++ 
Sbjct: 64  PGSDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYA 102

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 131

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 44.0 bits (103), Expect = 1e-06
 Identities = 14/59 (23%), Positives = 21/59 (35%)

Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH 69
          KA V      PL + D+     + GEV +++    L   D     G     L P  +  
Sbjct: 2  KAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPG 60

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 42.6 bits (99), Expect = 8e-06
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLA 209
           PL+   ++   + TG       A +E GS V V G+G VGL 
Sbjct: 2   PLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLM 42

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.2 bits (98), Expect = 1e-05
 Identities = 10/39 (25%), Positives = 15/39 (38%)

Query: 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVG 207
           LD + +  C   T   A     +   G  V + G G +G
Sbjct: 3   LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLG 41

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 152

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 10/93 (10%), Positives = 26/93 (27%), Gaps = 3/93 (3%)

Query: 9  TCKAAVAWEPNKPLV--IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCI 66
            +A V  +        ++ + +     G+V +++ ++++ + D                
Sbjct: 3  AFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKT-YP 61

Query: 67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAEC 99
                     V       + GD VI       
Sbjct: 62 FVPGIDLAGVVVSSQHPRFREGDEVIATGYEIG 94

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 40.1 bits (92), Expect = 6e-05
 Identities = 16/104 (15%), Positives = 30/104 (28%), Gaps = 5/104 (4%)

Query: 7   VITCKAAVAWEPNKP-----LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           +IT +A +  +  +P         ++        EV +K L + +  +D     G  P  
Sbjct: 1   MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSK 60

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFC 105
                             EG+ EV      +   +A        
Sbjct: 61  PAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSH 104

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGA 214
           +  +  L   +PTG       A V PGS V V G G VGLA A  A
Sbjct: 1   IRDLTCLSDILPTGYHGAVT-AGVGPGSTVYVAGAGPVGLAAAASA 45

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 202

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWSY 239
           +++FGLG VG   A    A G   VIG+D+   K D      
Sbjct: 3   ISIFGLGYVGAVCAGCLSARG-HEVIGVDVSSTKIDLINQGK 43

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} Length = 196

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 37.3 bits (85), Expect = 7e-04
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           +AV G G VGL++      +  + V  +DI P K D+
Sbjct: 3   IAVAGSGYVGLSLG--VLLSLQNEVTIVDILPSKVDK 37

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 147

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 36.5 bits (83), Expect = 8e-04
 Identities = 26/84 (30%), Positives = 35/84 (41%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81
           L   +   A P   E++++     +   D Y  SG  P    P  LG EAAGIV  VG G
Sbjct: 15  LQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSG 74

Query: 82  VTEVQPGDHVIPCYQAECRECKFC 105
           V  ++ GD V+    A        
Sbjct: 75  VKHIKAGDRVVYAQSALGAYSSVH 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	239
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	100.0
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	100.0
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	100.0
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	100.0
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	100.0
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	100.0
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	100.0
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	100.0
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	100.0
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	100.0
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	100.0
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	100.0
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	100.0
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	100.0
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	100.0
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	100.0
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	99.98
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.97
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.96
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.95
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.95
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.92
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.92
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	99.91
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	99.63
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.63
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.45
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.44
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.44
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.43
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.4
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.38
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.37
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.37
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.35
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.34
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.34
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.32
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.32
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.32
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.3
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.29
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.27
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.25
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.23
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.21
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.2
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.19
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.18
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.15
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.13
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.12
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.04
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	98.97
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	98.75
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.08
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.04
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.97
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.69
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.54
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	95.98
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.87
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	95.83
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	95.83
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	95.61
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	95.53
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.01
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	94.82
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	94.43
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	94.29
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.28
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	93.84
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	93.76
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	93.45
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	93.45
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	93.33
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	93.28
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	93.11
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	92.76
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	92.74
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	92.63
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	92.51
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.26
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	92.01
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	91.96
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	91.92
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	91.53
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	91.49
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	91.48
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	91.47
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	91.46
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	91.3
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	91.1
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	91.1
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	91.02
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	90.9
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	90.82
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	90.17
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	89.68
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	89.54
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	89.36
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	89.32
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	89.09
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	89.02
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	88.98
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	88.51
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	88.45
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	88.29
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	87.75
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	87.22
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	87.2
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	86.66
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	86.48
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	85.47
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	85.36
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	85.24
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	84.89
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	84.79
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	84.26
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	84.08
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	83.99
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	83.66
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	83.34
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	83.07
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	82.69
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	82.64
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	82.61
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	82.0
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	81.48
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	81.44
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	81.34
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	81.01
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	80.94
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	80.25
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	80.15

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=100.00  E-value=3.3e-40  Score=266.72  Aligned_cols=198  Identities=48%  Similarity=0.776  Sum_probs=183.1

Q ss_pred             CCCcccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCC
Q 026414            3 TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV   82 (239)
Q Consensus         3 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v   82 (239)
                      +...++++||+++++.+++++++|++.|+|++||||||++++|||++|++.+.+......+|.++|||++|+|+++|+++
T Consensus         2 ~~~~~~~~kAav~~~~~~pl~i~ev~~P~p~~~eVlIkv~a~giCgsD~~~~~g~~~~~~~p~i~GhE~~G~v~~vG~~v   81 (199)
T d1cdoa1           2 TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLGHEGAGIVESVGPGV   81 (199)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCTTSCSEECCCCEEEEEEEECTTC
T ss_pred             CCCCceEEEEEEEecCCCCcEEEEEECCCCCCCEEEEEEEEEEEecchhhhhhhcccccccccccccccceEEEEEcCCC
Confidence            34678899999999999999999999999999999999999999999999999977767899999999999999999999


Q ss_pred             CCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEe
Q 026414           83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK  162 (239)
Q Consensus        83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  162 (239)
                      ++|++||||++.+...|++|.+|+.++.+.|.+.......+.. .++..+...+|...++....|+|+||++++++.+++
T Consensus        82 ~~~~~GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~Ggfaey~~v~~~~~~~  160 (199)
T d1cdoa1          82 TEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVM-SPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAK  160 (199)
T ss_dssp             CSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTT-SCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEE
T ss_pred             ceecCCCEEEEeeeccccccccccCCCcccccccccccccccc-cCcccceeeccceeecccccCCceEEEEEchHHEEE
Confidence            9999999999999999999999999999999987655455554 777788888999999999999999999999999999


Q ss_pred             cCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEE
Q 026414          163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF  201 (239)
Q Consensus       163 ~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~  201 (239)
                      +|+++++++++++.+++.|+++++......+.|++|||+
T Consensus       161 iP~~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~  199 (199)
T d1cdoa1         161 IDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  199 (199)
T ss_dssp             CCTTSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence            999999999999999999999999888889999999984

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=100.00  E-value=1.6e-38  Score=256.26  Aligned_cols=196  Identities=57%  Similarity=0.886  Sum_probs=175.9

Q ss_pred             CcccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCC
Q 026414            5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE   84 (239)
Q Consensus         5 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~   84 (239)
                      +..++|||+++++++++|+++|+|.|+|+++||||||+++|||++|+++++|.+....+|.++|||++|+|+++|++++.
T Consensus         2 ~~~~~~kAav~~~~g~~l~i~evp~P~p~~~eVLVkv~a~gic~sD~~~~~G~~~~~~~p~v~GhE~~G~V~~vG~~V~~   81 (197)
T d2fzwa1           2 NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVTK   81 (197)
T ss_dssp             CCCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             CCceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEecCCCCcHHHHcCCcccccccccCCcceeeEEEeecCCcee
Confidence            45688999999999999999999999999999999999999999999999998777789999999999999999999999


Q ss_pred             CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (239)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p  164 (239)
                      +++||+|++.+...|+.|..|..++...|.+.......|.. .+...+...+|..++++++.|+|+||+++|+.+++++|
T Consensus        82 ~~~GdrV~v~~~~~cg~c~~c~~g~~~~C~~~~~~~~~~~~-~~~~~~~~~~g~~v~~~~g~GgfAey~vvp~~~~~~vp  160 (197)
T d2fzwa1          82 LKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLM-PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKID  160 (197)
T ss_dssp             CCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCC-TTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECC
T ss_pred             cCCCCEEEEccccccccccccccCccccCcccccccccccc-CCccceeccCCcceecccccccceeEEEechHHEEECC
Confidence            99999999999999999999999999999976554334444 55556667788889999988999999999999999999


Q ss_pred             CCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEE
Q 026414          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF  201 (239)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~  201 (239)
                      +++++++++.+.+++.|++.++.....-+.+++|||+
T Consensus       161 ~~l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi  197 (197)
T d2fzwa1         161 PLIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  197 (197)
T ss_dssp             TTSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             CCCCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence            9999999999999999999877555556788999884

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=100.00  E-value=2.9e-37  Score=249.88  Aligned_cols=194  Identities=46%  Similarity=0.831  Sum_probs=169.4

Q ss_pred             CCcccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCC
Q 026414            4 EGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT   83 (239)
Q Consensus         4 ~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~   83 (239)
                      ...++||||+++++++++++++|+|.|+|+++||||||++++||++|++++.|.++. .+|.++|||++|+|+++|++++
T Consensus         3 ~~~~~~~KAaV~~~~g~pl~i~evp~P~p~~geVlVkv~a~gic~sD~~~~~G~~~~-~~P~v~GHE~~G~V~~vG~~V~   81 (202)
T d1e3ia1           3 QGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKA-LFPVVLGHECAGIVESVGPGVT   81 (202)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTTSCC-CSSBCCCCEEEEEEEEECTTCC
T ss_pred             CCCeEEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEeccccceeeeeccc-ccccccccccceEEeeecCCce
Confidence            356799999999999999999999999999999999999999999999999987654 6899999999999999999999


Q ss_pred             CCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCC---CCceeccCCccccccCCcceeeecCCcceeeeEEEeccee
Q 026414           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT---GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV  160 (239)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~---~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  160 (239)
                      ++++||||++.+...|+.|.+|..++.+.|.+.....   ..+....++..+++.+|...+++.+.|+|+||+++++..+
T Consensus        82 ~~~~GdrV~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~G~faey~~v~~~~l  161 (202)
T d1e3ia1          82 NFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANL  161 (202)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGE
T ss_pred             eccCCCEEEEEeeccccccccccCCcccccccccccccCccceecccccccccccCceeeecccccCCceEEEEEehhhE
Confidence            9999999999999999999999999999999765431   1222234556667778899999999999999999999999


Q ss_pred             EecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEE
Q 026414          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF  201 (239)
Q Consensus       161 ~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~  201 (239)
                      +++|++++++.++.+.+++.+.+.++ .  .+|+|++|.|+
T Consensus       162 ~~lP~~~~~~~~~~~~~~~~~~~~a~-~--~~k~G~~V~vi  199 (202)
T d1e3ia1         162 ARVDDEFDLDLLVTHALPFESINDAI-D--LMKEGKSIRTI  199 (202)
T ss_dssp             EECCTTSCGGGGEEEEEEGGGHHHHH-H--HHHTTCCSEEE
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHH-H--hCCCCCEEEEE
Confidence            99999999998888888877777655 2  25789998775

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=100.00  E-value=1.6e-36  Score=243.91  Aligned_cols=190  Identities=28%  Similarity=0.521  Sum_probs=157.0

Q ss_pred             cceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCC
Q 026414            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (239)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~   87 (239)
                      ++|+|+++.+.+++|+++++|.|+|++||||||+.+++||++|++++.|.++. ++|.++|||++|+|+++|+++++|++
T Consensus         2 k~~~Aav~~~~g~~l~l~~v~~P~p~~geVlVkv~a~gic~sD~~~~~G~~~~-~~P~i~GHE~~G~V~~vG~~v~~~~v   80 (194)
T d1f8fa1           2 KDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPV-PLPAVLGHEGSGIIEAIGPNVTELQV   80 (194)
T ss_dssp             EEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC-CSSBCCCCEEEEEEEEECTTCCSCCT
T ss_pred             ceeEEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEEecCchHhhhhhcccc-cCCcccccceEEEeeecCccceeEcc
Confidence            58999999999999999999999999999999999999999999999998764 68999999999999999999999999


Q ss_pred             CCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCcccccc--CCcceeeecCCcceeeeEEEecceeEecCC
Q 026414           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSI--NGKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (239)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~  165 (239)
                      ||||+. ++.+|++|.+|++++++.|.+.......|.. .+|......  .+....+++..|+|+||.+++..+++++|+
T Consensus        81 GDrVv~-~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~-~dg~~~~~~~~~~~~~~~~~~~g~fae~~~v~~~~~~~ip~  158 (194)
T d1f8fa1          81 GDHVVL-SYGYCGKCTQCNTGNPAYCSEFFGRNFSGAD-SEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTK  158 (194)
T ss_dssp             TCEEEE-CCCCCSSSHHHHTTCGGGCTTHHHHSSSSSC-SSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEECT
T ss_pred             Cceeee-ecccccCChhhhCCCcccccccccceecccc-ccceeeeecCCceeeccccccccccceeEEEehHHEEECCC
Confidence            999955 5568999999999999999975333333333 344322221  234445566778999999999999999999


Q ss_pred             CCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 026414          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI  225 (239)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~  225 (239)
                      +++++++                         +++.|+|.+|++|+|+++.+|+.+|+++
T Consensus       159 ~i~~~~~-------------------------~~i~g~g~~g~~aiq~a~~~g~~~iiaV  193 (194)
T d1f8fa1         159 DFPFDQL-------------------------VKFYAFDEINQAAIDSRKGITLKPIIKI  193 (194)
T ss_dssp             TCCGGGG-------------------------EEEEEGGGHHHHHHHHHHTSCSEEEEEC
T ss_pred             CCCcccE-------------------------EEEeCcHHHHHHHHHHHHHcCCCEEEEe
Confidence            8876543                         3456889999999999999999677665

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=100.00  E-value=1.1e-37  Score=251.49  Aligned_cols=192  Identities=48%  Similarity=0.833  Sum_probs=166.0

Q ss_pred             CcccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCC
Q 026414            5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE   84 (239)
Q Consensus         5 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~   84 (239)
                      .+..||||+++++++++|+++|+|.|+|+++||||||.+++||++|++++.|.++. .+|.++|||++|+|+++|+++++
T Consensus         4 ~~~~~~KAav~~~~g~~l~i~ev~~P~p~~~eVlVkv~a~gICgsDlh~~~G~~~~-~~P~i~GHE~~G~Vv~~G~~v~~   82 (198)
T d1p0fa1           4 GKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPS-KFPVILGHEAVGVVESIGAGVTC   82 (198)
T ss_dssp             TSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC-CSSBCCCCCEEEEEEEECTTCCS
T ss_pred             CCceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEecccceeeeecccc-ccccccceeeeeeeeecCccccc
Confidence            45679999999999999999999999999999999999999999999999987754 78999999999999999999999


Q ss_pred             CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (239)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p  164 (239)
                      +++||||++.+..+|+.|.+|++++.+.|++.......|.. .++..++...++..+.....++|+||..+++.+++++|
T Consensus        83 ~~~GdrV~~~~~~~Cg~c~~c~~g~~~~C~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~g~faey~~v~~~~~~kip  161 (198)
T d1p0fa1          83 VKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLM-ADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKID  161 (198)
T ss_dssp             CCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSC-TTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEEEEC
T ss_pred             CcCCCEEEEEeeccccccccccccccccchhhhcccccccc-CCCceeEeeCCeeccccCCCccceeeEEecHHHEEECC
Confidence            99999999999999999999999999999987766555554 56667777788888888889999999999999999999


Q ss_pred             CCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHH
Q 026414          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGL  208 (239)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~  208 (239)
                      ++++.+.++...+.+.          .+++++.|||.|+|++|+
T Consensus       162 ~~~~~~~~~~~~~~~~----------~v~~~~~vlv~G~G~iGl  195 (198)
T d1p0fa1         162 PKINVNFLVSTKLTLD----------QINKAFELLSSGQGVRSI  195 (198)
T ss_dssp             TTSCGGGGEEEEECGG----------GHHHHHHHTTTSSCSEEE
T ss_pred             CCCCHHHHHHhhcchh----------hcCCCCEEEEECCCcceE
Confidence            9998766554433322          233445688888888775

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=100.00  E-value=1e-36  Score=241.88  Aligned_cols=171  Identities=23%  Similarity=0.406  Sum_probs=151.0

Q ss_pred             ceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCC---CCCCCCeeeeeeEEEEEEEeCCCCCCC
Q 026414            9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---PEGLFPCILGHEAAGIVESVGEGVTEV   85 (239)
Q Consensus         9 ~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~~~~p~~~G~e~vG~Vv~vG~~v~~~   85 (239)
                      .|+|+ ++++++ |+++|+|.|+|+++|||||+++++||++|++.+.+..   ...++|.++|||++|+|+++|+++++|
T Consensus         2 ~maAV-l~g~~~-l~~~e~~~P~~~~~evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v~~~   79 (178)
T d1e3ja1           2 NLSAV-LYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHL   79 (178)
T ss_dssp             CEEEE-EEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSC
T ss_pred             ceEEE-EEcCCc-EEEEEeECCCCCCCEEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecCcccCCC
Confidence            35555 567777 9999999999999999999999999999999887643   223678999999999999999999999


Q ss_pred             CCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCC
Q 026414           86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (239)
Q Consensus        86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~  165 (239)
                      ++||||++.+...|+.|.+|..++.+.|.+....   |....+|                  +|+||+++|.++++++|+
T Consensus        80 ~~GdrV~~~~~~~~~~c~~c~~g~~~~c~~~~~~---~~~~~~G------------------~~aey~~v~~~~~~~iP~  138 (178)
T d1e3ja1          80 KKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFC---ATPPDDG------------------NLARYYVHAADFCHKLPD  138 (178)
T ss_dssp             CTTCEEEECCEECCSSSHHHHTTCGGGCTTCEET---TBTTBCC------------------SCBSEEEEEGGGEEECCT
T ss_pred             CCCCEEEECcccccCCccccccCCccccccccce---ecccccc------------------ccceeeeecccceeeCCC
Confidence            9999999999999999999999999999876653   2222344                  999999999999999999


Q ss_pred             CCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC
Q 026414          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL  203 (239)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~  203 (239)
                      ++++++++.+.+++.|+|+++ +..++++|++|+|+|+
T Consensus       139 ~~~~~~aa~~~~~~~ta~~a~-~~~~~~~g~~VlVig~  175 (178)
T d1e3ja1         139 NCNVKQLVTHSFKLEQTVDAF-EAARKKADNTIKVMIS  175 (178)
T ss_dssp             TCCCGGGEEEEEEGGGHHHHH-HHHHHCCTTCSEEEEE
T ss_pred             CCCHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEEcc
Confidence            999999999999999999976 7889999999999975

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=100.00  E-value=1.3e-35  Score=239.43  Aligned_cols=195  Identities=49%  Similarity=0.771  Sum_probs=167.5

Q ss_pred             CCCCcccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCC
Q 026414            2 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG   81 (239)
Q Consensus         2 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~   81 (239)
                      |+...+++|||+++++++++++++|++.|+|+++||||||.++|||++|++++.|.++. .+|.++|||++|+|+++|++
T Consensus         1 ~~~~~~~k~KAavl~~~~~~l~i~ev~~P~p~~~eVlVkV~a~giC~sDl~~~~G~~~~-~~P~i~GHE~~G~Vv~vG~~   79 (198)
T d2jhfa1           1 STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT-PLPVIAGHEAAGIVESIGEG   79 (198)
T ss_dssp             CCTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-CSSBCCCCSEEEEEEEECTT
T ss_pred             CCCCCceEEEEEEEecCCCCCEEEEEECCCCCCCEEEEEEEEEecccccceeecCCccc-ccceecccceeEEEEecCcc
Confidence            34567899999999999999999999999999999999999999999999999998664 68999999999999999999


Q ss_pred             CCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeE
Q 026414           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA  161 (239)
Q Consensus        82 v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  161 (239)
                      ++++++||||++.+...|+.|.+|..+....|.+.......|.. .++...+..+|..+++++..|+|+||+++|..+++
T Consensus        80 v~~~~vGdrV~v~~~~~c~~c~~c~~g~~~~C~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~G~fAEy~~v~~~~~~  158 (198)
T d2jhfa1          80 VTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVA  158 (198)
T ss_dssp             CCSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSC-TTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEE
T ss_pred             ccCcCCCCEEEEeeeecccccccccCCccceeccccccccCccc-cCccccccccCceeccCCCCCcccCeEEeCHHHeE
Confidence            99999999999999999999999999999999988776666655 66667777889999999999999999999999999


Q ss_pred             ecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEE
Q 026414          162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF  201 (239)
Q Consensus       162 ~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~  201 (239)
                      ++|++++++.++...+++.+...   ....+++|++|+|+
T Consensus       159 ~~p~~~~~e~l~~~~~~~~~v~~---g~~~l~~G~~VaVi  195 (198)
T d2jhfa1         159 KIDAAFALDPLITHVLPFEKINE---GFDLLRSGESIRTI  195 (198)
T ss_dssp             ECCTTSCCGGGEEEEEEGGGHHH---HHHHHHTTCCSEEE
T ss_pred             ECCCCCCHHHHHHHHHHHHhhhh---CCceeeCCCEEEEE
Confidence            99999887655544333322211   12336788998875

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=6e-36  Score=236.80  Aligned_cols=173  Identities=30%  Similarity=0.404  Sum_probs=152.3

Q ss_pred             CcccceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCC
Q 026414            5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVT   83 (239)
Q Consensus         5 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~   83 (239)
                      +.|.||||+++++++++++++|+|.|.|++||||||+++++||++|++.+.|.++. ..+|.++|||++|+|+++|++++
T Consensus         1 ~~P~tMkA~v~~~~g~pl~l~evp~P~~~~~evlVkv~a~gic~~D~~~~~G~~~~~~~~P~i~GhE~~G~V~~~G~~v~   80 (175)
T d1llua1           1 TLPQTMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAVGSGVT   80 (175)
T ss_dssp             CCCSEEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCC
T ss_pred             CcchhcEEEEEEeCCCCCEEEEeECCCCCCCEEEEEEEEecCcccchhhhccCccccccCCcCCCCcceEEEEEeCCCcc
Confidence            36899999999999999999999999999999999999999999999999998753 47899999999999999999999


Q ss_pred             CCCCCCEEeecC-ccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEe
Q 026414           84 EVQPGDHVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK  162 (239)
Q Consensus        84 ~~~~Gd~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  162 (239)
                      +|++||||.+.+ ...|+.|.+|..++.+.|.+...   .|.. .+|                  +|+||+.++.+++++
T Consensus        81 ~~~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~---~G~~-~~g------------------g~aey~~v~~~~~~~  138 (175)
T d1llua1          81 RVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQN---TGYS-VNG------------------GYAEYVLADPNYVGI  138 (175)
T ss_dssp             SCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEE---BTTT-BCC------------------SSBSEEEECTTTSEE
T ss_pred             ccccCCEEEeccccccCCccccccCCcccccccccc---cccc-ccc------------------ccceEEEechHHEEE
Confidence            999999998765 55799999999999999987664   3433 444                  899999999999999


Q ss_pred             cCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEE
Q 026414          163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF  201 (239)
Q Consensus       163 ~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~  201 (239)
                      +|++++++.++.+..++.|+++++ + ....+|++|||+
T Consensus       139 iPd~l~~~~a~~~~~~~~t~~~~~-~-~g~~~G~~VLVl  175 (175)
T d1llua1         139 LPKNVKATIHPGKLDDINQILDQM-R-AGQIEGRIVLEM  175 (175)
T ss_dssp             CCTTCCCCEEEECGGGHHHHHHHH-H-TTCCSSEEEEEC
T ss_pred             CCCCCChhHHHHHHhHHHHHHHHH-H-hCCCCCCEEEeC
Confidence            999999988888888888888755 3 344579999984

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=3.4e-35  Score=231.73  Aligned_cols=166  Identities=29%  Similarity=0.371  Sum_probs=150.0

Q ss_pred             eEEEEecCCCCeEEEeecCCCC-CCCeEEEEEeEeeechhhhhhhcCCCC---CCCCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414           11 KAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTEVQ   86 (239)
Q Consensus        11 ~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~vG~Vv~vG~~v~~~~   86 (239)
                      ||+++++.++||+++|++.|++ ++||||||+++++||++|++.+.|...   ...+|.++|||++|+|+++|+++++++
T Consensus         1 kA~~~~~~g~pl~i~~v~~P~~~~~~eVlVkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~vG~~v~~~~   80 (171)
T d1h2ba1           1 KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLE   80 (171)
T ss_dssp             CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCCSCC
T ss_pred             CEEEEEeCCCCCEEEEeeCCCCCCCCEEEEEEEecccceeeehccCCCcccccCCccccccceeeeeeeecccCCCCcCC
Confidence            7999999999999999999986 689999999999999999999888652   236899999999999999999999999


Q ss_pred             CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (239)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~  166 (239)
                      +||||++.+...|+.|..|..++.++|.+...   .|+. .+|                  +|+||+.++.+.++++|++
T Consensus        81 ~GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~iP~~  138 (171)
T d1h2ba1          81 KGDPVILHPAVTDGTCLACRAGEDMHCENLEF---PGLN-IDG------------------GFAEFMRTSHRSVIKLPKD  138 (171)
T ss_dssp             TTCEEEECSCBCCSCSHHHHTTCGGGCTTCBC---BTTT-BCC------------------SSBSEEEECGGGEEECCTT
T ss_pred             CCCEEEEcCccCCCCccccccccccccccccc---ceee-ccc------------------ccceeeeehhhcceecCCC
Confidence            99999999999999999999999999987654   3443 455                  9999999999999999999


Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEE
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAV  200 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI  200 (239)
                      ++++.++++.++++|+|+++ +...+ .|++|||
T Consensus       139 ~~~e~aa~~~~~~~ta~~al-~~~~~-~G~~VlI  170 (171)
T d1h2ba1         139 VRVEVDIHKLDEINDVLERL-EKGEV-LGRAVLI  170 (171)
T ss_dssp             CCCCEEEEEGGGHHHHHHHH-HTTCC-SSEEEEE
T ss_pred             CCHHHHHHHHhHHHHHHHHH-HhcCC-CCCEEEe
Confidence            99988888888999999977 56777 8999998

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-35  Score=232.42  Aligned_cols=171  Identities=23%  Similarity=0.299  Sum_probs=147.6

Q ss_pred             cceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCC---CCCCCCeeeeeeEEEEEEEeCCCCCC
Q 026414            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---PEGLFPCILGHEAAGIVESVGEGVTE   84 (239)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~~~~p~~~G~e~vG~Vv~vG~~v~~   84 (239)
                      ..++|++++++++ |+++|+|.|+|+++||||||++++||++|++.+.+..   ...++|.++|||++|+|+++|+++++
T Consensus         6 p~~~a~V~~gp~~-l~l~evp~P~p~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~   84 (185)
T d1pl8a1           6 PNNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKH   84 (185)
T ss_dssp             CCCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCS
T ss_pred             CCCEEEEEeCCCe-EEEEEeECCCCCCCEEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEeccceee
Confidence            4778999999988 9999999999999999999999999999999987542   12367899999999999999999999


Q ss_pred             CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (239)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p  164 (239)
                      |++||||++.+...|+.|.+|..++.+.|.+...   .|....+|                  +|+||++++.++++++|
T Consensus        85 ~~~GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~---~g~~~~~G------------------~~aey~~~~~~~~~~lP  143 (185)
T d1pl8a1          85 LKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFF---CATPPDDG------------------NLCRFYKHNAAFCYKLP  143 (185)
T ss_dssp             CCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEE---TTBTTBCC------------------SCBSEEEEEGGGEEECC
T ss_pred             ecccccceecceeccccchhhccchhchhcccee---eecccccc------------------cceEEEEEchHHEEECC
Confidence            9999999999999999999999999999987654   23322344                  89999999999999999


Q ss_pred             CCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCC
Q 026414          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLG  204 (239)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g  204 (239)
                      +++++++++.++  +.++++++ +..++++|++||| |+|
T Consensus       144 ~~~~~~~aa~~p--l~~a~~a~-~~~~~~~G~~VlI-g~G  179 (185)
T d1pl8a1         144 DNVKPLVTHRFP--LEKALEAF-ETFKKGLGLKIML-KCD  179 (185)
T ss_dssp             TTCGGGEEEEEE--GGGHHHHH-HHHHTTCCSEEEE-ECC
T ss_pred             CCCCHHHHHHHH--HHHHHHHH-HHhCCCCCCEEEE-EeC
Confidence            999999887654  45677754 6778899999998 444

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-34  Score=231.91  Aligned_cols=181  Identities=18%  Similarity=0.244  Sum_probs=152.0

Q ss_pred             CcccceeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCC
Q 026414            5 GQVITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV   82 (239)
Q Consensus         5 ~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v   82 (239)
                      +.|.+|||+++..+++.  +++.+++.++++++|||||++++|||++|++++.|.++..++|.++|||++|+|+++|+++
T Consensus         2 ~~P~~~ka~~~~~~~~~~~~~~~~~~p~p~~~~eVlVkv~a~giC~sDl~~~~g~~~~~~~P~i~GHE~~G~Vv~vG~~v   81 (192)
T d1piwa1           2 SYPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKS   81 (192)
T ss_dssp             CTTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECTTC
T ss_pred             CCCceeEEEEEeCCCcCCcceEeeccCCCCCCCeEEEEEeeeCCCcchHHHHcCCCCCCCCCcCcccccccchhhccccc
Confidence            57899999999888764  7888888777899999999999999999999999987777899999999999999999998


Q ss_pred             -CCCCCCCEEeecCc-cCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEeccee
Q 026414           83 -TEVQPGDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV  160 (239)
Q Consensus        83 -~~~~~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  160 (239)
                       +.+++||||.+.+. ..|+.|.+|+.++.+.|.+.........  .+|             ....|+|+||++++++.+
T Consensus        82 ~~~~k~GdrV~~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~--~~G-------------~~~~Ggfaey~~v~~~~~  146 (192)
T d1piwa1          82 NSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPY--EDG-------------YVSQGGYANYVRVHEHFV  146 (192)
T ss_dssp             CSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBC--TTS-------------CBCCCSSBSEEEEEGGGE
T ss_pred             ccccCCCCeeeEeeeccCCCCchhhhcCCccccccccccccccc--ccc-------------cccccceeeEEEeehHHe
Confidence             56999999987764 4799999999999999997654321100  111             222349999999999999


Q ss_pred             EecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEE
Q 026414          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF  201 (239)
Q Consensus       161 ~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~  201 (239)
                      +++|+++++++|+.+...+.|||+++ .+++++++++|||.
T Consensus       147 ~~iP~~l~~e~Aal~~~~~~ta~~~l-~~~~vk~g~~Vvv~  186 (192)
T d1piwa1         147 VPIPENIWVETLPVGEAGVHEAFERM-EKGDVRYRFTLVGY  186 (192)
T ss_dssp             EECCTTCCEEEEESSHHHHHHHHHHH-HHTCCSSEEEEECC
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEE
Confidence            99999999988776654577899966 78999999999985

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.8e-34  Score=228.62  Aligned_cols=173  Identities=23%  Similarity=0.362  Sum_probs=144.0

Q ss_pred             cceeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCC----
Q 026414            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT----   83 (239)
Q Consensus         8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~----   83 (239)
                      ++|||+++++++++++++|++.|+|++|||||||.++|||++|++++.|.++..++|.++|||++|+|+++|++++    
T Consensus         3 ~k~kA~v~~~~~~pl~i~ev~~P~~~~~evlVkv~a~gIC~sD~~~~~G~~~~~~~P~vlGHE~~G~V~~vG~~v~~~~~   82 (184)
T d1vj0a1           3 LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVNGEKRDLNG   82 (184)
T ss_dssp             EEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEESSCCBCTTS
T ss_pred             ceEEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEECCCCCchhheeccCCccccccccceeeeeeeeEEecccccccc
Confidence            7899999999999999999999999999999999999999999999999887778999999999999999999986    


Q ss_pred             -CCCCCCEEeecCccCCCCCccccCCCCCC-CCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEe-ccee
Q 026414           84 -EVQPGDHVIPCYQAECRECKFCKSGKTNL-CGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH-DVSV  160 (239)
Q Consensus        84 -~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~-c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~  160 (239)
                       .+++||+|++.+..+|++|.+|+.++.+. |.+....+..+.. ...             ....|+|+||+.++ .+.+
T Consensus        83 ~~~~~Gd~V~~~~~~~Cg~C~~C~~g~~~~~c~~~~~~G~~~~~-~~~-------------~~~~Gg~ae~~~v~~~~~v  148 (184)
T d1vj0a1          83 ELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGC-SEY-------------PHLRGCYSSHIVLDPETDV  148 (184)
T ss_dssp             CBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEETTTTCCS-SST-------------TCCCSSSBSEEEECTTCCE
T ss_pred             ccccceeeeEeccccccccChhHhCccccccCCCceeeccCCCC-CCC-------------CCcceeCcCcEEechhHcE
Confidence             46899999999999999999999999765 6665432111100 000             01134999999996 5799


Q ss_pred             EecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEE
Q 026414          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF  201 (239)
Q Consensus       161 ~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~  201 (239)
                      +++|++++.++      ++.+|++++ ++..+++|++|||+
T Consensus       149 ~~ip~~l~~~~------pl~~A~~a~-~~~~~~~G~~VlI~  182 (184)
T d1vj0a1         149 LKVSEKITHRL------PLKEANKAL-ELMESREALKVILY  182 (184)
T ss_dssp             EEECTTCCEEE------EGGGHHHHH-HHHHHTSCSCEEEE
T ss_pred             EECCCCCCHHH------HHHHHHHHH-HHhCCCcCCEEEEe
Confidence            99999998653      345677755 78899999999997

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=100.00  E-value=1.1e-35  Score=235.47  Aligned_cols=170  Identities=21%  Similarity=0.190  Sum_probs=141.4

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd   89 (239)
                      |||+++.++++ ++++|+|.|.|+++|||||+++++||++|++.+.+.....++|.++|||++|+|+++|+++++|++||
T Consensus         1 MKa~v~~~~~~-l~i~e~p~P~~~~~eVlIkv~a~gic~sD~~~~~~~~~~~~~P~i~GhE~~G~V~~vG~~v~~~~vGd   79 (177)
T d1jqba1           1 MKGFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGSEVKDFKPGD   79 (177)
T ss_dssp             CEEEEEEETTE-EEEEECCCCCCCTTCEEEEEEEECCCHHHHHHHHHCTTCCCSSEECCCCEEEEEEEECTTCCSCCTTC
T ss_pred             CeEEEEEeCCC-eEEEEeeCCCCCCCEEEEEEEEEecCCCcccccccCCCCCCCCccCcceeeEEeeecccccceecCCC
Confidence            89999999999 99999999999999999999999999999988765555557899999999999999999999999999


Q ss_pred             EEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEec--ceeEecCCCC
Q 026414           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD--VSVAKIDPQA  167 (239)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~p~~~  167 (239)
                      ||++.+..+|++|.+|..++.+.|.+...+..+|.. .+|                  +|+||+++|.  .+++++|+++
T Consensus        80 rV~v~~~~~cg~c~~C~~g~~~~c~~~~~~~~~g~~-~~G------------------~~aEy~~vp~a~~~l~~iP~~~  140 (177)
T d1jqba1          80 RVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNF-KDG------------------VFGEYFHVNDADMNLAILPKDV  140 (177)
T ss_dssp             EEEECSCCCCSSSHHHHTTCGGGTTSTTTTCCBTTT-BCC------------------SSBSSEEESSHHHHCEECCTTS
T ss_pred             cEEEeeeeccccccchhhhhhcccccccccccccCC-CCh------------------hcCeeEEEEhhhCeEEECCCCc
Confidence            999999999999999999999999987654334433 444                  9999999985  4789999999


Q ss_pred             CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHH
Q 026414          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAV  210 (239)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~a  210 (239)
                      ++++++...   .+++..+        ++.+||+|+|++|+.+
T Consensus       141 ~~~~~~~~~---~~~~~~~--------~~~vlv~g~gp~gl~a  172 (177)
T d1jqba1         141 DLSKLVTHV---YHGFDHI--------EEALLLMKDKPKDLIK  172 (177)
T ss_dssp             CGGGGEEEE---EESGGGH--------HHHHHHHHHCCTTCSE
T ss_pred             chHHHHHHH---HHHHHHh--------cCceEEECCCHHHhhe
Confidence            987765432   2233222        2446777777777654

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=5.3e-36  Score=242.00  Aligned_cols=191  Identities=21%  Similarity=0.260  Sum_probs=153.5

Q ss_pred             eeEEEEecCCCCeEEEeecCCCC-------CCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPP-------QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV   82 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~-------~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v   82 (239)
                      +||++++++++ ++++|+|.|++       .+||||||+.+++||++|++++.|.++. .+|.++|||++|+|+++|+++
T Consensus         2 ~kA~v~~~~~~-le~~e~~~P~~~~p~~~p~~~eVlVkv~a~giC~sDl~~~~G~~~~-~~P~v~GHE~~G~Vv~vG~~V   79 (201)
T d1kola1           2 NRGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTA-QVGLVLGHEITGEVIEKGRDV   79 (201)
T ss_dssp             EEEEEEEETTE-EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSCC-CTTCBCCCCEEEEEEEECTTC
T ss_pred             cEEEEEeCCCc-eEEEEecCCcccCCCCCCCCCEEEEEEEEEEEcchhhhhhcCCccc-ccceeccceeeeeeecccccc
Confidence            69999999998 99999999975       4699999999999999999999988764 689999999999999999999


Q ss_pred             CCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEec--cee
Q 026414           83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD--VSV  160 (239)
Q Consensus        83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~  160 (239)
                      ++|++||||++.+..+|++|.+|++++.+.|.+.......|......            .....|+|+||+++|.  .++
T Consensus        80 ~~~~vGdrV~v~~~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~g~~~------------~~~~~Gg~aeyv~vp~~~~~l  147 (201)
T d1kola1          80 ENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVD------------MGDWTGGQAEYVLVPYADFNL  147 (201)
T ss_dssp             CSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTT------------SCCBCCCSBSEEEESSHHHHC
T ss_pred             ccccccceeEEeeeeeccCChhhhCCCcccccccccccccccccccC------------CCccccccccEEEeehHHCeE
Confidence            99999999999999999999999999999998765432222210000            0012359999999975  479


Q ss_pred             EecCCCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC
Q 026414          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA  219 (239)
Q Consensus       161 ~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~  219 (239)
                      ++||++.++.+++.+...+.++++++ .....+.++    +|+|++|++++|+||++|+
T Consensus       148 ~~iPd~~~~~~~~~~~~~~~~~~~a~-~~~~~~~g~----~g~G~vG~~~i~~ak~~GA  201 (201)
T d1kola1         148 LKLPDRDKAMEKINIAEVVGVQVISL-DDAPRGYGE----FDAGVPKKFVIDPHKTFSA  201 (201)
T ss_dssp             EECSCHHHHHHTCCHHHHHTEEEECG-GGHHHHHHH----HHHTCSCEEEECTTCSSCC
T ss_pred             EECCCCCChHHHHHHHHHHHHHHHHH-HhCCCCCeE----EeeCHHHHHHHHHHHHcCC
Confidence            99999866666666666677777754 344444343    4889999999999998885

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=4.1e-33  Score=220.72  Aligned_cols=166  Identities=26%  Similarity=0.407  Sum_probs=139.6

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCC--------CCCCCCeeeeeeEEEEEEEeCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD--------PEGLFPCILGHEAAGIVESVGEG   81 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~--------~~~~~p~~~G~e~vG~Vv~vG~~   81 (239)
                      |||++++++|++|+++|++.|+|++||||||+++++||++|++++.|.+        ...++|.++|||++|+|+++|+.
T Consensus         1 MKA~~~~~~G~pl~i~dv~~P~p~~~eVlVkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~~~g~~   80 (177)
T d1jvba1           1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE   80 (177)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred             CeEEEEEeCCCCCEEEEeeCCCCCCCEEEEEEEEEecccceeeeecCcccccccccccccCCCccccceEEEEEeeeccC
Confidence            8999999999999999999999999999999999999999999998864        23368999999999999999999


Q ss_pred             CCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecce-e
Q 026414           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS-V  160 (239)
Q Consensus        82 v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~  160 (239)
                      +++|++||||++.+...|+.|.+|+.++.+.|.+...   .|.. .+|                  +|+||+.++... +
T Consensus        81 v~~~~~GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~---~g~~-~~G------------------~~aey~~vp~~~~~  138 (177)
T d1jvba1          81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRW---LGIN-FDG------------------AYAEYVIVPHYKYM  138 (177)
T ss_dssp             CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEE---BTTT-BCC------------------SSBSEEEESCGGGE
T ss_pred             ccccccCceEeeeeccccccccccccccccccCCcce---eeec-ccc------------------ccccEEEEEhHHeE
Confidence            9999999999999999999999999999999997654   3433 445                  999999997655 5


Q ss_pred             EecCCCCCchhhhhc-ccccchhhhhhhhhcCCCCCCEEEE
Q 026414          161 AKIDPQAPLDKVCLL-GCGVPTGLGAVWNTAKVEPGSIVAV  200 (239)
Q Consensus       161 ~~~p~~~~~~~aa~l-~~~~~ta~~~~~~~~~~~~g~~vlI  200 (239)
                      +++|+..+ .+++.+ ..++.++++++ ...+. .|++|||
T Consensus       139 ~~~~~~~~-~~~a~~~~~~~~~a~~~~-~~~~~-~G~~VlI  176 (177)
T d1jvba1         139 YKLRRVKP-MITKTMKLEEANEAIDNL-ENFKA-IGRQVLI  176 (177)
T ss_dssp             EECSSSCC-CCEEEEEGGGHHHHHHHH-HTTCC-CSEEEEE
T ss_pred             EECCCCCh-HHHHHHHHHHHHHHHHHH-Hhhcc-cCCceEC
Confidence            56655444 455544 45777888866 55555 5899987

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=1.3e-32  Score=216.57  Aligned_cols=168  Identities=30%  Similarity=0.467  Sum_probs=141.8

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCC-CCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-PEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~-~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G   88 (239)
                      |||+++++.+++|+++|+|.|+|++|||||||++++||++|++.+.+.. ....+|.++|||++|+|+++|++++++++|
T Consensus         1 MkA~v~~~~g~pl~i~~v~~P~~~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~p~v~GhE~~G~Vv~vG~~v~~~~vG   80 (171)
T d1rjwa1           1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVG   80 (171)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEecCCCCcEEEEeECCCCCCCeEEEEEEEeeccccceeeeecccccccccccccCCEEEEEEEEecccccCceee
Confidence            8999999999999999999999999999999999999999999887653 444789999999999999999999999999


Q ss_pred             CEEeecC-ccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCC
Q 026414           89 DHVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (239)
Q Consensus        89 d~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~  167 (239)
                      |||.+.+ ...|+.|..|..+..+.|.+...   .|.. .+|                  +|+||+++++++++++|+++
T Consensus        81 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~iP~~~  138 (171)
T d1rjwa1          81 DRVGIPWLYSACGHCDYCLSGQETLCEHQKN---AGYS-VDG------------------GYAEYCRAAADYVVKIPDNT  138 (171)
T ss_dssp             CEEEECSEEECCSCSHHHHTTCGGGCTTCEE---BTTT-BCC------------------SSBSEEEEEGGGCEECCTTC
T ss_pred             eEEeeccccccccccccccCCCccccccccc---ccee-ccC------------------ccccceEecHHHEEECCCCC
Confidence            9998766 44678999999999999987654   3333 344                  99999999999999999999


Q ss_pred             CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC
Q 026414          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL  203 (239)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~  203 (239)
                      +++.|+ +. .+.++++++ .+..+ +|++|||+|.
T Consensus       139 ~~e~A~-l~-~~~~~~~~~-~~~~~-~G~tVlViG~  170 (171)
T d1rjwa1         139 IIEVQP-LE-KINEVFDRM-LKGQI-NGRVVLTLED  170 (171)
T ss_dssp             CEEEEE-GG-GHHHHHHHH-HTTCC-SSEEEEECCC
T ss_pred             CHHHHH-HH-HHHHHHHHH-HhcCC-CCCEEEEeCC
Confidence            986654 33 345666655 34444 5999999874

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=4.9e-32  Score=214.81  Aligned_cols=165  Identities=25%  Similarity=0.419  Sum_probs=133.3

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd   89 (239)
                      |||++.+++++||+++|+|.|+|++||||||+.+++||++|++.+.|......+|.++|||++|+|+++|++++++++||
T Consensus         1 m~a~~~~~~~~pl~i~ev~~P~pg~geVlVkv~a~gic~sDl~~~~g~~~~~~~P~i~GhE~~G~V~~vG~~V~~~~vGd   80 (179)
T d1uufa1           1 IKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKYAPGD   80 (179)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEECTTCCSCCTTC
T ss_pred             CeEEEEccCCCCCEEEEecCCCCCCCEEEEEEEEECCCCCcceeeeeeeccccccccccccccccchhhccccccCCCCC
Confidence            89999999999999999999999999999999999999999999999877778999999999999999999999999999


Q ss_pred             EEeecC-ccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCC
Q 026414           90 HVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (239)
Q Consensus        90 ~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~  168 (239)
                      +|.+.+ ...|++|.+|..++.+.|.+.......... ..+             ....|+|+||+++|+++++++|+...
T Consensus        81 rV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~-~~~-------------~~~~GgfaEy~~v~~~~~~~ip~~~~  146 (179)
T d1uufa1          81 LVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTP-DEP-------------GHTLGGYSQQIVVHERYVLRIRVADI  146 (179)
T ss_dssp             EEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCS-STT-------------SBCCCSSBSEEEEEGGGCEECCCCCE
T ss_pred             EEEEcccccccCccccccCcccccCCCccccccccCC-CCC-------------cccccccceEEEechHHEEECCCCCc
Confidence            998776 568999999999999999975432111111 000             11235999999999999999996653


Q ss_pred             chhhhhcccccchhhhhhhhhcCC
Q 026414          169 LDKVCLLGCGVPTGLGAVWNTAKV  192 (239)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~  192 (239)
                      ....+   .++.++++++ .++.+
T Consensus       147 ~~~~a---~~l~~a~~a~-~~a~v  166 (179)
T d1uufa1         147 EMIRA---DQINEAYERM-LRGDV  166 (179)
T ss_dssp             EEECG---GGHHHHHHHH-HTTCS
T ss_pred             ChhHh---chhHHHHHHH-HHhCc
Confidence            32222   2455677755 34444

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.9e-30  Score=197.27  Aligned_cols=145  Identities=20%  Similarity=0.303  Sum_probs=130.4

Q ss_pred             ceeEEEEecCCCC--eEEE-eecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCC-CCCeeeeeeEEEEEEEeCCCCCC
Q 026414            9 TCKAAVAWEPNKP--LVIE-DVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVGEGVTE   84 (239)
Q Consensus         9 ~~~a~~~~~~~~~--~~~~-~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~-~~p~~~G~e~vG~Vv~vG~~v~~   84 (239)
                      .|||+++++.|++  ++++ |+|.|+|++|||||||++++||++|.+.+.|.+... .+|.++|||++|+|+++|+++++
T Consensus         2 ~MkAv~~~~~G~p~~l~~~~~~~~P~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~~vG~~v~~   81 (150)
T d1yb5a1           2 LMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASA   81 (150)
T ss_dssp             EEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTCTT
T ss_pred             ceeEEEEEccCCcceEEEEeecCCCCCCCCeEEEEEEEecCcccchhhhcCCcCccccccccCccceeeeeEeecceeec
Confidence            5999999987775  7774 689999999999999999999999999999876543 68899999999999999999999


Q ss_pred             CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (239)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p  164 (239)
                      |++||||+..+.                              .+|                  +|+||+.++...++++|
T Consensus        82 ~~vGdrV~~~~~------------------------------~~G------------------~~ae~~~v~~~~~~~iP  113 (150)
T d1yb5a1          82 FKKGDRVFTSST------------------------------ISG------------------GYAEYALAADHTVYKLP  113 (150)
T ss_dssp             CCTTCEEEESCC------------------------------SSC------------------SSBSEEEEEGGGEEECC
T ss_pred             cccCcccccccc------------------------------ccc------------------ccccccccccccccccc
Confidence            999999975432                              233                  99999999999999999


Q ss_pred             CCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEE
Q 026414          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF  201 (239)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~  201 (239)
                      +++++++|+.++++..|++++++.....+.|+++||+
T Consensus       114 ~~ls~~~Aa~~~~~~~ta~~~~~~~g~~~~G~~vliL  150 (150)
T d1yb5a1         114 EKLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  150 (150)
T ss_dssp             TTCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             CCCCHHHHHHhhhhhhhehhhheEEcCcccCCEEEEC
Confidence            9999999999999999999999899999999999984

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=2.8e-28  Score=187.13  Aligned_cols=141  Identities=22%  Similarity=0.289  Sum_probs=121.6

Q ss_pred             eEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414           11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (239)
Q Consensus        11 ~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G   88 (239)
                      ++++|++.|.+  |+++|.+.|+|++|||||||++++||++|++++.|.++...+|.++|||++|+|+++|+++++|++|
T Consensus         2 ~~i~~~~~G~pe~l~~~e~~~P~p~~~eVlVkv~a~~in~~D~~~~~G~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vG   81 (147)
T d1qora1           2 TRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIKAG   81 (147)
T ss_dssp             EEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             eEEEEcccCCCceeEEEEecCCCCCCCEEEEEEEEecccceeeeeecCCCCCCcceeeeccccccceeeeeeeccccccc
Confidence            57889988887  9999999999999999999999999999999999998877899999999999999999999999999


Q ss_pred             CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCC
Q 026414           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (239)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~  168 (239)
                      |||+....                              .                  .|+|++|..++.+.++++|++++
T Consensus        82 drV~~~~~------------------------------~------------------~G~~ae~~~v~~~~~~~~P~~~~  113 (147)
T d1qora1          82 DRVVYAQS------------------------------A------------------LGAYSSVHNIIADKAAILPAAIK  113 (147)
T ss_dssp             CEEEESCC------------------------------S------------------SCCSBSEEEEEGGGEEECCTTSC
T ss_pred             ceeeeecc------------------------------c------------------cccceeEEEEehHHeEEcCcccc
Confidence            99973221                              1                  23899999999999999999988


Q ss_pred             chhhhh--cccccchhhhhhhhhcCCCCCCEEEE
Q 026414          169 LDKVCL--LGCGVPTGLGAVWNTAKVEPGSIVAV  200 (239)
Q Consensus       169 ~~~aa~--l~~~~~ta~~~~~~~~~~~~g~~vlI  200 (239)
                      ++++++  +++...+++++++ ..++++|++|||
T Consensus       114 ~~~a~a~~~~~~~~~~~~~l~-~~~~~~G~~VLI  146 (147)
T d1qora1         114 VDVAEQQKYPLKDAQRAHEIL-ESRATQGSSLLI  146 (147)
T ss_dssp             CCCCGGGEEEGGGHHHHHHHH-HTTCCCBCCEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHH-HhCCCCCCEEEe
Confidence            775544  4556666666664 467899999998

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=7.6e-28  Score=181.10  Aligned_cols=130  Identities=18%  Similarity=0.211  Sum_probs=116.8

Q ss_pred             eeEEEEecCCCCeEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCC-CCCeeeeeeEEEEEEEeCCCCCCCCCC
Q 026414           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVGEGVTEVQPG   88 (239)
Q Consensus        10 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~-~~p~~~G~e~vG~Vv~vG~~v~~~~~G   88 (239)
                      |||+++++.|++++++|++.|.|++||||||+++++||++|++.+.|.++.. .+|.++|||++|+|           +|
T Consensus         1 MkA~~~~~~G~~l~~~e~~~p~p~~~eVlVkv~a~gin~~D~~~~~G~~~~~~~~P~v~G~E~~G~V-----------vG   69 (131)
T d1iz0a1           1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVV-----------EG   69 (131)
T ss_dssp             CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEE-----------TT
T ss_pred             CcEEEEccCCCCCEEEEccCCCCCCCEEEEEEEEEeccccccccccccccccccceeEeeeeeEEee-----------cc
Confidence            8999999999999999999999999999999999999999999999987553 78999999999999           39


Q ss_pred             CEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCCCC
Q 026414           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (239)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~  168 (239)
                      |+|....                               .+                  |+|+||+.++.+.++++|++++
T Consensus        70 d~V~~~~-------------------------------~~------------------G~~aey~~v~~~~~~~~P~~~~  100 (131)
T d1iz0a1          70 RRYAALV-------------------------------PQ------------------GGLAERVAVPKGALLPLPEGRP  100 (131)
T ss_dssp             EEEEEEC-------------------------------SS------------------CCSBSEEEEEGGGCEECCTTCC
T ss_pred             ceEEEEe-------------------------------cc------------------CccceeeeeCHHHeEEccCCCC
Confidence            9997432                               22                  3999999999999999999999


Q ss_pred             chhhhhcccccchhhhhhhhhcCCCCCCEEEEE
Q 026414          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF  201 (239)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~  201 (239)
                      +++||.+.+++.|||+++.++.  ..|++||++
T Consensus       101 ~~~aa~~~~~~~Ta~~al~~~g--~~g~tvl~l  131 (131)
T d1iz0a1         101 VVGPVFPFAEAEAAFRALLDRG--HTGKVVVRL  131 (131)
T ss_dssp             CEEEEEEGGGHHHHHHHTTCTT--CCBEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc--cCCCEEEEC
Confidence            9999999999999999987766  459999873

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.95  E-value=6.9e-28  Score=185.96  Aligned_cols=148  Identities=15%  Similarity=0.181  Sum_probs=124.6

Q ss_pred             cceeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCC-CCCCeeeeeeEEEEEEEeCCCCCC
Q 026414            8 ITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTE   84 (239)
Q Consensus         8 ~~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~vG~Vv~vG~~v~~   84 (239)
                      .+|||+++++.+++  +++++++.|+|++|||||||++++||++|++.+.|.++. ..+|.++|+|++|+|++  ..++.
T Consensus         2 ~~~KA~v~~~~~~~~~~~i~~v~~P~~~~~eVlVkV~a~gin~~D~~~~~g~~~~~~~~p~v~g~e~~G~v~~--~~~~~   79 (152)
T d1xa0a1           2 SAFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVS--SQHPR   79 (152)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEE--CCSSS
T ss_pred             CceEEEEEEecCCceEEEEEEccCCCCCCCEEEEEEEEeCCChHHHHHHhhcccccccccceeeeeeeeeeec--cCCCc
Confidence            38999999999886  558899999999999999999999999999998887653 36899999999999999  55678


Q ss_pred             CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (239)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p  164 (239)
                      |++||+|....+.                        .+.. .+                  |+|+||+.+|.+.++++|
T Consensus        80 ~~~g~~v~~~~~~------------------------~~~~-~~------------------G~~aEy~~v~~~~~~~iP  116 (152)
T d1xa0a1          80 FREGDEVIATGYE------------------------IGVT-HF------------------GGYSEYARLHGEWLVPLP  116 (152)
T ss_dssp             CCTTCEEEEESTT------------------------BTTT-BC------------------CSSBSEEEECGGGCEECC
T ss_pred             cccCCEEEEecCc------------------------cccc-cC------------------CCcceeeeehhhccccCC
Confidence            9999999754321                        1111 23                  399999999999999999


Q ss_pred             CCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEc
Q 026414          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFG  202 (239)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G  202 (239)
                      ++++ .+|++++++..|++.++..+.+++ |++|||+|
T Consensus       117 ~~l~-~~aa~l~~a~~ta~~~~~~~~~~~-G~tVL~l~  152 (152)
T d1xa0a1         117 KGLE-RIAQEISLAELPQALKRILRGELR-GRTVVRLA  152 (152)
T ss_dssp             TTHH-HHEEEEEGGGHHHHHHHHHHTCCC-SEEEEECC
T ss_pred             CCCC-HHHHHHHHHHHHHHHHHHHhcCCC-CCEEEEcC
Confidence            9998 478888889889888888888886 99999975

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.92  E-value=4.1e-27  Score=185.14  Aligned_cols=157  Identities=20%  Similarity=0.130  Sum_probs=128.9

Q ss_pred             ccceeEEEEecCCCC-----eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCC----------CCCeeeeeeE
Q 026414            7 VITCKAAVAWEPNKP-----LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG----------LFPCILGHEA   71 (239)
Q Consensus         7 ~~~~~a~~~~~~~~~-----~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~----------~~p~~~G~e~   71 (239)
                      +.||||+++.+.|+|     ++..++|.|+|++|||||||++++||++|++.+.|.++..          .+|.++|+|+
T Consensus         1 m~t~kA~v~~~~G~p~~~l~l~~~~~p~p~~~~~eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~   80 (175)
T d1gu7a1           1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEG   80 (175)
T ss_dssp             CEEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCC
T ss_pred             CceeEEEEEccCCCcccccEEEEEECCCCCCCcCEEEEEEEEeccCcceeEEEecCcccccccccccCCCCCCccccccc
Confidence            358999999998886     4556788888999999999999999999999988764221          4778999999


Q ss_pred             EEEEEEeCCCCCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceee
Q 026414           72 AGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQ  151 (239)
Q Consensus        72 vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~  151 (239)
                      +|+|+++|..+..++.||+|.....                              .+                  |+|+|
T Consensus        81 ~g~V~~~~~~~~~~~~g~~v~~~~~------------------------------~~------------------g~~ae  112 (175)
T d1gu7a1          81 LFEVIKVGSNVSSLEAGDWVIPSHV------------------------------NF------------------GTWRT  112 (175)
T ss_dssp             EEEEEEECTTCCSCCTTCEEEESSS------------------------------CC------------------CCSBS
T ss_pred             ccccccccccccccccccceecccc------------------------------cc------------------ccccc
Confidence            9999999999999999999974432                              22                  38999


Q ss_pred             eEEEecceeEecCCCCCchhhhhcccccchhhhhhhh-hcCCCCCCEEEEEcC--CHHHHHHHHH
Q 026414          152 YTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN-TAKVEPGSIVAVFGL--GTVGLAVAEG  213 (239)
Q Consensus       152 ~~~~~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~-~~~~~~g~~vlI~G~--g~~g~~ai~~  213 (239)
                      |+.++.++++++|++++.+.+  +.+...|+|+++.. ...+++|++|||.|+  |++|.+++|+
T Consensus       113 y~~v~~~~~~~iP~~~~~~~a--~~~~~~ta~~~l~~~~~~~~~g~~vli~gaa~~gvG~~~iQ~  175 (175)
T d1gu7a1         113 HALGNDDDFIKLPNPAQSKAN--GKPNGLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLITY  175 (175)
T ss_dssp             EEEEEGGGEEEECCHHHHHHT--TCSCCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEEC
T ss_pred             eeeehhhhccCCCccchhhhh--ccchHHHHHHHHHHHhcCCCCCCEEEEECccchhhhheEEeC
Confidence            999999999999998764444  45577888887754 467999999999964  6799887763

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.92  E-value=2.5e-26  Score=178.94  Aligned_cols=152  Identities=18%  Similarity=0.154  Sum_probs=126.2

Q ss_pred             cceeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCC-CCCeeeeeeEEEEEEEeCCCCCC
Q 026414            8 ITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVGEGVTE   84 (239)
Q Consensus         8 ~~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~-~~p~~~G~e~vG~Vv~vG~~v~~   84 (239)
                      .+|||+++..+++.  +++++++.|++++|||||||++++||++|++.+.|.++.. .+|.++|+|++|+|++  +.+.+
T Consensus         2 ~~~ka~~~~~~g~~~~l~~~~v~~p~l~~~eVLVkV~a~gin~~D~~~~~g~~~~~~~~~~~~g~e~~G~v~~--~~~~~   79 (162)
T d1tt7a1           2 TLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVS--SNDPR   79 (162)
T ss_dssp             CEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEE--CSSTT
T ss_pred             CcEEEEEEEecCCCeEEEEEEcCCCCCCCCEEEEEEEEecccchhhheeeecccccccceeeeeeeccccccc--ccccc
Confidence            57999999976664  9999999999999999999999999999999999887543 6789999999999998  45678


Q ss_pred             CCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecC
Q 026414           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (239)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p  164 (239)
                      +++||+|......                        .|.. .+                  |+|+||+.+|.+.++++|
T Consensus        80 ~~~g~~v~~~~~~------------------------~g~~-~~------------------G~~aey~~v~~~~l~~iP  116 (162)
T d1tt7a1          80 FAEGDEVIATSYE------------------------LGVS-RD------------------GGLSEYASVPGDWLVPLP  116 (162)
T ss_dssp             CCTTCEEEEESTT------------------------BTTT-BC------------------CSSBSSEEECGGGEEECC
T ss_pred             cccceeeEeeecc------------------------ceec-cc------------------cccceEEEecHHHEEECC
Confidence            9999999765431                        1111 23                  399999999999999999


Q ss_pred             CCCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CH
Q 026414          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GT  205 (239)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~  205 (239)
                      +++++++||.+++...|+|.++. ......+++|||.|+ |.
T Consensus       117 ~~ls~~~Aa~~~~~~~ta~~~~~-~~~~~~~~~Vli~ga~G~  157 (162)
T d1tt7a1         117 QNLSLKEAMVDQLLTIVDREVSL-EETPGALKDILQNRIQGR  157 (162)
T ss_dssp             TTCCHHHHHHSCSTTSEEEEECS-TTHHHHHHHTTTTCCSSE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEECCcce
Confidence            99999999999999999998653 344556677888766 43

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.3e-24  Score=166.15  Aligned_cols=130  Identities=15%  Similarity=0.162  Sum_probs=108.3

Q ss_pred             eeEEEEecCCCC--eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCC-CCCeeeeeeEEEEEEEeCCCCCCCC
Q 026414           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVGEGVTEVQ   86 (239)
Q Consensus        10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~-~~p~~~G~e~vG~Vv~vG~~v~~~~   86 (239)
                      |||+++++.+++  +++++++.|+|++|||||||.+++||+.|.....|.++.. .+|.++|+|++|+|+++|..  .++
T Consensus         1 MkA~v~~~~~~~~~l~i~~v~~p~~~~geVlVkV~a~gin~~D~~~~~G~~~~~~~~p~v~G~e~~G~V~~~~~~--~~~   78 (146)
T d1o89a1           1 LQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIPGIDFAGTVRTSEDP--RFH   78 (146)
T ss_dssp             CEEEEEECC---CEEEEEECCGGGSCSCSEEEEEEEEECCHHHHHHHHTCSSCCCSSSBCCCSEEEEEEEEECST--TCC
T ss_pred             CeEEEEEcCCCceEEEEEEcCCCCCCCCEEEEEEeeccCccceeeEEEeecccccccceeccccccccceeeccC--Ccc
Confidence            899999988886  7889999999999999999999999999999999986543 68999999999999998764  799


Q ss_pred             CCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeEecCCC
Q 026414           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (239)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~  166 (239)
                      +||+|.+....                        .|.. .+                  |+|+||+.+|.+.++++|++
T Consensus        79 ~g~~v~~~~~~------------------------~g~~-~~------------------G~~Aey~~v~~~~vv~lP~~  115 (146)
T d1o89a1          79 AGQEVLLTGWG------------------------VGEN-HW------------------GGLAEQARVKGDWLVAMPQG  115 (146)
T ss_dssp             TTCEEEEECTT------------------------BTTT-BC------------------CSSBSEEEECGGGCEECCTT
T ss_pred             ceeeEEeeccc------------------------ceec-CC------------------CcceeeeeeeeeeEEECCCC
Confidence            99999764321                        1211 23                  39999999999999999999


Q ss_pred             CCchhhhhcccccchhhh
Q 026414          167 APLDKVCLLGCGVPTGLG  184 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~  184 (239)
                      +|+++||.++++..||+.
T Consensus       116 ls~~eAA~l~~a~~tA~~  133 (146)
T d1o89a1         116 QAAKEISLSEAPNFAEAI  133 (146)
T ss_dssp             SCCEEECGGGHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            999999999877766643

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.63  E-value=4e-15  Score=112.77  Aligned_cols=133  Identities=14%  Similarity=0.133  Sum_probs=97.1

Q ss_pred             cceeEEEEecC--CCC----eEEEeecCCCCCCCeEEEEEeEeeechhhhhhhcCCCCCCCCCeeeeeeEEEEEEEeCCC
Q 026414            8 ITCKAAVAWEP--NKP----LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG   81 (239)
Q Consensus         8 ~~~~a~~~~~~--~~~----~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~vG~Vv~vG~~   81 (239)
                      .+.|++++...  |.|    |+++|.+.|+|++||||||+++.++++........   . .....+..+++|+|++  ++
T Consensus         2 ~~~k~~vl~~~P~G~P~~~~f~l~e~~ip~~~~gevLvk~~~~svDp~~R~~~~~---~-~~g~~~~g~~vg~Vv~--S~   75 (147)
T d1v3va1           2 VKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIASKR---L-KEGAVMMGQQVARVVE--SK   75 (147)
T ss_dssp             CEEEEEEESSCCCSSCCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHGGG---S-CTTSBCCCCEEEEEEE--ES
T ss_pred             cccEEEEEccCCCCCCcccceEEEEEECCCCCCCEEEEEEEEEeEcccccccccc---c-ccCCccccceEEEEEE--eC
Confidence            46778887654  333    99999999999999999999999998765433322   1 2233566688999998  66


Q ss_pred             CCCCCCCCEEeecCccCCCCCccccCCCCCCCCCcCCCCCCceeccCCccccccCCcceeeecCCcceeeeEEEecceeE
Q 026414           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA  161 (239)
Q Consensus        82 v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  161 (239)
                      .++|++||+|...                                                    ++|++|.+.+.+.+.
T Consensus        76 ~~~f~~GD~V~g~----------------------------------------------------~gw~ey~v~~~~~l~  103 (147)
T d1v3va1          76 NSAFPAGSIVLAQ----------------------------------------------------SGWTTHFISDGKGLE  103 (147)
T ss_dssp             CTTSCTTCEEEEC----------------------------------------------------CCSBSEEEECSSSCE
T ss_pred             CCcccCCCEEEEc----------------------------------------------------cCCEeEEEeccceee
Confidence            7789999999621                                                    279999999999999


Q ss_pred             ecCCCCCc-----hhhhhcccccchh-hhhhhhhcCCCCCCEEEE
Q 026414          162 KIDPQAPL-----DKVCLLGCGVPTG-LGAVWNTAKVEPGSIVAV  200 (239)
Q Consensus       162 ~~p~~~~~-----~~aa~l~~~~~ta-~~~~~~~~~~~~g~~vlI  200 (239)
                      ++|++++.     ...+.+....+|| |..+  ....+.|++||+
T Consensus       104 kv~~~~~~~~~~~~~~~~lG~~Gmtaay~gl--~~~~k~Getvv~  146 (147)
T d1v3va1         104 KLLTEWPDKKIQYHEHVTKGFENMPAAFIEM--LNGANLGKAVVT  146 (147)
T ss_dssp             ECCTTCCTTSSCCCEEEEECGGGHHHHHHHH--HTTCCSSEEEEE
T ss_pred             EccccccccccchhhhHhccccchHHHHHHh--hCCCCCCCEEEe
Confidence            99876432     2344455666664 4344  344578999987

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.45  E-value=7.7e-14  Score=108.57  Aligned_cols=70  Identities=53%  Similarity=0.846  Sum_probs=65.9

Q ss_pred             chhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      +.+||.+.|++.|+|+++++..++++|++|||+|+|++|++++|+++++|+++|++++++++|+++++++
T Consensus         2 P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l   71 (174)
T d1p0fa2           2 PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL   71 (174)
T ss_dssp             CGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc
Confidence            4679999999999999998999999999999999999999999999999998999999999999998763

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.44  E-value=9.8e-14  Score=108.02  Aligned_cols=71  Identities=56%  Similarity=0.920  Sum_probs=67.2

Q ss_pred             CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      ++++||.+.|++.|+|+++.+..++++|++|+|+|+|++|++++|+++++|+++|++++.+++|+++++++
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~   72 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL   72 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh
Confidence            46789999999999999998999999999999999999999999999999998999999999999999864

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.44  E-value=8.3e-14  Score=108.04  Aligned_cols=71  Identities=68%  Similarity=1.076  Sum_probs=66.4

Q ss_pred             CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      ++++||.+.|++.|+|+++.++.++++|++|||+|+|++|++++|+++.+|+++|++++++++|+++++++
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l   72 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF   72 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh
Confidence            46789999999999999998899999999999999999999999999999998999999999999998753

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.43  E-value=1.5e-13  Score=107.17  Aligned_cols=71  Identities=56%  Similarity=0.999  Sum_probs=67.4

Q ss_pred             CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      ++++||.+.|++.|+|+++.+..++++|++|+|+|+|++|++++|+++.+|+.+|++++.+++|+++++++
T Consensus         3 P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2           3 PPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            47899999999999999998999999999999999999999999999999988999999999999999864

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.9e-13  Score=106.11  Aligned_cols=71  Identities=25%  Similarity=0.288  Sum_probs=66.0

Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      +|+++||+++++++|||+++.+..++++|++|||+|+ |++|++++|+++++|+ +|++++++++|+++++++
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~~   72 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQN   72 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCc-cccccccccccccccccc
Confidence            5789999999999999999988999999999999987 9999999999999999 899999999999888753

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.38  E-value=4.6e-13  Score=103.98  Aligned_cols=71  Identities=56%  Similarity=0.950  Sum_probs=66.7

Q ss_pred             CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      ++++||.++|++.|+|+++++..++++||+|||+|+|++|++++++++.+|+.+|++++++++|+++++++
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~   72 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV   72 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh
Confidence            46789999999999999999999999999999999999999999999999988999999999999998753

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.37  E-value=3.9e-13  Score=103.37  Aligned_cols=70  Identities=26%  Similarity=0.379  Sum_probs=65.0

Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      +|+++||.++|++.|||+++ ++.++++|++|+|+|+|++|++++|++|.+|+ +|++++++++|+++++++
T Consensus         1 v~f~~aA~l~ca~~Ta~~al-~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~~   70 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGL-KQTNARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARKL   70 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhcc
Confidence            47899999999999999987 67899999999999999999999999999997 999999999999998753

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=2e-13  Score=106.19  Aligned_cols=70  Identities=21%  Similarity=0.176  Sum_probs=65.5

Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +|+++||+++++++|||+++.+..++++|++|||+|+ |++|++++|+|+..|+ +|++++++++|++++++
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~   71 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALK   71 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHh
Confidence            5789999999999999999988889999999999977 8899999999999999 99999999999998865

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.35  E-value=5e-13  Score=103.90  Aligned_cols=71  Identities=34%  Similarity=0.538  Sum_probs=65.7

Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      +++++|+.++++++|+|+++ +..++++|++|+|+|+|++|++++|+++.+|+++|++++++++|+++++++
T Consensus         1 ip~e~A~~l~~~~~ta~~a~-~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l   71 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY   71 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH
T ss_pred             CCHHHHHHhhhHHHHHHHHH-HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh
Confidence            46789999999999999976 779999999999999999999999999999998999999999999998753

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.34  E-value=7.4e-13  Score=102.16  Aligned_cols=69  Identities=26%  Similarity=0.291  Sum_probs=62.7

Q ss_pred             CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      +.+.||.+.|+..|+|+++ .+.++++|++|+|+|+|++|++++|+++.+|+ +|++++++++|+++++++
T Consensus         2 p~e~AApl~cag~Ta~~al-~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~l   70 (168)
T d1piwa2           2 PSHLAAPLLCGGLTVYSPL-VRNGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM   70 (168)
T ss_dssp             CHHHHGGGGTHHHHHHHHH-HHTTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHH-HHhCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhcc
Confidence            4567889999999999977 57899999999999999999999999999999 899999999999998753

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.34  E-value=1.1e-12  Score=101.82  Aligned_cols=71  Identities=38%  Similarity=0.609  Sum_probs=66.3

Q ss_pred             CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      +++.|+.++|++.|||+++++..++++|++|||+|+|++|++++|+++++|++++++++++++|+++++++
T Consensus         2 P~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~   72 (174)
T d1f8fa2           2 PIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL   72 (174)
T ss_dssp             CGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH
T ss_pred             CHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc
Confidence            46789999999999999999999999999999999999999999999999998889999999999998764

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.32  E-value=6.4e-13  Score=102.90  Aligned_cols=70  Identities=24%  Similarity=0.307  Sum_probs=64.1

Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      +++++||.++++++|||+++ .+.++++|++|||+|+ |++|++++|+++++|+ +|++++++++|++.++++
T Consensus         1 ls~eeAA~l~~~~~TA~~al-~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~l   71 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLAL-KRAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLAL   71 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHH-HHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccchhhhhhhhccccc-cccccccccccccccccc
Confidence            57899999999999999987 5689999999999987 9999999999999999 899999999999888753

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.32  E-value=1.8e-12  Score=100.31  Aligned_cols=71  Identities=62%  Similarity=1.059  Sum_probs=66.7

Q ss_pred             CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      ++++||.+.|++.|+|+++.+..++++|++|+|+|+|++|++++++++..|..+|++++++++|+++++++
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~   72 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF   72 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc
Confidence            46789999999999999998999999999999999999999999999999998999999999999998764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.32  E-value=1.2e-12  Score=102.25  Aligned_cols=71  Identities=25%  Similarity=0.250  Sum_probs=65.1

Q ss_pred             CchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      +++.+|.+.|+..|||+++.+..++++|++|||+|+|++|++++|+++++|+.+|++++++++|+++++++
T Consensus         2 d~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l   72 (182)
T d1vj0a2           2 DLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI   72 (182)
T ss_dssp             CHHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT
T ss_pred             cHHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc
Confidence            34578889999999999998888999999999999999999999999999988899999999999998764

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=1.8e-12  Score=99.96  Aligned_cols=70  Identities=27%  Similarity=0.305  Sum_probs=63.0

Q ss_pred             CCCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +.+++.+|.+.|+..|+|+++ ++.++++|++|||+|+|++|++++|++|.+|+ ++++++.+++|++++++
T Consensus         3 ~~~~a~~Apl~Cag~Tay~al-~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~   72 (168)
T d1uufa2           3 QEQLAAVAPLLCAGITTYSPL-RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA   72 (168)
T ss_dssp             GGGHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH
T ss_pred             cccHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhc
Confidence            456678888999999999977 68999999999999999999999999999999 77889999999988765

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=1.1e-12  Score=87.82  Aligned_cols=70  Identities=16%  Similarity=0.123  Sum_probs=62.6

Q ss_pred             CCchhhhhcccccchhhhhhh---hhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVW---NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~---~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +|+++|+.++++..|||.+++   +....+++++|||+|+ |.+|.+++|+++.+|+ +|+++.+++++.+++++
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~-~Vi~~t~s~~k~~~~~~   74 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKS   74 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHH
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHH
Confidence            578999999999999987654   4566789999999977 9999999999999999 99999999999999875

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.27  E-value=3.3e-12  Score=97.98  Aligned_cols=70  Identities=26%  Similarity=0.422  Sum_probs=65.0

Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      +++++||++++++.|||+++ ...++++|++|||+|+|++|++++++++..|+ +|++++.+++|++.++++
T Consensus         1 ls~eeAA~l~~~~~Ta~~al-~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~~   70 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKAL-KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKEL   70 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhhc
Confidence            57899999999999999976 67889999999999999999999999999999 899999999999988764

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.25  E-value=2.3e-12  Score=100.26  Aligned_cols=68  Identities=22%  Similarity=0.272  Sum_probs=62.9

Q ss_pred             hhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      ++||+++++++|||+++++..++++|++|||+|+ |++|++++|+|+.+|+ ++++++++++|.+.++++
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~~   69 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRL   69 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTT
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeecccccccccccc
Confidence            4789999999999999999999999999999987 9999999999999999 999999999999988764

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.23  E-value=2.2e-12  Score=100.37  Aligned_cols=70  Identities=17%  Similarity=0.037  Sum_probs=63.1

Q ss_pred             CCchhhhhcccccchhhhhh---hhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAV---WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~---~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++++||.+++++.|||+++   .+....++|++|||+|+ |++|.+++|+++.+|+ +|+++.++++|.+++++
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~   74 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRV   74 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHH
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHh
Confidence            57899999999999999654   45678899999999987 9999999999999999 99999999999988865

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.21  E-value=1.3e-11  Score=95.07  Aligned_cols=71  Identities=24%  Similarity=0.347  Sum_probs=65.5

Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      +++.+||.++|++.|||+++ ++.++++|++|||+|+ |++|++++++++++|..+|++++.+++|+++++++
T Consensus         1 l~~~eAA~l~c~~~Ta~~al-~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~   72 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA   72 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc
Confidence            57899999999999999976 7789999999999996 99999999999999988999999999999998753

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.20  E-value=1.1e-11  Score=95.41  Aligned_cols=69  Identities=30%  Similarity=0.417  Sum_probs=61.6

Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      +|+++||.+. ++++||+++ .+.++++|++|||+|+|++|++++|+++++|+ +|++++++++|+++++++
T Consensus         1 VS~e~Aal~e-Pla~a~~a~-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~   69 (170)
T d1e3ja2           1 VSLEEGALLE-PLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNC   69 (170)
T ss_dssp             SCHHHHHTHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT
T ss_pred             CCHHHHHHHH-HHHHHHHHH-HHhCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHc
Confidence            4678888764 677899976 77899999999999999999999999999999 999999999999998764

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.2e-11  Score=95.45  Aligned_cols=70  Identities=24%  Similarity=0.362  Sum_probs=62.6

Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      +++++||.+. ++++||+++ ++.++++|++|+|+|+|++|++++++++++|+++|++++++++|+++++++
T Consensus         1 vS~e~Aal~e-pla~a~~a~-~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~   70 (171)
T d1pl8a2           1 VTFEEGALIE-PLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI   70 (171)
T ss_dssp             SCHHHHHHHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             CCHHHHHHHH-HHHHHHHHH-HHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh
Confidence            4678888764 678899976 788999999999999999999999999999998999999999999998764

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.18  E-value=1.7e-11  Score=94.59  Aligned_cols=70  Identities=26%  Similarity=0.302  Sum_probs=63.5

Q ss_pred             chhhhhcccccchhhhhhhhhc-CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          169 LDKVCLLGCGVPTGLGAVWNTA-KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       169 ~~~aa~l~~~~~ta~~~~~~~~-~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      +.++|.+++++.|||+++.+.. .+++|++|||+|+|++|++++|+++++|+.+|++++++++|+++++++
T Consensus         6 l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~   76 (172)
T d1h2ba2           6 LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL   76 (172)
T ss_dssp             HHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT
T ss_pred             HHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc
Confidence            4688999999999999987655 489999999999999999999999999988999999999999998764

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.15  E-value=2.6e-11  Score=94.36  Aligned_cols=64  Identities=25%  Similarity=0.215  Sum_probs=58.8

Q ss_pred             hhcccccchhhhhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          173 CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       173 a~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +++.++++|||+++.+..++++|++|||+|+ |.+|++++|+++..|+ +||+++++++|.+++++
T Consensus         8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~   72 (182)
T d1v3va2           8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQ   72 (182)
T ss_dssp             TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHh
Confidence            4567788999999999999999999999988 9999999999999999 99999999999888765

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.13  E-value=4.7e-11  Score=94.16  Aligned_cols=68  Identities=38%  Similarity=0.460  Sum_probs=62.2

Q ss_pred             hhhhhcccccchhhhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       170 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      ++.+.+..++.|||+++ .++++++|++|||+|+|++|++++++++.+|+.+|++++.+++|+++++++
T Consensus         2 ~d~~~l~d~~~ta~~a~-~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2           2 RDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             HHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             chHHhcccHHHHHHHHH-HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc
Confidence            45677788999999986 789999999999999999999999999999998999999999999998764

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.12  E-value=4e-11  Score=93.95  Aligned_cols=64  Identities=16%  Similarity=0.100  Sum_probs=56.6

Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCCCEEEEE-cC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF-GL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~-G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      +++++||+++++++|||+++.+..++++|+++||+ |+ |++|++++|+||++|+ +||++.+++++
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~   66 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPN   66 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTT
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccc
Confidence            57899999999999999999899999999999887 55 9999999999999999 77777655443

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=6.7e-11  Score=91.85  Aligned_cols=70  Identities=16%  Similarity=0.123  Sum_probs=59.6

Q ss_pred             CCchhhhhcccccchhhhhhh---hhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVW---NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~---~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +|+.+|+.++++..|||++++   .....+++++|||+|+ |++|.+++|+||.+|+ +||+++++++|.+.+++
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~~   74 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKS   74 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHH
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHHh
Confidence            578999999999999997653   3344556679999977 9999999999999999 89999999999887764

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=1.8e-10  Score=89.95  Aligned_cols=68  Identities=24%  Similarity=0.189  Sum_probs=56.2

Q ss_pred             CCchhhhhcccccchhhhhhhhhcCCCCC--CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPG--SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g--~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      +++.+.+ ++++..|||+++.+..++++|  ++|||+|+ |++|++++|+||.+|+++|+++++++++...+
T Consensus         2 ~~~~~ga-lg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l   72 (187)
T d1vj1a2           2 LSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFL   72 (187)
T ss_dssp             GGGGGTT-TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHH
T ss_pred             ccHHHHH-hhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhh
Confidence            4555544 566899999999999999987  89999986 99999999999999997788777777665544

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=98.75  E-value=2.6e-09  Score=81.88  Aligned_cols=58  Identities=17%  Similarity=-0.005  Sum_probs=48.7

Q ss_pred             cchhh---hhhhhhcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          179 VPTGL---GAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       179 ~~ta~---~~~~~~~~~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ..|||   +++.+....+++++|||+|+ |++|.+++|+||.+|+ +||++.++++|.+.+++
T Consensus         5 GlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~   66 (167)
T d1tt7a2           5 GFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQ   66 (167)
T ss_dssp             HHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHh
Confidence            34555   44555666778889999987 9999999999999999 99999999999988864

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.08  E-value=0.00055  Score=51.94  Aligned_cols=44  Identities=32%  Similarity=0.416  Sum_probs=40.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      +..+|+|+|+|..|+.|+..|+.+|+ .|.++|.+.++++.+++.
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l   71 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESL   71 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHT
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHh
Confidence            45789999999999999999999999 999999999998888754

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.04  E-value=0.00046  Score=51.65  Aligned_cols=52  Identities=17%  Similarity=0.084  Sum_probs=44.8

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++......++.+|||+|+|+.+.+++..++..|++++.++.++.+|.+.+.+
T Consensus         8 ~l~~~~~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~   59 (167)
T d1npya1           8 LIEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAA   59 (167)
T ss_dssp             HHHHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHH
T ss_pred             HHHHcCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHH
Confidence            4466667778999999999999999999999999899999999998776643

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.97  E-value=0.0006  Score=51.00  Aligned_cols=44  Identities=27%  Similarity=0.246  Sum_probs=39.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhhc
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFWS  238 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~~  238 (239)
                      +..+|+|+|+|..|+.|+..|+.+|+ .|.++|.+.++++.++..
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~   74 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETL   74 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHh
Confidence            45799999999999999999999999 999999999999877643

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.0025  Score=47.46  Aligned_cols=51  Identities=12%  Similarity=0.048  Sum_probs=41.8

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +....-..+|++|||+|+|+.+.+++..+..+|+ +++++.++.+|.+.+.+
T Consensus         9 l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~nRt~~ka~~l~~   59 (170)
T d1nyta1           9 LERLSFIRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAK   59 (170)
T ss_dssp             HHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHH
T ss_pred             HHHcCCCCCCCEEEEECCcHHHHHHHHHhcccce-EEEeccchHHHHHHHHH
Confidence            4333334678999999999999999999999998 79999999988776654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.54  E-value=0.0017  Score=49.28  Aligned_cols=45  Identities=22%  Similarity=0.136  Sum_probs=39.8

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       192 ~~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      --.|+++||+|+ |++|...++.+...|+ +|+.+++++++.+.+.+
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~   65 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAAD   65 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHH
Confidence            458899999987 9999999999999998 99999999998876654

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=95.98  E-value=0.0076  Score=44.35  Aligned_cols=49  Identities=18%  Similarity=0.133  Sum_probs=40.8

Q ss_pred             hhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       188 ~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ....--.+.++||+|+|.+|.+.++.+...|++.++++.++.+|.+.+.
T Consensus        17 ~~~~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~   65 (159)
T d1gpja2          17 RELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELA   65 (159)
T ss_dssp             HHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHH
T ss_pred             HHhCCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHH
Confidence            3334457889999999999999999999999988999999988866443

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.87  E-value=0.0043  Score=41.30  Aligned_cols=36  Identities=28%  Similarity=0.343  Sum_probs=32.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      .|++|+|+|.|..|+.+++++...|+ +|++.|.+++
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~~~   39 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRMT   39 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESSSS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCCcC
Confidence            46789999999999999999999998 9999998653

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=95.83  E-value=0.0075  Score=48.50  Aligned_cols=42  Identities=12%  Similarity=0.116  Sum_probs=37.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      +|+++||+|+ +++|.+.+..+...|+ +|+.+++++++++.+.
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~   66 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATA   66 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHH
Confidence            6799999987 9999999999999999 9999999998866543

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=95.83  E-value=0.013  Score=43.74  Aligned_cols=43  Identities=16%  Similarity=0.291  Sum_probs=37.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRE  235 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~  235 (239)
                      -.+.+|||+|+|+.+.+++..+...|++.++++.+++++.+.+
T Consensus        16 l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~   58 (182)
T d1vi2a1          16 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKA   58 (182)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHH
Confidence            4678999999999999999999999999999999988766543

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.61  E-value=0.009  Score=41.27  Aligned_cols=34  Identities=29%  Similarity=0.431  Sum_probs=31.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      .+|.|+|+|.+|.+.++.++.+|+ ++++.+.+++
T Consensus        12 ~kigIlGgGQL~rMla~aA~~lG~-~v~v~d~~~~   45 (111)
T d1kjqa2          12 TRVMLLGSGELGKEVAIECQRLGV-EVIAVDRYAD   45 (111)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTTC-EEEEEESSTT
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcCCCC
Confidence            569999999999999999999999 9999998765

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=95.53  E-value=0.011  Score=43.96  Aligned_cols=46  Identities=15%  Similarity=0.047  Sum_probs=38.0

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       191 ~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ...++.+|+|+|+|+.+.+++..+...+ .+++++.++.+|.+.+.+
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~aL~~~~-~~i~I~nR~~~~a~~l~~   59 (171)
T d1p77a1          14 WLRPNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANRTFSKTKELAE   59 (171)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHcccC-ceeeeccchHHHHHHHHH
Confidence            3457889999999999999888887655 599999999988776644

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.01  E-value=0.0099  Score=38.36  Aligned_cols=34  Identities=24%  Similarity=0.440  Sum_probs=30.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      ++|.|+|+|.+|.+.++.++.+|+ ++++++.+++
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~-~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGI-AVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTE-EEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-EEEEEcCCCC
Confidence            478999999999999999999999 8888887654

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=94.82  E-value=0.03  Score=42.70  Aligned_cols=43  Identities=35%  Similarity=0.440  Sum_probs=38.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      -.|.+|+|.|-|.+|..+++++...|+ +|++++.+.++++.+.
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~Ga-kvvv~d~d~~~~~~~~   67 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAV   67 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEecchHHHHHHHH
Confidence            478999999999999999999999998 9999999888776654

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.43  E-value=0.023  Score=42.18  Aligned_cols=49  Identities=14%  Similarity=0.074  Sum_probs=36.8

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      +.....--++++|||+|+|+.+.+++..+.  +..++.++.++.+|.+.+.
T Consensus         9 l~~~~~~~~~k~vlIlGaGG~arai~~aL~--~~~~i~I~nR~~~ka~~l~   57 (177)
T d1nvta1           9 LEEEIGRVKDKNIVIYGAGGAARAVAFELA--KDNNIIIANRTVEKAEALA   57 (177)
T ss_dssp             HHHHHCCCCSCEEEEECCSHHHHHHHHHHT--SSSEEEEECSSHHHHHHHH
T ss_pred             HHHhCCCcCCCEEEEECCcHHHHHHHHHHc--cccceeeehhhhhHHHHHH
Confidence            333333457899999999999998877764  3448999999988877654

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=94.29  E-value=0.032  Score=41.73  Aligned_cols=38  Identities=34%  Similarity=0.369  Sum_probs=33.7

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       191 ~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .....++|+|+|+|+.|+.|+..+...|. +|++++.++
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~   76 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHS   76 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccC
Confidence            34556899999999999999999999999 999998875

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.28  E-value=0.063  Score=36.76  Aligned_cols=44  Identities=23%  Similarity=0.221  Sum_probs=36.8

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      +.+.....++++++|.|+|.+|+=.+..++..|. .+.++.+.+.
T Consensus        13 ~~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~-~vt~i~~~~~   56 (121)
T d1mo9a2          13 LVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGR-RTVMLVRTEP   56 (121)
T ss_dssp             HHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCT
T ss_pred             HHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcch-hheEeeccch
Confidence            3345566788999999999999999999999998 8888887763

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=93.84  E-value=0.048  Score=42.38  Aligned_cols=43  Identities=26%  Similarity=0.401  Sum_probs=38.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      -.|.+|+|.|-|.+|..+++++...|+ ++++++.+..+++.+.
T Consensus        37 l~g~~v~IqG~GnVG~~~a~~L~~~Ga-kvv~~d~~~~~~~~~~   79 (230)
T d1leha1          37 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAV   79 (230)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEeecccHHHHHHHH
Confidence            578999999999999999999999999 9999998888776654

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.76  E-value=0.041  Score=43.54  Aligned_cols=41  Identities=20%  Similarity=0.229  Sum_probs=33.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC-hhhHhhh
Q 026414          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID-PKKFDRE  235 (239)
Q Consensus       194 ~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~~-~~~~~~~  235 (239)
                      +|+++||+|+ +++|.+.++.+...|+ +|++++++ +++++.+
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~   59 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEV   59 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHH
Confidence            5799999988 9999999999999999 88887665 4444433

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.45  E-value=0.062  Score=41.22  Aligned_cols=39  Identities=23%  Similarity=0.219  Sum_probs=33.9

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       191 ~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      ..+..++|+|+|+|+.|+.++..++..|+ .|++++.+++
T Consensus        45 ~~~~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~~~~   83 (233)
T d1djqa3          45 QTKNKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAEK   83 (233)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             cccCCceEEEEcccHHHHHHHHHHHHhcc-ceeeEeeccc
Confidence            34577899999999999999999999999 8999987663

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.45  E-value=0.12  Score=37.81  Aligned_cols=47  Identities=32%  Similarity=0.512  Sum_probs=39.5

Q ss_pred             hhhhhhcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          184 GAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       184 ~~~~~~~~-~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      .++.+..+ .-.|++++|.|-|-+|...++.++.+|+ +|++++..+.+
T Consensus        12 ~~~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~-~V~v~e~dp~~   59 (163)
T d1li4a1          12 DGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGA-RVIITEIDPIN   59 (163)
T ss_dssp             HHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHH
T ss_pred             HHHHHHhCceecCCEEEEeccccccHHHHHHHHhCCC-eeEeeecccch
Confidence            33444333 5689999999999999999999999999 99999998855

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=93.33  E-value=0.053  Score=42.72  Aligned_cols=37  Identities=24%  Similarity=0.315  Sum_probs=31.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .....+|+|+|+|..|+.++..+...|. +|++++.++
T Consensus        27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~~   63 (370)
T d2iida1          27 TSNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASE   63 (370)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            3455799999999999999998888998 999998764

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.28  E-value=0.063  Score=36.53  Aligned_cols=35  Identities=23%  Similarity=0.096  Sum_probs=30.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .|.+|||.|+|.+|..-++.+...|+ .|++++...
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~~~   45 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTF   45 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            47899999999999999999999999 777776544

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.11  E-value=0.11  Score=35.84  Aligned_cols=41  Identities=32%  Similarity=0.347  Sum_probs=34.1

Q ss_pred             hhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       188 ~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      ....-+.+.+++|.|+|.+|+-+++.+..+|. +|.++.+.+
T Consensus        23 ~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~-~Vtlie~~~   63 (123)
T d1nhpa2          23 QKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILD   63 (123)
T ss_dssp             HHHTCTTCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             HHhhccCCCEEEEECChHHHHHHHHHhhccce-EEEEEEecC
Confidence            33344567899999999999999999999998 888887765

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=92.76  E-value=0.11  Score=35.81  Aligned_cols=38  Identities=32%  Similarity=0.588  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      ++++++++|.|+|.+|.=++..++.+|. +|..+.+++.
T Consensus        27 ~~~~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~~   64 (121)
T d1d7ya2          27 LRPQSRLLIVGGGVIGLELAATARTAGV-HVSLVETQPR   64 (121)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             hhcCCeEEEECcchhHHHHHHHhhcccc-eEEEEeeccc
Confidence            4677999999999999999999999998 8998887764

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=92.74  E-value=0.11  Score=35.69  Aligned_cols=38  Identities=11%  Similarity=0.181  Sum_probs=32.7

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       191 ~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .++..++|+|.|+|.+|+=.+..+..+|. +|.++.+.+
T Consensus        18 ~l~~p~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~   55 (117)
T d1onfa2          18 NIKESKKIGIVGSGYIAVELINVIKRLGI-DSYIFARGN   55 (117)
T ss_dssp             TCCCCSEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSS
T ss_pred             ccCCCCEEEEECCchHHHHHHHHHHhccc-cceeeehhc
Confidence            34456899999999999999999999998 899998765

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.63  E-value=0.11  Score=35.34  Aligned_cols=34  Identities=18%  Similarity=0.296  Sum_probs=30.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      ++++|+|+|.+|+=+++.+..+|. +|.++.+.+.
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~-~Vtlve~~~~   56 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGT-KVTILEGAGE   56 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             CeEEEECCCccceeeeeeeccccc-EEEEEEecce
Confidence            789999999999999999999998 8888887764

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.51  E-value=0.12  Score=39.21  Aligned_cols=51  Identities=20%  Similarity=0.226  Sum_probs=41.2

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~-~~vv~~~~~~~~~~~~~~  237 (239)
                      +....++++|++||-+|+|. |..++.+++..|. ..|++++.+++..+.+++
T Consensus        67 ~l~~l~l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~  118 (213)
T d1dl5a1          67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR  118 (213)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred             HHHhhhccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhh
Confidence            55778899999999998866 7777788887762 389999999988877754

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.26  E-value=0.15  Score=35.74  Aligned_cols=39  Identities=28%  Similarity=0.358  Sum_probs=34.2

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       191 ~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      .++++.+++|+|+|.+|+=++..++.+|. .|.++.+.+.
T Consensus        31 ~~~~~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~~~   69 (133)
T d1q1ra2          31 QLIADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAAR   69 (133)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             hhccCCEEEEECCchHHHHHHHHHHhhCc-ceeeeeeccc
Confidence            34567899999999999999999999998 8999988764

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=92.01  E-value=0.13  Score=35.07  Aligned_cols=33  Identities=24%  Similarity=0.328  Sum_probs=30.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      ++++|.|+|.+|+=+++.++.+|. +|.++.+.+
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~~   54 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGA-KTHLFEMFD   54 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CEEEEECCChhhHHHHHHhhcccc-EEEEEeecc
Confidence            689999999999999999999998 899998876

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.96  E-value=0.26  Score=40.01  Aligned_cols=51  Identities=25%  Similarity=0.343  Sum_probs=41.2

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~-~~vv~~~~~~~~~~~~~~  237 (239)
                      +....+++||++||=.|.|. |.+++.+|++.|. .+|+.++.+++..+.|++
T Consensus        90 Il~~l~i~pG~rVLE~GtGs-G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~  141 (324)
T d2b25a1          90 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKK  141 (324)
T ss_dssp             HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEecccc-cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHH
Confidence            56778999999998887754 7777788888763 389999999998888764

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=91.92  E-value=0.12  Score=38.91  Aligned_cols=36  Identities=31%  Similarity=0.431  Sum_probs=32.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      .|.+|.|+|-|.+|...++.++.+|+ +|++.++..+
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~-~V~~~d~~~~   77 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRN   77 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             cCCeEEEecccccchhHHHhHhhhcc-cccccCcccc
Confidence            57899999999999999999999999 9999987654

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=91.53  E-value=0.13  Score=38.11  Aligned_cols=36  Identities=44%  Similarity=0.637  Sum_probs=33.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      .|.+|.|+|.|.+|...+++++.+|+ +|++.++...
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~~   76 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPK   76 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             cCceEEEeccccccccceeeeecccc-cccccccccc
Confidence            57899999999999999999999999 9999988753

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=91.49  E-value=0.095  Score=38.27  Aligned_cols=48  Identities=25%  Similarity=0.389  Sum_probs=37.1

Q ss_pred             hhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       187 ~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +....+++|.+||..|.|. |..+..+|+ .|+ .|+++|.+++-++.+++
T Consensus        13 ~~~l~~~~~~rvLd~GCG~-G~~a~~la~-~G~-~V~gvD~S~~~i~~a~~   60 (201)
T d1pjza_          13 WSSLNVVPGARVLVPLCGK-SQDMSWLSG-QGY-HVVGAELSEAAVERYFT   60 (201)
T ss_dssp             HHHHCCCTTCEEEETTTCC-SHHHHHHHH-HCC-EEEEEEECHHHHHHHHH
T ss_pred             HHHcCCCCCCEEEEecCcC-CHHHHHHHH-cCC-ceEeecccHHHHHHHHH
Confidence            4455789999999997743 356667775 598 99999999988887764

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.48  E-value=0.18  Score=34.42  Aligned_cols=34  Identities=24%  Similarity=0.319  Sum_probs=29.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .++++|+|+|.+|+=.++++..+|. +|.++..++
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~-~Vtiv~~~~   55 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGA-EVTVLEAMD   55 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-ceEEEEeec
Confidence            3889999999999999999999998 788877665

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=91.47  E-value=0.12  Score=39.09  Aligned_cols=36  Identities=33%  Similarity=0.421  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++...
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~   79 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPYPM   79 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             cceeeeeeecccccccccccccccce-eeeccCCccc
Confidence            46899999999999999999999999 9999987654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.46  E-value=0.16  Score=35.03  Aligned_cols=33  Identities=21%  Similarity=0.470  Sum_probs=30.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      ++++|+|+|.+|+=.++++..+|. +|.++.+++
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~~~   56 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEFQP   56 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCc-ceeEEEecc
Confidence            689999999999999999999998 999888766

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.30  E-value=0.18  Score=34.20  Aligned_cols=34  Identities=24%  Similarity=0.381  Sum_probs=30.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      ++++|.|+|.+|+-+++.++.+|. .|.++.+.+.
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~~~~   55 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGA-QVSVVEARER   55 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhccc-ceEEEeeecc
Confidence            789999999999999999999998 8999887763

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.10  E-value=0.18  Score=34.80  Aligned_cols=33  Identities=15%  Similarity=0.152  Sum_probs=30.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      ++++|.|+|.+|+=++..++.+|. +|+++.+++
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGS-KTSLMIRHD   55 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCc-EEEEEeecc
Confidence            689999999999999999999998 899998876

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=91.10  E-value=0.19  Score=34.81  Aligned_cols=35  Identities=17%  Similarity=0.280  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      ..++++|+|+|.+|+=.+++++.+|. +|.++...+
T Consensus        25 ~p~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~~~   59 (125)
T d1ojta2          25 VPGKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEMMD   59 (125)
T ss_dssp             CCSEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             cCCeEEEECCCHHHHHHHHHhhcCCC-EEEEEEeec
Confidence            34899999999999999999999998 888887766

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.02  E-value=0.1  Score=37.26  Aligned_cols=34  Identities=18%  Similarity=0.211  Sum_probs=30.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI  227 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~  227 (239)
                      -.|.+|||+|+|.+|.--+..+...|+ +|++++.
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVvap   44 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSP   44 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            478999999999999999999999999 8888853

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=90.90  E-value=0.14  Score=40.09  Aligned_cols=51  Identities=14%  Similarity=0.194  Sum_probs=37.3

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~-~~vv~~~~~~~~~~~~~~  237 (239)
                      +....+++||++||=.|+|. |.++..+|++.|. .+|+.++.+++..+.+++
T Consensus        77 Ii~~l~i~pG~rVLEiG~Gs-G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~  128 (250)
T d1yb2a1          77 IIMRCGLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMD  128 (250)
T ss_dssp             ----CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHH
T ss_pred             HHHHcCCCCcCEEEEeeeeC-cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH
Confidence            45678999999999987744 5556677777652 389999999998888765

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=90.82  E-value=0.2  Score=37.55  Aligned_cols=37  Identities=41%  Similarity=0.420  Sum_probs=33.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.++...
T Consensus        47 L~gktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~   83 (193)
T d1mx3a1          47 IRGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLS   83 (193)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSC
T ss_pred             eeCceEEEeccccccccceeeeecccc-ceeeccCccc
Confidence            467899999999999999999999999 9999987643

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.17  E-value=0.18  Score=34.71  Aligned_cols=36  Identities=19%  Similarity=0.307  Sum_probs=32.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      .++++|+|+|.+|+=+++++..+|. +|.++.+++.-
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~~~~~   60 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEFASEI   60 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTC-EEEEECSSSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCC-eEEEEEEcccc
Confidence            4789999999999999999999998 99999887743

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.68  E-value=0.24  Score=34.03  Aligned_cols=32  Identities=22%  Similarity=0.098  Sum_probs=27.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (239)
Q Consensus       196 ~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~  228 (239)
                      ++++|+|+|.+|+=.+++++.+|. +|.++.++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGL-DVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCC-eEEEEEec
Confidence            578899999999999999999998 67777654

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.54  E-value=0.33  Score=35.87  Aligned_cols=38  Identities=37%  Similarity=0.412  Sum_probs=33.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      -.+.++.|+|.|.+|...++.++..|+ +|++.++...+
T Consensus        42 l~~k~vgiiG~G~IG~~va~~~~~fg~-~v~~~d~~~~~   79 (184)
T d1ygya1          42 IFGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPYVSP   79 (184)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCH
T ss_pred             ccceeeeeccccchhHHHHHHhhhccc-eEEeecCCCCh
Confidence            357899999999999999999999998 99999876544

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.36  E-value=0.29  Score=33.48  Aligned_cols=37  Identities=27%  Similarity=0.290  Sum_probs=31.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      +.+.+++|.|+|.+|+=++..+..+|. +|.++.+++.
T Consensus        30 ~~~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~~   66 (122)
T d1xhca2          30 ENSGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRGAM   66 (122)
T ss_dssp             HHHSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSSSC
T ss_pred             hcCCcEEEECCcHHHHHHHHHhhcccc-eEEEEecccc
Confidence            345789999999999999999999998 8888887653

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.32  E-value=0.37  Score=34.51  Aligned_cols=37  Identities=27%  Similarity=0.271  Sum_probs=31.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .-+++|+|+|+|.+|.=++..+...|++.|+++.+.+
T Consensus        43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            3467899999999999999999999998888887654

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=89.09  E-value=0.39  Score=36.78  Aligned_cols=49  Identities=20%  Similarity=0.312  Sum_probs=37.8

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++...++++|++||-+|+| .|..++.+++. +. +|+.++.+++..+.+++
T Consensus        62 ml~~L~l~~g~~VLdIG~G-sGy~ta~La~l-~~-~V~aiE~~~~~~~~A~~  110 (224)
T d1vbfa_          62 MLDELDLHKGQKVLEIGTG-IGYYTALIAEI-VD-KVVSVEINEKMYNYASK  110 (224)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEEESCHHHHHHHHH
T ss_pred             HHHHhhhcccceEEEecCC-CCHHHHHHHHH-hc-ccccccccHHHHHHHHH
Confidence            4567789999999999885 35566667765 43 89999999988877754

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=89.02  E-value=0.25  Score=38.34  Aligned_cols=35  Identities=34%  Similarity=0.388  Sum_probs=30.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI  227 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~  227 (239)
                      --.|.+|+|.|-|.+|..+++++...|+ +|++++.
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Ga-kvv~vsD   62 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWLEKMGA-KVIAVSD   62 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEEC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEeec
Confidence            3578999999999999999999999999 7776664

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.98  E-value=0.33  Score=38.58  Aligned_cols=51  Identities=14%  Similarity=0.259  Sum_probs=41.2

Q ss_pred             hhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          185 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       185 ~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      .+..+.++++|++||=+|.|- |..++.+++..|+ +|+++..+++..+.+++
T Consensus        53 ~~~~~l~l~~G~~VLDiGCG~-G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~  103 (285)
T d1kpga_          53 LALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQ  103 (285)
T ss_dssp             HHHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHHHcCCCCCCEEEEecCcc-hHHHHHHHhcCCc-ceEEEeccHHHHHHHHH
Confidence            356888999999999998742 4556678888898 99999999988877754

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=88.51  E-value=0.37  Score=37.03  Aligned_cols=36  Identities=31%  Similarity=0.449  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .+.+|+|+|+|++|..++..+..+|..+++.+|.+.
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            457999999999999999999999999999998655

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.45  E-value=0.3  Score=37.18  Aligned_cols=49  Identities=20%  Similarity=0.258  Sum_probs=37.0

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~  236 (239)
                      ++...++++|++||.+|+|. |..++.+++..|. .|+.++.+++-.+.++
T Consensus        70 ml~~L~l~~g~~VLeIGsGs-GY~taila~l~g~-~V~~ie~~~~l~~~a~  118 (215)
T d1jg1a_          70 MLEIANLKPGMNILEVGTGS-GWNAALISEIVKT-DVYTIERIPELVEFAK  118 (215)
T ss_dssp             HHHHHTCCTTCCEEEECCTT-SHHHHHHHHHHCS-CEEEEESCHHHHHHHH
T ss_pred             HHHhhccCccceEEEecCCC-ChhHHHHHHhhCc-eeEEEeccHHHHHHHH
Confidence            55677899999999997743 5555666666674 7999999987666654

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=88.29  E-value=0.4  Score=37.68  Aligned_cols=51  Identities=20%  Similarity=0.187  Sum_probs=41.5

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~-~~vv~~~~~~~~~~~~~~  237 (239)
                      +....++++|++||=.|+|. |.+++.+|+..|. .+|+.++.+++..+.+++
T Consensus        95 Ii~~l~i~pG~~VLDiG~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~  146 (266)
T d1o54a_          95 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAES  146 (266)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEECCCCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Confidence            56788999999999988755 5666778888752 389999999999888865

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=87.75  E-value=0.57  Score=33.96  Aligned_cols=45  Identities=36%  Similarity=0.524  Sum_probs=38.4

Q ss_pred             hhhhcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          186 VWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       186 ~~~~~~-~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      +.+..+ .-.|++++|.|=|-+|...++-++.+|+ +|++++.++-|
T Consensus        13 i~r~t~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga-~V~V~E~DPi~   58 (163)
T d1v8ba1          13 LMRATDFLISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPIC   58 (163)
T ss_dssp             HHHHHCCCCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHH
T ss_pred             HHHHhCceecCCEEEEecccccchhHHHHHHhCCC-EEEEEecCchh
Confidence            334433 5689999999999999999999999999 99999998854

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.22  E-value=0.63  Score=33.00  Aligned_cols=41  Identities=29%  Similarity=0.353  Sum_probs=33.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChhhHh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFD  233 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G-~~~vv~~~~~~~~~~  233 (239)
                      +.+.+|.|+|+|.+|...+..+...| ++.++.+|.++++.+
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~   45 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAI   45 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecccccc
Confidence            45678999999999998888887777 467999999988743

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.20  E-value=0.37  Score=38.45  Aligned_cols=44  Identities=27%  Similarity=0.453  Sum_probs=30.8

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~  231 (239)
                      +.......++++||-+|+| .|.+++.+|+ .|+++|++++.++.-
T Consensus        27 i~~~~~~~~~~~VLDiGcG-~G~lsl~aa~-~Ga~~V~aid~s~~~   70 (311)
T d2fyta1          27 IYQNPHIFKDKVVLDVGCG-TGILSMFAAK-AGAKKVLGVDQSEIL   70 (311)
T ss_dssp             HHHCGGGTTTCEEEEETCT-TSHHHHHHHH-TTCSEEEEEESSTHH
T ss_pred             HHhccccCCcCEEEEECCC-CCHHHHHHHH-cCCCEEEEEeCHHHH
Confidence            3344456789999999875 4445555554 587799999988753

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.66  E-value=0.44  Score=38.03  Aligned_cols=34  Identities=26%  Similarity=0.328  Sum_probs=30.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI  227 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~  227 (239)
                      -.|.+|+|.|-|.+|..+++++...|+ +|++++.
T Consensus        34 L~gktvaIqGfGnVG~~~A~~L~e~Ga-kvv~vsD   67 (293)
T d1hwxa1          34 FGDKTFAVQGFGNVGLHSMRYLHRFGA-KCVAVGE   67 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEc
Confidence            367899999999999999999999999 7777753

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=86.48  E-value=0.57  Score=34.81  Aligned_cols=36  Identities=19%  Similarity=0.390  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      .|.++.|+|.|.+|...++.++..|+ ++++.++...
T Consensus        46 ~g~tvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~   81 (191)
T d1gdha1          46 DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRA   81 (191)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCC
T ss_pred             cccceEEeecccchHHHHHHHHhhcc-cccccccccc
Confidence            47999999999999999999999999 8999887543

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=85.47  E-value=0.64  Score=34.29  Aligned_cols=36  Identities=28%  Similarity=0.413  Sum_probs=32.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       194 ~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      .+.+|.|+|.|.+|...++.++..|+ +|++.++..+
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~   78 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLGM-YVYFYDIENK   78 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             cceEEEEeecccchhhhhhhcccccc-eEeecccccc
Confidence            57899999999999999999999999 9999987653

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.36  E-value=0.88  Score=34.49  Aligned_cols=45  Identities=29%  Similarity=0.406  Sum_probs=34.4

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChhhHhhhh
Q 026414          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDREF  236 (239)
Q Consensus       191 ~~~~g~~vlI~G~g~~g~~ai~~~~~~G-~~~vv~~~~~~~~~~~~~  236 (239)
                      ++++|++||-+|+|. |..++.+++..| ..+|+.++.+++-.+.++
T Consensus        73 ~l~~g~~VLdiG~Gs-Gy~ta~la~l~~~~g~V~~ie~~~~l~~~a~  118 (224)
T d1i1na_          73 QLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSV  118 (224)
T ss_dssp             TSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred             ccCCCCeEEEecCCC-CHHHHHHHHHhCCCceEEEEcCCHHHHHHHH
Confidence            789999999998743 555666777665 338999999998777664

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.24  E-value=0.39  Score=36.41  Aligned_cols=46  Identities=22%  Similarity=0.161  Sum_probs=35.1

Q ss_pred             hcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       189 ~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ....+++.+||..|.|. |..+..+++ .|+ .|+++|.+++-++.+++
T Consensus        40 ~l~~~~~~rvLd~GCG~-G~~a~~LA~-~G~-~V~gvD~S~~ai~~a~~   85 (229)
T d2bzga1          40 FLKGKSGLRVFFPLCGK-AVEMKWFAD-RGH-SVVGVEISELGIQEFFT   85 (229)
T ss_dssp             HHTTCCSCEEEETTCTT-CTHHHHHHH-TTC-EEEEECSCHHHHHHHHH
T ss_pred             hcCCCCCCEEEEeCCCC-cHHHHHHHh-CCC-cEEEEeCCHHHHHHHHH
Confidence            34578899999997754 556666664 698 99999999988776643

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.89  E-value=0.58  Score=37.29  Aligned_cols=34  Identities=21%  Similarity=0.366  Sum_probs=29.7

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 026414          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI  227 (239)
Q Consensus       193 ~~g~~vlI~G~-g~~g~~ai~~~~~~G~~~vv~~~~  227 (239)
                      ..-+++||+|+ |.+|...+..+...|. .|+++++
T Consensus        14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~-~V~~~d~   48 (341)
T d1sb8a_          14 AQPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDN   48 (341)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence            34478999988 9999999999999998 8999875

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=84.79  E-value=0.44  Score=37.84  Aligned_cols=34  Identities=41%  Similarity=0.568  Sum_probs=28.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       195 g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .--|||+|+|..|+.|+..+...|+ +|++++..+
T Consensus        19 ~~DVvVIGaG~aGl~AA~~aa~~G~-~V~vlEK~~   52 (317)
T d1qo8a2          19 TTQVLVVGAGSAGFNASLAAKKAGA-NVILVDKAP   52 (317)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHTC-CEEEECSSS
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            3457888999999999988888998 888887654

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=84.26  E-value=0.72  Score=33.97  Aligned_cols=36  Identities=19%  Similarity=0.141  Sum_probs=32.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       193 ~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      -.+.++.|+|.|.+|...++.++..|. +|+..++..
T Consensus        42 l~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~   77 (188)
T d2naca1          42 LEAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHR   77 (188)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSC
T ss_pred             ccccceeeccccccchhhhhhhhccCc-eEEEEeecc
Confidence            357899999999999999999999999 999998754

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=84.08  E-value=0.71  Score=35.98  Aligned_cols=34  Identities=26%  Similarity=0.424  Sum_probs=29.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID  226 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~  226 (239)
                      --.|.+|+|.|-|.+|..+++++...|+ +|+++.
T Consensus        33 ~l~g~~v~IQGfGnVG~~~a~~L~e~Ga-kvvavs   66 (255)
T d1bgva1          33 TLVGKTVALAGFGNVAWGAAKKLAELGA-KAVTLS   66 (255)
T ss_dssp             CSTTCEEEECCSSHHHHHHHHHHHHHTC-EEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEe
Confidence            3478999999999999999999999999 776654

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=83.99  E-value=1  Score=31.75  Aligned_cols=39  Identities=23%  Similarity=0.296  Sum_probs=31.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChhhHh
Q 026414          195 GSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFD  233 (239)
Q Consensus       195 g~~vlI~G~g~~g~~ai~~~~~~G-~~~vv~~~~~~~~~~  233 (239)
                      ..+|.|+|+|.+|...+..+...| +..++.+|.++++.+
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~   44 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTK   44 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhH
Confidence            458889999999998887777777 468999999887654

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=83.66  E-value=1.4  Score=31.65  Aligned_cols=41  Identities=27%  Similarity=0.424  Sum_probs=34.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChhhH
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKF  232 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G-~~~vv~~~~~~~~~  232 (239)
                      ..+..+|.|+|+|.+|...+..+...| ++.++.+|.++++.
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a   58 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKL   58 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHH
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchh
Confidence            345679999999999999999998888 57899999988765

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.34  E-value=0.44  Score=38.15  Aligned_cols=38  Identities=37%  Similarity=0.494  Sum_probs=28.3

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 026414          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (239)
Q Consensus       191 ~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~  230 (239)
                      ...+|++||-+|+|. |.+++.+++ .|+++|++++.++.
T Consensus        30 ~~~~~~~VLDiGcG~-G~ls~~aa~-~Ga~~V~avd~s~~   67 (316)
T d1oria_          30 HLFKDKVVLDVGSGT-GILCMFAAK-AGARKVIGIECSSI   67 (316)
T ss_dssp             HHHTTCEEEEETCTT-SHHHHHHHH-TTCSEEEEEECSTT
T ss_pred             ccCCcCEEEEEecCC-cHHHHHHHH-hCCCEEEEEcCcHH
Confidence            456889999998864 555655555 68779999998764

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=83.07  E-value=1.2  Score=31.22  Aligned_cols=47  Identities=19%  Similarity=0.082  Sum_probs=37.2

Q ss_pred             chhhhhhhhhcCCCCCCEEEEE--cCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          180 PTGLGAVWNTAKVEPGSIVAVF--GLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       180 ~ta~~~~~~~~~~~~g~~vlI~--G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      .|....+  ..+..++..++|+  |+|.+|+-+++++..+|. +|..+...+
T Consensus        26 ~t~~d~l--~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~-~Vtlv~~~~   74 (156)
T d1djqa2          26 LTPEQVM--DGKKKIGKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGVH   74 (156)
T ss_dssp             ECHHHHH--HTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             ECHHHHh--cCccccCCceEEEecCCChHHHHHHHHHHHcCC-eEEEEecCC
Confidence            3555533  4567788898887  779999999999999998 888887765

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=82.69  E-value=0.56  Score=37.16  Aligned_cols=32  Identities=44%  Similarity=0.662  Sum_probs=27.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 026414          197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       197 ~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~  229 (239)
                      -|+|+|+|..|+.++..+...|+ +|++++..+
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~-~V~llEk~~   56 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGA-KVILLEKEP   56 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTC-CEEEECSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            37888999999998888888998 899998654

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=82.64  E-value=1.2  Score=34.54  Aligned_cols=43  Identities=28%  Similarity=0.547  Sum_probs=32.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      .++|++||=.|.|. |.+++.++ ..|+ +|+++|.+++-++.+++
T Consensus       118 ~~~g~~VLDiGcGs-G~l~i~aa-~~g~-~V~gvDis~~av~~A~~  160 (254)
T d2nxca1         118 LRPGDKVLDLGTGS-GVLAIAAE-KLGG-KALGVDIDPMVLPQAEA  160 (254)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHH-HTTC-EEEEEESCGGGHHHHHH
T ss_pred             cCccCEEEEcccch-hHHHHHHH-hcCC-EEEEEECChHHHHHHHH
Confidence            67999998887753 55555544 4687 89999999998887764

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=82.61  E-value=0.91  Score=31.81  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=31.9

Q ss_pred             CEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCChhhHh
Q 026414          196 SIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (239)
Q Consensus       196 ~~vlI~G-~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~  233 (239)
                      .+|.|+| .|.+|...+..++..|+ .|.+.+++++...
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~~~~~~   47 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGY-PISILDREDWAVA   47 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTCGGGH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCC-CcEeccccccccc
Confidence            5888999 69999999999999999 9999998876543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=82.00  E-value=1.5  Score=33.16  Aligned_cols=53  Identities=19%  Similarity=0.283  Sum_probs=39.8

Q ss_pred             hhhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       183 ~~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +..+....++++|++||=+|.|. |..+..+++..|+ +|++++.+++-++.+++
T Consensus        22 ~~~l~~~~~l~pg~~VLDiGCG~-G~~~~~la~~~~~-~v~GvD~s~~~~~~ar~   74 (245)
T d1nkva_          22 YATLGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKR   74 (245)
T ss_dssp             HHHHHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCEEEEEcCCC-CHHHHHHHHhcCC-EEEEEecccchhhHHHH
Confidence            34466788999999998887633 2345567777887 99999999987776653

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=81.48  E-value=1.4  Score=33.47  Aligned_cols=45  Identities=24%  Similarity=0.270  Sum_probs=35.8

Q ss_pred             hhhhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026414          184 GAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (239)
Q Consensus       184 ~~~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~  228 (239)
                      .++......-...++++.|+|..|...+++....+.++++.+|+.
T Consensus        15 ~a~~~~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          15 NALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             HHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             HHHHHhCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            334333444566788999999999999999999999999999976

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=81.44  E-value=1.2  Score=34.52  Aligned_cols=50  Identities=18%  Similarity=0.096  Sum_probs=38.4

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      +.....++++++||=+|.| .|..+..+++..|+ +|++++.++..++.+++
T Consensus        59 l~~~~~l~~~~~vLDiGcG-~G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~  108 (282)
T d2o57a1          59 LAMTGVLQRQAKGLDLGAG-YGGAARFLVRKFGV-SIDCLNIAPVQNKRNEE  108 (282)
T ss_dssp             HHHTTCCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEeCCC-CcHHHhhhhccCCc-EEEEEeccchhhhhhhc
Confidence            4456788999999998875 34456667777788 99999999987776653

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=81.34  E-value=2.7  Score=31.61  Aligned_cols=47  Identities=23%  Similarity=0.392  Sum_probs=35.2

Q ss_pred             cCCCCCCEEEEEcC--CHHHHHHHHHHHHcCC---CeEEEEcCChhhHhhhh
Q 026414          190 AKVEPGSIVAVFGL--GTVGLAVAEGAKAAGA---SRVIGIDIDPKKFDREF  236 (239)
Q Consensus       190 ~~~~~g~~vlI~G~--g~~g~~ai~~~~~~G~---~~vv~~~~~~~~~~~~~  236 (239)
                      .++++|++||.+|+  |-...+..+++...|.   .+|+.++..++-.+.++
T Consensus        76 ~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~  127 (223)
T d1r18a_          76 DHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSK  127 (223)
T ss_dssp             TTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHH
T ss_pred             hccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHH
Confidence            37899999999976  5566666667766663   37999999887666554

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.01  E-value=1.6  Score=34.93  Aligned_cols=51  Identities=18%  Similarity=0.182  Sum_probs=41.2

Q ss_pred             hhhhcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHhhhhh
Q 026414          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDREFW  237 (239)
Q Consensus       186 ~~~~~~~~~g~~vlI~G~g~~g~~ai~~~~~~G~~~vv~~~~~~~~~~~~~~  237 (239)
                      ++...++++++++|=+|.| .|..+.++|+..++.++++++.+++..+.+++
T Consensus       143 ~~~~~~l~~~~~vlD~GcG-~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~  193 (328)
T d1nw3a_         143 MIDEIKMTDDDLFVDLGSG-VGQVVLQVAAATNCKHHYGVEKADIPAKYAET  193 (328)
T ss_dssp             HHHHSCCCTTCEEEEETCT-TSHHHHHHHHHCCCSEEEEEECSHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEcCCC-CCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Confidence            5678889999998888764 36666788888898789999999988777653

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=80.94  E-value=0.69  Score=35.86  Aligned_cols=32  Identities=31%  Similarity=0.370  Sum_probs=25.8

Q ss_pred             EEEEEcCCHHHHHHHHH-HHHcCCCeEEEEcCCh
Q 026414          197 IVAVFGLGTVGLAVAEG-AKAAGASRVIGIDIDP  229 (239)
Q Consensus       197 ~vlI~G~g~~g~~ai~~-~~~~G~~~vv~~~~~~  229 (239)
                      -|+|+|+|+.|+.++.. ++..|. +|++++.++
T Consensus        35 DViVIGaGpaGL~aA~~LA~~~G~-~V~vlE~~~   67 (278)
T d1rp0a1          35 DVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQSV   67 (278)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTS-CEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHccCC-eEEEEecCC
Confidence            38888999999987654 565799 999998765

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=80.25  E-value=1.5  Score=33.45  Aligned_cols=34  Identities=29%  Similarity=0.389  Sum_probs=28.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHH-HHcCCCeEEEEc
Q 026414          192 VEPGSIVAVFGLGTVGLAVAEGA-KAAGASRVIGID  226 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~ai~~~-~~~G~~~vv~~~  226 (239)
                      --++.+|+|.|.|.+|..+++++ +..|+ ++++++
T Consensus        28 ~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga-~vv~vs   62 (234)
T d1b26a1          28 DPKKATVAVQGFGNVGQFAALLISQELGS-KVVAVS   62 (234)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHHCC-EEEEEE
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCC-ceEEee
Confidence            34789999999999999988877 57898 777665

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=80.15  E-value=1.3  Score=28.79  Aligned_cols=37  Identities=24%  Similarity=0.355  Sum_probs=31.3

Q ss_pred             CCCCCEEEEEcCCHHHHHH-HHHHHHcCCCeEEEEcCCh
Q 026414          192 VEPGSIVAVFGLGTVGLAV-AEGAKAAGASRVIGIDIDP  229 (239)
Q Consensus       192 ~~~g~~vlI~G~g~~g~~a-i~~~~~~G~~~vv~~~~~~  229 (239)
                      .+...++.++|.|++|..+ +++++..|+ .|.+.|..+
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~   42 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIAD   42 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCC
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCC
Confidence            4556889899998888776 899999999 999999865