Citrus Sinensis ID: 026427

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MEIEVSKSSALSLDVERKRDEEKEKVRVKRKTLEAVLQQCQRALELLSNGFDEDDNDVGAVMSDEETSREGSSNQRIDREADELCDLLRSRVECPDFLDKLEYAQLSGPPNNIEGSSWDMVSDNDLWESGNIDLDREDYVLVSEEDIVDGIACFMAAYLLSLKQAKNLTPNQLQEALSKTFSVKKRKGKLRKAWDGSKVIYNVASWGATAVGIYQNPVILRAASKAFWTSCHVISKLL
Secondary Structure (PSIPRED)
cccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccccEEEEEccccccccccccccccEEEEccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccccHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccEEEEcccccccccccccccccEEEEcHHHHHHHHHHHHHHHHHHcHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MEIEVSKSSALSLDVERKRDEEKEKVRVKRKTLEAVLQQCQRALELLsngfdeddndvgavmsdeetsregssnqriDREADELCDLLRsrvecpdflDKLEYaqlsgppnniegsswdmvsdndlwesgnidldredyvlvSEEDIVDGIACFMAAYLLSLKQAKNLTPNQLQEALSKTFSVKKRKgklrkawdgskVIYNVASWgatavgiyqNPVILRAASKAFWTSCHVISKLL
Flexible Loop (DISEMBL)
meievskssalsldverkrdeekekvrvkrktlEAVLQQCQRALELlsngfdeddnDVGAVMsdeetsregssnqridrEADELCDLLRSRVECPDFLDKLEYAQlsgppnniegsswDMVSDNDLWESGNIDLDREDYVLVSEEDIVDGIACFMAAYLLSLKQAKNLTPNQLQEalsktfsvkkrkgklrkawdgskVIYNVASWGATAVGIYQNPVILRAASKAFWTSCHVISKLL
Low Complexity Region (SEG)
MEIEVSKSSALSLdverkrdeekekvrvkrkTLEAVLQQCQRALELLSNGFDEDDNDVGAVMSDEETSREGSSNQRIDREADELCDLLRSRVECPDFLDKLEYAQLSGPPNNIEGSSWDMVSDNDLWESGNIDLDREDYVLVSEEDIVDGIACFMAAYLLSLKQAKNLTPNQLQEALSKTFSVKKRKGKLRKAWDGSKVIYNVASWGATAVGIYQNPVILRAASKAFWTSCHVISKLL
Disordered region (IsUnstruct)
**********************************AVLQQCQRALELL************************************LCDLLRSRVECPDFLDKLEYAQL*********SSWDMVSDNDLWESGNIDLDREDYVLVSEEDIVDGIACFMAAYLLSLKQAKNLT***********FSV**RKGKLRKAWDGSKVIYNVASWGATAVGIYQNPVILRAASKAFWTSCHVIS***
Disordered Region (DISOPRED)
******************************KTLEAVLQQCQRALE**************************************LCDLLRSRVECPDFLDKLE**Q*******IEGSSWDMVSDNDLWESGNIDLDREDYVLVSEEDIVDGIACFMAAYLLSLKQA*****N****AL****S**KRKGKLRKAWDGSKVIYNVASWGATAVGIYQNPVILRAASKAFWTSCHVISKLL
Disordered Region (DISEMBL)
***************************VKRKTLEAVLQQCQRALELLSNGFDEDDNDVGAVM**************IDREADELCDLLRSRVECPDFLDKLEYAQLSGPPNNIEGSSWDMVSDNDLWESGNIDLDREDYVLVSEEDIVDGIACFMAAYLLSLKQAKNLTPNQLQEALSKTFSVKKRKGKLRKAWDGSKVIYNVASWGATAVGIYQNPVILRAASKAFWTSCHVISKLL
Disordered Region (DISPRO)
*******************DEEKEKVRVKRKTLEAVLQQCQRALELLSN****************************DREADELCDLLRSRVECPDFLDKLEYAQLSGPPNNIEGSSWDMVSDNDLWESGNIDLDREDYVLVSEEDIVDGIACFMAAYLLSLKQAKNLTPNQLQEALSKTFSVKKRKGKLRKAWDGSKVIYNVASWGATAVGIYQNPVILRAASKAFWTSCHVISKLL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEIEVSKSSALSLDVERKRDEExxxxxxxxxxxxxxxxxxxxxLELLSNGFDEDDNDVGAVMSDEETSREGSSNQRIDREADELCDLLRSRVECPDFLDKLEYAQLSGPPNNIEGSSWDMVSDNDLWESGNIDLDREDYVLVSEEDIVDGIACFMAAYLLSLKQAKNLTPNQLQEALSKTFSVKKRKGKLRKAWDGSKVIYNVASWGATAVGIYQNPVILRAASKAFWTSCHVISKLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
224067032	249	predicted protein [Populus trichocarpa]	0.995	0.951	0.668	7e-82
255545920	243	conserved hypothetical protein [Ricinus	0.991	0.971	0.697	4e-80
449461371	244	PREDICTED: uncharacterized protein LOC10	0.995	0.971	0.673	8e-79
225459123	240	PREDICTED: uncharacterized protein LOC10	0.987	0.979	0.699	2e-78
224081957	241	predicted protein [Populus trichocarpa]	0.987	0.975	0.688	5e-76
42568423	234	uncharacterized protein [Arabidopsis tha	0.911	0.927	0.644	4e-74
42573642	235	uncharacterized protein [Arabidopsis tha	0.911	0.923	0.645	4e-73
356515696	229	PREDICTED: uncharacterized protein LOC10	0.920	0.956	0.681	1e-72
359806272	226	uncharacterized protein LOC100790753 [Gl	0.899	0.946	0.686	7e-72
255638507	229	unknown [Glycine max]	0.920	0.956	0.672	1e-71

>gi|224067032|ref|XP_002302334.1| predicted protein [Populus trichocarpa] gi|222844060|gb|EEE81607.1| predicted protein [Populus trichocarpa]

 Score =  309 bits (791), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 167/250 (66%), Positives = 194/250 (77%), Gaps = 13/250 (5%)

Query: 1   MEIEVSK---SSALSLDVERKRDEEKEKVRVKRKTLEAVLQQCQRALELLSNG---FDED 54
           ME+EVS    SSA+ L+ ER +  +K++VRV+RKTL  VL+QCQRALELL+N     D+D
Sbjct: 1   MELEVSSPISSSAVDLE-ERNKQTDKDQVRVRRKTLVVVLEQCQRALELLNNTDSVEDDD 59

Query: 55  DNDVGAVMSDE---ETSREGSSNQRIDREADELCDLLRSRVECPDFLDKLEY--AQLSGP 109
           + D     S E     SR+ SS    DREADELCDLL+SRVECP+FL+KLE   AQL G 
Sbjct: 60  EGDTSGAESREVESSPSRDCSSTSFGDREADELCDLLKSRVECPEFLEKLELECAQLPGS 119

Query: 110 PNNIE-GSSWDMVSDNDLWESGNIDLDREDYVLVSEEDIVDGIACFMAAYLLSLKQAKNL 168
               E GSSWDMVS +DLWE  N   D+EDYVLV +EDIV+GIACFMAAYLLSLKQ K+L
Sbjct: 120 QYITEDGSSWDMVSGDDLWEGENDGSDQEDYVLVQQEDIVEGIACFMAAYLLSLKQTKDL 179

Query: 169 TPNQLQEALSKTFSVKKRKGKLRKAWDGSKVIYNVASWGATAVGIYQNPVILRAASKAFW 228
            P QLQEALSKTFSVKK+ GKLRKAWDGSK+IYN ASWGATA+G+YQNPV+ RAASKAFW
Sbjct: 180 APAQLQEALSKTFSVKKKTGKLRKAWDGSKIIYNAASWGATAIGLYQNPVLFRAASKAFW 239

Query: 229 TSCHVISKLL 238
           TSCHV+SKLL
Sbjct: 240 TSCHVMSKLL 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545920|ref|XP_002514020.1| conserved hypothetical protein [Ricinus communis] gi|223547106|gb|EEF48603.1| conserved hypothetical protein [Ricinus communis]

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 171/245 (69%), Positives = 198/245 (80%), Gaps = 9/245 (3%)

Query: 1   MEIEVSKSSALSLDVERKRDEEKEKVRVKRKTLEAVLQQCQRALELLSNGFDEDDNDVGA 60
           MEIEVS+S++   D+E + +  K+ VRV RKTL+ VL+QCQRAL+LLS+    DD+D   
Sbjct: 1   MEIEVSRSTSNLTDLEERNN--KDTVRVTRKTLKTVLEQCQRALQLLSDTDVLDDDDDDD 58

Query: 61  VMSD------EETSREGSSNQRIDREADELCDLLRSRVECPDFLDKLEYAQLSGPPNNIE 114
                     E++SRE      +DREA ELCDLL+SRVEC DFL KLE AQ+S P N  E
Sbjct: 59  DDGADCSAKLEDSSRETLVASPVDREAYELCDLLKSRVECADFLQKLECAQVSVPQNIAE 118

Query: 115 -GSSWDMVSDNDLWESGNIDLDREDYVLVSEEDIVDGIACFMAAYLLSLKQAKNLTPNQL 173
            GSSWDMV++NDLWE  N+D D+EDYVLV +EDIV+GIACFMAAYLLS+KQ K+LTPNQL
Sbjct: 119 EGSSWDMVNENDLWEFENVDSDQEDYVLVRQEDIVEGIACFMAAYLLSVKQTKDLTPNQL 178

Query: 174 QEALSKTFSVKKRKGKLRKAWDGSKVIYNVASWGATAVGIYQNPVILRAASKAFWTSCHV 233
           QEALSKTFSVKK+KGKLRKAWDGSKVIYNVASWGATA+GIYQNPVILRAASKAFWTSCHV
Sbjct: 179 QEALSKTFSVKKKKGKLRKAWDGSKVIYNVASWGATAIGIYQNPVILRAASKAFWTSCHV 238

Query: 234 ISKLL 238
           ISKLL
Sbjct: 239 ISKLL 243

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461371|ref|XP_004148415.1| PREDICTED: uncharacterized protein LOC101202793 [Cucumis sativus]

 Score =  299 bits (765), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 165/245 (67%), Positives = 194/245 (79%), Gaps = 8/245 (3%)

Query: 1   MEIEVSKSSALSLDVERKRDEEK---EKVRVKRKTLEAVLQQCQRALELL--SNGFDEDD 55
           ME++VSK ++  +D  ++++ E    ++VRVK+KTL+AVL+QCQRALE L  SN  DE++
Sbjct: 1   MELQVSKPTSDFVDNSKRKNLEGPTGDRVRVKKKTLQAVLEQCQRALESLNESNADDENE 60

Query: 56  -NDVGAVMSDEETSREGSSNQRIDREADELCDLLRSRVECPDFLDKLEYAQLSGPPNNIE 114
            NDV     ++    EGS +   DREADELCDLL+S+VE  DFL+KLE AQ S P N  E
Sbjct: 61  GNDVDEGQDEDVRGGEGSGSVPRDREADELCDLLKSKVERHDFLEKLEDAQASVPQNTFE 120

Query: 115 -GSSWDMVSDNDLWESGNIDLDREDYVLVSEEDIVDGIACFMAAYLLSLKQAKNLTPNQL 173
             SSWD+VSD DLWES +  LD+E YV+V +EDIVDGIACFMAAYLLSLK+ K L+PNQL
Sbjct: 121 ECSSWDLVSDVDLWESDDA-LDQEGYVVVKQEDIVDGIACFMAAYLLSLKETKELSPNQL 179

Query: 174 QEALSKTFSVKKRKGKLRKAWDGSKVIYNVASWGATAVGIYQNPVILRAASKAFWTSCHV 233
           Q AL KTFSVKKRKGKLRKAWDGSKVIYNVASWGATAVGIYQNPVIL AASKAFWTSC V
Sbjct: 180 QNALCKTFSVKKRKGKLRKAWDGSKVIYNVASWGATAVGIYQNPVILNAASKAFWTSCQV 239

Query: 234 ISKLL 238
           ISKLL
Sbjct: 240 ISKLL 244

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459123|ref|XP_002285695.1| PREDICTED: uncharacterized protein LOC100267834 [Vitis vinifera] gi|302142041|emb|CBI19244.3| unnamed protein product [Vitis vinifera]

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 170/243 (69%), Positives = 194/243 (79%), Gaps = 8/243 (3%)

Query: 1   MEIEVSKSSALSLDVERKRDEEKEKVRVKRKTLEAVLQQCQRALELLSN-GFDEDDNDVG 59
           ME+EVS S + S DV +    EK++V VKRKTL+AVL+QCQRALELL N G   D +D  
Sbjct: 1   MEVEVSGSKSSSGDVPKV---EKDRVLVKRKTLQAVLEQCQRALELLENTGDVLDGDDED 57

Query: 60  AVMSDEETSREG--SSNQRIDREADELCDLLRSRVECPDFLDKLEYAQLSGPPN--NIEG 115
             +   E   EG  S++   DREADELCDLL+SR+ECPDFL+KLE AQ+S P N    EG
Sbjct: 58  DAVDGAEVEAEGDGSASPCRDREADELCDLLKSRLECPDFLEKLESAQVSVPQNISAEEG 117

Query: 116 SSWDMVSDNDLWESGNIDLDREDYVLVSEEDIVDGIACFMAAYLLSLKQAKNLTPNQLQE 175
           SSWDM++DNDLWE G  DLD+E+YVLV +EDIV+GIACFMAAYLLSLKQ K LTPNQLQE
Sbjct: 118 SSWDMINDNDLWEGGISDLDQENYVLVRQEDIVEGIACFMAAYLLSLKQTKELTPNQLQE 177

Query: 176 ALSKTFSVKKRKGKLRKAWDGSKVIYNVASWGATAVGIYQNPVILRAASKAFWTSCHVIS 235
           ALSKTFSVKK+KGKLRKAWDGSKVIYNVASWGATA+GIYQNP +LR AS AFWTSC VIS
Sbjct: 178 ALSKTFSVKKKKGKLRKAWDGSKVIYNVASWGATAIGIYQNPALLRVASAAFWTSCRVIS 237

Query: 236 KLL 238
           KL 
Sbjct: 238 KLF 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081957|ref|XP_002306543.1| predicted protein [Populus trichocarpa] gi|222855992|gb|EEE93539.1| predicted protein [Populus trichocarpa]

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 168/244 (68%), Positives = 195/244 (79%), Gaps = 9/244 (3%)

Query: 1   MEIEVSKSSALS-LDVERKRDEEKEKVRVKRKTLEAVLQQCQRALELLSN--GFDEDDND 57
           MEIEVS S   S +D+E +    K++VRV+RKTL+ VL+QCQRALELL+N  G D+D   
Sbjct: 1   MEIEVSSSIPPSTVDLEERN---KDQVRVRRKTLKVVLEQCQRALELLNNADGVDDDGYS 57

Query: 58  VGAVMSDEETSREGSSNQRI--DREADELCDLLRSRVECPDFLDKLEYAQLSGPPNNIE- 114
            G    + E+S    S+     D+EADELCDLL+SRVECPDFL+KLE AQLS   N  E 
Sbjct: 58  SGEESKEVESSPSRDSSSTSLGDQEADELCDLLKSRVECPDFLEKLECAQLSVSQNITEE 117

Query: 115 GSSWDMVSDNDLWESGNIDLDREDYVLVSEEDIVDGIACFMAAYLLSLKQAKNLTPNQLQ 174
           GSSWDM+S+NDLWE+   + D+EDYVLV EEDIV+GIACFMAAYLLSLKQ K+L P QLQ
Sbjct: 118 GSSWDMISENDLWEAEIDESDQEDYVLVREEDIVEGIACFMAAYLLSLKQTKDLAPTQLQ 177

Query: 175 EALSKTFSVKKRKGKLRKAWDGSKVIYNVASWGATAVGIYQNPVILRAASKAFWTSCHVI 234
           EALSKTFSVKK+KGKLRKAWDGSKVIYNVASWGATA+G+YQNPV+  AASKAFWTSCHVI
Sbjct: 178 EALSKTFSVKKKKGKLRKAWDGSKVIYNVASWGATAIGLYQNPVLFGAASKAFWTSCHVI 237

Query: 235 SKLL 238
           SKLL
Sbjct: 238 SKLL 241

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42568423|ref|NP_199782.3| uncharacterized protein [Arabidopsis thaliana] gi|119360109|gb|ABL66783.1| At5g49710 [Arabidopsis thaliana] gi|332008464|gb|AED95847.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 143/222 (64%), Positives = 170/222 (76%), Gaps = 5/222 (2%)

Query: 22  EKEKVRVKRKTLEAVLQQCQRALELL-----SNGFDEDDNDVGAVMSDEETSREGSSNQR 76
           +K+ +RVKRKTL+A+L  CQRALELL     S+  DEDD   G     +E+  E SS+ R
Sbjct: 13  DKDNIRVKRKTLQALLNDCQRALELLNLAEVSSEDDEDDKSTGEGSGSQESRGEVSSSDR 72

Query: 77  IDREADELCDLLRSRVECPDFLDKLEYAQLSGPPNNIEGSSWDMVSDNDLWESGNIDLDR 136
            D EADEL DL++SRVEC DFL+K+E AQ+S P +  + SSWD+VS++DLW+   +    
Sbjct: 73  EDPEADELYDLIKSRVECDDFLEKIESAQVSAPQHLADSSSWDVVSEDDLWDDETMAQRE 132

Query: 137 EDYVLVSEEDIVDGIACFMAAYLLSLKQAKNLTPNQLQEALSKTFSVKKRKGKLRKAWDG 196
           EDYVLV EEDI +GIACFMA YL SLKQ K+LTP QLQ+ALS+ FSVK RKGKLRKAWDG
Sbjct: 133 EDYVLVREEDIAEGIACFMATYLQSLKQTKDLTPEQLQKALSRMFSVKNRKGKLRKAWDG 192

Query: 197 SKVIYNVASWGATAVGIYQNPVILRAASKAFWTSCHVISKLL 238
           SKV YNVASW AT +GIYQNPVILR ASKAFW SCHVISKL+
Sbjct: 193 SKVAYNVASWSATVIGIYQNPVILRVASKAFWASCHVISKLV 234

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573642|ref|NP_974917.1| uncharacterized protein [Arabidopsis thaliana] gi|110738369|dbj|BAF01111.1| hypothetical protein [Arabidopsis thaliana] gi|332008465|gb|AED95848.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 144/223 (64%), Positives = 170/223 (76%), Gaps = 6/223 (2%)

Query: 22  EKEKVRVKRKTLEAVLQQCQRALELL-----SNGFDEDDNDVGAVMSDEETSREGSSNQR 76
           +K+ +RVKRKTL+A+L  CQRALELL     S+  DEDD   G     +E+  E SS+ R
Sbjct: 13  DKDNIRVKRKTLQALLNDCQRALELLNLAEVSSEDDEDDKSTGEGSGSQESRGEVSSSDR 72

Query: 77  IDREADELCDLLRSRVECPDFLDKLEYAQLSGPPNNIE-GSSWDMVSDNDLWESGNIDLD 135
            D EADEL DL++SRVEC DFL+K+E AQ+S P +  E  SSWD+VS++DLW+   +   
Sbjct: 73  EDPEADELYDLIKSRVECDDFLEKIESAQVSAPQHLAEDSSSWDVVSEDDLWDDETMAQR 132

Query: 136 REDYVLVSEEDIVDGIACFMAAYLLSLKQAKNLTPNQLQEALSKTFSVKKRKGKLRKAWD 195
            EDYVLV EEDI +GIACFMA YL SLKQ K+LTP QLQ+ALS+ FSVK RKGKLRKAWD
Sbjct: 133 EEDYVLVREEDIAEGIACFMATYLQSLKQTKDLTPEQLQKALSRMFSVKNRKGKLRKAWD 192

Query: 196 GSKVIYNVASWGATAVGIYQNPVILRAASKAFWTSCHVISKLL 238
           GSKV YNVASW AT +GIYQNPVILR ASKAFW SCHVISKL+
Sbjct: 193 GSKVAYNVASWSATVIGIYQNPVILRVASKAFWASCHVISKLV 235

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515696|ref|XP_003526534.1| PREDICTED: uncharacterized protein LOC100817903 [Glycine max]

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 150/220 (68%), Positives = 176/220 (80%), Gaps = 1/220 (0%)

Query: 20  DEEKEKVRVKRKTLEAVLQQCQRALELLSNGFDEDDNDVGAVMSDEETSREGSSNQRIDR 79
           D + + +RVKRKTLEAVL QCQRALE ++       +     + +E+   EG +    D 
Sbjct: 10  DSDPDPLRVKRKTLEAVLLQCQRALESINATSATASSSASTYVDEEDYDGEGEATASADP 69

Query: 80  EADELCDLLRSRVECPDFLDKLEYAQLSGPPN-NIEGSSWDMVSDNDLWESGNIDLDRED 138
           +ADELCDLL+SRVECP FL +LE A+ S   N + EG+SWDMVS+NDLWE   +D ++ED
Sbjct: 70  DADELCDLLKSRVECPAFLQQLECARASVSQNIDEEGNSWDMVSENDLWEGERVDSEQED 129

Query: 139 YVLVSEEDIVDGIACFMAAYLLSLKQAKNLTPNQLQEALSKTFSVKKRKGKLRKAWDGSK 198
           YVLV +EDIV+GIACFMAAYLLSLKQ K+LTP QLQ ALSKTFSVKK+KGKLRKAWDGSK
Sbjct: 130 YVLVRQEDIVEGIACFMAAYLLSLKQTKDLTPIQLQSALSKTFSVKKKKGKLRKAWDGSK 189

Query: 199 VIYNVASWGATAVGIYQNPVILRAASKAFWTSCHVISKLL 238
           VIYNVASWGATA+GIYQNPVILRAA+KAFWTSCHVISKLL
Sbjct: 190 VIYNVASWGATAIGIYQNPVILRAATKAFWTSCHVISKLL 229

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806272|ref|NP_001241472.1| uncharacterized protein LOC100790753 [Glycine max] gi|255640191|gb|ACU20386.1| unknown [Glycine max]

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 151/220 (68%), Positives = 175/220 (79%), Gaps = 6/220 (2%)

Query: 20  DEEKEKVRVKRKTLEAVLQQCQRALELLSNGFDEDDNDVGAVMSDEETSREGSSNQRIDR 79
           + + + +RVKRKTLEAVL QCQRALEL++       +   A + +E+   EG +    D 
Sbjct: 12  ESDPDPLRVKRKTLEAVLLQCQRALELINAT-----SSTAADVDEEDCEIEGEATASADP 66

Query: 80  EADELCDLLRSRVECPDFLDKLEYAQLSGPPN-NIEGSSWDMVSDNDLWESGNIDLDRED 138
           +ADELCDLL+SRVECP FL +LE AQ S   N + EG+SWDMVS NDLWE    D ++ED
Sbjct: 67  DADELCDLLKSRVECPAFLQQLECAQASVSQNIDEEGNSWDMVSKNDLWEGERADSEQED 126

Query: 139 YVLVSEEDIVDGIACFMAAYLLSLKQAKNLTPNQLQEALSKTFSVKKRKGKLRKAWDGSK 198
           YVLV +EDIV+GIACFMAAYLLSLKQ K+LTP QLQ ALSKTFSVKK+KGKLRKAWDGSK
Sbjct: 127 YVLVRQEDIVEGIACFMAAYLLSLKQTKDLTPIQLQSALSKTFSVKKKKGKLRKAWDGSK 186

Query: 199 VIYNVASWGATAVGIYQNPVILRAASKAFWTSCHVISKLL 238
           VIYNVASWGATA+GIYQNPVIL AA+KAFWTSCHVISKLL
Sbjct: 187 VIYNVASWGATAIGIYQNPVILGAATKAFWTSCHVISKLL 226

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638507|gb|ACU19562.1| unknown [Glycine max]

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 148/220 (67%), Positives = 174/220 (79%), Gaps = 1/220 (0%)

Query: 20  DEEKEKVRVKRKTLEAVLQQCQRALELLSNGFDEDDNDVGAVMSDEETSREGSSNQRIDR 79
           D + + +RVKRKTLEAVL QCQRALE ++       +     + +E+   EG +    D 
Sbjct: 10  DSDPDPLRVKRKTLEAVLLQCQRALESINATSATASSSASTYVDEEDYDGEGEATASADP 69

Query: 80  EADELCDLLRSRVECPDFLDKLEYAQLSGPPN-NIEGSSWDMVSDNDLWESGNIDLDRED 138
           +ADELCDLL+SRVECP FL +LE A+ S   N + EG+SWDMVS+NDLWE   +D ++ED
Sbjct: 70  DADELCDLLKSRVECPAFLQQLECARASVSQNIDEEGNSWDMVSENDLWEGERVDSEQED 129

Query: 139 YVLVSEEDIVDGIACFMAAYLLSLKQAKNLTPNQLQEALSKTFSVKKRKGKLRKAWDGSK 198
           YVLV +EDIV+GIACFMAAYLLSLKQ K+LTP QLQ AL KTFSVKK+KGKLRKAWDGSK
Sbjct: 130 YVLVRQEDIVEGIACFMAAYLLSLKQTKDLTPIQLQSALGKTFSVKKKKGKLRKAWDGSK 189

Query: 199 VIYNVASWGATAVGIYQNPVILRAASKAFWTSCHVISKLL 238
           VIYNVASWGATA+GIYQNPVILRAA+KAFWTSCHVISKL 
Sbjct: 190 VIYNVASWGATAIGIYQNPVILRAATKAFWTSCHVISKLF 229

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
TAIR|locus:2157017	235	AT5G49710 "AT5G49710" [Arabido	0.869	0.880	0.647	5.1e-67
TAIR|locus:2121875	241	AT4G24590 "AT4G24590" [Arabido	0.869	0.858	0.589	7.3e-59
TAIR|locus:2194829	271	AT1G44770 "AT1G44770" [Arabido	0.516	0.453	0.325	1.6e-15

TAIR|locus:2157017 AT5G49710 "AT5G49710" [Arabidopsis thaliana (taxid:3702)]

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 138/213 (64%), Positives = 161/213 (75%)

Query:    32 TLEAVLQQCQRALELL-----SNGFDEDDNDVGAVMSDEETSREGSSNQRIDREADELCD 86
             TL+A+L  CQRALELL     S+  DEDD   G     +E+  E SS+ R D EADEL D
Sbjct:    23 TLQALLNDCQRALELLNLAEVSSEDDEDDKSTGEGSGSQESRGEVSSSDREDPEADELYD 82

Query:    87 LLRSRVECPDFLDKLEYAQLSGPPNNIE-GSSWDMVSDNDLWESGNIDLDREDYVLVSEE 145
             L++SRVEC DFL+K+E AQ+S P +  E  SSWD+VS++DLW+   +    EDYVLV EE
Sbjct:    83 LIKSRVECDDFLEKIESAQVSAPQHLAEDSSSWDVVSEDDLWDDETMAQREEDYVLVREE 142

Query:   146 DIVDGIACFMAAYLLSLKQAKNLTPNQLQEALSKTFSVKKRKGKLRKAWDGSKVIYNVAS 205
             DI +GIACFMA YL SLKQ K+LTP QLQ+ALS+ FSVK RKGKLRKAWDGSKV YNVAS
Sbjct:   143 DIAEGIACFMATYLQSLKQTKDLTPEQLQKALSRMFSVKNRKGKLRKAWDGSKVAYNVAS 202

Query:   206 WGATAVGIYQNPVILRAASKAFWTSCHVISKLL 238
             W AT +GIYQNPVILR ASKAFW SCHVISKL+
Sbjct:   203 WSATVIGIYQNPVILRVASKAFWASCHVISKLV 235

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2121875 AT4G24590 "AT4G24590" [Arabidopsis thaliana (taxid:3702)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 125/212 (58%), Positives = 156/212 (73%)

Query:    32 TLEAVLQQCQRALELLSNGFDE---DDNDVGAVMSDEETSREG-SSNQRIDREADELCDL 87
             TL+ +L  CQRALELL    DE   + ++      +EE+ RE  S++   D EAD+  DL
Sbjct:    30 TLQNLLADCQRALELLELPGDENGGEQSESPEEEEEEESDREEPSASDPGDPEADKFYDL 89

Query:    88 LRSRVECPDFLDKLEYAQLSGPPNNIE-GSSWDMVSDNDLWESGNIDLDREDYVLVSEED 146
             ++SRVEC DF +K+E AQ+S P    E  SSWD+VS++DLW+   +    +DYV+V EED
Sbjct:    90 IKSRVECNDFREKIELAQVSVPQVLAEDSSSWDVVSEDDLWDEECVGQTEDDYVVVREED 149

Query:   147 IVDGIACFMAAYLLSLKQAKNLTPNQLQEALSKTFSVKKRKGKLRKAWDGSKVIYNVASW 206
             I DGIACFMA YL SLKQ K+++P+QLQ+ALS  FSVKKRKGKLRKAW+GSKVIYNVASW
Sbjct:   150 IADGIACFMATYLSSLKQTKDISPDQLQKALSTMFSVKKRKGKLRKAWEGSKVIYNVASW 209

Query:   207 GATAVGIYQNPVILRAASKAFWTSCHVISKLL 238
              ATA+GIYQNP+IL  ASKAFW SC  ISKL+
Sbjct:   210 SATAIGIYQNPMILSIASKAFWMSCQAISKLV 241

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2194829 AT1G44770 "AT1G44770" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 42/129 (32%), Positives = 75/129 (58%)

Query:   114 EGSSWDMVSDNDLWESGNID----LDREDYVLVSEEDIVDGIACFMAAYLLSLKQAKNLT 169
             E S W +V+D D+  S N++    +D E Y++V+EE ++D +A F+A  ++S  +AKNL 
Sbjct:   145 EPSWWVLVTD-DMVPS-NVEEQSAIDNEHYIVVNEEHVIDAVAHFLAKCIMSNPKAKNLK 202

Query:   170 PNQLQEALSKTFSVKKRKGKLRKAWDGSKVIYNVASWGATAVGIYQNPVILRAASKAFWT 229
             P +LQ+ L +  +   + GK+   W   K+ Y +++WG    G+YQ   +L+ A+K    
Sbjct:   203 PEELQKLLVQEVTALSKVGKVVDIWHAGKMFYTLSTWGLAFGGLYQARGVLKIAAKGVHA 262

Query:   230 SCHVISKLL 238
             +  V+ + L
Sbjct:   263 TSKVVLRAL 271


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.130   0.375    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      238       220   0.00094  112 3  11 23  0.43    33
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  186 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.38u 0.09s 21.47t   Elapsed:  00:00:01
  Total cpu time:  21.38u 0.09s 21.47t   Elapsed:  00:00:01
  Start:  Fri May 10 13:08:55 2013   End:  Fri May 10 13:08:56 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0007033 "vacuole organization" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	238
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 6e-04
 Identities = 30/191 (15%), Positives = 64/191 (33%), Gaps = 52/191 (27%)

Query: 7   KSSALSLDVERKRDEEKE--------KVRVKRKTLEAVLQQCQRALELLSNGFDEDDNDV 58
           K+  ++LDV      + +         ++    + E VL+     L+ L    D +    
Sbjct: 163 KTW-VALDVCLSYKVQCKMDFKIFWLNLK-NCNSPETVLEM----LQKLLYQIDPNWTSR 216

Query: 59  GAVMSDEETSREGSSNQRIDREADELCDLLRSR--VECPDFLDKLEYAQLSGPPNNIEGS 116
               S+ +         RI     EL  LL+S+    C   L                  
Sbjct: 217 SDHSSNIK--------LRIHSIQAELRRLLKSKPYENCLLVLL----------------- 251

Query: 117 SWDMVSDNDLWESGNIDLD-REDYVLVSEED--IVDGIACFMAAYLLSLKQAKNLTPNQL 173
             + V +   W +   +L  +   +L++     + D ++     ++     +  LTP+++
Sbjct: 252 --N-VQNAKAWNA--FNLSCK---ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 174 QEALSKTFSVK 184
           +  L K    +
Sbjct: 304 KSLLLKYLDCR 314

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00