Citrus Sinensis ID: 026433

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MVQKTVLPFLKINSGRAFVEFNVQVSLFFLAVSHEECAEEELEWLSNFPTVETFVDISSNPNILKQQSPNSVLENSNSSSSTSTNGSTITNGNNNSNSIIMNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPVVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQMMGIELGVLGVKPVDKG
Secondary Structure (PSIPRED)
cccccccccEEEccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEcEEEEEccccccHHcHHcccccccccccccccHHHHHHHHccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccHHHcccEEEcccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
mvqktvlpflkinsgraFVEFNVQVSLFFLAVSHEECAEEELEwlsnfptvetfvdissnpnilkqqspnsvlensnsssststngstitngnnnsnsIIMNccgnlrvpvrarSKLRTRCRRELLNQEAWWGSVHGSVKAAKPVVSKVIIGrkcqhcgaektpqwragpmgpktlcnacgvrfksgrlvpeyrpansptfsselhsnsHRKVVEMRRQKQMMGielgvlgvkpvdkg
Flexible Loop (DISEMBL)
mvqktvlpflkinsgraFVEFNVQVSLFFLAVSHEECAEEELEWLSNFPTVETFVDISSNPNILKQQSPNSVLENSNSSSSTSTNGSTITNGNNNSNSIIMNCCGNLRVPVRARSKLRTRCRRELlnqeawwgsvhgsvkaAKPVVSKVIIGRKCQHCGAEktpqwragpmgPKTLCNACGVRFKSGRLVPEYRPansptfsselhsnshRKVVEMRRQKQmmgielgvlgvkpvdkg
Low Complexity Region (SEG)
MVQKTVLPFLKINSGRAFVEFNVQVSLFFLAVSHeecaeeeleWLSNFPTVETFVDISSNPNILKQQSPNSVLEnsnsssststngstitngnnnsnsiiMNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHGsvkaakpvvskvIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQMMGIELGVLGVKPVDKG
Disordered region (IsUnstruct)
****TVLPFLKINSGRAFVEFNVQVSLFFLAVSHEECAEEELEWLSNFPTVETFVDI****************************************SIIMNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPVVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLV************************************LGV*********
Disordered Region (DISOPRED)
****TVL*******************LFFLAVSHEECAEEELEWLSNFPTVE********************************************************************************************************HCGAEKTPQWRAGPMGPKTLCNACGVR*******************************************************
Disordered Region (DISEMBL)
MVQKTVLPFLKINSGRAFVEFNVQVSLFFLAVSHEECAEEELEWLSNFPTVETFVDISSNPNILKQ*********************TITNGNNNSNSIIMNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPVVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQMMGIELGVLGVKPVDKG
Disordered Region (DISPRO)
***KTVLPFLKINSGRAFVEFNVQVSLFFLAVSHE*C*EEELEWLSNFP**************LKQ**************************************************************************************RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSS***********************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVQKTVLPFLKINSGRAFVEFNVQVSLFFLAVSHEECAEEELEWLSNFPTVETFVDISSNPNILKQQSPNSVLENSNSSSSTSTNGSTITNGNNNSNSIIMNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPVVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQMMGIELGVLGVKPVDKG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	238	2.2.26 [Sep-21-2011]
Q8LAU9	274	GATA transcription factor	yes	no	0.760	0.660	0.507	4e-43
O82632	308	GATA transcription factor	no	no	0.739	0.571	0.429	2e-31
Q9FH57	339	GATA transcription factor	no	no	0.289	0.203	0.840	4e-31
Q8L4M6	269	GATA transcription factor	no	no	0.533	0.472	0.510	1e-30
P69781	331	GATA transcription factor	no	no	0.701	0.504	0.422	1e-30
O49741	264	GATA transcription factor	no	no	0.298	0.268	0.788	1e-29
Q9SD38	312	GATA transcription factor	no	no	0.289	0.221	0.797	1e-29
O49743	240	GATA transcription factor	no	no	0.294	0.291	0.771	7e-29
Q6DBP8	303	GATA transcription factor	no	no	0.596	0.468	0.426	7e-28
O65515	238	GATA transcription factor	no	no	0.319	0.319	0.710	1e-27

>sp|Q8LAU9|GATA1_ARATH GATA transcription factor 1 OS=Arabidopsis thaliana GN=GATA1 PE=2 SV=2

 Score =  174 bits (442), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 105/207 (50%), Positives = 137/207 (66%), Gaps = 26/207 (12%)

Query: 39  EEELEWLSN---FPTVETFVDISSNPNI------------LKQQSPNSVLENSNSSSSTS 83
           EE+LEW+SN   FP +ETFV +  + +             +KQ SP SVLE S+ SS+T+
Sbjct: 58  EEDLEWISNKNAFPVIETFVGVLPSEHFPITSLLEREATEVKQLSPVSVLETSSHSSTTT 117

Query: 84  TNGSTITNGNNNSNSI------IMNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHG 137
           T+ S+  +  + + +       IM+CC   + P +ARSK R         +  W G+  G
Sbjct: 118 TSNSSGGSNGSTAVATTTTTPTIMSCCVGFKAPAKARSKRRRT--GRRDLRVLWTGNEQG 175

Query: 138 SVKAAKPV---VSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYR 194
            ++  K +    + +I+GRKCQHCGAEKTPQWRAGP GPKTLCNACGVR+KSGRLVPEYR
Sbjct: 176 GIQKKKTMTVAAAALIMGRKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYR 235

Query: 195 PANSPTFSSELHSNSHRKVVEMRRQKQ 221
           PANSPTF++ELHSNSHRK+VEMR+Q Q
Sbjct: 236 PANSPTFTAELHSNSHRKIVEMRKQYQ 262

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.
Arabidopsis thaliana (taxid: 3702)

>sp|O82632|GATA9_ARATH GATA transcription factor 9 OS=Arabidopsis thaliana GN=GATA9 PE=2 SV=1

 Score =  135 bits (341), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/214 (42%), Positives = 117/214 (54%), Gaps = 38/214 (17%)

Query: 30  LAVSHEECAEEELEWLSNFPTVETFVDISSNPNILKQQSPNSVLENSNSSSSTSTNGSTI 89
           L + +++ AE  LEWLSNF   E+F     +   L      S L+N  ++ ST T+   I
Sbjct: 70  LYIPNDDIAE--LEWLSNF-VEESFAGEDQDKLHLF-----SGLKNPQTTGSTLTH--LI 119

Query: 90  TNGNNNSNSIIMNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHGSV---------K 140
                  +  I     N+ VP +ARSK R+R      +  + W S   S+         K
Sbjct: 120 KPEPELDHQFIDIDESNVAVPAKARSK-RSR------SAASTWASRLLSLADSDETNPKK 172

Query: 141 AAKPVVSKVIIG------------RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGR 188
             + V  +   G            R+C HC  EKTPQWR GPMGPKTLCNACGVR+KSGR
Sbjct: 173 KQRRVKEQDFAGDMDVDCGESGGGRRCLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGR 232

Query: 189 LVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQM 222
           LVPEYRPA+SPTF    HSNSHRKV+E+RRQK+M
Sbjct: 233 LVPEYRPASSPTFVMARHSNSHRKVMELRRQKEM 266

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH57|GATA5_ARATH GATA transcription factor 5 OS=Arabidopsis thaliana GN=GATA5 PE=2 SV=1

 Score =  134 bits (338), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 58/69 (84%), Positives = 64/69 (92%)

Query: 153 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRK 212
           RKC HCG +KTPQWRAGPMG KTLCNACGVR+KSGRL+PEYRPA SPTFSSELHSN HRK
Sbjct: 249 RKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRK 308

Query: 213 VVEMRRQKQ 221
           V+EMRR+K+
Sbjct: 309 VIEMRRKKE 317

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L4M6|GATA3_ARATH GATA transcription factor 3 OS=Arabidopsis thaliana GN=GATA3 PE=2 SV=2

 Score =  133 bits (334), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/139 (51%), Positives = 87/139 (62%), Gaps = 12/139 (8%)

Query: 108 RVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPVVSK------VIIGRKCQHCGAE 161
           R+PV+ R+K   R R  L     W         AA   + K      ++  R+C HCG  
Sbjct: 132 RIPVKPRTK---RSRNSLTGSRVWPLVSTNHQHAATEQLRKKKQETVLVFQRRCSHCGTN 188

Query: 162 KTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQ 221
            TPQWR GP+GPKTLCNACGVRFKSGRL PEYRPA+SPTFS+E+HSN HRKV+E+R+ K+
Sbjct: 189 NTPQWRTGPVGPKTLCNACGVRFKSGRLCPEYRPADSPTFSNEIHSNLHRKVLELRKSKE 248

Query: 222 MMGIELGVLGVK--PVDKG 238
            +G E G    K  PV  G
Sbjct: 249 -LGEETGEASTKSDPVKFG 266

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|P69781|GAT12_ARATH GATA transcription factor 12 OS=Arabidopsis thaliana GN=GATA12 PE=2 SV=1

 Score =  132 bits (333), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/225 (42%), Positives = 115/225 (51%), Gaps = 58/225 (25%)

Query: 40  EELEWLSNFPTVETFVDISSNPNILKQQSPNSVLE-NSNSSSSTSTNGSTITNGNNNSNS 98
           +ELEWLSN       VD S +P  + +      LE  S   S       T +  N NS+S
Sbjct: 80  DELEWLSNI------VDESLSPEDVHK------LELISGFKSRPDPKSDTGSPENPNSSS 127

Query: 99  IIMNCCGNLRVPVRARSKLRTRC------RRELLNQEAWWGS------------------ 134
            I     ++ VP +ARSK R+R        R LL +E ++ S                  
Sbjct: 128 PIFTT--DVSVPAKARSK-RSRAAACNWASRGLL-KETFYDSPFTGETILSSQQHLSPPT 183

Query: 135 --------------VHGSVKAAKPVVSKVIIG---RKCQHCGAEKTPQWRAGPMGPKTLC 177
                         V G  +  K V S    G   R+C HC  +KTPQWR GPMGPKTLC
Sbjct: 184 SPPLLMAPLGKKQAVDGGHRRKKDVSSPESGGAEERRCLHCATDKTPQWRTGPMGPKTLC 243

Query: 178 NACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQM 222
           NACGVR+KSGRLVPEYRPA SPTF    HSNSHRKV+E+RRQK+M
Sbjct: 244 NACGVRYKSGRLVPEYRPAASPTFVLAKHSNSHRKVMELRRQKEM 288

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|O49741|GATA2_ARATH GATA transcription factor 2 OS=Arabidopsis thaliana GN=GATA2 PE=2 SV=1

 Score =  130 bits (326), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 56/71 (78%), Positives = 64/71 (90%)

Query: 153 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRK 212
           R+C HC +EKTPQWR GP+GPKTLCNACGVRFKSGRLVPEYRPA+SPTF    HSNSHRK
Sbjct: 179 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFVLTQHSNSHRK 238

Query: 213 VVEMRRQKQMM 223
           V+E+RRQK++M
Sbjct: 239 VMELRRQKEVM 249

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SD38|GATA6_ARATH GATA transcription factor 6 OS=Arabidopsis thaliana GN=GATA6 PE=2 SV=1

 Score =  129 bits (325), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 55/69 (79%), Positives = 63/69 (91%)

Query: 153 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRK 212
           R+C HCG +KTPQWRAGP+G KTLCNACGVR+KSGRL+PEYRPA SPTFSSELHSN H K
Sbjct: 221 RQCGHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHSK 280

Query: 213 VVEMRRQKQ 221
           V+EMRR+K+
Sbjct: 281 VIEMRRKKE 289

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|O49743|GATA4_ARATH GATA transcription factor 4 OS=Arabidopsis thaliana GN=GATA4 PE=2 SV=1

 Score =  127 bits (319), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 54/70 (77%), Positives = 62/70 (88%)

Query: 152 GRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHR 211
            R+C HC +EKTPQWR GP+GPKTLCNACGVR+KSGRLVPEYRPA+SPTF    HSNSHR
Sbjct: 157 ARRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHR 216

Query: 212 KVVEMRRQKQ 221
           KV+E+RRQK+
Sbjct: 217 KVMELRRQKE 226

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBP8|GAT11_ARATH GATA transcription factor 11 OS=Arabidopsis thaliana GN=GATA11 PE=2 SV=1

 Score =  124 bits (310), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/190 (42%), Positives = 95/190 (50%), Gaps = 48/190 (25%)

Query: 63  ILKQQSPNSVLENSNSSSSTSTNGSTITNGNNNSNSIIMNCCGNLRVPV---RARSKLRT 119
           + +  SP SVLENS  S ST  NGS                   L  PV   R++ K  T
Sbjct: 116 LFQSLSPVSVLENSYGSLSTHNNGSQ-----------------RLAFPVKGMRSKRKRPT 158

Query: 120 RCRRELL----------------NQEAWWGSVHGSVKAAK-----PVVSKVI-------I 151
             R   L                  E ++ S   + K  K       VS  +       I
Sbjct: 159 TLRLSYLFPSEPRKPEKSTPGKPESECYFSSEQHAKKKRKIHLTTRTVSSTLEASNSDGI 218

Query: 152 GRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHR 211
            RKC HC   KTPQWR GP GPKTLCNACGVRF+SGRLVPEYRPA+SPTF   +HSNSHR
Sbjct: 219 VRKCTHCETTKTPQWREGPSGPKTLCNACGVRFRSGRLVPEYRPASSPTFIPAVHSNSHR 278

Query: 212 KVVEMRRQKQ 221
           K++EMRR+  
Sbjct: 279 KIIEMRRKDD 288

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|O65515|GATA7_ARATH GATA transcription factor 7 OS=Arabidopsis thaliana GN=GATA7 PE=2 SV=1

 Score =  123 bits (309), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/76 (71%), Positives = 64/76 (84%)

Query: 145 VVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSE 204
           VV +  + R C HCG +KTPQWR GP+G KTLCNACGVRFKSGRL+PEYRPA SPTF++E
Sbjct: 156 VVQQQQLRRCCSHCGVQKTPQWRMGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFTNE 215

Query: 205 LHSNSHRKVVEMRRQK 220
           +HSNSHRKV+E+R  K
Sbjct: 216 IHSNSHRKVLELRLMK 231

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
255554246	205	GATA transcription factor, putative [Ric	0.819	0.951	0.644	7e-57
224057660	258	predicted protein [Populus trichocarpa]	0.794	0.732	0.629	5e-55
449465254	287	PREDICTED: GATA transcription factor 1-l	0.764	0.634	0.544	4e-50
37572445	289	AG-motif binding protein-2 [Nicotiana ta	0.768	0.633	0.533	5e-46
225433393	251	PREDICTED: GATA transcription factor 1-l	0.735	0.697	0.583	9e-45
15229571	274	GATA transcription factor 1 [Arabidopsis	0.760	0.660	0.507	2e-41
21593190	268	GATA transcription factor 1 (AtGATA-1) [	0.760	0.675	0.502	6e-41
297835478	270	hypothetical protein ARALYDRAFT_479930 [	0.760	0.670	0.526	3e-40
357481109	331	GATA transcription factor [Medicago trun	0.764	0.549	0.487	2e-36
110743205	134	GATA transcription factor 1 [Arabidopsis	0.5	0.888	0.620	2e-35

>gi|255554246|ref|XP_002518163.1| GATA transcription factor, putative [Ricinus communis] gi|223542759|gb|EEF44296.1| GATA transcription factor, putative [Ricinus communis]

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 136/211 (64%), Positives = 159/211 (75%), Gaps = 16/211 (7%)

Query: 33  SHEECAEEELEWLSN---FPTVETFVDI-SSNPNIL-KQQSPNSVLENSNSSSSTSTNGS 87
           S+ E AEEELEWLSN   FP+VETFVDI + NP  L K +SP SVLENS +SS++++ G 
Sbjct: 6   SYREFAEEELEWLSNKDAFPSVETFVDILTENPGSLQKHRSPVSVLENSTTSSTSNS-GH 64

Query: 88  TITNGNNNSNSIIMNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPVVS 147
           + TN     +S+IMN C +L VPV+ARSK   R RR+L  Q+ WW S     K      S
Sbjct: 65  SGTN-----DSVIMNYCRSLHVPVKARSKPHRRRRRDLGGQQCWW-SQENLKKVKVVKSS 118

Query: 148 KVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHS 207
              IGRKCQHCGAEKTPQWRAGP+GPKTLCNACGVR+KSGRLVPEYRPA+SPTFSS LHS
Sbjct: 119 SSTIGRKCQHCGAEKTPQWRAGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFSSVLHS 178

Query: 208 NSHRKVVEMRRQKQMMGIELGVLGVKPVDKG 238
           NSHRKV+EMRRQKQMMGI    + VKP++KG
Sbjct: 179 NSHRKVLEMRRQKQMMGI----MVVKPMEKG 205

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057660|ref|XP_002299291.1| predicted protein [Populus trichocarpa] gi|222846549|gb|EEE84096.1| predicted protein [Populus trichocarpa]

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 131/208 (62%), Positives = 151/208 (72%), Gaps = 19/208 (9%)

Query: 36  ECAEEELEWLSN---FPTVET-FVDISSNP-NILKQQSPNSVLENSNSSSSTSTNGSTIT 90
           E AEEELEWLSN   FPTVET F  +S  P +I K  SP SVLENS +SS++++  S+ +
Sbjct: 65  EFAEEELEWLSNKDAFPTVETCFGSLSGEPGSIPKHHSPVSVLENSTTSSTSNSGNSSNS 124

Query: 91  NGNNNSNSIIMNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPVVSKVI 150
                  +IIM+ C  LRVPV+ARSK   R  RE+  QE WW   +   +  KP VS   
Sbjct: 125 -------NIIMSYC-RLRVPVKARSKRHHRHPREIQEQECWWSQENFITR--KPAVSVAK 174

Query: 151 IGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSH 210
           +GRKCQHCG EKTPQWRAGP GPKTLCNACGVR+KSGRLVPEYRPANSPTFSS+LHSNSH
Sbjct: 175 LGRKCQHCGVEKTPQWRAGPDGPKTLCNACGVRYKSGRLVPEYRPANSPTFSSKLHSNSH 234

Query: 211 RKVVEMRRQKQMMGIELGVLGVKPVDKG 238
           RKVVEMRRQKQM G+    L  KP+DKG
Sbjct: 235 RKVVEMRRQKQMTGL----LVAKPMDKG 258

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465254|ref|XP_004150343.1| PREDICTED: GATA transcription factor 1-like [Cucumis sativus] gi|449514819|ref|XP_004164489.1| PREDICTED: GATA transcription factor 1-like [Cucumis sativus]

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 123/226 (54%), Positives = 144/226 (63%), Gaps = 44/226 (19%)

Query: 44  WLSN---FPTVETFVDISSNP------------NILKQQSPNSVLENSNSSSSTSTNGST 88
           WLSN   FP VETFVDI S+             ++ KQ SP SVLE    S+S S++G T
Sbjct: 75  WLSNEDAFPAVETFVDILSDHHHHHAPQPPPLPSVSKQNSPVSVLE----STSISSHGET 130

Query: 89  ITNGNN---NSNSIIMNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPV 145
              GN    +S+SI+M+CCG+L+VP +ARSK R   R   ++          S K  K V
Sbjct: 131 TNGGNKTSVHSSSILMSCCGSLKVPSKARSKRR---RGRHISGHHLLFKQQPSSKNLKQV 187

Query: 146 V-------------SKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPE 192
           V                 IGRKC HCGAEKTPQWRAGP GPKTLCNACGVRFKSGRLVPE
Sbjct: 188 VPTTATAAVVAATTGTAGIGRKCLHCGAEKTPQWRAGPFGPKTLCNACGVRFKSGRLVPE 247

Query: 193 YRPANSPTFSSELHSNSHRKVVEMRRQKQMMGIELGVLGVKPVDKG 238
           YRPA+SPTFS+ELHSNSHRKV+EMRRQKQ     LG++ V P+DKG
Sbjct: 248 YRPASSPTFSAELHSNSHRKVMEMRRQKQ-----LGMV-VNPMDKG 287

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37572445|dbj|BAC98492.1| AG-motif binding protein-2 [Nicotiana tabacum]

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 113/212 (53%), Positives = 136/212 (64%), Gaps = 29/212 (13%)

Query: 34  HEECAEEELEWLSN---FPTVETFVDISSNPNI-LKQQSPNSVLENSNSSSSTSTNGSTI 89
           H EC EEELEWLSN   FP VE F  ++ NP+I     SP SVLENS+S+ ++S NGS  
Sbjct: 73  HPECVEEELEWLSNKDAFPAVE-FGILADNPSIVFDHHSPVSVLENSSSTCNSSGNGSAN 131

Query: 90  TNGNNNSNSIIMNCCGNLRVPVRAR-SKLRTRCRRELLNQEAWWGSVH---------GSV 139
            N         M+CC +L+VPV         R RR      A   S H          SV
Sbjct: 132 ANA-------YMSCCASLKVPVNYPVRARSKRRRRRQRGSFADLPSEHCMSVNKPSFKSV 184

Query: 140 KAAKPVVSKVI-------IGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPE 192
           K  +P++S  +       IGR+CQHCGA+KTPQWRAGP+GPKTLCNACGVR+KSGRL+PE
Sbjct: 185 KQREPLLSLPLNSAKSASIGRRCQHCGADKTPQWRAGPLGPKTLCNACGVRYKSGRLLPE 244

Query: 193 YRPANSPTFSSELHSNSHRKVVEMRRQKQMMG 224
           YRPANSPTFS  +HSNSHRKV+EMR+QK  +G
Sbjct: 245 YRPANSPTFSPTVHSNSHRKVLEMRKQKIGVG 276

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433393|ref|XP_002285624.1| PREDICTED: GATA transcription factor 1-like [Vitis vinifera]

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 115/197 (58%), Positives = 139/197 (70%), Gaps = 22/197 (11%)

Query: 39  EEELEWLSN--FPTVETFVDI--SSNPNILKQQSPNSVLENSNSSSSTSTNGSTITNGNN 94
           EEELEWL+   FP VETF+D   +S  NI KQQSP SVLENS+ SSS++ + S+ T    
Sbjct: 54  EEELEWLNKDVFPGVETFLDYLPTSVENIPKQQSPISVLENSSHSSSSNNSNSSTTT--- 110

Query: 95  NSNSIIMNCCGNLRVPVRARSKLRTRCRRELLN---QEAWWGSVHGSVKA-------AKP 144
                IM+CC N RVP RARSK R R  ++  +   Q  WW S  G+  A       +K 
Sbjct: 111 -----IMSCCENFRVPSRARSKRRRRRHKDFSDIPGQPWWWWSSQGNTNANHSSPTNSKQ 165

Query: 145 VVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSE 204
            ++   IGRKCQHC AEKTPQWRAGP+GPKTLCNACGVR+KSGRLV EYRPA+SPTFSS+
Sbjct: 166 TITSSTIGRKCQHCQAEKTPQWRAGPLGPKTLCNACGVRYKSGRLVAEYRPASSPTFSSK 225

Query: 205 LHSNSHRKVVEMRRQKQ 221
           +HSNSHRK++EMR+ KQ
Sbjct: 226 VHSNSHRKIMEMRKLKQ 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229571|ref|NP_189047.1| GATA transcription factor 1 [Arabidopsis thaliana] gi|62900367|sp|Q8LAU9.2|GATA1_ARATH RecName: Full=GATA transcription factor 1; Short=AtGATA-1 gi|2959730|emb|CAA73999.1| homologous to GATA-binding transcription factors [Arabidopsis thaliana] gi|9294674|dbj|BAB03023.1| protein homologous to GATA-binding transcription factors [Arabidopsis thaliana] gi|87116628|gb|ABD19678.1| At3g24050 [Arabidopsis thaliana] gi|332643327|gb|AEE76848.1| GATA transcription factor 1 [Arabidopsis thaliana]

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/207 (50%), Positives = 137/207 (66%), Gaps = 26/207 (12%)

Query: 39  EEELEWLSN---FPTVETFVDISSNPNI------------LKQQSPNSVLENSNSSSSTS 83
           EE+LEW+SN   FP +ETFV +  + +             +KQ SP SVLE S+ SS+T+
Sbjct: 58  EEDLEWISNKNAFPVIETFVGVLPSEHFPITSLLEREATEVKQLSPVSVLETSSHSSTTT 117

Query: 84  TNGSTITNGNNNSNSI------IMNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHG 137
           T+ S+  +  + + +       IM+CC   + P +ARSK R         +  W G+  G
Sbjct: 118 TSNSSGGSNGSTAVATTTTTPTIMSCCVGFKAPAKARSKRRRT--GRRDLRVLWTGNEQG 175

Query: 138 SVKAAKPV---VSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYR 194
            ++  K +    + +I+GRKCQHCGAEKTPQWRAGP GPKTLCNACGVR+KSGRLVPEYR
Sbjct: 176 GIQKKKTMTVAAAALIMGRKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYR 235

Query: 195 PANSPTFSSELHSNSHRKVVEMRRQKQ 221
           PANSPTF++ELHSNSHRK+VEMR+Q Q
Sbjct: 236 PANSPTFTAELHSNSHRKIVEMRKQYQ 262

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593190|gb|AAM65139.1| GATA transcription factor 1 (AtGATA-1) [Arabidopsis thaliana]

 Score =  173 bits (438), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 104/207 (50%), Positives = 137/207 (66%), Gaps = 26/207 (12%)

Query: 39  EEELEWLSN---FPTVETFVDISSNPNI------------LKQQSPNSVLENSNSSSSTS 83
           EE+L+W+SN   FP +ETFV +  + +             +KQ SP SVLE S+ SS+T+
Sbjct: 52  EEDLQWISNKNAFPVIETFVGVLPSEHFPITSLLEREATEVKQLSPVSVLETSSHSSTTT 111

Query: 84  TNGSTITNGNNNSNSI------IMNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHG 137
           T+ S+  +  + + +       IM+CC   + P +ARSK R         +  W G+  G
Sbjct: 112 TSNSSGGSNGSTAVATTTTTPTIMSCCVGFKAPAKARSKRRRT--GRRDLRVLWTGNEQG 169

Query: 138 SVKAAKPV---VSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYR 194
            ++  K +    + +I+GRKCQHCGAEKTPQWRAGP GPKTLCNACGVR+KSGRLVPEYR
Sbjct: 170 GIQKKKTMTVAAAALIMGRKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYR 229

Query: 195 PANSPTFSSELHSNSHRKVVEMRRQKQ 221
           PANSPTF++ELHSNSHRK+VEMR+Q Q
Sbjct: 230 PANSPTFTAELHSNSHRKIVEMRKQYQ 256

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835478|ref|XP_002885621.1| hypothetical protein ARALYDRAFT_479930 [Arabidopsis lyrata subsp. lyrata] gi|297331461|gb|EFH61880.1| hypothetical protein ARALYDRAFT_479930 [Arabidopsis lyrata subsp. lyrata]

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/205 (52%), Positives = 137/205 (66%), Gaps = 24/205 (11%)

Query: 39  EEELEWLSN---FPTVETFVDI-----SSNPNILKQQSPNSVLENSNSSSSTSTNGSTIT 90
           EE+LEW+SN   FP +ETFV +            KQ SP SVLE S+ SS+T+T  ++ +
Sbjct: 58  EEDLEWISNKNAFPVIETFVGVLPLSPEREATEGKQLSPVSVLETSSHSSTTTTATTSNS 117

Query: 91  NGNNNSNSI----------IMNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVK 140
           +G +N ++           IM+CC   + P +ARSK R   RR+L     W G+    ++
Sbjct: 118 SGGSNGSTAVATTATTTTTIMSCCVGFKAPAKARSKRRRTGRRDL--GVLWTGNEQVGIQ 175

Query: 141 AAK----PVVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPA 196
             K       + +I+GRKCQHCGAEKTPQWRAGP GPKTLCNACGVR+KSGRLVPEYRPA
Sbjct: 176 KRKTPSVAAAAAMIMGRKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPA 235

Query: 197 NSPTFSSELHSNSHRKVVEMRRQKQ 221
           NSPTF++ELHSNSHRK+VEMR+Q Q
Sbjct: 236 NSPTFTAELHSNSHRKIVEMRKQYQ 260

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481109|ref|XP_003610840.1| GATA transcription factor [Medicago truncatula] gi|355512175|gb|AES93798.1| GATA transcription factor [Medicago truncatula]

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/201 (48%), Positives = 129/201 (64%), Gaps = 19/201 (9%)

Query: 33  SHEECAEEELEWLSN---FPTVETFVDISS-NPNILKQQSPNSVLENSNSSSSTSTNGST 88
           S  E A E+LEWLSN   FP VETFVD S   P+I + Q    ++ENS SSS+++ + ++
Sbjct: 40  SFSEFAVEDLEWLSNKDAFPAVETFVDFSCIQPDISQNQKIAPIVENSTSSSNSNNSSNS 99

Query: 89  ITNGNNNSNSIIMNCCGNLRVPVRARSKLRTRCRRELLN----QEAWWGSVHGSVKAAKP 144
           IT         +++   +++ PVRARSK R++ R  + +    Q AW    + + K    
Sbjct: 100 IT---------LLSGYNHVKFPVRARSKSRSKPRLGISDTWNHQFAWKQPNNKTSKEQAK 150

Query: 145 VVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSE 204
             S   IGR+C HCGA+ TP WR GP GPKTLCNACGVR++SGRLVPEYRPA SPTF + 
Sbjct: 151 QTS--TIGRQCHHCGADNTPLWRTGPGGPKTLCNACGVRYRSGRLVPEYRPAKSPTFCNN 208

Query: 205 LHSNSHRKVVEMRRQKQMMGI 225
           +HSNSHRKVVE+   K  +GI
Sbjct: 209 VHSNSHRKVVEIILSKPHLGI 229

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110743205|dbj|BAE99493.1| GATA transcription factor 1 [Arabidopsis thaliana]

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 77/124 (62%), Positives = 93/124 (75%), Gaps = 5/124 (4%)

Query: 101 MNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPV---VSKVIIGRKCQH 157
           M+CC   + P +ARSK R         +  W G+  G ++  K +    + +I+GRKCQH
Sbjct: 1   MSCCVGFKAPAKARSKRRRT--GRRDLRVLWTGNEQGGIQKKKTMTVAAAALIMGRKCQH 58

Query: 158 CGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMR 217
           CGAEKTPQWRAGP GPKTLCNACGVR+KSGRLVPEYRPANSPTF++ELHSNSHRK+VEMR
Sbjct: 59  CGAEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPANSPTFTAELHSNSHRKIVEMR 118

Query: 218 RQKQ 221
           +Q Q
Sbjct: 119 KQYQ 122

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
TAIR|locus:2076191	274	GATA1 "GATA transcription fact	0.655	0.569	0.520	9.6e-44
TAIR|locus:2123738	308	GATA9 "GATA transcription fact	0.298	0.230	0.802	2.6e-32
TAIR|locus:2080828	312	GATA6 "GATA transcription fact	0.289	0.221	0.797	3.8e-31
TAIR|locus:2139594	269	GATA3 "GATA transcription fact	0.533	0.472	0.496	1.4e-30
TAIR|locus:2155056	339	GATA5 "GATA transcription fact	0.289	0.203	0.840	2.3e-30
TAIR|locus:2055589	264	GATA2 "GATA transcription fact	0.298	0.268	0.788	2.1e-29
TAIR|locus:2082637	322	BME3 "BLUE MICROPYLAR END 3" [	0.285	0.211	0.764	3.7e-29
TAIR|locus:2103346	240	GATA4 "GATA transcription fact	0.289	0.287	0.782	1.9e-28
TAIR|locus:2145259	331	GATA12 "GATA transcription fac	0.294	0.211	0.785	1.9e-28
TAIR|locus:2205100	303	GATA11 "GATA transcription fac	0.289	0.227	0.768	3.5e-27

TAIR|locus:2076191 GATA1 "GATA transcription factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
 Identities = 87/167 (52%), Positives = 100/167 (59%)

Query:    64 LKQQSPNSVLEXXXXXXXXXXXXXX------XXXXXXXXXXXXMNCCGNLRVPVRARSKL 117
             +KQ SP SVLE                                M+CC   + P +ARSK 
Sbjct:    98 VKQLSPVSVLETSSHSSTTTTSNSSGGSNGSTAVATTTTTPTIMSCCVGFKAPAKARSKR 157

Query:   118 RTRCRRELLNQEAWWGSVHGXXX---XXXXXXXXXIIGRKCQHCGAEKTPQWRAGPMGPK 174
             R   RR+L  +  W G+  G               I+GRKCQHCGAEKTPQWRAGP GPK
Sbjct:   158 RRTGRRDL--RVLWTGNEQGGIQKKKTMTVAAAALIMGRKCQHCGAEKTPQWRAGPAGPK 215

Query:   175 TLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQ 221
             TLCNACGVR+KSGRLVPEYRPANSPTF++ELHSNSHRK+VEMR+Q Q
Sbjct:   216 TLCNACGVRYKSGRLVPEYRPANSPTFTAELHSNSHRKIVEMRKQYQ 262

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:2123738 GATA9 "GATA transcription factor 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
 Identities = 57/71 (80%), Positives = 63/71 (88%)

Query:   152 GRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHR 211
             GR+C HC  EKTPQWR GPMGPKTLCNACGVR+KSGRLVPEYRPA+SPTF    HSNSHR
Sbjct:   196 GRRCLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVMARHSNSHR 255

Query:   212 KVVEMRRQKQM 222
             KV+E+RRQK+M
Sbjct:   256 KVMELRRQKEM 266

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2080828 GATA6 "GATA transcription factor 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
 Identities = 55/69 (79%), Positives = 63/69 (91%)

Query:   153 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRK 212
             R+C HCG +KTPQWRAGP+G KTLCNACGVR+KSGRL+PEYRPA SPTFSSELHSN H K
Sbjct:   221 RQCGHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHSK 280

Query:   213 VVEMRRQKQ 221
             V+EMRR+K+
Sbjct:   281 VIEMRRKKE 289

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2139594 GATA3 "GATA transcription factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 69/139 (49%), Positives = 84/139 (60%)

Query:   108 RVPVRARSKLRTRCRRELLNQEAW----WGSVHGXXXXXXXXXXXXII--GRKCQHCGAE 161
             R+PV+ R+K   R R  L     W        H             ++   R+C HCG  
Sbjct:   132 RIPVKPRTK---RSRNSLTGSRVWPLVSTNHQHAATEQLRKKKQETVLVFQRRCSHCGTN 188

Query:   162 KTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQ 221
              TPQWR GP+GPKTLCNACGVRFKSGRL PEYRPA+SPTFS+E+HSN HRKV+E+R+ K+
Sbjct:   189 NTPQWRTGPVGPKTLCNACGVRFKSGRLCPEYRPADSPTFSNEIHSNLHRKVLELRKSKE 248

Query:   222 MMGIELGVLGVK--PVDKG 238
             + G E G    K  PV  G
Sbjct:   249 L-GEETGEASTKSDPVKFG 266

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:2155056 GATA5 "GATA transcription factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 58/69 (84%), Positives = 64/69 (92%)

Query:   153 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRK 212
             RKC HCG +KTPQWRAGPMG KTLCNACGVR+KSGRL+PEYRPA SPTFSSELHSN HRK
Sbjct:   249 RKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRK 308

Query:   213 VVEMRRQKQ 221
             V+EMRR+K+
Sbjct:   309 VIEMRRKKE 317

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

TAIR|locus:2055589 GATA2 "GATA transcription factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 56/71 (78%), Positives = 64/71 (90%)

Query:   153 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRK 212
             R+C HC +EKTPQWR GP+GPKTLCNACGVRFKSGRLVPEYRPA+SPTF    HSNSHRK
Sbjct:   179 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFVLTQHSNSHRK 238

Query:   213 VVEMRRQKQMM 223
             V+E+RRQK++M
Sbjct:   239 VMELRRQKEVM 249

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2082637 BME3 "BLUE MICROPYLAR END 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
 Identities = 52/68 (76%), Positives = 57/68 (83%)

Query:   153 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRK 212
             RKC HC   KTPQWR GPMGPKTLCNACGVR+KSGRL PEYRPA SPTF+  LHSNSH+K
Sbjct:   229 RKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFTPALHSNSHKK 288

Query:   213 VVEMRRQK 220
             V EMR ++
Sbjct:   289 VAEMRNKR 296

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009845 "seed germination" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:2103346 GATA4 "GATA transcription factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 54/69 (78%), Positives = 62/69 (89%)

Query:   153 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRK 212
             R+C HC +EKTPQWR GP+GPKTLCNACGVR+KSGRLVPEYRPA+SPTF    HSNSHRK
Sbjct:   158 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRK 217

Query:   213 VVEMRRQKQ 221
             V+E+RRQK+
Sbjct:   218 VMELRRQKE 226

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2145259 GATA12 "GATA transcription factor 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 55/70 (78%), Positives = 61/70 (87%)

Query:   153 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRK 212
             R+C HC  +KTPQWR GPMGPKTLCNACGVR+KSGRLVPEYRPA SPTF    HSNSHRK
Sbjct:   219 RRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLAKHSNSHRK 278

Query:   213 VVEMRRQKQM 222
             V+E+RRQK+M
Sbjct:   279 VMELRRQKEM 288

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2205100 GATA11 "GATA transcription factor 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 53/69 (76%), Positives = 59/69 (85%)

Query:   151 IGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSH 210
             I RKC HC   KTPQWR GP GPKTLCNACGVRF+SGRLVPEYRPA+SPTF   +HSNSH
Sbjct:   218 IVRKCTHCETTKTPQWREGPSGPKTLCNACGVRFRSGRLVPEYRPASSPTFIPAVHSNSH 277

Query:   211 RKVVEMRRQ 219
             RK++EMRR+
Sbjct:   278 RKIIEMRRK 286

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LAU9	GATA1_ARATH	No assigned EC number	0.5072	0.7605	0.6605	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	238
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	8e-14
pfam00320	36	pfam00320, GATA, GATA zinc finger	1e-13
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	5e-12

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 63.6 bits (155), Expect = 8e-14
 Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 151 IGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSS 203
            GR C +CG  +TP WR GP G KTLCNACG+ +K    +   RP +      
Sbjct: 2   SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLK--RPLSLKKDGI 52

Length = 52

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 62.7 bits (153), Expect = 1e-13
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 155 CQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLV 190
           C +CG  KTP WR GP G +TLCNACG+ ++   L 
Sbjct: 1   CSNCGTTKTPLWRRGPDGNRTLCNACGLYYRKHGLK 36

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 58.9 bits (143), Expect = 5e-12
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 154 KCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFS 202
            C +CG   TP WR GP G  TLCNACG+ +K        RP +     
Sbjct: 1   ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHG---VMRPLSKRKKD 46

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	238
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.51
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.5
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.44
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	99.11
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	97.93
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	90.82
PF01783	56	Ribosomal_L32p: Ribosomal L32p protein family; Int	81.76
PRK12286	57	rpmF 50S ribosomal protein L32; Reviewed	80.62

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.51  E-value=7.8e-15  Score=104.57  Aligned_cols=44  Identities=45%  Similarity=0.998  Sum_probs=38.6

Q ss_pred             eeccCCCCCCCCcccCCCCCcccchhhhhhhhcCCCCCCCCCCCCCC
Q 026433          154 KCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPT  200 (238)
Q Consensus       154 ~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk~rllp~yrpa~sPt  200 (238)
                      .|+||++++||+||+||+|..+||||||++|++++   .+||...+.
T Consensus         1 ~C~~C~~~~Tp~WR~g~~~~~~LCNaCgl~~~k~~---~~rp~~~~~   44 (54)
T cd00202           1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHG---VMRPLSKRK   44 (54)
T ss_pred             CCCCCCCCCCcccccCCCCcchHHHHHHHHHHhcC---CCCCcccCc
Confidence            49999999999999999998999999999999876   567766554

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.50  E-value=1.3e-14  Score=102.46  Aligned_cols=40  Identities=53%  Similarity=1.136  Sum_probs=36.1

Q ss_pred             CCceeccCCCCCCCCcccCCCCCcccchhhhhhhhcCCCC
Q 026433          151 IGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLV  190 (238)
Q Consensus       151 ~~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk~rll  190 (238)
                      ..+.|+||++++||+||+||.|..+|||||||+|++.+.+
T Consensus         2 ~~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~~   41 (52)
T smart00401        2 SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGL   41 (52)
T ss_pred             CCCCcCCCCCCCCCccccCCCCCCcEeecccHHHHHcCCC
Confidence            3578999999999999999999889999999999985543

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.44  E-value=1.5e-14  Score=95.33  Aligned_cols=35  Identities=54%  Similarity=1.216  Sum_probs=27.9

Q ss_pred             eccCCCCCCCCcccCCCCCcccchhhhhhhhcCCC
Q 026433          155 CQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRL  189 (238)
Q Consensus       155 C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk~rl  189 (238)
                      |.||++++||+||+||.|..+||||||++|++++.
T Consensus         1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk~~~   35 (36)
T PF00320_consen    1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKKYGK   35 (36)
T ss_dssp             -TTT--ST-SSEEEETTSEE-EEHHHHHHHHHHSS
T ss_pred             CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHHhCC
Confidence            89999999999999999988899999999998654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=99.11  E-value=7.4e-11  Score=96.84  Aligned_cols=71  Identities=59%  Similarity=1.176  Sum_probs=61.5

Q ss_pred             CceeccCCCCCCCCcccCCCCCcccchhhhhhhhcC---CCCCCCCCCCCCC--------------CCcccccc------
Q 026433          152 GRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSG---RLVPEYRPANSPT--------------FSSELHSN------  208 (238)
Q Consensus       152 ~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk~---rllp~yrpa~sPt--------------f~~~~hsn------  208 (238)
                      ...|.+|+++.||+||+++.|++.+|||||++|+++   +.++.++.+..++              +....|.+      
T Consensus       199 ~~~c~~~~~~~t~~~r~~~~g~~~~cnacgl~~k~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (340)
T KOG1601|consen  199 LRQCSNCGTTKTPLWRRGPEGPKSLCNACGLRYKKGGVRRPLPEKRPASSPRNVSPKGSGAVKGRTFTKSLHSNSAQLLL  278 (340)
T ss_pred             CcccCCCCCCCCcceecCCCCCccccccchhhhhhcCccccccccCccccccccCCCccccccCCCCCcccccchhhhhh
Confidence            589999999999999999999999999999999997   7888999888877              44455555      


Q ss_pred             -----------hhHHHHHHHHhccc
Q 026433          209 -----------SHRKVVEMRRQKQM  222 (238)
Q Consensus       209 -----------~hrkv~~~R~qk~~  222 (238)
                                 .|.++.++++.+..
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~r~~~~  303 (340)
T KOG1601|consen  279 APSKSEPPLLSSHQRVAEVRRYRES  303 (340)
T ss_pred             hhcccCccccccchHHHHHhhccCc
Confidence                       78889988888764

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=97.93  E-value=4.2e-06  Score=82.30  Aligned_cols=54  Identities=30%  Similarity=0.534  Sum_probs=42.3

Q ss_pred             CceeccCCCCCCCCcccCCCC----CcccchhhhhhhhcCCCCCCCCCCCCCCCCccccc
Q 026433          152 GRKCQHCGAEKTPQWRAGPMG----PKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHS  207 (238)
Q Consensus       152 ~r~C~nCgtt~TP~WRrGP~G----~~~LCNACGL~ykk~rllp~yrpa~sPtf~~~~hs  207 (238)
                      ...|.||.++.||+|||+..+    .-+|||||||+|+-++..-+  |...++...+-|.
T Consensus       158 ~~vc~Nc~t~stPlwrR~~~~~s~~~n~lcnaCgl~~klhg~~r~--P~t~ks~~~ks~~  215 (498)
T COG5641         158 PHVCSNCKTTSTPLWRRASSESSLPGNNLCNACGLYLKLHGSPRA--PISLKSDSIKSRS  215 (498)
T ss_pred             cchhccccccCCccccccccccccCCccccccccccccccCCcCC--Ccccccccccccc
Confidence            448999999999999999993    38999999999987665432  6666666655544

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=90.82  E-value=0.18  Score=50.72  Aligned_cols=39  Identities=33%  Similarity=0.712  Sum_probs=33.1

Q ss_pred             CCceeccCCCCCCCCc--ccCCCCCcccchhhhhhhhc-CCC
Q 026433          151 IGRKCQHCGAEKTPQW--RAGPMGPKTLCNACGVRFKS-GRL  189 (238)
Q Consensus       151 ~~r~C~nCgtt~TP~W--RrGP~G~~~LCNACGL~ykk-~rl  189 (238)
                      .++.|.+|++++.-+|  .-+|+..+.||-.|-++|+| +++
T Consensus       385 ~g~~CEsC~ttqs~qWYsWGppnmqcrLCasCWiyWKKygGL  426 (693)
T KOG3554|consen  385 DGRACESCYTTQSLQWYSWGPPNMQCRLCASCWIYWKKYGGL  426 (693)
T ss_pred             CCCcccccccccccceeccCCCCccchhhHHHHHHHHHhcCc
Confidence            4789999999999999  55667777999999999998 444

>PF01783 Ribosomal_L32p: Ribosomal L32p protein family; InterPro: IPR002677 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=81.76  E-value=0.41  Score=34.29  Aligned_cols=48  Identities=42%  Similarity=0.743  Sum_probs=27.2

Q ss_pred             CCCCCCCCCccccccccccccccccCcCCCcCCCCCCCcCCCCCceeccCCCCCCCCcccCCCCCcccchhhhhhhh
Q 026433          109 VPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPVVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFK  185 (238)
Q Consensus       109 vP~raRSKR~R~~~~~~~~~~~~~~~~~~~~kk~k~~~~~~~~~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~yk  185 (238)
                      ||-++.|+.+++.++.     -|.+..              .....|.+||...         -++.+|.+|| +|+
T Consensus         2 vPKrk~Sksr~~~Rrs-----~~~l~~--------------~~l~~c~~cg~~~---------~~H~vc~~cG-~y~   49 (56)
T PF01783_consen    2 VPKRKTSKSRKRMRRS-----HWKLKA--------------PNLVKCPNCGEPK---------LPHRVCPSCG-YYK   49 (56)
T ss_dssp             --SS-SCHHHHHHHTT-----TTS--T--------------TSEEESSSSSSEE---------STTSBCTTTB-BSS
T ss_pred             CCCCcCChhHccchhc-----cccccc--------------cceeeeccCCCEe---------cccEeeCCCC-eEC
Confidence            5667677666666653     121111              1346799999643         3479999999 444

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L32p is part of the 50S ribosomal subunit. This family is found in both prokaryotes and eukaryotes. Ribosomal protein L32 of yeast binds to and regulates the splicing and the translation of the transcript of its own gene [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit; PDB: 3PYT_2 3F1F_5 3PYV_2 3D5B_5 3MRZ_2 3D5D_5 3F1H_5 1VSP_Y 3PYR_2 3MS1_2 ....

>PRK12286 rpmF 50S ribosomal protein L32; Reviewed

Probab=80.62  E-value=1.6  Score=31.76  Aligned_cols=49  Identities=37%  Similarity=0.561  Sum_probs=31.4

Q ss_pred             CCCCCCCCCCccccccccccccccccCcCCCcCCCCCCCcCCCCCceeccCCCCCCCCcccCCCCCcccchhhhhhh
Q 026433          108 RVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPVVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRF  184 (238)
Q Consensus       108 ~vP~raRSKR~R~~~~~~~~~~~~~~~~~~~~kk~k~~~~~~~~~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~y  184 (238)
                      .+|-+.-|+.+++.++.-     |..              .....-.|.+||...-|         +.+|..||.|-
T Consensus         2 AvPKrk~S~srr~~RRsh-----~~l--------------~~~~l~~C~~CG~~~~~---------H~vC~~CG~Y~   50 (57)
T PRK12286          2 AVPKRKTSKSRKRKRRAH-----FKL--------------KAPGLVECPNCGEPKLP---------HRVCPSCGYYK   50 (57)
T ss_pred             CcCcCcCChhhcchhccc-----ccc--------------cCCcceECCCCCCccCC---------eEECCCCCcCC
Confidence            467777776666665531     100              12234579999987655         89999999543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	238
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	1e-12
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	6e-11
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	1e-08
3dfx_A	63	Trans-acting T-cell-specific transcription factor	5e-07
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	8e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 60.7 bits (147), Expect = 1e-12
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 152 GRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPA 196
             +C +C   +T +WR         CNAC +  +      + RP 
Sbjct: 8   SFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQR---KYNKTRPV 49

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 55.1 bits (133), Expect = 6e-11
 Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 152 GRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFK 185
            R+C +CGA  TP WR    G   LCNACG+  K
Sbjct: 4   ARECVNCGATATPLWRRDRTG-HYLCNACGLYHK 36

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 48.6 bits (116), Expect = 1e-08
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 153 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFK 185
             C +C  + TP WR  P G + LCNACG+  K
Sbjct: 2   TTCTNCFTQTTPLWRRNPEG-QPLCNACGLFLK 33

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 45.0 bits (106), Expect = 5e-07
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 152 GRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFK 185
           G  C +C    T  WR    G   +CNACG+ +K
Sbjct: 7   GTSCANCQTTTTTLWRRNANG-DPVCNACGLYYK 39

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 44.3 bits (104), Expect = 8e-07
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 152 GRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPAN 197
              C +C  + TP WR  P G + LCNACG+  K   L    RP +
Sbjct: 9   PTTCTNCFTQTTPLWRRNPEG-QPLCNACGLFLK---LHGVVRPLS 50

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 29/195 (14%), Positives = 56/195 (28%), Gaps = 40/195 (20%)

Query: 4   KTVLPFLKINSGRAFVEFNVQVSLFFLAVSHEECAEEELEWLSNF-----PTVETFVDIS 58
           KT +      S +   + + ++  F+L + +    E  LE L        P   +  D S
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKI--FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 59  SNP------------NILKQQS-PNS--VLENSNSSSSTST--NGSTI---TNGNNNSNS 98
           SN              +LK +   N   VL N  ++ + +       I   T     ++ 
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 99  IIMNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPVVSKV------IIG 152
           +           +       T    E+ +    +  +    +     V         II 
Sbjct: 281 LS----AATTTHISLDHHSMTLTPDEVKSLLLKY--LDCRPQDLPREVLTTNPRRLSIIA 334

Query: 153 RKCQHCGAEKTPQWR 167
              +  G      W+
Sbjct: 335 ESIRD-GLATWDNWK 348

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	238
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.61
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.57
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.57
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.54
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.51
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.46
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.2
2zjr_Z	60	50S ribosomal protein L32; ribosome, large ribosom	80.12

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.61  E-value=4.6e-17  Score=118.92  Aligned_cols=43  Identities=35%  Similarity=0.821  Sum_probs=37.4

Q ss_pred             CCCceeccCCCCCCCCcccCCCCCcccchhhhhhhhcCCCCCCCCCC
Q 026433          150 IIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPA  196 (238)
Q Consensus       150 ~~~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk~rllp~yrpa  196 (238)
                      .....|+||++++||+||+||+|+ +|||||||+|++++.   +||.
T Consensus         5 ~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~---~RP~   47 (63)
T 3dfx_A            5 RAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHNI---NRPL   47 (63)
T ss_dssp             CTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSS---CCCG
T ss_pred             CCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcCC---CCCc
Confidence            446789999999999999999996 999999999999765   4553

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.57  E-value=4.3e-16  Score=106.11  Aligned_cols=37  Identities=43%  Similarity=0.944  Sum_probs=33.9

Q ss_pred             ceeccCCCCCCCCcccCCCCCcccchhhhhhhhcCCCC
Q 026433          153 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLV  190 (238)
Q Consensus       153 r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk~rll  190 (238)
                      +.|++|++++||+||+||+|+ +|||||||+|++++..
T Consensus         2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~   38 (43)
T 2vut_I            2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVV   38 (43)
T ss_dssp             CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSSC
T ss_pred             CcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCCC
Confidence            579999999999999999996 9999999999986654

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.57  E-value=9.9e-16  Score=105.71  Aligned_cols=39  Identities=44%  Similarity=0.863  Sum_probs=35.1

Q ss_pred             CCceeccCCCCCCCCcccCCCCCcccchhhhhhhhcCCCC
Q 026433          151 IGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLV  190 (238)
Q Consensus       151 ~~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk~rll  190 (238)
                      ..+.|+||++++||+||+||+|+ +|||||||+|++++..
T Consensus         3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~   41 (46)
T 1gnf_A            3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQN   41 (46)
T ss_dssp             CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCSC
T ss_pred             CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCCC
Confidence            45789999999999999999995 9999999999986653

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.54  E-value=2.6e-15  Score=111.92  Aligned_cols=44  Identities=25%  Similarity=0.431  Sum_probs=34.3

Q ss_pred             CCCCceeccCCCCCCCCcccCCCCCcccchhhhhhhhcCCCCCCCCC
Q 026433          149 VIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRP  195 (238)
Q Consensus       149 ~~~~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk~rllp~yrp  195 (238)
                      ......|+||++++||+||+|+.+..+|||||||+|++++.   +||
T Consensus         5 ~~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~~---~RP   48 (71)
T 2kae_A            5 NKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNK---TRP   48 (71)
T ss_dssp             ---CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHHS---CCC
T ss_pred             CCCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhCC---CCC
Confidence            34568899999999999999654445999999999998553   466

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.51  E-value=3.6e-15  Score=109.66  Aligned_cols=39  Identities=38%  Similarity=0.791  Sum_probs=35.2

Q ss_pred             CCCceeccCCCCCCCCcccCCCCCcccchhhhhhhhcCCC
Q 026433          150 IIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRL  189 (238)
Q Consensus       150 ~~~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk~rl  189 (238)
                      .....|+||++++||+||+||+|. +|||||||+|++++.
T Consensus         7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~   45 (66)
T 4gat_A            7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGV   45 (66)
T ss_dssp             SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCS
T ss_pred             CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCC
Confidence            456899999999999999999995 999999999998554

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.46  E-value=5.3e-15  Score=118.22  Aligned_cols=49  Identities=27%  Similarity=0.656  Sum_probs=40.6

Q ss_pred             CCCCCCcCCCCCceeccCCCCCCCCcccCCCCCcccchhhhhhhhcCCCC
Q 026433          141 AAKPVVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLV  190 (238)
Q Consensus       141 k~k~~~~~~~~~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk~rll  190 (238)
                      ++++..........|+||+++.||+||+||+| ++|||||||+|++++..
T Consensus        48 pKKR~~~~~~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~   96 (115)
T 4hc9_A           48 PKRRLSAARRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNIN   96 (115)
T ss_dssp             CCCCCCCCCCTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSC
T ss_pred             ccccccccccccccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCCC
Confidence            33444444566789999999999999999999 99999999999986553

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.20  E-value=5.2e-12  Score=100.90  Aligned_cols=36  Identities=50%  Similarity=1.097  Sum_probs=32.2

Q ss_pred             CCceeccCCCCCCCCcccCCCCCcccchhhhhhhhcC
Q 026433          151 IGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSG  187 (238)
Q Consensus       151 ~~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk~  187 (238)
                      ..+.|+||++++||+||+||+| .+|||||||+|+.+
T Consensus         4 ~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~   39 (115)
T 4hc9_A            4 MGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMN   39 (115)
T ss_dssp             --CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHH
T ss_pred             CCCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhc
Confidence            4678999999999999999999 89999999999863

>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...

Probab=80.12  E-value=1.1  Score=31.76  Aligned_cols=48  Identities=25%  Similarity=0.421  Sum_probs=32.2

Q ss_pred             CCCCCCCCCCCccccccccccccccccCcCCCcCCCCCCCcCCCCCceeccCCCCCCCCcccCCCCCcccchhhhh
Q 026433          107 LRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPVVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGV  182 (238)
Q Consensus       107 l~vP~raRSKR~R~~~~~~~~~~~~~~~~~~~~kk~k~~~~~~~~~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL  182 (238)
                      ..||-+..||.+++.++.-     |.+              .......|.+||...-         ++.+|-.||.
T Consensus         4 MAVPKrK~Sksrr~~RRsh-----~kl--------------~~p~l~~c~~cG~~~~---------pH~vc~~CG~   51 (60)
T 2zjr_Z            4 HPVPKKKTSKSKRDMRRSH-----HAL--------------TAPNLTECPQCHGKKL---------SHHICPNCGY   51 (60)
T ss_dssp             CSCCSSCCCTTHHHHHTTT-----CCC--------------CCCCCEECTTTCCEEC---------TTBCCTTTCB
T ss_pred             cccCCCCCChHHhhhhccc-----ccc--------------cCCCceECCCCCCEeC---------CceEcCCCCc
Confidence            4688888888877777631     111              1234567999997632         3789999993

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	238
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	9e-13
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	9e-10
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	2e-09

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.6 bits (142), Expect = 9e-13
 Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 152 GRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFK 185
            R+C +CGA  TP WR    G   LCNACG+  K
Sbjct: 2   ARECVNCGATATPLWRRDRTG-HYLCNACGLYHK 34

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 50.6 bits (121), Expect = 9e-10
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 155 CQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPAN 197
           C +C  + TP WR  P G + LCNACG+  K   L    RP +
Sbjct: 3   CTNCFTQTTPLWRRNPEG-QPLCNACGLFLK---LHGVVRPLS 41

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.8 bits (121), Expect = 2e-09
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 152 GRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHR 211
           G  C +C    T  WR  PMG   +CNACG+ +K  ++    RP    T   +     +R
Sbjct: 4   GTVCSNCQTSTTTLWRRSPMG-DPVCNACGLYYKLHQV---NRP---LTMRKDGIQTRNR 56

Query: 212 KVVEMRRQKQ 221
           KV    ++++
Sbjct: 57  KVSSKGKKRR 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	238
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.64
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.6
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.59
d2zjrz1	58	Ribosomal protein L32p {Deinococcus radiodurans [T	83.53
d2j0151	59	Ribosomal protein L32p {Thermus thermophilus [TaxI	80.91
d1neea2	37	Zinc-binding domain of translation initiation fact	80.04

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=1.9e-17  Score=109.67  Aligned_cols=36  Identities=47%  Similarity=1.010  Sum_probs=33.4

Q ss_pred             CceeccCCCCCCCCcccCCCCCcccchhhhhhhhcCC
Q 026433          152 GRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGR  188 (238)
Q Consensus       152 ~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk~r  188 (238)
                      .+.|.||++++||+||+||+| ++|||||||+|+.++
T Consensus         2 ~r~C~~Cgtt~Tp~WR~gp~G-~~LCNACGl~~r~~G   37 (39)
T d1y0ja1           2 ARECVNCGATATPLWRRDRTG-HYLCNACGLYHKMNG   37 (39)
T ss_dssp             CCCCSSSCCCCCSCCEECTTS-CEECSSHHHHHHHSC
T ss_pred             cCCCCCCCCCCCcccccCCCC-CEeeHHhHHHHHHhC
Confidence            578999999999999999999 799999999999754

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.60  E-value=9.4e-17  Score=107.77  Aligned_cols=34  Identities=44%  Similarity=0.995  Sum_probs=31.6

Q ss_pred             eeccCCCCCCCCcccCCCCCcccchhhhhhhhcCC
Q 026433          154 KCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGR  188 (238)
Q Consensus       154 ~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk~r  188 (238)
                      .|+||++++||+||+||+| ++|||||||+|++++
T Consensus         2 ~C~nC~tt~Tp~WRr~~~G-~~lCNACGl~~k~~g   35 (42)
T d2vuti1           2 TCTNCFTQTTPLWRRNPEG-QPLCNACGLFLKLHG   35 (42)
T ss_dssp             CCSSSCCCCCSCCEECTTS-CEECHHHHHHHHHHS
T ss_pred             cCCCCCCCCCccceeCCCC-CCchhhhhHHHHHcC
Confidence            5999999999999999999 899999999998744

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.59  E-value=3.5e-17  Score=118.89  Aligned_cols=37  Identities=41%  Similarity=1.022  Sum_probs=33.9

Q ss_pred             CceeccCCCCCCCCcccCCCCCcccchhhhhhhhcCCC
Q 026433          152 GRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRL  189 (238)
Q Consensus       152 ~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk~rl  189 (238)
                      +..|+||++++||+||+||+| ++|||||||||++++.
T Consensus         4 g~~C~nCgt~~Tp~WRr~~~G-~~lCNACGl~~~~~~~   40 (66)
T d3gata_           4 GTVCSNCQTSTTTLWRRSPMG-DPVCNACGLYYKLHQV   40 (66)
T ss_dssp             TCCCTTTCCCCCSSEEECTTS-CEEEHHHHHHHHHHCS
T ss_pred             CCCCCCCCCCCCcccccCCCC-CcccchhHHHHHHhCC
Confidence            567999999999999999999 7999999999998554

>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus radiodurans [TaxId: 1299]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L32p
domain: Ribosomal protein L32p
species: Deinococcus radiodurans [TaxId: 1299]

Probab=83.53  E-value=0.37  Score=32.55  Aligned_cols=49  Identities=24%  Similarity=0.400  Sum_probs=30.8

Q ss_pred             CCCCCCCCCCCccccccccccccccccCcCCCcCCCCCCCcCCCCCceeccCCCCCCCCcccCCCCCcccchhhhhh
Q 026433          107 LRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPVVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVR  183 (238)
Q Consensus       107 l~vP~raRSKR~R~~~~~~~~~~~~~~~~~~~~kk~k~~~~~~~~~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~  183 (238)
                      .+||-+.-||.++..++.-     |.+              .......|.+||...-         ++.+|-.||.|
T Consensus         3 ~pVPKrk~SksRr~~RRsh-----~~l--------------~~p~l~~C~~CG~~~l---------pHrvC~~CG~Y   51 (58)
T d2zjrz1           3 HPVPKKKTSKSKRDMRRSH-----HAL--------------TAPNLTECPQCHGKKL---------SHHICPNCGYY   51 (58)
T ss_dssp             CSCCSSCCCTTHHHHHTTT-----CCC--------------CCCCCEECTTTCCEEC---------TTBCCTTTCBS
T ss_pred             CCCCCCccCcccchhhhhh-----hhh--------------cCCceeECCCCCCCcc---------ceeeCCCCCcC
Confidence            4677777777777666520     111              1123467999998543         37899999943

>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus thermophilus [TaxId: 274]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L32p
domain: Ribosomal protein L32p
species: Thermus thermophilus [TaxId: 274]

Probab=80.91  E-value=0.34  Score=32.83  Aligned_cols=54  Identities=35%  Similarity=0.549  Sum_probs=32.7

Q ss_pred             CCCCCCCCCCCccccccccccccccccCcCCCcCCCCCCCcCCCCCceeccCCCCCCCCcccCCCCCcccchhhhhhhhc
Q 026433          107 LRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPVVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKS  186 (238)
Q Consensus       107 l~vP~raRSKR~R~~~~~~~~~~~~~~~~~~~~kk~k~~~~~~~~~r~C~nCgtt~TP~WRrGP~G~~~LCNACGL~ykk  186 (238)
                      .+||-+.-||.+++.++.-     |.+.              ......|.+||...         -++.+|-.||. | +
T Consensus         3 ~pVPKrk~Sksr~~~RRsh-----~~l~--------------~p~l~~C~~CG~~~---------~pHrvC~~CG~-Y-k   52 (59)
T d2j0151           3 HPVPKKKTSKARRDARRSH-----HALT--------------PPTLVPCPECKAMK---------PPHTVCPECGY-Y-A   52 (59)
T ss_dssp             SSCCSSCCCHHHHHHHHGG-----GCCC--------------CCCCBCCSSSSSCB---------CTTCBCTTTCC-S-S
T ss_pred             CCCCCCcccchhchhhhcc-----cccc--------------CCceeECCCCCCcc---------cceeECCCCCe-E-C
Confidence            4677777777776666531     1111              12246799999843         34779999994 3 4


Q ss_pred             CCCC
Q 026433          187 GRLV  190 (238)
Q Consensus       187 ~rll  190 (238)
                      |+.+
T Consensus        53 Gr~V   56 (59)
T d2j0151          53 GRKV   56 (59)
T ss_dssp             SCCS
T ss_pred             CEEe
Confidence            4444

>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Small proteins
fold: Zinc-binding domain of translation initiation factor 2 beta
superfamily: Zinc-binding domain of translation initiation factor 2 beta
family: Zinc-binding domain of translation initiation factor 2 beta
domain: Zinc-binding domain of translation initiation factor 2 beta
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=80.04  E-value=0.25  Score=30.99  Aligned_cols=29  Identities=31%  Similarity=0.732  Sum_probs=23.1

Q ss_pred             eeccCCCCCCCCcccCCCCCcccchhhhhh
Q 026433          154 KCQHCGAEKTPQWRAGPMGPKTLCNACGVR  183 (238)
Q Consensus       154 ~C~nCgtt~TP~WRrGP~G~~~LCNACGL~  183 (238)
                      .|..|+..+|-+=+.+--- -.-|+|||-.
T Consensus         3 ~C~~C~spDT~l~ke~R~~-~l~C~aCGa~   31 (37)
T d1neea2           3 ICHECNRPDTRIIREGRIS-LLKCEACGAK   31 (37)
T ss_dssp             HHTCCSSCSSCCEEETTTT-EEECSTTSCC
T ss_pred             ECCCCCCCCCEEEEcCCEE-EEEeccCCCC
Confidence            5999999999999875322 4679999965