Citrus Sinensis ID: 026442

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
MSSLPLYEKVIAKNTTHRFLDVTILFLLLSLLFYRLLSLKHNGFAWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQRLQERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAANNSTSFDLTGELEVFFNTECQNHPTIIKVITS
cccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccEEEEcccccccHHHHHHccccccEEEEEccccccccHHHHHHHHHHHHHccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEccc
cccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccccEEEEcccccccccEEEHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEcc
MSSLPLYEKVIAkntthrflDVTILFLLLSLLFYRLLSLKHNGFAWFVAFLCESCFTFVWVLITgtkwtpisyntyPQRLQERikelppldifvttadpyleppiltVNTVLSLLAvdypahrlacyvsddgcsplnFYSLVEASKFAKLWVPfckkynirvrapfryflresdeppcasswEFQQDWEKMKEEYERLCGNIEaaannstsfdltGELEVFFNtecqnhptiikvits
MSSLPLYEKVIAkntthrfldVTILFLLLSLLFYRLLSLKHNGFAWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQRLQERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLresdeppcasSWEFQQDWEKMKEEYERLCGNIEAAANNSTSFDLTGELEVFFntecqnhptiikvits
MSSLPLYEKVIAKNTTHRFLDVTIlflllsllfyrllslKHNGFAWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQRLQERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAANNSTSFDLTGELEVFFNTECQNHPTIIKVITS
*****LYEKVIAKNTTHRFLDVTILFLLLSLLFYRLLSLKHNGFAWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQRLQERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAANNSTSFDLTGELEVFFNTECQNHPTIIKVI**
**SLPLYEKVIAKNTTHRFLDVTILFLLLSLLFYRLLSLKHNGFAWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQRLQERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLR***************DWEKMKEEYERLCGNIEAAAN******************CQNHPTIIKVITS
MSSLPLYEKVIAKNTTHRFLDVTILFLLLSLLFYRLLSLKHNGFAWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQRLQERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAANNSTSFDLTGELEVFFNTECQNHPTIIKVITS
***LPLYEKVIAKNTTHRFLDVTILFLLLSLLFYRLLSLKHNGFAWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQRLQERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAANNSTSFDLTGELEVFFNTECQNHPTIIKVITS
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSSLPLYEKVIAKNTTHRFLDVTILFLLLSLLFYRLLSLKHNGFAWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQRLQERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAANNSTSFDLTGELEVFFNTECQNHPTIIKVITS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query238 2.2.26 [Sep-21-2011]
Q8RX83 755 Cellulose synthase-like p yes no 0.957 0.301 0.592 3e-75
O23386 757 Cellulose synthase-like p no no 0.970 0.305 0.559 8e-72
O80899 757 Cellulose synthase-like p no no 0.957 0.301 0.592 1e-71
O80891 755 Cellulose synthase-like p no no 0.962 0.303 0.590 8e-70
O80898 757 Cellulose synthase-like p no no 0.966 0.303 0.521 2e-64
Q0WT40 757 Cellulose synthase-like p no no 0.957 0.301 0.536 2e-59
Q339N5 750 Cellulose synthase-like p yes no 0.953 0.302 0.525 3e-55
Q7PC71 762 Cellulose synthase-like p N/A no 0.810 0.253 0.468 7e-43
Q7XUT9 762 Cellulose synthase-like p no no 0.810 0.253 0.468 8e-43
Q9SWW6 1026 Cellulose synthase A cata no no 0.970 0.225 0.387 7e-38
>sp|Q8RX83|CSLB3_ARATH Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1 Back     alignment and function desciption
 Score =  281 bits (719), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 138/233 (59%), Positives = 171/233 (73%), Gaps = 5/233 (2%)

Query: 5   PLYEKVIAKNTTHRFLDVTILFLLLSLLFYRLLSLKHNGFAWFVAFLCESCFTFVWVLIT 64
           PL EK+  KN   R +D+TIL  L SLL YR+L +  N   W VAFLCES F+F+W+LIT
Sbjct: 10  PLCEKISYKNYFLRVVDLTILGFLFSLLLYRILLMNQNNSVWVVAFLCESFFSFIWLLIT 69

Query: 65  GTKWTPISYNTYPQRLQERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRL 124
             KW+P SY +YP+RL ER+ +LP +D+FVTTADP  EPPIL  NT+LSLLAV+YPA++L
Sbjct: 70  SIKWSPASYKSYPERLDERVHDLPSVDMFVTTADPVREPPILVANTLLSLLAVNYPANKL 129

Query: 125 ACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCAS-SWE 183
           ACYVSDDGCSPL ++SL EASKFAK+WVPFCKKYNI+VRAPFRYFL     PP A+ S E
Sbjct: 130 ACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNIKVRAPFRYFL----NPPAATESSE 185

Query: 184 FQQDWEKMKEEYERLCGNIEAAANNSTSFDLTGELEVFFNTECQNHPTIIKVI 236
           F +DWE  K EYE+L   +E A  +S   D   + E F NT+  +H TI+KV+
Sbjct: 186 FSKDWEITKREYEKLSRRVEDATGDSHWLDAEDDFEDFSNTKPNDHSTIVKVV 238
Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -
>sp|O23386|CSLB6_ARATH Cellulose synthase-like protein B6 OS=Arabidopsis thaliana GN=CSLB6 PE=2 SV=2 Back     alignment and function description
>sp|O80899|CSLB2_ARATH Cellulose synthase-like protein B2 OS=Arabidopsis thaliana GN=CSLB2 PE=2 SV=1 Back     alignment and function description
>sp|O80891|CSLB4_ARATH Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=3 SV=1 Back     alignment and function description
>sp|O80898|CSLB1_ARATH Cellulose synthase-like protein B1 OS=Arabidopsis thaliana GN=CSLB1 PE=2 SV=2 Back     alignment and function description
>sp|Q0WT40|CSLB5_ARATH Cellulose synthase-like protein B5 OS=Arabidopsis thaliana GN=CSLB5 PE=2 SV=2 Back     alignment and function description
>sp|Q339N5|CSLH1_ORYSJ Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica GN=CSLH1 PE=2 SV=2 Back     alignment and function description
>sp|Q7PC71|CSLH2_ORYSI Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica GN=CSLH2 PE=2 SV=1 Back     alignment and function description
>sp|Q7XUT9|CSLH2_ORYSJ Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica GN=CSLH2 PE=2 SV=3 Back     alignment and function description
>sp|Q9SWW6|CESA7_ARATH Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Arabidopsis thaliana GN=CESA7 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query238
429326480 746 cellulose synthase-like protein [Populus 0.970 0.309 0.619 3e-81
224128982 746 hypothetical protein POPTRDRAFT_246659 [ 0.970 0.309 0.619 3e-81
297739182 1566 unnamed protein product [Vitis vinifera] 0.978 0.148 0.663 1e-79
224068967 749 predicted protein [Populus trichocarpa] 0.978 0.311 0.635 1e-78
255576879 749 transferase, putative [Ricinus communis] 0.978 0.311 0.634 1e-76
19310591 463 putative cellulose synthase [Arabidopsis 0.957 0.492 0.592 6e-74
30685335 755 cellulose synthase-like protein B3 [Arab 0.957 0.301 0.592 2e-73
359485490 757 PREDICTED: cellulose synthase-like prote 0.970 0.305 0.655 3e-72
297739178 765 unnamed protein product [Vitis vinifera] 0.970 0.301 0.651 8e-72
356543684 746 PREDICTED: cellulose synthase-like prote 0.957 0.305 0.599 1e-71
>gi|429326480|gb|AFZ78580.1| cellulose synthase-like protein [Populus tomentosa] Back     alignment and taxonomy information
 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 143/231 (61%), Positives = 177/231 (76%)

Query: 6   LYEKVIAKNTTHRFLDVTILFLLLSLLFYRLLSLKHNGFAWFVAFLCESCFTFVWVLITG 65
           L++KV+ K   HR  D+TI FLL+SLL YRLL L ++GFAW +A LCESCFTF+WV+   
Sbjct: 10  LFQKVVLKYPIHRAFDITIFFLLVSLLVYRLLYLSNHGFAWVLALLCESCFTFIWVVTVS 69

Query: 66  TKWTPISYNTYPQRLQERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLA 125
            KW P+ Y TYP+RL ++ ++LPP+D+FVT+ADP LEP ILTVNTV+SLLAVDYPA +LA
Sbjct: 70  CKWNPVEYKTYPERLSQKAQDLPPVDMFVTSADPVLEPSILTVNTVISLLAVDYPADKLA 129

Query: 126 CYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQ 185
           CYVSDDGCSP+ +YSLVEASKFAK+WVPFCKKYNI+ RAPFRYF  E       +S EFQ
Sbjct: 130 CYVSDDGCSPITYYSLVEASKFAKIWVPFCKKYNIQTRAPFRYFSSELILTGSCNSLEFQ 189

Query: 186 QDWEKMKEEYERLCGNIEAAANNSTSFDLTGELEVFFNTECQNHPTIIKVI 236
           Q++ KMK+EYE L   I+ A   S  +D  G+  +F N E +NHPTIIKVI
Sbjct: 190 QEYNKMKDEYEELASKIKDAVEKSMEWDQIGDFAIFSNIERKNHPTIIKVI 240

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224128982|ref|XP_002320471.1| hypothetical protein POPTRDRAFT_246659 [Populus trichocarpa] gi|222861244|gb|EEE98786.1| hypothetical protein POPTRDRAFT_246659 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297739182|emb|CBI28833.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224068967|ref|XP_002302868.1| predicted protein [Populus trichocarpa] gi|222844594|gb|EEE82141.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255576879|ref|XP_002529325.1| transferase, putative [Ricinus communis] gi|223531196|gb|EEF33042.1| transferase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|19310591|gb|AAL85026.1| putative cellulose synthase [Arabidopsis thaliana] gi|25054943|gb|AAN71948.1| putative cellulose synthase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30685335|ref|NP_850190.1| cellulose synthase-like protein B3 [Arabidopsis thaliana] gi|75158819|sp|Q8RX83.1|CSLB3_ARATH RecName: Full=Cellulose synthase-like protein B3; Short=AtCslB3 gi|19699079|gb|AAL90907.1| At2g32530/T26B15.9 [Arabidopsis thaliana] gi|25090435|gb|AAN72301.1| At2g32530/T26B15.9 [Arabidopsis thaliana] gi|330253603|gb|AEC08697.1| cellulose synthase-like protein B3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|359485490|ref|XP_002269976.2| PREDICTED: cellulose synthase-like protein H1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297739178|emb|CBI28829.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356543684|ref|XP_003540290.1| PREDICTED: cellulose synthase-like protein H1-like isoform 1 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query238
TAIR|locus:2060211 755 CSLB04 "AT2G32540" [Arabidopsi 0.962 0.303 0.556 7.2e-68
TAIR|locus:2060263 755 CSLB03 "AT2G32530" [Arabidopsi 0.970 0.305 0.561 8.2e-67
TAIR|locus:2060216 757 CSLB02 "AT2G32620" [Arabidopsi 0.957 0.301 0.557 2.2e-66
TAIR|locus:2129915 757 ATCSLB05 "AT4G15290" [Arabidop 0.970 0.305 0.502 3.2e-58
TAIR|locus:2060285 757 CSLB01 "AT2G32610" [Arabidopsi 0.966 0.303 0.495 4e-58
TAIR|locus:2172457 1049 CESA4 "cellulose synthase A4" 0.668 0.151 0.466 2.8e-35
TAIR|locus:2156789 1065 CEV1 "CONSTITUTIVE EXPRESSION 0.705 0.157 0.457 5.1e-34
TAIR|locus:2127776 1081 CESA1 "cellulose synthase 1" [ 0.668 0.147 0.466 3e-33
TAIR|locus:2178935 1026 IRX3 "IRREGULAR XYLEM 3" [Arab 0.798 0.185 0.41 1.2e-32
TAIR|locus:2012050 729 CSLE1 "AT1G55850" [Arabidopsis 0.642 0.209 0.450 2.3e-32
TAIR|locus:2060211 CSLB04 "AT2G32540" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 129/232 (55%), Positives = 159/232 (68%)

Query:     5 PLYEKVIAKNTTHRFLDVTIXXXXXXXXXXXXXXXKHNGFAWFVAFLCESCFTFVWVLIT 64
             PL E++  K+   R +D+TI                     W VAFLCE+CFTFVW+LIT
Sbjct:    10 PLCERISHKSYFLRAVDLTILGLLLSLLLYRILHVNQKDTVWIVAFLCETCFTFVWLLIT 69

Query:    65 GTKWTPISYNTYPQRLQERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRL 124
               KW+P  Y TYP+RL ER+ ELPP+D+FVTTADP  EPP++ VNTVLSLLAV+YPA++L
Sbjct:    70 NIKWSPADYKTYPERLDERVHELPPVDMFVTTADPVREPPLIVVNTVLSLLAVNYPANKL 129

Query:   125 ACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEF 184
             ACYVSDDGCSPL ++SL EASKFAK+WVPFCKKYN+RVRAPF YF R S  P  A   EF
Sbjct:   130 ACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNVRVRAPFMYF-RNS--PEAAEGSEF 186

Query:   185 QQDWEKMKEEYERLCGNIEAAANNSTSFDLTGELEVFFNTECQNHPTIIKVI 236
              +DWE  K EYE+L   +E A  +S   D   + E F NT+  +H TI+KV+
Sbjct:   187 SKDWEMTKREYEKLSQKVEDATGSSHWLDAEDDFEAFLNTKSNDHSTIVKVV 238
GO:0000271 "polysaccharide biosynthetic process" evidence=ISS
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0016020 "membrane" evidence=IEA
GO:0016740 "transferase activity" evidence=ISS
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS
GO:0016759 "cellulose synthase activity" evidence=ISS
GO:0016760 "cellulose synthase (UDP-forming) activity" evidence=IEA
GO:0030244 "cellulose biosynthetic process" evidence=IEA
TAIR|locus:2060263 CSLB03 "AT2G32530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2060216 CSLB02 "AT2G32620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129915 ATCSLB05 "AT4G15290" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2060285 CSLB01 "AT2G32610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172457 CESA4 "cellulose synthase A4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156789 CEV1 "CONSTITUTIVE EXPRESSION OF VSP 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127776 CESA1 "cellulose synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178935 IRX3 "IRREGULAR XYLEM 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012050 CSLE1 "AT1G55850" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query238
PLN02190 756 PLN02190, PLN02190, cellulose synthase-like protei 1e-106
PLN02915 1044 PLN02915, PLN02915, cellulose synthase A [UDP-form 2e-48
PLN02638 1079 PLN02638, PLN02638, cellulose synthase A (UDP-form 1e-47
PLN02436 1094 PLN02436, PLN02436, cellulose synthase A 9e-47
PLN02189 1040 PLN02189, PLN02189, cellulose synthase 1e-46
PLN02400 1085 PLN02400, PLN02400, cellulose synthase 2e-45
PLN02195 977 PLN02195, PLN02195, cellulose synthase A 5e-45
PLN02893 734 PLN02893, PLN02893, Cellulose synthase-like protei 4e-42
PLN02248 1135 PLN02248, PLN02248, cellulose synthase-like protei 3e-41
pfam03552 716 pfam03552, Cellulose_synt, Cellulose synthase 1e-37
TIGR03030 713 TIGR03030, CelA, cellulose synthase catalytic subu 1e-06
cd06421234 cd06421, CESA_CelA_like, CESA_CelA_like are involv 3e-06
PRK11498 852 PRK11498, bcsA, cellulose synthase catalytic subun 5e-04
>gnl|CDD|215122 PLN02190, PLN02190, cellulose synthase-like protein Back     alignment and domain information 
 Score =  324 bits (831), Expect = e-106
 Identities = 138/236 (58%), Positives = 170/236 (72%), Gaps = 5/236 (2%)

Query: 2   SSLPLYEKVIAKNTTHRFLDVTILFLLLSLLFYRLLSLKHNGFAWFVAFLCESCFTFVWV 61
           S  PL E++  K+   R +D+TIL LL SLL YR+L +  N   W VAFLCESCF+FVW+
Sbjct: 7   SLPPLCERISHKSYFLRAVDLTILGLLFSLLLYRILHMSENDTVWLVAFLCESCFSFVWL 66

Query: 62  LITGTKWTPISYNTYPQRLQERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPA 121
           LIT  KW+P  Y  YP RL ER+ +LP +D+FV TADP  EPPI+ VNTVLSLLAV+YPA
Sbjct: 67  LITCIKWSPAEYKPYPDRLDERVHDLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPA 126

Query: 122 HRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCAS- 180
           ++LACYVSDDGCSPL ++SL EASKFAK+WVPFCKKYN+RVRAPFRYFL     PP A+ 
Sbjct: 127 NKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNVRVRAPFRYFLN----PPVATE 182

Query: 181 SWEFQQDWEKMKEEYERLCGNIEAAANNSTSFDLTGELEVFFNTECQNHPTIIKVI 236
             EF +DWE  K EYE+L   +E A  +S   D   + E F NT+  +H TI+KV+
Sbjct: 183 DSEFSKDWEMTKREYEKLSRKVEDATGDSHWLDAEDDFEAFSNTKPNDHSTIVKVV 238

Length = 756
>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic subunit Back     alignment and domain information
>gnl|CDD|215343 PLN02638, PLN02638, cellulose synthase A (UDP-forming), catalytic subunit Back     alignment and domain information
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A Back     alignment and domain information
>gnl|CDD|215121 PLN02189, PLN02189, cellulose synthase Back     alignment and domain information
>gnl|CDD|215224 PLN02400, PLN02400, cellulose synthase Back     alignment and domain information
>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A Back     alignment and domain information
>gnl|CDD|215483 PLN02893, PLN02893, Cellulose synthase-like protein Back     alignment and domain information
>gnl|CDD|215138 PLN02248, PLN02248, cellulose synthase-like protein Back     alignment and domain information
>gnl|CDD|217611 pfam03552, Cellulose_synt, Cellulose synthase Back     alignment and domain information
>gnl|CDD|234095 TIGR03030, CelA, cellulose synthase catalytic subunit (UDP-forming) Back     alignment and domain information
>gnl|CDD|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose Back     alignment and domain information
>gnl|CDD|236918 PRK11498, bcsA, cellulose synthase catalytic subunit; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 238
PLN02195 977 cellulose synthase A 100.0
PLN02400 1085 cellulose synthase 100.0
PLN02915 1044 cellulose synthase A [UDP-forming], catalytic subu 100.0
PLN02190 756 cellulose synthase-like protein 100.0
PLN02638 1079 cellulose synthase A (UDP-forming), catalytic subu 100.0
PLN02436 1094 cellulose synthase A 100.0
PLN02189 1040 cellulose synthase 100.0
PLN02893 734 Cellulose synthase-like protein 100.0
PLN02248 1135 cellulose synthase-like protein 100.0
PF03552 720 Cellulose_synt: Cellulose synthase; InterPro: IPR0 100.0
PRK11498 852 bcsA cellulose synthase catalytic subunit; Provisi 99.85
TIGR03030 713 CelA cellulose synthase catalytic subunit (UDP-for 99.84
COG1215 439 Glycosyltransferases, probably involved in cell wa 98.85
PRK05454 691 glucosyltransferase MdoH; Provisional 98.84
TIGR03111 439 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0 98.59
PRK14583 444 hmsR N-glycosyltransferase; Provisional 98.26
PRK11204 420 N-glycosyltransferase; Provisional 98.03
TIGR03469 384 HonB hopene-associated glycosyltransferase HpnB. T 98.03
cd06421234 CESA_CelA_like CESA_CelA_like are involved in the 97.96
cd04191 254 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elon 97.86
TIGR03472 373 HpnI hopanoid biosynthesis associated glycosyl tra 97.84
cd04190244 Chitin_synth_C C-terminal domain of Chitin Synthas 97.73
cd06427241 CESA_like_2 CESA_like_2 is a member of the cellulo 97.7
cd06439251 CESA_like_1 CESA_like_1 is a member of the cellulo 97.54
PRK14716 504 bacteriophage N4 adsorption protein B; Provisional 97.51
cd06437232 CESA_CaSu_A2 Cellulose synthase catalytic subunit 97.48
PF13641228 Glyco_tranf_2_3: Glycosyltransferase like family 2 97.42
cd06438183 EpsO_like EpsO protein participates in the methano 97.4
PRK11234 727 nfrB bacteriophage N4 adsorption protein B; Provis 97.29
cd04192229 GT_2_like_e Subfamily of Glycosyltransferase Famil 97.23
cd06435236 CESA_NdvC_like NdvC_like proteins in this family a 97.21
cd04196214 GT_2_like_d Subfamily of Glycosyltransferase Famil 97.15
cd02520196 Glucosylceramide_synthase Glucosylceramide synthas 97.15
cd04184202 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot 96.96
cd06434235 GT2_HAS Hyaluronan synthases catalyze polymerizati 96.79
cd02525 249 Succinoglycan_BP_ExoA ExoA is involved in the bios 96.72
COG0463 291 WcaA Glycosyltransferases involved in cell wall bi 96.66
PF00535169 Glycos_transf_2: Glycosyl transferase family 2; In 96.45
PRK15489 703 nfrB bacteriophage N4 adsorption protein B; Provis 96.4
cd06423180 CESA_like CESA_like is the cellulose synthase supe 96.21
cd06433202 GT_2_WfgS_like WfgS and WfeV are involved in O-ant 96.2
PTZ00260 333 dolichyl-phosphate beta-glucosyltransferase; Provi 96.2
cd04186166 GT_2_like_c Subfamily of Glycosyltransferase Famil 96.13
PRK10018 279 putative glycosyl transferase; Provisional 95.81
cd02522221 GT_2_like_a GT_2_like_a represents a glycosyltrans 95.78
cd04185202 GT_2_like_b Subfamily of Glycosyltransferase Famil 95.75
PLN02726243 dolichyl-phosphate beta-D-mannosyltransferase 95.74
PRK10073 328 putative glycosyl transferase; Provisional 95.73
cd04195201 GT2_AmsE_like GT2_AmsE_like is involved in exopoly 95.67
cd06436191 GlcNAc-1-P_transferase N-acetyl-glucosamine transf 95.6
cd06420182 GT2_Chondriotin_Pol_N N-terminal domain of Chondro 95.46
cd06913219 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltran 95.42
cd04179185 DPM_DPG-synthase_like DPM_DPG-synthase_like is a m 95.24
cd02510 299 pp-GalNAc-T pp-GalNAc-T initiates the formation of 95.24
PRK10063248 putative glycosyl transferase; Provisional 94.58
PRK13915 306 putative glucosyl-3-phosphoglycerate synthase; Pro 94.29
cd06442224 DPM1_like DPM1_like represents putative enzymes si 94.03
COG2943 736 MdoH Membrane glycosyltransferase [Cell envelope b 93.92
cd00761156 Glyco_tranf_GTA_type Glycosyltransferase family A 93.73
cd04188211 DPG_synthase DPG_synthase is involved in protein N 93.6
cd04187181 DPM1_like_bac Bacterial DPM1_like enzymes are rela 93.32
PRK10714 325 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi 91.21
cd02511229 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 88.01
cd02514 334 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an es 87.13
cd02526237 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr 81.14
>PLN02195 cellulose synthase A Back     alignment and domain information 
Probab=100.00  E-value=1.2e-79  Score=620.92  Aligned_cols=236  Identities=37%  Similarity=0.648  Sum_probs=219.1

Q ss_pred             CCCceeeEecCCch---hHHHHHHHHHHHHHHHHHHhcCCCCChh-HHHHHHHHHHHHHHHHHHhhhhhcccccCCCCcc
Q 026442            3 SLPLYEKVIAKNTT---HRFLDVTILFLLLSLLFYRLLSLKHNGF-AWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQ   78 (238)
Q Consensus         3 ~~pL~~~~~~~~~~---~R~~~~~~~~~l~~yl~wR~~~tl~~~~-~wl~l~~aEl~~~~~wll~~~~~~~P~~R~~~~~   78 (238)
                      .+||++++++++++   ||+++++++++|+++++||+++..+.+. .|+++++||+||+|+|+|+|++||+|++|.+++|
T Consensus       157 ~~pL~~~~~i~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~d  236 (977)
T PLN02195        157 YEPLSRVIPIPRNKLTPYRAVIIMRLIILGLFFHYRITNPVDSAFGLWLTSVICEIWFAFSWVLDQFPKWSPINRETYID  236 (977)
T ss_pred             cCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHhcccccccccceECHH
Confidence            36999999999984   9999999999999999999999888774 8999999999999999999999999999999999


Q ss_pred             chhhcc------CCCCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhhHHHHHHHHHHHH
Q 026442           79 RLQERI------KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWV  152 (238)
Q Consensus        79 ~L~~~~------~~lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~al~eaa~Fa~~wv  152 (238)
                      ||++|-      ++||+|||||||+||.||||.+|+|||||+||+|||+|||+|||||||||++||+||.|||+||++||
T Consensus       237 rL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~Wv  316 (977)
T PLN02195        237 RLSARYEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETAEFARKWV  316 (977)
T ss_pred             HHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhc
Confidence            999872      46999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCcccCCccccccCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhccCCccCCC----CCccccCCCCCCC
Q 026442          153 PFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAANNSTSFDLT----GELEVFFNTECQN  228 (238)
Q Consensus       153 pFC~k~~v~~r~P~~YF~~~~~~~~~~~~~~f~~e~~~~k~~Ye~~k~rie~~~~~~~~~~~~----g~f~~w~~~~~~~  228 (238)
                      |||||||||||||++||+++.+..++...++|++||++||+||||||+|||+++++....+.+    ++|++|++++++|
T Consensus       317 PFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~k~RIe~~~~~~~~~~~~~~~m~d~t~W~g~~~~d  396 (977)
T PLN02195        317 PFCKKYSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNALVAKAQKTPEEGWTMQDGTPWPGNNTRD  396 (977)
T ss_pred             ccccccCCCcCCHHHHhccCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccccccCCccCCCCCCCC
Confidence            999999999999999999987755566678999999999999999999999998764443322    5589999999999


Q ss_pred             CcccceeccC
Q 026442          229 HPTIIKVITS  238 (238)
Q Consensus       229 H~~ivqvi~~  238 (238)
                      ||+|||||+.
T Consensus       397 Hp~IIqVll~  406 (977)
T PLN02195        397 HPGMIQVFLG  406 (977)
T ss_pred             Ccchhhhhcc
Confidence            9999999973

>PLN02400 cellulose synthase Back     alignment and domain information
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit Back     alignment and domain information
>PLN02190 cellulose synthase-like protein Back     alignment and domain information
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit Back     alignment and domain information
>PLN02436 cellulose synthase A Back     alignment and domain information
>PLN02189 cellulose synthase Back     alignment and domain information
>PLN02893 Cellulose synthase-like protein Back     alignment and domain information
>PLN02248 cellulose synthase-like protein Back     alignment and domain information
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals Back     alignment and domain information
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional Back     alignment and domain information
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming) Back     alignment and domain information
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK05454 glucosyltransferase MdoH; Provisional Back     alignment and domain information
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111 Back     alignment and domain information
>PRK14583 hmsR N-glycosyltransferase; Provisional Back     alignment and domain information
>PRK11204 N-glycosyltransferase; Provisional Back     alignment and domain information
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB Back     alignment and domain information
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose Back     alignment and domain information
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan Back     alignment and domain information
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI Back     alignment and domain information
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin Back     alignment and domain information
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily Back     alignment and domain information
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily Back     alignment and domain information
>PRK14716 bacteriophage N4 adsorption protein B; Provisional Back     alignment and domain information
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex Back     alignment and domain information
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A Back     alignment and domain information
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis Back     alignment and domain information
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional Back     alignment and domain information
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function Back     alignment and domain information
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase Back     alignment and domain information
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function Back     alignment and domain information
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis Back     alignment and domain information
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis Back     alignment and domain information
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan Back     alignment and domain information
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan Back     alignment and domain information
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional Back     alignment and domain information
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily Back     alignment and domain information
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis Back     alignment and domain information
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional Back     alignment and domain information
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function Back     alignment and domain information
>PRK10018 putative glycosyl transferase; Provisional Back     alignment and domain information
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function Back     alignment and domain information
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function Back     alignment and domain information
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase Back     alignment and domain information
>PRK10073 putative glycosyl transferase; Provisional Back     alignment and domain information
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis Back     alignment and domain information
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine Back     alignment and domain information
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase Back     alignment and domain information
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine Back     alignment and domain information
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily Back     alignment and domain information
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans Back     alignment and domain information
>PRK10063 putative glycosyl transferase; Provisional Back     alignment and domain information
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional Back     alignment and domain information
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1 Back     alignment and domain information
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold Back     alignment and domain information
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation Back     alignment and domain information
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1 Back     alignment and domain information
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional Back     alignment and domain information
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide Back     alignment and domain information
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides Back     alignment and domain information
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query238
4hg6_A 802 Cellulose synthase subunit A; membrane translocati 99.68
2z86_A 625 Chondroitin synthase; GT-A, glycosyltransferase A, 97.48
1xhb_A 472 Polypeptide N-acetylgalactosaminyltransferase 1; g 97.47
3bcv_A240 Putative glycosyltransferase protein; protein stru 97.32
1qg8_A 255 Protein (spore coat polysaccharide biosynthesis P 97.17
2d7i_A 570 Polypeptide N-acetylgalactosaminyltransferase 10; 97.13
2ffu_A 501 Ppgalnact-2, polypeptide N-acetylgalactosaminyltra 97.09
3ckj_A 329 Putative uncharacterized protein; mycobacteria, un 96.57
2z86_A 625 Chondroitin synthase; GT-A, glycosyltransferase A, 95.7
3f1y_A 387 Mannosyl-3-phosphoglycerate synthase; GT-A type gl 95.45
3l7i_A 729 Teichoic acid biosynthesis protein F; GT-B fold, m 94.57
1fo8_A 343 Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetyl 92.71
4fix_A 657 UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 92.24
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides} Back     alignment and structure
Probab=99.68  E-value=5e-16  Score=155.85  Aligned_cols=141  Identities=21%  Similarity=0.268  Sum_probs=113.3

Q ss_pred             chhHHHHHH-HHHHHHHHHHHHhcCCCCCh------hHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCccchhhccCCC
Q 026442           15 TTHRFLDVT-ILFLLLSLLFYRLLSLKHNG------FAWFVAFLCESCFTFVWVLITGTKWTPISYNTYPQRLQERIKEL   87 (238)
Q Consensus        15 ~~~R~~~~~-~~~~l~~yl~wR~~~tl~~~------~~wl~l~~aEl~~~~~wll~~~~~~~P~~R~~~~~~L~~~~~~l   87 (238)
                      ...|++.++ .+++.+.|++||++.|++..      +.|++++++|+++.+.|+++++..++|..|.+.++.   .++++
T Consensus        63 ~~~~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~~---~~~~~  139 (802)
T 4hg6_A           63 MVPRFLLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRPL---QPEEL  139 (802)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCCC---CTTTC
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhheecCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC---CccCC
Confidence            334544444 44455569999999999852      246889999999999999999999999999887753   25679


Q ss_pred             CCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhh-----HHHHHHHHHHHHHHHHHcCCc
Q 026442           88 PPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYS-----LVEASKFAKLWVPFCKKYNIR  161 (238)
Q Consensus        88 P~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~a-----l~eaa~Fa~~wvpFC~k~~v~  161 (238)
                      |.|+|+|||||   |+..++.+|+.|+++.|||.+++.|+|.|||.++-|.+.     ..+..+-......+|+++++.
T Consensus       140 P~VSViIPtyN---e~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~~~~v~  215 (802)
T 4hg6_A          140 PTVDILVPSYN---EPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRELGVV  215 (802)
T ss_dssp             CCEEEEEECTT---CCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred             CcEEEEEEECC---CCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHHhcCcE
Confidence            99999999999   999999999999999999999999999999999988642     222223333455788988876
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* Back     alignment and structure
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17 Back     alignment and structure
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis} Back     alignment and structure
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A* Back     alignment and structure
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A* Back     alignment and structure
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A* Back     alignment and structure
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A Back     alignment and structure
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* Back     alignment and structure
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A* Back     alignment and structure
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A* Back     alignment and structure
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A* Back     alignment and structure
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query238
d1xhba2 328 Polypeptide N-acetylgalactosaminyltransferase 1, N 97.66
d1qg8a_ 255 Spore coat polysaccharide biosynthesis protein Sps 97.2
d1omza_ 265 Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga 95.83
d2bo4a1 381 Mannosylglycerate synthase, MGS {Rhodothermus mari 80.54
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.66  E-value=2.4e-05  Score=66.36  Aligned_cols=54  Identities=15%  Similarity=0.064  Sum_probs=46.8

Q ss_pred             cCCCCCccEEEeCCCCCCCchhhHHHHHHHhhccCCCCCcceEEEcCCCCCchhhhh
Q 026442           84 IKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYS  140 (238)
Q Consensus        84 ~~~lP~VDVFI~T~np~~EP~~~v~~Tvls~la~DYP~~kl~vYv~DDG~s~~t~~a  140 (238)
                      ++++|.|.|.|||||   |....+.+||-|++.-.||....-|.|.|||.++-+...
T Consensus        18 ~~~~P~vSIIIp~yN---e~~~~l~~~l~Si~~qt~~~~~~EIIvVDdgS~d~~~~~   71 (328)
T d1xhba2          18 PDNLPTTSVVIVFHN---EAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKR   71 (328)
T ss_dssp             CSCCCCEEEEEEESS---CCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTH
T ss_pred             CCCCCCEEEEEeccC---CcHHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhhHHH
Confidence            467999999999999   988889999999999999855457999999999876644
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]} Back     information, alignment and structure