Citrus Sinensis ID: 026453


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
MEAKATVIGNSLVEPSILELANNLPLTTVPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHTLLSGDDSELEKLDHACKEWGFFQQKLDWGYGFTMFTLPTHLRKPHLFPKLPLPFRDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSLRMNYYPPCPQPEQVLGFKPHSDGSVLTILLQINEMDGLQIKKDGKWFAVKPLPDALIVNVGDVLEIFSNGTYRNIEHRAL
ccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHcccccEEccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccEEEEEEccccccccccccccccccccccEEEEEEccccccEEEEEccEEEEcccccccEEEEcccEEEEEEcccccccccccc
ccccHcccccccccHHHHHHHHHcccccccHHcEccccccccccccccccccccEEEHHHcccccHHHHHHHHHHHHHccccEEEccHHHHEEEEcccHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcEEEEEEEEEcccccccccccEEEEcccccEEEEEEccccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEc
MEAKATVIgnslvepsilelannlplttvppryvrpeidhplirnddssaqqlpvidmhtllsgddseLEKLDHACKEWGFFqqkldwgygftmftlpthlrkphlfpklplpfrdDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSlrmnyyppcpqpeqvlgfkphsdgsVLTILLQINEmdglqikkdgkwfavkplpdalivnVGDVLeifsngtyrniehral
MEAKATVIGNSLVEPSILELANNLPLTTVPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHTLLSGDDSELEKLDHACKEWGFFQQKLDWGYGFTMFTLPTHLRKPHLFPKLPLPFRDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSLRMNYYPPCPQPEQVLGFKPHSDGSVLTILLQINEMDGLQIKKDGKWFAVKPLPDALIVNVGDVLeifsngtyrniehral
MEAKATVIGNSLVEPSILELANNLPLTTVPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHTLLSGDDSELEKLDHACKEWGFFQQKLDWGYGFTMFTLPThlrkphlfpklplpfrDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSLRMNYYPPCPQPEQVLGFKPHSDGSVLTILLQINEMDGLQIKKDGKWFAVKPLPDALIVNVGDVLEIFSNGTYRNIEHRAL
*******IGNSLVEPSILELANNLPLTTVPPRYVRPEIDHPLI**********PVIDMHTLLSGD*SELEKLDHACKEWGFFQQKLDWGYGFTMFTLPTHLRKPHLFPKLPLPFRDDLEVYLTELKNLTLKILDLMAKALRMD******LFE*GMQSLRMNYYPPCPQPEQVLGFKPHSDGSVLTILLQINEMDGLQIKKDGKWFAVKPLPDALIVNVGDVLEIFSNGTYRN******
****************I***A******TVP*RYVRPEID**********AQQLPVIDMHTLLS***SELEKLDHACKEWGFFQQKLDWGYGFTMFTLPTHLRKPHLFPKLPLPFRDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSLRMNYYPPCPQPEQVLGFKPHSDGSVLTILLQINEMDGLQIKKDGKWFAVKPLPDALIVNVGDVLEIFSNGTYRNIEHRAL
MEAKATVIGNSLVEPSILELANNLPLTTVPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHTLLSGDDSELEKLDHACKEWGFFQQKLDWGYGFTMFTLPTHLRKPHLFPKLPLPFRDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSLRMNYYPPCPQPEQVLGFKPHSDGSVLTILLQINEMDGLQIKKDGKWFAVKPLPDALIVNVGDVLEIFSNGTYRNIEHRAL
**********SLVEPSILELANNLPLTTVPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHTLLSGDDSELEKLDHACKEWGFFQQKLDWGYGFTMFTLPTHLRKPHLFPKLPLPFRDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSLRMNYYPPCPQPEQVLGFKPHSDGSVLTILLQINEMDGLQIKKDGKWFAVKPLPDALIVNVGDVLEIFSNGTYRNIEHRAL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiii
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MEAKATVIGNSLVEPSILELANNLPLTTVPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHTLLSGDDSELEKLDHACKEWGFFQQKLDWGYGFTMFTLPTHLRKPHLFPKLPLPFRDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFENGMQSLRMNYYPPCPQPEQVLGFKPHSDGSVLTILLQINEMDGLQIKKDGKWFAVKPLPDALIVNVGDVLEIFSNGTYRNIEHRAL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query238 2.2.26 [Sep-21-2011]
Q39224358 Protein SRG1 OS=Arabidops yes no 1.0 0.664 0.457 5e-69
D4N502360 Codeine O-demethylase OS= N/A no 0.962 0.636 0.442 1e-60
D4N501364 Probable 2-oxoglutarate/F N/A no 0.987 0.645 0.412 2e-57
D4N500364 Thebaine 6-O-demethylase N/A no 0.991 0.648 0.414 4e-57
A2A1A0352 S-norcoclaurine synthase N/A no 0.970 0.656 0.325 2e-33
Q7XZQ6337 Flavonol synthase/flavano N/A no 0.869 0.614 0.291 8e-27
O49561338 Gibberellin 2-beta-dioxyg no no 0.781 0.550 0.310 2e-26
Q0WPW4307 1-aminocyclopropane-1-car no no 0.743 0.576 0.287 2e-25
Q7XZQ8365 Flavone synthase OS=Petro N/A no 0.726 0.473 0.324 4e-25
Q0JH50389 Gibberellin 20 oxidase 2 no no 0.491 0.300 0.423 6e-25
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function desciption
 Score =  260 bits (665), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 134/293 (45%), Positives = 178/293 (60%), Gaps = 55/293 (18%)

Query: 1   MEAKATVIGNSLVEPSILELANNLPLTTVPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHT 60
           MEAK     +S++ PS+ E+     +TTVPPRYVR + D   + +D     ++P+IDM  
Sbjct: 1   MEAKGAAQWSSILVPSVQEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKR 60

Query: 61  LLSGD--DSELEKLDHACKEWGFFQ----------------------------------- 83
           L S    DSE+EKLD ACKEWGFFQ                                   
Sbjct: 61  LCSSTTMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQR 120

Query: 84  ----------------QKLDWGYGFTMFTLPTHLRKPHLFPKLPLPFRDDLEVYLTELKN 127
                           QKLDW   F     P  LRKPHLFPKLPLPFRD LE+Y +E+++
Sbjct: 121 PDEIEGFGQAFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQS 180

Query: 128 LTLKILDLMAKALRMDPNDMKELFEN--GMQSLRMNYYPPCPQPEQVLGFKPHSDGSVLT 185
           +   ++  MA+AL + P ++++LF++   +QS+RMNYYPPCPQP+QV+G  PHSD   LT
Sbjct: 181 VAKILIAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLT 240

Query: 186 ILLQINEMDGLQIKKDGKWFAVKPLPDALIVNVGDVLEIFSNGTYRNIEHRAL 238
           +L+Q+N+++GLQIKKDGKW  VKPLP+A IVN+GDVLEI +NGTYR+IEHR +
Sbjct: 241 VLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGV 293





Arabidopsis thaliana (taxid: 3702)
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function description
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function description
>sp|D4N500|DIOX1_PAPSO Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1 Back     alignment and function description
>sp|A2A1A0|NCS1_COPJA S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1 Back     alignment and function description
>sp|Q7XZQ6|FLS_PETCR Flavonol synthase/flavanone 3-hydroxylase OS=Petroselinum crispum GN=FLS PE=1 SV=1 Back     alignment and function description
>sp|O49561|G2OX8_ARATH Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2 Back     alignment and function description
>sp|Q0WPW4|ACCO5_ARATH 1-aminocyclopropane-1-carboxylate oxidase 5 OS=Arabidopsis thaliana GN=At1g77330 PE=2 SV=1 Back     alignment and function description
>sp|Q7XZQ8|FNSI_PETCR Flavone synthase OS=Petroselinum crispum GN=FNSI PE=1 SV=1 Back     alignment and function description
>sp|Q0JH50|GAOX2_ORYSJ Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query238
225463356 354 PREDICTED: protein SRG1 [Vitis vinifera] 0.978 0.658 0.519 3e-76
225462507 366 PREDICTED: protein SRG1 [Vitis vinifera] 0.978 0.636 0.519 2e-75
225453297 364 PREDICTED: protein SRG1 [Vitis vinifera] 0.936 0.612 0.519 3e-75
224061385 355 predicted protein [Populus trichocarpa] 0.991 0.664 0.493 8e-73
449434270 358 PREDICTED: protein SRG1-like [Cucumis sa 0.924 0.614 0.514 3e-71
388503244 356 unknown [Lotus japonicus] 0.957 0.640 0.494 7e-71
359483589 361 PREDICTED: LOW QUALITY PROTEIN: protein 0.962 0.634 0.5 8e-71
388506568 356 unknown [Lotus japonicus] 0.957 0.640 0.494 1e-70
224061027 362 predicted protein [Populus trichocarpa] 0.970 0.638 0.493 3e-69
388499650308 unknown [Medicago truncatula] 0.978 0.756 0.5 7e-69
>gi|225463356|ref|XP_002271080.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 150/289 (51%), Positives = 182/289 (62%), Gaps = 56/289 (19%)

Query: 4   KATVIGNSLVEPSILELANNLPLTTVPPRYVRPEIDHPLIRNDDSSAQQL--PVIDMHTL 61
           K T +G SL  P + ELA    LTTVPPRY+RPE D P + +  ++   +  PVID + L
Sbjct: 5   KLTSLGGSLPVPCVQELAKKT-LTTVPPRYLRPEQDPPFLSDSSTTCSSIHAPVIDFNRL 63

Query: 62  LSGD--DSELEKLDHACKEWGFFQ------------------------------------ 83
           +SGD  DSEL+KL +ACKEWGFFQ                                    
Sbjct: 64  VSGDSMDSELDKLHYACKEWGFFQLTNHGVISTLVEKVKVEVQEFFNLPMEEKKKFWQQP 123

Query: 84  ---------------QKLDWGYGFTMFTLPTHLRKPHLFPKLPLPFRDDLEVYLTELKNL 128
                          QKLDW   F M TLPT+LRKPHLFPKLP+  RD LE+Y  EL+NL
Sbjct: 124 EDLQGFGQAFVVSEEQKLDWADMFYMITLPTYLRKPHLFPKLPISLRDSLEIYAVELRNL 183

Query: 129 TLKILDLMAKALRMDPNDMKELFENGMQSLRMNYYPPCPQPEQVLGFKPHSDGSVLTILL 188
            + IL  +AKAL+M+ NDMKELFE G Q++RMNYYPPCPQP+QV+G  PHSD   LTILL
Sbjct: 184 AMTILGFIAKALKMEANDMKELFEEGHQAMRMNYYPPCPQPDQVIGLTPHSDAVGLTILL 243

Query: 189 QINEMDGLQIKKDGKWFAVKPLPDALIVNVGDVLEIFSNGTYRNIEHRA 237
           Q+NEM+GLQI+KDG W  +KPLP A IVN+GD+LEI +NG YR+IEHRA
Sbjct: 244 QVNEMEGLQIRKDGMWVPIKPLPGAFIVNIGDILEIVTNGAYRSIEHRA 292




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462507|ref|XP_002269087.1| PREDICTED: protein SRG1 [Vitis vinifera] gi|297740615|emb|CBI30797.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225453297|ref|XP_002268288.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224061385|ref|XP_002300453.1| predicted protein [Populus trichocarpa] gi|222847711|gb|EEE85258.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449434270|ref|XP_004134919.1| PREDICTED: protein SRG1-like [Cucumis sativus] gi|449479526|ref|XP_004155625.1| PREDICTED: protein SRG1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|388503244|gb|AFK39688.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|359483589|ref|XP_003632983.1| PREDICTED: LOW QUALITY PROTEIN: protein SRG1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|388506568|gb|AFK41350.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|224061027|ref|XP_002300322.1| predicted protein [Populus trichocarpa] gi|222847580|gb|EEE85127.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388499650|gb|AFK37891.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query238
TAIR|locus:2020422361 AT1G17010 [Arabidopsis thalian 0.651 0.429 0.544 4.8e-58
TAIR|locus:2020407358 SRG1 "senescence-related gene 0.651 0.432 0.496 6.1e-58
TAIR|locus:2202980356 AT1G78550 [Arabidopsis thalian 0.651 0.435 0.496 2e-57
TAIR|locus:2122679353 AT4G25310 [Arabidopsis thalian 0.655 0.441 0.496 7.8e-56
TAIR|locus:2122669356 AT4G25300 [Arabidopsis thalian 0.655 0.438 0.477 2.6e-55
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.651 0.425 0.429 3.6e-40
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.642 0.412 0.380 1.9e-35
TAIR|locus:2042942353 AT2G38240 [Arabidopsis thalian 0.647 0.436 0.350 2.1e-34
TAIR|locus:2153924341 DMR6 "DOWNY MILDEW RESISTANT 6 0.495 0.346 0.440 1.9e-33
TAIR|locus:2127691349 AT4G10500 [Arabidopsis thalian 0.491 0.335 0.389 7.9e-33
TAIR|locus:2020422 AT1G17010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 426 (155.0 bits), Expect = 4.8e-58, Sum P(2) = 4.8e-58
 Identities = 85/156 (54%), Positives = 108/156 (69%)

Query:    84 QKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMD 143
             QKLDW   F +   P                 D L++Y T +K++   +L  MAKAL++ 
Sbjct:   138 QKLDWADLFFLIMQPVQLRKRHLFPKLPLPFRDTLDMYSTRVKSIAKILLAKMAKALQIK 197

Query:   144 PNDMKELF-ENGMQSLRMNYYPPCPQPEQVLGFKPHSDGSVLTILLQINEMDGLQIKKDG 202
             P +++E+F ++ MQS+RMNYYPPCPQP  V G  PHSD   LTILLQ+NE+DGLQIKK+G
Sbjct:   198 PEEVEEIFGDDMMQSMRMNYYPPCPQPNLVTGLIPHSDAVGLTILLQVNEVDGLQIKKNG 257

Query:   203 KWFAVKPLPDALIVNVGDVLEIFSNGTYRNIEHRAL 238
             KWF VKPL +A IVNVGDVLEI +NGTYR+IEHRA+
Sbjct:   258 KWFFVKPLQNAFIVNVGDVLEIITNGTYRSIEHRAM 293


GO:0005506 "iron ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0009813 "flavonoid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009686 "gibberellin biosynthetic process" evidence=RCA
GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA
TAIR|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202980 AT1G78550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122679 AT4G25310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122669 AT4G25300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153924 DMR6 "DOWNY MILDEW RESISTANT 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127691 AT4G10500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query238
PLN02216357 PLN02216, PLN02216, protein SRG1 1e-101
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 1e-63
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 3e-54
PLN02947374 PLN02947, PLN02947, oxidoreductase 1e-43
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 6e-41
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 3e-36
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 3e-36
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 5e-35
PLN02704335 PLN02704, PLN02704, flavonol synthase 5e-35
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 2e-34
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 5e-34
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 6e-32
PLN02904357 PLN02904, PLN02904, oxidoreductase 2e-30
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 3e-28
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 1e-27
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 2e-27
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 3e-27
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 7e-27
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 2e-25
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 1e-23
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 1e-22
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 4e-20
PLN02997325 PLN02997, PLN02997, flavonol synthase 3e-18
PLN02485329 PLN02485, PLN02485, oxidoreductase 4e-17
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 4e-13
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 4e-11
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 5e-08
PLN02912 348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 3e-07
PLN02639 337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 2e-04
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
 Score =  298 bits (764), Expect = e-101
 Identities = 140/292 (47%), Positives = 177/292 (60%), Gaps = 54/292 (18%)

Query: 1   MEAKATVIGNSLVEPSILELANNLPLTTVPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHT 60
           MEAK     +S++ PS+ E+     +TTVPPRYVR + D   I  D   + ++P+IDM  
Sbjct: 1   MEAKGATQWSSIIVPSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKR 60

Query: 61  LLSGD--DSELEKLDHACKEWGFFQ----------------------------------- 83
           L S    DSE+EKLD ACKEWGFFQ                                   
Sbjct: 61  LCSSTAMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQR 120

Query: 84  ----------------QKLDWGYGFTMFTLPTHLRKPHLFPKLPLPFRDDLEVYLTELKN 127
                           QKLDW   F +   P  LRKPHLFPKLPLPFRD LE Y  E+K+
Sbjct: 121 PGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLETYSAEVKS 180

Query: 128 LTLKILDLMAKALRMDPNDMKELFENGM-QSLRMNYYPPCPQPEQVLGFKPHSDGSVLTI 186
           +   +   MA AL + P +M++LF++ + QS+RMNYYPPCPQP+QV+G  PHSD   LTI
Sbjct: 181 IAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTI 240

Query: 187 LLQINEMDGLQIKKDGKWFAVKPLPDALIVNVGDVLEIFSNGTYRNIEHRAL 238
           LLQ+NE++GLQIKKDGKW +VKPLP+AL+VNVGD+LEI +NGTYR+IEHR +
Sbjct: 241 LLQVNEVEGLQIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGV 292


Length = 357

>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 238
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947374 oxidoreductase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02904357 oxidoreductase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02704335 flavonol synthase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02997325 flavonol synthase 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02485329 oxidoreductase 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.85
PLN03176120 flavanone-3-hydroxylase; Provisional 98.94
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 98.86
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 93.43
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 91.73
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 89.18
>PLN02216 protein SRG1 Back     alignment and domain information
Probab=100.00  E-value=1.5e-62  Score=442.63  Aligned_cols=238  Identities=58%  Similarity=1.010  Sum_probs=204.7

Q ss_pred             CcccccccCCCCccccHHHHHhcCCCCCCCCCccCCCCCCCCCCCCCCCCCCCceeeCCCCCCCCH--HHHHHHHHHHHH
Q 026453            1 MEAKATVIGNSLVEPSILELANNLPLTTVPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHTLLSGDD--SELEKLDHACKE   78 (238)
Q Consensus         1 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~vP~~y~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~--~~~~~l~~A~~~   78 (238)
                      |+.++.+-..++.++.||+++.+.++++||++|++|.++++.+........+||+|||+.+.+++.  +++++|++||++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~p~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~   80 (357)
T PLN02216          1 MEAKGATQWSSIIVPSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTAMDSEVEKLDFACKE   80 (357)
T ss_pred             CCccccCcCCCccchhHHHHHhcCCCCCCCHhhCcCcccCCccccccCcCCCCCeEEChhccCCccHHHHHHHHHHHHHH
Confidence            555544433355678899998754688999999999999874321111124799999999876553  477999999999


Q ss_pred             cccce---------------------------------------------------eecccccccccccCCCCCCCCCCC
Q 026453           79 WGFFQ---------------------------------------------------QKLDWGYGFTMFTLPTHLRKPHLF  107 (238)
Q Consensus        79 ~GfF~---------------------------------------------------~~~dw~e~~~~~~~p~~~~~~~~w  107 (238)
                      |||||                                                   ++.||+|.|++...|.....++.|
T Consensus        81 ~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~W  160 (357)
T PLN02216         81 WGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLF  160 (357)
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeeccCcccccchhc
Confidence            99999                                                   235899998877666655678899


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHhc-cceeeEeeeeCCCCCCcCcccccccccCCcceE
Q 026453          108 PKLPLPFRDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFEN-GMQSLRMNYYPPCPQPEQVLGFKPHSDGSVLTI  186 (238)
Q Consensus       108 P~~~~~fr~~~~~y~~~~~~l~~~ll~~ls~~Lgl~~~~~~~~~~~-~~~~lr~~~YPp~p~p~~~~g~~~HtD~~~lTl  186 (238)
                      |+.|+.||+++++|+++|++|+.+|+++|+++|||++++|.+.+.. ..+.||+|||||||+++.++|+++|||+|+|||
T Consensus       161 P~~p~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTl  240 (357)
T PLN02216        161 PKLPLPFRDTLETYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTI  240 (357)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEE
Confidence            9999999999999999999999999999999999999999998875 356899999999999999999999999999999


Q ss_pred             EeecCCCCCeeeeeCCeeEEecCCCCcEEEEhhHHHHHHhCCcccCcccccC
Q 026453          187 LLQINEMDGLQIKKDGKWFAVKPLPDALIVNVGDVLEIFSNGTYRNIEHRAL  238 (238)
Q Consensus       187 L~q~~~v~GLqv~~~g~W~~V~p~p~~~vVnvGd~le~~SnG~~kS~~HRVv  238 (238)
                      |+|+++++||||+++|+|+.|+|+||++|||+||+||+||||+|||++|||+
T Consensus       241 L~q~~~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~HRVv  292 (357)
T PLN02216        241 LLQVNEVEGLQIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGV  292 (357)
T ss_pred             EEecCCCCceeEEECCEEEECCCCCCeEEEEcchhhHhhcCCeeeccCceee
Confidence            9996679999999999999999999999999999999999999999999995



>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query238
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 4e-21
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 4e-21
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 6e-21
1w9y_A319 The Structure Of Acc Oxidase Length = 319 9e-19
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 2e-11
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 3e-06
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure

Iteration: 1

Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 49/121 (40%), Positives = 77/121 (63%), Gaps = 4/121 (3%) Query: 121 YLTELKNLTLKILDLMAKALRMDPNDM-KEL--FENGMQSLRMNYYPPCPQPEQVLGFKP 177 Y L+ L K+ ++ L ++P+ + KE+ E + +++NYYP CPQPE LG + Sbjct: 171 YAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEA 230 Query: 178 HSDGSVLTILLQINEMDGLQIKKDGKWFAVKPLPDALIVNVGDVLEIFSNGTYRNIEHRA 237 H+D S LT +L N + GLQ+ +GKW K +PD++++++GD LEI SNG Y++I HR Sbjct: 231 HTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRG 289 Query: 238 L 238 L Sbjct: 290 L 290
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query238
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 5e-93
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 3e-85
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 2e-52
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 3e-45
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 2e-41
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 8e-38
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  276 bits (707), Expect = 5e-93
 Identities = 73/289 (25%), Positives = 124/289 (42%), Gaps = 67/289 (23%)

Query: 15  PSILELANNLPLTTVPPRYVRPEIDHPLIRN-----DDSSAQQLPVIDMHTLLSGDDS-- 67
             +  LA +  + ++P  Y+RP+ +   I +           Q+P ID+  + S D+   
Sbjct: 5   ERVESLAKS-GIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIR 63

Query: 68  --ELEKLDHACKEWGFFQ------------------------------------------ 83
              +E+L  A  +WG                                             
Sbjct: 64  ENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQ 123

Query: 84  -----------QKLDWGYGFTMFTLPTHLRKPHLFPKLPLPFRDDLEVYLTELKNLTLKI 132
                       +L+W   F     P   R   ++PK P  + +    Y   L+ L  K+
Sbjct: 124 GYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKV 183

Query: 133 LDLMAKALRMDPNDMKELF---ENGMQSLRMNYYPPCPQPEQVLGFKPHSDGSVLTILLQ 189
              ++  L ++P+ +++     E  +  +++NYYP CPQPE  LG + H+D S LT +L 
Sbjct: 184 FKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH 243

Query: 190 INEMDGLQIKKDGKWFAVKPLPDALIVNVGDVLEIFSNGTYRNIEHRAL 238
            N + GLQ+  +GKW   K +PD++++++GD LEI SNG Y++I HR L
Sbjct: 244 -NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGL 291


>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query238
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 91.97
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=4.3e-61  Score=432.37  Aligned_cols=224  Identities=32%  Similarity=0.662  Sum_probs=197.7

Q ss_pred             ccccHHHHHhcCCCCCCCCCccCCCCCCCCCCCC--CC---CCCCCceeeCCCCCCCCHH----HHHHHHHHHHHcccce
Q 026453           13 VEPSILELANNLPLTTVPPRYVRPEIDHPLIRND--DS---SAQQLPVIDMHTLLSGDDS----ELEKLDHACKEWGFFQ   83 (238)
Q Consensus        13 ~~~~v~~l~~~~~~~~vP~~y~~~~~~~~~~~~~--~~---~~~~iPvIDls~l~~~~~~----~~~~l~~A~~~~GfF~   83 (238)
                      ++++||+|+++ ++++||++|++|.++++.+...  ..   ...+||||||+.|.+++++    .+++|.+||++|||||
T Consensus         3 ~~~~v~~l~~~-~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~   81 (356)
T 1gp6_A            3 AVERVESLAKS-GIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMH   81 (356)
T ss_dssp             CCCCHHHHHHT-TCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEE
T ss_pred             CcccHHHHHhc-CCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEE
Confidence            46789999998 8999999999998877653210  00   0136999999999766643    5689999999999999


Q ss_pred             -----------------------------------------------------eecccccccccccCCCCCCCCCCCCCC
Q 026453           84 -----------------------------------------------------QKLDWGYGFTMFTLPTHLRKPHLFPKL  110 (238)
Q Consensus        84 -----------------------------------------------------~~~dw~e~~~~~~~p~~~~~~~~wP~~  110 (238)
                                                                           ++.||+|+|.+...|......+.||+.
T Consensus        82 v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~  161 (356)
T 1gp6_A           82 LINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKT  161 (356)
T ss_dssp             EESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCS
T ss_pred             EeCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCCc
Confidence                                                                 134788888887666544567899999


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHh---ccceeeEeeeeCCCCCCcCcccccccccCCcceEE
Q 026453          111 PLPFRDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFE---NGMQSLRMNYYPPCPQPEQVLGFKPHSDGSVLTIL  187 (238)
Q Consensus       111 ~~~fr~~~~~y~~~~~~l~~~ll~~ls~~Lgl~~~~~~~~~~---~~~~~lr~~~YPp~p~p~~~~g~~~HtD~~~lTlL  187 (238)
                      ++.||+++++|+++|.+++.+|+++|+++|||++++|.+.+.   ...+.||+|||||||+|+.++|+++|||+|+||||
T Consensus       162 ~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL  241 (356)
T 1gp6_A          162 PSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFI  241 (356)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEE
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEEE
Confidence            999999999999999999999999999999999999999987   46778999999999999999999999999999999


Q ss_pred             eecCCCCCeeeeeCCeeEEecCCCCcEEEEhhHHHHHHhCCcccCcccccC
Q 026453          188 LQINEMDGLQIKKDGKWFAVKPLPDALIVNVGDVLEIFSNGTYRNIEHRAL  238 (238)
Q Consensus       188 ~q~~~v~GLqv~~~g~W~~V~p~p~~~vVnvGd~le~~SnG~~kS~~HRVv  238 (238)
                      +| ++++||||+++|+|++|+|+||+||||+||+||+||||+|||++|||+
T Consensus       242 ~q-d~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv  291 (356)
T 1gp6_A          242 LH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGL  291 (356)
T ss_dssp             EE-CSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEEC
T ss_pred             EE-cCCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceec
Confidence            99 789999999999999999999999999999999999999999999996



>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 238
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 1e-33
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 2e-25
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 3e-24
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 1e-11
d1odma_ 329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 2e-06
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
 Score =  122 bits (306), Expect = 1e-33
 Identities = 72/289 (24%), Positives = 124/289 (42%), Gaps = 67/289 (23%)

Query: 15  PSILELANNLPLTTVPPRYVRPEIDHPLIRNDDSSAQ-----QLPVIDMHTLLSGDDSE- 68
             +  LA +  + ++P  Y+RP+ +   I +     +     Q+P ID+  + S D+   
Sbjct: 4   ERVESLAKS-GIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIR 62

Query: 69  ---LEKLDHACKEWGFFQ------------------------------------------ 83
              +E+L  A  +WG                                             
Sbjct: 63  ENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQ 122

Query: 84  -----------QKLDWGYGFTMFTLPTHLRKPHLFPKLPLPFRDDLEVYLTELKNLTLKI 132
                       +L+W   F     P   R   ++PK P  + +    Y   L+ L  K+
Sbjct: 123 GYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKV 182

Query: 133 LDLMAKALRMDPNDMKELF---ENGMQSLRMNYYPPCPQPEQVLGFKPHSDGSVLTILLQ 189
              ++  L ++P+ +++     E  +  +++NYYP CPQPE  LG + H+D S LT  + 
Sbjct: 183 FKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT-FIL 241

Query: 190 INEMDGLQIKKDGKWFAVKPLPDALIVNVGDVLEIFSNGTYRNIEHRAL 238
            N + GLQ+  +GKW   K +PD++++++GD LEI SNG Y++I HR L
Sbjct: 242 HNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGL 290


>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query238
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 82.48
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00  E-value=1.9e-57  Score=404.06  Aligned_cols=224  Identities=32%  Similarity=0.664  Sum_probs=191.9

Q ss_pred             ccccHHHHHhcCCCCCCCCCccCCCCCCCCCCC-----CCCCCCCCceeeCCCCCCCCHH----HHHHHHHHHHHcccce
Q 026453           13 VEPSILELANNLPLTTVPPRYVRPEIDHPLIRN-----DDSSAQQLPVIDMHTLLSGDDS----ELEKLDHACKEWGFFQ   83 (238)
Q Consensus        13 ~~~~v~~l~~~~~~~~vP~~y~~~~~~~~~~~~-----~~~~~~~iPvIDls~l~~~~~~----~~~~l~~A~~~~GfF~   83 (238)
                      .+..||+|+++ |+++||++|++|+++++.+..     ....+.+||||||+.|.+++++    .+++|++||++|||||
T Consensus         2 ~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~   80 (349)
T d1gp6a_           2 AVERVESLAKS-GIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMH   80 (349)
T ss_dssp             CCCCHHHHHHT-TCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEE
T ss_pred             CCcchHHHHhC-CCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEE
Confidence            46789999999 999999999999999876532     1223468999999999888763    4589999999999999


Q ss_pred             -----------------------------------------------------eecccccccccccCCCCCCCCCCCCCC
Q 026453           84 -----------------------------------------------------QKLDWGYGFTMFTLPTHLRKPHLFPKL  110 (238)
Q Consensus        84 -----------------------------------------------------~~~dw~e~~~~~~~p~~~~~~~~wP~~  110 (238)
                                                                           ...+|.+.++....+......+.||+.
T Consensus        81 l~nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~  160 (349)
T d1gp6a_          81 LINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKT  160 (349)
T ss_dssp             EESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCS
T ss_pred             EEccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcccccccccccccccccc
Confidence                                                                 112222222222223333456899999


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHh---ccceeeEeeeeCCCCCCcCcccccccccCCcceEE
Q 026453          111 PLPFRDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFE---NGMQSLRMNYYPPCPQPEQVLGFKPHSDGSVLTIL  187 (238)
Q Consensus       111 ~~~fr~~~~~y~~~~~~l~~~ll~~ls~~Lgl~~~~~~~~~~---~~~~~lr~~~YPp~p~p~~~~g~~~HtD~~~lTlL  187 (238)
                      ++.|++.+++|+++|.+++.+|+++++++||+++++|.+.+.   ...+.||+||||||+.+...+|+++|||+|+||||
T Consensus       161 ~~~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL  240 (349)
T d1gp6a_         161 PSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFI  240 (349)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEE
T ss_pred             cchHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEEE
Confidence            999999999999999999999999999999999999998874   33568999999999999999999999999999999


Q ss_pred             eecCCCCCeeeeeCCeeEEecCCCCcEEEEhhHHHHHHhCCcccCcccccC
Q 026453          188 LQINEMDGLQIKKDGKWFAVKPLPDALIVNVGDVLEIFSNGTYRNIEHRAL  238 (238)
Q Consensus       188 ~q~~~v~GLqv~~~g~W~~V~p~p~~~vVnvGd~le~~SnG~~kS~~HRVv  238 (238)
                      +| ++++||||+++|+|+.|+|.+|++|||+||+||+||||+|||++|||+
T Consensus       241 ~q-~~~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv  290 (349)
T d1gp6a_         241 LH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGL  290 (349)
T ss_dssp             EE-CSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEEC
T ss_pred             ec-cCCcceeeecCCceEEccCCCCCeeeeHHhHHHHHhCCCccCcCcccc
Confidence            99 899999999999999999999999999999999999999999999996



>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure