Citrus Sinensis ID: 026453
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 238 | ||||||
| 225463356 | 354 | PREDICTED: protein SRG1 [Vitis vinifera] | 0.978 | 0.658 | 0.519 | 3e-76 | |
| 225462507 | 366 | PREDICTED: protein SRG1 [Vitis vinifera] | 0.978 | 0.636 | 0.519 | 2e-75 | |
| 225453297 | 364 | PREDICTED: protein SRG1 [Vitis vinifera] | 0.936 | 0.612 | 0.519 | 3e-75 | |
| 224061385 | 355 | predicted protein [Populus trichocarpa] | 0.991 | 0.664 | 0.493 | 8e-73 | |
| 449434270 | 358 | PREDICTED: protein SRG1-like [Cucumis sa | 0.924 | 0.614 | 0.514 | 3e-71 | |
| 388503244 | 356 | unknown [Lotus japonicus] | 0.957 | 0.640 | 0.494 | 7e-71 | |
| 359483589 | 361 | PREDICTED: LOW QUALITY PROTEIN: protein | 0.962 | 0.634 | 0.5 | 8e-71 | |
| 388506568 | 356 | unknown [Lotus japonicus] | 0.957 | 0.640 | 0.494 | 1e-70 | |
| 224061027 | 362 | predicted protein [Populus trichocarpa] | 0.970 | 0.638 | 0.493 | 3e-69 | |
| 388499650 | 308 | unknown [Medicago truncatula] | 0.978 | 0.756 | 0.5 | 7e-69 |
| >gi|225463356|ref|XP_002271080.1| PREDICTED: protein SRG1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 150/289 (51%), Positives = 182/289 (62%), Gaps = 56/289 (19%)
Query: 4 KATVIGNSLVEPSILELANNLPLTTVPPRYVRPEIDHPLIRNDDSSAQQL--PVIDMHTL 61
K T +G SL P + ELA LTTVPPRY+RPE D P + + ++ + PVID + L
Sbjct: 5 KLTSLGGSLPVPCVQELAKKT-LTTVPPRYLRPEQDPPFLSDSSTTCSSIHAPVIDFNRL 63
Query: 62 LSGD--DSELEKLDHACKEWGFFQ------------------------------------ 83
+SGD DSEL+KL +ACKEWGFFQ
Sbjct: 64 VSGDSMDSELDKLHYACKEWGFFQLTNHGVISTLVEKVKVEVQEFFNLPMEEKKKFWQQP 123
Query: 84 ---------------QKLDWGYGFTMFTLPTHLRKPHLFPKLPLPFRDDLEVYLTELKNL 128
QKLDW F M TLPT+LRKPHLFPKLP+ RD LE+Y EL+NL
Sbjct: 124 EDLQGFGQAFVVSEEQKLDWADMFYMITLPTYLRKPHLFPKLPISLRDSLEIYAVELRNL 183
Query: 129 TLKILDLMAKALRMDPNDMKELFENGMQSLRMNYYPPCPQPEQVLGFKPHSDGSVLTILL 188
+ IL +AKAL+M+ NDMKELFE G Q++RMNYYPPCPQP+QV+G PHSD LTILL
Sbjct: 184 AMTILGFIAKALKMEANDMKELFEEGHQAMRMNYYPPCPQPDQVIGLTPHSDAVGLTILL 243
Query: 189 QINEMDGLQIKKDGKWFAVKPLPDALIVNVGDVLEIFSNGTYRNIEHRA 237
Q+NEM+GLQI+KDG W +KPLP A IVN+GD+LEI +NG YR+IEHRA
Sbjct: 244 QVNEMEGLQIRKDGMWVPIKPLPGAFIVNIGDILEIVTNGAYRSIEHRA 292
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225462507|ref|XP_002269087.1| PREDICTED: protein SRG1 [Vitis vinifera] gi|297740615|emb|CBI30797.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|225453297|ref|XP_002268288.1| PREDICTED: protein SRG1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224061385|ref|XP_002300453.1| predicted protein [Populus trichocarpa] gi|222847711|gb|EEE85258.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|449434270|ref|XP_004134919.1| PREDICTED: protein SRG1-like [Cucumis sativus] gi|449479526|ref|XP_004155625.1| PREDICTED: protein SRG1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|388503244|gb|AFK39688.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
| >gi|359483589|ref|XP_003632983.1| PREDICTED: LOW QUALITY PROTEIN: protein SRG1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|388506568|gb|AFK41350.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
| >gi|224061027|ref|XP_002300322.1| predicted protein [Populus trichocarpa] gi|222847580|gb|EEE85127.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|388499650|gb|AFK37891.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 238 | ||||||
| TAIR|locus:2020422 | 361 | AT1G17010 [Arabidopsis thalian | 0.651 | 0.429 | 0.544 | 4.8e-58 | |
| TAIR|locus:2020407 | 358 | SRG1 "senescence-related gene | 0.651 | 0.432 | 0.496 | 6.1e-58 | |
| TAIR|locus:2202980 | 356 | AT1G78550 [Arabidopsis thalian | 0.651 | 0.435 | 0.496 | 2e-57 | |
| TAIR|locus:2122679 | 353 | AT4G25310 [Arabidopsis thalian | 0.655 | 0.441 | 0.496 | 7.8e-56 | |
| TAIR|locus:2122669 | 356 | AT4G25300 [Arabidopsis thalian | 0.655 | 0.438 | 0.477 | 2.6e-55 | |
| TAIR|locus:2089428 | 364 | LBO1 "LATERAL BRANCHING OXIDOR | 0.651 | 0.425 | 0.429 | 3.6e-40 | |
| TAIR|locus:2169697 | 371 | AT5G05600 [Arabidopsis thalian | 0.642 | 0.412 | 0.380 | 1.9e-35 | |
| TAIR|locus:2042942 | 353 | AT2G38240 [Arabidopsis thalian | 0.647 | 0.436 | 0.350 | 2.1e-34 | |
| TAIR|locus:2153924 | 341 | DMR6 "DOWNY MILDEW RESISTANT 6 | 0.495 | 0.346 | 0.440 | 1.9e-33 | |
| TAIR|locus:2127691 | 349 | AT4G10500 [Arabidopsis thalian | 0.491 | 0.335 | 0.389 | 7.9e-33 |
| TAIR|locus:2020422 AT1G17010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 426 (155.0 bits), Expect = 4.8e-58, Sum P(2) = 4.8e-58
Identities = 85/156 (54%), Positives = 108/156 (69%)
Query: 84 QKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMD 143
QKLDW F + P D L++Y T +K++ +L MAKAL++
Sbjct: 138 QKLDWADLFFLIMQPVQLRKRHLFPKLPLPFRDTLDMYSTRVKSIAKILLAKMAKALQIK 197
Query: 144 PNDMKELF-ENGMQSLRMNYYPPCPQPEQVLGFKPHSDGSVLTILLQINEMDGLQIKKDG 202
P +++E+F ++ MQS+RMNYYPPCPQP V G PHSD LTILLQ+NE+DGLQIKK+G
Sbjct: 198 PEEVEEIFGDDMMQSMRMNYYPPCPQPNLVTGLIPHSDAVGLTILLQVNEVDGLQIKKNG 257
Query: 203 KWFAVKPLPDALIVNVGDVLEIFSNGTYRNIEHRAL 238
KWF VKPL +A IVNVGDVLEI +NGTYR+IEHRA+
Sbjct: 258 KWFFVKPLQNAFIVNVGDVLEIITNGTYRSIEHRAM 293
|
|
| TAIR|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2202980 AT1G78550 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2122679 AT4G25310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2122669 AT4G25300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2153924 DMR6 "DOWNY MILDEW RESISTANT 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2127691 AT4G10500 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 238 | |||
| PLN02216 | 357 | PLN02216, PLN02216, protein SRG1 | 1e-101 | |
| PLN02758 | 361 | PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy | 1e-63 | |
| PLN02393 | 362 | PLN02393, PLN02393, leucoanthocyanidin dioxygenase | 3e-54 | |
| PLN02947 | 374 | PLN02947, PLN02947, oxidoreductase | 1e-43 | |
| PLN03178 | 360 | PLN03178, PLN03178, leucoanthocyanidin dioxygenase | 6e-41 | |
| PLN02639 | 337 | PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy | 3e-36 | |
| PLN00417 | 348 | PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy | 3e-36 | |
| PLN02254 | 358 | PLN02254, PLN02254, gibberellin 3-beta-dioxygenase | 5e-35 | |
| PLN02704 | 335 | PLN02704, PLN02704, flavonol synthase | 5e-35 | |
| PLN03001 | 262 | PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy | 2e-34 | |
| PLN02276 | 361 | PLN02276, PLN02276, gibberellin 20-oxidase | 5e-34 | |
| PLN02912 | 348 | PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy | 6e-32 | |
| PLN02904 | 357 | PLN02904, PLN02904, oxidoreductase | 2e-30 | |
| PLN02750 | 345 | PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy | 3e-28 | |
| PLN02403 | 303 | PLN02403, PLN02403, aminocyclopropanecarboxylate o | 1e-27 | |
| PLN02515 | 358 | PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di | 2e-27 | |
| COG3491 | 322 | COG3491, PcbC, Isopenicillin N synthase and relate | 3e-27 | |
| PLN02299 | 321 | PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl | 7e-27 | |
| pfam03171 | 96 | pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe | 2e-25 | |
| PTZ00273 | 320 | PTZ00273, PTZ00273, oxidase reductase; Provisional | 1e-23 | |
| PLN02984 | 341 | PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy | 1e-22 | |
| PLN02156 | 335 | PLN02156, PLN02156, gibberellin 2-beta-dioxygenase | 4e-20 | |
| PLN02997 | 325 | PLN02997, PLN02997, flavonol synthase | 3e-18 | |
| PLN02485 | 329 | PLN02485, PLN02485, oxidoreductase | 4e-17 | |
| PLN02365 | 300 | PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy | 4e-13 | |
| PLN03002 | 332 | PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy | 4e-11 | |
| pfam14226 | 113 | pfam14226, DIOX_N, non-haem dioxygenase in morphin | 5e-08 | |
| PLN02912 | 348 | PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy | 3e-07 | |
| PLN02639 | 337 | PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy | 2e-04 |
| >gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 | Back alignment and domain information |
|---|
Score = 298 bits (764), Expect = e-101
Identities = 140/292 (47%), Positives = 177/292 (60%), Gaps = 54/292 (18%)
Query: 1 MEAKATVIGNSLVEPSILELANNLPLTTVPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHT 60
MEAK +S++ PS+ E+ +TTVPPRYVR + D I D + ++P+IDM
Sbjct: 1 MEAKGATQWSSIIVPSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKR 60
Query: 61 LLSGD--DSELEKLDHACKEWGFFQ----------------------------------- 83
L S DSE+EKLD ACKEWGFFQ
Sbjct: 61 LCSSTAMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQR 120
Query: 84 ----------------QKLDWGYGFTMFTLPTHLRKPHLFPKLPLPFRDDLEVYLTELKN 127
QKLDW F + P LRKPHLFPKLPLPFRD LE Y E+K+
Sbjct: 121 PGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLETYSAEVKS 180
Query: 128 LTLKILDLMAKALRMDPNDMKELFENGM-QSLRMNYYPPCPQPEQVLGFKPHSDGSVLTI 186
+ + MA AL + P +M++LF++ + QS+RMNYYPPCPQP+QV+G PHSD LTI
Sbjct: 181 IAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTI 240
Query: 187 LLQINEMDGLQIKKDGKWFAVKPLPDALIVNVGDVLEIFSNGTYRNIEHRAL 238
LLQ+NE++GLQIKKDGKW +VKPLP+AL+VNVGD+LEI +NGTYR+IEHR +
Sbjct: 241 LLQVNEVEGLQIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGV 292
|
Length = 357 |
| >gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein | Back alignment and domain information |
|---|
| >gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein | Back alignment and domain information |
|---|
| >gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase | Back alignment and domain information |
|---|
| >gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein | Back alignment and domain information |
|---|
| >gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein | Back alignment and domain information |
|---|
| >gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase | Back alignment and domain information |
|---|
| >gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase | Back alignment and domain information |
|---|
| >gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein | Back alignment and domain information |
|---|
| >gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase | Back alignment and domain information |
|---|
| >gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein | Back alignment and domain information |
|---|
| >gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase | Back alignment and domain information |
|---|
| >gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein | Back alignment and domain information |
|---|
| >gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase | Back alignment and domain information |
|---|
| >gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase | Back alignment and domain information |
|---|
| >gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase | Back alignment and domain information |
|---|
| >gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein | Back alignment and domain information |
|---|
| >gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase | Back alignment and domain information |
|---|
| >gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase | Back alignment and domain information |
|---|
| >gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase | Back alignment and domain information |
|---|
| >gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase | Back alignment and domain information |
|---|
| >gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein | Back alignment and domain information |
|---|
| >gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal | Back alignment and domain information |
|---|
| >gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein | Back alignment and domain information |
|---|
| >gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 238 | |||
| PLN02216 | 357 | protein SRG1 | 100.0 | |
| PLN02758 | 361 | oxidoreductase, 2OG-Fe(II) oxygenase family protei | 100.0 | |
| PLN02947 | 374 | oxidoreductase | 100.0 | |
| PLN02393 | 362 | leucoanthocyanidin dioxygenase like protein | 100.0 | |
| PLN03178 | 360 | leucoanthocyanidin dioxygenase; Provisional | 100.0 | |
| PLN02912 | 348 | oxidoreductase, 2OG-Fe(II) oxygenase family protei | 100.0 | |
| PLN02254 | 358 | gibberellin 3-beta-dioxygenase | 100.0 | |
| PLN02904 | 357 | oxidoreductase | 100.0 | |
| PLN02639 | 337 | oxidoreductase, 2OG-Fe(II) oxygenase family protei | 100.0 | |
| PLN00417 | 348 | oxidoreductase, 2OG-Fe(II) oxygenase family protei | 100.0 | |
| PLN02515 | 358 | naringenin,2-oxoglutarate 3-dioxygenase | 100.0 | |
| PLN02704 | 335 | flavonol synthase | 100.0 | |
| KOG0143 | 322 | consensus Iron/ascorbate family oxidoreductases [S | 100.0 | |
| PLN02276 | 361 | gibberellin 20-oxidase | 100.0 | |
| PLN02750 | 345 | oxidoreductase, 2OG-Fe(II) oxygenase family protei | 100.0 | |
| PLN02997 | 325 | flavonol synthase | 100.0 | |
| PLN02403 | 303 | aminocyclopropanecarboxylate oxidase | 100.0 | |
| PLN02299 | 321 | 1-aminocyclopropane-1-carboxylate oxidase | 100.0 | |
| PTZ00273 | 320 | oxidase reductase; Provisional | 100.0 | |
| PLN02156 | 335 | gibberellin 2-beta-dioxygenase | 100.0 | |
| PLN02485 | 329 | oxidoreductase | 100.0 | |
| PLN03002 | 332 | oxidoreductase, 2OG-Fe(II) oxygenase family protei | 100.0 | |
| PLN02984 | 341 | oxidoreductase, 2OG-Fe(II) oxygenase family protei | 100.0 | |
| COG3491 | 322 | PcbC Isopenicillin N synthase and related dioxygen | 100.0 | |
| PLN02365 | 300 | 2-oxoglutarate-dependent dioxygenase | 100.0 | |
| PLN03001 | 262 | oxidoreductase, 2OG-Fe(II) oxygenase family protei | 100.0 | |
| PF03171 | 98 | 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent | 99.85 | |
| PLN03176 | 120 | flavanone-3-hydroxylase; Provisional | 98.94 | |
| PF14226 | 116 | DIOX_N: non-haem dioxygenase in morphine synthesis | 98.86 | |
| PF13640 | 100 | 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; | 93.43 | |
| PRK05467 | 226 | Fe(II)-dependent oxygenase superfamily protein; Pr | 91.73 | |
| smart00702 | 178 | P4Hc Prolyl 4-hydroxylase alpha subunit homologues | 89.18 |
| >PLN02216 protein SRG1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-62 Score=442.63 Aligned_cols=238 Identities=58% Similarity=1.010 Sum_probs=204.7
Q ss_pred CcccccccCCCCccccHHHHHhcCCCCCCCCCccCCCCCCCCCCCCCCCCCCCceeeCCCCCCCCH--HHHHHHHHHHHH
Q 026453 1 MEAKATVIGNSLVEPSILELANNLPLTTVPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHTLLSGDD--SELEKLDHACKE 78 (238)
Q Consensus 1 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~vP~~y~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~--~~~~~l~~A~~~ 78 (238)
|+.++.+-..++.++.||+++.+.++++||++|++|.++++.+........+||+|||+.+.+++. +++++|++||++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~p~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~ 80 (357)
T PLN02216 1 MEAKGATQWSSIIVPSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTAMDSEVEKLDFACKE 80 (357)
T ss_pred CCccccCcCCCccchhHHHHHhcCCCCCCCHhhCcCcccCCccccccCcCCCCCeEEChhccCCccHHHHHHHHHHHHHH
Confidence 555544433355678899998754688999999999999874321111124799999999876553 477999999999
Q ss_pred cccce---------------------------------------------------eecccccccccccCCCCCCCCCCC
Q 026453 79 WGFFQ---------------------------------------------------QKLDWGYGFTMFTLPTHLRKPHLF 107 (238)
Q Consensus 79 ~GfF~---------------------------------------------------~~~dw~e~~~~~~~p~~~~~~~~w 107 (238)
||||| ++.||+|.|++...|.....++.|
T Consensus 81 ~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~W 160 (357)
T PLN02216 81 WGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLF 160 (357)
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeeccCcccccchhc
Confidence 99999 235899998877666655678899
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHhc-cceeeEeeeeCCCCCCcCcccccccccCCcceE
Q 026453 108 PKLPLPFRDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFEN-GMQSLRMNYYPPCPQPEQVLGFKPHSDGSVLTI 186 (238)
Q Consensus 108 P~~~~~fr~~~~~y~~~~~~l~~~ll~~ls~~Lgl~~~~~~~~~~~-~~~~lr~~~YPp~p~p~~~~g~~~HtD~~~lTl 186 (238)
|+.|+.||+++++|+++|++|+.+|+++|+++|||++++|.+.+.. ..+.||+|||||||+++.++|+++|||+|+|||
T Consensus 161 P~~p~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTl 240 (357)
T PLN02216 161 PKLPLPFRDTLETYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTI 240 (357)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEE
Confidence 9999999999999999999999999999999999999999998875 356899999999999999999999999999999
Q ss_pred EeecCCCCCeeeeeCCeeEEecCCCCcEEEEhhHHHHHHhCCcccCcccccC
Q 026453 187 LLQINEMDGLQIKKDGKWFAVKPLPDALIVNVGDVLEIFSNGTYRNIEHRAL 238 (238)
Q Consensus 187 L~q~~~v~GLqv~~~g~W~~V~p~p~~~vVnvGd~le~~SnG~~kS~~HRVv 238 (238)
|+|+++++||||+++|+|+.|+|+||++|||+||+||+||||+|||++|||+
T Consensus 241 L~q~~~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~HRVv 292 (357)
T PLN02216 241 LLQVNEVEGLQIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGV 292 (357)
T ss_pred EEecCCCCceeEEECCEEEECCCCCCeEEEEcchhhHhhcCCeeeccCceee
Confidence 9996679999999999999999999999999999999999999999999995
|
|
| >PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein | Back alignment and domain information |
|---|
| >PLN02947 oxidoreductase | Back alignment and domain information |
|---|
| >PLN02393 leucoanthocyanidin dioxygenase like protein | Back alignment and domain information |
|---|
| >PLN03178 leucoanthocyanidin dioxygenase; Provisional | Back alignment and domain information |
|---|
| >PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein | Back alignment and domain information |
|---|
| >PLN02254 gibberellin 3-beta-dioxygenase | Back alignment and domain information |
|---|
| >PLN02904 oxidoreductase | Back alignment and domain information |
|---|
| >PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein | Back alignment and domain information |
|---|
| >PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein | Back alignment and domain information |
|---|
| >PLN02515 naringenin,2-oxoglutarate 3-dioxygenase | Back alignment and domain information |
|---|
| >PLN02704 flavonol synthase | Back alignment and domain information |
|---|
| >KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
| >PLN02276 gibberellin 20-oxidase | Back alignment and domain information |
|---|
| >PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein | Back alignment and domain information |
|---|
| >PLN02997 flavonol synthase | Back alignment and domain information |
|---|
| >PLN02403 aminocyclopropanecarboxylate oxidase | Back alignment and domain information |
|---|
| >PLN02299 1-aminocyclopropane-1-carboxylate oxidase | Back alignment and domain information |
|---|
| >PTZ00273 oxidase reductase; Provisional | Back alignment and domain information |
|---|
| >PLN02156 gibberellin 2-beta-dioxygenase | Back alignment and domain information |
|---|
| >PLN02485 oxidoreductase | Back alignment and domain information |
|---|
| >PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein | Back alignment and domain information |
|---|
| >PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein | Back alignment and domain information |
|---|
| >COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] | Back alignment and domain information |
|---|
| >PLN02365 2-oxoglutarate-dependent dioxygenase | Back alignment and domain information |
|---|
| >PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein | Back alignment and domain information |
|---|
| >PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit | Back alignment and domain information |
|---|
| >PLN03176 flavanone-3-hydroxylase; Provisional | Back alignment and domain information |
|---|
| >PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A | Back alignment and domain information |
|---|
| >PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A | Back alignment and domain information |
|---|
| >PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional | Back alignment and domain information |
|---|
| >smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 238 | ||||
| 2brt_A | 355 | Anthocyanidin Synthase From Arabidopsis Thaliana Co | 4e-21 | ||
| 1gp5_A | 356 | Anthocyanidin Synthase From Arabidopsis Thaliana Co | 4e-21 | ||
| 1gp4_A | 356 | Anthocyanidin Synthase From Arabidopsis Thaliana (S | 6e-21 | ||
| 1w9y_A | 319 | The Structure Of Acc Oxidase Length = 319 | 9e-19 | ||
| 3oox_A | 312 | Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas | 2e-11 | ||
| 3on7_A | 280 | Crystal Structure Of A Putative Oxygenase (So_2589) | 3e-06 |
| >pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 | Back alignment and structure |
|
| >pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 | Back alignment and structure |
| >pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 | Back alignment and structure |
| >pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 | Back alignment and structure |
| >pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 | Back alignment and structure |
| >pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 238 | |||
| 1gp6_A | 356 | Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep | 5e-93 | |
| 1w9y_A | 319 | 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge | 3e-85 | |
| 1dcs_A | 311 | Deacetoxycephalosporin C synthase; ferrous oxygena | 2e-52 | |
| 3on7_A | 280 | Oxidoreductase, iron/ascorbate family; structural | 3e-45 | |
| 1odm_A | 331 | Isopenicillin N synthase; antibiotic biosynthesis, | 2e-41 | |
| 3oox_A | 312 | Putative 2OG-Fe(II) oxygenase family protein; stru | 8e-38 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-04 |
| >1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 | Back alignment and structure |
|---|
Score = 276 bits (707), Expect = 5e-93
Identities = 73/289 (25%), Positives = 124/289 (42%), Gaps = 67/289 (23%)
Query: 15 PSILELANNLPLTTVPPRYVRPEIDHPLIRN-----DDSSAQQLPVIDMHTLLSGDDS-- 67
+ LA + + ++P Y+RP+ + I + Q+P ID+ + S D+
Sbjct: 5 ERVESLAKS-GIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIR 63
Query: 68 --ELEKLDHACKEWGFFQ------------------------------------------ 83
+E+L A +WG
Sbjct: 64 ENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQ 123
Query: 84 -----------QKLDWGYGFTMFTLPTHLRKPHLFPKLPLPFRDDLEVYLTELKNLTLKI 132
+L+W F P R ++PK P + + Y L+ L K+
Sbjct: 124 GYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKV 183
Query: 133 LDLMAKALRMDPNDMKELF---ENGMQSLRMNYYPPCPQPEQVLGFKPHSDGSVLTILLQ 189
++ L ++P+ +++ E + +++NYYP CPQPE LG + H+D S LT +L
Sbjct: 184 FKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH 243
Query: 190 INEMDGLQIKKDGKWFAVKPLPDALIVNVGDVLEIFSNGTYRNIEHRAL 238
N + GLQ+ +GKW K +PD++++++GD LEI SNG Y++I HR L
Sbjct: 244 -NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGL 291
|
| >1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 | Back alignment and structure |
|---|
| >1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 | Back alignment and structure |
|---|
| >3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 | Back alignment and structure |
|---|
| >1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 | Back alignment and structure |
|---|
| >3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 238 | |||
| 1gp6_A | 356 | Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep | 100.0 | |
| 1w9y_A | 319 | 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge | 100.0 | |
| 3oox_A | 312 | Putative 2OG-Fe(II) oxygenase family protein; stru | 100.0 | |
| 1odm_A | 331 | Isopenicillin N synthase; antibiotic biosynthesis, | 100.0 | |
| 3on7_A | 280 | Oxidoreductase, iron/ascorbate family; structural | 100.0 | |
| 1dcs_A | 311 | Deacetoxycephalosporin C synthase; ferrous oxygena | 100.0 | |
| 3dkq_A | 243 | PKHD-type hydroxylase SBAL_3634; putative oxygenas | 91.97 |
| >1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-61 Score=432.37 Aligned_cols=224 Identities=32% Similarity=0.662 Sum_probs=197.7
Q ss_pred ccccHHHHHhcCCCCCCCCCccCCCCCCCCCCCC--CC---CCCCCceeeCCCCCCCCHH----HHHHHHHHHHHcccce
Q 026453 13 VEPSILELANNLPLTTVPPRYVRPEIDHPLIRND--DS---SAQQLPVIDMHTLLSGDDS----ELEKLDHACKEWGFFQ 83 (238)
Q Consensus 13 ~~~~v~~l~~~~~~~~vP~~y~~~~~~~~~~~~~--~~---~~~~iPvIDls~l~~~~~~----~~~~l~~A~~~~GfF~ 83 (238)
++++||+|+++ ++++||++|++|.++++.+... .. ...+||||||+.|.+++++ .+++|.+||++|||||
T Consensus 3 ~~~~v~~l~~~-~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~ 81 (356)
T 1gp6_A 3 AVERVESLAKS-GIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMH 81 (356)
T ss_dssp CCCCHHHHHHT-TCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEE
T ss_pred CcccHHHHHhc-CCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEE
Confidence 46789999998 8999999999998877653210 00 0136999999999766643 5689999999999999
Q ss_pred -----------------------------------------------------eecccccccccccCCCCCCCCCCCCCC
Q 026453 84 -----------------------------------------------------QKLDWGYGFTMFTLPTHLRKPHLFPKL 110 (238)
Q Consensus 84 -----------------------------------------------------~~~dw~e~~~~~~~p~~~~~~~~wP~~ 110 (238)
++.||+|+|.+...|......+.||+.
T Consensus 82 v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~ 161 (356)
T 1gp6_A 82 LINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKT 161 (356)
T ss_dssp EESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCS
T ss_pred EeCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCCc
Confidence 134788888887666544567899999
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHh---ccceeeEeeeeCCCCCCcCcccccccccCCcceEE
Q 026453 111 PLPFRDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFE---NGMQSLRMNYYPPCPQPEQVLGFKPHSDGSVLTIL 187 (238)
Q Consensus 111 ~~~fr~~~~~y~~~~~~l~~~ll~~ls~~Lgl~~~~~~~~~~---~~~~~lr~~~YPp~p~p~~~~g~~~HtD~~~lTlL 187 (238)
++.||+++++|+++|.+++.+|+++|+++|||++++|.+.+. ...+.||+|||||||+|+.++|+++|||+|+||||
T Consensus 162 ~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL 241 (356)
T 1gp6_A 162 PSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFI 241 (356)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEE
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEEE
Confidence 999999999999999999999999999999999999999987 46778999999999999999999999999999999
Q ss_pred eecCCCCCeeeeeCCeeEEecCCCCcEEEEhhHHHHHHhCCcccCcccccC
Q 026453 188 LQINEMDGLQIKKDGKWFAVKPLPDALIVNVGDVLEIFSNGTYRNIEHRAL 238 (238)
Q Consensus 188 ~q~~~v~GLqv~~~g~W~~V~p~p~~~vVnvGd~le~~SnG~~kS~~HRVv 238 (238)
+| ++++||||+++|+|++|+|+||+||||+||+||+||||+|||++|||+
T Consensus 242 ~q-d~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv 291 (356)
T 1gp6_A 242 LH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGL 291 (356)
T ss_dssp EE-CSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEEC
T ss_pred EE-cCCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceec
Confidence 99 789999999999999999999999999999999999999999999996
|
| >1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X | Back alignment and structure |
|---|
| >3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} | Back alignment and structure |
|---|
| >1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... | Back alignment and structure |
|---|
| >3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} | Back alignment and structure |
|---|
| >1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* | Back alignment and structure |
|---|
| >3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 238 | ||||
| d1gp6a_ | 349 | b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr | 1e-33 | |
| d1w9ya1 | 307 | b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla | 2e-25 | |
| d1dcsa_ | 311 | b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S | 3e-24 | |
| d1odma_ | 329 | b.82.2.1 (A:) Isopenicillin N synthase {Emericella | 1e-11 | |
| d1odma_ | 329 | b.82.2.1 (A:) Isopenicillin N synthase {Emericella | 2e-06 |
| >d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: Clavaminate synthase-like family: Penicillin synthase-like domain: Anthocyanidin synthase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 122 bits (306), Expect = 1e-33
Identities = 72/289 (24%), Positives = 124/289 (42%), Gaps = 67/289 (23%)
Query: 15 PSILELANNLPLTTVPPRYVRPEIDHPLIRNDDSSAQ-----QLPVIDMHTLLSGDDSE- 68
+ LA + + ++P Y+RP+ + I + + Q+P ID+ + S D+
Sbjct: 4 ERVESLAKS-GIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIR 62
Query: 69 ---LEKLDHACKEWGFFQ------------------------------------------ 83
+E+L A +WG
Sbjct: 63 ENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQ 122
Query: 84 -----------QKLDWGYGFTMFTLPTHLRKPHLFPKLPLPFRDDLEVYLTELKNLTLKI 132
+L+W F P R ++PK P + + Y L+ L K+
Sbjct: 123 GYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKV 182
Query: 133 LDLMAKALRMDPNDMKELF---ENGMQSLRMNYYPPCPQPEQVLGFKPHSDGSVLTILLQ 189
++ L ++P+ +++ E + +++NYYP CPQPE LG + H+D S LT +
Sbjct: 183 FKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT-FIL 241
Query: 190 INEMDGLQIKKDGKWFAVKPLPDALIVNVGDVLEIFSNGTYRNIEHRAL 238
N + GLQ+ +GKW K +PD++++++GD LEI SNG Y++I HR L
Sbjct: 242 HNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGL 290
|
| >d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 | Back information, alignment and structure |
|---|
| >d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 | Back information, alignment and structure |
|---|
| >d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 | Back information, alignment and structure |
|---|
| >d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 238 | |||
| d1gp6a_ | 349 | Anthocyanidin synthase {Mouse-ear cress (Arabidops | 100.0 | |
| d1w9ya1 | 307 | 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun | 100.0 | |
| d1odma_ | 329 | Isopenicillin N synthase {Emericella nidulans [Tax | 100.0 | |
| d1dcsa_ | 311 | Deacetoxycephalosporin C synthase {Streptomyces cl | 100.0 | |
| d2fdia1 | 200 | Alkylated DNA repair protein AlkB {Escherichia col | 82.48 |
| >d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: Clavaminate synthase-like family: Penicillin synthase-like domain: Anthocyanidin synthase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=1.9e-57 Score=404.06 Aligned_cols=224 Identities=32% Similarity=0.664 Sum_probs=191.9
Q ss_pred ccccHHHHHhcCCCCCCCCCccCCCCCCCCCCC-----CCCCCCCCceeeCCCCCCCCHH----HHHHHHHHHHHcccce
Q 026453 13 VEPSILELANNLPLTTVPPRYVRPEIDHPLIRN-----DDSSAQQLPVIDMHTLLSGDDS----ELEKLDHACKEWGFFQ 83 (238)
Q Consensus 13 ~~~~v~~l~~~~~~~~vP~~y~~~~~~~~~~~~-----~~~~~~~iPvIDls~l~~~~~~----~~~~l~~A~~~~GfF~ 83 (238)
.+..||+|+++ |+++||++|++|+++++.+.. ....+.+||||||+.|.+++++ .+++|++||++|||||
T Consensus 2 ~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~ 80 (349)
T d1gp6a_ 2 AVERVESLAKS-GIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMH 80 (349)
T ss_dssp CCCCHHHHHHT-TCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEE
T ss_pred CCcchHHHHhC-CCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEE
Confidence 46789999999 999999999999999876532 1223468999999999888763 4589999999999999
Q ss_pred -----------------------------------------------------eecccccccccccCCCCCCCCCCCCCC
Q 026453 84 -----------------------------------------------------QKLDWGYGFTMFTLPTHLRKPHLFPKL 110 (238)
Q Consensus 84 -----------------------------------------------------~~~dw~e~~~~~~~p~~~~~~~~wP~~ 110 (238)
...+|.+.++....+......+.||+.
T Consensus 81 l~nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~ 160 (349)
T d1gp6a_ 81 LINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKT 160 (349)
T ss_dssp EESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCS
T ss_pred EEccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcccccccccccccccccc
Confidence 112222222222223333456899999
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHh---ccceeeEeeeeCCCCCCcCcccccccccCCcceEE
Q 026453 111 PLPFRDDLEVYLTELKNLTLKILDLMAKALRMDPNDMKELFE---NGMQSLRMNYYPPCPQPEQVLGFKPHSDGSVLTIL 187 (238)
Q Consensus 111 ~~~fr~~~~~y~~~~~~l~~~ll~~ls~~Lgl~~~~~~~~~~---~~~~~lr~~~YPp~p~p~~~~g~~~HtD~~~lTlL 187 (238)
++.|++.+++|+++|.+++.+|+++++++||+++++|.+.+. ...+.||+||||||+.+...+|+++|||+|+||||
T Consensus 161 ~~~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL 240 (349)
T d1gp6a_ 161 PSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFI 240 (349)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEE
T ss_pred cchHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEEE
Confidence 999999999999999999999999999999999999998874 33568999999999999999999999999999999
Q ss_pred eecCCCCCeeeeeCCeeEEecCCCCcEEEEhhHHHHHHhCCcccCcccccC
Q 026453 188 LQINEMDGLQIKKDGKWFAVKPLPDALIVNVGDVLEIFSNGTYRNIEHRAL 238 (238)
Q Consensus 188 ~q~~~v~GLqv~~~g~W~~V~p~p~~~vVnvGd~le~~SnG~~kS~~HRVv 238 (238)
+| ++++||||+++|+|+.|+|.+|++|||+||+||+||||+|||++|||+
T Consensus 241 ~q-~~~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv 290 (349)
T d1gp6a_ 241 LH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGL 290 (349)
T ss_dssp EE-CSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEEC
T ss_pred ec-cCCcceeeecCCceEEccCCCCCeeeeHHhHHHHHhCCCccCcCcccc
Confidence 99 899999999999999999999999999999999999999999999996
|
| >d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} | Back information, alignment and structure |
|---|
| >d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
| >d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
| >d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|