Citrus Sinensis ID: 026465

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MYGQSQSMNISSQMSGGGAAADEDDVSVAADDHHLSYDPHSALENGIVVVEDVAHDSGYATGGNELSNSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSSSPQGMEVIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVGV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccEEEEcccccHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEccccHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEHHHHHHHHHHcccccccEEccccccccccccccccccccccccccEEEccccccccccccccccccccccHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mygqsqsmnissqmsgggaaadeddvsvaaddhhlsydphsaleNGIVVVEdvahdsgyatggnelsnssqltlsfrgqvyvfdsvtPDKVQAVLLLLGgcelssspqgmeviphsqrgiadypakctqpqraaSLDRFRQKRKERCFDKKVRYSVRQEVALRMQRnkgqftsakkceggalgwsnaqdpgqddspsetscthcgisskstpmmrrgpsgprslcnacglfwankvgv
Flexible Loop (DISEMBL)
MYGQSQSMNISSQMSGGGAAADEDDVSVAADDHHLSYDPHSALENGIVVVEDVAHDSGYATggnelsnssqLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSSSPQGMEVIPHSQRGIADypakctqpqraasldrfrqkrkercfdkkvrysvRQEVAlrmqrnkgqftsakkceggaLGWSNAQDPGQDDSPSETSCTHcgisskstpmmrRGPSGPRSLCNACGLFWANKVGV
Low Complexity Region (SEG)
MYgqsqsmnissqmsgggaaadeddvsvaaddHHLSYDPHSALENGIVVVEDVAHDSGYATGGNELSNSSQLTLSFRGQVYVFDSVTPDKVQAVllllggcelsssPQGMEVIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVGV
Disordered region (IsUnstruct)
****************************************SALENGIVVVEDVAHDSGYATG********QLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCEL*******************************************CFDKKVRYSVR******************************************************************LCNACGLFWAN****
Disordered Region (DISOPRED)
*******************************************************************************VYVFDSVT**************************************************************************************AKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVG*
Disordered Region (DISEMBL)
**********************EDDVSVAADDHHLSYDPHSALENGIVVVEDVAHDSGYATGGNELSNSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSSSPQGMEVIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKCEGGALGWSNA*****************GISSKSTPMMRRGPSGPRSLCNACGLFWANKVGV
Disordered Region (DISPRO)
*******************************************************************NSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCEL**********************KCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRN******************************ETSC**C*ISSKSTP*MRRGPSGPRSLCNACGLFWANKVG*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYGQSQSMNISSQMSGGGAAADEDDVSVAADDHHLSYDPHSALENGIVVVEDVAHDSGYATGGNELSNSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSSSPQGMEVIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVGV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	238	2.2.26 [Sep-21-2011]
Q9LRH6	309	GATA transcription factor	yes	no	0.978	0.754	0.528	5e-62
Q8H1G0	302	GATA transcription factor	no	no	0.873	0.688	0.502	8e-52
Q8GXL7	297	GATA transcription factor	no	no	0.714	0.572	0.572	6e-50
Q8L500	468	Two-component response re	no	no	0.5	0.254	0.338	8e-09
Q93WK5	727	Two-component response re	no	no	0.172	0.056	0.609	2e-07
Q689G9	518	Two-component response re	no	no	0.176	0.081	0.595	5e-07
Q689G6	623	Two-component response re	no	no	0.172	0.065	0.585	1e-06
Q6LA42	558	Two-component response re	no	no	0.176	0.075	0.547	2e-06
B0G188	695	GATA zinc finger domain-c	yes	no	0.159	0.054	0.55	3e-06
Q9LVG4	495	Two-component response re	no	no	0.172	0.082	0.585	3e-06

>sp|Q9LRH6|GAT25_ARATH GATA transcription factor 25 OS=Arabidopsis thaliana GN=GATA25 PE=2 SV=2

 Score =  237 bits (605), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 132/250 (52%), Positives = 166/250 (66%), Gaps = 17/250 (6%)

Query: 1   MYGQSQSMNISSQMSGGGAAADEDDVSVAADDHHLSYD-----PHSALENGIV--VVEDV 53
           M+G+  S+  ++Q+    A+A ED VS +A   H+ YD     PH     G    ++ D 
Sbjct: 1   MFGR-HSIIPNNQIGTASASAGEDHVSASATSGHIPYDDMEEIPHPDSIYGAASDLIPDG 59

Query: 54  AHDSGYATGGNEL------SNSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGG-CELSSS 106
           +    + + G+EL        ++QLT+SFRGQVYVFD+V  DKV AVL LLGG  EL+  
Sbjct: 60  SQLVAHRSDGSELLVSRPPEGANQLTISFRGQVYVFDAVGADKVDAVLSLLGGSTELAPG 119

Query: 107 PQGMEVIPH-SQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQ 165
           PQ ME+    +   + +Y ++C+ PQRA SLDRFR+KR  RCF+KKVRY VRQEVALRM 
Sbjct: 120 PQVMELAQQQNHMPVVEYQSRCSLPQRAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMA 179

Query: 166 RNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLC 225
           RNKGQFTS+K  +G A      QD  QDD+  E SCTHCGISSK TPMMRRGPSGPR+LC
Sbjct: 180 RNKGQFTSSKMTDG-AYNSGTDQDSAQDDAHPEISCTHCGISSKCTPMMRRGPSGPRTLC 238

Query: 226 NACGLFWANK 235
           NACGLFWAN+
Sbjct: 239 NACGLFWANR 248

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1G0|GAT28_ARATH GATA transcription factor 28 OS=Arabidopsis thaliana GN=GATA28 PE=2 SV=1

 Score =  203 bits (517), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 124/247 (50%), Positives = 151/247 (61%), Gaps = 39/247 (15%)

Query: 26  VSVAADDHHLSYDPHSA--LENGIVVVEDVAHDSGYATG-------------GNELSN-- 68
           +  A D  H+ ++ H+   + NG  +V+D A D G A G             GN   N  
Sbjct: 13  IREAQDPMHVQFEHHALHHIHNGSGMVDDQA-DDGNAGGMSEGVETDIPSHPGNVTDNRG 71

Query: 69  ---------SSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCEL-SSSPQGMEVIPHSQR 118
                      QLTLSF+GQVYVFDSV P+KVQAVLLLLGG EL  ++P G+   PH   
Sbjct: 72  EVVDRGSEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLGS-PHQNN 130

Query: 119 GIADYPA---KCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAK 175
            ++  P    + + PQR ASL RFR+KRK R FDKK+RY+VR+EVALRMQRNKGQFTSAK
Sbjct: 131 RVSSLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAK 190

Query: 176 KC--EGGALG--WSNAQDPGQDDSPS---ETSCTHCGISSKSTPMMRRGPSGPRSLCNAC 228
               E  + G  W + Q    + S +   E SC HCGI  KSTPMMRRGP+GPR+LCNAC
Sbjct: 191 SNNDEAASAGSSWGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRTLCNAC 250

Query: 229 GLFWANK 235
           GL WANK
Sbjct: 251 GLMWANK 257

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXL7|GAT24_ARATH GATA transcription factor 24 OS=Arabidopsis thaliana GN=GATA24 PE=2 SV=2

 Score =  197 bits (500), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 103/180 (57%), Positives = 122/180 (67%), Gaps = 10/180 (5%)

Query: 66  LSNSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSSSPQGMEVIPHSQR---GIAD 122
           + N  QLTLSF+GQVYVFD V+P+KVQAVLLLLGG E+  +       PH      G++ 
Sbjct: 74  IENGDQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTLGSPHQNNRVLGLSG 133

Query: 123 YPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKC--EGG 180
            P + + PQR ASL RFR+KRK R FDK +RY+VR+EVALRMQR KGQFTSAK    + G
Sbjct: 134 TPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSSNDDSG 193

Query: 181 ALG--WSNAQD---PGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANK 235
           + G  W + Q     G +    E  C HCG S KSTPMMRRGP GPR+LCNACGL WANK
Sbjct: 194 STGSDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANK 253

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L500|APRR9_ARATH Two-component response regulator-like APRR9 OS=Arabidopsis thaliana GN=APRR9 PE=2 SV=2

 Score = 60.8 bits (146), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 14/133 (10%)

Query: 53  VAHDSGYATGGNELSNSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSSSPQGMEV 112
           V  D G AT  +   N    ++SFR QV +  +VT  K  + + +    E ++S +    
Sbjct: 326 VTSDQGSATTSSNQENIGSSSVSFRNQV-LQSTVTNQKQDSPIPVESNREKAASKEVEAG 384

Query: 113 IPHSQRGIADYPAKCTQP-------------QRAASLDRFRQKRKERCFDKKVRYSVRQE 159
              +  GIA   +   +P             QR A+L +FR KRK+RCFDKKVRY  R++
Sbjct: 385 SQSTNEGIAGQSSSTEKPKEEESAKQRWSRSQREAALMKFRLKRKDRCFDKKVRYQSRKK 444

Query: 160 VALRMQRNKGQFT 172
           +A +  R KGQF 
Sbjct: 445 LAEQRPRVKGQFV 457

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WK5|APRR7_ARATH Two-component response regulator-like APRR7 OS=Arabidopsis thaliana GN=APRR7 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 32/41 (78%)

Query: 131 QRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQF 171
           QR A+L +FRQKRKERCF KKVRY  R+++A +  R +GQF
Sbjct: 668 QREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQF 708

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Arabidopsis thaliana (taxid: 3702)

>sp|Q689G9|PRR1_ORYSJ Two-component response regulator-like PRR1 OS=Oryza sativa subsp. japonica GN=PRR1 PE=2 SV=2

 Score = 54.7 bits (130), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 131 QRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFT 172
           +RAA+L +FR KRKERCFDKKVRY  R+++A    R +GQF 
Sbjct: 442 RRAAALAKFRLKRKERCFDKKVRYVNRKKLAETRPRVRGQFV 483

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of PRR73, PRR37, PRR95, PRR59 and PPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q689G6|PRR95_ORYSJ Two-component response regulator-like PRR95 OS=Oryza sativa subsp. japonica GN=PRR95 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 32/41 (78%)

Query: 131 QRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQF 171
           QR A+L++FR KRK+RCF+KKVRY  R+ +A +  R KGQF
Sbjct: 573 QREAALNKFRLKRKDRCFEKKVRYQSRKLLAEQRPRVKGQF 613

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of PRR73, PRR37, PRR95, PRR59 and PPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6LA42|APRR5_ARATH Two-component response regulator-like APRR5 OS=Arabidopsis thaliana GN=APRR5 PE=1 SV=2

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 32/42 (76%)

Query: 131 QRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFT 172
           QR A+L +FR KRK+RC++KKVRY  R+++A +  R KGQF 
Sbjct: 508 QREAALTKFRMKRKDRCYEKKVRYESRKKLAEQRPRIKGQFV 549

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Arabidopsis thaliana (taxid: 3702)

>sp|B0G188|GTAP_DICDI GATA zinc finger domain-containing protein 16 OS=Dictyostelium discoideum GN=gtaP PE=4 SV=1

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 29/40 (72%), Gaps = 2/40 (5%)

Query: 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKV 236
           +E SC  CG+++  TP  RRGP+G ++LCNACGL WA  V
Sbjct: 475 TELSCHTCGVTN--TPEWRRGPNGAKTLCNACGLAWAKSV 512

Dictyostelium discoideum (taxid: 44689)

>sp|Q9LVG4|APRR3_ARATH Two-component response regulator-like APRR3 OS=Arabidopsis thaliana GN=APRR3 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 31/41 (75%)

Query: 131 QRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQF 171
           QR A+L +FR KRKERCF+KKVRY  R+++A +    KGQF
Sbjct: 441 QREAALMKFRLKRKERCFEKKVRYHSRKKLAEQRPHVKGQF 481

Controls photoperiodic flowering response. Component of the circadian clock. Controls the degradation of APRR1/TOC1 by the SCF(ZTL) complex. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
255572876	324	GATA transcription factor, putative [Ric	0.974	0.716	0.668	2e-85
224067118	290	predicted protein [Populus trichocarpa]	0.924	0.758	0.656	3e-81
224084544	288	predicted protein [Populus trichocarpa]	0.945	0.781	0.655	1e-80
356552974	307	PREDICTED: GATA transcription factor 25-	0.978	0.758	0.668	3e-79
356498865	310	PREDICTED: GATA transcription factor 25-	0.957	0.735	0.666	1e-78
225459060	294	PREDICTED: GATA transcription factor 25	0.957	0.775	0.601	4e-77
302398803	306	GATA domain class transcription factor [	0.983	0.764	0.621	5e-77
363808184	286	uncharacterized protein LOC100784789 [Gl	0.852	0.709	0.676	2e-73
356510132	309	PREDICTED: GATA transcription factor 25-	0.840	0.647	0.685	2e-72
302142081	248	unnamed protein product [Vitis vinifera]	0.781	0.75	0.671	3e-70

>gi|255572876|ref|XP_002527370.1| GATA transcription factor, putative [Ricinus communis] gi|223533289|gb|EEF35042.1| GATA transcription factor, putative [Ricinus communis]

 Score =  320 bits (821), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 165/247 (66%), Positives = 190/247 (76%), Gaps = 15/247 (6%)

Query: 1   MYGQSQSMNISSQMSG--GGAAADEDDVSV-AADDHHLSYDPHSALENGIVVVEDVAHDS 57
           MY  SQSMN+  Q+    G    DED V+  + D HH+ Y+  +A   G+V+ +DV+HDS
Sbjct: 1   MYSHSQSMNVHHQIHTPTGPTGDDEDGVAADSIDHHHIRYEDGNA--TGVVLEDDVSHDS 58

Query: 58  GY---ATGGNELS-----NSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSSSPQG 109
            Y   +  G+EL+      SSQLTL+FRGQVYVFD+VTPDKVQAVLLLLGGCEL+S P G
Sbjct: 59  VYVPTSAAGSELAIQGNDVSSQLTLTFRGQVYVFDAVTPDKVQAVLLLLGGCELTSGPHG 118

Query: 110 MEVIPHSQR-GIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNK 168
           +EV   +QR  + DYP +CTQPQRAASL+RFRQKRKER FDKKVRYSVRQEVALRMQRNK
Sbjct: 119 LEVASQNQRSAVVDYPGRCTQPQRAASLNRFRQKRKERNFDKKVRYSVRQEVALRMQRNK 178

Query: 169 GQFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNAC 228
           GQFTS+KK + G  GW   QD GQDDS  ETSCTHCG SSKSTPMMRRGPSGPRSLCNAC
Sbjct: 179 GQFTSSKKSD-GTYGWGGGQDSGQDDSQQETSCTHCGTSSKSTPMMRRGPSGPRSLCNAC 237

Query: 229 GLFWANK 235
           GLFWAN+
Sbjct: 238 GLFWANR 244

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067118|ref|XP_002302364.1| predicted protein [Populus trichocarpa] gi|222844090|gb|EEE81637.1| predicted protein [Populus trichocarpa]

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 164/250 (65%), Positives = 179/250 (71%), Gaps = 30/250 (12%)

Query: 1   MYGQSQSMNISSQMSGGGAAADEDDVSVAADDHHLSYDP-----HSALENGI--VVVEDV 53
           MY  SQ MN+ +Q+           VS   DD     DP     H   E+G   VVVEDV
Sbjct: 1   MYTPSQPMNVHNQI-----------VSPGVDDDGAPADPIDHHHHIHYEDGTPAVVVEDV 49

Query: 54  AHDSGYATGGNELSN--------SSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSS 105
           + DS Y T G   S         SSQLTL+FRGQVYVFDSVTPDKVQAVLLLLGGCEL+ 
Sbjct: 50  SPDSVYVTAGVAASELGIQPSDGSSQLTLTFRGQVYVFDSVTPDKVQAVLLLLGGCELTP 109

Query: 106 SPQGMEVIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQ 165
              G+E+ P +QRG+ +YP +CTQPQRAASL RFRQKRKERCFDKKVRY VRQEVALRMQ
Sbjct: 110 ---GLELTPQNQRGVGEYPPRCTQPQRAASLSRFRQKRKERCFDKKVRYGVRQEVALRMQ 166

Query: 166 RNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLC 225
           RNKGQFTSAKK EGG  GW   QD  QDDS  ETSCTHCG +SKSTPMMRRGPSGPRSLC
Sbjct: 167 RNKGQFTSAKKSEGG-YGWDGGQDSAQDDSQHETSCTHCGTNSKSTPMMRRGPSGPRSLC 225

Query: 226 NACGLFWANK 235
           NACGLFWAN+
Sbjct: 226 NACGLFWANR 235

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224084544|ref|XP_002307332.1| predicted protein [Populus trichocarpa] gi|222856781|gb|EEE94328.1| predicted protein [Populus trichocarpa]

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 160/244 (65%), Positives = 180/244 (73%), Gaps = 19/244 (7%)

Query: 1   MYGQSQSMNISSQMSGGGAAADEDDVSVAADDHHLSYDPHSALENGI-VVVEDVAHDSGY 59
           MY  SQ MN+ +Q++  G     DD    AD   + +  H   E+G   VV+DV+ +S Y
Sbjct: 1   MYTHSQPMNVHNQIASPGV----DDDRAPAD--SIDHHHHIHYEDGTPTVVDDVSPESVY 54

Query: 60  ATGGNELSN--------SSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSSSPQGME 111
              G   S         SSQLTL+FRGQVYVFDSVTPDKVQAVLLLLGGCEL+    G+E
Sbjct: 55  VNAGVAASELGIQPSDCSSQLTLTFRGQVYVFDSVTPDKVQAVLLLLGGCELTP---GLE 111

Query: 112 VIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQF 171
           + P +QRG+ DYP++CTQPQRAASL RFRQKRKERCFDKKVRY VRQEVALRMQRNKGQF
Sbjct: 112 MTPQNQRGVVDYPSRCTQPQRAASLSRFRQKRKERCFDKKVRYGVRQEVALRMQRNKGQF 171

Query: 172 TSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLF 231
           TSAKK EGG  GW   QD G DDS  ETSCTHCG +SKSTPMMRRGPSGPRSLCNACGLF
Sbjct: 172 TSAKKSEGG-YGWDGVQDSGLDDSQQETSCTHCGTNSKSTPMMRRGPSGPRSLCNACGLF 230

Query: 232 WANK 235
           WAN+
Sbjct: 231 WANR 234

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552974|ref|XP_003544834.1| PREDICTED: GATA transcription factor 25-like [Glycine max]

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 159/238 (66%), Positives = 182/238 (76%), Gaps = 5/238 (2%)

Query: 1   MYGQSQSMNISSQMSGGGAAADE-DDVSVAADDHHLSYDPHSALENGIVVVEDVAHDSGY 59
           MYG SQ +++ SQ+ GG +     ++ +V    HH+ Y+ H+  +   VVVEDV  D+ Y
Sbjct: 6   MYGHSQPLSMPSQIGGGESDDGSGNEHAVDGHHHHIQYETHALEDGAAVVVEDVTSDAVY 65

Query: 60  ATGGNELSNSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSS--SPQGMEVIPHSQ 117
            +GG     SSQLTLSFRGQVYVFD+VTPDKVQAVLLLLGGCELSS  SP       H+Q
Sbjct: 66  VSGGGGPVESSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGCELSSGGSPCVDPGAQHNQ 125

Query: 118 RGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKC 177
           RG  ++P KC+ P RAASL RFRQKRKERCFDKKVRYSVRQEVALRM RNKGQFTS+KK 
Sbjct: 126 RGSMEFP-KCSLPHRAASLHRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKK- 183

Query: 178 EGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANK 235
           + GA  +   QD GQDDS SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWAN+
Sbjct: 184 QDGANSYGTDQDSGQDDSQSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANR 241

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498865|ref|XP_003518268.1| PREDICTED: GATA transcription factor 25-like [Glycine max]

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 164/246 (66%), Positives = 183/246 (74%), Gaps = 18/246 (7%)

Query: 1   MYGQSQSMNISSQMSGGGAAADEDDVS-----VAADDHHLSYDPHSALENGI----VVVE 51
           MYG SQ +NI S++  G    + DD S     V    HH+ Y+ H AL++G     VVVE
Sbjct: 6   MYGPSQPLNIPSRIGAG----ERDDGSGNEPAVDGHHHHIQYETH-ALDDGAAGGAVVVE 60

Query: 52  DVAHDSGYATGGNELSNSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSS--SPQG 109
           DV  D+ Y +GG     SSQLTLSFRGQVYVFD+VTPDKVQAVLLLLGGCELSS  SP  
Sbjct: 61  DVTSDAVYVSGGGGPEESSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGCELSSGGSPCV 120

Query: 110 MEVIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKG 169
                 +QRG  ++P KC+ PQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRM RNKG
Sbjct: 121 DPGAQQNQRGSMEFP-KCSLPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMHRNKG 179

Query: 170 QFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACG 229
           QFTS+KK + GA  +   QD GQDDS SETSC HCG SSKSTPMMRRGPSGPRSLCNACG
Sbjct: 180 QFTSSKK-QDGANSYGTDQDSGQDDSQSETSCKHCGTSSKSTPMMRRGPSGPRSLCNACG 238

Query: 230 LFWANK 235
           LFWAN+
Sbjct: 239 LFWANR 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459060|ref|XP_002283753.1| PREDICTED: GATA transcription factor 25 [Vitis vinifera]

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 148/246 (60%), Positives = 183/246 (74%), Gaps = 18/246 (7%)

Query: 1   MYGQSQSMNISSQMSGGGAAADEDD--VSVAADDHHLSYDPHSALENGIV----VVEDVA 54
           MYG  Q M++ +Q++G     D+DD   S + D+ H+ YD H  L++G+V    V  DV 
Sbjct: 1   MYGHPQHMSMHNQIAG-----DDDDGAASESIDNPHVHYDAH-VLQDGVVPGMEVAGDVP 54

Query: 55  HDSGYATGGNELS-----NSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSSSPQG 109
            D+ Y   G+E++      ++QLTLSFRGQVYVFDSVT +KV++VLLLLG  ELSS    
Sbjct: 55  SDAVYVADGSEVALQPSDATNQLTLSFRGQVYVFDSVTHEKVRSVLLLLGTPELSSIAHN 114

Query: 110 MEVIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKG 169
           ME++P +QR + D+P    QP RAASL+RFRQKRKERCFDKK+RY+VRQEVALRMQRNKG
Sbjct: 115 MEIVPQNQRALTDFPGPYNQPHRAASLNRFRQKRKERCFDKKIRYNVRQEVALRMQRNKG 174

Query: 170 QFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACG 229
           QF+S+KK E G   W + QD GQD+SP ET CTHCG SSKSTPMMRRGP+GPRSLCNACG
Sbjct: 175 QFSSSKKSE-GTFSWDSVQDSGQDESPPETLCTHCGTSSKSTPMMRRGPTGPRSLCNACG 233

Query: 230 LFWANK 235
           LFWAN+
Sbjct: 234 LFWANR 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398803|gb|ADL36696.1| GATA domain class transcription factor [Malus x domestica]

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 153/246 (62%), Positives = 183/246 (74%), Gaps = 12/246 (4%)

Query: 1   MYGQSQSMNISSQMSGGGAAADEDDVSVAADDHHLSYDPHSALENGIVVVEDVAHDSGYA 60
           MYG SQ M + + +       D+   + + D+ H+ YD H+  + GIVVVEDV+ D  Y 
Sbjct: 14  MYGHSQDMTMPNPIPA--CDDDDAGAADSIDNAHIQYDSHTLEDGGIVVVEDVSSDGVYV 71

Query: 61  TGGNELSN--------SSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSSSPQGMEV 112
            GG+  S         SSQLTLSFRGQV+VFD+VTP+KVQAVLLLLGG ELS S QG E+
Sbjct: 72  QGGSASSELRGPPYDGSSQLTLSFRGQVFVFDAVTPEKVQAVLLLLGGNELSPSAQGTEL 131

Query: 113 IPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFT 172
              +QR + DYP +C+QP RAASL RFRQKRKERCFDKKVRY VRQEVALRMQRNKGQF+
Sbjct: 132 ASQNQRAMEDYP-RCSQPHRAASLIRFRQKRKERCFDKKVRYGVRQEVALRMQRNKGQFS 190

Query: 173 SAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFW 232
           S+K+ +G +  WS  Q+ GQ+D  +ETSC HCGISSKSTPMMRRGPSGPRSLCNACGLFW
Sbjct: 191 SSKRSDGDS-NWSAGQESGQEDCHAETSCKHCGISSKSTPMMRRGPSGPRSLCNACGLFW 249

Query: 233 ANKVGV 238
           AN+ G+
Sbjct: 250 ANRGGL 255

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808184|ref|NP_001242484.1| uncharacterized protein LOC100784789 [Glycine max] gi|255641630|gb|ACU21087.1| unknown [Glycine max]

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 140/207 (67%), Positives = 161/207 (77%), Gaps = 4/207 (1%)

Query: 29  AADDHHLSYDPHSALENGIVVVEDVAHDSGYATGGNELSNSSQLTLSFRGQVYVFDSVTP 88
           AA DHH+ Y  H+  E+G   VE+V   S        +++SSQLT+SFRGQVYVFD+VTP
Sbjct: 35  AASDHHIHYSSHTIEEDGGATVEEV---SAVPPLEISINDSSQLTISFRGQVYVFDAVTP 91

Query: 89  DKVQAVLLLLGGCELSSSPQGMEVIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCF 148
           DKVQAVLLLLGG EL+S  Q  E+   +Q G  +YPAKC+ PQRAASL+RFRQKRKERCF
Sbjct: 92  DKVQAVLLLLGGNELTSGSQCAELSSQNQTGEEEYPAKCSLPQRAASLNRFRQKRKERCF 151

Query: 149 DKKVRYSVRQEVALRMQRNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISS 208
           DKKVRYSVRQEVALRM RN+GQFTS+K  + G   W + Q+ GQD   SET CTHCGISS
Sbjct: 152 DKKVRYSVRQEVALRMHRNRGQFTSSKN-QDGTNSWGSDQESGQDAVQSETLCTHCGISS 210

Query: 209 KSTPMMRRGPSGPRSLCNACGLFWANK 235
           KSTPMMRRGPSGPRSLCNACGLFWAN+
Sbjct: 211 KSTPMMRRGPSGPRSLCNACGLFWANR 237

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510132|ref|XP_003523794.1| PREDICTED: GATA transcription factor 25-like [Glycine max]

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 144/210 (68%), Positives = 163/210 (77%), Gaps = 10/210 (4%)

Query: 29  AADDHHLSYDPHSALENGIVVVEDVAHDSGYATGGNELS--NSSQLTLSFRGQVYVFDSV 86
           AA DHH+ Y  H+  ++G   VEDV+     A  G E+S  NSSQLTLSFRGQVYVFD+V
Sbjct: 53  AASDHHIHYSSHTIEDDG-AAVEDVS-----AVPGPEISIDNSSQLTLSFRGQVYVFDAV 106

Query: 87  TPDKVQAVLLLLGGCELSSSPQGMEVIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKER 146
           TPDKVQAVLLLLGG EL+S  Q  E+   +Q G  +YPAKC+ P RAASL+RFRQKRKER
Sbjct: 107 TPDKVQAVLLLLGGNELTSGSQCAELSSRNQTGEEEYPAKCSLPHRAASLNRFRQKRKER 166

Query: 147 CFDKKVRYSVRQEVALRMQRNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSET-SCTHCG 205
           CFDKKVRYSVRQEVALRM RNKGQFTS+K  + G   W + Q+ GQD   SET  CTHCG
Sbjct: 167 CFDKKVRYSVRQEVALRMHRNKGQFTSSKN-QDGTNSWGSDQESGQDAVQSETLCCTHCG 225

Query: 206 ISSKSTPMMRRGPSGPRSLCNACGLFWANK 235
           ISSKSTPMMR+GPSGPRSLCNACGLFWAN+
Sbjct: 226 ISSKSTPMMRKGPSGPRSLCNACGLFWANR 255

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142081|emb|CBI19284.3| unnamed protein product [Vitis vinifera]

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 152/192 (79%), Gaps = 6/192 (3%)

Query: 49  VVEDVAHDSGYATGGNELS-----NSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCEL 103
           V  DV  D+ Y   G+E++      ++QLTLSFRGQVYVFDSVT +KV++VLLLLG  EL
Sbjct: 3   VAGDVPSDAVYVADGSEVALQPSDATNQLTLSFRGQVYVFDSVTHEKVRSVLLLLGTPEL 62

Query: 104 SSSPQGMEVIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALR 163
           SS    ME++P +QR + D+P    QP RAASL+RFRQKRKERCFDKK+RY+VRQEVALR
Sbjct: 63  SSIAHNMEIVPQNQRALTDFPGPYNQPHRAASLNRFRQKRKERCFDKKIRYNVRQEVALR 122

Query: 164 MQRNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRS 223
           MQRNKGQF+S+KK E G   W + QD GQD+SP ET CTHCG SSKSTPMMRRGP+GPRS
Sbjct: 123 MQRNKGQFSSSKKSE-GTFSWDSVQDSGQDESPPETLCTHCGTSSKSTPMMRRGPTGPRS 181

Query: 224 LCNACGLFWANK 235
           LCNACGLFWAN+
Sbjct: 182 LCNACGLFWANR 193

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
TAIR|locus:2017582	302	ZML2 "ZIM-LIKE 2" [Arabidopsis	0.714	0.562	0.554	3.5e-43
TAIR|locus:505006360	297	ZML1 "ZIM-like 1" [Arabidopsis	0.714	0.572	0.533	3.2e-42
TAIR|locus:2062749	183	AT2G46670 "AT2G46670" [Arabido	0.495	0.644	0.318	1.5e-08
TAIR|locus:2044376	468	PRR9 "pseudo-response regulato	0.495	0.252	0.325	2.7e-07
TAIR|locus:2083388	149	GATA15 "GATA transcription fac	0.142	0.228	0.555	7.8e-06
UNIPROTKB|G4N7Q5	1101	MGG_03538 "Uncharacterized pro	0.147	0.031	0.594	9.2e-06
TAIR|locus:2151206	727	PRR7 "pseudo-response regulato	0.172	0.056	0.609	1.4e-05
TAIR|locus:2055589	264	GATA2 "GATA transcription fact	0.210	0.189	0.403	1.4e-05
ASPGD|ASPL0000038700	837	lreA [Emericella nidulans (tax	0.180	0.051	0.533	1.6e-05
TAIR|locus:2155919	139	GATA16 "GATA transcription fac	0.121	0.208	0.580	2e-05

TAIR|locus:2017582 ZML2 "ZIM-LIKE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 102/184 (55%), Positives = 120/184 (65%)

Query:    63 GNELSNSSQLTLSFRGQVYVFDSVTPDKVQAVXXXXXXXXX-XXXPQGMEVIPHSQRGIA 121
             G+E     QLTLSF+GQVYVFDSV P+KVQAV             P G+   PH    ++
Sbjct:    77 GSE--QGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLGS-PHQNNRVS 133

Query:   122 DYPA---KCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKC- 177
               P    + + PQR ASL RFR+KRK R FDKK+RY+VR+EVALRMQRNKGQFTSAK   
Sbjct:   134 SLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKSNN 193

Query:   178 -EGGALG--WSNAQDPGQDDSPS---ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLF 231
              E  + G  W + Q    + S +   E SC HCGI  KSTPMMRRGP+GPR+LCNACGL 
Sbjct:   194 DEAASAGSSWGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRTLCNACGLM 253

Query:   232 WANK 235
             WANK
Sbjct:   254 WANK 257

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:505006360 ZML1 "ZIM-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 96/180 (53%), Positives = 113/180 (62%)

Query:    66 LSNSSQLTLSFRGQVYVFDSVTPDKVQAVXXXXXXXXXXXXPQGMEVIPHSQR---GIAD 122
             + N  QLTLSF+GQVYVFD V+P+KVQAV                   PH      G++ 
Sbjct:    74 IENGDQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTLGSPHQNNRVLGLSG 133

Query:   123 YPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKC--EGG 180
              P + + PQR ASL RFR+KRK R FDK +RY+VR+EVALRMQR KGQFTSAK    + G
Sbjct:   134 TPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSSNDDSG 193

Query:   181 ALG--WSNAQD---PGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANK 235
             + G  W + Q     G +    E  C HCG S KSTPMMRRGP GPR+LCNACGL WANK
Sbjct:   194 STGSDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANK 253

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2062749 AT2G46670 "AT2G46670" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 42/132 (31%), Positives = 60/132 (45%)

Query:    53 VAHDSGYATGGNELSNSSQLTLSFRGQVYVFDSVTPDKVQAVXXXXXXXXXXXXPQGMEV 112
             V  D G +T  +   N    ++SFR QV +  +VT  K  +              +    
Sbjct:    41 VRSDQGSSTTSSNQENIGSSSVSFRNQV-LQSTVTNQKQDSPIPVESNREKAASKEVEAG 99

Query:   113 IPHSQRGIADYPAKCTQP-------------QRAASLDRFRQKRKERCFDKKVRYSVRQE 159
                +  GIA   +   +P             QR A+L +FR KRK+RCFDKKVRY  R++
Sbjct:   100 SQSTNEGIAGQSSSTEKPKEEESAKQRWSRSQREAALMKFRLKRKDRCFDKKVRYQSRKK 159

Query:   160 VALRMQRNKGQF 171
             +A +  R KGQF
Sbjct:   160 LAEQRPRVKGQF 171

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2044376 PRR9 "pseudo-response regulator 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 43/132 (32%), Positives = 60/132 (45%)

Query:    53 VAHDSGYATGGNELSNSSQLTLSFRGQVYVFDSVTPDKVQAVXXXXXXXXXXXXPQGMEV 112
             V  D G AT  +   N    ++SFR QV +  +VT  K  +              +    
Sbjct:   326 VTSDQGSATTSSNQENIGSSSVSFRNQV-LQSTVTNQKQDSPIPVESNREKAASKEVEAG 384

Query:   113 IPHSQRGIADYPAKCTQP-------------QRAASLDRFRQKRKERCFDKKVRYSVRQE 159
                +  GIA   +   +P             QR A+L +FR KRK+RCFDKKVRY  R++
Sbjct:   385 SQSTNEGIAGQSSSTEKPKEEESAKQRWSRSQREAALMKFRLKRKDRCFDKKVRYQSRKK 444

Query:   160 VALRMQRNKGQF 171
             +A +  R KGQF
Sbjct:   445 LAEQRPRVKGQF 456

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0007623 "circadian rhythm" evidence=IMP;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009266 "response to temperature stimulus" evidence=IGI

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0003677 "DNA binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2083388 GATA15 "GATA transcription factor 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 7.8e-06, P = 7.8e-06
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query:   195 SPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGL 230
             S  + SC  CG S   TP+ R GP+GP+SLCNACG+
Sbjct:    37 SNEKKSCAICGTSK--TPLWRGGPAGPKSLCNACGI 70

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

UNIPROTKB|G4N7Q5 MGG_03538 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 122 (48.0 bits), Expect = 9.2e-06, Sum P(2) = 9.2e-06
 Identities = 22/37 (59%), Positives = 27/37 (72%)

Query:   201 CTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVG 237
             C +C   ++STP  RRGPSG R LCN+CGL WA +VG
Sbjct:   961 CANC--HTRSTPEWRRGPSGQRDLCNSCGLRWAKQVG 995

GO:0043581 "mycelium development" evidence=IEP

TAIR|locus:2151206 PRR7 "pseudo-response regulator 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 25/41 (60%), Positives = 32/41 (78%)

Query:   131 QRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQF 171
             QR A+L +FRQKRKERCF KKVRY  R+++A +  R +GQF
Sbjct:   668 QREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQF 708

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0007623 "circadian rhythm" evidence=IMP;TAS

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0009266 "response to temperature stimulus" evidence=IGI

GO:0003677 "DNA binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009639 "response to red or far red light" evidence=RCA

GO:0042752 "regulation of circadian rhythm" evidence=RCA

GO:0048574 "long-day photoperiodism, flowering" evidence=RCA

TAIR|locus:2055589 GATA2 "GATA transcription factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 21/52 (40%), Positives = 28/52 (53%)

Query:   179 GGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGL 230
             GG  G   +      +      CTHC  +S+ TP  R GP GP++LCNACG+
Sbjct:   159 GGGGGRHQSSSSETTEGGGMRRCTHC--ASEKTPQWRTGPLGPKTLCNACGV 208

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

ASPGD|ASPL0000038700 lreA [Emericella nidulans (taxid:162425)]

 Score = 126 (49.4 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 24/45 (53%), Positives = 30/45 (66%)

Query:   192 QDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKV 236
             Q  +  E SC  CG  +++TP  RRGPSG R LCN+CGL WA +V
Sbjct:   779 QSAAAMEKSCAMCG--TRTTPEWRRGPSGNRDLCNSCGLRWAKQV 821

GO:0075308 "negative regulation of conidium formation" evidence=IMP

GO:0043941 "positive regulation of sexual sporulation resulting in formation of a cellular spore" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0010914 "positive regulation of sterigmatocystin biosynthetic process" evidence=IMP

GO:0071333 "cellular response to glucose stimulus" evidence=IMP

GO:0033244 "regulation of penicillin metabolic process" evidence=IMP

GO:0071483 "cellular response to blue light" evidence=IMP

GO:0048315 "conidium formation" evidence=IMP

GO:0043935 "sexual sporulation resulting in formation of a cellular spore" evidence=IMP

GO:0045461 "sterigmatocystin biosynthetic process" evidence=IMP

GO:0007165 "signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2155919 GATA16 "GATA transcription factor 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 102 (41.0 bits), Expect = 2.0e-05, P = 2.0e-05
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query:   200 SCTHCGISSKSTPMMRRGPSGPRSLCNACGL 230
             +C  CG S   TP+ R GP GP+SLCNACG+
Sbjct:    37 TCADCGTSK--TPLWRGGPVGPKSLCNACGI 65

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LRH6	GAT25_ARATH	No assigned EC number	0.528	0.9789	0.7540	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00021024 hypothetical protein (291 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	238
pfam06203	45	pfam06203, CCT, CCT motif	4e-19
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	8e-13
pfam00320	36	pfam00320, GATA, GATA zinc finger	1e-11
pfam06200	36	pfam06200, tify, tify domain	3e-11
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	1e-10
smart00979	36	smart00979, TIFY, This short possible domain is fo	2e-10
pfam09425	27	pfam09425, CCT_2, Divergent CCT motif	0.003

>gnl|CDD|203407 pfam06203, CCT, CCT motif

 Score = 77.3 bits (191), Expect = 4e-19
 Identities = 21/44 (47%), Positives = 29/44 (65%)

Query: 132 RAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAK 175
           R A+L R+++KRK R FDKK+RY+ R+ VA    R KG+F    
Sbjct: 1   REAALLRYKEKRKTRKFDKKIRYASRKAVAESRPRVKGRFVKQS 44

This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif. Toc1 mutants have been identified in this region. Length = 45

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 60.9 bits (148), Expect = 8e-13
 Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 2/40 (5%)

Query: 196 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANK 235
            S  SC++CG  +  TP+ RRGPSG ++LCNACGL++   
Sbjct: 1   GSGRSCSNCG--TTETPLWRRGPSGNKTLCNACGLYYKKH 38

Length = 52

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 57.7 bits (140), Expect = 1e-11
 Identities = 18/35 (51%), Positives = 25/35 (71%), Gaps = 2/35 (5%)

Query: 201 CTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANK 235
           C++CG  +  TP+ RRGP G R+LCNACGL++   
Sbjct: 1   CSNCG--TTKTPLWRRGPDGNRTLCNACGLYYRKH 33

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

>gnl|CDD|203405 pfam06200, tify, tify domain

 Score = 56.3 bits (137), Expect = 3e-11
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 67  SNSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGG 100
           + S+QLT+ + GQV VFD V P+K Q ++ L   
Sbjct: 3   AESAQLTIFYGGQVCVFDDVPPEKAQEIMRLASR 36

This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs. Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. Length = 36

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 55.1 bits (133), Expect = 1e-10
 Identities = 19/36 (52%), Positives = 27/36 (75%), Gaps = 2/36 (5%)

Query: 200 SCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANK 235
           +C++CG  + +TP+ RRGPSG  +LCNACGL+W   
Sbjct: 1   ACSNCG--TTTTPLWRRGPSGGSTLCNACGLYWKKH 34

Length = 54

>gnl|CDD|198047 smart00979, TIFY, This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs

 Score = 54.2 bits (131), Expect = 2e-10
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 67  SNSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGG 100
             S QLT+ + G V VFD V P+K Q ++ L G 
Sbjct: 3   EGSQQLTIFYGGSVCVFDDVPPEKAQEIMSLAGN 36

Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. Length = 36

>gnl|CDD|117965 pfam09425, CCT_2, Divergent CCT motif

 Score = 34.1 bits (79), Expect = 0.003
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 131 QRAASLDRFRQKRKERCFDKKVRYSV 156
            R ASL RF +KRK+R       Y V
Sbjct: 3   ARKASLQRFLEKRKDRLVSAA-PYQV 27

This short motif is found in a number of plant proteins. It appears to be related to the N-terminal half of the CCT motif. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif. Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	238
PF06200	36	tify: tify domain; InterPro: IPR010399 The tify do	99.71
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.55
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.55
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.53
PF06203	45	CCT: CCT motif; InterPro: IPR010402 The CCT (CONST	99.11
PF09425	27	CCT_2: Divergent CCT motif; InterPro: IPR018467 Th	98.8
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	98.57
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	98.01
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	93.76
PF14803	34	Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.	81.07
PF01783	56	Ribosomal_L32p: Ribosomal L32p protein family; Int	80.69

>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants)

Probab=99.71  E-value=1.4e-17  Score=107.58  Aligned_cols=35  Identities=46%  Similarity=0.731  Sum_probs=32.5

Q ss_pred             CCCCcceeEEeCCEEEEEcCCChHHHHHHHHHhcC
Q 026465           66 LSNSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGG  100 (238)
Q Consensus        66 ~~~~~qLTIfY~G~V~Vfd~vp~dKaqaim~la~~  100 (238)
                      .+.++||||||+|+|+|||+||+|||++||+||+.
T Consensus         2 ~~~~~qLTIfY~G~V~Vfd~v~~~Ka~~im~lA~r   36 (36)
T PF06200_consen    2 SPETAQLTIFYGGQVCVFDDVPPDKAQEIMLLASR   36 (36)
T ss_pred             CCCCCcEEEEECCEEEEeCCCCHHHHHHHHHHhcC
Confidence            46789999999999999999999999999999963

It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.55  E-value=8.3e-16  Score=99.38  Aligned_cols=35  Identities=51%  Similarity=1.187  Sum_probs=28.7

Q ss_pred             ccccccccCCCCccccCCCCCcccchhhhhhhhhhcC
Q 026465          201 CTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVG  237 (238)
Q Consensus       201 C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g~  237 (238)
                      |+||+++  +||+||+||.|..+|||||||+|+++|+
T Consensus         1 C~~C~tt--~t~~WR~~~~g~~~LCn~Cg~~~kk~~~   35 (36)
T PF00320_consen    1 CSNCGTT--ETPQWRRGPNGNRTLCNACGLYYKKYGK   35 (36)
T ss_dssp             -TTT--S--T-SSEEEETTSEE-EEHHHHHHHHHHSS
T ss_pred             CcCCcCC--CCchhhcCCCCCCHHHHHHHHHHHHhCC
Confidence            8999997  8999999999988899999999999986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.55  E-value=1.7e-15  Score=106.24  Aligned_cols=36  Identities=53%  Similarity=1.270  Sum_probs=33.9

Q ss_pred             cccccccccCCCCccccCCCCCcccchhhhhhhhhhcC
Q 026465          200 SCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVG  237 (238)
Q Consensus       200 ~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g~  237 (238)
                      .|+||+++  .||+||+||.|..+|||||||||+++|.
T Consensus         1 ~C~~C~~~--~Tp~WR~g~~~~~~LCNaCgl~~~k~~~   36 (54)
T cd00202           1 ACSNCGTT--TTPLWRRGPSGGSTLCNACGLYWKKHGV   36 (54)
T ss_pred             CCCCCCCC--CCcccccCCCCcchHHHHHHHHHHhcCC
Confidence            59999997  9999999999889999999999999985

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.53  E-value=3.1e-15  Score=104.13  Aligned_cols=39  Identities=51%  Similarity=1.206  Sum_probs=36.1

Q ss_pred             cccccccccccCCCCccccCCCCCcccchhhhhhhhhhcCC
Q 026465          198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVGV  238 (238)
Q Consensus       198 ~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g~l  238 (238)
                      ...|+||+++  .||+||+||.|..+|||||||+|++++.+
T Consensus         3 ~~~C~~C~~~--~T~~WR~g~~g~~~LCnaCgl~~~k~~~~   41 (52)
T smart00401        3 GRSCSNCGTT--ETPLWRRGPSGNKTLCNACGLYYKKHGGL   41 (52)
T ss_pred             CCCcCCCCCC--CCCccccCCCCCCcEeecccHHHHHcCCC
Confidence            5689999997  99999999999999999999999999853

>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction

Probab=99.11  E-value=4.9e-11  Score=80.75  Aligned_cols=44  Identities=45%  Similarity=0.762  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHhhhhhhcccccchhhhHHHHHhhhcccccccccc
Q 026465          132 RAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAK  175 (238)
Q Consensus       132 RkaSL~RF~eKRK~R~~~kk~~Y~~rke~a~rm~Rekgqf~~~K  175 (238)
                      |.++|+||+|||+.|+|.++|+|++|+.+|+.++|.+|+|.+..
T Consensus         1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~   44 (45)
T PF06203_consen    1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKS   44 (45)
T ss_pred             CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCC
Confidence            67899999999999999999999999999999999999999753

The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding

>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1

Probab=98.80  E-value=1.9e-09  Score=65.38  Aligned_cols=25  Identities=48%  Similarity=0.612  Sum_probs=10.0

Q ss_pred             hhHHHHHHHHHHhhhhhhcccccchh
Q 026465          130 PQRAASLDRFRQKRKERCFDKKVRYS  155 (238)
Q Consensus       130 paRkaSL~RF~eKRK~R~~~kk~~Y~  155 (238)
                      .+|++||+||+||||+|+++ +.||.
T Consensus         2 ~aRK~SLqRFLeKRK~R~~~-~~PY~   26 (27)
T PF09425_consen    2 IARKASLQRFLEKRKDRLAA-KSPYQ   26 (27)
T ss_dssp             ----HHHHHHHHHH------------
T ss_pred             chHHHHHHHHHHHHHHhhcc-CCCCC
Confidence            48999999999999999987 88985

The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=98.57  E-value=2.3e-08  Score=85.78  Aligned_cols=37  Identities=51%  Similarity=1.134  Sum_probs=34.9

Q ss_pred             cccccccccccCCCCccccCCCCCcccchhhhhhhhhhc
Q 026465          198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKV  236 (238)
Q Consensus       198 ~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g  236 (238)
                      ...|.+|+++  .||+||++|.|+..|||||||+|++++
T Consensus       199 ~~~c~~~~~~--~t~~~r~~~~g~~~~cnacgl~~k~~~  235 (340)
T KOG1601|consen  199 LRQCSNCGTT--KTPLWRRGPEGPKSLCNACGLRYKKGG  235 (340)
T ss_pred             CcccCCCCCC--CCcceecCCCCCccccccchhhhhhcC
Confidence            5899999996  999999999999999999999999985

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=98.01  E-value=1.6e-06  Score=84.66  Aligned_cols=39  Identities=38%  Similarity=0.784  Sum_probs=34.5

Q ss_pred             ccccccccccccCCCCccccCCCC----CcccchhhhhhhhhhcC
Q 026465          197 SETSCTHCGISSKSTPMMRRGPSG----PRSLCNACGLFWANKVG  237 (238)
Q Consensus       197 ~~~~C~~C~~t~~~Tp~wR~gp~G----~~~lCNaCGl~~~~~g~  237 (238)
                      ...+|.||.++  .||+|||...+    .-.|||||||+|+.||+
T Consensus       157 ~~~vc~Nc~t~--stPlwrR~~~~~s~~~n~lcnaCgl~~klhg~  199 (498)
T COG5641         157 QPHVCSNCKTT--STPLWRRASSESSLPGNNLCNACGLYLKLHGS  199 (498)
T ss_pred             ccchhcccccc--CCccccccccccccCCccccccccccccccCC
Confidence            34499999997  99999999993    37999999999999985

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=93.76  E-value=0.059  Score=52.82  Aligned_cols=39  Identities=21%  Similarity=0.553  Sum_probs=31.9

Q ss_pred             cccccccccccCCCCcc--ccCCCCCcccchhhhhhhhhhcCC
Q 026465          198 ETSCTHCGISSKSTPMM--RRGPSGPRSLCNACGLFWANKVGV  238 (238)
Q Consensus       198 ~~~C~~C~~t~~~Tp~w--R~gp~G~~~lCNaCGl~~~~~g~l  238 (238)
                      .+.|-+|+++  ..-+|  +-+|.-...||-.|.+||+|.|-|
T Consensus       386 g~~CEsC~tt--qs~qWYsWGppnmqcrLCasCWiyWKKygGL  426 (693)
T KOG3554|consen  386 GRACESCYTT--QSLQWYSWGPPNMQCRLCASCWIYWKKYGGL  426 (693)
T ss_pred             CCcccccccc--cccceeccCCCCccchhhHHHHHHHHHhcCc
Confidence            7799999997  66676  445555568999999999999865

>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C

Probab=81.07  E-value=0.46  Score=30.34  Aligned_cols=30  Identities=30%  Similarity=0.708  Sum_probs=14.7

Q ss_pred             ccccccccccCCCCccccCCCCCcccchhhhh
Q 026465          199 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGL  230 (238)
Q Consensus       199 ~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl  230 (238)
                      +.|.+||.+  .+..-=.|.+-.+..|.+||-
T Consensus         1 kfC~~CG~~--l~~~ip~gd~r~R~vC~~Cg~   30 (34)
T PF14803_consen    1 KFCPQCGGP--LERRIPEGDDRERLVCPACGF   30 (34)
T ss_dssp             -B-TTT--B---EEE--TT-SS-EEEETTTTE
T ss_pred             CccccccCh--hhhhcCCCCCccceECCCCCC
Confidence            369999984  222222445556799999984

>PF01783 Ribosomal_L32p: Ribosomal L32p protein family; InterPro: IPR002677 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=80.69  E-value=0.62  Score=32.66  Aligned_cols=29  Identities=24%  Similarity=0.795  Sum_probs=21.3

Q ss_pred             ccccccccccccCCCCccccCCCCCcccchhhhhhhhhhcC
Q 026465          197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVG  237 (238)
Q Consensus       197 ~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g~  237 (238)
                      ....|.+||..           .-+..+|..|| ||+.+-+
T Consensus        25 ~l~~c~~cg~~-----------~~~H~vc~~cG-~y~~r~v   53 (56)
T PF01783_consen   25 NLVKCPNCGEP-----------KLPHRVCPSCG-YYKGRQV   53 (56)
T ss_dssp             SEEESSSSSSE-----------ESTTSBCTTTB-BSSSSSS
T ss_pred             ceeeeccCCCE-----------ecccEeeCCCC-eECCEEE
Confidence            56799999984           33468999999 6655443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L32p is part of the 50S ribosomal subunit. This family is found in both prokaryotes and eukaryotes. Ribosomal protein L32 of yeast binds to and regulates the splicing and the translation of the transcript of its own gene [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit; PDB: 3PYT_2 3F1F_5 3PYV_2 3D5B_5 3MRZ_2 3D5D_5 3F1H_5 1VSP_Y 3PYR_2 3MS1_2 ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	238
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	1e-10
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	1e-08
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	6e-08
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	4e-06
3dfx_A	63	Trans-acting T-cell-specific transcription factor	6e-06

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 54.9 bits (132), Expect = 1e-10
 Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 2/42 (4%)

Query: 191 GQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFW 232
           G   +     C++C      T   R   S     CNAC ++ 
Sbjct: 1   GSHMNKKSFQCSNCS--VTETIRWRNIRSKEGIQCNACFIYQ 40

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 48.9 bits (117), Expect = 1e-08
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 196 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFW 232
                C +CG  + +TP+ RR  +G   LCNACGL+ 
Sbjct: 2   SEARECVNCG--ATATPLWRRDRTG-HYLCNACGLYH 35

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 46.7 bits (111), Expect = 6e-08
 Identities = 18/34 (52%), Positives = 25/34 (73%), Gaps = 3/34 (8%)

Query: 199 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFW 232
           T+CT+C   +++TP+ RR P G + LCNACGLF 
Sbjct: 2   TTCTNCF--TQTTPLWRRNPEG-QPLCNACGLFL 32

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 42.4 bits (99), Expect = 4e-06
 Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 3/37 (8%)

Query: 199 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANK 235
           T+CT+C   +++TP+ RR P G + LCNACGLF    
Sbjct: 10  TTCTNCF--TQTTPLWRRNPEG-QPLCNACGLFLKLH 43

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 42.0 bits (98), Expect = 6e-06
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)

Query: 195 SPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFW 232
             + TSC +C   + +T + RR  +G   +CNACGL++
Sbjct: 4   RRAGTSCANCQ--TTTTTLWRRNANG-DPVCNACGLYY 38

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	238
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.68
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.67
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.64
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.6
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.57
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.42
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.25
3ogl_Q	21	JAZ1 incomplete degron peptide; leucine-rich repea	98.67
3ogk_Q	22	JAZ1 incomplete degron peptide; leucine rich repea	98.66

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.68  E-value=9.4e-18  Score=111.65  Aligned_cols=37  Identities=51%  Similarity=0.963  Sum_probs=34.6

Q ss_pred             ccccccccccCCCCccccCCCCCcccchhhhhhhhhhcCC
Q 026465          199 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVGV  238 (238)
Q Consensus       199 ~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g~l  238 (238)
                      ..|++|+++  +||+||+||+|+ +|||||||+|++||++
T Consensus         2 ~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~   38 (43)
T 2vut_I            2 TTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVV   38 (43)
T ss_dssp             CCCSSSCCC--CCSCCEECTTSC-EECHHHHHHHHHHSSC
T ss_pred             CcCCccCCC--CCCccccCCCCC-cccHHHHHHHHHhCCC
Confidence            579999997  999999999997 9999999999999964

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.67  E-value=2.7e-17  Score=110.90  Aligned_cols=39  Identities=38%  Similarity=0.839  Sum_probs=35.7

Q ss_pred             ccccccccccccCCCCccccCCCCCcccchhhhhhhhhhcCC
Q 026465          197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVGV  238 (238)
Q Consensus       197 ~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g~l  238 (238)
                      ....|+||+++  +||+||+||+|+ +|||||||||++||+.
T Consensus         3 ~~~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~   41 (46)
T 1gnf_A            3 EARECVNCGAT--ATPLWRRDRTGH-YLCNACGLYHKMNGQN   41 (46)
T ss_dssp             CSCCCTTTCCC--CCSSCBCCTTCC-CBCSHHHHHHHHTCSC
T ss_pred             CCCCCCCcCCC--CCCcCccCCCCC-ccchHHHHHHHHcCCC
Confidence            35689999997  999999999997 9999999999999963

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.64  E-value=8e-17  Score=115.28  Aligned_cols=39  Identities=36%  Similarity=0.797  Sum_probs=36.0

Q ss_pred             cccccccccccccCCCCccccCCCCCcccchhhhhhhhhhcC
Q 026465          196 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVG  237 (238)
Q Consensus       196 ~~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g~  237 (238)
                      .....|+||+++  .||+||+||+|+ +|||||||+|+++|+
T Consensus         5 ~~~~~C~~C~tt--~Tp~WR~gp~G~-~LCNACGl~~~~~~~   43 (63)
T 3dfx_A            5 RAGTSCANCQTT--TTTLWRRNANGD-PVCNACGLYYKLHNI   43 (63)
T ss_dssp             CTTCCCTTTCCS--CCSSCCCCTTSC-CCCHHHHHHHHHHSS
T ss_pred             CCCCcCCCcCCC--CCCccCCCCCCC-chhhHHHHHHHHcCC
Confidence            456789999997  999999999997 999999999999985

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.60  E-value=2e-16  Score=114.22  Aligned_cols=39  Identities=49%  Similarity=0.913  Sum_probs=36.0

Q ss_pred             ccccccccccccCCCCccccCCCCCcccchhhhhhhhhhcCC
Q 026465          197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVGV  238 (238)
Q Consensus       197 ~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g~l  238 (238)
                      ....|+||+++  +||+||+||+|. +|||||||||++||++
T Consensus         8 ~~~~C~~C~t~--~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~   46 (66)
T 4gat_A            8 GPTTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVV   46 (66)
T ss_dssp             SSCCCTTTCCC--CCSSCEEETTTE-EECHHHHHHHHHHCSC
T ss_pred             CCCCCCCCCCC--CCCcCCcCCCCC-CccHHHHHHHHHcCCC
Confidence            46799999997  999999999996 9999999999999863

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.57  E-value=6.4e-16  Score=113.00  Aligned_cols=40  Identities=23%  Similarity=0.381  Sum_probs=33.3

Q ss_pred             cccccccccccccCCCCccccCCCCCcccchhhhhhhhhhcC
Q 026465          196 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVG  237 (238)
Q Consensus       196 ~~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g~  237 (238)
                      .....|+||+++  +||+||+||.+..+|||||||||+++|+
T Consensus         6 ~~~~~C~nC~tt--~Tp~WRrg~~~~g~LCNACGl~~~~~~~   45 (71)
T 2kae_A            6 KKSFQCSNCSVT--ETIRWRNIRSKEGIQCNACFIYQRKYNK   45 (71)
T ss_dssp             --CCCCSSSCCS--CCSSCCCCSSSSCCCSSHHHHHHHHHHS
T ss_pred             CCCCcCCccCCC--CCCccccCCCCCCccchHHHHHHHHhCC
Confidence            356899999997  9999999544444999999999999986

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.42  E-value=5.8e-14  Score=111.40  Aligned_cols=38  Identities=37%  Similarity=0.830  Sum_probs=35.5

Q ss_pred             ccccccccccccCCCCccccCCCCCcccchhhhhhhhhhcC
Q 026465          197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVG  237 (238)
Q Consensus       197 ~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g~  237 (238)
                      ....|+||+++  .||+||+||+| ++|||||||||++||+
T Consensus        58 ~~~~C~~C~t~--~tp~WRr~~~g-~~lCNaCgl~~~~~~~   95 (115)
T 4hc9_A           58 AGTSCANCQTT--TTTLWRRNANG-DPVCNACGLYYKLHNI   95 (115)
T ss_dssp             TTCCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSS
T ss_pred             ccccCCCcCCC--CcceeEECCCC-CCcchHHHHHHHHhCC
Confidence            35799999997  99999999999 8999999999999986

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.25  E-value=2e-12  Score=102.56  Aligned_cols=38  Identities=42%  Similarity=0.878  Sum_probs=34.0

Q ss_pred             ccccccccccccCCCCccccCCCCCcccchhhhhhhhhhcC
Q 026465          197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVG  237 (238)
Q Consensus       197 ~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g~  237 (238)
                      ..+.|.||+++  +||+||+||.| .+|||||||||+.+|.
T Consensus         4 ~~~~C~~Cg~~--~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~   41 (115)
T 4hc9_A            4 MGRECVNCGAT--STPLWRRDGTG-HYLCNACGLYHKMNGQ   41 (115)
T ss_dssp             --CCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCc--cCCcceECCCC-CCcCcchhhhhhhccc
Confidence            46799999997  99999999999 6999999999999885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	238
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	9e-10
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	9e-10
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	3e-07

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.5 bits (121), Expect = 9e-10
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 3/33 (9%)

Query: 200 SCTHCGISSKSTPMMRRGPSGPRSLCNACGLFW 232
            C +CG  + +TP+ RR  +G   LCNACGL+ 
Sbjct: 4   ECVNCG--ATATPLWRRDRTG-HYLCNACGLYH 33

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 50.6 bits (121), Expect = 9e-10
 Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 3/37 (8%)

Query: 199 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANK 235
           T+CT+C   +++TP+ RR P G + LCNACGLF    
Sbjct: 1   TTCTNCF--TQTTPLWRRNPEG-QPLCNACGLFLKLH 34

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.2 bits (104), Expect = 3e-07
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 199 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANK 235
           T C++C   + +T + RR P G   +CNACGL++   
Sbjct: 5   TVCSNCQ--TSTTTLWRRSPMG-DPVCNACGLYYKLH 38

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	238
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.75
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.73
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.64

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=1.4e-19  Score=115.92  Aligned_cols=37  Identities=41%  Similarity=0.917  Sum_probs=34.6

Q ss_pred             cccccccccccCCCCccccCCCCCcccchhhhhhhhhhcC
Q 026465          198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVG  237 (238)
Q Consensus       198 ~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g~  237 (238)
                      .+.|+||+++  +||+||+||+| ++|||||||||++||+
T Consensus         2 ~r~C~~Cgtt--~Tp~WR~gp~G-~~LCNACGl~~r~~G~   38 (39)
T d1y0ja1           2 ARECVNCGAT--ATPLWRRDRTG-HYLCNACGLYHKMNGQ   38 (39)
T ss_dssp             CCCCSSSCCC--CCSCCEECTTS-CEECSSHHHHHHHSCC
T ss_pred             cCCCCCCCCC--CCcccccCCCC-CEeeHHhHHHHHHhCC
Confidence            4689999997  99999999999 6999999999999996

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.73  E-value=5.2e-19  Score=115.00  Aligned_cols=36  Identities=50%  Similarity=0.983  Sum_probs=33.8

Q ss_pred             cccccccccCCCCccccCCCCCcccchhhhhhhhhhcCC
Q 026465          200 SCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVGV  238 (238)
Q Consensus       200 ~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g~l  238 (238)
                      .|+||+++  +||+||+||.| ++|||||||||++||+.
T Consensus         2 ~C~nC~tt--~Tp~WRr~~~G-~~lCNACGl~~k~~g~~   37 (42)
T d2vuti1           2 TCTNCFTQ--TTPLWRRNPEG-QPLCNACGLFLKLHGVV   37 (42)
T ss_dssp             CCSSSCCC--CCSCCEECTTS-CEECHHHHHHHHHHSSC
T ss_pred             cCCCCCCC--CCccceeCCCC-CCchhhhhHHHHHcCCC
Confidence            69999997  99999999999 79999999999999963

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.64  E-value=2.7e-17  Score=116.93  Aligned_cols=38  Identities=39%  Similarity=0.876  Sum_probs=34.9

Q ss_pred             ccccccccccccCCCCccccCCCCCcccchhhhhhhhhhcC
Q 026465          197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKVG  237 (238)
Q Consensus       197 ~~~~C~~C~~t~~~Tp~wR~gp~G~~~lCNaCGl~~~~~g~  237 (238)
                      ....|+||+++  +||+||+||.| .+|||||||||+++|+
T Consensus         3 ~g~~C~nCgt~--~Tp~WRr~~~G-~~lCNACGl~~~~~~~   40 (66)
T d3gata_           3 AGTVCSNCQTS--TTTLWRRSPMG-DPVCNACGLYYKLHQV   40 (66)
T ss_dssp             TTCCCTTTCCC--CCSSEEECTTS-CEEEHHHHHHHHHHCS
T ss_pred             CCCCCCCCCCC--CCcccccCCCC-CcccchhHHHHHHhCC
Confidence            35689999997  99999999999 7999999999999985