Citrus Sinensis ID: 026488

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
MDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLANKLHDKS
cccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccHHccHHHHHcccccccccHHHHHHHHHHccccccccHHHcccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHcccccccccHHHccccccHHHHHHHHccHHHHHHHHHHHHHHHccccccccccccccccccccccccccc
cccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccEccEEcccccHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHccEEEHHHcHHHccccccccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHccccccHHHHHHHHccccHHHHHHHHHcHHHHHHHHHHHHHHHcccccEEHHHcEccccccccccccccc
mdrsfgmrNFRYIENIKEAVerecpgvvscaDILVLSGRDgvvalggpyiplktgrrdgrKSRAEILEQylpdhndsMSVVLERFAAIGIDAPGLVALLgshsvgrthcVKLVHrlypevdpalnpdhvphmlhkcpdaipdpkavqyvrndrgtpmvldnnyyrnildnkglmmvdhqlatdkrtrpyvKKMAKSQDYFFKEFSRAITLLsennpltgtkgEIRKVCNLANKLHDKS
mdrsfgmrNFRYIENIKEAVERECPGVVSCADILVLSGRdgvvalggpyiplktgrrdgrkSRAEILEqylpdhndSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNdrgtpmvldnNYYRNILDNKGLMMVDHQLatdkrtrpyvKKMAKSQDYFFKEFSRAITLLsennpltgtkgeiRKVCNLANKLHDKS
MDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLANKLHDKS
******MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT***********ILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNL********
*DRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCP***P*PKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCN**NK*****
MDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLANKLHDKS
*****GMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIP***AVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCN*********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLANKLHDKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query238 2.2.26 [Sep-21-2011]
Q9SB81330 Peroxidase 42 OS=Arabidop yes no 0.983 0.709 0.854 1e-120
Q42580327 Peroxidase 21 OS=Arabidop no no 0.966 0.703 0.584 1e-77
Q9FLC0324 Peroxidase 52 OS=Arabidop no no 0.932 0.685 0.368 2e-39
Q9FL16328 Peroxidase 63 OS=Arabidop no no 0.928 0.673 0.367 1e-38
Q9SD46344 Peroxidase 36 OS=Arabidop no no 0.941 0.651 0.365 9e-38
Q9FJZ9336 Peroxidase 72 OS=Arabidop no no 0.932 0.660 0.359 9e-38
Q9SK52329 Peroxidase 18 OS=Arabidop no no 0.928 0.671 0.369 1e-37
P00434296 Peroxidase P7 OS=Brassica N/A no 0.932 0.75 0.36 2e-37
O23609326 Peroxidase 41 OS=Arabidop no no 0.941 0.687 0.376 5e-37
Q9LHA7316 Peroxidase 31 OS=Arabidop no no 0.924 0.696 0.381 6e-37
>sp|Q9SB81|PER42_ARATH Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2 Back     alignment and function desciption
 Score =  430 bits (1106), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 200/234 (85%), Positives = 219/234 (93%)

Query: 2   DRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRK 61
           DRSFG+RNFRYIE IKEA+ERECPGVVSC+DILVLS R+G+ A+GGPYIPLKTGRRDG K
Sbjct: 97  DRSFGLRNFRYIEEIKEALERECPGVVSCSDILVLSAREGIEAVGGPYIPLKTGRRDGLK 156

Query: 62  SRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVD 121
           SR ++LE YLPDHN+S+SVVLE+F +IGID PGLVALLGSHSVGRTHCVKLVHRLYPEVD
Sbjct: 157 SRTDMLESYLPDHNESISVVLEKFKSIGIDTPGLVALLGSHSVGRTHCVKLVHRLYPEVD 216

Query: 122 PALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLA 181
           P+LNPDHVPHMLHKCPD+IPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGL++VDHQLA
Sbjct: 217 PSLNPDHVPHMLHKCPDSIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLLLVDHQLA 276

Query: 182 TDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLANKLH 235
            DKRTRP VKKMAK Q YFFKEF+RAI +LSENNPLTG+KGEIRK CNLANK H
Sbjct: 277 HDKRTRPIVKKMAKDQAYFFKEFTRAIQILSENNPLTGSKGEIRKQCNLANKNH 330
Might function as heat shock-like defense protein.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 7
>sp|Q42580|PER21_ARATH Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=1 SV=1 Back     alignment and function description
>sp|Q9FLC0|PER52_ARATH Peroxidase 52 OS=Arabidopsis thaliana GN=PER52 PE=2 SV=1 Back     alignment and function description
>sp|Q9FL16|PER63_ARATH Peroxidase 63 OS=Arabidopsis thaliana GN=PER63 PE=2 SV=1 Back     alignment and function description
>sp|Q9SD46|PER36_ARATH Peroxidase 36 OS=Arabidopsis thaliana GN=PER36 PE=2 SV=2 Back     alignment and function description
>sp|Q9FJZ9|PER72_ARATH Peroxidase 72 OS=Arabidopsis thaliana GN=PER72 PE=1 SV=1 Back     alignment and function description
>sp|Q9SK52|PER18_ARATH Peroxidase 18 OS=Arabidopsis thaliana GN=PER18 PE=2 SV=1 Back     alignment and function description
>sp|P00434|PERP7_BRARA Peroxidase P7 OS=Brassica rapa PE=1 SV=3 Back     alignment and function description
>sp|O23609|PER41_ARATH Peroxidase 41 OS=Arabidopsis thaliana GN=PER41 PE=3 SV=1 Back     alignment and function description
>sp|Q9LHA7|PER31_ARATH Peroxidase 31 OS=Arabidopsis thaliana GN=PER31 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query238
4927284326 secretory peroxidase [Nicotiana tabacum] 0.983 0.717 0.905 1e-125
251826416337 peroxidase [Camellia oleifera] 0.983 0.694 0.893 1e-125
428135690336 peroxidase 4 [Pyrus pyrifolia] 0.991 0.702 0.885 1e-124
402228004330 peroxidase [Fragaria x ananassa] 0.987 0.712 0.880 1e-124
167367332 peroxidase [Gossypium hirsutum] 0.983 0.704 0.884 1e-124
290760238332 peroxidase [Bruguiera gymnorhiza] 0.983 0.704 0.880 1e-123
307136213331 peroxidase [Cucumis melo subsp. melo] 0.983 0.706 0.884 1e-123
10697182331 secretory peroxidase [Avicennia marina] 0.983 0.706 0.893 1e-123
449454740331 PREDICTED: peroxidase 42-like [Cucumis s 0.983 0.706 0.884 1e-123
449516705331 PREDICTED: LOW QUALITY PROTEIN: peroxida 0.983 0.706 0.880 1e-122
>gi|4927284|gb|AAD33072.1|AF149251_1 secretory peroxidase [Nicotiana tabacum] Back     alignment and taxonomy information
 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/234 (90%), Positives = 227/234 (97%)

Query: 2   DRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRK 61
           DRSFGMRNFRYIE IKEAVERECPGVVSCADILVLSGRDG+VALGGPY+PLKTGRRDGRK
Sbjct: 93  DRSFGMRNFRYIETIKEAVERECPGVVSCADILVLSGRDGIVALGGPYVPLKTGRRDGRK 152

Query: 62  SRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVD 121
           SRA+ILEQ+LPDHN+SMSVVLERFA +GI+APG+VALLG+HSVGRTHCVKLVHRLYPEVD
Sbjct: 153 SRADILEQHLPDHNESMSVVLERFANVGINAPGVVALLGAHSVGRTHCVKLVHRLYPEVD 212

Query: 122 PALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLA 181
           P LNPDHVPHML KCPD IPDPKAVQYVRNDRGTPM LDNNYYRNIL+NKGLM+VDHQLA
Sbjct: 213 PQLNPDHVPHMLKKCPDPIPDPKAVQYVRNDRGTPMKLDNNYYRNILENKGLMLVDHQLA 272

Query: 182 TDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLANKLH 235
           TDKRT+PYVKKMAKSQDYFFKEF+RAIT+L+ENNPLTGTKGEIRK CNLANKLH
Sbjct: 273 TDKRTKPYVKKMAKSQDYFFKEFARAITILTENNPLTGTKGEIRKQCNLANKLH 326

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|251826416|gb|ACT21094.1| peroxidase [Camellia oleifera] Back     alignment and taxonomy information
>gi|428135690|gb|AFY97687.1| peroxidase 4 [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|402228004|gb|AFQ36035.1| peroxidase [Fragaria x ananassa] Back     alignment and taxonomy information
>gi|167367|gb|AAA99868.1| peroxidase [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|290760238|gb|ADD54644.1| peroxidase [Bruguiera gymnorhiza] Back     alignment and taxonomy information
>gi|307136213|gb|ADN34050.1| peroxidase [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|10697182|dbj|BAB16317.1| secretory peroxidase [Avicennia marina] Back     alignment and taxonomy information
>gi|449454740|ref|XP_004145112.1| PREDICTED: peroxidase 42-like [Cucumis sativus] gi|449470666|ref|XP_004153037.1| PREDICTED: peroxidase 42-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449516705|ref|XP_004165387.1| PREDICTED: LOW QUALITY PROTEIN: peroxidase 42-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query238
TAIR|locus:2141637330 PRXR1 [Arabidopsis thaliana (t 0.983 0.709 0.854 2.3e-110
TAIR|locus:2061794327 AT2G37130 [Arabidopsis thalian 0.966 0.703 0.584 5.3e-72
TAIR|locus:2173757328 AT5G40150 [Arabidopsis thalian 0.928 0.673 0.363 1.3e-36
TAIR|locus:2047380329 AT2G24800 [Arabidopsis thalian 0.928 0.671 0.378 2.7e-36
TAIR|locus:2153529324 PRX52 "peroxidase 52" [Arabido 0.932 0.685 0.368 7.2e-36
TAIR|locus:2080928344 AT3G50990 [Arabidopsis thalian 0.941 0.651 0.370 1.5e-35
TAIR|locus:2154925336 AT5G66390 [Arabidopsis thalian 0.932 0.660 0.359 1.5e-35
TAIR|locus:2129386326 AT4G17690 [Arabidopsis thalian 0.936 0.684 0.383 1.9e-35
TAIR|locus:2098308316 AT3G28200 [Arabidopsis thalian 0.924 0.696 0.376 5.1e-35
TAIR|locus:2115335331 AT4G36430 [Arabidopsis thalian 0.932 0.670 0.346 2.8e-34
TAIR|locus:2141637 PRXR1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1090 (388.8 bits), Expect = 2.3e-110, P = 2.3e-110
 Identities = 200/234 (85%), Positives = 219/234 (93%)

Query:     2 DRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRK 61
             DRSFG+RNFRYIE IKEA+ERECPGVVSC+DILVLS R+G+ A+GGPYIPLKTGRRDG K
Sbjct:    97 DRSFGLRNFRYIEEIKEALERECPGVVSCSDILVLSAREGIEAVGGPYIPLKTGRRDGLK 156

Query:    62 SRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVD 121
             SR ++LE YLPDHN+S+SVVLE+F +IGID PGLVALLGSHSVGRTHCVKLVHRLYPEVD
Sbjct:   157 SRTDMLESYLPDHNESISVVLEKFKSIGIDTPGLVALLGSHSVGRTHCVKLVHRLYPEVD 216

Query:   122 PALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLA 181
             P+LNPDHVPHMLHKCPD+IPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGL++VDHQLA
Sbjct:   217 PSLNPDHVPHMLHKCPDSIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLLLVDHQLA 276

Query:   182 TDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLANKLH 235
              DKRTRP VKKMAK Q YFFKEF+RAI +LSENNPLTG+KGEIRK CNLANK H
Sbjct:   277 HDKRTRPIVKKMAKDQAYFFKEFTRAIQILSENNPLTGSKGEIRKQCNLANKNH 330
GO:0004601 "peroxidase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0006979 "response to oxidative stress" evidence=IEA
GO:0020037 "heme binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0006833 "water transport" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0019761 "glucosinolate biosynthetic process" evidence=RCA
GO:0030003 "cellular cation homeostasis" evidence=RCA
GO:0070838 "divalent metal ion transport" evidence=RCA
TAIR|locus:2061794 AT2G37130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173757 AT5G40150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047380 AT2G24800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153529 PRX52 "peroxidase 52" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080928 AT3G50990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154925 AT5G66390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129386 AT4G17690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098308 AT3G28200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115335 AT4G36430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SB81PER42_ARATH1, ., 1, 1, ., 1, ., 70.85470.98310.7090yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.11.1.70.991
3rd Layer1.11.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00010753001
SubName- Full=Putative uncharacterized protein (Chromosome chr10 scaffold_282, whole genome shotgun sequence); (334 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00037462001
RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (427 aa)
     •  0.899
GSVIVG00036840001
SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (514 aa)
     •  0.899
GSVIVG00036664001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (357 aa)
     •  0.899
GSVIVG00032723001
RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (410 aa)
     •  0.899
GSVIVG00032463001
RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (450 aa)
     •  0.899
GSVIVG00027735001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (422 aa)
     •  0.899
GSVIVG00024993001
SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (481 aa)
     •  0.899
GSVIVG00024561001
SubName- Full=Putative uncharacterized protein (Chromosome chr6 scaffold_3, whole genome shotgu [...] (717 aa)
     •  0.899
GSVIVG00023211001
SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (710 aa)
     •  0.899
GSVIVG00018772001
RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (423 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query238
cd00693298 cd00693, secretory_peroxidase, Horseradish peroxid 1e-104
PLN03030324 PLN03030, PLN03030, cationic peroxidase; Provision 2e-46
pfam00141180 pfam00141, peroxidase, Peroxidase 1e-36
cd00314255 cd00314, plant_peroxidase_like, Heme-dependent per 1e-20
cd00691253 cd00691, ascorbate_peroxidase, Ascorbate peroxidas 9e-19
PLN02879251 PLN02879, PLN02879, L-ascorbate peroxidase 9e-11
PLN02608289 PLN02608, PLN02608, L-ascorbate peroxidase 8e-10
PLN02364250 PLN02364, PLN02364, L-ascorbate peroxidase 1 9e-10
cd00692328 cd00692, ligninase, Ligninase and other manganese- 1e-09
pfam00141180 pfam00141, peroxidase, Peroxidase 7e-06
COG0376 730 COG0376, KatG, Catalase (peroxidase I) [Inorganic 2e-04
cd08201264 cd08201, plant_peroxidase_like_1, Uncharacterized 3e-04
>gnl|CDD|173827 cd00693, secretory_peroxidase, Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information 
 Score =  302 bits (775), Expect = e-104
 Identities = 98/233 (42%), Positives = 132/233 (56%), Gaps = 9/233 (3%)

Query: 2   DRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRK 61
             +  +R F  I++IK A+E  CPGVVSCADIL L+ RD VV  GGP   +  GRRDGR 
Sbjct: 68  PPNLSLRGFDVIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRV 127

Query: 62  SRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYP--- 118
           S A      LP    S+S ++  FA+ G+    LVAL G+H++GR HC     RLY    
Sbjct: 128 SSAN-DVGNLPSPFFSVSQLISLFASKGLTVTDLVALSGAHTIGRAHCSSFSDRLYNFSG 186

Query: 119 --EVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMV 176
             + DP L+P +   +  KCP    D      V  D GTP   DN+YY+N+L  +GL+  
Sbjct: 187 TGDPDPTLDPAYAAQLRKKCPAGGDDD---TLVPLDPGTPNTFDNSYYKNLLAGRGLLTS 243

Query: 177 DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCN 229
           D  L +D RTR  V + A +QD FF++F+ A+  +     LTG++GEIRK C 
Sbjct: 244 DQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCR 296

Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites. Length = 298
>gnl|CDD|215545 PLN03030, PLN03030, cationic peroxidase; Provisional Back     alignment and domain information
>gnl|CDD|215745 pfam00141, peroxidase, Peroxidase Back     alignment and domain information
>gnl|CDD|173823 cd00314, plant_peroxidase_like, Heme-dependent peroxidases similar to plant peroxidases Back     alignment and domain information
>gnl|CDD|173825 cd00691, ascorbate_peroxidase, Ascorbate peroxidases and cytochrome C peroxidases Back     alignment and domain information
>gnl|CDD|178467 PLN02879, PLN02879, L-ascorbate peroxidase Back     alignment and domain information
>gnl|CDD|178218 PLN02608, PLN02608, L-ascorbate peroxidase Back     alignment and domain information
>gnl|CDD|166005 PLN02364, PLN02364, L-ascorbate peroxidase 1 Back     alignment and domain information
>gnl|CDD|173826 cd00692, ligninase, Ligninase and other manganese-dependent fungal peroxidases Back     alignment and domain information
>gnl|CDD|215745 pfam00141, peroxidase, Peroxidase Back     alignment and domain information
>gnl|CDD|223453 COG0376, KatG, Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|173829 cd08201, plant_peroxidase_like_1, Uncharacterized family of plant peroxidase-like proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 238
PLN03030324 cationic peroxidase; Provisional 100.0
cd00693298 secretory_peroxidase Horseradish peroxidase and re 100.0
PLN02608289 L-ascorbate peroxidase 100.0
PF00141230 peroxidase: Peroxidase; InterPro: IPR002016 Peroxi 100.0
cd00691253 ascorbate_peroxidase Ascorbate peroxidases and cyt 100.0
PLN02879251 L-ascorbate peroxidase 100.0
PLN02364250 L-ascorbate peroxidase 1 100.0
cd00692328 ligninase Ligninase and other manganese-dependent 100.0
cd00649409 catalase_peroxidase_1 N-terminal catalytic domain 100.0
TIGR00198 716 cat_per_HPI catalase/peroxidase HPI. Note that the 100.0
cd00314255 plant_peroxidase_like Heme-dependent peroxidases s 100.0
PRK15061 726 catalase/hydroperoxidase HPI(I); Provisional 100.0
cd08201264 plant_peroxidase_like_1 Uncharacterized family of 100.0
cd08200297 catalase_peroxidase_2 C-terminal non-catalytic dom 100.0
PRK15061726 catalase/hydroperoxidase HPI(I); Provisional 99.96
TIGR00198716 cat_per_HPI catalase/peroxidase HPI. Note that the 99.96
COG0376 730 KatG Catalase (peroxidase I) [Inorganic ion transp 99.96
COG0376730 KatG Catalase (peroxidase I) [Inorganic ion transp 99.37
PF1189580 DUF3415: Domain of unknown function (DUF3415); Int 85.19
>PLN03030 cationic peroxidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.9e-80  Score=556.80  Aligned_cols=228  Identities=37%  Similarity=0.646  Sum_probs=215.5

Q ss_pred             CCCCCCcchHHHHHHHHHHHHhhCCCcccHHHHHHHHhhhhHhhcCCCccccCCCCCCCCCchhhhhhccCCCCCCCHHH
Q 026488            1 MDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSV   80 (238)
Q Consensus         1 ~~~N~~l~g~~~i~~iK~~le~~c~~~VScADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~   80 (238)
                      +++|.+||||++|+.||+++|++||++|||||||+|||||||+++|||.|+|++||+|+++|...++. +||.|+.++++
T Consensus        87 a~~N~~l~Gf~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~  165 (324)
T PLN03030         87 ALPNLLLRGYDVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDV  165 (324)
T ss_pred             CCCCcCcchHHHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHH
Confidence            57899999999999999999999999999999999999999999999999999999999998877664 89999999999


Q ss_pred             HHHHHHhcCCCCCCceeeeccccccccccccccccccC------CCCCCCCcchhhHhhhcCCCCCCCCCCCccccCCCC
Q 026488           81 VLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYP------EVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRG  154 (238)
Q Consensus        81 l~~~F~~~Gl~~~elVaL~GaHtiG~~~~~~f~~rl~~------~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~~D~~  154 (238)
                      |++.|+++||+.+|||+||||||||++||.+|.+||||      .+||+|||.|+..|++.||.   .++....+++|+.
T Consensus       166 l~~~F~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~---~~~~~~~~~lD~~  242 (324)
T PLN03030        166 QKQKFAAKGLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQ---NGDGSRRIALDTG  242 (324)
T ss_pred             HHHHHHHcCCCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCC---CCCCCccccCCCC
Confidence            99999999999999999999999999999999999997      36999999999999999995   2222346789999


Q ss_pred             CCCccChHHHHHhhcccccchhhhhhhcCcCcHHHHHHHhhcH----HHHHHHHHHHHHHHhhCCCCCCCCCcccccccc
Q 026488          155 TPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQ----DYFFKEFSRAITLLSENNPLTGTKGEIRKVCNL  230 (238)
Q Consensus       155 tp~~fDn~Yy~~l~~~~gll~SD~~L~~d~~t~~~v~~yA~~~----~~F~~~Fa~Am~Km~~l~v~tG~~GeiR~~C~~  230 (238)
                      ||.+|||+||++|++++|+|+|||+|+.|++|+++|++||.|+    ++|+++|++||+||++|+|+||.+|||||+|+.
T Consensus       243 Tp~~FDn~Yy~nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~  322 (324)
T PLN03030        243 SSNRFDASFFSNLKNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSA  322 (324)
T ss_pred             CCcccccHHHHHHHhcCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccc
Confidence            9999999999999999999999999999999999999999875    599999999999999999999999999999999


Q ss_pred             cc
Q 026488          231 AN  232 (238)
Q Consensus       231 ~n  232 (238)
                      ||
T Consensus       323 vN  324 (324)
T PLN03030        323 IN  324 (324)
T ss_pred             cC
Confidence            98

>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information
>PLN02608 L-ascorbate peroxidase Back     alignment and domain information
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions Back     alignment and domain information
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases Back     alignment and domain information
>PLN02879 L-ascorbate peroxidase Back     alignment and domain information
>PLN02364 L-ascorbate peroxidase 1 Back     alignment and domain information
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases Back     alignment and domain information
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins Back     alignment and domain information
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query238
1pa2_A306 Arabidopsis Thaliana Peroxidase A2 Length = 306 4e-36
1bgp_A309 Crystal Structure Of Barley Grain Peroxidase 1 Leng 4e-35
4a5g_A308 Raphanus Sativus Anionic Peroxidase. Length = 308 2e-33
1sch_A294 Peanut Peroxidase Length = 294 5e-33
1qgj_A300 Arabidopsis Thaliana Peroxidase N Length = 300 4e-31
3hdl_A304 Crystal Structure Of Highly Glycosylated Peroxidase 8e-31
1w4w_A323 Ferric Horseradish Peroxidase C1a In Complex With F 2e-30
1gx2_A309 Recombinant Horseradish Peroxidase Phe209ser Comple 2e-30
1gw2_A308 Recombinant Horseradish Peroxidase C1a Thr171ser In 2e-30
1gwo_A309 Recombinant Horseradish Peroxidase C1a Ala170gln Le 3e-30
2ylj_A306 Horse Radish Peroxidase, Mutant S167y Length = 306 4e-30
1gwu_A309 Recombinant Horseradish Peroxidase C1a Ala140gly Le 4e-30
3atj_A309 Heme Ligand Mutant Of Recombinant Horseradish Perox 4e-30
4atj_A309 Distal Heme Pocket Mutant (H42e) Of Recombinant Hor 4e-30
1kzm_A308 Distal Heme Pocket Mutant (r38s/h42e) Of Recombinan 4e-30
2atj_A308 Recombinant Horseradish Peroxidase Complex With Ben 5e-30
6atj_A308 Recombinant Horseradish Peroxidase C Complex With F 5e-30
1atj_A306 Recombinant Horseradish Peroxidase C1a Length = 306 5e-30
1fhf_A304 The Structure Of Soybean Peroxidase Length = 304 2e-27
3riw_A271 The Crystal Structure Of Leishmania Major Peroxidas 6e-12
1jci_A294 Stabilization Of The Engineered Cation-Binding Loop 6e-12
3riv_A271 The Crystal Structure Of Leishmania Major Peroxidas 2e-11
4ged_A268 Crystal Structure Of The Leishmania Major Peroxidas 2e-11
1krj_A294 Engineering Calcium-Binding Site Into Cytochrome C 3e-11
1jdr_A294 Crystal Structure Of A Proximal Domain Potassium Bi 7e-11
1ccl_A291 Probing The Strength And Character Of An Asp-His-X 2e-10
1apx_A249 Crystal Structure Of Recombinant Ascorbate Peroxida 3e-10
3ccx_A294 Altering Substrate Specificity At The Heme Edge Of 3e-10
1cck_A291 Altering Substrate Specificity Of Cytochrome C Pero 4e-10
2v23_A296 Structure Of Cytochrome C Peroxidase Mutant N184r Y 5e-10
3m23_A291 Crystallographic And Single Crystal Spectral Analys 6e-10
2v2e_A294 Structure Of Isoniazid (Inh) Bound To Cytochrome C 6e-10
1cci_A294 How Flexible Are Proteins? Trapping Of A Flexible L 6e-10
1s6v_A294 Structure Of A Cytochrome C Peroxidase-Cytochrome C 7e-10
4a71_A296 Cytochrome C Peroxidase In Complex With Phenol Leng 7e-10
1cpg_A296 A Cation Binding Motif Stabilizes The Compound I Ra 7e-10
1sog_A294 Cyrstal Structure Of Cytochrome C Peroxidase Mutant 7e-10
2xil_A294 The Structure Of Cytochrome C Peroxidase Compound I 7e-10
2x07_A293 Cytochrome C Peroxidase: Engineered Ascorbate Bindi 8e-10
1cpd_A296 A Cation Binding Motif Stabilizes The Compound I Ra 8e-10
2aqd_A294 Cytochrome C Peroxidase (Ccp) In Complex With 2,5- 8e-10
1dj1_A291 Crystal Structure Of R48a Mutant Of Cytochrome C Pe 8e-10
3e2n_A287 Engineering Ascorbate Peroxidase Activity Into Cyto 9e-10
1bva_A294 Manganese Binding Mutant In Cytochrome C Peroxidase 9e-10
2gb8_A294 Solution Structure Of The Complex Between Yeast Iso 9e-10
4a7m_A296 Cytochrome C Peroxidase S81w Mutant Length = 296 9e-10
3r98_A293 Joint Neutron And X-Ray Structure Of Cytochrome C P 9e-10
2xj5_A294 The Structure Of Cytochrome C Peroxidase Compound I 9e-10
1mk8_A294 Crystal Structure Of A Mutant Cytochrome C Peroxida 9e-10
6ccp_A296 Effect Of Arginine-48 Replacement On The Reaction B 9e-10
5ccp_A296 Histidine 52 Is A Critical Residue For Rapid Format 9e-10
7ccp_A296 Effect Of Arginine-48 Replacement On The Reaction B 9e-10
2pcb_A296 Crystal Structure Of A Complex Between Electron Tra 9e-10
1cyf_A296 Identifying The Physiological Electron Transfer Sit 9e-10
1cca_A297 The Asp-His-Fe Triad Of Cytochrome C Peroxidase Con 1e-09
4ccx_A294 Altering Substrate Specificity At The Heme Edge Of 1e-09
4ccp_A296 X-Ray Structures Of Recombinant Yeast Cytochrome C 1e-09
3exb_A295 Crystal Structure Of Cytochrome C Peroxidase With A 1e-09
1kok_A294 Crystal Structure Of Mesopone Cytochrome C Peroxida 1e-09
1kxm_A290 Crystal Structure Of Cytochrome C Peroxidase With A 1e-09
1kxn_A289 Crystal Structure Of Cytochrome C Peroxidase With A 1e-09
1dcc_A296 2.2 Angstrom Structure Of Oxyperoxidase: A Model Fo 1e-09
4a78_A296 Cytochrome C Peroxidase M119w In Complex With Guiac 1e-09
2cl4_X261 Ascorbate Peroxidase R172a Mutant Length = 261 1e-09
1beq_A291 Interaction Between Proximal And Distals Regions Of 1e-09
2cep_A296 Role Of Met-230 In Intramolecular Electron Transfer 2e-09
1stq_A294 Cyrstal Structure Of Cytochrome C Peroxidase Mutant 2e-09
1bem_A291 Interaction Between Proximal And Distals Regions Of 2e-09
2vcf_X264 Structure Of Isoniazid (Inh) Bound To Cytosolic Soy 3e-09
1cmu_A294 The Role Of Aspartate-235 In The Binding Of Cations 3e-09
2y6b_A249 Ascorbate Peroxidase R38k Mutant Length = 249 3e-09
2y6a_A249 Ascorbate Peroxidase R38a Mutant Length = 249 3e-09
1bep_A291 Effect Of Unnatural Heme Substitution On Kinetics O 3e-09
2anz_A294 Cytochrome C Peroxidase In Complex With 2,6-Diamino 3e-09
2rbu_X292 Cytochrome C Peroxidase In Complex With Cyclopentan 3e-09
2xif_A249 The Structure Of Ascorbate Peroxidase Compound Ii L 3e-09
1a2f_A291 Probing The Strength And Character Of An Asp-His-X 3e-09
1oaf_A261 Ascobate Peroxidase From Soybean Cytosol In Complex 3e-09
2ccp_A296 X-Ray Structures Of Recombinant Yeast Cytochrome C 3e-09
2ggn_X261 Conformational Mobility In The Active Site Of A Hem 3e-09
1bej_A291 Interaction Between Proximal And Distals Regions Of 3e-09
1ccb_A297 The Asp-His-Fe Triad Of Cytochrome C Peroxidase Con 3e-09
1bek_A291 Effect Of Unnatural Heme Substitution On Kinetics O 3e-09
2vcs_A261 Structure Of Isoniazid (Inh) Bound To Cytosolic Soy 3e-09
3zch_A261 Ascorbate Peroxidase W41a-h42m Mutant Length = 261 3e-09
1ebe_A294 Laue Diffraction Study On The Structure Of Cytochro 4e-09
3zcy_A249 Ascorbate Peroxidase W41a-h42y Mutant Length = 249 4e-09
3zcg_A261 Ascorbate Peroxidase W41a-h42c Mutant Length = 261 4e-09
1a2g_A291 Probing The Strength And Character Of An Asp-His-X 4e-09
3e2o_A294 Crystal Structure Of Cytochrome C Peroxidase, N184r 5e-09
2ia8_A291 Kinetic And Crystallographic Studies Of A Redesigne 6e-09
1ccc_A297 The Asp-His-Fe Triad Of Cytochrome C Peroxidase Con 9e-09
1cce_A291 Construction Of A Bis-Aquo Heme Enzyme And Replacem 1e-08
1dse_A292 Cytochrome C Peroxidase H175g Mutant, Imidazole Com 1e-08
1ds4_A292 Cytochrome C Peroxidase H175g Mutant, Imidazole Com 1e-08
1iyn_A295 Crystal Structure Of Chloroplastic Ascorbate Peroxi 5e-07
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2 Length = 306 Back     alignment and structure 
Iteration: 1

 Score =  147 bits (372), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 116/228 (50%), Gaps = 10/228 (4%)
Query: 8   RNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEIL 67
           R F  ++NIK A+E  CPGVVSC+D+L L+    V   GGP   +  GRRD   +     
Sbjct: 76  RGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVLLGRRDSLTANLAGA 135
Query: 68  EQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY-----PEVDP 122
              +P   +S+S +  +F+A+G++   LVAL G+H+ GR  C    +RL+        DP
Sbjct: 136 NSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFNNRLFNFSGTGNPDP 195
Query: 123 ALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQL-- 180
            LN   +  +   CP    +  A      D  TP   DNNY+ N+  N GL+  D +L  
Sbjct: 196 TLNSTLLSTLQQLCPQ---NGSASTITNLDLSTPDAFDNNYFANLQSNDGLLQSDQELFS 252
Query: 181 ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVC 228
            T   T   V   A +Q  FF+ F++++  +   +PLTG+ GEIR  C
Sbjct: 253 TTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDC 300
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1 Length = 309 Back     alignment and structure
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase. Length = 308 Back     alignment and structure
>pdb|1SCH|A Chain A, Peanut Peroxidase Length = 294 Back     alignment and structure
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N Length = 300 Back     alignment and structure
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From Royal Palm Tree Length = 304 Back     alignment and structure
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate Length = 323 Back     alignment and structure
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln Length = 309 Back     alignment and structure
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y Length = 306 Back     alignment and structure
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly Length = 309 Back     alignment and structure
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant Horseradish Peroxidase C (hrp C) Length = 308 Back     alignment and structure
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With Benzhydroxamic Acid Length = 308 Back     alignment and structure
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Length = 306 Back     alignment and structure
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase Length = 304 Back     alignment and structure
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase Mutant C197t Length = 271 Back     alignment and structure
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In Cytochrome C Peroxidase (Ccp) Length = 294 Back     alignment and structure
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase Length = 271 Back     alignment and structure
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major Peroxidase-Cytochrome C Complex Length = 268 Back     alignment and structure
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C Peroxidase (Ccp) Length = 294 Back     alignment and structure
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding Variant Of Cytochrome C Peroxidase Length = 294 Back     alignment and structure
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X Hydrogen Bond By Introducing Buried Charges Length = 291 Back     alignment and structure
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase Length = 249 Back     alignment and structure
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of Cytochrome C Peroxidase Length = 294 Back     alignment and structure
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase Towards A Small Molecular Substrate Peroxidase By Substituting Tyrosine For Phe 202 Length = 291 Back     alignment and structure
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a Length = 296 Back     alignment and structure
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of The Peroxidase Ferryl Intermediate Length = 291 Back     alignment and structure
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C Peroxidase Mutant N184r Y36a Length = 294 Back     alignment and structure
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop Length = 294 Back     alignment and structure
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site Specific Cross-Link Length = 294 Back     alignment and structure
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol Length = 296 Back     alignment and structure
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical Of Cytochrome C Peroxidase Length = 296 Back     alignment and structure
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant: Ccpk2m2 Length = 294 Back     alignment and structure
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I Length = 294 Back     alignment and structure
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site Length = 293 Back     alignment and structure
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical Of Cytochrome C Peroxidase Length = 296 Back     alignment and structure
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5- Diaminopyridine Length = 294 Back     alignment and structure
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome C Peroxidase Length = 287 Back     alignment and structure
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase Length = 294 Back     alignment and structure
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1- Cytochrome C And Yeast Cytochrome C Peroxidase Length = 294 Back     alignment and structure
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant Length = 296 Back     alignment and structure
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C Peroxidase Length = 293 Back     alignment and structure
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii Length = 294 Back     alignment and structure
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase Showing A Novel Trp-Tyr Covalent Cross-Link Length = 294 Back     alignment and structure
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between Cytochrome C Peroxidase And Hydrogen Peroxide Length = 296 Back     alignment and structure
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of Cytochrome C Peroxidase Compound I Length = 296 Back     alignment and structure
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between Cytochrome C Peroxidase And Hydrogen Peroxide Length = 296 Back     alignment and structure
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer Partners, Cytochrome C Peroxidase And Cytochrome C Length = 296 Back     alignment and structure
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of Cytochrome C Peroxidase By Structure-Based Engineering Length = 296 Back     alignment and structure
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls The Reduction Potential, Electronic Structure, And Coupling Of The Tryptophan Free-Radical To The Heme Length = 297 Back     alignment and structure
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of Cytochrome C Peroxidase Length = 294 Back     alignment and structure
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C Peroxidase And Three Heme-Cleft Mutants Prepared By Site-Directed Mutagenesis Length = 296 Back     alignment and structure
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A Proposed Electron Pathway Excised In A Complex With A Peptide Wire Length = 295 Back     alignment and structure
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (Mpccp) Length = 294 Back     alignment and structure
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A Proposed Electron Transfer Pathway Excised To Form A Ligand Binding Channel Length = 290 Back     alignment and structure
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A Proposed Electron Transfer Pathway Excised To Form A Ligand Binding Channel Length = 289 Back     alignment and structure
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The Enzyme:peroxide Complex Length = 296 Back     alignment and structure
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol Length = 296 Back     alignment and structure
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant Length = 261 Back     alignment and structure
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer Between The Oxyferryl Heme And Trp 191 In Cytochrome C Peroxidase Compound Ii Length = 296 Back     alignment and structure
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant: Ccpk2m3 Length = 294 Back     alignment and structure
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean Ascorbate Peroxidase Length = 264 Back     alignment and structure
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An Artificial Cavity At The Radical Site Of Cytochrome C Peroxidase Length = 294 Back     alignment and structure
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant Length = 249 Back     alignment and structure
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant Length = 249 Back     alignment and structure
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of Electron Transfer In Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With 2,6-Diaminopyridine Length = 294 Back     alignment and structure
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With Cyclopentane-Carboximidamide Length = 292 Back     alignment and structure
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii Length = 249 Back     alignment and structure
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X Hydrogen Bond By Introducing Buried Charges Length = 291 Back     alignment and structure
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With Ascorbate Length = 261 Back     alignment and structure
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C Peroxidase And Three Heme-Cleft Mutants Prepared By Site-Directed Mutagenesis Length = 296 Back     alignment and structure
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme Peroxidase Length = 261 Back     alignment and structure
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls The Reduction Potential, Electronic Structure, And Coupling Of The Tryptophan Free-Radical To The Heme Length = 297 Back     alignment and structure
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of Electron Transfer In Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean Ascorbate Peroxidase Mutant H42a Length = 261 Back     alignment and structure
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant Length = 261 Back     alignment and structure
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C Peroxidase Compound I Length = 294 Back     alignment and structure
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant Length = 249 Back     alignment and structure
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant Length = 261 Back     alignment and structure
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X Hydrogen Bond By Introducing Buried Charges Length = 291 Back     alignment and structure
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant Length = 294 Back     alignment and structure
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned Manganese-Binding Site In Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls The Reduction Potential, Electronic Structure, And Coupling Of The Tryptophan Free-Radical To The Heme Length = 297 Back     alignment and structure
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement With Exogenous Ligand Length = 291 Back     alignment and structure
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex, With Phosphate Bound, Ph 6, 100k Length = 292 Back     alignment and structure
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex, Ph 6, 100k Length = 292 Back     alignment and structure
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase From Tobacco Plants And Structural Insights For Its Instability Length = 295 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query238
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 3e-82
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 4e-82
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 1e-81
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 3e-80
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 3e-79
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 4e-78
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 5e-76
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 1e-53
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 2e-46
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 1e-45
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 2e-43
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 2e-40
2e39_A344 Peroxidase; heme protein, coordination geometry of 3e-40
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 3e-36
3riv_A271 Ascorbate peroxidase; alpha helical bundle, heme p 1e-22
3e2o_A294 CCP, cytochrome C peroxidase; cytochrome C peroxid 2e-19
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Length = 294 Back     alignment and structure
 Score =  246 bits (631), Expect = 3e-82
 Identities = 77/225 (34%), Positives = 107/225 (47%), Gaps = 5/225 (2%)

Query: 8   RNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEIL 67
           R F  I+ IK  VE  CPGVVSCADIL ++ RD VVALGG    +  GRRD   +     
Sbjct: 75  RGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLLGRRDSTTASLSSA 134

Query: 68  EQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPEVDPALNPD 127
              LP    ++S ++  F+  G     LV L G+H++G+  C     R+Y   +  ++P 
Sbjct: 135 NSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRTRIYN--ESNIDPT 192

Query: 128 HVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTR 187
           +   +   CP    D         D  TP   DN YY N+ + KGL+  D QL     T 
Sbjct: 193 YAKSLQANCPSVGGDTNLSP---FDVTTPNKFDNAYYINLRNKKGLLHSDQQLFNGVSTD 249

Query: 188 PYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 232
             V   + +   F  +F  A+  +   +PLTGT G+IR  C   N
Sbjct: 250 SQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 294
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} Length = 304 Back     alignment and structure
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Length = 309 Back     alignment and structure
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Length = 304 Back     alignment and structure
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Length = 306 Back     alignment and structure
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Length = 309 Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Length = 300 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Length = 295 Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Length = 261 Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* Length = 331 Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Length = 357 Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} Length = 338 Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Length = 344 Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Length = 343 Back     alignment and structure
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* Length = 271 Back     alignment and structure
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} PDB: 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* 1mk8_A* 1mkq_A* ... Length = 294 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query238
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 100.0
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 100.0
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 100.0
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 100.0
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 100.0
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 100.0
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 100.0
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 100.0
3riv_A271 Ascorbate peroxidase; alpha helical bundle, heme p 100.0
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 100.0
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 100.0
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 100.0
2e39_A344 Peroxidase; heme protein, coordination geometry of 100.0
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 100.0
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 100.0
2cca_A 740 Peroxidase/catalase T; oxidoreductase, catalase-pe 100.0
1itk_A 731 Catalase-peroxidase; heme protein, oxidoreductase; 100.0
1ub2_A 720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 100.0
3n3r_A 748 Catalase-peroxidase; E198A variant, tuberclosis, i 100.0
3vli_A 737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 100.0
3e2o_A294 CCP, cytochrome C peroxidase; cytochrome C peroxid 100.0
3ut2_A 764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 100.0
1u2k_A309 Peroxidase/catalase HPI; KATG, catalase-peroxidase 100.0
3vli_A737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 100.0
1itk_A731 Catalase-peroxidase; heme protein, oxidoreductase; 100.0
3n3r_A748 Catalase-peroxidase; E198A variant, tuberclosis, i 100.0
2cca_A740 Peroxidase/catalase T; oxidoreductase, catalase-pe 100.0
3ut2_A764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 100.0
1ub2_A720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 100.0
3rrw_A268 Thylakoid lumenal 29 kDa protein, chloroplastic; c 100.0
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} SCOP: a.93.1.0 Back     alignment and structure
Probab=100.00  E-value=4e-83  Score=571.70  Aligned_cols=229  Identities=34%  Similarity=0.529  Sum_probs=221.1

Q ss_pred             CCCCC-CcchHHHHHHHHHHHHhhCCCcccHHHHHHHHhhhhHhhcCCCccccCCCCCCCCCchhhhhhccCCCCCCCHH
Q 026488            1 MDRSF-GMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMS   79 (238)
Q Consensus         1 ~~~N~-~l~g~~~i~~iK~~le~~c~~~VScADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~   79 (238)
                      +++|. |||||++||.||++||+.||++|||||||+||||+||+++|||.|+|++||+|++++...+++.+||+|+.+++
T Consensus        67 ~~~N~~~lrgf~vid~iK~~le~~Cp~~VScADilalAardav~~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~~~~~  146 (304)
T 3hdl_A           67 AIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPSGRRDGTVSLASEANAQIPSPLFNAT  146 (304)
T ss_dssp             STTTTTTCCCHHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHHHCCCCCCEECCCBCSCCCHHHHHHHSCCTTCCHH
T ss_pred             CCCcccchHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhhhhhccCCCccccccCccCCCCCCccccccCCCCCCCCHH
Confidence            57897 89999999999999999999999999999999999999999999999999999999998888889999999999


Q ss_pred             HHHHHHHhcCCCCCCceeeeccccccccccccccccccC-----CCCCCCCcchhhHhhhcCCCCCCCCC--CCccccCC
Q 026488           80 VVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYP-----EVDPALNPDHVPHMLHKCPDAIPDPK--AVQYVRND  152 (238)
Q Consensus        80 ~l~~~F~~~Gl~~~elVaL~GaHtiG~~~~~~f~~rl~~-----~~dp~~d~~~~~~L~~~Cp~~~~~~~--~~~~~~~D  152 (238)
                      +|++.|++|||+++||||||||||||++||.+|.+|+||     .+||+||+.|++.|++.||.   .++  +++.++||
T Consensus       147 ~l~~~F~~~Gl~~~d~VaLsGaHTiG~ahC~~f~~Rly~f~~~~~~DP~ld~~~a~~L~~~Cp~---~~~~~~~~~~~lD  223 (304)
T 3hdl_A          147 QLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTNRLYNFNSGSGIDPTLSPSYAALLRNTCPA---NSTRFTPITVSLD  223 (304)
T ss_dssp             HHHHHHHTTTCCHHHHHHHGGGGGSSEEEGGGTGGGTSSCSSSSSSCTTSCHHHHHHHHHHSCT---TCCTTSCCEEESC
T ss_pred             HHHHHHHHcCCCHHHhhhhhccccccccccchhhhhhcccCCCCCCCCcccHHHHHHHhccCCC---CCCCCCccccCCC
Confidence            999999999999999999999999999999999999997     48999999999999999997   344  67788999


Q ss_pred             CCCCCccChHHHHHhhcccccchhhhhhhcCcCcHHHHHHHhhcHHHHHHHHHHHHHHHhhCCCCCCCCCcccccccccc
Q 026488          153 RGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN  232 (238)
Q Consensus       153 ~~tp~~fDn~Yy~~l~~~~gll~SD~~L~~d~~t~~~v~~yA~~~~~F~~~Fa~Am~Km~~l~v~tG~~GeiR~~C~~~n  232 (238)
                      +.||.+|||+||++|+.++|||+|||+|+.|++|+++|++||.||++|+++|++||+||++|+|+||.+||||++|++||
T Consensus       224 ~~TP~~FDN~Yy~nL~~~~glL~SDq~L~~d~~t~~~V~~yA~~~~~F~~~Fa~AmvKmg~igv~tg~~GeIR~~C~~~N  303 (304)
T 3hdl_A          224 IITPSVLDNMYYTGVQLTLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCSVVN  303 (304)
T ss_dssp             SSSTTSCSTHHHHHHHTTCCCSHHHHGGGSSHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTTCCCTTSSBCCSBTTBCC
T ss_pred             CCCcccccHHHHHHHHhCcCCCCCCHHHhcCccHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCCCCCCCeeeCCccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Back     alignment and structure
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Back     alignment and structure
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Back     alignment and structure
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Back     alignment and structure
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Back     alignment and structure
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* 4ged_A* Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* 4fcn_A* 4g05_A* 4fcs_A* 4fef_A* 4fdq_A* Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} SCOP: a.93.1.0 Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} SCOP: a.93.1.1 PDB: 4a71_A* 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 4a6z_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* ... Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure
>1u2k_A Peroxidase/catalase HPI; KATG, catalase-peroxidase, C-terminal domain, oxidoreductase; 2.00A {Escherichia coli} SCOP: a.93.1.3 PDB: 1u2l_A 1u2j_A Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3rrw_A Thylakoid lumenal 29 kDa protein, chloroplastic; chloroplast thylakoid lumen, plant protein; 2.50A {Arabidopsis thaliana} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 238
d1pa2a_306 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 1e-68
d1fhfa_304 a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine m 5e-68
d1bgpa_309 a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vu 3e-67
d1scha_294 a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hy 1e-65
d1qgja_300 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 7e-65
d1gwua_307 a.93.1.1 (A:) Plant peroxidase {Horseradish (Armor 2e-61
d1yyda1357 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) { 9e-38
d1llpa_343 a.93.1.1 (A:) Fungal peroxidase (ligninase) {White 5e-35
d2e39a1336 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) { 1e-34
d2euta1291 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {B 2e-32
d1iyna_275 a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco 2e-27
d1oafa_250 a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glyci 8e-26
d1itka2308 a.93.1.3 (A:424-731) Catalase-peroxidase KatG {Arc 6e-08
d1itka1406 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Arch 2e-07
d1ub2a2294 a.93.1.3 (A:427-720) Catalase-peroxidase KatG {Syn 2e-07
d1mwva2308 a.93.1.3 (A:441-748) Catalase-peroxidase KatG {Bur 4e-07
d2ccaa1410 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Myco 3e-06
d1u2ka_292 a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholder 4e-06
d1mwva1406 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burk 3e-04
d1ub2a1406 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Syne 0.003
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Length = 306 Back     information, alignment and structure

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]

 Score =  211 bits (537), Expect = 1e-68
 Identities = 80/233 (34%), Positives = 117/233 (50%), Gaps = 10/233 (4%)

Query: 7   MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEI 66
            R F  ++NIK A+E  CPGVVSC+D+L L+    V   GGP   +  GRRD   +    
Sbjct: 75  ARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVLLGRRDSLTANLAG 134

Query: 67  LEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYP-----EVD 121
               +P   +S+S +  +F+A+G++   LVAL G+H+ GR  C    +RL+        D
Sbjct: 135 ANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFNNRLFNFSGTGNPD 194

Query: 122 PALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLA 181
           P LN   +  +   CP    +  A      D  TP   DNNY+ N+  N GL+  D +L 
Sbjct: 195 PTLNSTLLSTLQQLCP---QNGSASTITNLDLSTPDAFDNNYFANLQSNDGLLQSDQELF 251

Query: 182 --TDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 232
             T   T   V   A +Q  FF+ F++++  +   +PLTG+ GEIR  C   N
Sbjct: 252 STTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDCKKVN 304
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 304 Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Length = 309 Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Length = 294 Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Length = 300 Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Length = 307 Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 357 Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 343 Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Length = 336 Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 291 Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 275 Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 250 Back     information, alignment and structure
>d1itka2 a.93.1.3 (A:424-731) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 308 Back     information, alignment and structure
>d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 406 Back     information, alignment and structure
>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Length = 294 Back     information, alignment and structure
>d1mwva2 a.93.1.3 (A:441-748) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Length = 308 Back     information, alignment and structure
>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Length = 410 Back     information, alignment and structure
>d1u2ka_ a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Length = 292 Back     information, alignment and structure
>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Length = 406 Back     information, alignment and structure
>d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Length = 406 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query238
d1fhfa_304 Plant peroxidase {Soybean (Glycine max) [TaxId: 38 100.0
d1pa2a_306 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1bgpa_309 Plant peroxidase {Barley (Hordeum vulgare), peroxi 100.0
d1qgja_300 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1gwua_307 Plant peroxidase {Horseradish (Armoracia rusticana 100.0
d1scha_294 Plant peroxidase {Peanut (Arachis hypogaea) [TaxId 100.0
d1iyna_275 Ascorbate peroxidase {Common tobacco (Nicotiana ta 100.0
d1yyda1357 Fungal peroxidase (ligninase) {Basidomycetos fungu 100.0
d2euta1291 Cytochrome c peroxidase, CCP {Baker's yeast (Sacch 100.0
d1oafa_250 Ascorbate peroxidase {Soybean (Glycine max) [TaxId 100.0
d2e39a1336 Fungal peroxidase (ligninase) {Arthromyces ramosus 100.0
d1llpa_343 Fungal peroxidase (ligninase) {White rot basidiomy 100.0
d1itka1406 Catalase-peroxidase KatG {Archaeon Haloarcula mari 100.0
d1mwva1406 Catalase-peroxidase KatG {Burkholderia pseudomalle 100.0
d1mwva2308 Catalase-peroxidase KatG {Burkholderia pseudomalle 100.0
d2ccaa1410 Catalase-peroxidase KatG {Mycobacterium tuberculos 99.98
d1u2ka_292 Catalase-peroxidase KatG {Burkholderia pseudomalle 99.98
d1itka2308 Catalase-peroxidase KatG {Archaeon Haloarcula mari 99.98
d1ub2a2294 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 99.97
d1ub2a1406 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 99.97
d2ccaa2285 Catalase-peroxidase KatG {Mycobacterium tuberculos 99.95
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Soybean (Glycine max) [TaxId: 3847]

Probab=100.00  E-value=3.4e-77  Score=533.04  Aligned_cols=230  Identities=33%  Similarity=0.592  Sum_probs=219.3

Q ss_pred             CCCCCC-cchHHHHHHHHHHHHhhCCCcccHHHHHHHHhhhhHhhcCCCccccCCCCCCCCCchhhhhhccCCCCCCCHH
Q 026488            1 MDRSFG-MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMS   79 (238)
Q Consensus         1 ~~~N~~-l~g~~~i~~iK~~le~~c~~~VScADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~   79 (238)
                      +++|.+ ++||++||.||++||+.||++|||||||+||||+||+++|||.|+|++||+|++++...++..+||.|+.+++
T Consensus        67 ~~~N~~~~~g~~~id~iK~~le~~cp~~VScADIlalAardAv~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~  146 (304)
T d1fhfa_          67 ALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPLGRRDSLTANRTLANQNLPAPFFNLT  146 (304)
T ss_dssp             STTTTTTCCCHHHHHHHHHHHHTTSTTTSCHHHHHHHHHHHHHHTTTCCCCCCCBCCCBCSCCCHHHHHHHSCCTTCCHH
T ss_pred             CCcccccchhHHHHHHHHHHHHhhCCCccCHHHHHHHHHhhhhhhcCCCcccccCCCcCcCccccccccccCCCCCCCHH
Confidence            468975 5999999999999999999999999999999999999999999999999999999998888889999999999


Q ss_pred             HHHHHHHhcCCCCCCceeeeccccccccccccccccccC-----CCCCCCCcchhhHhhhcCCCCCCCCCCCccccCCCC
Q 026488           80 VVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYP-----EVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRG  154 (238)
Q Consensus        80 ~l~~~F~~~Gl~~~elVaL~GaHtiG~~~~~~f~~rl~~-----~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~~D~~  154 (238)
                      +|+.+|++|||+.+|||||+||||||++||.+|..|+|+     .+||++++.|+..|+..||.   .+...+.+.+|..
T Consensus       147 ~l~~~F~~~Gl~~~d~VaLsGaHTiG~ahc~~~~~rl~~~~~~~~~d~~~~~~~~~~L~~~c~~---~~~~~~~~~~d~~  223 (304)
T d1fhfa_         147 QLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQ---NATGDNLTNLDLS  223 (304)
T ss_dssp             HHHHHHHHTTCCHHHHHHHGGGGGSCEEEGGGTGGGTSCGGGSSSCCTTSCHHHHHHHHHHSCS---SCSSCCEEESCSS
T ss_pred             HHHHHHHHcCCCHHHHHHHhhhhhhcccccccccccccCCCCCCCCCcccCHHHHHHHHHhcCC---CCCCCcccccCCC
Confidence            999999999999999999999999999999999999996     68999999999999999997   4455567789989


Q ss_pred             CCCccChHHHHHhhcccccchhhhhhhcCc--CcHHHHHHHhhcHHHHHHHHHHHHHHHhhCCCCCCCCCcccccccccc
Q 026488          155 TPMVLDNNYYRNILDNKGLMMVDHQLATDK--RTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN  232 (238)
Q Consensus       155 tp~~fDn~Yy~~l~~~~gll~SD~~L~~d~--~t~~~v~~yA~~~~~F~~~Fa~Am~Km~~l~v~tG~~GeiR~~C~~~n  232 (238)
                      ||.+|||+||++++.++|+|+||++|+.||  +|+++|++||.||++|+++|++||+||++|+|+||.+||||++|++||
T Consensus       224 tp~~fDn~Yy~~l~~~~glL~SD~~L~~dp~~~t~~~V~~yA~d~~~F~~~F~~Am~Km~~lgv~tg~~GeiR~~C~~~N  303 (304)
T d1fhfa_         224 TPDQFDNRYYSNLLQLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCNFVN  303 (304)
T ss_dssp             STTSCSTHHHHHHHTTCCSSHHHHTTTSSTTCSSHHHHHHHHHCHHHHHHHHHHHHHHHTTTTCCCTTSSBCCSBTTBCC
T ss_pred             CCCccccHHHHHHhhcCcccHhhHHHHhCCCchHHHHHHHHhhCHHHHHHHHHHHHHHHhcCCCCCCCCCcccCcccCcC
Confidence            999999999999999999999999999996  799999999999999999999999999999999999999999999999


Q ss_pred             C
Q 026488          233 K  233 (238)
Q Consensus       233 ~  233 (238)
                      .
T Consensus       304 ~  304 (304)
T d1fhfa_         304 G  304 (304)
T ss_dssp             C
T ss_pred             C
Confidence            4
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1mwva2 a.93.1.3 (A:441-748) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1u2ka_ a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1itka2 a.93.1.3 (A:424-731) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d2ccaa2 a.93.1.3 (A:436-720) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure