Citrus Sinensis ID: 026511

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLDGMDGRVL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccEEEHHHHccccEEEEEEccHHHHHHHHHHcHHHHHHHHHcccEEEEEEcccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccEEEEEEcccEEEccccccccHHHHHHcccccccHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEccccEEEHHHHccccEEEEEEccHHHHHHHHHHHHHHHHHHHHccEEEEEcccccccccccccHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHccccccccEEEEEEEccEEEccccccccHHHHHHHcccHHHHHcccccccccccc
Coil and Loop (DISEMBL)
MFFYLAFVASGSLGGLIAITQLIGAlanparaadvpEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLSNLklrvdekkiisVNNLRGIARLVICSgpasyimesfkrsepfteSLLERGVLVVSfttdgnipsfefeeSEEMKEFTRKRKRLWQLTPVYVSEWSKWLDEqkrtagispespvYLSLRLdgrvrgsgvgyppwnafvaqlppvkgiwsglldgmdgrvl
Flexible Loop (DISEMBL)
MFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAqlarlsreeslsnlklrvdekkiisvnnlrgiaRLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTdgnipsfefeeseemKEFTrkrkrlwqltpvyvsewskwLDEQkrtagispespvylSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGlldgmdgrvl
Low Complexity Region (SEG)
MFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPsfefeeseeMKEFTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLDGMDGRVL
Disordered region (IsUnstruct)
*FFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSR********************LKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFE**********TRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLD*******
Disordered Region (DISOPRED)
MFFYLAFVASGSLGGLIAITQLIGALA***R**DVPEILKGLSIDVSAVSLFAFLYSREN*********************RV**KKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGN**********************WQLTPVYVSEWSKWLDEQKR****SPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLDGMDGRVL
Disordered Region (DISEMBL)
MFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFE************KRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLDGMDGRVL
Disordered Region (DISPRO)
MFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTT*********************RKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLDGMDG***
Transmembrane Helix (TMHMM)
iHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLDGMDGRVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
224129560	300	predicted protein [Populus trichocarpa]	0.995	0.786	0.813	1e-112
359480082	328	PREDICTED: uncharacterized protein LOC10	1.0	0.722	0.810	1e-111
297744261	346	unnamed protein product [Vitis vinifera]	1.0	0.684	0.810	1e-111
388514469	334	unknown [Lotus japonicus]	0.995	0.706	0.792	1e-107
356548113	326	PREDICTED: uncharacterized protein LOC10	0.983	0.714	0.792	1e-106
449468602	338	PREDICTED: uncharacterized protein LOC10	1.0	0.701	0.746	1e-101
255560289	331	conserved hypothetical protein [Ricinus	1.0	0.716	0.831	1e-100
449530478	254	PREDICTED: LOW QUALITY PROTEIN: uncharac	1.0	0.933	0.738	2e-99
297803184	328	hypothetical protein ARALYDRAFT_913640 [	0.995	0.719	0.701	2e-94
18417257	347	uncharacterized protein [Arabidopsis tha	0.995	0.680	0.684	7e-94

>gi|224129560|ref|XP_002320616.1| predicted protein [Populus trichocarpa] gi|222861389|gb|EEE98931.1| predicted protein [Populus trichocarpa]

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/236 (81%), Positives = 218/236 (92%)

Query: 1   MFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSREN 60
           MFFYLAF+ASG+LGGLIA T+LI ALANP+RAA+VPEILKGL ID+ A ++FAFLY REN
Sbjct: 65  MFFYLAFLASGALGGLIATTRLIAALANPSRAAEVPEILKGLGIDIGAAAIFAFLYYREN 124

Query: 61  KAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPF 120
           KAKN QLARLSREE+LSNLKLRVDEKKIISV++LRG+ARLVIC+GPA +I+ESFK SEPF
Sbjct: 125 KAKNVQLARLSREENLSNLKLRVDEKKIISVSSLRGVARLVICAGPAPFILESFKLSEPF 184

Query: 121 TESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQLTPVYVSEWSKWLDEQK 180
           T+SLL+RGVLVV F ++GN+PSFEF+E EEMKE T KRKRLWQL P+YVSEWS WLDEQK
Sbjct: 185 TQSLLDRGVLVVPFASNGNLPSFEFDEGEEMKELTTKRKRLWQLAPIYVSEWSNWLDEQK 244

Query: 181 RTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLDGMDGRV 236
           + AG+SPESPVYLSLR+DGRVRGSGVGYPPWNAFVAQLPP KG+WSGLLDGMDGRV
Sbjct: 245 KLAGVSPESPVYLSLRMDGRVRGSGVGYPPWNAFVAQLPPSKGMWSGLLDGMDGRV 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480082|ref|XP_002267644.2| PREDICTED: uncharacterized protein LOC100253269 [Vitis vinifera]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/237 (81%), Positives = 217/237 (91%)

Query: 1   MFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSREN 60
           MFFYLAF+ASG+LGGLIA TQLI AL N +RA  VP+ILKGL ID+ AV++FAFLYSRE+
Sbjct: 92  MFFYLAFIASGALGGLIATTQLIAALTNSSRAPLVPDILKGLGIDIGAVAIFAFLYSRES 151

Query: 61  KAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPF 120
            AKNAQLARL+REESLSNLKLRVDEKK+ISVN+LRGIARLVIC+GPA +I ESFK S+PF
Sbjct: 152 SAKNAQLARLTREESLSNLKLRVDEKKVISVNDLRGIARLVICAGPAPFIAESFKLSQPF 211

Query: 121 TESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQLTPVYVSEWSKWLDEQK 180
           T+ LL+RGVLVV F TDG +PSFE+EESEEMK+ T KRKRLWQL PVYVSEWSKWLDEQK
Sbjct: 212 TQGLLDRGVLVVPFVTDGKLPSFEYEESEEMKDITTKRKRLWQLVPVYVSEWSKWLDEQK 271

Query: 181 RTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLDGMDGRVL 237
           + AG+SPESPVYLSLR+DGRVRGSGVGYPPWNAFVAQLPP+KG+W+GLLDGMDGRVL
Sbjct: 272 KLAGVSPESPVYLSLRMDGRVRGSGVGYPPWNAFVAQLPPIKGMWTGLLDGMDGRVL 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744261|emb|CBI37231.3| unnamed protein product [Vitis vinifera]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/237 (81%), Positives = 217/237 (91%)

Query: 1   MFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSREN 60
           MFFYLAF+ASG+LGGLIA TQLI AL N +RA  VP+ILKGL ID+ AV++FAFLYSRE+
Sbjct: 110 MFFYLAFIASGALGGLIATTQLIAALTNSSRAPLVPDILKGLGIDIGAVAIFAFLYSRES 169

Query: 61  KAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPF 120
            AKNAQLARL+REESLSNLKLRVDEKK+ISVN+LRGIARLVIC+GPA +I ESFK S+PF
Sbjct: 170 SAKNAQLARLTREESLSNLKLRVDEKKVISVNDLRGIARLVICAGPAPFIAESFKLSQPF 229

Query: 121 TESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQLTPVYVSEWSKWLDEQK 180
           T+ LL+RGVLVV F TDG +PSFE+EESEEMK+ T KRKRLWQL PVYVSEWSKWLDEQK
Sbjct: 230 TQGLLDRGVLVVPFVTDGKLPSFEYEESEEMKDITTKRKRLWQLVPVYVSEWSKWLDEQK 289

Query: 181 RTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLDGMDGRVL 237
           + AG+SPESPVYLSLR+DGRVRGSGVGYPPWNAFVAQLPP+KG+W+GLLDGMDGRVL
Sbjct: 290 KLAGVSPESPVYLSLRMDGRVRGSGVGYPPWNAFVAQLPPIKGMWTGLLDGMDGRVL 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514469|gb|AFK45296.1| unknown [Lotus japonicus]

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/236 (79%), Positives = 209/236 (88%)

Query: 1   MFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSREN 60
           MFFY+AF+AS SLG  IA TQLIGALAN +RA+ VPEILKGL ID+ AVS+FAFLY R+N
Sbjct: 99  MFFYVAFIASASLGAFIAATQLIGALANSSRASQVPEILKGLGIDIGAVSIFAFLYFRDN 158

Query: 61  KAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPF 120
           KAKNAQ ARLSREE LSNLKLRVDEKKII V++LRGIARLVIC+GP S+I ESFKRSEPF
Sbjct: 159 KAKNAQEARLSREEFLSNLKLRVDEKKIIPVSSLRGIARLVICAGPESFITESFKRSEPF 218

Query: 121 TESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQLTPVYVSEWSKWLDEQK 180
           TE L++RGVLVV F TDGN P  EFEE+EEMK+   +RKRLWQLTPVY++EWS WLDEQK
Sbjct: 219 TEGLMDRGVLVVPFVTDGNSPDLEFEETEEMKQLATRRKRLWQLTPVYITEWSNWLDEQK 278

Query: 181 RTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLDGMDGRV 236
           + AG+S ESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKG+W+GLLDG DGRV
Sbjct: 279 KLAGVSSESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGMWTGLLDGFDGRV 334

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548113|ref|XP_003542448.1| PREDICTED: uncharacterized protein LOC100799768 [Glycine max]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/236 (79%), Positives = 213/236 (90%), Gaps = 3/236 (1%)

Query: 1   MFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSREN 60
           MFFY+AFVASG+LGG IA TQLIGALAN +RA++VPEILKGL ID++AVSLFAFLY REN
Sbjct: 94  MFFYIAFVASGALGGFIATTQLIGALANSSRASEVPEILKGLGIDLAAVSLFAFLYFREN 153

Query: 61  KAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPF 120
           KAKNAQ+ARLSREESLSNLKLRVDEKKII VN+LRGIARLVIC+GPAS++ ESFKRSEPF
Sbjct: 154 KAKNAQVARLSREESLSNLKLRVDEKKIIPVNSLRGIARLVICAGPASFVTESFKRSEPF 213

Query: 121 TESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQLTPVYVSEWSKWLDEQK 180
           T+SLL+RGVLVV F TDGN P+ EFEE+EE+     +RKRLWQL PVY++EWS+WLDEQK
Sbjct: 214 TDSLLDRGVLVVPFVTDGNSPALEFEETEELAT---RRKRLWQLAPVYINEWSEWLDEQK 270

Query: 181 RTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLDGMDGRV 236
           + AG+  +SPVYLSLRLDGRVRGSGVGYPPWNA VAQLP VKG+W+GLLDG DGRV
Sbjct: 271 KLAGVPSDSPVYLSLRLDGRVRGSGVGYPPWNALVAQLPQVKGMWTGLLDGFDGRV 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468602|ref|XP_004152010.1| PREDICTED: uncharacterized protein LOC101206246 [Cucumis sativus]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/237 (74%), Positives = 208/237 (87%)

Query: 1   MFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSREN 60
           MFFYL F+ASG+LGGLIA TQL+GALAN +RA +VP+IL+GL +D  AV+LFAFLY REN
Sbjct: 102 MFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILEGLGVDFGAVALFAFLYFREN 161

Query: 61  KAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPF 120
            AKNAQLARLSREESLSNLKLRVD+ K+I ++ LRGIARLVIC+GP S+I+E+FK SEPF
Sbjct: 162 NAKNAQLARLSREESLSNLKLRVDQNKVIPISILRGIARLVICAGPESFIIEAFKSSEPF 221

Query: 121 TESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQLTPVYVSEWSKWLDEQK 180
           TE LLERGVLVV   TD    +FEF++ EE+K+ T KRKRLW+LTPVY++EWS WLDEQK
Sbjct: 222 TERLLERGVLVVPLATDVTTLNFEFDDREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK 281

Query: 181 RTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLDGMDGRVL 237
           + AG++ +SPVYLSLR+DGRVRGSGVGYPPWNA VAQLPPVKG+WSGLLDGMDGRVL
Sbjct: 282 KLAGVTSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560289|ref|XP_002521162.1| conserved hypothetical protein [Ricinus communis] gi|223539731|gb|EEF41313.1| conserved hypothetical protein [Ricinus communis]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/237 (83%), Positives = 216/237 (91%)

Query: 1   MFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSREN 60
           MFFYLAF+ASG LG LIA TQLI ALANPARAA+VPEILKGL ID+ AVS+FAFLY REN
Sbjct: 95  MFFYLAFIASGGLGALIATTQLIAALANPARAAEVPEILKGLGIDIGAVSIFAFLYYREN 154

Query: 61  KAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPF 120
            AK AQ+ARLSREESLSNLKLRVD+KKIIS+++LRGIARLVIC+GP SY++ESF+ SEPF
Sbjct: 155 NAKQAQVARLSREESLSNLKLRVDDKKIISISSLRGIARLVICAGPGSYVLESFRLSEPF 214

Query: 121 TESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQLTPVYVSEWSKWLDEQK 180
           T+SLL+RGVLVV F TDGN P+FEFEESEEMKE T KRKRLWQL P +VSEWSKWLDEQK
Sbjct: 215 TQSLLDRGVLVVPFATDGNFPNFEFEESEEMKEITSKRKRLWQLNPTFVSEWSKWLDEQK 274

Query: 181 RTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLDGMDGRVL 237
             AG+SPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLP VKG+WSGLLDGMDGRVL
Sbjct: 275 NMAGVSPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPQVKGMWSGLLDGMDGRVL 331

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449530478|ref|XP_004172222.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101223919, partial [Cucumis sativus]

 Score =  367 bits (943), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 175/237 (73%), Positives = 205/237 (86%)

Query: 1   MFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSREN 60
           MFFYL F+ASG+LGGLIA TQL+GALAN +RA +VP+IL+GL ID  AV+LFAFLY REN
Sbjct: 18  MFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILEGLGIDFGAVALFAFLYFREN 77

Query: 61  KAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPF 120
            AKNAQLARLSREESLSNLKLRVD+ K+I ++ LRGIARLVIC+GP S+I+E+FK SEPF
Sbjct: 78  NAKNAQLARLSREESLSNLKLRVDQNKVIPISILRGIARLVICAGPESFIIEAFKSSEPF 137

Query: 121 TESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQLTPVYVSEWSKWLDEQK 180
           TE LLERG   V   TD    +FEF++ EE+K+ T KRKRLW+LTPVY++EWS WLDEQK
Sbjct: 138 TERLLERGGFFVPLATDVTTLNFEFDDREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK 197

Query: 181 RTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLDGMDGRVL 237
           + AG++ +SPVYLSLR+DGRVRGSGVGYPPWNA VAQLPPVKG+WSGLLDGMDGRVL
Sbjct: 198 KLAGVTSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 254

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803184|ref|XP_002869476.1| hypothetical protein ARALYDRAFT_913640 [Arabidopsis lyrata subsp. lyrata] gi|297315312|gb|EFH45735.1| hypothetical protein ARALYDRAFT_913640 [Arabidopsis lyrata subsp. lyrata]

 Score =  351 bits (900), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 167/238 (70%), Positives = 206/238 (86%), Gaps = 2/238 (0%)

Query: 1   MFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSREN 60
           MFFYLAF+ASGSLGGLIA ++LIGALANPAR+ +V EI+KGL ID+ A SLFAFLY  EN
Sbjct: 91  MFFYLAFIASGSLGGLIATSRLIGALANPARSGEVLEIVKGLGIDIGAASLFAFLYFNEN 150

Query: 61  KAKNAQLARLSREESLSNLKLRVDEK-KIISVNNLRGIARLVICSGPASYIMESFKRSEP 119
           K KNAQ+ARLSREE+L+ LK+RV+E  K+ISV +LRGIARLVIC+GPA +I E+F RS+ 
Sbjct: 151 KTKNAQMARLSREENLAKLKMRVEENNKVISVGDLRGIARLVICAGPAEFIEEAFNRSKE 210

Query: 120 FTESLLERGVLVVSFTTDGNIPSFEFEESEEM-KEFTRKRKRLWQLTPVYVSEWSKWLDE 178
           FT+ L+ERGV+VV++ TDGN P  EF+E++ + +E +++RKRLW++TPV+V EW KWL+E
Sbjct: 211 FTQGLVERGVVVVAYATDGNSPVLEFDEADIVDEEISQRRKRLWRVTPVFVPEWEKWLNE 270

Query: 179 QKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLDGMDGRV 236
           QK+ A +S +SPVYLSLRLDGRVR SGVGYPPW AFVAQLPPVKGIW+GLLDGMDGRV
Sbjct: 271 QKKLANVSSDSPVYLSLRLDGRVRASGVGYPPWQAFVAQLPPVKGIWTGLLDGMDGRV 328

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18417257|ref|NP_567817.1| uncharacterized protein [Arabidopsis thaliana] gi|332660136|gb|AEE85536.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  348 bits (894), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 163/238 (68%), Positives = 205/238 (86%), Gaps = 2/238 (0%)

Query: 1   MFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSREN 60
           MFFYLAF+ASGSLGGLIA ++LIGALANPAR+ +V EI+KGL +D+ A SLFAFLY  EN
Sbjct: 110 MFFYLAFIASGSLGGLIATSRLIGALANPARSGEVLEIVKGLGVDIGAASLFAFLYFNEN 169

Query: 61  KAKNAQLARLSREESLSNLKLRVDEK-KIISVNNLRGIARLVICSGPASYIMESFKRSEP 119
           K KNAQ+ARLSREE+L  LK+RV+E  K+ISV +LRG+ARLVIC+GPA +I E+FKRS+ 
Sbjct: 170 KTKNAQMARLSREENLGKLKMRVEENNKVISVGDLRGVARLVICAGPAEFIEEAFKRSKE 229

Query: 120 FTESLLERGVLVVSFTTDGNIPSFEFEESE-EMKEFTRKRKRLWQLTPVYVSEWSKWLDE 178
           +T+ L+ERGV+VV++ TDGN P  EF+E++   +E +++RK+LW++TPV+V EW KWL+E
Sbjct: 230 YTQGLVERGVVVVAYATDGNSPVLEFDETDIADEEMSQRRKKLWRVTPVFVPEWEKWLNE 289

Query: 179 QKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLDGMDGRV 236
           QK+ A +S +SPVYLSLRLDGRVR SGVGYPPW AFVAQLPPVKG+W+GLLDGMDGRV
Sbjct: 290 QKKLANVSSDSPVYLSLRLDGRVRASGVGYPPWQAFVAQLPPVKGMWTGLLDGMDGRV 347

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
TAIR|locus:2117803	347	AT4G28740 "AT4G28740" [Arabido	0.995	0.680	0.672	4.9e-85
TAIR|locus:2024720	453	LPA1 "LOW PSII ACCUMULATION1"	0.552	0.289	0.282	8.6e-26

TAIR|locus:2117803 AT4G28740 "AT4G28740" [Arabidopsis thaliana (taxid:3702)]

 Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
 Identities = 160/238 (67%), Positives = 199/238 (83%)

Query:     1 MFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSREN 60
             MFFYLAF+ASGSLGGLIA ++LIGALANPAR+ +V EI+KGL +D+ A SLFAFLY  EN
Sbjct:   110 MFFYLAFIASGSLGGLIATSRLIGALANPARSGEVLEIVKGLGVDIGAASLFAFLYFNEN 169

Query:    61 KAKNAQLARLSREESLSNLKLRVDEK-KIISVNNLRGIARLVICSGPASYIMESFKRSEP 119
             K KNAQ+ARLSREE+L  LK+RV+E  K+ISV +LRG+ARLVIC+GPA +I E+FKRS+ 
Sbjct:   170 KTKNAQMARLSREENLGKLKMRVEENNKVISVGDLRGVARLVICAGPAEFIEEAFKRSKE 229

Query:   120 FTESLLERGVLVVSFTTDGNIPXXXXXXXXXM-KEFTRKRKRLWQLTPVYVSEWSKWLDE 178
             +T+ L+ERGV+VV++ TDGN P           +E +++RK+LW++TPV+V EW KWL+E
Sbjct:   230 YTQGLVERGVVVVAYATDGNSPVLEFDETDIADEEMSQRRKKLWRVTPVFVPEWEKWLNE 289

Query:   179 QKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLDGMDGRV 236
             QK+ A +S +SPVYLSLRLDGRVR SGVGYPPW AFVAQLPPVKG+W+GLLDGMDGRV
Sbjct:   290 QKKLANVSSDSPVYLSLRLDGRVRASGVGYPPWQAFVAQLPPVKGMWTGLLDGMDGRV 347

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

TAIR|locus:2024720 LPA1 "LOW PSII ACCUMULATION1" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 8.6e-26, Sum P(2) = 8.6e-26
 Identities = 37/131 (28%), Positives = 71/131 (54%)

Query:     2 FFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENK 61
             FFY AF A+  +     + +L+ A+     A ++ E     +I++  + +   L+  ENK
Sbjct:   202 FFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTGNAAINIGGIVVMVSLFLWENK 261

Query:    62 AKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPFT 121
              +  Q+ +++R+E+LS L LR+   +++ +  LR   R VI +G    +  + ++++ F 
Sbjct:   262 KEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVTLAMQKADRFR 321

Query:   122 ESLLERGVLVV 132
               LL RGVL+V
Sbjct:   322 TELLRRGVLLV 332

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010270 "photosystem II oxygen evolving complex assembly" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XIV.128.1 hypothetical protein (300 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	237
PLN03098	453	PLN03098, LPA1, LOW PSII ACCUMULATION1; Provisiona	7e-38
pfam11998	75	pfam11998, DUF3493, Protein of unknown function (D	1e-10

>gnl|CDD|215573 PLN03098, LPA1, LOW PSII ACCUMULATION1; Provisional

 Score =  136 bits (345), Expect = 7e-38
 Identities = 78/251 (31%), Positives = 131/251 (52%), Gaps = 25/251 (9%)

Query: 2   FFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENK 61
           FFY+AF A+  +     + +LI A+     A DV E     +I++  +  F  L+  ENK
Sbjct: 202 FFYVAFTAAAGISTFFTVPRLIRAIQGGDGAPDVLETAGNAAINIGGIVAFVSLFLWENK 261

Query: 62  AKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPFT 121
            +  Q+++++R+E+LS L +R+   +I+ +  LR I R VI +G    +  + +++E + 
Sbjct: 262 KEEEQMSQITRDETLSRLPVRLSTNRIVELVQLRDITRPVILAGTKESVTLAMQKAERYR 321

Query: 122 ESLLERGVLVV-------------------SFTTDGNIPSF--EFE---ESEEMKEFTRK 157
             LL+RGVL++                   S     ++PS   +FE   +S   K   + 
Sbjct: 322 TELLKRGVLLIPVVWGENKDPQPKKKGFGRSSKAAASLPSIGDDFEKRAQSAAAKSVLKG 381

Query: 158 RKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQ 217
            KR ++   V  +EW +W+ +Q+ + G++P   VY+ LRLDGRVR SG G P W   V +
Sbjct: 382 EKR-FKAEVVSPAEWERWIRDQQESEGVTPGEDVYIILRLDGRVRRSGRGMPEWQEIVKE 440

Query: 218 LPPVKGIWSGL 228
           LPP+  + S L
Sbjct: 441 LPPLDSLLSKL 451

Length = 453

>gnl|CDD|192909 pfam11998, DUF3493, Protein of unknown function (DUF3493)

 Score = 55.4 bits (134), Expect = 1e-10
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 1  MFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSREN 60
           F YLAF AS  LG  I + +LI          D+ E L  L+I + A++LF FL   E 
Sbjct: 22 RFLYLAFAASAGLGLFIMLFRLIA-------GPDLLETLPNLAIQIGALALFVFLLRWER 74

Query: 61 K 61
          K
Sbjct: 75 K 75

This family of proteins is functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length. Length = 75

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	100.0
PF11998	75	DUF3493: Protein of unknown function (DUF3493); In	99.74
PF13778	118	DUF4174: Domain of unknown function (DUF4174)	96.08
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	94.35
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	94.11
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	94.0
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	93.84
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	92.54
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	90.44
PTZ00056	199	glutathione peroxidase; Provisional	89.02
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	88.74
PLN02412	167	probable glutathione peroxidase	87.5
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	87.24
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	86.17
PTZ00256	183	glutathione peroxidase; Provisional	85.24
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	84.46
PRK10606	183	btuE putative glutathione peroxidase; Provisional	81.19

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=100.00  E-value=6.4e-78  Score=572.80  Aligned_cols=230  Identities=32%  Similarity=0.599  Sum_probs=214.8

Q ss_pred             CeehhhHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHhhhccchhHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhcccce
Q 026511            1 MFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLSNLK   80 (237)
Q Consensus         1 ~f~y~af~aSa~iG~~i~~~rl~aal~G~~~a~~l~~~l~nlaI~~gav~~~~~L~~~e~k~~~~qlari~Ree~L~rL~   80 (237)
                      ||||+||+|||+||+||+++|++++++|++++|+|+++++|||||+|++++|+|||+||+|++|+||+||+|||+|+||+
T Consensus       201 ~f~y~a~~asa~ig~~i~~~rl~~a~aG~~~ap~l~~~~~nlaI~igav~~f~~L~~~e~k~~e~q~~ri~Ree~L~rL~  280 (453)
T PLN03098        201 KFFYVAFTAAAGISTFFTVPRLIRAIQGGDGAPDVLETAGNAAINIGGIVAFVSLFLWENKKEEEQMSQITRDETLSRLP  280 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHhHhhcccchHHHHHHHHHHHHHHHhcccHHHHHHHHhhhhhccce
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEecCCceeehhhhcCcceEEEEecChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCC----CCccchHH------
Q 026511           81 LRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPS----FEFEESEE------  150 (237)
Q Consensus        81 V~l~~~r~v~l~~LR~~aRvVI~AG~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~----~~f~~~~~------  150 (237)
                      |+++++|+++|.|||+++|||||||++|||++||++||+||++|.+||||||||+|+++.+.    .+||.++.      
T Consensus       281 v~l~~~~~v~l~~LRg~~RvvIvAG~~e~v~~al~~ae~~r~~L~~r~VlvVPv~~~~~~~~~~~~~gfg~~s~~a~~~p  360 (453)
T PLN03098        281 VRLSTNRIVELVQLRDITRPVILAGTKESVTLAMQKAERYRTELLKRGVLLIPVVWGENKDPQPKKKGFGRSSKAAASLP  360 (453)
T ss_pred             EeccCCCEEeHHHhcCcceEEEEECCHHHHHHHHHHhHHHHHHHHHcCcEEEEEecCCCCccccccccccccchhhhcCC
Confidence            99999999999999999999999999999999999999999999999999999999877552    23552211      


Q ss_pred             -------------HHHHhhhhccceEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhhc
Q 026511          151 -------------MKEFTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQ  217 (237)
Q Consensus       151 -------------~~~~~~~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~e  217 (237)
                                   +.+.....++||+|+|+++++|++||+||++++||+|+++|||+|+||||||+||+|+|||++|++|
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~kr~~a~pv~~~~W~~wi~~q~~~~gv~~~~~vyi~lr~dGrVr~SG~G~P~W~~~v~e  440 (453)
T PLN03098        361 SIGDDFEKRAQSAAAKSVLKGEKRFKAEVVSPAEWERWIRDQQESEGVTPGEDVYIILRLDGRVRRSGRGMPEWQEIVKE  440 (453)
T ss_pred             CccchhhhhhHHHHHHHhhhcccceEEeecchHHHHHHHHHHHHhcCCCCCCceEEEEeeCCeEecCCCCCCCHHHHHHh
Confidence                         2223344678899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccccccC
Q 026511          218 LPPVKGIWSGLLD  230 (237)
Q Consensus       218 Lp~~~g~~s~~~d  230 (237)
                      |||+||||||+.+
T Consensus       441 LP~~~~~~~~~~~  453 (453)
T PLN03098        441 LPPLDSLLSKLER  453 (453)
T ss_pred             CCcchhhhhhccC
Confidence            9999999999864

>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised

Probab=99.74  E-value=1e-18  Score=131.37  Aligned_cols=54  Identities=44%  Similarity=0.703  Sum_probs=52.7

Q ss_pred             CeehhhHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHhhhccchhHHHHHHHHHHHHHHhh
Q 026511            1 MFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENK   61 (237)
Q Consensus         1 ~f~y~af~aSa~iG~~i~~~rl~aal~G~~~a~~l~~~l~nlaI~~gav~~~~~L~~~e~k   61 (237)
                      +|||+||+|||+||++|+++|+++       +++++|+++||+||+|++++|+|||+||+|
T Consensus        22 ~f~y~a~~aSa~iG~~i~~~rl~a-------~~~l~~~l~nlaI~igava~~~~L~~~d~k   75 (75)
T PF11998_consen   22 RFFYGAFGASAGIGLFIFLFRLIA-------GPDLNEALPNLAIQIGAVALFAFLFRWDRK   75 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHc-------CccHHHHhhhHhHHHHHHHHHHHHHHHhcC
Confidence            589999999999999999999999       899999999999999999999999999986

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.

>PF13778 DUF4174: Domain of unknown function (DUF4174)

Probab=96.08  E-value=0.072  Score=42.79  Aligned_cols=104  Identities=17%  Similarity=0.196  Sum_probs=67.7

Q ss_pred             ehhhhcCcceEEEEecC---hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhhccceEEee
Q 026511           90 SVNNLRGIARLVICSGP---ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQLTP  166 (237)
Q Consensus        90 ~l~~LR~~aRvVI~AG~---~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~~~~~a~P  166 (237)
                      +|.+++...|++|+..|   ..+...-+...+.-+..|.+|+|+|+.+.=++.....                  +...|
T Consensus         2 ~L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~------------------~~~~~   63 (118)
T PF13778_consen    2 PLDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPG------------------KPLSP   63 (118)
T ss_pred             ChhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCcccccc------------------CcCCH
Confidence            58899999999999886   2234444445555678899999999998543221111                  11111


Q ss_pred             cccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026511          167 VYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQL  218 (237)
Q Consensus       167 v~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~eL  218 (237)
                             .-+.+-.+.=+++++.--.|.+.|||.|--+-....+|.++.+.+
T Consensus        64 -------~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~I  108 (118)
T PF13778_consen   64 -------EDIQALRKRLRIPPGGFTVVLIGKDGGVKLRWPEPIDPEELFDTI  108 (118)
T ss_pred             -------HHHHHHHHHhCCCCCceEEEEEeCCCcEEEecCCCCCHHHHHHHH
Confidence                   111121222256665667889999999999977777799887653

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=94.35  E-value=1.4  Score=35.67  Aligned_cols=133  Identities=18%  Similarity=0.209  Sum_probs=80.0

Q ss_pred             hhhhhhcccceeEecCCceeehhhhcCcceEEE-EecChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccch
Q 026511           70 LSREESLSNLKLRVDEKKIISVNNLRGIARLVI-CSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEES  148 (237)
Q Consensus        70 i~Ree~L~rL~V~l~~~r~v~l~~LR~~aRvVI-~AG~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~  148 (237)
                      +.-......+.+.--+++.+++.++.+..-++. .+-.-.++...+.....+.+++.++++-++-+..+..        .
T Consensus        35 ~~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~--------~  106 (173)
T PRK03147         35 VQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDET--------E  106 (173)
T ss_pred             cCCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCC--------H
Confidence            334455556666555689999999987553333 3333345666667777788888888888888877532        1


Q ss_pred             HHHHHHhhhhccceEEeecccchHHHHHHHHH-HHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhhcCC
Q 026511          149 EEMKEFTRKRKRLWQLTPVYVSEWSKWLDEQK-RTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLP  219 (237)
Q Consensus       149 ~~~~~~~~~~~~~~~a~Pv~~~~W~~wi~eq~-~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~eLp  219 (237)
                      ++..+........   .|+..+.     ..+. +.-|+.. -+-.+.+..||+|...-.|..+.+.+.+.|.
T Consensus       107 ~~~~~~~~~~~~~---~~~~~d~-----~~~~~~~~~v~~-~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~  169 (173)
T PRK03147        107 LAVKNFVNRYGLT---FPVAIDK-----GRQVIDAYGVGP-LPTTFLIDKDGKVVKVITGEMTEEQLEEYLE  169 (173)
T ss_pred             HHHHHHHHHhCCC---ceEEECC-----cchHHHHcCCCC-cCeEEEECCCCcEEEEEeCCCCHHHHHHHHH
Confidence            2222222222222   2322111     1122 2225432 4778889999999999899888877766543

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=94.11  E-value=0.84  Score=35.66  Aligned_cols=124  Identities=16%  Similarity=0.177  Sum_probs=74.7

Q ss_pred             ceeEecCCceeehhhhcCcceEEEEe-cC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhh
Q 026511           79 LKLRVDEKKIISVNNLRGIARLVICS-GP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTR  156 (237)
Q Consensus        79 L~V~l~~~r~v~l~~LR~~aRvVI~A-G~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~  156 (237)
                      +.+.-.+++.+++.++++..-++..- +. -..+...+.....+.+.|.+.|+.||.|..+.         .+...++..
T Consensus         6 f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~---------~~~~~~~~~   76 (140)
T cd03017           6 FTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDS---------VESHAKFAE   76 (140)
T ss_pred             ccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCC---------HHHHHHHHH
Confidence            34443458999999999754333332 22 34677777777888888999999999988742         122233333


Q ss_pred             hhccceEEeecccchHHHHHHHHHHHcCCCCC--------CCeEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026511          157 KRKRLWQLTPVYVSEWSKWLDEQKRTAGISPE--------SPVYLSLRLDGRVRGSGVGYPPWNAFVAQL  218 (237)
Q Consensus       157 ~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~~--------~gvyi~lr~dGrVr~SG~G~PpW~~~v~eL  218 (237)
                      ...-.|   |+..+. ..=+-++.   |+...        .+-+++|..||+|+.+=.|..+++.+-+.|
T Consensus        77 ~~~~~~---~~l~D~-~~~~~~~~---gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~  139 (140)
T cd03017          77 KYGLPF---PLLSDP-DGKLAKAY---GVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL  139 (140)
T ss_pred             HhCCCc---eEEECC-ccHHHHHh---CCccccccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence            222233   332221 00111111   43221        257899999999999999999877766554

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=94.00  E-value=0.82  Score=36.24  Aligned_cols=117  Identities=21%  Similarity=0.295  Sum_probs=77.7

Q ss_pred             cceeEe--cCCceeehhhhcCcceEEEEecC--hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHH
Q 026511           78 NLKLRV--DEKKIISVNNLRGIARLVICSGP--ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKE  153 (237)
Q Consensus        78 rL~V~l--~~~r~v~l~~LR~~aRvVI~AG~--~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~  153 (237)
                      .+.+..  .+++.++++++++..-+|..-++  =..+...+...+.+.+...+.+|-+|-|..+.+.+         ..+
T Consensus         8 ~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~---------~~~   78 (146)
T PF08534_consen    8 DFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPP---------VRE   78 (146)
T ss_dssp             CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHH---------HHH
T ss_pred             CeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHH---------HHH
Confidence            445544  56999999999999877766555  77788888788888888899999999998743311         333


Q ss_pred             HhhhhccceEEeecccchHHHHHHHHHHHcCCC--------CCCCeEEEEeeCCeeecccCCCCc
Q 026511          154 FTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGIS--------PESPVYLSLRLDGRVRGSGVGYPP  210 (237)
Q Consensus       154 ~~~~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~--------~~~gvyi~lr~dGrVr~SG~G~Pp  210 (237)
                      +..+....|..   ..+. ..=+.++.   |+.        ..-+-++.+.+||+|+.++.|..+
T Consensus        79 ~~~~~~~~~~~---~~D~-~~~~~~~~---~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~  136 (146)
T PF08534_consen   79 FLKKYGINFPV---LSDP-DGALAKAL---GVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP  136 (146)
T ss_dssp             HHHHTTTTSEE---EEET-TSHHHHHT---TCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred             HHHhhCCCceE---Eech-HHHHHHHh---CCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence            33333333333   2121 00011111   332        145789999999999999999987

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=93.84  E-value=1.3  Score=35.74  Aligned_cols=124  Identities=17%  Similarity=0.189  Sum_probs=75.6

Q ss_pred             hhcccceeEecCCceeehhhhcCcceEEEEecC--hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHH
Q 026511           74 ESLSNLKLRVDEKKIISVNNLRGIARLVICSGP--ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEM  151 (237)
Q Consensus        74 e~L~rL~V~l~~~r~v~l~~LR~~aRvVI~AG~--~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~  151 (237)
                      +.+-.+.+.--+|+.+++.++++..-+|..-.+  -..+...+...+...+++.+.|+.||.|..+         ..++.
T Consensus         8 ~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d---------~~~~~   78 (154)
T PRK09437          8 DIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD---------KPEKL   78 (154)
T ss_pred             CcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC---------CHHHH
Confidence            334444444345789999999997655555432  3456666777788888899999999999763         12333


Q ss_pred             HHHhhhhccceEEeecccchHHHHHHHHHHHcCCCC-----------CCCeEEEEeeCCeeecccCCCCcHHH
Q 026511          152 KEFTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISP-----------ESPVYLSLRLDGRVRGSGVGYPPWNA  213 (237)
Q Consensus       152 ~~~~~~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~-----------~~gvyi~lr~dGrVr~SG~G~PpW~~  213 (237)
                      .++.....-.|.... +.+   .=+.++   -|+..           .....++|..||+|+.+=.|++|+..
T Consensus        79 ~~~~~~~~~~~~~l~-D~~---~~~~~~---~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~  144 (154)
T PRK09437         79 SRFAEKELLNFTLLS-DED---HQVAEQ---FGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNH  144 (154)
T ss_pred             HHHHHHhCCCCeEEE-CCC---chHHHH---hCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcchh
Confidence            444433334443321 211   111121   13211           01345899999999999999888765

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=92.54  E-value=2.2  Score=33.69  Aligned_cols=117  Identities=13%  Similarity=0.188  Sum_probs=70.9

Q ss_pred             cceeEecCCceeehhhhcCc-ceEEEEe-c-ChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHH
Q 026511           78 NLKLRVDEKKIISVNNLRGI-ARLVICS-G-PASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEF  154 (237)
Q Consensus        78 rL~V~l~~~r~v~l~~LR~~-aRvVI~A-G-~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~  154 (237)
                      .+.+.=.+++.++++++++. .-+++.. + --..+...+...+.+.+++.+.|+-||-|..+.         .+...++
T Consensus         9 ~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~---------~~~~~~~   79 (149)
T cd03018           9 DFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDS---------PFSLRAW   79 (149)
T ss_pred             CcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCC---------HHHHHHH
Confidence            33343335899999999994 3333342 2 245677777778888889999999888887631         1233444


Q ss_pred             hhhhccceEEeecccchH-HHHHHHHHHHcCCCCC-----CCeEEEEeeCCeeecccCCCC
Q 026511          155 TRKRKRLWQLTPVYVSEW-SKWLDEQKRTAGISPE-----SPVYLSLRLDGRVRGSGVGYP  209 (237)
Q Consensus       155 ~~~~~~~~~a~Pv~~~~W-~~wi~eq~~~Agv~~~-----~gvyi~lr~dGrVr~SG~G~P  209 (237)
                      .......|   |+..+.. ..=+-.+   =|+...     ...++++..||+|+.+..|..
T Consensus        80 ~~~~~~~~---~~~~D~~~~~~~~~~---~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~  134 (149)
T cd03018          80 AEENGLTF---PLLSDFWPHGEVAKA---YGVFDEDLGVAERAVFVIDRDGIIRYAWVSDD  134 (149)
T ss_pred             HHhcCCCc---eEecCCCchhHHHHH---hCCccccCCCccceEEEECCCCEEEEEEecCC
Confidence            43333333   4433332 1111111   143211     346799999999999999987

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=90.44  E-value=4.1  Score=31.81  Aligned_cols=118  Identities=15%  Similarity=0.115  Sum_probs=70.8

Q ss_pred             eEecCCceeehhhhcCcceEEEEe-cChhH-HHHHHhhchhhHHHHhhcC---cEEEEEEeCCCCCCCCccchHHHHHHh
Q 026511           81 LRVDEKKIISVNNLRGIARLVICS-GPASY-IMESFKRSEPFTESLLERG---VLVVSFTTDGNIPSFEFEESEEMKEFT  155 (237)
Q Consensus        81 V~l~~~r~v~l~~LR~~aRvVI~A-G~~e~-V~~al~~a~~~~~~L~~r~---VlVVPv~~~g~~~~~~f~~~~~~~~~~  155 (237)
                      +.-.+++.+++.++++..-+++.. ..-.. +...+...+.+.+++.+++   |-+|-|..+...++     .+..+++.
T Consensus         7 l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~-----~~~~~~~~   81 (142)
T cd02968           7 LTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDT-----PEVLKAYA   81 (142)
T ss_pred             EEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCC-----HHHHHHHH
Confidence            333458899999998876665543 33333 7778888899999998875   99999988643111     12334444


Q ss_pred             hhhccceEEeecccchHHHHHHHHHHHcCCCC----------CCCeEEEEeeCCeeecc
Q 026511          156 RKRKRLWQLTPVYVSEWSKWLDEQKRTAGISP----------ESPVYLSLRLDGRVRGS  204 (237)
Q Consensus       156 ~~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~----------~~gvyi~lr~dGrVr~S  204 (237)
                      ..-...|....-..++...- .++...-...+          ..+.++++..+|+|+..
T Consensus        82 ~~~~~~~~~l~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~  139 (142)
T cd02968          82 KAFGPGWIGLTGTPEEIEAL-AKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRY  139 (142)
T ss_pred             HHhCCCcEEEECCHHHHHHH-HHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEe
Confidence            44335676655443323321 11221111111          13578999999999864

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PTZ00056 glutathione peroxidase; Provisional

Probab=89.02  E-value=8.3  Score=33.32  Aligned_cols=143  Identities=11%  Similarity=0.174  Sum_probs=80.7

Q ss_pred             hcccceeEecCCceeehhhhcCcceEEE-EecChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHH
Q 026511           75 SLSNLKLRVDEKKIISVNNLRGIARLVI-CSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKE  153 (237)
Q Consensus        75 ~L~rL~V~l~~~r~v~l~~LR~~aRvVI-~AG~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~  153 (237)
                      .+-.+.+.-.+|+.++|+++||..-+|. .|---..+..-+...+.+.+++.+.|+.||-|..+.- ...+.+..++..+
T Consensus        18 ~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~-~~~e~d~~e~~~~   96 (199)
T PTZ00056         18 SIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQF-LNQEFPNTKDIRK   96 (199)
T ss_pred             CCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhc-cCCCCCCHHHHHH
Confidence            4455555545689999999998532222 2222233445566677788888899999988876321 0112233345556


Q ss_pred             HhhhhccceEEe-ecccc------hHHHHHHHHHHHc-CCCC---C---CCeEEEEeeCCeeecccCCCCcHHHHhhcCC
Q 026511          154 FTRKRKRLWQLT-PVYVS------EWSKWLDEQKRTA-GISP---E---SPVYLSLRLDGRVRGSGVGYPPWNAFVAQLP  219 (237)
Q Consensus       154 ~~~~~~~~~~a~-Pv~~~------~W~~wi~eq~~~A-gv~~---~---~gvyi~lr~dGrVr~SG~G~PpW~~~v~eLp  219 (237)
                      +.....-.|-.. ++..+      .|+ |+.++.... +...   .   ....+.|.+||+|+.+=.|..++.++.+.+.
T Consensus        97 f~~~~~~~fpvl~d~~v~g~~~~~l~~-~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~  175 (199)
T PTZ00056         97 FNDKNKIKYNFFEPIEVNGENTHELFK-FLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIA  175 (199)
T ss_pred             HHHHcCCCceeeeeeeccCCccCHHHH-HHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHH
Confidence            555444344321 11112      233 333333221 2111   0   1147899999999998888888877766543

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=88.74  E-value=8.7  Score=30.20  Aligned_cols=110  Identities=21%  Similarity=0.245  Sum_probs=66.5

Q ss_pred             ecCCceeehhhhcCcceEEEEec-ChhHHHHHHhhchhhHHHHhhc--CcEEEEEEeCCCCCCCCccchHHHHHHhhhhc
Q 026511           83 VDEKKIISVNNLRGIARLVICSG-PASYIMESFKRSEPFTESLLER--GVLVVSFTTDGNIPSFEFEESEEMKEFTRKRK  159 (237)
Q Consensus        83 l~~~r~v~l~~LR~~aRvVI~AG-~~e~V~~al~~a~~~~~~L~~r--~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~  159 (237)
                      ++.++++++.+|++..=+|..-+ .=..+.+.+...+.+.+++.+.  ++-|+.|..+.+        .++..++.....
T Consensus         4 ~~~~~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~--------~~~~~~~~~~~~   75 (132)
T cd02964           4 LDGEGVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRS--------EESFNEYFSEMP   75 (132)
T ss_pred             ccCCccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCC--------HHHHHHHHhcCC
Confidence            34458999999999664444433 3455666666667777777765  788888877532        122233333222


Q ss_pred             cceEEeecccchHHHHHHHHHHH-cCCCCCCCeEEEEeeCCeeecccC
Q 026511          160 RLWQLTPVYVSEWSKWLDEQKRT-AGISPESPVYLSLRLDGRVRGSGV  206 (237)
Q Consensus       160 ~~~~a~Pv~~~~W~~wi~eq~~~-Agv~~~~gvyi~lr~dGrVr~SG~  206 (237)
                       .|...|.. ++   ....++.. -|+. .-+.++.+..||+|+.+..
T Consensus        76 -~~~~~~~~-d~---~~~~~~~~~~~v~-~iPt~~lid~~G~iv~~~~  117 (132)
T cd02964          76 -PWLAVPFE-DE---ELRELLEKQFKVE-GIPTLVVLKPDGDVVTTNA  117 (132)
T ss_pred             -CeEeeccC-cH---HHHHHHHHHcCCC-CCCEEEEECCCCCEEchhH
Confidence             67777754 22   12223322 2542 2588999999999997654

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>PLN02412 probable glutathione peroxidase

Probab=87.50  E-value=12  Score=31.06  Aligned_cols=138  Identities=14%  Similarity=0.185  Sum_probs=77.8

Q ss_pred             ccceeEecCCceeehhhhcCcceEEEE-ecChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHH-H
Q 026511           77 SNLKLRVDEKKIISVNNLRGIARLVIC-SGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKE-F  154 (237)
Q Consensus        77 ~rL~V~l~~~r~v~l~~LR~~aRvVI~-AG~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~-~  154 (237)
                      -.+.+.-.+++.++|+++++..-+|.. |-.-..+..-+...+.+.+++.+.|+.|+-|..+.-.. .+.+..+++.+ +
T Consensus        10 pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~-~~~~~~~~~~~~~   88 (167)
T PLN02412         10 YDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLG-QEPGSNEEIQQTV   88 (167)
T ss_pred             CceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccccccc-CCCCCHHHHHHHH
Confidence            334444446899999999985433333 44444555566777889999999999999998742110 01111122222 2


Q ss_pred             hhhhccceEEe-eccc------chHHHHHHHHHHHcCCC----CCCCeEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026511          155 TRKRKRLWQLT-PVYV------SEWSKWLDEQKRTAGIS----PESPVYLSLRLDGRVRGSGVGYPPWNAFVAQL  218 (237)
Q Consensus       155 ~~~~~~~~~a~-Pv~~------~~W~~wi~eq~~~Agv~----~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~eL  218 (237)
                      ..+..-.|-.. ++++      ..+. |+..+.  .|..    ...+.-++|..||+|..+=.|..++.++...+
T Consensus        89 ~~~~~~~fpvl~~~d~~g~~~~~~~~-~~~~~~--~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i  160 (167)
T PLN02412         89 CTRFKAEFPIFDKVDVNGKNTAPLYK-YLKAEK--GGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDI  160 (167)
T ss_pred             HHccCCCCceEeEEeeCCCCCCHHHH-HHHhhC--CCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHH
Confidence            22212222221 1111      1343 333322  1211    11356789999999999999999988776544

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=87.24  E-value=9.1  Score=29.64  Aligned_cols=110  Identities=15%  Similarity=0.197  Sum_probs=67.2

Q ss_pred             CCceeehhhhcCcceEEEEe-c-ChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhh-ccc
Q 026511           85 EKKIISVNNLRGIARLVICS-G-PASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKR-KRL  161 (237)
Q Consensus        85 ~~r~v~l~~LR~~aRvVI~A-G-~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~-~~~  161 (237)
                      +++.+++.++++..-+|..- + .-..+...+...+.+.++|.+.++-+|-|..+.         .+...++...- ...
T Consensus        11 ~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~---------~~~~~~~~~~~~~~~   81 (140)
T cd02971          11 DGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDS---------PFSHKAWAEKEGGLN   81 (140)
T ss_pred             CCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC---------HHHHHHHHhcccCCC
Confidence            47899999997654444332 2 345666777777888888888898888887631         12233333322 333


Q ss_pred             eEEeecccchHHHHHHHHHHHcCCCCC--------CCeEEEEeeCCeeecccCCCCc
Q 026511          162 WQLTPVYVSEWSKWLDEQKRTAGISPE--------SPVYLSLRLDGRVRGSGVGYPP  210 (237)
Q Consensus       162 ~~a~Pv~~~~W~~wi~eq~~~Agv~~~--------~gvyi~lr~dGrVr~SG~G~Pp  210 (237)
                      |   |+-.+.... +.+   .-|+...        .+-.++|..+|||+.+..|..|
T Consensus        82 ~---~~l~D~~~~-~~~---~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~  131 (140)
T cd02971          82 F---PLLSDPDGE-FAK---AYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLP  131 (140)
T ss_pred             c---eEEECCChH-HHH---HcCCccccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence            4   333344432 111   2243211        2367899999999999999887

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=86.17  E-value=15  Score=30.27  Aligned_cols=117  Identities=14%  Similarity=0.075  Sum_probs=69.3

Q ss_pred             ceeehhhhcCcceEEEEe-cC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhh-------
Q 026511           87 KIISVNNLRGIARLVICS-GP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRK-------  157 (237)
Q Consensus        87 r~v~l~~LR~~aRvVI~A-G~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~-------  157 (237)
                      +.++|.++++..-++... ++ -..+...+...+.+.+++.+.|+-|+-|..+..         +...++...       
T Consensus        20 ~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~---------~~~~~~~~~~~~~~~~   90 (173)
T cd03015          20 KEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSH---------FSHLAWRNTPRKEGGL   90 (173)
T ss_pred             eEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCH---------HHHHHHHHhhhhhCCc
Confidence            789999999853333332 22 346777888889999999999999998876421         111111111       


Q ss_pred             hccceEEeecccchHHHHHHHHHHHcCCCC-----CCCeEEEEeeCCeeecccCCCC----cHHHHhhcCC
Q 026511          158 RKRLWQLTPVYVSEWSKWLDEQKRTAGISP-----ESPVYLSLRLDGRVRGSGVGYP----PWNAFVAQLP  219 (237)
Q Consensus       158 ~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~-----~~gvyi~lr~dGrVr~SG~G~P----pW~~~v~eLp  219 (237)
                      ..-.|   |+-.+.    -.+..+.-|+..     ..+-+++|..||+|+.+-++..    +..++++.|.
T Consensus        91 ~~~~f---~~l~D~----~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~  154 (173)
T cd03015          91 GKINF---PLLADP----KKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLD  154 (173)
T ss_pred             cCcce---eEEECC----chhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHH
Confidence            01122   332222    112222225431     1357899999999999986643    4556665553

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PTZ00256 glutathione peroxidase; Provisional

Probab=85.24  E-value=21  Score=30.01  Aligned_cols=143  Identities=12%  Similarity=0.221  Sum_probs=83.6

Q ss_pred             hhhhcccceeEecCCceeehhhhcCcceEEEE--ecChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchH
Q 026511           72 REESLSNLKLRVDEKKIISVNNLRGIARLVIC--SGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESE  149 (237)
Q Consensus        72 Ree~L~rL~V~l~~~r~v~l~~LR~~aRvVI~--AG~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~  149 (237)
                      .++.+-.+.+.-.+|+.++|+++||..-++++  |--=..+.+-+...+.+.+++.++|+-||-|..+.-... +-...+
T Consensus        16 ~~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~-~~~~~~   94 (183)
T PTZ00256         16 PTKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQ-EPWDEP   94 (183)
T ss_pred             CCCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEeccccccc-CCCCHH
Confidence            34566666666556899999999986433333  222244556666777788888899999998876321000 111112


Q ss_pred             HHHHHhhhh-ccceEEeeccc---------chHHHHHHHHHHHcCCCC----CCC---eEEEEeeCCeeecccCCCCcHH
Q 026511          150 EMKEFTRKR-KRLWQLTPVYV---------SEWSKWLDEQKRTAGISP----ESP---VYLSLRLDGRVRGSGVGYPPWN  212 (237)
Q Consensus       150 ~~~~~~~~~-~~~~~a~Pv~~---------~~W~~wi~eq~~~Agv~~----~~g---vyi~lr~dGrVr~SG~G~PpW~  212 (237)
                      +..++..+. .-.|   |+..         ..=-+|+.++....+.+.    .-+   -.+++.+||+|+.+=.|..++.
T Consensus        95 ~~~~f~~~~~~~~f---pv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~  171 (183)
T PTZ00256         95 EIKEYVQKKFNVDF---PLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPN  171 (183)
T ss_pred             HHHHHHHHhcCCCC---CCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHH
Confidence            333332211 2222   3321         122356777654322111    113   3479999999999988999998


Q ss_pred             HHhhcC
Q 026511          213 AFVAQL  218 (237)
Q Consensus       213 ~~v~eL  218 (237)
                      .+.+++
T Consensus       172 ~l~~~I  177 (183)
T PTZ00256        172 EMIQDI  177 (183)
T ss_pred             HHHHHH
Confidence            876654

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=84.46  E-value=11  Score=29.33  Aligned_cols=111  Identities=16%  Similarity=0.117  Sum_probs=64.8

Q ss_pred             CceeehhhhcCcceEEEEe-cChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhhccceEE
Q 026511           86 KKIISVNNLRGIARLVICS-GPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQL  164 (237)
Q Consensus        86 ~r~v~l~~LR~~aRvVI~A-G~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~~~~~a  164 (237)
                      ++.+++.++++..-++..- -.-..+.+.+...+.+.+++.++++-|+.|.....+.  + ...+...++.....-.   
T Consensus        13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~--~-~~~~~~~~~~~~~~~~---   86 (126)
T cd03012          13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAF--E-RDLANVKSAVLRYGIT---   86 (126)
T ss_pred             CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCcccc--c-cCHHHHHHHHHHcCCC---
Confidence            6789999998865444433 3345567778888999999999999999886521100  0 1122333333332222   


Q ss_pred             eecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCC
Q 026511          165 TPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVG  207 (237)
Q Consensus       165 ~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G  207 (237)
                      .|+..+. ..=+.+   .-|+. .-+-++++.+||+|+.+=.|
T Consensus        87 ~p~~~D~-~~~~~~---~~~v~-~~P~~~vid~~G~v~~~~~G  124 (126)
T cd03012          87 YPVANDN-DYATWR---AYGNQ-YWPALYLIDPTGNVRHVHFG  124 (126)
T ss_pred             CCEEECC-chHHHH---HhCCC-cCCeEEEECCCCcEEEEEec
Confidence            3443221 111111   11432 24788899999999987665

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=81.19  E-value=14  Score=31.78  Aligned_cols=58  Identities=10%  Similarity=0.303  Sum_probs=39.4

Q ss_pred             cceeEecCCceeehhhhcCcceEEE-EecChhHHHHHHhhchhhHHHHhhcCcEEEEEEe
Q 026511           78 NLKLRVDEKKIISVNNLRGIARLVI-CSGPASYIMESFKRSEPFTESLLERGVLVVSFTT  136 (237)
Q Consensus        78 rL~V~l~~~r~v~l~~LR~~aRvVI-~AG~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~  136 (237)
                      .+.+.--+|+.++|+++||..=+|. .|-.-.+. ..+...+.+.+++.+.|+.|+-|..
T Consensus         7 ~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~-~q~~~L~~L~~~y~~~gl~Vlg~p~   65 (183)
T PRK10606          7 TTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLT-PQYEQLENIQKAWADQGFVVLGFPC   65 (183)
T ss_pred             CcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCc-HHHHHHHHHHHHHhhCCeEEEEeec
Confidence            3444444588999999999543333 22222233 3477788888899999999988876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	237
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 9e-05
 Identities = 37/170 (21%), Positives = 58/170 (34%), Gaps = 60/170 (35%)

Query: 70  LSREESLSNLKLRVDEKKIISV-NNLRGIARL--VICSGPASYIMESFKRSEPFTESLLE 126
           LS+EE        +D   II   + + G  RL   + S     +       + F E +L 
Sbjct: 46  LSKEE--------IDH--IIMSKDAVSGTLRLFWTLLSKQEEMV-------QKFVEEVLR 88

Query: 127 R--GVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQLTPVYVSEWSKWLDEQKRTAG 184
                L+    T+   PS         + +  +R RL+    V+           K    
Sbjct: 89  INYKFLMSPIKTEQRQPSMM------TRMYIEQRDRLYNDNQVFA----------KYN-- 130

Query: 185 ISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLDGMDG 234
           +S   P YL LR                A + +L P K +   L+DG+ G
Sbjct: 131 VSRLQP-YLKLR---------------QA-LLELRPAKNV---LIDGVLG 160

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	96.31
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	96.19
2lrt_A	152	Uncharacterized protein; structural genomics, thio	96.12
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	95.37
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	95.27
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	95.25
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	95.15
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	94.99
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	94.98
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	94.88
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	94.84
3raz_A	151	Thioredoxin-related protein; structural genomics,	94.83
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	94.78
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	94.76
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	94.45
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	94.24
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	94.17
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	93.82
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	93.77
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	93.71
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	93.45
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	93.24
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	93.19
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	93.17
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	92.79
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	92.63
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	92.53
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	92.35
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	92.26
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	91.91
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	91.9
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	91.68
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	91.49
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	91.49
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	91.43
3me7_A	170	Putative uncharacterized protein; electron transfe	91.42
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	91.37
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	91.32
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	91.24
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	91.17
4evm_A	138	Thioredoxin family protein; structural genomics, n	90.97
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	90.87
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	90.62
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	90.47
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	90.37
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	90.01
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	89.83
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	89.75
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	89.06
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	88.91
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	88.83
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	88.82
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	88.78
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	88.46
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	88.15
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	87.89
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	87.75
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	87.58
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	87.48
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	87.42
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	87.27
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	87.27
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	87.26
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	86.68
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	85.74
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	84.58
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	84.05
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	83.66
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	82.53
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	82.47
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	82.45
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	82.28
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	80.84

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=96.31  E-value=0.079  Score=40.02  Aligned_cols=125  Identities=17%  Similarity=0.219  Sum_probs=77.3

Q ss_pred             hcccceeEecCCceeehhhhcCcceEEEEec-ChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHH
Q 026511           75 SLSNLKLRVDEKKIISVNNLRGIARLVICSG-PASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKE  153 (237)
Q Consensus        75 ~L~rL~V~l~~~r~v~l~~LR~~aRvVI~AG-~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~  153 (237)
                      .+-.+.+.- +++.+++.++++..-+|...+ .=.++...+...+.+.+++.+.|+.+|.|..+.+        .+...+
T Consensus         8 ~~P~f~l~~-~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~--------~~~~~~   78 (152)
T 3gl3_A            8 KAPDFALPG-KTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAK--------TGDAMK   78 (152)
T ss_dssp             BCCCCEEEB-SSSEEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSS--------HHHHHH
T ss_pred             cCCceEeeC-CCCeEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCC--------HHHHHH
Confidence            344455555 788999999998754444433 3356777788888889999999999999987532        112222


Q ss_pred             HhhhhccceEEeecccchHHHHHHHHH-HHcCCCCCCCeEEEEeeCCeeecccCCCCcH--HHHhhc
Q 026511          154 FTRKRKRLWQLTPVYVSEWSKWLDEQK-RTAGISPESPVYLSLRLDGRVRGSGVGYPPW--NAFVAQ  217 (237)
Q Consensus       154 ~~~~~~~~~~a~Pv~~~~W~~wi~eq~-~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW--~~~v~e  217 (237)
                      +.......|.   +..+.-.     ++ +.-|+. .-+.++.+..||+|+.+-.|..++  .++.+.
T Consensus        79 ~~~~~~~~~~---~~~d~~~-----~~~~~~~v~-~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~  136 (152)
T 3gl3_A           79 FLAQVPAEFT---VAFDPKG-----QTPRLYGVK-GMPTSFLIDRNGKVLLQHVGFRPADKEALEQQ  136 (152)
T ss_dssp             HHHHSCCCSE---EEECTTC-----HHHHHTTCC-SSSEEEEECTTSBEEEEEESCCTTTHHHHHHH
T ss_pred             HHHHcCCCCc---eeECCcc-----hhHHHcCCC-CCCeEEEECCCCCEEEEEccCCCcCHHHHHHH
Confidence            2222222222   2111110     12 222542 257899999999999999998776  344443

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=96.19  E-value=0.028  Score=42.02  Aligned_cols=131  Identities=15%  Similarity=0.177  Sum_probs=76.3

Q ss_pred             hcccceeEecCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHH
Q 026511           75 SLSNLKLRVDEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKE  153 (237)
Q Consensus        75 ~L~rL~V~l~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~  153 (237)
                      .+-.+.+.-.+++.+++.++++..-+|...++ =.++...+...+.+.+.+.+.++.+|.|..+.+        .+...+
T Consensus        10 ~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~--------~~~~~~   81 (148)
T 3hcz_A           10 KAPNLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERK--------DEEWLK   81 (148)
T ss_dssp             BCCCCCCBCTTSCBCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSS--------SHHHHH
T ss_pred             cCCceEEecCCCCEEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCC--------HHHHHH
Confidence            33344444446899999999886544444332 234555556666688888888999999988532        112222


Q ss_pred             Hhhhhccc-eEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhhcCC
Q 026511          154 FTRKRKRL-WQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLP  219 (237)
Q Consensus       154 ~~~~~~~~-~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~eLp  219 (237)
                      +....... |.... +.+.  .  .+-.+.-|+. .-+.++.+..||+|..+-.|.+...++++++.
T Consensus        82 ~~~~~~~~~~~~~~-d~~~--~--~~~~~~~~i~-~~P~~~lid~~G~i~~~~~g~~~~~~~l~~l~  142 (148)
T 3hcz_A           82 FIRSKKIGGWLNVR-DSKN--H--TDFKITYDIY-ATPVLYVLDKNKVIIAKRIGYENLDDFLVQYE  142 (148)
T ss_dssp             HHHHHTCTTSEEEE-CTTC--C--CCHHHHHCCC-SSCEEEEECTTCBEEEESCCGGGHHHHHHHHH
T ss_pred             HHHHcCCCCceEEe-cccc--c--hhHHHhcCcC-CCCEEEEECCCCcEEEecCCHHHHHHHHHHHH
Confidence            22221111 21111 1000  0  0011112442 25789999999999999999999999887753

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=96.12  E-value=0.11  Score=40.15  Aligned_cols=127  Identities=9%  Similarity=0.097  Sum_probs=78.8

Q ss_pred             cccceeEecCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHH
Q 026511           76 LSNLKLRVDEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEF  154 (237)
Q Consensus        76 L~rL~V~l~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~  154 (237)
                      +-.+.+.-.+|+.+++.++++..-++....+ -..+...+...+.+.+++.+.|+.||-|..+..        .+...++
T Consensus        15 ~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~--------~~~~~~~   86 (152)
T 2lrt_A           15 IIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGD--------EHFWKTS   86 (152)
T ss_dssp             SCCCCEEBTTSCEECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCC--------HHHHHHH
T ss_pred             CCCeEEEcCCCCEEeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCC--------HHHHHHH
Confidence            3344444456899999999986544444333 345666777777888889889999999988542        1122222


Q ss_pred             hhhhccceEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhhc
Q 026511          155 TRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQ  217 (237)
Q Consensus       155 ~~~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~e  217 (237)
                      ..  +-.|.... +.+....=+.+   .-|+. .-+.++.+..||+|+.+-.|..+|.+.+..
T Consensus        87 ~~--~~~~~~~~-d~~~~~~~~~~---~~~v~-~~P~~~lid~~G~i~~~~~g~~~~e~~~~~  142 (152)
T 2lrt_A           87 AD--NLPWVCVR-DANGAYSSYIS---LYNVT-NLPSVFLVNRNNELSARGENIKDLDEAIKK  142 (152)
T ss_dssp             HT--TCSSEEEE-CSSGGGCHHHH---HHTCC-SCSEEEEEETTTEEEEETTTCSCHHHHHHH
T ss_pred             Hh--CCCceEEE-CCCCcchHHHH---HcCcc-cCceEEEECCCCeEEEecCCHHHHHHHHHH
Confidence            21  12232211 22222111111   22443 257899999999999999999999988765

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=95.37  E-value=0.49  Score=35.66  Aligned_cols=125  Identities=15%  Similarity=0.159  Sum_probs=76.5

Q ss_pred             cceeEecCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhh
Q 026511           78 NLKLRVDEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTR  156 (237)
Q Consensus        78 rL~V~l~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~  156 (237)
                      .+.+.-.+|+.+++.++++..-+|....+ =.++...+...+.+.+.+.+.++-++.|..+.+        .+...++..
T Consensus         8 ~~~l~~~~g~~~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~--------~~~~~~~~~   79 (151)
T 2f9s_A            8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGES--------KIAVHNFMK   79 (151)
T ss_dssp             CCEEECTTCCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCC--------HHHHHHHHH
T ss_pred             cceeEcCCCCEEEHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCC--------HHHHHHHHH
Confidence            33444345899999999886544444432 346666777777788888888999999988532        122233332


Q ss_pred             hhccceEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026511          157 KRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQL  218 (237)
Q Consensus       157 ~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~eL  218 (237)
                      ...-.   .|+..+.-.    +-.+.-|+. .-+.++.+..||+|+.+-.|.++-..+.+.|
T Consensus        80 ~~~~~---~~~~~d~~~----~~~~~~~v~-~~P~~~lid~~G~i~~~~~G~~~~~~l~~~l  133 (151)
T 2f9s_A           80 SYGVN---FPVVLDTDR----QVLDAYDVS-PLPTTFLINPEGKVVKVVTGTMTESMIHDYM  133 (151)
T ss_dssp             HHTCC---SCEEEETTS----HHHHHTTCC-SSCEEEEECTTSEEEEEEESCCCHHHHHHHH
T ss_pred             HcCCC---ceEEECCch----HHHHhcCCC-CCCeEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence            22222   233222211    111222542 2578899999999999988988776665543

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=95.27  E-value=0.48  Score=35.98  Aligned_cols=130  Identities=15%  Similarity=0.167  Sum_probs=79.3

Q ss_pred             hcccceeEecCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHH
Q 026511           75 SLSNLKLRVDEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKE  153 (237)
Q Consensus        75 ~L~rL~V~l~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~  153 (237)
                      .+-.+.+.-.+++.+++.++++..-+|...++ =.++...+...+.+.+++.+.++.+|.|..+.+        .+...+
T Consensus        13 ~~p~~~l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~--------~~~~~~   84 (165)
T 3or5_A           13 PAPSFSGVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQ--------LPNVKN   84 (165)
T ss_dssp             BCCCCEEECTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCC--------HHHHHH
T ss_pred             CCCCceeeCCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCC--------HHHHHH
Confidence            33444555456899999999986555544433 356777777778888889999999999988531        122233


Q ss_pred             HhhhhccceEEeecccchHHHHHHHHHHHc---CCCCCCCeEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026511          154 FTRKRKRLWQLTPVYVSEWSKWLDEQKRTA---GISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQL  218 (237)
Q Consensus       154 ~~~~~~~~~~a~Pv~~~~W~~wi~eq~~~A---gv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~eL  218 (237)
                      +.....-.|...- +.+   + +.++....   |+. .-+.++.+..||+|+.+-.|..+-.++.+.|
T Consensus        85 ~~~~~~~~~~~~~-~~~---~-~~~~~~~~~~~~i~-~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  146 (165)
T 3or5_A           85 YMKTQGIIYPVMM-ATP---E-LIRAFNGYIDGGIT-GIPTSFVIDASGNVSGVIVGPRSKADFDRIV  146 (165)
T ss_dssp             HHHHHTCCSCEEE-CCH---H-HHHHHHTTSTTCSC-SSSEEEEECTTSBEEEEECSCCCHHHHHHHH
T ss_pred             HHHHcCCCCceEe-cCH---H-HHHHHhhhhccCCC-CCCeEEEECCCCcEEEEEcCCCCHHHHHHHH
Confidence            3322222332211 111   1 11111111   332 2578999999999999999988877666544

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=95.25  E-value=0.29  Score=37.24  Aligned_cols=128  Identities=14%  Similarity=0.125  Sum_probs=77.5

Q ss_pred             cceeEecCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhh
Q 026511           78 NLKLRVDEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTR  156 (237)
Q Consensus        78 rL~V~l~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~  156 (237)
                      .+.+.-.+|+.+++.++++..-+|...++ =.++...+...+.+.+++.+.++-|+-|..+.+        .+...++..
T Consensus        11 ~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~--------~~~~~~~~~   82 (152)
T 2lrn_A           11 AITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRR--------EEDWKKAIE   82 (152)
T ss_dssp             CCEEECSSSCEEESGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSC--------HHHHHHHHH
T ss_pred             CceeEcCCCCEEeHHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCC--------HHHHHHHHH
Confidence            34444445899999999987555544433 345677777777788888888999999987521        223333333


Q ss_pred             hhccceEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026511          157 KRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQL  218 (237)
Q Consensus       157 ~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~eL  218 (237)
                      .....|.... +...|..   +-.+.-|+. .-+.++.+..||+|+.+..+.....+.+++|
T Consensus        83 ~~~~~~~~~~-d~~~~~~---~~~~~~~v~-~~P~~~lid~~G~i~~~~~~~~~l~~~l~~l  139 (152)
T 2lrn_A           83 EDKSYWNQVL-LQKDDVK---DVLESYCIV-GFPHIILVDPEGKIVAKELRGDDLYNTVEKF  139 (152)
T ss_dssp             HHTCCSEEEE-ECHHHHH---HHHHHTTCC-SSCEEEEECTTSEEEEECCCTTHHHHHHHHH
T ss_pred             HhCCCCeEEe-cccchhH---HHHHHhCCC-cCCeEEEECCCCeEEEeeCCHHHHHHHHHHH
Confidence            3333443222 2222222   222223553 2578899999999999987655565555543

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=95.15  E-value=0.12  Score=39.02  Aligned_cols=127  Identities=12%  Similarity=0.089  Sum_probs=75.1

Q ss_pred             hcccceeEecCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchh---hHHHHhhcCcEEEEEEeCCCCCCCCccchHH
Q 026511           75 SLSNLKLRVDEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEP---FTESLLERGVLVVSFTTDGNIPSFEFEESEE  150 (237)
Q Consensus        75 ~L~rL~V~l~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~---~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~  150 (237)
                      .+-.+.+.-.+|+.+++.++++..-++...++ =.++...+...+.   +.+.+.+.++.||-|..+.+        .+.
T Consensus        10 ~ap~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~--------~~~   81 (142)
T 3eur_A           10 KALNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEE--------LDE   81 (142)
T ss_dssp             BCCCCEEEETTSCEEETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSC--------HHH
T ss_pred             ccCCcEEEcCCCCEeeHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCC--------HHH
Confidence            33445555567899999999995444444332 3556666666666   88888889999999887532        122


Q ss_pred             HHHHhhhhccceEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHh
Q 026511          151 MKEFTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFV  215 (237)
Q Consensus       151 ~~~~~~~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v  215 (237)
                      ..++...-...|.. ..+.+...    +-.+.-++. .-+-++.+.+||+|..++.|...-.+++
T Consensus        82 ~~~~~~~~~~~~~~-~~d~~~~~----~~~~~~~v~-~~P~~~lid~~G~i~~~~~~~~~l~~~l  140 (142)
T 3eur_A           82 WKKHRNDFAKEWTN-GYDKELVI----KNKNLYDLR-AIPTLYLLDKNKTVLLKDATLQKVEQYL  140 (142)
T ss_dssp             HHHHGGGSCTTSEE-EECTTCHH----HHTTCSCCT-TCSEEEEECTTCBEEEEEECHHHHHHHH
T ss_pred             HHHHHHhccccccc-ccCccchh----hhhhhcCCC-cCCeEEEECCCCcEEecCCCHHHHHHHH
Confidence            33333333334432 12222210    001112432 2578999999999999998754444443

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=94.99  E-value=0.13  Score=38.18  Aligned_cols=135  Identities=11%  Similarity=0.098  Sum_probs=82.1

Q ss_pred             hhhhhhcccceeEecCCceeehh--hhcCcceEEEEecC-hhHHHHHHhhchhhHHHH-hhcCcEEEEEEeCCCCCCCCc
Q 026511           70 LSREESLSNLKLRVDEKKIISVN--NLRGIARLVICSGP-ASYIMESFKRSEPFTESL-LERGVLVVSFTTDGNIPSFEF  145 (237)
Q Consensus        70 i~Ree~L~rL~V~l~~~r~v~l~--~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L-~~r~VlVVPv~~~g~~~~~~f  145 (237)
                      +.-++.+-.+.+.-.+++.+++.  ++++..-++...++ =.++...+...+.+.+++ .+.|+.++.|..+..      
T Consensus         5 ~~~g~~~p~~~l~~~~g~~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~------   78 (148)
T 3fkf_A            5 VTVGKSAPYFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDID------   78 (148)
T ss_dssp             CCTTSBCCCCCEEBTTSCEECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSC------
T ss_pred             ccCCCcCCCeEeeCCCCCEEeccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCC------
Confidence            34445556666666678999999  99886555544432 234666677777788888 888999999988542      


Q ss_pred             cchHHHHHHhhhhccceEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhhc
Q 026511          146 EESEEMKEFTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQ  217 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~e  217 (237)
                        .+...++.....-.|.... +...|..-+.+   .-|+. .-+.++.+..||+|..+..+.....+.+.+
T Consensus        79 --~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~---~~~v~-~~P~~~lid~~G~i~~~~~~~~~l~~~l~~  143 (148)
T 3fkf_A           79 --REAWETAIKKDTLSWDQVC-DFTGLSSETAK---QYAIL-TLPTNILLSPTGKILARDIQGEALTGKLKE  143 (148)
T ss_dssp             --HHHHHHHHHHTTCCSEEEC-CSCGGGCHHHH---HTTCC-SSSEEEEECTTSBEEEESCCHHHHHHHHHH
T ss_pred             --HHHHHHHHHHcCCCceEEE-ccCCcchHHHH---hcCCC-CcCEEEEECCCCeEEEecCCHHHHHHHHHH
Confidence              1233333333333343221 22222222222   22543 358899999999999998855556555554

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=94.98  E-value=0.32  Score=36.89  Aligned_cols=129  Identities=15%  Similarity=0.131  Sum_probs=74.6

Q ss_pred             cCCceeehhhhcCcceEEEEecC-hhHHHH-HHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhhccc
Q 026511           84 DEKKIISVNNLRGIARLVICSGP-ASYIME-SFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRL  161 (237)
Q Consensus        84 ~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~-al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~~~  161 (237)
                      .+++.+++.++++..-+|....+ =.++.. ++...+.+.+++.+.++.+|-|.++...  .+.+..+...++.....-.
T Consensus        16 ~~g~~~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~   93 (158)
T 3eyt_A           16 NSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEH--HEAMTPISLKAFLHEYRIK   93 (158)
T ss_dssp             SCSSCCCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSC--GGGSCHHHHHHHHHHTTCC
T ss_pred             cCCCccCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccc--cccCCHHHHHHHHHHcCCC
Confidence            45799999999986544443332 345655 5777777888888789999999885211  0111223333433332222


Q ss_pred             eEEeecccchHH-HHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026511          162 WQLTPVYVSEWS-KWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQL  218 (237)
Q Consensus       162 ~~a~Pv~~~~W~-~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~eL  218 (237)
                      |   |+..+.-. .-+.+-.+.-|+. .-+.++.+.+||+|+.+-.|..+..++.+.|
T Consensus        94 ~---~~~~d~~~~~~~~~~~~~~~v~-~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i  147 (158)
T 3eyt_A           94 F---PVGVDQPGDGAMPRTMAAYQMR-GTPSLLLIDKAGDLRAHHFGDVSELLLGAEI  147 (158)
T ss_dssp             S---CEEEECCCSSSSCHHHHHTTCC-SSSEEEEECTTSEEEEEEESCCCHHHHHHHH
T ss_pred             c---eEEEcCccchhhHHHHHHcCCC-CCCEEEEECCCCCEEEEEeCCCCHHHHHHHH
Confidence            2   22111100 0000111122542 2578999999999999999988887766543

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=94.88  E-value=0.67  Score=36.86  Aligned_cols=130  Identities=18%  Similarity=0.311  Sum_probs=71.2

Q ss_pred             cCCceeehhhhcCcceEEEEecC--hhHHHHHHhhchhhHHHHhhc--CcEEEEEEeCCCCCCCCccchHHHHHHhhh--
Q 026511           84 DEKKIISVNNLRGIARLVICSGP--ASYIMESFKRSEPFTESLLER--GVLVVSFTTDGNIPSFEFEESEEMKEFTRK--  157 (237)
Q Consensus        84 ~~~r~v~l~~LR~~aRvVI~AG~--~e~V~~al~~a~~~~~~L~~r--~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~--  157 (237)
                      .+|+++++++|||..-++-.--+  +.-+...+.....+.+.+.+.  +|.+|-|..|-+..     ..+..+++..+  
T Consensus        20 ~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~D-----tp~~l~~y~~~~~   94 (170)
T 4hde_A           20 QDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLD-----KPENLKAFIQKFT   94 (170)
T ss_dssp             TTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTC-----CHHHHHHHHTTTC
T ss_pred             CCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccc-----cHHHHHHHHHHcC
Confidence            35899999999997544443322  234656666666666777655  47778777753211     12233333332  


Q ss_pred             -hccceEE-eecccchHHHHHHHHHHHcCCCCC------CCeEEEEeeCCeeecc--cCCCCcHHHHhhcC
Q 026511          158 -RKRLWQL-TPVYVSEWSKWLDEQKRTAGISPE------SPVYLSLRLDGRVRGS--GVGYPPWNAFVAQL  218 (237)
Q Consensus       158 -~~~~~~a-~Pv~~~~W~~wi~eq~~~Agv~~~------~gvyi~lr~dGrVr~S--G~G~PpW~~~v~eL  218 (237)
                       ....|.. +.-..++-..+.........-.++      ...++.|..+|+|++.  |....+-.+++++|
T Consensus        95 ~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~~l~~~i  165 (170)
T 4hde_A           95 EDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYSGISNTPYEDIIRDM  165 (170)
T ss_dssp             SCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEESSSSCCHHHHHHHH
T ss_pred             CCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEECCCCCCCHHHHHHHH
Confidence             2245654 222333333333332211111111      2356789999999976  55555667887765

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=94.84  E-value=0.19  Score=38.17  Aligned_cols=131  Identities=9%  Similarity=0.089  Sum_probs=78.3

Q ss_pred             hhhcccceeEecCCceeehh--hhcCcceEEEEecC-hhH--HHHHHhhchhhHHHH-hhcCcEEEEEEeCCCCCCCCcc
Q 026511           73 EESLSNLKLRVDEKKIISVN--NLRGIARLVICSGP-ASY--IMESFKRSEPFTESL-LERGVLVVSFTTDGNIPSFEFE  146 (237)
Q Consensus        73 ee~L~rL~V~l~~~r~v~l~--~LR~~aRvVI~AG~-~e~--V~~al~~a~~~~~~L-~~r~VlVVPv~~~g~~~~~~f~  146 (237)
                      ++.+-.+.+.-.+|+.+++.  ++++..-+|....+ =..  +...+...+.+.+++ .+.++-+|-|..+..       
T Consensus         8 G~~~p~f~l~~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~-------   80 (150)
T 3fw2_A            8 GKYAPFFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVD-------   80 (150)
T ss_dssp             TSBCCCCCEEBTTCCEECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSC-------
T ss_pred             CCcCCccEeECCCCCEEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCC-------
Confidence            44445555555668999999  99986444443332 234  666777777788888 888999999988532       


Q ss_pred             chHHHHHHhhhhccceEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhh
Q 026511          147 ESEEMKEFTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVA  216 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~  216 (237)
                       .+...++.....-.|.... +...+..-+.   +.-|+. .-+-++.+.+||+|+.+..+.....+.++
T Consensus        81 -~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~---~~~~v~-~~P~~~lid~~G~i~~~~~~~~~l~~~l~  144 (150)
T 3fw2_A           81 -KQQWKDAIKRDTLDWEQVC-DFGGLNSEVA---KQYSIY-KIPANILLSSDGKILAKNLRGEELKKKIE  144 (150)
T ss_dssp             -HHHHHHHHHHTTCCSEEEC-CSCGGGCHHH---HHTTCC-SSSEEEEECTTSBEEEESCCHHHHHHHHH
T ss_pred             -HHHHHHHHHHhCCCceEEE-cCcccchHHH---HHcCCC-ccCeEEEECCCCEEEEccCCHHHHHHHHH
Confidence             1233333333334443321 2222221121   222553 35789999999999999874444444444

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=94.83  E-value=0.45  Score=36.06  Aligned_cols=123  Identities=11%  Similarity=0.073  Sum_probs=75.5

Q ss_pred             cCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhhccce
Q 026511           84 DEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLW  162 (237)
Q Consensus        84 ~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~~~~  162 (237)
                      .+|+.+++.++++..-+|...++ =.++...+...+.+.+++.+.++.||.|..+.         .+...++.....-.|
T Consensus        12 ~~G~~~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~---------~~~~~~~~~~~~~~~   82 (151)
T 3raz_A           12 KDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDT---------SDNIGNFLKQTPVSY   82 (151)
T ss_dssp             TTCCEECGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSC---------HHHHHHHHHHSCCSS
T ss_pred             cCCCEecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCC---------hHHHHHHHHHcCCCC
Confidence            46899999999997555544443 24466666666777777778899999998842         123333333323333


Q ss_pred             EEeecccchHHHHHHHHHHHcCCCCC-CCeEEEEeeCCeeecccCCCCcHHHHhhcCC
Q 026511          163 QLTPVYVSEWSKWLDEQKRTAGISPE-SPVYLSLRLDGRVRGSGVGYPPWNAFVAQLP  219 (237)
Q Consensus       163 ~a~Pv~~~~W~~wi~eq~~~Agv~~~-~gvyi~lr~dGrVr~SG~G~PpW~~~v~eLp  219 (237)
                      ....-....-.    +-.+.-|.... -+.++.+..||+|+.+-.|..+..++.+.|.
T Consensus        83 ~~~~~~~~~~~----~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~  136 (151)
T 3raz_A           83 PIWRYTGANSR----NFMKTYGNTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVK  136 (151)
T ss_dssp             CEEEECCSCHH----HHHHTTTCCSCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHH
T ss_pred             ceEecCccchH----HHHHHhCCccCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHH
Confidence            22211111111    11112242122 4789999999999999999999888776654

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=94.78  E-value=0.59  Score=36.69  Aligned_cols=131  Identities=10%  Similarity=0.050  Sum_probs=79.8

Q ss_pred             hhcccceeEec--CCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCc------EEEEEEeCCCCCCCC
Q 026511           74 ESLSNLKLRVD--EKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGV------LVVSFTTDGNIPSFE  144 (237)
Q Consensus        74 e~L~rL~V~l~--~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~V------lVVPv~~~g~~~~~~  144 (237)
                      +.+-.+.+.--  +++.+++.++++..-+|....+ =.++...+...+.+.+++.++|+      .+|-|..+..     
T Consensus        35 ~~~p~f~l~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~-----  109 (183)
T 3lwa_A           35 QQLPDIGGDSLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDY-----  109 (183)
T ss_dssp             CCCCCCEEEBSSSTTCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCC-----
T ss_pred             CCCCceeccccccCCcEecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCC-----
Confidence            45556666666  7999999999996555554443 34567777777888889999998      9999988531     


Q ss_pred             ccchHHHHHHhhhhccceEEeecccchHHHHHHHHHHHcC-CCCC-CCeEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026511          145 FEESEEMKEFTRKRKRLWQLTPVYVSEWSKWLDEQKRTAG-ISPE-SPVYLSLRLDGRVRGSGVGYPPWNAFVAQL  218 (237)
Q Consensus       145 f~~~~~~~~~~~~~~~~~~a~Pv~~~~W~~wi~eq~~~Ag-v~~~-~gvyi~lr~dGrVr~SG~G~PpW~~~v~eL  218 (237)
                        ..+...++...-.-.|.... +.+.   .+..   .-| +... -+-++.+.+||+|+.+-.|.++-.++.+.|
T Consensus       110 --~~~~~~~~~~~~~~~~~~~~-d~~~---~~~~---~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  176 (183)
T 3lwa_A          110 --SRDIAQDFVTDNGLDYPSIY-DPPF---MTAA---SLGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVA  176 (183)
T ss_dssp             --CHHHHHHHHHHTTCCSCEEE-CTTC---GGGG---GTTTCCTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHH
T ss_pred             --CHHHHHHHHHHcCCCccEEE-CCcc---hHHH---HhccCCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHH
Confidence              11222333322222222111 1000   0000   012 1222 477899999999999999998887776654

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=94.76  E-value=0.19  Score=37.87  Aligned_cols=126  Identities=13%  Similarity=0.116  Sum_probs=72.8

Q ss_pred             cceeEecCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhh
Q 026511           78 NLKLRVDEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTR  156 (237)
Q Consensus        78 rL~V~l~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~  156 (237)
                      .+.+.-.+++.+++.++++..-+|....+ =.++...+...+.+.+++.+.++.++-|..+.+        .+...++..
T Consensus        12 ~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~--------~~~~~~~~~   83 (152)
T 2lja_A           12 SFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKN--------KKAWENMVT   83 (152)
T ss_dssp             SCEEEETTTEEEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSC--------HHHHHHHHH
T ss_pred             ccEeecCCCCEeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCc--------HHHHHHHHH
Confidence            45555556899999999886555544432 233444444445566677778899999887532        122233333


Q ss_pred             hhccceEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026511          157 KRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQL  218 (237)
Q Consensus       157 ~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~eL  218 (237)
                      ...-.|.....+.+.      +-.+.-|+. .-+.++++..||+|..+..|.++-.++.+.|
T Consensus        84 ~~~~~~~~~~~d~~~------~~~~~~~v~-~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  138 (152)
T 2lja_A           84 KDQLKGIQLHMGTDR------TFMDAYLIN-GIPRFILLDRDGKIISANMTRPSDPKTAEKF  138 (152)
T ss_dssp             HHTCCSEEEECSSCT------HHHHHTTCC-SSCCEEEECTTSCEEESSCCCTTCHHHHHHH
T ss_pred             hcCCCCceeecCcch------hHHHHcCcC-CCCEEEEECCCCeEEEccCCCCCHHHHHHHH
Confidence            333333222222110      111122442 2477899999999999999987766555443

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=94.45  E-value=1.1  Score=33.88  Aligned_cols=128  Identities=9%  Similarity=0.046  Sum_probs=78.4

Q ss_pred             EecCCceeehhhhcCcceEEEEecC-hh-HHHHHHhhchhhHHHHhh----cCcEEEEEEeCCCCCCCCccchHHHHHHh
Q 026511           82 RVDEKKIISVNNLRGIARLVICSGP-AS-YIMESFKRSEPFTESLLE----RGVLVVSFTTDGNIPSFEFEESEEMKEFT  155 (237)
Q Consensus        82 ~l~~~r~v~l~~LR~~aRvVI~AG~-~e-~V~~al~~a~~~~~~L~~----r~VlVVPv~~~g~~~~~~f~~~~~~~~~~  155 (237)
                      .-.+|+.+++.++++..-+|....+ =. .+...+...+.+.+++.+    .++-||-|..+.+.     +..+...++.
T Consensus         9 ~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~-----d~~~~~~~~~   83 (164)
T 2ggt_A            9 TTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPER-----DTKEAIANYV   83 (164)
T ss_dssp             EETTSCEEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTT-----CCHHHHHHHH
T ss_pred             EeCCCCEEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCC-----CCHHHHHHHH
Confidence            3346899999999986544443332 23 377777777788888877    48999988885421     1123344444


Q ss_pred             hhhccceEEeecccchHHHHHHHHHHHcCCC--C-----CC-------CeEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026511          156 RKRKRLWQLTPVYVSEWSKWLDEQKRTAGIS--P-----ES-------PVYLSLRLDGRVRGSGVGYPPWNAFVAQL  218 (237)
Q Consensus       156 ~~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~--~-----~~-------gvyi~lr~dGrVr~SG~G~PpW~~~v~eL  218 (237)
                      ..-...|...+.+.+.    ..+-.+.-|+.  |     ..       ..++.+..||+|+.+-.|.++..++.+.|
T Consensus        84 ~~~~~~~~~l~~~~d~----~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l  156 (164)
T 2ggt_A           84 KEFSPKLVGLTGTREE----VDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASI  156 (164)
T ss_dssp             HTTCSSCEEEECCHHH----HHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHH
T ss_pred             HHcCCCeEEEeCCHHH----HHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHH
Confidence            4444556544322121    11111222542  2     01       16889999999999988988888887665

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=94.24  E-value=0.72  Score=34.62  Aligned_cols=128  Identities=15%  Similarity=0.240  Sum_probs=77.6

Q ss_pred             hcccceeEecCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHH
Q 026511           75 SLSNLKLRVDEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKE  153 (237)
Q Consensus        75 ~L~rL~V~l~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~  153 (237)
                      .+-.+.+.-.+++.+++.++++..-+|...++ -.++...+...+.+.+.+.+.++-++-|..+.+       ..+...+
T Consensus         7 ~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~-------~~~~~~~   79 (154)
T 3kcm_A            7 PAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEG-------GKVAVEE   79 (154)
T ss_dssp             BCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTT-------HHHHHHH
T ss_pred             CCCCeEEEcCCCCEEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCc-------chHHHHH
Confidence            34445555556899999999886555544433 346677777778888888888999999988542       1222233


Q ss_pred             HhhhhccceEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHH--HHhhc
Q 026511          154 FTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWN--AFVAQ  217 (237)
Q Consensus       154 ~~~~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~--~~v~e  217 (237)
                      +.....-.|   |+..+.-.. +.   +.-|+. .-+.++.+..||+|+.+-.|..+|+  ++.+.
T Consensus        80 ~~~~~~~~~---~~~~d~~~~-~~---~~~~v~-~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~  137 (154)
T 3kcm_A           80 FFRKTGFTL---PVLLDADKR-VG---KLYGTT-GVPETFVIDRHGVILKKVVGAMEWDHPEVIAF  137 (154)
T ss_dssp             HHHHHCCCC---CEEECTTCH-HH---HHHTCC-SBCEEEEECTTSBEEEEEESCCCTTSHHHHHH
T ss_pred             HHHHcCCCe---eEEecCchH-HH---HHhCCC-CCCeEEEECCCCcEEEEEcCCCccccHHHHHH
Confidence            333322222   332222111 11   112442 2578999999999999988887665  44443

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=94.17  E-value=0.56  Score=35.23  Aligned_cols=128  Identities=13%  Similarity=0.164  Sum_probs=80.4

Q ss_pred             cccceeEecCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHH
Q 026511           76 LSNLKLRVDEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEF  154 (237)
Q Consensus        76 L~rL~V~l~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~  154 (237)
                      +-.+.+.--+|+.+++.++++..-+|...++ =.++...+...+.+.+.+.+.++.||.|..+..       ..+...++
T Consensus         8 ~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~-------~~~~~~~~   80 (153)
T 2l5o_A            8 APAFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPID-------PIESVRQY   80 (153)
T ss_dssp             CCSCEEECTTSCEEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTS-------CHHHHHHH
T ss_pred             CCCcEeecCCCCCccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCC-------CHHHHHHH
Confidence            3344444456899999999987655555443 345666666777778888888999999886432       12233333


Q ss_pred             hhhhccceEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026511          155 TRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQL  218 (237)
Q Consensus       155 ~~~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~eL  218 (237)
                      .....-.|   |+..+.-.. +   .+.-|+. .-+.++.+..||+|+..-.|.+++.++.+.|
T Consensus        81 ~~~~~~~~---~~~~d~~~~-~---~~~~~i~-~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  136 (153)
T 2l5o_A           81 VKDYGLPF---TVMYDADKA-V---GQAFGTQ-VYPTSVLIGKKGEILKTYVGEPDFGKLYQEI  136 (153)
T ss_dssp             HHHTTCCS---EEEECSSCH-H---HHHHTCC-SSSEEEEECSSSCCCEEEESSCCHHHHHHHH
T ss_pred             HHHcCCCc---eEEcCchHH-H---HHHcCCC-ccCeEEEECCCCcEEEEEcCCCCHHHHHHHH
Confidence            33322333   332222111 1   1122542 2578899999999999889999998887765

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=93.82  E-value=0.39  Score=35.73  Aligned_cols=125  Identities=14%  Similarity=0.115  Sum_probs=67.8

Q ss_pred             ceeEecCCceeehhhhcCcceEEEEecC-hhHHHHH---HhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHH
Q 026511           79 LKLRVDEKKIISVNNLRGIARLVICSGP-ASYIMES---FKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEF  154 (237)
Q Consensus        79 L~V~l~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~a---l~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~  154 (237)
                      +.+.-.+|+.+++.++++..-+|...++ =.++...   |.....+.+.+.+.++.||-|..+.+        .+...++
T Consensus        10 f~l~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~--------~~~~~~~   81 (142)
T 3ewl_A           10 FTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDEN--------REEWATK   81 (142)
T ss_dssp             CEEECTTCCEEEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSC--------HHHHHHH
T ss_pred             CEEECCCCCEEEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCC--------HHHHHHH
Confidence            4444456899999999986444433332 2334444   33344478888889999999987532        1222333


Q ss_pred             hhhhccceEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhhc
Q 026511          155 TRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQ  217 (237)
Q Consensus       155 ~~~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~e  217 (237)
                      .....-.|.... +.+..   + .+.+.-|+. .-+-++.+..||+|+.++.......+++++
T Consensus        82 ~~~~~~~~~~~~-d~~~~---~-~~~~~~~v~-~~P~~~lid~~G~i~~~~~~~~~l~~~l~~  138 (142)
T 3ewl_A           82 AVYMPQGWIVGW-NKAGD---I-RTRQLYDIR-ATPTIYLLDGRKRVILKDTSMEQLIDYLAT  138 (142)
T ss_dssp             HTTSCTTCEEEE-CTTCH---H-HHTTCSCCC-SSSEEEEECTTCBEEECSCCHHHHHHHHHC
T ss_pred             HHHcCCCcceee-CCccc---h-hhHHHcCCC-CCCeEEEECCCCCEEecCCCHHHHHHHHHH
Confidence            322222332211 11110   0 001112442 257899999999999966544444444443

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=93.77  E-value=0.26  Score=38.21  Aligned_cols=125  Identities=9%  Similarity=0.057  Sum_probs=71.6

Q ss_pred             cceeEecCCceeehhhhcCcceEEEEecC--hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHh
Q 026511           78 NLKLRVDEKKIISVNNLRGIARLVICSGP--ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFT  155 (237)
Q Consensus        78 rL~V~l~~~r~v~l~~LR~~aRvVI~AG~--~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~  155 (237)
                      ...+.-.+|+.+++.++++..-++....+  -..+...+...+.+.+++  .++-||-|..+......+|-         
T Consensus        26 ~f~l~~~~G~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~--~~~~vv~is~d~~~~~~~~~---------   94 (167)
T 2jsy_A           26 DFTVLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL--GDVNVYTISADLPFAQARWC---------   94 (167)
T ss_dssp             CCEEEBTTCCEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH--SSCEEEEEECSSGGGTSCCG---------
T ss_pred             ceEEECCCCCEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc--CCCEEEEEECCCHHHHHHHH---------
Confidence            34444445899999999987544443333  467777777777777777  78999998885211111121         


Q ss_pred             hhhccceEEeecccchHHHHHHHHHHHcCCCCC-----CCeEEEEeeCCeeecccCCCCc-----HHHHhhcC
Q 026511          156 RKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPE-----SPVYLSLRLDGRVRGSGVGYPP-----WNAFVAQL  218 (237)
Q Consensus       156 ~~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~~-----~gvyi~lr~dGrVr~SG~G~Pp-----W~~~v~eL  218 (237)
                      ..  ..+.-.|+..+....=+.   +.-|+...     .+-++++.+||+|+.+..|.++     ..++++.|
T Consensus        95 ~~--~~~~~~~~~~d~~~~~~~---~~~~v~~~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l  162 (167)
T 2jsy_A           95 GA--NGIDKVETLSDHRDMSFG---EAFGVYIKELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAA  162 (167)
T ss_dssp             GG--SSCTTEEEEEGGGTCHHH---HHTTCBBTTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHH
T ss_pred             Hh--cCCCCceEeeCCchhHHH---HHhCCccccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHH
Confidence            11  111123443331111111   22254332     2678999999999999987543     35555543

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=93.71  E-value=1.2  Score=35.31  Aligned_cols=145  Identities=16%  Similarity=0.225  Sum_probs=83.7

Q ss_pred             hhhhcccceeEecCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHH
Q 026511           72 REESLSNLKLRVDEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEE  150 (237)
Q Consensus        72 Ree~L~rL~V~l~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~  150 (237)
                      -.+.+-.+.+.-.+|+.++++++++..-+|..-++ =..+...+...+.+.+++.++|+-||.|..+.-... +-+..+.
T Consensus        25 ~g~~~p~f~l~~~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~-~~~~~~~  103 (185)
T 2gs3_A           25 CARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQ-EPGSNEE  103 (185)
T ss_dssp             GCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTC-CCSCHHH
T ss_pred             CCCCcCCceeEcCCCCEeeHHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCC-CCCCHHH
Confidence            34455555665556899999999996544433322 235667777778888889999999999987531000 1111233


Q ss_pred             HHHHhhhhccceEEee-cccc------hHHHHHHHHHHHcCCCC---C-CCeEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026511          151 MKEFTRKRKRLWQLTP-VYVS------EWSKWLDEQKRTAGISP---E-SPVYLSLRLDGRVRGSGVGYPPWNAFVAQL  218 (237)
Q Consensus       151 ~~~~~~~~~~~~~a~P-v~~~------~W~~wi~eq~~~Agv~~---~-~gvyi~lr~dGrVr~SG~G~PpW~~~v~eL  218 (237)
                      ..++...-.-.|...- ++.+      .| .|+.++....|+.+   . .+-.+.+.+||+|+.+=.|..+..++.+.+
T Consensus       104 ~~~~~~~~~~~~p~~~~~d~~~~~~~~~~-~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i  181 (185)
T 2gs3_A          104 IKEFAAGYNVKFDMFSKICVNGDDAHPLW-KWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL  181 (185)
T ss_dssp             HHHHHHHTTCCSEEBCCCBSSSTTBCHHH-HHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTSCGGGGGGGH
T ss_pred             HHHHHHHcCCCCeeeeeeccCChhhhHHH-HHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCCCHHHHHHHH
Confidence            4444433333332211 0111      22 23332221124322   1 257889999999999988887777766554

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=93.45  E-value=1.4  Score=35.70  Aligned_cols=130  Identities=11%  Similarity=0.022  Sum_probs=75.8

Q ss_pred             ccceeEecCCceeehhhhcCcceEEEEecCh-h-HHHHHHhhchhhHHHHhhc---CcEEEEEEeCCCCCCCCccchHHH
Q 026511           77 SNLKLRVDEKKIISVNNLRGIARLVICSGPA-S-YIMESFKRSEPFTESLLER---GVLVVSFTTDGNIPSFEFEESEEM  151 (237)
Q Consensus        77 ~rL~V~l~~~r~v~l~~LR~~aRvVI~AG~~-e-~V~~al~~a~~~~~~L~~r---~VlVVPv~~~g~~~~~~f~~~~~~  151 (237)
                      -.+.+.-.+|+.+++++++|..-+|...++- . .+...+...+.+.+++.+.   ++-||-|..+...     +..+..
T Consensus        22 p~f~l~d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~-----d~~~~~   96 (200)
T 2b7k_A           22 GPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPAR-----DSPAVL   96 (200)
T ss_dssp             CCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTT-----CCHHHH
T ss_pred             CCEEEEcCCCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCC-----CCHHHH
Confidence            4445554568999999999865554444332 3 3666677777777777754   8888888875321     122334


Q ss_pred             HHHhhhhccceEEeecccchHHHHHHHHHHHcCCC---C------------CCCeEEEEeeCCeeecccCCCCcHHHHh
Q 026511          152 KEFTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGIS---P------------ESPVYLSLRLDGRVRGSGVGYPPWNAFV  215 (237)
Q Consensus       152 ~~~~~~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~---~------------~~gvyi~lr~dGrVr~SG~G~PpW~~~v  215 (237)
                      .++...-...|...|...++=.+..    +.-|+.   |            ..+.+++|..||+|+..=.|..+-..+.
T Consensus        97 ~~~~~~~~~~~~~l~~~~d~~~~~~----~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~  171 (200)
T 2b7k_A           97 KEYLSDFHPSILGLTGTFDEVKNAC----KKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGV  171 (200)
T ss_dssp             HHHHTTSCTTCEEEECCHHHHHHHH----HHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHH
T ss_pred             HHHHHHcCCCceEEeCCHHHHHHHH----HHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHH
Confidence            4444444456766665433222211    122442   1            0125789999999999877755544433

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=93.24  E-value=1.6  Score=33.30  Aligned_cols=134  Identities=13%  Similarity=0.146  Sum_probs=76.1

Q ss_pred             hhhhcccceeEecCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCC---------CCC
Q 026511           72 REESLSNLKLRVDEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDG---------NIP  141 (237)
Q Consensus        72 Ree~L~rL~V~l~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g---------~~~  141 (237)
                      -.+.+-.+.+.-.+++.+++.++++..-+|...++ =.++...+...+.+.+++.  +|-||-|..+.         +.+
T Consensus        13 ~g~~~p~~~l~~~~g~~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~--~v~vv~i~~d~~~~~~~~~~~~~   90 (165)
T 3ha9_A           13 VLEREASFSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR--EISVIAIDFWTAEALKALGLNKP   90 (165)
T ss_dssp             HHHHHHCCCEEBTTSCEECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT--TEEEEEEECCSHHHHHHHTCCST
T ss_pred             ccCcCCCCEeecCCCCEeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC--CcEEEEEEecccccccccccccc
Confidence            34555666666667999999999986555544332 3456666666677777766  89999888751         111


Q ss_pred             CCC-ccchHHHHHHhhhhcc-ceEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCC-cHHHHhhcC
Q 026511          142 SFE-FEESEEMKEFTRKRKR-LWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYP-PWNAFVAQL  218 (237)
Q Consensus       142 ~~~-f~~~~~~~~~~~~~~~-~~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~P-pW~~~v~eL  218 (237)
                      ... ....+...++.....- .|   |+..+  ..   +-.+.-|+. .-+.++.+.+||+|+.  .|.. +..++.+.|
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~d--~~---~~~~~~~v~-~~P~~~lid~~G~i~~--~g~~~~~~~l~~~l  159 (165)
T 3ha9_A           91 GYPPPDTPEMFRKFIANYGDPSW---IMVMD--DG---SLVEKFNVR-SIDYIVIMDKSSNVLY--AGTTPSLGELESVI  159 (165)
T ss_dssp             TSCCCCCHHHHHHHHHHHSCTTS---EEEEC--CS---HHHHHTTCC-SSSEEEEEETTCCEEE--EEESCCHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHcCCCCe---eEEeC--hH---HHHHHhCCC-CceEEEEEcCCCcEEE--eCCCCCHHHHHHHH
Confidence            111 1111222332222111 22   22111  00   111112542 2578999999999999  6666 677766554

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=93.19  E-value=1.7  Score=31.55  Aligned_cols=120  Identities=11%  Similarity=0.073  Sum_probs=69.9

Q ss_pred             eeEecCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhh
Q 026511           80 KLRVDEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKR  158 (237)
Q Consensus        80 ~V~l~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~  158 (237)
                      .+.-.+++.+++.++++..-+|....+ =.++...+...+.+.+++.  ++-++-|..+.+        .+...++....
T Consensus         8 ~l~~~~g~~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~--------~~~~~~~~~~~   77 (136)
T 1lu4_A            8 TATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--AVTFVGIATRAD--------VGAMQSFVSKY   77 (136)
T ss_dssp             EEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSC--------HHHHHHHHHHH
T ss_pred             EeecCCCCeecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC--CcEEEEEEcCCC--------HHHHHHHHHHc
Confidence            333345899999999987655554433 3456655555566666665  899988887531        12223332222


Q ss_pred             ccceEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccC---CCCcHHHHhhcC
Q 026511          159 KRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGV---GYPPWNAFVAQL  218 (237)
Q Consensus       159 ~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~---G~PpW~~~v~eL  218 (237)
                      .-.|   |+..+.=.. +   .+.-|+. .-+.++.+..||+|+ +-.   |.++..++.+.|
T Consensus        78 ~~~~---~~~~d~~~~-~---~~~~~i~-~~P~~~lid~~G~i~-~~~~~~g~~~~~~l~~~l  131 (136)
T 1lu4_A           78 NLNF---TNLNDADGV-I---WARYNVP-WQPAFVFYRADGTST-FVNNPTAAMSQDELSGRV  131 (136)
T ss_dssp             TCCS---EEEECTTSH-H---HHHTTCC-SSSEEEEECTTSCEE-EECCSSSCCCHHHHHHHH
T ss_pred             CCCc---eEEECCchh-H---HHhcCCC-CCCEEEEECCCCcEE-EEEcCCCccCHHHHHHHH
Confidence            2222   221111111 1   1122442 258899999999999 888   988888776654

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=93.17  E-value=0.91  Score=35.07  Aligned_cols=115  Identities=15%  Similarity=0.097  Sum_probs=72.2

Q ss_pred             cccceeEecCCceeehhhhcCcceEEEEec---ChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHH
Q 026511           76 LSNLKLRVDEKKIISVNNLRGIARLVICSG---PASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMK  152 (237)
Q Consensus        76 L~rL~V~l~~~r~v~l~~LR~~aRvVI~AG---~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~  152 (237)
                      +-.+.+.-.+|+.+++.++++...+||.--   .-..+...+...+.+.+++.+.|+-||-|..+.         .+...
T Consensus         8 ~P~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~---------~~~~~   78 (161)
T 3drn_A            8 APLFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDD---------INSHK   78 (161)
T ss_dssp             CCCCEEEETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCC---------HHHHH
T ss_pred             CCCeEeecCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCC---------HHHHH
Confidence            334455555689999999999873444333   334567777788888899999999999987731         12333


Q ss_pred             HHhhhhccceEEeecccchHHHHHHHHH-HHcCCCC---CCCeEEEEeeCCeeecccCC
Q 026511          153 EFTRKRKRLWQLTPVYVSEWSKWLDEQK-RTAGISP---ESPVYLSLRLDGRVRGSGVG  207 (237)
Q Consensus       153 ~~~~~~~~~~~a~Pv~~~~W~~wi~eq~-~~Agv~~---~~gvyi~lr~dGrVr~SG~G  207 (237)
                      ++.....-.   .|+..+.     +.++ +.-|+..   .-+.++.+..||+|+..-.|
T Consensus        79 ~~~~~~~~~---~~~~~d~-----~~~~~~~~~v~~~~~~~P~~~lid~~G~i~~~~~g  129 (161)
T 3drn_A           79 RFKEKYKLP---FILVSDP-----DKKIRELYGAKGFILPARITFVIDKKGIIRHIYNS  129 (161)
T ss_dssp             HHHHHTTCC---SEEEECT-----TSHHHHHTTCCCSSSCCCEEEEECTTSBEEEEEEC
T ss_pred             HHHHHhCCC---ceEEECC-----cHHHHHHcCCCCcCcccceEEEECCCCEEEEEEec
Confidence            333333333   3333221     1112 1225431   15789999999999988888

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=92.79  E-value=0.19  Score=37.83  Aligned_cols=130  Identities=8%  Similarity=-0.031  Sum_probs=72.6

Q ss_pred             hcccceeEecCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHH
Q 026511           75 SLSNLKLRVDEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKE  153 (237)
Q Consensus        75 ~L~rL~V~l~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~  153 (237)
                      .+-.+.+ -.+++.++++++++..-++...++ -..+...+...+.+.+++.+.++.||-|.++.+        .+...+
T Consensus        12 ~~P~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~--------~~~~~~   82 (143)
T 4fo5_A           12 LAPRIEF-LGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEK--------ESIFTE   82 (143)
T ss_dssp             BCCCCCC------CCCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSC--------HHHHHH
T ss_pred             cCCceEE-cCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCC--------HHHHHH
Confidence            3334444 235789999999996544444333 344666666677777778778999999988532        223333


Q ss_pred             HhhhhccceEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhhc
Q 026511          154 FTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQ  217 (237)
Q Consensus       154 ~~~~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~e  217 (237)
                      +.....-.|-..-.+...|..   +-.+.-|+. .-+-++.+..||+|+.+..+.....+++++
T Consensus        83 ~~~~~~~~~~~~~~d~~~~~~---~~~~~~~v~-~~P~~~lid~~G~i~~~~~~~~~l~~~l~~  142 (143)
T 4fo5_A           83 TVKIDKLDLSTQFHEGLGKES---ELYKKYDLR-KGFKNFLINDEGVIIAANVTPEKLTEILKA  142 (143)
T ss_dssp             HHHHHTCCGGGEEECTTGGGS---HHHHHTTGG-GCCCEEEECTTSBEEEESCCHHHHHHHHTC
T ss_pred             HHHHhCCCCceeeecccccch---HHHHHcCCC-CCCcEEEECCCCEEEEccCCHHHHHHHHHh
Confidence            333333333111112222221   111222442 246789999999999998876555555554

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=92.63  E-value=2.5  Score=33.20  Aligned_cols=136  Identities=13%  Similarity=0.129  Sum_probs=79.7

Q ss_pred             ceeEecCCceeehhhhcCcceEEEE-ecChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhh
Q 026511           79 LKLRVDEKKIISVNNLRGIARLVIC-SGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRK  157 (237)
Q Consensus        79 L~V~l~~~r~v~l~~LR~~aRvVI~-AG~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~  157 (237)
                      +.+.-.+|+.+++++++|..-+|.. |--=..+...+...+.+.+++.+.|+.||-|..+.-.. .+-+..+...++...
T Consensus        21 f~l~d~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~-~~~d~~~~~~~~~~~   99 (180)
T 3kij_A           21 FEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGE-SEPRPSKEVESFARK   99 (180)
T ss_dssp             CEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTT-CCCSCHHHHHHHHHH
T ss_pred             eEEecCCCCEecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCcccc-CCCCCHHHHHHHHHH
Confidence            3444446899999999997444433 22233677778888888899999999999998753100 011222333444433


Q ss_pred             -hccceEEe----ecc--cchHHHHHHHHHHHcCCCCC-CCeEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026511          158 -RKRLWQLT----PVY--VSEWSKWLDEQKRTAGISPE-SPVYLSLRLDGRVRGSGVGYPPWNAFVAQL  218 (237)
Q Consensus       158 -~~~~~~a~----Pv~--~~~W~~wi~eq~~~Agv~~~-~gvyi~lr~dGrVr~SG~G~PpW~~~v~eL  218 (237)
                       -.-.|...    ..+  ....-.|+.+..   +..|. .--.+.+.+||+|+.+-.|..++..+.+++
T Consensus       100 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i  165 (180)
T 3kij_A          100 NYGVTFPIFHKIKILGSEGEPAFRFLVDSS---KKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDI  165 (180)
T ss_dssp             HHCCCSCBBCCCCCSSTTCCHHHHHHHHHH---TCCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHH
T ss_pred             hcCCCCceeeeeeccCccccHHHHHHHhcC---CCCccccceEEEECCCCCEEEEECCCCCHHHHHHHH
Confidence             22222211    011  112345554432   22222 122788999999999999988887766554

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=92.53  E-value=3.1  Score=32.66  Aligned_cols=143  Identities=16%  Similarity=0.237  Sum_probs=83.1

Q ss_pred             hcccceeEecCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHH
Q 026511           75 SLSNLKLRVDEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKE  153 (237)
Q Consensus        75 ~L~rL~V~l~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~  153 (237)
                      .+-.+.+.-.+|+.+++.++++..-+|...++ =..+...+...+.+.+++.++++-||-|..+.... .+-+..+...+
T Consensus        26 ~~p~f~l~~~~G~~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~-~e~~~~~~~~~  104 (183)
T 2obi_A           26 SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGK-QEPGSNEEIKE  104 (183)
T ss_dssp             SGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTT-CCCSCHHHHHH
T ss_pred             cccceEEEcCCCCEeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCC-CCCCCHHHHHH
Confidence            34445555456899999999996544443332 34666777777888888999999999998753100 01112233444


Q ss_pred             HhhhhccceEEee-cccc------hHHHHHHHHHHHcCCCC---C-CCeEEEEeeCCeeecccCCCCcHHHHhhcCC
Q 026511          154 FTRKRKRLWQLTP-VYVS------EWSKWLDEQKRTAGISP---E-SPVYLSLRLDGRVRGSGVGYPPWNAFVAQLP  219 (237)
Q Consensus       154 ~~~~~~~~~~a~P-v~~~------~W~~wi~eq~~~Agv~~---~-~gvyi~lr~dGrVr~SG~G~PpW~~~v~eLp  219 (237)
                      +...-.-.|...- ++.+      .|+ |+.++....|+.+   . -+.++.+.+||+|+.+-.|..+..++.+.|.
T Consensus       105 ~~~~~~~~~p~~~~~d~~~~~~~~~~~-~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~  180 (183)
T 2obi_A          105 FAAGYNVKFDMFSKICVNGDDAHPLWK-WMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLP  180 (183)
T ss_dssp             HHHTTTCCSEEBCCCCCSSTTSCHHHH-HHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHHHHTTSG
T ss_pred             HHHHcCCCceEEeeeccCCcchhHHHH-HhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHHHHHHHH
Confidence            4433223332211 1111      132 2322111013322   1 2678999999999999889888888877654

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=92.35  E-value=0.6  Score=35.33  Aligned_cols=135  Identities=16%  Similarity=0.131  Sum_probs=77.5

Q ss_pred             cceeEe-cCCceeehhhhcCcceEEEEe-cChhHHHH-HHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHH
Q 026511           78 NLKLRV-DEKKIISVNNLRGIARLVICS-GPASYIME-SFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEF  154 (237)
Q Consensus        78 rL~V~l-~~~r~v~l~~LR~~aRvVI~A-G~~e~V~~-al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~  154 (237)
                      .+.+.- -+|+.+++.++++..-+|... -.=.++.. .+...+.+.+++.+.|+.+|-|..+...  .+-+..+...++
T Consensus        11 ~~~~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~--~~~~~~~~~~~~   88 (160)
T 3lor_A           11 ELDVQEWVNHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEH--HDVMTPEALKVF   88 (160)
T ss_dssp             CCCEEEESSSCCCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSC--GGGSCHHHHHHH
T ss_pred             CcccccccCCCccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccc--cccCCHHHHHHH
Confidence            344442 457999999999865444433 33455666 5777788888888889999999885211  011122333333


Q ss_pred             hhhhccceEEeecccchHHH--HHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026511          155 TRKRKRLWQLTPVYVSEWSK--WLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQL  218 (237)
Q Consensus       155 ~~~~~~~~~a~Pv~~~~W~~--wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~eL  218 (237)
                      .....-.|   |+..+.-..  .+.+-.+.-|+. .-+-++.+..||+|+.+-.|..+..++.+.|
T Consensus        89 ~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~v~-~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i  150 (160)
T 3lor_A           89 IDEFGIKF---PVAVDMPREGQRIPSTMKKYRLE-GTPSIILADRKGRIRQVQFGQVDDFVLGLLL  150 (160)
T ss_dssp             HHHTTCCS---CEEEECCCTTCSSCHHHHHTTCC-SSSEEEEECTTSBEEEEEESCCCHHHHHHHH
T ss_pred             HHHcCCCC---cEEECCccccchhhhHHHhcccC-ccceEEEECCCCcEEEEecCcCCHHHHHHHH
Confidence            33322222   221111110  011111222542 2578999999999999988888877666544

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=92.26  E-value=0.66  Score=36.17  Aligned_cols=121  Identities=12%  Similarity=0.141  Sum_probs=67.8

Q ss_pred             eeEecCCceeehhhhcCcceEEEEe-c-ChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhh
Q 026511           80 KLRVDEKKIISVNNLRGIARLVICS-G-PASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRK  157 (237)
Q Consensus        80 ~V~l~~~r~v~l~~LR~~aRvVI~A-G-~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~  157 (237)
                      .+.-.+|+.++|++|+|..-++..- + --..+...+...+.+.++   .|+.||-|..+.         .+...++...
T Consensus        30 ~l~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~---~~~~vv~is~d~---------~~~~~~~~~~   97 (166)
T 3p7x_A           30 TVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK---EEGIVLTISADL---------PFAQKRWCAS   97 (166)
T ss_dssp             EEECTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT---TTSEEEEEESSC---------HHHHHHHHHH
T ss_pred             EEEcCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc---CCCEEEEEECCC---------HHHHHHHHHH
Confidence            3333458999999999964333322 2 234555555444433333   788888887531         2233343333


Q ss_pred             hcc-ceEEeecccchHHHHHHHHHHHcCCCCC-----CCeEEEEeeCCeeecccCC-----CCcHHHHhhcC
Q 026511          158 RKR-LWQLTPVYVSEWSKWLDEQKRTAGISPE-----SPVYLSLRLDGRVRGSGVG-----YPPWNAFVAQL  218 (237)
Q Consensus       158 ~~~-~~~a~Pv~~~~W~~wi~eq~~~Agv~~~-----~gvyi~lr~dGrVr~SG~G-----~PpW~~~v~eL  218 (237)
                      -.- .   .|+..+.|..=+.+   .-|+...     .+-.+++..||+|+.+..+     .|++.++++.|
T Consensus        98 ~~~~~---~~~l~D~~~~~~~~---~~gv~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l  163 (166)
T 3p7x_A           98 AGLDN---VITLSDHRDLSFGE---NYGVVMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAY  163 (166)
T ss_dssp             HTCSS---CEEEECTTTCHHHH---HHTCEETTTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHH
T ss_pred             cCCCc---eEEccCCchhHHHH---HhCCccccCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHH
Confidence            222 3   45544555331222   2254321     4678899999999998543     45677777665

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=91.91  E-value=0.093  Score=43.28  Aligned_cols=118  Identities=12%  Similarity=0.125  Sum_probs=67.7

Q ss_pred             cCCceeehhhhcCcceEEEEe-c-ChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhhccc
Q 026511           84 DEKKIISVNNLRGIARLVICS-G-PASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRL  161 (237)
Q Consensus        84 ~~~r~v~l~~LR~~aRvVI~A-G-~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~~~  161 (237)
                      .+|+.++|++++|..-++... + --..+...+...+.+.+++  .|+-||-|..+.         .+...++...-.- 
T Consensus        66 ~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~~v~vv~Is~D~---------~~~~~~~~~~~~~-  133 (200)
T 3zrd_A           66 KDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--ENTVVLCISSDL---------PFAQSRFCGAEGL-  133 (200)
T ss_dssp             TTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--TTEEEEEEESSC---------HHHHTTCTTTTTC-
T ss_pred             CCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--CCCEEEEEECCC---------HHHHHHHHHHcCC-
Confidence            358999999999965333332 3 2445566666666666666  789888887642         1122222222112 


Q ss_pred             eEEeecccchHHHHHHHHHHH-cCCCC------C--CCeEEEEeeCCeeecccCCC-----CcHHHHhhcC
Q 026511          162 WQLTPVYVSEWSKWLDEQKRT-AGISP------E--SPVYLSLRLDGRVRGSGVGY-----PPWNAFVAQL  218 (237)
Q Consensus       162 ~~a~Pv~~~~W~~wi~eq~~~-Agv~~------~--~gvyi~lr~dGrVr~SG~G~-----PpW~~~v~eL  218 (237)
                       .-.|+-.+.|    +.+... -|+..      +  .+-+++|..||+|+.+..+.     |+++++++.|
T Consensus       134 -~~f~~l~D~~----~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~~~l~~L  199 (200)
T 3zrd_A          134 -SNVITLSTLR----GADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYSELVNEITTEPNYDAALAAL  199 (200)
T ss_dssp             -TTEEEEETTS----CTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHHHH
T ss_pred             -CCceEEecCc----hHHHHHHhCceeecccCCCccccEEEEECCCCeEEEEEecCCcccCCCHHHHHHhh
Confidence             1234444544    222222 25431      1  36788999999999997665     4566666543

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=91.90  E-value=2.5  Score=32.98  Aligned_cols=123  Identities=15%  Similarity=0.147  Sum_probs=70.3

Q ss_pred             ceeEecCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhh
Q 026511           79 LKLRVDEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRK  157 (237)
Q Consensus        79 L~V~l~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~  157 (237)
                      +.+.-.+|+.+++.++++..-++....+ =..+...+...+.+.+++.+.++-||-|..+..++.       ...++...
T Consensus        43 f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~-------~~~~~~~~  115 (186)
T 1jfu_A           43 LAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPE-------KPKTFLKE  115 (186)
T ss_dssp             CEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTT-------HHHHHHHH
T ss_pred             cEeEcCCCCEeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHH-------HHHHHHHH
Confidence            3343345899999999987655554433 335666666677777788878999999988643211       12222221


Q ss_pred             hccceEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcH
Q 026511          158 RKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPW  211 (237)
Q Consensus       158 ~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW  211 (237)
                      -.  +.-.|+..+.= .-+.++.....-...-+.++++..||+|+.+-.|..+|
T Consensus       116 ~~--~~~~~~~~d~~-~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~g~~~~  166 (186)
T 1jfu_A          116 AN--LTRLGYFNDQK-AKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEW  166 (186)
T ss_dssp             TT--CCTTCCEECTT-CHHHHHHHTTTCCSSSSEEEEECTTSBEEEEEESCCCT
T ss_pred             cC--CCCCceEECCc-chHHHHhccccccCCCCEEEEECCCCCEEEEEecCCcc
Confidence            11  11122222211 11222222110001347899999999999998888776

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=91.68  E-value=3.4  Score=31.29  Aligned_cols=141  Identities=13%  Similarity=0.164  Sum_probs=81.7

Q ss_pred             hcccceeEecCCceeehhhhcCcceEEEEec-ChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHH
Q 026511           75 SLSNLKLRVDEKKIISVNNLRGIARLVICSG-PASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKE  153 (237)
Q Consensus        75 ~L~rL~V~l~~~r~v~l~~LR~~aRvVI~AG-~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~  153 (237)
                      .+-.+.+.-.+|+.+++.++++..-+|.... -=..+...+...+.+.+++.++|+-||-|..+..... +-+..+...+
T Consensus        10 ~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~-~~~~~~~~~~   88 (169)
T 2v1m_A           10 SIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQ-EPWAEAEIKK   88 (169)
T ss_dssp             SGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTC-CCSCHHHHHH
T ss_pred             ccccceeecCCCCCccHHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCC-CCCCHHHHHH
Confidence            3444555555689999999999654444333 2335667777778888889999999999988531100 1112233344


Q ss_pred             H-hhhhccceEEee-cccchH-----HHHHHHHHHHcCCCC---C-CCeEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026511          154 F-TRKRKRLWQLTP-VYVSEW-----SKWLDEQKRTAGISP---E-SPVYLSLRLDGRVRGSGVGYPPWNAFVAQL  218 (237)
Q Consensus       154 ~-~~~~~~~~~a~P-v~~~~W-----~~wi~eq~~~Agv~~---~-~gvyi~lr~dGrVr~SG~G~PpW~~~v~eL  218 (237)
                      + ...-.-.|-..- ++.+..     -+|+.++.  .|+..   . -+-++.+.+||+|+.+-.|..+..++.+.|
T Consensus        89 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~--~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i  162 (169)
T 2v1m_A           89 FVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQ--HGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDI  162 (169)
T ss_dssp             HHHHHHCCCSEEBCCCCCSSTTSCHHHHHHHHHS--CCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHH
T ss_pred             HHHHhcCCCCceEEEEeecCccccHHHHHHHhhc--CCccCCcccccceEEEECCCCCEEEEcCCCCCHHHHHHHH
Confidence            4 233233332221 111111     13443321  24322   1 257899999999999988887777666544

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=91.49  E-value=0.72  Score=35.16  Aligned_cols=121  Identities=10%  Similarity=0.161  Sum_probs=72.2

Q ss_pred             hhcccceeEecCCceeehhhhcCc-ceEEEEe-c-ChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHH
Q 026511           74 ESLSNLKLRVDEKKIISVNNLRGI-ARLVICS-G-PASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEE  150 (237)
Q Consensus        74 e~L~rL~V~l~~~r~v~l~~LR~~-aRvVI~A-G-~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~  150 (237)
                      +.+-.+.+.-.+|+.+++.++++. .-++... + .-..+...+...+.+.+++.+.++-||-|..+.         .+.
T Consensus        13 ~~~p~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~---------~~~   83 (160)
T 1xvw_A           13 ATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGP---------PPT   83 (160)
T ss_dssp             SBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCC---------HHH
T ss_pred             CCCCCeEeEcCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCC---------HHH
Confidence            334444454456899999999997 4444443 2 234666667677777777877899999887741         123


Q ss_pred             HHHHhhhhccceEEeecccchHH-HHHHHHHHHcCCCC---C--CCeEEEEeeCCeeecccCCCC
Q 026511          151 MKEFTRKRKRLWQLTPVYVSEWS-KWLDEQKRTAGISP---E--SPVYLSLRLDGRVRGSGVGYP  209 (237)
Q Consensus       151 ~~~~~~~~~~~~~a~Pv~~~~W~-~wi~eq~~~Agv~~---~--~gvyi~lr~dGrVr~SG~G~P  209 (237)
                      ..++.....-   -.|+..+.|. .=+.   +.-|+..   +  .+.++.+..||+|+.+..|.+
T Consensus        84 ~~~~~~~~~~---~~~~~~d~~~~~~~~---~~~~v~~~~~~~p~~~~~lid~~G~i~~~~~g~~  142 (160)
T 1xvw_A           84 HKIWATQSGF---TFPLLSDFWPHGAVS---QAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQP  142 (160)
T ss_dssp             HHHHHHHHTC---CSCEEECTTTTTHHH---HHTTCEETTTTEECSEEEEECTTSBEEEEEECCT
T ss_pred             HHHHHHhcCC---CceEEecCCcChHHH---HHcCCccccCCCeeeeEEEECCCCeEEEEEecCC
Confidence            3333333222   2355445431 1111   2225431   1  226889999999999998875

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=91.49  E-value=1.8  Score=33.13  Aligned_cols=136  Identities=12%  Similarity=0.163  Sum_probs=75.3

Q ss_pred             HHHHhhhhhhcccceeEec--CCceeehhhh-cCcceEEEEecChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCC
Q 026511           66 QLARLSREESLSNLKLRVD--EKKIISVNNL-RGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPS  142 (237)
Q Consensus        66 qlari~Ree~L~rL~V~l~--~~r~v~l~~L-R~~aRvVI~AG~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~  142 (237)
                      ++..+.-++.+-...+.-.  +++.+++.++ ++..-+|....+  .+-. ++...+.-++|.+.++-|+.|..+.+   
T Consensus        18 ~~~~~~~G~~~P~f~l~~~~~~g~~~~~~~~~~gk~vll~F~a~--~C~~-C~~~~~~l~~l~~~~v~vv~v~~~~~---   91 (168)
T 2b1k_A           18 NLESALIGKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWAT--WCPT-CRAEHQYLNQLSAQGIRVVGMNYKDD---   91 (168)
T ss_dssp             -CCCTTTTSBCCCCEEEESSSTTCEEEGGGGCCSSCEEEEEECT--TCHH-HHHHHHHHHHHHHTTCCEEEEEESCC---
T ss_pred             cccccccCCcCCCeEeecccCCCcEeehhHhcCCCEEEEEEECC--CCHH-HHHHHHHHHHHHHCCCEEEEEECCCC---
Confidence            3334445556666666555  6889999986 665544444433  3332 33333444556566899998887532   


Q ss_pred             CCccchHHHHHHhhhhccceEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhhcCC
Q 026511          143 FEFEESEEMKEFTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLP  219 (237)
Q Consensus       143 ~~f~~~~~~~~~~~~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~eLp  219 (237)
                           .+...++.......|...-.+.+  .. +.+   .-|+. .-+.++.+..||+|+.+-.|..+...+.+.+.
T Consensus        92 -----~~~~~~~~~~~~~~~~~~~~d~~--~~-~~~---~~~v~-~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~  156 (168)
T 2b1k_A           92 -----RQKAISWLKELGNPYALSLFDGD--GM-LGL---DLGVY-GAPETFLIDGNGIIRYRHAGDLNPRVWEEEIK  156 (168)
T ss_dssp             -----HHHHHHHHHHHCCCCSEEEEETT--CH-HHH---HHTCC-SSSEEEEECTTSBEEEEEESCCCHHHHHHTTH
T ss_pred             -----hHHHHHHHHHcCCCCceeeECcc--hH-HHH---HcCcc-ccCEEEEECCCCeEEEEEeCCCCHHHHHHHHH
Confidence                 12233333322222321001111  00 111   12542 25778899999999999999888888776653

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=91.43  E-value=2.6  Score=33.54  Aligned_cols=140  Identities=15%  Similarity=0.204  Sum_probs=80.8

Q ss_pred             hhcccceeEecCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCC-CCCCCccchHHH
Q 026511           74 ESLSNLKLRVDEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGN-IPSFEFEESEEM  151 (237)
Q Consensus        74 e~L~rL~V~l~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~-~~~~~f~~~~~~  151 (237)
                      +.+-.+.+.-.+|+.+++.++++..-+|....+ =..+...+...+.+.+++.++++-||-|..+.. .+.  -+..+..
T Consensus        26 ~~~p~f~l~~~~G~~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~--~~~~~~~  103 (190)
T 2vup_A           26 SSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQE--PGNEEEI  103 (190)
T ss_dssp             CSGGGSCCBBTTSSBCCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCC--CSCHHHH
T ss_pred             CcccCeEEEcCCCCEEEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCC--CCCHHHH
Confidence            344444444446899999999997655544332 346667777778888899999999999988631 111  1122333


Q ss_pred             HHHh-hhhccceEEee-cccc------hHHHHHHHHHHHcCCC--C--C-CCeEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026511          152 KEFT-RKRKRLWQLTP-VYVS------EWSKWLDEQKRTAGIS--P--E-SPVYLSLRLDGRVRGSGVGYPPWNAFVAQL  218 (237)
Q Consensus       152 ~~~~-~~~~~~~~a~P-v~~~------~W~~wi~eq~~~Agv~--~--~-~gvyi~lr~dGrVr~SG~G~PpW~~~v~eL  218 (237)
                      .++. ..-...|...- .+.+      -|+ |+.++  .-|+.  |  . .+.++.+.+||+|+.+-.|..++.++.+.|
T Consensus       104 ~~~~~~~~~~~~p~l~~~D~~~~~~~~~~~-~l~~~--~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i  180 (190)
T 2vup_A          104 KEFVCTKFKAEFPIMAKINVNGENAHPLYE-YMKKT--KPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKL  180 (190)
T ss_dssp             HHHHHHHHCCCSCBBCCCBSSSTTBCHHHH-HHHHH--SCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHH
T ss_pred             HHHHHHhcCCCeEEEeecccCcccccHHHH-HHHhh--cCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHHHHHH
Confidence            3433 22222221110 0111      222 23221  11321  1  1 127899999999999999988888877654

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=91.42  E-value=4.1  Score=31.94  Aligned_cols=132  Identities=17%  Similarity=0.172  Sum_probs=79.0

Q ss_pred             cceeEecCCceeehhhhcCcceEEEEecChh--HHHHHHhhchhhHHHHhh--cCcEEEEEEeCCCCCCCCccchHHHHH
Q 026511           78 NLKLRVDEKKIISVNNLRGIARLVICSGPAS--YIMESFKRSEPFTESLLE--RGVLVVSFTTDGNIPSFEFEESEEMKE  153 (237)
Q Consensus        78 rL~V~l~~~r~v~l~~LR~~aRvVI~AG~~e--~V~~al~~a~~~~~~L~~--r~VlVVPv~~~g~~~~~~f~~~~~~~~  153 (237)
                      ...+.-.+|+.+++++|+|..-+|..-.+.=  .+...+...+.+.+++.+  .++-||-|..+..      +..+..++
T Consensus        10 ~f~l~d~~G~~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~------d~~~~~~~   83 (170)
T 3me7_A           10 DITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPK------DTLEDIKR   83 (170)
T ss_dssp             TCEEEETTCCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTT------CCHHHHHH
T ss_pred             CeEEEcCCcCEEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCC------CCHHHHHH
Confidence            4445445689999999998765555555543  467777777778888865  5688888887531      12233334


Q ss_pred             Hhhhhc---cceEE-eecccchHHHHHHHHHHHcCCCC--------CCCeEEEEeeCCeeecccCCC-CcHHHHhhcCC
Q 026511          154 FTRKRK---RLWQL-TPVYVSEWSKWLDEQKRTAGISP--------ESPVYLSLRLDGRVRGSGVGY-PPWNAFVAQLP  219 (237)
Q Consensus       154 ~~~~~~---~~~~a-~Pv~~~~W~~wi~eq~~~Agv~~--------~~gvyi~lr~dGrVr~SG~G~-PpW~~~v~eLp  219 (237)
                      +...-.   ..|.. .+-+.++-.+..    +.-|+..        ..+.++.|..||+|+..=.|. |+-.++.+.|.
T Consensus        84 ~~~~~~~~~~~w~~l~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~~l~  158 (170)
T 3me7_A           84 FQKEYGIDGKGWKVVKAKTSEDLFKLL----DAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALR  158 (170)
T ss_dssp             HHHHTTCCSSSEEEEEESSHHHHHHHH----HHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHHHHH
T ss_pred             HHHHcCCCCCCeEEEeCCCHHHHHHHH----HHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            333322   34533 223333333322    2213321        135688999999999865664 66777776654

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=91.37  E-value=1.4  Score=34.15  Aligned_cols=121  Identities=12%  Similarity=0.024  Sum_probs=67.7

Q ss_pred             eeEecCCceeehhhhcCcceEEEEec--C-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhh
Q 026511           80 KLRVDEKKIISVNNLRGIARLVICSG--P-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTR  156 (237)
Q Consensus        80 ~V~l~~~r~v~l~~LR~~aRvVI~AG--~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~  156 (237)
                      .+.-.+|+.+++++++|.. +||.-.  + -..+...+...+.+.+++  .++-||-|..+.         .+...++..
T Consensus        26 ~l~~~~G~~v~l~~~~gk~-vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~~v~vv~is~d~---------~~~~~~~~~   93 (163)
T 1psq_A           26 SLTTTDLSKKSLADFDGKK-KVLSVVPSIDTGICSTQTRRFNEELAGL--DNTVVLTVSMDL---------PFAQKRWCG   93 (163)
T ss_dssp             EEECTTSCEEEGGGGTTSE-EEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESSC---------HHHHHHHHH
T ss_pred             EEEcCCCcEeeHHHhCCCE-EEEEEECCCCCCccHHHHHHHHHHHHHc--CCcEEEEEECCC---------HHHHHHHHH
Confidence            3333458999999999964 333322  2 345666566555555556  689888887642         123333333


Q ss_pred             hhcc-ceEEeecccchHHHHHHHHHHHcCCCCC-----CCeEEEEeeCCeeecccCCCCcH-----HHHhhcC
Q 026511          157 KRKR-LWQLTPVYVSEWSKWLDEQKRTAGISPE-----SPVYLSLRLDGRVRGSGVGYPPW-----NAFVAQL  218 (237)
Q Consensus       157 ~~~~-~~~a~Pv~~~~W~~wi~eq~~~Agv~~~-----~gvyi~lr~dGrVr~SG~G~PpW-----~~~v~eL  218 (237)
                      ...- .|   |+..+....=+.+   .-|+...     .+..+++..||+|+....|..+|     .++++.|
T Consensus        94 ~~~~~~~---~~l~D~~~~~~~~---~~gv~~~~~g~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~l~~l  160 (163)
T 1psq_A           94 AEGLDNA---IMLSDYFDHSFGR---DYALLINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAA  160 (163)
T ss_dssp             HHTCTTS---EEEECTTTCHHHH---HHTCBCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHH
T ss_pred             hcCCCCc---EEecCCchhHHHH---HhCCccccCCceEEEEEEEcCCCeEEEEEecCCcCCCCCHHHHHHHH
Confidence            3223 34   4332311111111   1254321     36889999999999999875444     4555543

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=91.32  E-value=2.4  Score=31.07  Aligned_cols=122  Identities=11%  Similarity=0.151  Sum_probs=72.5

Q ss_pred             CCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhhccceE
Q 026511           85 EKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQ  163 (237)
Q Consensus        85 ~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~~~~~  163 (237)
                      +++.+++.++++..-+|...++ =.++...+...+.+.+++.+. +.++.|..+......   ..+...++.....-.| 
T Consensus        18 ~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~-   92 (148)
T 2b5x_A           18 NGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ-LNVVAVHMPRSEDDL---DPGKIKETAAEHDITQ-   92 (148)
T ss_dssp             SCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-SEEEEEECCCSTTTS---SHHHHHHHHHHTTCCS-
T ss_pred             cCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEEcCCCcccc---CHHHHHHHHHHcCCCc-
Confidence            4789999999886655554443 345656666666677777766 888888875432211   1223333333322222 


Q ss_pred             EeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026511          164 LTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQL  218 (237)
Q Consensus       164 a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~eL  218 (237)
                        |+..+.-..    -.+.-|+. .-+.++.+..||+|..+..|.++..++.+.|
T Consensus        93 --~~~~d~~~~----~~~~~~v~-~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  140 (148)
T 2b5x_A           93 --PIFVDSDHA----LTDAFENE-YVPAYYVFDKTGQLRHFQAGGSGMKMLEKRV  140 (148)
T ss_dssp             --CEEECSSCH----HHHHTCCC-CSSEEEEECTTCBEEEEEESCSTTHHHHHHH
T ss_pred             --ceEECCchh----HHHHhCCC-CCCEEEEECCCCcEEEEecCCCCHHHHHHHH
Confidence              332222111    11122542 2578999999999999999988777665543

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=91.24  E-value=3.9  Score=31.11  Aligned_cols=131  Identities=11%  Similarity=0.009  Sum_probs=77.2

Q ss_pred             eeEecCCceeehhhhcCcceEEEEecC-hhH-HHHHHhhchhhHHHHhh----cCcEEEEEEeCCCCCCCCccchHHHHH
Q 026511           80 KLRVDEKKIISVNNLRGIARLVICSGP-ASY-IMESFKRSEPFTESLLE----RGVLVVSFTTDGNIPSFEFEESEEMKE  153 (237)
Q Consensus        80 ~V~l~~~r~v~l~~LR~~aRvVI~AG~-~e~-V~~al~~a~~~~~~L~~----r~VlVVPv~~~g~~~~~~f~~~~~~~~  153 (237)
                      .+.-.+|+.+++.++++..-+|...++ =.. +...+...+.+.+++.+    .++-||-|..+.+.     +..+...+
T Consensus        10 ~l~~~~G~~~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~-----d~~~~~~~   84 (171)
T 2rli_A           10 HLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPER-----DDVEAMAR   84 (171)
T ss_dssp             EEEETTSCEEETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTT-----CCHHHHHH
T ss_pred             EEEeCCCCEEeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCC-----CCHHHHHH
Confidence            343346899999999986544433333 233 77777777777888875    58999998886321     11223344


Q ss_pred             HhhhhccceEEeecccchHHHHHHHHHHHcCCC--CC------------CCeEEEEeeCCeeecccCCCCcHHHHhhcCC
Q 026511          154 FTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGIS--PE------------SPVYLSLRLDGRVRGSGVGYPPWNAFVAQLP  219 (237)
Q Consensus       154 ~~~~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~--~~------------~gvyi~lr~dGrVr~SG~G~PpW~~~v~eLp  219 (237)
                      +...-...|....-..+    -+.+-.+.-|+.  |.            .+.++++.+||+|+.+-.|..+..++.+.|.
T Consensus        85 ~~~~~~~~~~~l~~~~~----~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~  160 (171)
T 2rli_A           85 YVQDFHPRLLGLTGSTK----QVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVR  160 (171)
T ss_dssp             HHHTTCTTCCEEECCHH----HHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHH
T ss_pred             HHHHcCCCeEEEeCCHH----HHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHH
Confidence            44433344533321111    011112222542  11            1268999999999999888888887776653

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=91.17  E-value=1.7  Score=34.26  Aligned_cols=132  Identities=16%  Similarity=0.204  Sum_probs=72.4

Q ss_pred             hhhhhhcccceeEecCC--ceeehhhhcCcceEEEEecChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccc
Q 026511           70 LSREESLSNLKLRVDEK--KIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEE  147 (237)
Q Consensus        70 i~Ree~L~rL~V~l~~~--r~v~l~~LR~~aRvVI~AG~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~  147 (237)
                      +.-+..+-.+.+.-.++  +.+++.++++..-+|...++  .+.. ++...+.-++|.+.++-||-|..+.+        
T Consensus        30 ~~~G~~~P~f~l~~~~g~~~~~~l~~~~gk~vll~F~a~--~C~~-C~~~~~~l~~l~~~~v~vv~vs~~d~--------   98 (176)
T 3kh7_A           30 ALIGKPFPAFDLPSVQDPARRLTEADLKGKPALVNVWGT--WCPS-CRVEHPELTRLAEQGVVIYGINYKDD--------   98 (176)
T ss_dssp             TTTTSBCCCCEEEBSSCTTSEEEGGGGCSSCEEEEEECT--TCHH-HHHHHHHHHHHHHTTCEEEEEEESCC--------
T ss_pred             cccCCcCCCcEecccCCCCceecHHHhCCCEEEEEEECC--cCHH-HHHHHHHHHHHHHCCCEEEEEeCCCC--------
Confidence            33344444555554445  88999999987655555433  3322 22223333445555999999987421        


Q ss_pred             hHHHHHHhhhhccceEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhhcCC
Q 026511          148 SEEMKEFTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLP  219 (237)
Q Consensus       148 ~~~~~~~~~~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~eLp  219 (237)
                      .+...++...-.-.|...-.+.+   .-+.+   .-|+. .-+.++.+..||+|+.+-.|..+...+.+.|.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~d~~---~~~~~---~~~v~-~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~  163 (176)
T 3kh7_A           99 NAAAIKWLNELHNPYLLSISDAD---GTLGL---DLGVY-GAPETYLIDKQGIIRHKIVGVVDQKVWREQLA  163 (176)
T ss_dssp             HHHHHHHHHHTTCCCSEEEEETT---CHHHH---HHTCC-SSCEEEEECTTCBEEEEEESCCCHHHHHHHTH
T ss_pred             HHHHHHHHHHcCCCCceEEECCc---chHHH---HcCCC-CCCeEEEECCCCeEEEEEcCCCCHHHHHHHHH
Confidence            22233333332222221001111   11111   12442 24778999999999999999988877766553

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=90.97  E-value=3.2  Score=29.59  Aligned_cols=129  Identities=15%  Similarity=0.232  Sum_probs=71.2

Q ss_pred             ceeEecCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhh
Q 026511           79 LKLRVDEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRK  157 (237)
Q Consensus        79 L~V~l~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~  157 (237)
                      +.+.-.+++.+++.++++..-+|...++ =.++...+...+.+.++ ...++.+|.+.....+..   ...+...++...
T Consensus         5 f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~-~~~~~~~v~i~~~~~~~~---~~~~~~~~~~~~   80 (138)
T 4evm_A            5 FELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKE-AGDDYVVLTVVSPGHKGE---QSEADFKNWYKG   80 (138)
T ss_dssp             CEEEBTTSCEEEGGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHT-CTTTEEEEEEECTTSTTC---CCHHHHHHHHTT
T ss_pred             ceeECCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHH-hCCCcEEEEEEcCCCCch---hhHHHHHHHHhh
Confidence            3344456899999999987655544433 23455555555555555 456888888865332111   112222332222


Q ss_pred             hccceEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026511          158 RKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQL  218 (237)
Q Consensus       158 ~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~eL  218 (237)
                        ..+.-.|+..+.=..    -.+.-|+. .-+.++.+..||+|+.+-.|..+=.++.+.|
T Consensus        81 --~~~~~~~~~~d~~~~----~~~~~~v~-~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  134 (138)
T 4evm_A           81 --LDYKNLPVLVDPSGK----LLETYGVR-SYPTQAFIDKEGKLVKTHPGFMEKDAILQTL  134 (138)
T ss_dssp             --CCCTTCCEEECTTCH----HHHHTTCC-SSSEEEEECTTCCEEEEEESCCCHHHHHHHH
T ss_pred             --cCCCCeeEEECcchH----HHHHcCcc-cCCeEEEECCCCcEEEeecCCCcHHHHHHHH
Confidence              122122332221111    11122542 2588999999999999999988766665543

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=90.87  E-value=2  Score=32.70  Aligned_cols=121  Identities=17%  Similarity=0.222  Sum_probs=76.2

Q ss_pred             hhhcccceeEecCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHH
Q 026511           73 EESLSNLKLRVDEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEM  151 (237)
Q Consensus        73 ee~L~rL~V~l~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~  151 (237)
                      .+.+-.+.+.-.+++.+++.++++..-+|...++ =.++...+...+.+.+++.+.++.+|.|..+....  +|      
T Consensus        18 G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~--~~------   89 (158)
T 3hdc_A           18 GALAPNFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFP--EK------   89 (158)
T ss_dssp             TSBCCCCEEECTTSCEEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCC--GG------
T ss_pred             CCcCCCceeEcCCCCEEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHH--HH------
Confidence            3444455555556899999999987545444433 34667777778888888888899999998865211  11      


Q ss_pred             HHHhhhhccceEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHH
Q 026511          152 KEFTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWN  212 (237)
Q Consensus       152 ~~~~~~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~  212 (237)
                         .......|   |+..+.-.    +-.+.-|+. .-+-++.+..||+|+.+-.|..+|+
T Consensus        90 ---~~~~~~~~---~~~~d~~~----~~~~~~~v~-~~P~~~lid~~G~i~~~~~G~~~~~  139 (158)
T 3hdc_A           90 ---YRRAPVSF---NFLSDATG----QVQQRYGAN-RLPDTFIVDRKGIIRQRVTGGIEWD  139 (158)
T ss_dssp             ---GGGCCCSC---EEEECTTS----HHHHHTTCC-SSSEEEEECTTSBEEEEEESCCCTT
T ss_pred             ---HHHcCCCc---eEEECchH----HHHHHhCCC-CcceEEEEcCCCCEEEEEeCCCccc
Confidence               11111222   32222111    111222543 2578899999999999999998885

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=90.62  E-value=2  Score=31.43  Aligned_cols=132  Identities=13%  Similarity=0.154  Sum_probs=79.2

Q ss_pred             hhhcccceeEecCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHH
Q 026511           73 EESLSNLKLRVDEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEM  151 (237)
Q Consensus        73 ee~L~rL~V~l~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~  151 (237)
                      .+.+-.+.+.-.+++.+++.+ ++..-+|....+ =.++...+...+.+.+.+.+.++-+|.|..+....     ..+..
T Consensus        12 g~~~p~~~l~~~~g~~~~l~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~-----~~~~~   85 (145)
T 3erw_A           12 PAVPAVFLMKTIEGEDISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQ-----NQQVV   85 (145)
T ss_dssp             CCSCCEEEEECTTSCEEEESC-TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSS-----CHHHH
T ss_pred             CCcCCCceeecCCCCEEeHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcC-----CHHHH
Confidence            344444555555689999999 776555544433 35666677777777888877889999998854211     12233


Q ss_pred             HHHhhhhccceEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026511          152 KEFTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQL  218 (237)
Q Consensus       152 ~~~~~~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~eL  218 (237)
                      .++.....-.   .|+..+.-.. +   .+.-|+. .-+.++.+..||+|+.+-.|..+..++.+.|
T Consensus        86 ~~~~~~~~~~---~~~~~d~~~~-~---~~~~~v~-~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  144 (145)
T 3erw_A           86 EDFIKANKLT---FPIVLDSKGE-L---MKEYHII-TIPTSFLLNEKGEIEKTKIGPMTAEQLKEWT  144 (145)
T ss_dssp             HHHHHHTTCC---SCEEECSSSH-H---HHHTTCC-EESEEEEECTTCCEEEEEESCCCHHHHHHHH
T ss_pred             HHHHHHcCCc---eeEEEcCchh-H---HHhcCcC-ccCeEEEEcCCCcEEEEEcCCcCHHHHHHhh
Confidence            3333322222   2322221111 1   1122432 2488999999999999999998887776543

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=90.47  E-value=3.9  Score=31.09  Aligned_cols=114  Identities=11%  Similarity=0.068  Sum_probs=69.1

Q ss_pred             eEecCCceeehhhhcCcceEEEEe-c-ChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhh
Q 026511           81 LRVDEKKIISVNNLRGIARLVICS-G-PASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKR  158 (237)
Q Consensus        81 V~l~~~r~v~l~~LR~~aRvVI~A-G-~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~  158 (237)
                      +.-.+|+++++.++++..-++... + .-..+...+...+.+.+++.++|+-||-|..+         ..+...++...-
T Consensus        20 l~~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d---------~~~~~~~~~~~~   90 (163)
T 3gkn_A           20 LSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRD---------SVKSHDNFCAKQ   90 (163)
T ss_dssp             EECSTTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESS---------CHHHHHHHHHHH
T ss_pred             ccCCCCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCC---------CHHHHHHHHHHh
Confidence            444568999999999984333332 2 25677888888889999999999999999884         122333333332


Q ss_pred             ccceEEeecccchHHHHHHHHHHHcCCCCC-----------CCeEEEEeeCCeeecccCCCCc
Q 026511          159 KRLWQLTPVYVSEWSKWLDEQKRTAGISPE-----------SPVYLSLRLDGRVRGSGVGYPP  210 (237)
Q Consensus       159 ~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~~-----------~gvyi~lr~dGrVr~SG~G~Pp  210 (237)
                      .-.|   |+..+ ...=+.   +.-|+...           .+-++++..||+|+..-.|..+
T Consensus        91 ~~~~---~~~~d-~~~~~~---~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~~~~~  146 (163)
T 3gkn_A           91 GFAF---PLVSD-GDEALC---RAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAWRKVKV  146 (163)
T ss_dssp             CCSS---CEEEC-TTCHHH---HHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEECSCCS
T ss_pred             CCCc---eEEEC-CcHHHH---HHhCCccccccccccccCcceEEEEECCCCeEEEEEcCCCc
Confidence            2222   22211 111111   11243221           4668899999999977655543

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=90.37  E-value=1.3  Score=34.36  Aligned_cols=126  Identities=12%  Similarity=0.180  Sum_probs=69.6

Q ss_pred             cCCceeehhhhcCcceEEEEe-cChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHh-hhhccc
Q 026511           84 DEKKIISVNNLRGIARLVICS-GPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFT-RKRKRL  161 (237)
Q Consensus        84 ~~~r~v~l~~LR~~aRvVI~A-G~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~-~~~~~~  161 (237)
                      .+|+.++++++++..-+|... -.-..+. .+...+.+.+++.+.|+.||-|..+..... +-+..+...++. ..-...
T Consensus        20 ~~G~~~~l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~-~~d~~~~~~~~~~~~~~~~   97 (171)
T 3cmi_A           20 KKGQPFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQ-EPGSDEEIAQFCQLNYGVT   97 (171)
T ss_dssp             TTSCBCCGGGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC-------------------CCC
T ss_pred             CCCCEecHHHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCC-CCCCHHHHHHHHHhccCCC
Confidence            358999999999965444432 2233466 667777788889999999999987421000 000011112222 111112


Q ss_pred             eEEeeccc----------chHHHHHHHHHHHcCCCCCCC------eEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026511          162 WQLTPVYV----------SEWSKWLDEQKRTAGISPESP------VYLSLRLDGRVRGSGVGYPPWNAFVAQL  218 (237)
Q Consensus       162 ~~a~Pv~~----------~~W~~wi~eq~~~Agv~~~~g------vyi~lr~dGrVr~SG~G~PpW~~~v~eL  218 (237)
                         .|+..          ..|..+..+   .-|+.. -+      .++.+.+||+|+.+-.|..+...+.+.|
T Consensus        98 ---~p~~~d~d~~~~~~~~~~~~~~~~---~~~v~~-~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i  163 (171)
T 3cmi_A           98 ---FPIMKKIDVNGGNEDPVYKFLKSQ---KSGMLG-LRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETI  163 (171)
T ss_dssp             ---SCBBCCCBSSSTTBCHHHHHHHHH---SCCSSS-CCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHH
T ss_pred             ---ceEEeeccCCCccchHHHHHHHhc---cCCcCC-CCcccccceEEEECCCCCEEEEeCCCCCHHHHHHHH
Confidence               23221          234444322   123321 24      7899999999999999987777665543

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=90.01  E-value=0.48  Score=39.38  Aligned_cols=133  Identities=14%  Similarity=0.115  Sum_probs=76.6

Q ss_pred             HHHhhhhhhcccceeEe---cCCceeehhhhcCcceEEEEe-cC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCC
Q 026511           67 LARLSREESLSNLKLRV---DEKKIISVNNLRGIARLVICS-GP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIP  141 (237)
Q Consensus        67 lari~Ree~L~rL~V~l---~~~r~v~l~~LR~~aRvVI~A-G~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~  141 (237)
                      ...+.-...+-.+.+.-   ++++.++|+++++..-+|..- ++ -..+...+...+.+.+++.++||-||-|..+.   
T Consensus        37 ~~~l~~G~~aP~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~---  113 (222)
T 3ztl_A           37 TMVLLPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDS---  113 (222)
T ss_dssp             ---CCSSEECCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSC---
T ss_pred             cccccCCCCCCCeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCC---
Confidence            34455666666666652   235999999999864333322 22 56677788888888999999999999988742   


Q ss_pred             CCCccchHHHHHHhhhhccc----eEEeecccchHHHHHHHHHHHcCCCC-----CCCeEEEEeeCCeeecccCCCCcHH
Q 026511          142 SFEFEESEEMKEFTRKRKRL----WQLTPVYVSEWSKWLDEQKRTAGISP-----ESPVYLSLRLDGRVRGSGVGYPPWN  212 (237)
Q Consensus       142 ~~~f~~~~~~~~~~~~~~~~----~~a~Pv~~~~W~~wi~eq~~~Agv~~-----~~gvyi~lr~dGrVr~SG~G~PpW~  212 (237)
                            .+...++...-++.    ..-+|+..+.=    .+-.+.-|+..     .-+-+++|..||+|+..-.|..+..
T Consensus       114 ------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~----~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~  183 (222)
T 3ztl_A          114 ------QYSHLAWDNLDRKSGGLGHMKIPLLADRK----QEISKAYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVG  183 (222)
T ss_dssp             ------HHHHHHHHHSCGGGTSCCSCSSCEEECSS----SHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBC
T ss_pred             ------HHHHHHHHHHhhhhccccccceeEEeCCc----hHHHHHcCCeecCCCCccceEEEECCCCeEEEEEecCCCCC
Confidence                  11122222211000    12223322210    11112235432     2356899999999999988775543

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=89.83  E-value=0.93  Score=35.37  Aligned_cols=121  Identities=12%  Similarity=0.110  Sum_probs=68.5

Q ss_pred             eeEecCCceeehhhhcCcceEEEEe-c-ChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhh
Q 026511           80 KLRVDEKKIISVNNLRGIARLVICS-G-PASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRK  157 (237)
Q Consensus        80 ~V~l~~~r~v~l~~LR~~aRvVI~A-G-~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~  157 (237)
                      .+.-.+++.+++.++++..-++... + .-..+...+...+.+.+++  .++-||-|..+.         .+...++...
T Consensus        31 ~l~~~~G~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~~v~vv~Is~d~---------~~~~~~~~~~   99 (171)
T 2yzh_A           31 VVVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM--EGVDVTVVSMDL---------PFAQKRFCES   99 (171)
T ss_dssp             EEEETTSCEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESSC---------HHHHHHHHHH
T ss_pred             EEECCCCCEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--CCceEEEEeCCC---------HHHHHHHHHH
Confidence            3333458999999999864343332 2 2345566666555555566  788888887642         1233333333


Q ss_pred             hcc-ceEEeecccchHHHHHHHHHHHcCCCC------C--CCeEEEEeeCCeeecccCC-----CCcHHHHhhcC
Q 026511          158 RKR-LWQLTPVYVSEWSKWLDEQKRTAGISP------E--SPVYLSLRLDGRVRGSGVG-----YPPWNAFVAQL  218 (237)
Q Consensus       158 ~~~-~~~a~Pv~~~~W~~wi~eq~~~Agv~~------~--~gvyi~lr~dGrVr~SG~G-----~PpW~~~v~eL  218 (237)
                      ..- .|   |+..+...    .+.+.-|+..      +  .+-.+++..||+|+..-.|     .|+..++++.|
T Consensus       100 ~~~~~~---~~l~D~~~----~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~ll~~l  167 (171)
T 2yzh_A          100 FNIQNV---TVASDFRY----RDMEKYGVLIGEGALKGILARAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKV  167 (171)
T ss_dssp             TTCCSS---EEEECTTT----CGGGGGTCBBCSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCCHHHHHHH
T ss_pred             cCCCCe---EEeecCcc----CcHHHhCCEecccccCCceeeEEEEEcCCCeEEEEEeCCCcCCCCCHHHHHHHH
Confidence            222 33   33323110    1121224421      1  3688999999999998765     55567776654

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=89.75  E-value=6.2  Score=31.00  Aligned_cols=141  Identities=17%  Similarity=0.254  Sum_probs=79.2

Q ss_pred             hhhcccceeEecCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHH
Q 026511           73 EESLSNLKLRVDEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEM  151 (237)
Q Consensus        73 ee~L~rL~V~l~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~  151 (237)
                      ...+-.+.+.-.+|+.+++.++++..-+|...++ =..+...+...+.+.+++.++++-||-|..+..... +-+..+..
T Consensus        26 g~~~p~f~l~~~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~-e~~~~~~~  104 (181)
T 2p31_A           26 EQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQ-EPDSNKEI  104 (181)
T ss_dssp             -CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTC-CCSCHHHH
T ss_pred             CCccCceEeecCCCCEecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCC-CCCCHHHH
Confidence            3445555555556899999999996544443322 346777777778888889999999999987531100 01112233


Q ss_pred             HHHhhh-hccceEEee-cccc------hHHHHHHHHHHHcCCCCCCC-eEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026511          152 KEFTRK-RKRLWQLTP-VYVS------EWSKWLDEQKRTAGISPESP-VYLSLRLDGRVRGSGVGYPPWNAFVAQL  218 (237)
Q Consensus       152 ~~~~~~-~~~~~~a~P-v~~~------~W~~wi~eq~~~Agv~~~~g-vyi~lr~dGrVr~SG~G~PpW~~~v~eL  218 (237)
                      .++... -...|-... ++.+      .| .|..+..-  + .+.-. .++.+.+||+|+.+-.|..+..++.+.+
T Consensus       105 ~~~~~~~~~~~~p~~~~~d~~g~~~~~~~-~~~~~~~P--~-~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i  176 (181)
T 2p31_A          105 ESFARRTYSVSFPMFSKIAVTGTGAHPAF-KYLAQTSG--K-EPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQI  176 (181)
T ss_dssp             HHHHHHHHCCCSCBBCCCCCSSTTSCHHH-HHHHHHHS--C-CCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHH
T ss_pred             HHHHHhhcCCCceeEeecccCCccchhhh-hhhhhcCC--C-ccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHH
Confidence            333332 122221110 0111      11 23222210  0 01111 5889999999999988888888776654

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=89.06  E-value=6.2  Score=30.85  Aligned_cols=121  Identities=12%  Similarity=0.206  Sum_probs=67.9

Q ss_pred             ccceeE-ecCCceeehhhhcCcc-eEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHH
Q 026511           77 SNLKLR-VDEKKIISVNNLRGIA-RLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKE  153 (237)
Q Consensus        77 ~rL~V~-l~~~r~v~l~~LR~~a-RvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~  153 (237)
                      -.+.+. -.+|+.+++.++++.. -+|....+ =.++...+...+.+.+++.+.++.||.|..+..... +.+..+...+
T Consensus        25 p~f~l~~~~~G~~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~-~~d~~~~~~~  103 (196)
T 2ywi_A           25 PPFALTNVIDGNVVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQY-PEDSPENMKK  103 (196)
T ss_dssp             CCCEEEETTTCCEEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTC-GGGSHHHHHH
T ss_pred             CceeeeecCCCCEEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccc-cccCHHHHHH
Confidence            334444 3458999999999975 34433322 346666777777788888888999999988542110 1112223333


Q ss_pred             HhhhhccceEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccC
Q 026511          154 FTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGV  206 (237)
Q Consensus       154 ~~~~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~  206 (237)
                      +.......|   |+..+.=.. +.   +.-|+. .-+.++.+.+||+|+.++.
T Consensus       104 ~~~~~~~~~---~~~~d~~~~-~~---~~~~v~-~~P~~~lid~~G~i~~~~~  148 (196)
T 2ywi_A          104 VAEELGYPF---PYLYDETQE-VA---KAYDAA-CTPDFYIFDRDLKCVYRGQ  148 (196)
T ss_dssp             HHHHHTCCS---CEEECSSCH-HH---HHHTCC-EESEEEEEETTCBEEEEEC
T ss_pred             HHHHcCCCc---eEEECCchH-HH---HHhCCC-CCCeEEEEcCCCeEEEccc
Confidence            333222222   222111000 11   111432 2477899999999999854

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=88.91  E-value=3  Score=31.91  Aligned_cols=114  Identities=16%  Similarity=0.174  Sum_probs=65.2

Q ss_pred             ceeEecCCceeehhhhcCcceEEEEe---c-ChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHH
Q 026511           79 LKLRVDEKKIISVNNLRGIARLVICS---G-PASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEF  154 (237)
Q Consensus        79 L~V~l~~~r~v~l~~LR~~aRvVI~A---G-~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~  154 (237)
                      ..+.-.+|+.++++++++..++|++.   + .-..+...+...+.+.+++.+++ -||-|..+         ..+...++
T Consensus        16 f~l~~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~d---------~~~~~~~~   85 (159)
T 2a4v_A           16 LSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA-AVFGLSAD---------SVTSQKKF   85 (159)
T ss_dssp             CEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EEEEEESC---------CHHHHHHH
T ss_pred             eEEECCCCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeCC---------CHHHHHHH
Confidence            33333458999999999874433322   2 23567777778888888899888 77777664         12233333


Q ss_pred             hhhhccceEEeecccchHHHHHHHHHHHcCCCCC-----CCeEEEEeeCCeeecccCCCCc
Q 026511          155 TRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPE-----SPVYLSLRLDGRVRGSGVGYPP  210 (237)
Q Consensus       155 ~~~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~~-----~gvyi~lr~dGrVr~SG~G~Pp  210 (237)
                      .....-.|   |+-.+.=.+ +.++   -|+...     ....+++ .||+|+..-.|..|
T Consensus        86 ~~~~~~~~---~~l~D~~~~-~~~~---~gv~~~p~~g~~~~~~li-~~G~i~~~~~g~~~  138 (159)
T 2a4v_A           86 QSKQNLPY---HLLSDPKRE-FIGL---LGAKKTPLSGSIRSHFIF-VDGKLKFKRVKISP  138 (159)
T ss_dssp             HHHHTCSS---EEEECTTCH-HHHH---HTCBSSSSSCBCCEEEEE-ETTEEEEEEESCCH
T ss_pred             HHHhCCCc---eEEECCccH-HHHH---hCCcccccCCccceEEEE-cCCEEEEEEccCCc
Confidence            33322333   443221000 1111   144221     1234456 99999999999765

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=88.83  E-value=2.4  Score=33.62  Aligned_cols=61  Identities=13%  Similarity=0.058  Sum_probs=45.3

Q ss_pred             cccceeEecCCceeehhhhcCcceEEEEecC---hhHHHHHHhhchhhHHHHhhcCcEEEEEEeC
Q 026511           76 LSNLKLRVDEKKIISVNNLRGIARLVICSGP---ASYIMESFKRSEPFTESLLERGVLVVSFTTD  137 (237)
Q Consensus        76 L~rL~V~l~~~r~v~l~~LR~~aRvVI~AG~---~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~  137 (237)
                      +-.+.+.-.+|+.++|++|||. -+||.-.+   -..+...+...+.+.+++.++|+-||-|..+
T Consensus        31 aP~f~l~~~~G~~v~l~d~~Gk-~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D   94 (179)
T 3ixr_A           31 LLNHPLMLSGSTCKTLSDYTNQ-WLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRD   94 (179)
T ss_dssp             HHHCCEEEGGGEEECGGGGTTS-EEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESC
T ss_pred             CCCeeEECCCCCEEeHHHHCCC-CEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence            3334444456899999999998 34444332   4567788888888999999999999988764

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=88.82  E-value=1.2  Score=34.81  Aligned_cols=118  Identities=14%  Similarity=0.204  Sum_probs=65.0

Q ss_pred             cCCceeehhhhcCcceEEEEe-cC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhhccc
Q 026511           84 DEKKIISVNNLRGIARLVICS-GP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRL  161 (237)
Q Consensus        84 ~~~r~v~l~~LR~~aRvVI~A-G~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~~~  161 (237)
                      .+|+.++|++|||..-++... ++ -..+..-+...+.+.+++.+.|+.++-|..+.         .+...++..+..-.
T Consensus        18 ~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~---------~~~~~~~~~~~~~~   88 (157)
T 4g2e_A           18 TELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDP---------PFSNKAFKEHNKLN   88 (157)
T ss_dssp             TTSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSC---------HHHHHHHHHHTTCC
T ss_pred             CCCCEEeHHHHCCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccc---------hhHHHHHHHHcCCc
Confidence            358999999999975444433 33 34566667777778888999999999887632         22333443333333


Q ss_pred             eEEeecccchHHHHHHHHHH-HcCCC------CC----CCeEEEEeeCCeeecccC-----CCCcHHHHhhcC
Q 026511          162 WQLTPVYVSEWSKWLDEQKR-TAGIS------PE----SPVYLSLRLDGRVRGSGV-----GYPPWNAFVAQL  218 (237)
Q Consensus       162 ~~a~Pv~~~~W~~wi~eq~~-~Agv~------~~----~gvyi~lr~dGrVr~SG~-----G~PpW~~~v~eL  218 (237)
                      |   |+-.|.     +.++. .-|+.      ++    .+..++|..||+|+.+.+     +.|+.+++.+.|
T Consensus        89 ~---p~l~D~-----~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l  153 (157)
T 4g2e_A           89 F---TILSDY-----NREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVV  153 (157)
T ss_dssp             S---EEEECT-----TSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHH
T ss_pred             E---EEEEcC-----CcHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHH
Confidence            3   322111     01111 11442      11    123578999999998754     456677666543

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=88.78  E-value=1.4  Score=36.96  Aligned_cols=137  Identities=6%  Similarity=-0.029  Sum_probs=76.1

Q ss_pred             HHHhhhhhhcccceeEec--CC--ceeehhhh-cCcceEEEEecChh---HHHHHHhhchhhHHHHhhcCcEEEEEEeCC
Q 026511           67 LARLSREESLSNLKLRVD--EK--KIISVNNL-RGIARLVICSGPAS---YIMESFKRSEPFTESLLERGVLVVSFTTDG  138 (237)
Q Consensus        67 lari~Ree~L~rL~V~l~--~~--r~v~l~~L-R~~aRvVI~AG~~e---~V~~al~~a~~~~~~L~~r~VlVVPv~~~g  138 (237)
                      |..+.-.+.+-...+.-.  +|  +.++|+++ ++.. +||.-.++.   .+...+...+.+.+++.+.|+-||-|..+.
T Consensus        22 M~~l~~G~~aP~F~l~~~~~~G~~~~v~L~d~~~Gk~-vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~  100 (221)
T 2c0d_A           22 MKLSLVTKKAYNFTAQGLNKNNEIINVDLSSFIGQKY-CCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDS  100 (221)
T ss_dssp             ----CTTSBCCCCEEEEECTTSCEEEEEGGGGTTTCE-EEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSC
T ss_pred             cccCCCCCCCCCeEEeccccCCCccEEeHHHHcCCCe-EEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            444444555555555544  67  89999999 9864 344333222   456667777778888888999999888732


Q ss_pred             CCCCCCccchHHHHHHhhhhccc----eEEeecccchHHHHHHHHH-HHcCCC----CCCCeEEEEeeCCeeecccCCC-
Q 026511          139 NIPSFEFEESEEMKEFTRKRKRL----WQLTPVYVSEWSKWLDEQK-RTAGIS----PESPVYLSLRLDGRVRGSGVGY-  208 (237)
Q Consensus       139 ~~~~~~f~~~~~~~~~~~~~~~~----~~a~Pv~~~~W~~wi~eq~-~~Agv~----~~~gvyi~lr~dGrVr~SG~G~-  208 (237)
                               .+...++...-.+.    -.-.|+..+.     +.++ +.-|+.    ...+.+++|..||+|+..-.|. 
T Consensus       101 ---------~~~~~~~~~~~~~~~g~~~~~fp~l~D~-----~~~~~~~ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~  166 (221)
T 2c0d_A          101 ---------VYSHLAWKNMPIEKGGIGNVEFTLVSDI-----NKDISKNYNVLYDNSFALRGLFIIDKNGCVRHQTVNDL  166 (221)
T ss_dssp             ---------HHHHHHHHHSCGGGTCCCSCSSEEEECT-----TSHHHHHTTCEETTTEECEEEEEECTTSBEEEEEEECT
T ss_pred             ---------HHHHHHHHHHhhhhcCccCCceEEEECC-----chHHHHHcCCcccCCCccceEEEECCCCeEEEEEecCC
Confidence                     12233333221000    1122443331     1111 122542    1246788999999999997663 


Q ss_pred             ---CcHHHHhhcC
Q 026511          209 ---PPWNAFVAQL  218 (237)
Q Consensus       209 ---PpW~~~v~eL  218 (237)
                         ++..++++.|
T Consensus       167 ~~~~~~~ell~~l  179 (221)
T 2c0d_A          167 PIGRNVQEVLRTI  179 (221)
T ss_dssp             TCCCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHH
Confidence               3455665543

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=88.46  E-value=1.9  Score=32.89  Aligned_cols=128  Identities=13%  Similarity=0.091  Sum_probs=73.6

Q ss_pred             eeEecCCceeehhhhcCcceEEEEecCh-h-HHHHHHhhchhhHHHHhhc---CcEEEEEEeCCCCCCCCccchHHHHHH
Q 026511           80 KLRVDEKKIISVNNLRGIARLVICSGPA-S-YIMESFKRSEPFTESLLER---GVLVVSFTTDGNIPSFEFEESEEMKEF  154 (237)
Q Consensus        80 ~V~l~~~r~v~l~~LR~~aRvVI~AG~~-e-~V~~al~~a~~~~~~L~~r---~VlVVPv~~~g~~~~~~f~~~~~~~~~  154 (237)
                      .+.-.++ .+++.++++..-+|....+- . .+...+...+.+.+++.+.   ++-||-|..+.+.     +..+...++
T Consensus        20 ~l~~~~g-~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~-----d~~~~~~~~   93 (172)
T 2k6v_A           20 ALEGPQG-PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPER-----DPPEVADRY   93 (172)
T ss_dssp             EEECSSS-EEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTT-----CCHHHHHHH
T ss_pred             EEEcCCC-CCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCC-----CCHHHHHHH
Confidence            3333458 99999999875554443332 3 3666777777777777765   7999988875421     112334444


Q ss_pred             hhhhccceEEeecccchHHHHHHHHHHHcCCC--------------CCCCeEEEEeeCCeeecccCCCC--cHHHHhhcC
Q 026511          155 TRKRKRLWQLTPVYVSEWSKWLDEQKRTAGIS--------------PESPVYLSLRLDGRVRGSGVGYP--PWNAFVAQL  218 (237)
Q Consensus       155 ~~~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~--------------~~~gvyi~lr~dGrVr~SG~G~P--pW~~~v~eL  218 (237)
                      ...-...|....-. ++   -+.+-.+.-|+.              ..-+.++.+. ||+|+.+-.|..  +-.++.+.|
T Consensus        94 ~~~~~~~~~~l~d~-~~---~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~g~~~~~~~~l~~~l  168 (172)
T 2k6v_A           94 AKAFHPSFLGLSGS-PE---AVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLYSPDKAEATDRVVADL  168 (172)
T ss_dssp             HHHHCTTEEEECCC-HH---HHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEECHHHHTCHHHHHHHH
T ss_pred             HHHhCCCcEEEeCC-HH---HHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEECCCCCCCHHHHHHHH
Confidence            44444455433211 11   111111122431              1136788899 999999988876  566666544

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=88.15  E-value=2.3  Score=32.16  Aligned_cols=127  Identities=13%  Similarity=0.122  Sum_probs=75.5

Q ss_pred             cCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhhccce
Q 026511           84 DEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLW  162 (237)
Q Consensus        84 ~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~~~~  162 (237)
                      .+++.+++.++++..-+|....+ =.++...+...+.+.+++...++-||.|..+......   ..+...++..  +..|
T Consensus        26 ~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~---~~~~~~~~~~--~~~~  100 (164)
T 2h30_A           26 ADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEK---KDGEFQKWYA--GLNY  100 (164)
T ss_dssp             TTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCC---CTTHHHHHHT--TSCC
T ss_pred             CCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCcccc---CHHHHHHHHH--hCCC
Confidence            35889999999987655555433 2345556666666677777789999999885421110   1112222221  1233


Q ss_pred             EEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhhcCCC
Q 026511          163 QLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPP  220 (237)
Q Consensus       163 ~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~eLp~  220 (237)
                      ...|+..+.-....    +.-|+. .-+.++.+..||+|+.+-.|..+..++.+.+..
T Consensus       101 ~~~~~~~d~~~~~~----~~~~v~-~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~  153 (164)
T 2h30_A          101 PKLPVVTDNGGTIA----QNLNIS-VYPSWALIGKDGDVQRIVKGSINEAQALALIRN  153 (164)
T ss_dssp             TTSCEEECTTCHHH----HHTTCC-SSSEEEEECTTSCEEEEEESCCCHHHHHHHHHC
T ss_pred             CcceEEEcCchHHH----HHcCCC-ccceEEEECCCCcEEEEEcCCCCHHHHHHHHHH
Confidence            32444444322111    122442 257899999999999998898888877665543

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=87.89  E-value=3.9  Score=31.21  Aligned_cols=135  Identities=13%  Similarity=0.188  Sum_probs=74.1

Q ss_pred             cceeEecCCceeehhhhcCcceEEEEecChh--HHHHHHhhchhhHHHHhhcC--cEEEEEEeCCCCCCCCccchHHHHH
Q 026511           78 NLKLRVDEKKIISVNNLRGIARLVICSGPAS--YIMESFKRSEPFTESLLERG--VLVVSFTTDGNIPSFEFEESEEMKE  153 (237)
Q Consensus        78 rL~V~l~~~r~v~l~~LR~~aRvVI~AG~~e--~V~~al~~a~~~~~~L~~r~--VlVVPv~~~g~~~~~~f~~~~~~~~  153 (237)
                      .+.+.-.+|+.+++.+|++..-++....+-=  .+...+...+.+.+++.+.+  +-||-|..+...     +..+...+
T Consensus        15 ~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~-----d~~~~~~~   89 (174)
T 1xzo_A           15 PFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPEN-----DKPKQLKK   89 (174)
T ss_dssp             CCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTT-----CCHHHHHH
T ss_pred             CcEEEcCCCCEEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCC-----CCHHHHHH
Confidence            3444444589999999999765554443321  45555666666777787776  999998885321     11223344


Q ss_pred             HhhhhccceEEeecccc----hHHHHHHHHHHH-----c---CCCCCCCeEEEEeeCCeeecccCCCCc--HHHHhhcC
Q 026511          154 FTRKRKRLWQLTPVYVS----EWSKWLDEQKRT-----A---GISPESPVYLSLRLDGRVRGSGVGYPP--WNAFVAQL  218 (237)
Q Consensus       154 ~~~~~~~~~~a~Pv~~~----~W~~wi~eq~~~-----A---gv~~~~gvyi~lr~dGrVr~SG~G~Pp--W~~~v~eL  218 (237)
                      +...-.-.|.-+|+..+    .-+.|-......     .   ++. ..+.++++..||+|+.+=.|..+  -.++.+.|
T Consensus        90 ~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~lid~~G~i~~~~~g~~~~~~~~l~~~l  167 (174)
T 1xzo_A           90 FAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVI-HQSSFYLVGPDGKVLKDYNGVENTPYDDIISDV  167 (174)
T ss_dssp             HHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCC-SCCEEEEECTTSEEEEEEESSSSCCHHHHHHHH
T ss_pred             HHHHcCCCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeee-eeeEEEEECCCCeEEEEEcCCCCCCHHHHHHHH
Confidence            43332222311133222    223333221110     0   111 14568999999999998777653  45555543

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=87.75  E-value=1.8  Score=33.59  Aligned_cols=116  Identities=14%  Similarity=0.102  Sum_probs=63.0

Q ss_pred             cCCceeehhhhcCcceEEEEec---ChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhhcc
Q 026511           84 DEKKIISVNNLRGIARLVICSG---PASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKR  160 (237)
Q Consensus        84 ~~~r~v~l~~LR~~aRvVI~AG---~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~~  160 (237)
                      .+|+.++|+++||.. +||.-.   .-..+...+...+.+.+++  .|+-||-|..+.         .+...++.....-
T Consensus        31 ~~G~~v~l~~~~gk~-vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~v~vv~Is~d~---------~~~~~~~~~~~~~   98 (165)
T 1q98_A           31 NDLADVALNDFASKR-KVLNIFPSIDTGVCATSVRKFNQQAAKL--SNTIVLCISADL---------PFAQARFCGAEGI   98 (165)
T ss_dssp             TTSCEEEGGGGTTSE-EEEEECSCSCSSCCCHHHHHHHHHHHHS--TTEEEEEEESSC---------HHHHTTCTTTTTC
T ss_pred             CCCCEEehHHhCCCe-EEEEEECCCCCCccHHHHHHHHHHHHHc--CCCEEEEEeCCC---------HHHHHHHHHHcCC
Confidence            358999999999964 333322   2334445555555555666  788888887632         1122222222122


Q ss_pred             -ceEEeecccchHHHHHHHHHH-HcCCCCC--------CCeEEEEeeCCeeecccCCC-----CcHHHHhhcC
Q 026511          161 -LWQLTPVYVSEWSKWLDEQKR-TAGISPE--------SPVYLSLRLDGRVRGSGVGY-----PPWNAFVAQL  218 (237)
Q Consensus       161 -~~~a~Pv~~~~W~~wi~eq~~-~Agv~~~--------~gvyi~lr~dGrVr~SG~G~-----PpW~~~v~eL  218 (237)
                       .|   |+-.+..    +.+.. .-|+...        .+-++++..||+|+....|.     |+..++++.|
T Consensus        99 ~~~---~~l~D~~----~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~~l~~l  164 (165)
T 1q98_A           99 ENA---KTVSTFR----NHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQLVEEIKEEPNYEAALAVL  164 (165)
T ss_dssp             TTE---EEEECTT----CTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHHTT
T ss_pred             Cce---EEeeccc----cchHHHHhCceecccccCCccceeEEEEcCCCEEEEEEeCCCCCCCCCHHHHHHhh
Confidence             23   3332321    01111 1244221        37889999999999988763     4455555543

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=87.58  E-value=2.7  Score=33.37  Aligned_cols=141  Identities=13%  Similarity=0.179  Sum_probs=77.6

Q ss_pred             cccceeEecCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHH
Q 026511           76 LSNLKLRVDEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEF  154 (237)
Q Consensus        76 L~rL~V~l~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~  154 (237)
                      +-.+.+.-.+|+.++|++++|..-+|..-++ =..+...+...+.+.+++.+.|+.||-|..+.-... +-+..+...++
T Consensus        26 ~p~f~l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~-e~~~~~~~~~~  104 (187)
T 3dwv_A           26 IFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQ-EPGNEEEIKEF  104 (187)
T ss_dssp             GGGSCCBBTTSCBCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSC-SSSBTTHHHHS
T ss_pred             cCCeEEEcCCCCEeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCC-CCCCHHHHHHH
Confidence            3334444345899999999996544443222 123555667777788889999999999988631000 01111222222


Q ss_pred             hhhh-ccceEEee-cccc-----hHHHHHHHHHHH-cCCCCCCC---eEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026511          155 TRKR-KRLWQLTP-VYVS-----EWSKWLDEQKRT-AGISPESP---VYLSLRLDGRVRGSGVGYPPWNAFVAQL  218 (237)
Q Consensus       155 ~~~~-~~~~~a~P-v~~~-----~W~~wi~eq~~~-Agv~~~~g---vyi~lr~dGrVr~SG~G~PpW~~~v~eL  218 (237)
                      .... .-.|-..- ++.+     .--.|+.++... -|+ +.-+   -++.+.+||+|+.+-.|..+..++.+.|
T Consensus       105 ~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~-~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l~~~i  178 (187)
T 3dwv_A          105 VCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILAT-KAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKL  178 (187)
T ss_dssp             CCBCCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSS-SSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHH
T ss_pred             HHhccCCCCceeeccccCCcchhHHHHHHHhhcCCccCC-CccccceeEEEECCCCCEEEEECCCCCHHHHHHHH
Confidence            2211 11221110 0111     112344443211 122 1234   7889999999999999998888877665

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=87.48  E-value=7.7  Score=29.28  Aligned_cols=139  Identities=12%  Similarity=0.178  Sum_probs=77.8

Q ss_pred             ccceeEecCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHh
Q 026511           77 SNLKLRVDEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFT  155 (237)
Q Consensus        77 ~rL~V~l~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~  155 (237)
                      -.+.+.-.+|+.+++.++++..-+|....+ =..+...+...+.+.+++.+.++.||-|..+.-... +-+..+...++.
T Consensus        13 p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~-~~~~~~~~~~~~   91 (170)
T 2p5q_A           13 HDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEE-EPGTNDQITDFV   91 (170)
T ss_dssp             GGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTC-CCSCHHHHHHHH
T ss_pred             cceEEEcCCCCEecHHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCC-CCCCHHHHHHHH
Confidence            334444456899999999986544443332 236667777778888889989999999988531000 111122333333


Q ss_pred             h-hhccceEEee-cccc-----hHHHHHHHHHHHcCC----CCCCCeEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026511          156 R-KRKRLWQLTP-VYVS-----EWSKWLDEQKRTAGI----SPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQL  218 (237)
Q Consensus       156 ~-~~~~~~~a~P-v~~~-----~W~~wi~eq~~~Agv----~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~eL  218 (237)
                      . .-...|...- .+.+     ..-+|+.++.-  |+    -|..+.++.+.+||+|+.+-.|..+..++.+.|
T Consensus        92 ~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~--~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i  163 (170)
T 2p5q_A           92 CTRFKSEFPIFDKIDVNGENASPLYRFLKLGKW--GIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDI  163 (170)
T ss_dssp             HHHTCCCSCBBCCCBSSSTTBCHHHHHHHTHHH--HTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHH
T ss_pred             HHhcCCCceeEeeeccCCCchHHHHHHHHhcCC--CccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHHH
Confidence            3 1122221110 1111     12233332211  22    122337899999999999988887776665543

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=87.42  E-value=6.1  Score=29.31  Aligned_cols=113  Identities=13%  Similarity=0.101  Sum_probs=63.0

Q ss_pred             ceeehhhhcCcceEEEEecCh-hHHHHHHhhchhhHHHHhhc-CcEEEEEEeCCCCCCCCccchHHHHHHhhhhccceEE
Q 026511           87 KIISVNNLRGIARLVICSGPA-SYIMESFKRSEPFTESLLER-GVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQL  164 (237)
Q Consensus        87 r~v~l~~LR~~aRvVI~AG~~-e~V~~al~~a~~~~~~L~~r-~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~~~~~a  164 (237)
                      +.+++.++++..-+|....+- .++...    .+.-++|.+. ++.++.|..+.+        .+...++.....-.|..
T Consensus        33 ~~~~l~~~~gk~~ll~f~~~~C~~C~~~----~~~l~~l~~~~~v~~v~v~~~~~--------~~~~~~~~~~~~~~~~~  100 (156)
T 1kng_A           33 PGLDPAAFKGKVSLVNVWASWCVPCHDE----APLLTELGKDKRFQLVGINYKDA--------ADNARRFLGRYGNPFGR  100 (156)
T ss_dssp             CCBCGGGGTTSCEEEEEECTTCHHHHHH----HHHHHHHTTCTTSEEEEEEESCC--------HHHHHHHHHHHCCCCSE
T ss_pred             ceechHHhCCCEEEEEEEcccCHhHHHH----HHHHHHHHhcCCeEEEEEECCCC--------HHHHHHHHHHcCCCCce
Confidence            899999999866555544432 233332    3333334333 499999887532        12233333332222221


Q ss_pred             eecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026511          165 TPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQL  218 (237)
Q Consensus       165 ~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~eL  218 (237)
                        +..+.-.. +   .+.-|+. .-+.++.+..||+|+.+-.|..+...+.+.+
T Consensus       101 --~~~d~~~~-~---~~~~~v~-~~P~~~~id~~G~i~~~~~g~~~~~~l~~~l  147 (156)
T 1kng_A          101 --VGVDANGR-A---SIEWGVY-GVPETFVVGREGTIVYKLVGPITPDNLRSVL  147 (156)
T ss_dssp             --EEEETTSH-H---HHHTTCC-SSCEEEEECTTSBEEEEEESCCCHHHHHHTH
T ss_pred             --eeeCchhH-H---HHhcCcC-ccCeEEEEcCCCCEEEEEeCCCCHHHHHHHH
Confidence              11121111 1   1122543 2577889999999999999998888776654

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=87.27  E-value=6.4  Score=28.13  Aligned_cols=122  Identities=13%  Similarity=0.102  Sum_probs=70.5

Q ss_pred             cceeEecCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhh
Q 026511           78 NLKLRVDEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTR  156 (237)
Q Consensus        78 rL~V~l~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~  156 (237)
                      .+.+.--+++.+++.++++..-++....+ =.++...+...+.+.+++.  ++-++-|..+.+        .+...++..
T Consensus         7 ~~~~~~~~g~~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~--------~~~~~~~~~   76 (136)
T 1zzo_A            7 QFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP--EVTFVGVAGLDQ--------VPAMQEFVN   76 (136)
T ss_dssp             CCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSC--------HHHHHHHHH
T ss_pred             CcccccCCCCEeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC--CeEEEEEeCCCC--------HHHHHHHHH
Confidence            34444446899999999886655554443 3455555555556666554  898888887532        122223222


Q ss_pred             hhcc-ceEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026511          157 KRKR-LWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQL  218 (237)
Q Consensus       157 ~~~~-~~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~eL  218 (237)
                      ...- .|   |+..+.....    .+.-|+. .-+.++.+..||+|. +-.|..+...+.+.|
T Consensus        77 ~~~~~~~---~~~~d~~~~~----~~~~~i~-~~P~~~~id~~g~i~-~~~g~~~~~~l~~~l  130 (136)
T 1zzo_A           77 KYPVKTF---TQLADTDGSV----WANFGVT-QQPAYAFVDPHGNVD-VVRGRMSQDELTRRV  130 (136)
T ss_dssp             HTTCTTS---EEEECTTCHH----HHHTTCC-SSSEEEEECTTCCEE-EEESCCCHHHHHHHH
T ss_pred             HcCCCce---EEEEcCCcHH----HHHcCCC-CCceEEEECCCCCEE-EEecCCCHHHHHHHH
Confidence            2111 22   2222221111    1122442 257899999999999 888888877766543

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=87.27  E-value=7.4  Score=28.95  Aligned_cols=129  Identities=14%  Similarity=0.198  Sum_probs=77.2

Q ss_pred             hhhcccceeEecCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHH
Q 026511           73 EESLSNLKLRVDEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEM  151 (237)
Q Consensus        73 ee~L~rL~V~l~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~  151 (237)
                      +..+-.+.+.-.+++.+++.+++ ..-+|...++ =.++...+...+.+.+++   ++-++-|..+..      +..+..
T Consensus         8 g~~~p~f~l~~~~g~~~~l~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~---~v~~v~v~~d~~------~~~~~~   77 (154)
T 3ia1_A            8 GEPLPDFLLLDPKGQPVTPATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET---GVPFYVISREPR------DTREVV   77 (154)
T ss_dssp             BEECCCCCEECTTSCEECTTTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH---CCCEEEEECCTT------CCHHHH
T ss_pred             CCcCCceEEECCCCCEechHHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc---CCeEEEEeCCCc------ccHHHH
Confidence            34444555555578999999999 4444444433 346666666777777777   788888877521      122333


Q ss_pred             HHHhhhhccceEEeecccc--hHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026511          152 KEFTRKRKRLWQLTPVYVS--EWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQL  218 (237)
Q Consensus       152 ~~~~~~~~~~~~a~Pv~~~--~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~eL  218 (237)
                      .++......   -.|+..+  +...-+   .+.-|+. .-+.++.+.+||+|+.+-.|..+.+++.+.|
T Consensus        78 ~~~~~~~~~---~~~~~~d~~~~~~~~---~~~~~v~-~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  139 (154)
T 3ia1_A           78 LEYMKTYPR---FIPLLASDRDRPHEV---AARFKVL-GQPWTFVVDREGKVVALFAGRAGREALLDAL  139 (154)
T ss_dssp             HHHHTTCTT---EEECBCCSSCCHHHH---HTTSSBC-SSCEEEEECTTSEEEEEEESBCCHHHHHHHH
T ss_pred             HHHHHHcCC---CcccccccccchHHH---HHHhCCC-cccEEEEECCCCCEEEEEcCCCCHHHHHHHH
Confidence            343333323   3344333  111111   1112443 2578999999999999999998887776655

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=87.26  E-value=3.4  Score=33.84  Aligned_cols=126  Identities=11%  Similarity=0.135  Sum_probs=71.6

Q ss_pred             hhhhcccceeEecCCceeehhhhcCcc-eEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchH
Q 026511           72 REESLSNLKLRVDEKKIISVNNLRGIA-RLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESE  149 (237)
Q Consensus        72 Ree~L~rL~V~l~~~r~v~l~~LR~~a-RvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~  149 (237)
                      -.+.+-.+.+.-.+|+.+++.++++.. -+|....+ =..+...+...+.+.+++.+.|+.||-|..+..... +-+..+
T Consensus        34 ~G~~aP~f~l~~~~G~~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~-~~d~~~  112 (218)
T 3u5r_E           34 LGTRAADFVLPDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAF-PEETLE  112 (218)
T ss_dssp             TTCBCCCCCEECTTCCEECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTC-GGGSHH
T ss_pred             CCCcCCCcEeECCCCCEEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccc-ccCCHH
Confidence            344444555555568999999999984 33333222 235566677778888889999999999988532110 112223


Q ss_pred             HHHHHhhhhccceEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccC
Q 026511          150 EMKEFTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGV  206 (237)
Q Consensus       150 ~~~~~~~~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~  206 (237)
                      ...++.....-.|   |+..+.= .-+.   +.-|+.. .+-++++..||+|+.+|.
T Consensus       113 ~~~~~~~~~~~~~---~~l~D~~-~~~~---~~~~v~~-~P~~~liD~~G~i~~~g~  161 (218)
T 3u5r_E          113 RVGAEVKAYGYGF---PYLKDAS-QSVA---KAYGAAC-TPDFFLYDRERRLVYHGQ  161 (218)
T ss_dssp             HHHHHHHHHTCCS---CEEECTT-CHHH---HHHTCCE-ESEEEEECTTCBEEEEEC
T ss_pred             HHHHHHHHhCCCc---cEEECCc-cHHH---HHcCCCC-CCeEEEECCCCcEEEecc
Confidence            3334333322222   2222210 0011   1125422 478899999999998764

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=86.68  E-value=4.9  Score=31.16  Aligned_cols=106  Identities=12%  Similarity=0.168  Sum_probs=62.3

Q ss_pred             CC--ceeehhh-hcCcceEEEEecCh---hHHH-HHHhhchhhHHHHhhcCcE-EEEEEeCCCCCCCCccchHHHHHHhh
Q 026511           85 EK--KIISVNN-LRGIARLVICSGPA---SYIM-ESFKRSEPFTESLLERGVL-VVSFTTDGNIPSFEFEESEEMKEFTR  156 (237)
Q Consensus        85 ~~--r~v~l~~-LR~~aRvVI~AG~~---e~V~-~al~~a~~~~~~L~~r~Vl-VVPv~~~g~~~~~~f~~~~~~~~~~~  156 (237)
                      +|  +.++|++ +++.. +||.--++   ..+. .-+..-+.+.+++.+.||- ||-|..+.         .+...++..
T Consensus        21 ~G~~~~~~l~~~~~gk~-vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~---------~~~~~~~~~   90 (162)
T 1tp9_A           21 QDQLQEVSVHSLVAGKK-VILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVND---------PFVMKAWAK   90 (162)
T ss_dssp             TSCEEEEESHHHHTTSE-EEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSC---------HHHHHHHHH
T ss_pred             CCCceeEeHHHHhCCCc-EEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC---------HHHHHHHHH
Confidence            47  8999999 88864 44433332   4555 5566667777888889999 99887741         123333333


Q ss_pred             hhcc--ceEEeecccchHHHHHHHHHH-HcCCCC-----C-----CCeEEEEeeCCeeecccCCCC
Q 026511          157 KRKR--LWQLTPVYVSEWSKWLDEQKR-TAGISP-----E-----SPVYLSLRLDGRVRGSGVGYP  209 (237)
Q Consensus       157 ~~~~--~~~a~Pv~~~~W~~wi~eq~~-~Agv~~-----~-----~gvyi~lr~dGrVr~SG~G~P  209 (237)
                      +-.-  .|   |+-.|.     +.+.. .-|+..     +     .+..+++. ||+|+...+|-|
T Consensus        91 ~~~~~~~~---~~l~D~-----~~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~~~~~~  147 (162)
T 1tp9_A           91 SYPENKHV---KFLADG-----SATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAANIEGG  147 (162)
T ss_dssp             TCTTCSSE---EEEECT-----TSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEEECSS
T ss_pred             hcCCCCCe---EEEECC-----CchHHHHcCcccccccCCCCccceeEEEEEE-CCEEEEEEeeCC
Confidence            3222  23   443231     11122 225531     1     34556669 999999988863

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=85.74  E-value=3.6  Score=37.31  Aligned_cols=121  Identities=15%  Similarity=0.119  Sum_probs=72.2

Q ss_pred             cCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCcc-chHHHHHHhhhhccc
Q 026511           84 DEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFE-ESEEMKEFTRKRKRL  161 (237)
Q Consensus        84 ~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~-~~~~~~~~~~~~~~~  161 (237)
                      .+++.+++.++++..-+|....+ =..+...+...+.+.+++.+.++.||-|..+..    .+. ..+...++...-...
T Consensus        70 ~dG~~vsLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~----~~~d~~~~~~~~~~~~~l~  145 (352)
T 2hyx_A           70 PGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEY----AFEKVPGNVAKGAANLGIS  145 (352)
T ss_dssp             GGGCCCCGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSS----GGGGCHHHHHHHHHHHTCC
T ss_pred             CCCCEEcHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcc----cccCCHHHHHHHHHHcCCC
Confidence            35789999999986544444332 345666666777788888888999999987431    111 122333333332222


Q ss_pred             eEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhh
Q 026511          162 WQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVA  216 (237)
Q Consensus       162 ~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~  216 (237)
                      |   |+..+.=.    +-.+.-|+. .-+.++.+.+||+|+.+-.|..++.++.+
T Consensus       146 f---pv~~D~~~----~l~~~ygV~-~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~  192 (352)
T 2hyx_A          146 Y---PIALDNNY----ATWTNYRNR-YWPAEYLIDATGTVRHIKFGEGDYNVTET  192 (352)
T ss_dssp             S---CEEECTTS----HHHHHTTCC-EESEEEEECTTSBEEEEEESBCCHHHHHH
T ss_pred             c---cEEeCCcH----HHHHHcCCC-ccCEEEEEeCCCeEEEEEcCCCCHHHHHH
Confidence            2   33222100    011112432 14788899999999999999888776544

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=84.58  E-value=3.6  Score=33.89  Aligned_cols=118  Identities=7%  Similarity=0.035  Sum_probs=68.4

Q ss_pred             CC--ceeehhhh-cCcceEEEEecC---hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhh
Q 026511           85 EK--KIISVNNL-RGIARLVICSGP---ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKR  158 (237)
Q Consensus        85 ~~--r~v~l~~L-R~~aRvVI~AG~---~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~  158 (237)
                      +|  +.++|.++ ++.. +||.--+   -..+...+...+.+.+++.+.|+-||-|..+.         .+...++...-
T Consensus        38 ~G~~~~v~l~d~~~gk~-vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~---------~~~~~~~~~~~  107 (213)
T 2i81_A           38 DNSFGEVNLTQFIGKKY-VLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDS---------KYTHLAWKKTP  107 (213)
T ss_dssp             TSCEEEEEGGGGTTTCE-EEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSC---------HHHHHHHHSSC
T ss_pred             CCceeEEeHHHHcCCCe-EEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC---------HHHHHHHHHHH
Confidence            57  89999999 8864 3443332   33566677777778888888999999998742         11222222211


Q ss_pred             ccc----eEEeecccchHHHHHHHHHH-HcCCCC----CCCeEEEEeeCCeeecccCCCCc----HHHHhhc
Q 026511          159 KRL----WQLTPVYVSEWSKWLDEQKR-TAGISP----ESPVYLSLRLDGRVRGSGVGYPP----WNAFVAQ  217 (237)
Q Consensus       159 ~~~----~~a~Pv~~~~W~~wi~eq~~-~Agv~~----~~gvyi~lr~dGrVr~SG~G~Pp----W~~~v~e  217 (237)
                      .+.    -.-.|+-.+.     ..++. .-|+..    ..+.++++..||+|+.+..|..+    -.+++..
T Consensus       108 ~~~~g~~~~~fp~l~D~-----~~~~~~~ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~  174 (213)
T 2i81_A          108 LAKGGIGNIKHTLLSDI-----TKSISKDYNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRI  174 (213)
T ss_dssp             GGGTCCCSCSSEEEECT-----TSHHHHHTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHH
T ss_pred             HhhCCccCCCceEEECC-----chHHHHHhCCccccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHH
Confidence            000    1123443332     11121 225431    14568899999999999877532    4555543

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=84.05  E-value=7  Score=31.12  Aligned_cols=117  Identities=12%  Similarity=0.061  Sum_probs=69.8

Q ss_pred             CC--ceeehhhhcCcceEEEE-ecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhh--
Q 026511           85 EK--KIISVNNLRGIARLVIC-SGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKR--  158 (237)
Q Consensus        85 ~~--r~v~l~~LR~~aRvVI~-AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~--  158 (237)
                      +|  +.++|++|||..-++.. +++ -..+..-+...+.+.+++.+.|+-||-|..+.         .+...++...-  
T Consensus        17 ~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~---------~~~~~~~~~~~~~   87 (186)
T 1n8j_A           17 NGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDT---------HFTHKAWHSSSET   87 (186)
T ss_dssp             TTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSC---------HHHHHHHHHHCTT
T ss_pred             CCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCC---------HHHHHHHHHHcCc
Confidence            46  89999999985333332 222 23677777777888888989999999887742         12233333322  


Q ss_pred             --ccceEEeecccchHHHHHHHHH-HHcCCCC-----CCCeEEEEeeCCeeecccCCCC----cHHHHhhcC
Q 026511          159 --KRLWQLTPVYVSEWSKWLDEQK-RTAGISP-----ESPVYLSLRLDGRVRGSGVGYP----PWNAFVAQL  218 (237)
Q Consensus       159 --~~~~~a~Pv~~~~W~~wi~eq~-~~Agv~~-----~~gvyi~lr~dGrVr~SG~G~P----pW~~~v~eL  218 (237)
                        .-.|   |+..+.     +.++ +.-|+..     ..+.++++..||+|+..-.|..    +..++++.|
T Consensus        88 ~~~~~f---p~l~D~-----~~~~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l  151 (186)
T 1n8j_A           88 IAKIKY---AMIGDP-----TGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKI  151 (186)
T ss_dssp             GGGCCS---EEEECT-----TSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHH
T ss_pred             ccCCce---eEEECC-----chHHHHHhCCccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHH
Confidence              2222   443231     1111 1225432     1467889999999999877642    456665544

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=83.66  E-value=1.2  Score=35.04  Aligned_cols=127  Identities=17%  Similarity=0.160  Sum_probs=65.8

Q ss_pred             ceeEecCCceeehhhhcCcceEEEEe-cC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhh
Q 026511           79 LKLRVDEKKIISVNNLRGIARLVICS-GP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTR  156 (237)
Q Consensus        79 L~V~l~~~r~v~l~~LR~~aRvVI~A-G~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~  156 (237)
                      ..+.-.+++.+++.++++..-++... .. -..+...+...+.+.++   .++-||.|..+..         +...++..
T Consensus        27 f~l~~~~G~~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~---~~v~vv~Is~D~~---------~~~~~~~~   94 (175)
T 1xvq_A           27 FTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA---SGATVLCVSKDLP---------FAQKRFCG   94 (175)
T ss_dssp             CEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---TTCEEEEEESSCH---------HHHTTCC-
T ss_pred             eEEECCCCCEEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh---cCCEEEEEECCCH---------HHHHHHHH
Confidence            33333458999999999865444433 22 34455555555444444   7888888887421         11111111


Q ss_pred             hhccceEEeecccchHHHHHHHHHHHcCCCCC--------CCeEEEEeeCCeeecccCCC-----CcHHHHhhcCCCCcc
Q 026511          157 KRKRLWQLTPVYVSEWSKWLDEQKRTAGISPE--------SPVYLSLRLDGRVRGSGVGY-----PPWNAFVAQLPPVKG  223 (237)
Q Consensus       157 ~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~~--------~gvyi~lr~dGrVr~SG~G~-----PpW~~~v~eLp~~~g  223 (237)
                      ...-  .-.|+..+.-.    +-.+.-|+...        .+.++++.+||+|+.+-.|.     |...++++.+-...|
T Consensus        95 ~~~~--~~~~~l~D~~~----~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~l~~~~~  168 (175)
T 1xvq_A           95 AEGT--ENVMPASAFRD----SFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGATSG  168 (175)
T ss_dssp             -------CEEEEECTTS----SHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHHHTC-
T ss_pred             HcCC--CCceEeeCCHH----HHHHHhCCcccccccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHHHHhhcC
Confidence            1111  11233333211    11112244222        26789999999999987642     346777766554443

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=82.53  E-value=15  Score=28.97  Aligned_cols=53  Identities=11%  Similarity=0.207  Sum_probs=37.7

Q ss_pred             cCCceeehhhh-cCcceEEEE-e-cC-hhHHHH-HHhhchhhHHHHhhcCc-EEEEEEeC
Q 026511           84 DEKKIISVNNL-RGIARLVIC-S-GP-ASYIME-SFKRSEPFTESLLERGV-LVVSFTTD  137 (237)
Q Consensus        84 ~~~r~v~l~~L-R~~aRvVI~-A-G~-~e~V~~-al~~a~~~~~~L~~r~V-lVVPv~~~  137 (237)
                      .+++.++|+++ ++.. +||. . ++ -..+.. -+..-+.+.+++.+.|+ -||-|..+
T Consensus        18 ~~G~~v~L~d~~~Gk~-vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d   76 (167)
T 2wfc_A           18 TPNDKVNMAELFAGKK-GVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVN   76 (167)
T ss_dssp             STTCEEEHHHHTTTSE-EEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESS
T ss_pred             CCCcEEeHHHHhCCCc-EEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            34799999999 8854 3333 2 33 345665 56666777788899999 99998874

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=82.47  E-value=13  Score=30.59  Aligned_cols=134  Identities=12%  Similarity=0.069  Sum_probs=73.3

Q ss_pred             cccceeEecC-CceeehhhhcCcceEEEE----ecChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHH
Q 026511           76 LSNLKLRVDE-KKIISVNNLRGIARLVIC----SGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEE  150 (237)
Q Consensus        76 L~rL~V~l~~-~r~v~l~~LR~~aRvVI~----AG~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~  150 (237)
                      +-.+.+.-.+ |+.++|++|||..-+|..    +|+   + .-+...+.+.+++.+.|+.||-|..+.-. ..+.+..++
T Consensus        17 ~pdF~l~d~~~G~~v~Ls~~kGKvvll~F~At~C~~---c-~e~p~L~~l~~~~~~~g~~vlgvs~d~f~-~~e~~~~~~   91 (207)
T 2r37_A           17 IYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGL---T-GQYIELNALQEELAPFGLVILGFPCNQFG-KQEPGENSE   91 (207)
T ss_dssp             GGGCEEEBTTSSCEEEGGGGTTSEEEEEEECSSSTT---T-THHHHHHHHHHHHGGGTEEEEEEECCCBT-TCCCSCHHH
T ss_pred             cCCeEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCC---h-HHHHHHHHHHHHhccCCEEEEEEECcccC-cCCCCCHHH
Confidence            3444555556 899999999996433332    333   2 23455667788888899999998864210 001122234


Q ss_pred             HHHHhh------hhccceEEeeccc----------chHHHHHHHHHH-HcCC---------CCC-------CCeEEEEee
Q 026511          151 MKEFTR------KRKRLWQLTPVYV----------SEWSKWLDEQKR-TAGI---------SPE-------SPVYLSLRL  197 (237)
Q Consensus       151 ~~~~~~------~~~~~~~a~Pv~~----------~~W~~wi~eq~~-~Agv---------~~~-------~gvyi~lr~  197 (237)
                      ..++..      +-.-.   .|+..          ..|.- +.+... ..++         .|.       ..-.+.+.+
T Consensus        92 i~~f~~~~~~~~~~~~~---fp~l~d~d~~g~~~~~~~~~-l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~  167 (207)
T 2r37_A           92 ILPTLKYVRPGGGFVPN---FQLFEKGDVNGEKEQKFYTF-LKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGP  167 (207)
T ss_dssp             HHHHHHHTSSCTTCCCS---SEEBCCCCSSSTTCCHHHHH-HHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECT
T ss_pred             HHHHHHhcchhhccCcc---ceeeeEeccCCcccchHHHH-HHhhCccccccccccccccccccccCcccccceEEEECC
Confidence            444443      21122   33321          12433 333221 0011         010       135788999


Q ss_pred             CCeeecccCCCCcHHHHhhcC
Q 026511          198 DGRVRGSGVGYPPWNAFVAQL  218 (237)
Q Consensus       198 dGrVr~SG~G~PpW~~~v~eL  218 (237)
                      ||+|+.+-.|.-++..+.+++
T Consensus       168 ~G~i~~~~~g~~~~~~l~~~I  188 (207)
T 2r37_A          168 DGIPIMRWHHRTTVSNVKMDI  188 (207)
T ss_dssp             TSCEEEEECTTSCHHHHHHHH
T ss_pred             CCcEEEEECCCCCHHHHHHHH
Confidence            999999888776777776554

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=82.45  E-value=17  Score=30.29  Aligned_cols=140  Identities=11%  Similarity=0.090  Sum_probs=74.2

Q ss_pred             cccceeEecC-CceeehhhhcCcceEEEE-ecChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHH
Q 026511           76 LSNLKLRVDE-KKIISVNNLRGIARLVIC-SGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKE  153 (237)
Q Consensus        76 L~rL~V~l~~-~r~v~l~~LR~~aRvVI~-AG~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~  153 (237)
                      +-.+.+.-.+ |+.++|++|||..-+|.. |-.-..+. -+...+.+.+++.+.|+.||-|..+.-. ..+.+..++..+
T Consensus        35 ~pdF~l~d~~~G~~v~Lsd~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d~f~-~~e~~~~~~i~~  112 (215)
T 2i3y_A           35 IYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQFG-KQEPGDNKEILP  112 (215)
T ss_dssp             GGGCEEEBSSSSCEEEGGGGTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECCCST-TCCCSCHHHHHH
T ss_pred             cCCcEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEccccC-cCCCCCHHHHHH
Confidence            4445555556 899999999997433332 11112233 3555667788888899999998864210 001122234444


Q ss_pred             Hhhh--hccceE-Eeeccc----c------hHHHHHHHHHHH-c---CC------CCC-------CCeEEEEeeCCeeec
Q 026511          154 FTRK--RKRLWQ-LTPVYV----S------EWSKWLDEQKRT-A---GI------SPE-------SPVYLSLRLDGRVRG  203 (237)
Q Consensus       154 ~~~~--~~~~~~-a~Pv~~----~------~W~~wi~eq~~~-A---gv------~~~-------~gvyi~lr~dGrVr~  203 (237)
                      +...  ...++. -.|+..    +      .|. |+.++... .   |.      .|.       ..-.+.|.+||+|+.
T Consensus       113 f~~~~~~~~~~~~~fpll~d~d~~g~~~~~~~~-~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~G~vv~  191 (215)
T 2i3y_A          113 GLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFS-FLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVM  191 (215)
T ss_dssp             HHHHTSSCTTCCCSSEEBCCCCSSSTTCCHHHH-HHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTTSCEEE
T ss_pred             HHHhccchhccCccceeEeeeccCCcccchHHH-HHHhhCcccccccccccccccccccccccccCceEEEECCCCeEEE
Confidence            4430  000111 234321    1      243 33333210 0   11      010       134688999999999


Q ss_pred             ccCCCCcHHHHhhcC
Q 026511          204 SGVGYPPWNAFVAQL  218 (237)
Q Consensus       204 SG~G~PpW~~~v~eL  218 (237)
                      +-.|.-++.++.+++
T Consensus       192 ~~~g~~~~~~l~~~I  206 (215)
T 2i3y_A          192 RWSHRATVSSVKTDI  206 (215)
T ss_dssp             EECTTSCHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHH
Confidence            988776777776554

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=82.28  E-value=1.8  Score=36.73  Aligned_cols=109  Identities=12%  Similarity=0.037  Sum_probs=64.3

Q ss_pred             CceeehhhhcCcceEEEEecC---hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhhccc-
Q 026511           86 KKIISVNNLRGIARLVICSGP---ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRL-  161 (237)
Q Consensus        86 ~r~v~l~~LR~~aRvVI~AG~---~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~~~-  161 (237)
                      ++.++|++|+|.. +||.-.+   -..+...+.....+.+++.++||-||-|..+.         .+...++...-.+. 
T Consensus        67 G~~vsLsd~~Gk~-vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~---------~~~~~~~~~~~~~~~  136 (240)
T 3qpm_A           67 FKELKLSDYRGKY-LVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDS---------QFTHLAWIITPRKQG  136 (240)
T ss_dssp             EEEEEGGGGTTSE-EEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSC---------HHHHHHHHHSCGGGT
T ss_pred             CcEEEHHHhCCCE-EEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCC---------HHHHHHHHHHHHhhc
Confidence            6799999999963 3333333   45677778888888899999999999888742         11222222211000 


Q ss_pred             ---eEEeecccchHHHHHHHHHHHcCCCC-----CCCeEEEEeeCCeeecccCCC
Q 026511          162 ---WQLTPVYVSEWSKWLDEQKRTAGISP-----ESPVYLSLRLDGRVRGSGVGY  208 (237)
Q Consensus       162 ---~~a~Pv~~~~W~~wi~eq~~~Agv~~-----~~gvyi~lr~dGrVr~SG~G~  208 (237)
                         -.-.|+-.|.-.    +-.+.-|+..     ..+-+++|..||+|+.+..|.
T Consensus       137 ~~~~~~fp~l~D~~~----~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~  187 (240)
T 3qpm_A          137 GLGPMKIPLLSDLTH----QISKDYGVYLEDQGHTLRGLFIIDEKGVLRQITMND  187 (240)
T ss_dssp             CCCSCSSCEEECTTS----HHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEEC
T ss_pred             CCCCCceeEEeCchH----HHHHHhCCccccCCCccceEEEEcCCCeEEEEEecC
Confidence               122344333211    1112225431     135688999999999987663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	237
d1fg7a_	354	c.67.1.1 (A:) Histidinol-phosphate aminotransferas	0.004

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} Length = 354

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 96  GIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSF---EFEESEEMK 152
                V  S   +YI+  FK S    +SL ++G+++       ++           EE +
Sbjct: 285 PCVEQVFDSE-TNYILARFKASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVGTREESQ 343

Query: 153 EF 154
             
Sbjct: 344 RV 345

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	237
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	94.41
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	93.94
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	93.6
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	93.48
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	88.12
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	82.96
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	82.26
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	80.78

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=94.41  E-value=0.57  Score=33.80  Aligned_cols=118  Identities=15%  Similarity=0.137  Sum_probs=74.7

Q ss_pred             eeEecCCceeehhhhcCcceEEEEecCh-hHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhh
Q 026511           80 KLRVDEKKIISVNNLRGIARLVICSGPA-SYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKR  158 (237)
Q Consensus        80 ~V~l~~~r~v~l~~LR~~aRvVI~AG~~-e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~  158 (237)
                      .+.-.+|..+++.++++..-++....+- .++.+.+...+.+.+.+.+.++.+|.+..+.+        .++..++..+-
T Consensus         9 ~l~~~~G~~~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~--------~~~~~~~~~~~   80 (137)
T d1st9a_           9 VLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGES--------KIAVHNFMKSY   80 (137)
T ss_dssp             EEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCC--------HHHHHHHHHHT
T ss_pred             EEECCCcCEEeHHHhCCCEEEEEEeeccccceeecccccccccccccccccccccccccch--------hhhHHHHHHHc
Confidence            3444468999999999987555555443 57888888889999999999999999887421        12233333222


Q ss_pred             ccceEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHH
Q 026511          159 KRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNA  213 (237)
Q Consensus       159 ~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~  213 (237)
                      .-.   .|+..+.-.+.    .+.-|+. .-+.++.+..||+|+.+=.|...-+.
T Consensus        81 ~~~---~~~~~d~~~~~----~~~~~v~-~~P~~~liD~~G~i~~~~~G~~~~~~  127 (137)
T d1st9a_          81 GVN---FPVVLDTDRQV----LDAYDVS-PLPTTFLINPEGKVVKVVTGTMTESM  127 (137)
T ss_dssp             TCC---SCEEEETTSHH----HHHTTCC-SSCEEEEECTTSEEEEEEESCCCHHH
T ss_pred             CCC---ccccccccchh----hhhhhcc-ccceEEEECCCCEEEEEEECCCCHHH
Confidence            222   23322222111    1122442 24788999999999999777665433

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=93.94  E-value=0.089  Score=38.56  Aligned_cols=128  Identities=12%  Similarity=0.155  Sum_probs=82.6

Q ss_pred             EecCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhhcc
Q 026511           82 RVDEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKR  160 (237)
Q Consensus        82 ~l~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~~  160 (237)
                      .-.+++.++|.++++..-++..-++ =.++.+.+...+.+.+++...++.++.|..+.......  .. +..+.  ..+.
T Consensus         9 ~~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~--~~-~~~~~--~~~~   83 (143)
T d2fy6a1           9 KTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKK--DG-DFQKW--YAGL   83 (143)
T ss_dssp             EETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCC--TT-HHHHH--HTTS
T ss_pred             ECCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccc--hh-hhhhh--hhhc
Confidence            3456899999999997655555443 24667677777888888999999999998755433211  11 11111  1224


Q ss_pred             ceEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhhcCC
Q 026511          161 LWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLP  219 (237)
Q Consensus       161 ~~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~eLp  219 (237)
                      .+...|+..+...+ +..   .-|+.. -+-|+++.+||+|+.+=.|..+-.++.+-|.
T Consensus        84 ~~~~~~~~~D~~~~-~~~---~~~v~~-~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~  137 (143)
T d2fy6a1          84 NYPKLPVVTDNGGT-IAQ---SLNISV-YPSWALIGKDGDVQRIVKGSINEAQALALIR  137 (143)
T ss_dssp             CCTTSCEEECTTCH-HHH---HTTCCS-SSEEEEECTTSCEEEEEESCCCHHHHHHHHH
T ss_pred             CCcccccccccchH-HHH---HcCCCc-cCEEEEECCCCEEEEEEECCCCHHHHHHHHH
Confidence            44556666555432 111   125432 5899999999999998888888777765543

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.60  E-value=0.22  Score=37.93  Aligned_cols=131  Identities=16%  Similarity=0.240  Sum_probs=72.7

Q ss_pred             cCCceeehhhhcCcceEEEEecC--hhHHHHHHhhchhhHHHHhh--cCcEEEEEEeCCCCCCCCccchHHHHHHhhh--
Q 026511           84 DEKKIISVNNLRGIARLVICSGP--ASYIMESFKRSEPFTESLLE--RGVLVVSFTTDGNIPSFEFEESEEMKEFTRK--  157 (237)
Q Consensus        84 ~~~r~v~l~~LR~~aRvVI~AG~--~e~V~~al~~a~~~~~~L~~--r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~--  157 (237)
                      .+|+.+++++|||..-+|..-.+  ...+...+.....+.++|.+  .+|.+|-|..+....     ..+..+++...  
T Consensus        19 ~~G~~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~D-----tp~~l~~y~~~~~   93 (172)
T d1xzoa1          19 QDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPEND-----KPKQLKKFAANYP   93 (172)
T ss_dssp             TTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTC-----CHHHHHHHHTTSC
T ss_pred             CCCCEEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccccccc-----hHHHHHHHHHHhc
Confidence            45899999999997655544222  12334444444455666655  358888887754211     11233333322  


Q ss_pred             -hccceEEe-ecccchHHHHHHHHHHHc-CCCCCC------CeEEEEeeCCeeec--ccCCCCcHHHHhhcCC
Q 026511          158 -RKRLWQLT-PVYVSEWSKWLDEQKRTA-GISPES------PVYLSLRLDGRVRG--SGVGYPPWNAFVAQLP  219 (237)
Q Consensus       158 -~~~~~~a~-Pv~~~~W~~wi~eq~~~A-gv~~~~------gvyi~lr~dGrVr~--SG~G~PpW~~~v~eLp  219 (237)
                       ....|... -.+.....++........ +.+..+      ..++.+..||+|++  .|.-.+|+++++++|-
T Consensus        94 ~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~~l~~dik  166 (172)
T d1xzoa1          94 LSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVK  166 (172)
T ss_dssp             CCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHH
T ss_pred             cccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEEEcCCCCCCHHHHHHHHH
Confidence             12345432 223344555543333211 222111      24678999999995  4777788999998764

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=93.48  E-value=0.4  Score=36.36  Aligned_cols=116  Identities=14%  Similarity=0.125  Sum_probs=68.7

Q ss_pred             CCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhhccceE
Q 026511           85 EKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQ  163 (237)
Q Consensus        85 ~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~~~~~  163 (237)
                      +|+.++|++|+|..=++....+ =.++...+...+.+.+.....++-||.|..+..++.       ..+++....  .+.
T Consensus        45 ~G~~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~-------~~~~~~~~~--~~~  115 (176)
T d1jfua_          45 DGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPE-------KPKTFLKEA--NLT  115 (176)
T ss_dssp             TSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTT-------HHHHHHHHT--TCC
T ss_pred             CcCEEeHHHhCCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchh-------hhhhhHhhh--CCc
Confidence            4899999999997655555333 345666666777778888889999998877543222       223332222  221


Q ss_pred             Eeeccc-chHHHHHHHHHHHc-CCCCCCCeEEEEeeCCeeecccCCCCcHH
Q 026511          164 LTPVYV-SEWSKWLDEQKRTA-GISPESPVYLSLRLDGRVRGSGVGYPPWN  212 (237)
Q Consensus       164 a~Pv~~-~~W~~wi~eq~~~A-gv~~~~gvyi~lr~dGrVr~SG~G~PpW~  212 (237)
                      -.++.. ....  +..+.... ++ ..-+-+++|.+||+|+.+=.|.-.|+
T Consensus       116 ~~~~~~d~~~~--~~~~~~~~~~v-~~~P~~~lID~~G~I~~~~~G~~~~~  163 (176)
T d1jfua_         116 RLGYFNDQKAK--VFQDLKAIGRA-LGMPTSVLVDPQGCEIATIAGPAEWA  163 (176)
T ss_dssp             TTCCEECTTCH--HHHHHHTTTCC-SSSSEEEEECTTSBEEEEEESCCCTT
T ss_pred             ceeeeecchhH--HHHHHhhhccC-CCCCeEEEEcCCCEEEEEEECCCCCC
Confidence            111111 1111  22222222 22 11368899999999999988877774

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.12  E-value=2.1  Score=31.25  Aligned_cols=111  Identities=8%  Similarity=0.087  Sum_probs=65.8

Q ss_pred             cCCceeehhhhcCcceEEEEe--cC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhhcc
Q 026511           84 DEKKIISVNNLRGIARLVICS--GP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKR  160 (237)
Q Consensus        84 ~~~r~v~l~~LR~~aRvVI~A--G~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~~  160 (237)
                      .+|+.++|+++++...+|++-  ++ -..+..-+.......+++.+.|+-|+-+..+.         .+...++......
T Consensus        16 ~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d~---------~~~~~~~~~~~~~   86 (153)
T d1xvwa1          16 QNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGP---------PPTHKIWATQSGF   86 (153)
T ss_dssp             TTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCC---------HHHHHHHHHHHTC
T ss_pred             CCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhcccccccccccchh---------hhHHHHHhhhhcc
Confidence            458999999999988777764  32 23566667777777778899999888876632         2233333333333


Q ss_pred             ceEEeecccchHHHHHHHHHH-HcCCCCC-CC----eEEEEeeCCeeecccCCCC
Q 026511          161 LWQLTPVYVSEWSKWLDEQKR-TAGISPE-SP----VYLSLRLDGRVRGSGVGYP  209 (237)
Q Consensus       161 ~~~a~Pv~~~~W~~wi~eq~~-~Agv~~~-~g----vyi~lr~dGrVr~SG~G~P  209 (237)
                      .|...- + ...    +.++. .-|+-.+ .|    -+++|.+||+|+.+.++.|
T Consensus        87 ~~~~l~-~-~~~----~~~~~~~ygv~~~~~g~~~r~tfvID~~G~I~~~~~~~~  135 (153)
T d1xvwa1          87 TFPLLS-D-FWP----HGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQP  135 (153)
T ss_dssp             CSCEEE-C-TTT----TTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEECCT
T ss_pred             ceeEEe-c-ccc----cchhHHHhhhhhhccCceeeeEEEECCCCEEEEEEEeCC
Confidence            333221 1 000    01111 1254222 23    3578999999998876544

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=82.96  E-value=6.8  Score=28.49  Aligned_cols=106  Identities=16%  Similarity=0.209  Sum_probs=66.9

Q ss_pred             cCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhc-CcEEEEEEeCCCCCCCCccchHHHHHHhhhhccc
Q 026511           84 DEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLER-GVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRL  161 (237)
Q Consensus        84 ~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r-~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~~~  161 (237)
                      +++..++|++|+|..-++-.-++ =..+.+.+-..+.+.+++.+. ++.||-|.++.+        .++..++.  .+..
T Consensus        16 ~~~~~v~ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~--------~~~~~~~~--~~~~   85 (144)
T d1i5ga_          16 GAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDES--------AEDFKDYY--AKMP   85 (144)
T ss_dssp             TTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSS--------HHHHHHHH--TTCS
T ss_pred             CCCCEeeHHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEecccc--------HHHHHHHH--HhCC
Confidence            34778999999997655544333 556667777777777777765 677888877532        12223322  2356


Q ss_pred             eEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeC-Ceeec
Q 026511          162 WQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLD-GRVRG  203 (237)
Q Consensus       162 ~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~d-GrVr~  203 (237)
                      |...|+........+.++   -|+. .-+-++.|.+| |+|..
T Consensus        86 ~~~~~~~d~~~~~~l~~~---y~v~-~iPt~~lid~~~G~vi~  124 (144)
T d1i5ga_          86 WLALPFEDRKGMEFLTTG---FDVK-SIPTLVGVEADSGNIIT  124 (144)
T ss_dssp             SEECCTTCHHHHHHHHHH---TTCC-SSSEEEEEETTTCCEEE
T ss_pred             CCceeeEChHHHHHHHHH---CCCC-CcCEEEEEeCCCCEEEe
Confidence            777777655544444432   2542 25789999997 89853

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=82.26  E-value=6.9  Score=28.10  Aligned_cols=109  Identities=17%  Similarity=0.235  Sum_probs=70.1

Q ss_pred             ecCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHh-hcCcEEEEEEeCCCCCCCCccchHHHHHHhhhhcc
Q 026511           83 VDEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLL-ERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKR  160 (237)
Q Consensus        83 l~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~-~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~~  160 (237)
                      ..++..++|++|||..-++-.-.+ =..+.+.+...+.+.+++. +.++.|+.|..+..        .+...++.  .+.
T Consensus        15 ~~~~~~v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~--------~~~~~~~~--~~~   84 (144)
T d1o73a_          15 LSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDEN--------ESDFHDYY--GKM   84 (144)
T ss_dssp             BCTTSCBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSS--------HHHHHHHH--TTC
T ss_pred             ccCCCEEeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchh--------HHHHHHHH--Hhc
Confidence            344677999999998666665444 4556666666666767774 56899999987432        12223322  235


Q ss_pred             ceEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeC-Ceeeccc
Q 026511          161 LWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLD-GRVRGSG  205 (237)
Q Consensus       161 ~~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~d-GrVr~SG  205 (237)
                      .|.-.|.+.+.+..=+..+.   |+. .-|-+++|.+| |+|..+-
T Consensus        85 ~~~~~~~~~~~~~~~l~~~y---~v~-~~Pt~~lID~~~G~Ii~~~  126 (144)
T d1o73a_          85 PWLALPFDQRSTVSELGKTF---GVE-SIPTLITINADTGAIIGTQ  126 (144)
T ss_dssp             SSEECCTTCHHHHHHHHHHH---TCC-SSSEEEEEETTTCCEEESC
T ss_pred             cccceeeeccchHHHHHHHc---CCC-cCCEEEEEECCCCEEEeec
Confidence            66677877776664343333   542 24789999998 9998753

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=80.78  E-value=1.4  Score=32.27  Aligned_cols=119  Identities=12%  Similarity=0.133  Sum_probs=67.4

Q ss_pred             CCceeehhhhc--CcceEEEEe-c-ChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhhcc
Q 026511           85 EKKIISVNNLR--GIARLVICS-G-PASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKR  160 (237)
Q Consensus        85 ~~r~v~l~~LR--~~aRvVI~A-G-~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~~  160 (237)
                      +++.++|+++.  +..-|++.. + --..+..-+...+.+.+++.+.++.||-+..+.         .+..++......-
T Consensus        17 ~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~---------~~~~~~~~~~~~~   87 (160)
T d2cx4a1          17 DFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDS---------PWCLKKFKDENRL   87 (160)
T ss_dssp             TSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSC---------HHHHHHHHHHHTC
T ss_pred             CCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccc---------hhhhhhhccccee
Confidence            48999999995  433333332 3 345777778888888889999999998887632         1122222222222


Q ss_pred             ceEEeecccchHHHHHHHHHHHcCCCC---------CCCeEEEEeeCCeeecccC-----CCCcHHHHhhcCC
Q 026511          161 LWQLTPVYVSEWSKWLDEQKRTAGISP---------ESPVYLSLRLDGRVRGSGV-----GYPPWNAFVAQLP  219 (237)
Q Consensus       161 ~~~a~Pv~~~~W~~wi~eq~~~Agv~~---------~~gvyi~lr~dGrVr~SG~-----G~PpW~~~v~eLp  219 (237)
                      .|.... +.+.  + +-.   .-|+..         ..+-++++..||+|+.+.+     +.|+..++++++.
T Consensus        88 ~~~~l~-D~~~--~-~~~---~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~~l~  153 (160)
T d2cx4a1          88 AFNLLS-DYNR--E-VIK---LYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREAN  153 (160)
T ss_dssp             SSEEEE-CTTS--H-HHH---HTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHHHHH
T ss_pred             eEEEee-cCCc--c-hHH---HcCccccccccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHHHHH
Confidence            332211 1110  0 111   113210         0234688999999998754     4456677776654