Citrus Sinensis ID: 026520

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
MHCKEGFPVFQDAKRAQQPSKTYIRYQTRHKRADAKRALKDLLFRSGSSNFSFQNEDPIWKFDGNCEGDIGSDRKGQSKSSARRFGKPDLKRKKRKFRRESFSEDFDDPETIFQERFGNRWYSWTYQKREESSFQYSTSGFEWRKHSNRTDHRTKDWENESDIESDDEQCTVGSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS
ccccccccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHcccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcc
ccccccccccHccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHccccccccccccccccccccccccccccccccccccEccccccccccccHHHHHccccEEEEEEcccccccccccccccEEccccccccccEcccccccccccccccccccccHHHHHccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHc
mhckegfpvfqdakraqqpsktyIRYQTRHKRADAKRALKDLLFrsgssnfsfqnedpiwkfdgncegdigsdrkgqskssarrfgkpdlkrkkrkfrresfsedfddpetifqerfgnrwyswtyqkreessfqystsgfewrkhsnrtdhrtkdwenesdiesddeqctvgsssdrtilglppsgplklddvKNAFRLSalkwhpdkhqgssqAMAEEKFKLCLNAYKSLCAALS
mhckegfpvfqdakraqqpsktyiryqtrhkrADAKRALKDLLFRsgssnfsfqnedpiWKFDGNCEGdigsdrkgqskssarrfgkpdlkrkkrkfrresfsedfddpetifqerfgnrWYSWTYQKREEssfqystsgfewrkhsnrtdhrtkdwenesdiesddeqctvgsssdrtilglppsgplkLDDVKNAFRLSALkwhpdkhqgssQAMAEEKFKLCLNAYKSLCAALS
MHCKEGFPVFQDAKRAQQPSKTYIRYQTRHKRADAKRALKDLLFRSGSSNFSFQNEDPIWKFDGNCEGDIGSDRKGQSKSSARRFGKPDLkrkkrkfrresfseDFDDPETIFQERFGNRWYSWTYQKREESSFQYSTSGFEWRKHSNRTDHRTKDWENESDIESDDEQCTVGSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS
****************************************DLLF********F**EDPIWKFDGNC********************************************TIFQERFGNRWYSWTYQK*******************************************************************NAFRLSALKW***************KFKLCLNAYKSLCA***
****************************************DLLFRS*****************************************************ESFSEDFDDPETIFQERFGNRWYSW*****************************************************RTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSS*AMAEEKFKLCLNAYKSLCAAL*
MHCKEGFPVFQDAKRAQQPSKTYIRYQTRHKRADAKRALKDLLFRSGSSNFSFQNEDPIWKFDGNCEGDI***************GKPDLKRKKRKFRRESFSEDFDDPETIFQERFGNRWYSWTYQKREESSFQYSTSGFEW*********************************DRTILGLPPSGPLKLDDVKNAFRLSALKWH***********AEEKFKLCLNAYKSLCAALS
*******************SKTYIRYQTRHKRADAKRALKDLLFRSG***********************************************RKFRRESFSEDFDDPETIFQERFGNRWYSWTYQKR********************************************SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MHCKEGFPVFQDAKRAQQPSKTYIRYQTRHKRADAKRALKDLLFRSGSSNFSFQNEDPIWKFDGNCEGDIGSDRKGQSKSSARRFGKPDLKRKKRKFRRESFSEDFDDPETIFQERFGNRWYSWTYQKREESSFQYSTSGFEWRKHSNRTDHRTKDWENESDIESDDEQCTVGSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query237 2.2.26 [Sep-21-2011]
A1WAR7 376 Chaperone protein DnaJ OS yes no 0.215 0.135 0.433 0.0003
A9BNG6 380 Chaperone protein DnaJ OS yes no 0.172 0.107 0.512 0.0003
B9MDJ8 376 Chaperone protein DnaJ OS yes no 0.215 0.135 0.433 0.0005
A6LRN5 377 Chaperone protein DnaJ OS yes no 0.164 0.103 0.512 0.0008
B2TLZ8 373 Chaperone protein DnaJ OS yes no 0.164 0.104 0.512 0.0009
B2V2I6 373 Chaperone protein DnaJ OS yes no 0.164 0.104 0.512 0.0009
>sp|A1WAR7|DNAJ_ACISJ Chaperone protein DnaJ OS=Acidovorax sp. (strain JS42) GN=dnaJ PE=3 SV=1 Back     alignment and function desciption
 Score = 45.8 bits (107), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 2/53 (3%)

Query: 180 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 232
           +LG+P +     D++K A+R  A+K+HPD++QG +   AEEKFK    AY+ L
Sbjct: 9   VLGVPKNA--SDDEIKKAYRKLAMKYHPDRNQGDAAKPAEEKFKEAKEAYEIL 59
Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
Acidovorax sp. (strain JS42) (taxid: 232721)
>sp|A9BNG6|DNAJ_DELAS Chaperone protein DnaJ OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=dnaJ PE=3 SV=1 Back     alignment and function description
>sp|B9MDJ8|DNAJ_ACIET Chaperone protein DnaJ OS=Acidovorax ebreus (strain TPSY) GN=dnaJ PE=3 SV=1 Back     alignment and function description
>sp|A6LRN5|DNAJ_CLOB8 Chaperone protein DnaJ OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=dnaJ PE=3 SV=1 Back     alignment and function description
>sp|B2TLZ8|DNAJ_CLOBB Chaperone protein DnaJ OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=dnaJ PE=3 SV=1 Back     alignment and function description
>sp|B2V2I6|DNAJ_CLOBA Chaperone protein DnaJ OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=dnaJ PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query237
255562395255 heat shock protein binding protein, puta 0.949 0.882 0.574 5e-71
225431605285 PREDICTED: uncharacterized protein LOC10 0.936 0.778 0.621 3e-68
356509006263 PREDICTED: uncharacterized protein LOC10 0.915 0.825 0.600 3e-64
356530728262 PREDICTED: uncharacterized protein LOC10 0.894 0.809 0.605 4e-64
388513353273 unknown [Medicago truncatula] 0.932 0.809 0.588 2e-61
357464517283 hypothetical protein MTR_3g095470 [Medic 0.932 0.780 0.572 8e-60
449459294275 PREDICTED: uncharacterized protein LOC10 0.957 0.825 0.539 2e-59
449511167283 PREDICTED: uncharacterized protein LOC10 0.945 0.791 0.540 8e-59
118483161268 unknown [Populus trichocarpa] 0.915 0.809 0.548 3e-58
224116654264 predicted protein [Populus trichocarpa] 0.915 0.821 0.548 3e-58
>gi|255562395|ref|XP_002522204.1| heat shock protein binding protein, putative [Ricinus communis] gi|223538575|gb|EEF40179.1| heat shock protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 150/261 (57%), Positives = 177/261 (67%), Gaps = 36/261 (13%)

Query: 7   FPVFQDAKRAQQPSK---------TYIRYQTRHKRADAKRALKDLLFRSGSSNFSFQ--- 54
            P     +R QQPSK          YIRY  R KRADAKRALKDLLF+SG++  SFQ   
Sbjct: 1   MPPAMGIRRFQQPSKFPDTEIFIQNYIRYAVRQKRADAKRALKDLLFKSGATKASFQSGQ 60

Query: 55  ------------------NEDPIWKFDGNCEGDIGSDRKGQSKSSARRFGKPDLKRKKRK 96
                             +E+PIW FD   E   G+D+K Q KSSAR   K +  + KRK
Sbjct: 61  INYFIWVVIHALLCTRTQDEEPIWSFDP--EQPKGTDKKRQPKSSARNSRKFNHNKMKRK 118

Query: 97  FRRESFSEDFDDPETIFQERFGNRWYSWTYQKREESSFQYSTSGFEWRKHSNRTDHRTKD 156
           FRRESF++D DDPET+FQ  FGNRWY+W++    ESSF+ ST GFEWR+H N+T HR K 
Sbjct: 119 FRRESFTDD-DDPETMFQATFGNRWYTWSFN---ESSFRSSTFGFEWREHPNQTHHRDKK 174

Query: 157 WENESDIESDDEQCTVGSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQA 216
           W   +D ESD E C++GS  DRTILGLP SGPL+++DVKNAFR+SALKWHPDKHQG SQA
Sbjct: 175 WNFGTDTESDSESCSIGSYHDRTILGLPASGPLRIEDVKNAFRMSALKWHPDKHQGPSQA 234

Query: 217 MAEEKFKLCLNAYKSLCAALS 237
            AEEKFKLC+NAYKSLC ALS
Sbjct: 235 KAEEKFKLCVNAYKSLCDALS 255

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225431605|ref|XP_002282776.1| PREDICTED: uncharacterized protein LOC100267710 [Vitis vinifera] gi|296088617|emb|CBI37608.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356509006|ref|XP_003523243.1| PREDICTED: uncharacterized protein LOC100526896 [Glycine max] Back     alignment and taxonomy information
>gi|356530728|ref|XP_003533932.1| PREDICTED: uncharacterized protein LOC100787858 [Glycine max] Back     alignment and taxonomy information
>gi|388513353|gb|AFK44738.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|357464517|ref|XP_003602540.1| hypothetical protein MTR_3g095470 [Medicago truncatula] gi|355491588|gb|AES72791.1| hypothetical protein MTR_3g095470 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449459294|ref|XP_004147381.1| PREDICTED: uncharacterized protein LOC101222821 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449511167|ref|XP_004163882.1| PREDICTED: uncharacterized protein LOC101224255 [Cucumis sativus] Back     alignment and taxonomy information
>gi|118483161|gb|ABK93486.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224116654|ref|XP_002331893.1| predicted protein [Populus trichocarpa] gi|222874642|gb|EEF11773.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query237
TAIR|locus:504955938268 AT2G18465 "AT2G18465" [Arabido 0.894 0.791 0.413 7.4e-34
TAIR|locus:2064622263 AT2G42080 "AT2G42080" [Arabido 0.556 0.501 0.442 3.8e-23
TAIR|locus:2095818254 AT3G58020 [Arabidopsis thalian 0.848 0.791 0.357 2.8e-18
GENEDB_PFALCIPARUM|PFE0055c 402 PFE0055c "heat shock protein, 0.413 0.243 0.339 0.00024
UNIPROTKB|Q8I489 402 PFE0055c "Heat shock protein, 0.413 0.243 0.339 0.00024
UNIPROTKB|Q5T657155 DNAJB5 "DnaJ homolog subfamily 0.202 0.309 0.490 0.00034
UNIPROTKB|B0CM59 277 DNAJB2 "DnaJ homolog, subfamil 0.210 0.180 0.452 0.0006
UNIPROTKB|Q58DD3 278 DNAJB2 "DnaJ (Hsp40) homolog, 0.210 0.179 0.452 0.00061
ZFIN|ZDB-GENE-040801-192 340 dnajb4 "DnaJ (Hsp40) homolog, 0.160 0.111 0.536 0.00068
UNIPROTKB|P25686 324 DNAJB2 "DnaJ homolog subfamily 0.210 0.154 0.452 0.00082
TAIR|locus:504955938 AT2G18465 "AT2G18465" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 95/230 (41%), Positives = 122/230 (53%)

Query:    12 DAKRAQQPSKTYIRYQTRHK-RADAKRALKDLLFRSGSSNFSFQNEDPIWKFDGNCEGDI 70
             + +R+ + S        + K R  AK+ +  LLF  G  N   QNE   W F  +    +
Sbjct:    53 EGERSSKNSSIRFTCTVKEKGRTSAKKTVDKLLFHRGI-NDPLQNE---WHFGPS---PL 105

Query:    71 GSDRKGQSKSSARRFGKPDLXXXXXXXXXXXXXXDFDDPETIFQERFGNRWYS-WTYQKR 129
               DR  + KS   R  KP                DF    T     F N+W   WT Q +
Sbjct:   106 IRDRHMKKKSPPGRGKKPRDKKTKRWHREGNPDDDFG---TDANNTFENKWRERWTAQSQ 162

Query:   130 EESSFQYSTSGFEWRKHSNRT--DHRTKDWENESDIESDDEQCTVGSSSDRTILGLPPSG 187
             + S  + ST+GFEWR+  + T    R+K W  ES     DE   V   S+R +LGLP  G
Sbjct:   163 KASYSKDSTAGFEWREGWSWTTQSQRSKSWNKESF----DEPLNVEFRSERIVLGLPLDG 218

Query:   188 PLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS 237
             P+K+DDVKNAFR SALKWHPDKHQG SQ  A+EKFKLC++AYKSLC+AL+
Sbjct:   219 PIKVDDVKNAFRSSALKWHPDKHQGPSQVAAQEKFKLCVDAYKSLCSALA 268
GO:0006457 "protein folding" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0031072 "heat shock protein binding" evidence=IEA
TAIR|locus:2064622 AT2G42080 "AT2G42080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095818 AT3G58020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PFE0055c PFE0055c "heat shock protein, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8I489 PFE0055c "Heat shock protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
UNIPROTKB|Q5T657 DNAJB5 "DnaJ homolog subfamily B member 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B0CM59 DNAJB2 "DnaJ homolog, subfamily B, member 2, isoform 1 (Predicted)" [Papio anubis (taxid:9555)] Back     alignment and assigned GO terms
UNIPROTKB|Q58DD3 DNAJB2 "DnaJ (Hsp40) homolog, subfamily B, member 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040801-192 dnajb4 "DnaJ (Hsp40) homolog, subfamily B, member 4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P25686 DNAJB2 "DnaJ homolog subfamily B member 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.01850013
SubName- Full=Putative uncharacterized protein; (265 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query237
smart0027160 smart00271, DnaJ, DnaJ molecular chaperone homolog 3e-10
pfam0022663 pfam00226, DnaJ, DnaJ domain 7e-08
cd0625755 cd06257, DnaJ, DnaJ domain or J-domain 1e-07
COG0484 371 COG0484, DnaJ, DnaJ-class molecular chaperone with 2e-06
PRK14297 380 PRK14297, PRK14297, chaperone protein DnaJ; Provis 5e-06
PRK10767 371 PRK10767, PRK10767, chaperone protein DnaJ; Provis 5e-06
PRK14290 365 PRK14290, PRK14290, chaperone protein DnaJ; Provis 2e-05
TIGR02349 354 TIGR02349, DnaJ_bact, chaperone protein DnaJ 4e-05
PRK14289 386 PRK14289, PRK14289, chaperone protein DnaJ; Provis 8e-05
PRK14281 397 PRK14281, PRK14281, chaperone protein DnaJ; Provis 2e-04
PRK14286 372 PRK14286, PRK14286, chaperone protein DnaJ; Provis 4e-04
PRK14298 377 PRK14298, PRK14298, chaperone protein DnaJ; Provis 5e-04
PRK10266 306 PRK10266, PRK10266, curved DNA-binding protein Cbp 0.001
PRK14294 366 PRK14294, PRK14294, chaperone protein DnaJ; Provis 0.002
PRK14284 391 PRK14284, PRK14284, chaperone protein DnaJ; Provis 0.003
PRK14295 389 PRK14295, PRK14295, chaperone protein DnaJ; Provis 0.003
>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain Back     alignment and domain information 
 Score = 53.8 bits (130), Expect = 3e-10
 Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 180 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLC 233
           ILG+P    L  D++K A+R  ALK+HPDK+ G  +  AEEKFK    AY+ L 
Sbjct: 6   ILGVPRDASL--DEIKKAYRKLALKYHPDKNPG-DKEEAEEKFKEINEAYEVLS 56

Length = 60
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain Back     alignment and domain information
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain Back     alignment and domain information
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ Back     alignment and domain information
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 237
COG0484 371 DnaJ DnaJ-class molecular chaperone with C-termina 99.78
KOG0713 336 consensus Molecular chaperone (DnaJ superfamily) [ 99.72
PRK14288 369 chaperone protein DnaJ; Provisional 99.65
smart0027160 DnaJ DnaJ molecular chaperone homology domain. 99.65
PRK14296 372 chaperone protein DnaJ; Provisional 99.63
cd0625755 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho 99.61
PRK14279 392 chaperone protein DnaJ; Provisional 99.61
PRK14286 372 chaperone protein DnaJ; Provisional 99.61
PRK14282 369 chaperone protein DnaJ; Provisional 99.58
PF0022664 DnaJ: DnaJ domain; InterPro: IPR001623 The prokary 99.57
PRK14285 365 chaperone protein DnaJ; Provisional 99.57
PRK14287 371 chaperone protein DnaJ; Provisional 99.57
PTZ00037 421 DnaJ_C chaperone protein; Provisional 99.57
PRK14297 380 chaperone protein DnaJ; Provisional 99.57
PRK14277 386 chaperone protein DnaJ; Provisional 99.56
PRK14294 366 chaperone protein DnaJ; Provisional 99.56
PRK14295 389 chaperone protein DnaJ; Provisional 99.56
PRK14301 373 chaperone protein DnaJ; Provisional 99.56
PRK14283 378 chaperone protein DnaJ; Provisional 99.55
KOG0717 508 consensus Molecular chaperone (DnaJ superfamily) [ 99.55
PRK14276 380 chaperone protein DnaJ; Provisional 99.55
PRK10767 371 chaperone protein DnaJ; Provisional 99.55
PRK14299 291 chaperone protein DnaJ; Provisional 99.54
PRK14280 376 chaperone protein DnaJ; Provisional 99.54
PRK14278 378 chaperone protein DnaJ; Provisional 99.54
PRK14281 397 chaperone protein DnaJ; Provisional 99.53
PRK14298 377 chaperone protein DnaJ; Provisional 99.52
PRK14291 382 chaperone protein DnaJ; Provisional 99.52
KOG0691 296 consensus Molecular chaperone (DnaJ superfamily) [ 99.5
PRK14290 365 chaperone protein DnaJ; Provisional 99.5
PRK14289 386 chaperone protein DnaJ; Provisional 99.5
PRK10266 306 curved DNA-binding protein CbpA; Provisional 99.49
KOG0716 279 consensus Molecular chaperone (DnaJ superfamily) [ 99.48
PRK14300 372 chaperone protein DnaJ; Provisional 99.45
KOG0715 288 consensus Molecular chaperone (DnaJ superfamily) [ 99.45
PRK14293 374 chaperone protein DnaJ; Provisional 99.44
KOG0718 546 consensus Molecular chaperone (DnaJ superfamily) [ 99.44
COG2214 237 CbpA DnaJ-class molecular chaperone [Posttranslati 99.42
KOG0719 264 consensus Molecular chaperone (DnaJ superfamily) [ 99.4
KOG0721230 consensus Molecular chaperone (DnaJ superfamily) [ 99.37
PTZ00341 1136 Ring-infected erythrocyte surface antigen; Provisi 99.36
PRK05014 171 hscB co-chaperone HscB; Provisional 99.36
PRK00294 173 hscB co-chaperone HscB; Provisional 99.33
PHA03102153 Small T antigen; Reviewed 99.33
PRK01356 166 hscB co-chaperone HscB; Provisional 99.31
PRK09430267 djlA Dna-J like membrane chaperone protein; Provis 99.31
PRK03578 176 hscB co-chaperone HscB; Provisional 99.29
PTZ00100116 DnaJ chaperone protein; Provisional 99.26
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 99.18
KOG0714 306 consensus Molecular chaperone (DnaJ superfamily) [ 99.12
KOG0720 490 consensus Molecular chaperone (DnaJ superfamily) [ 99.06
PRK01773 173 hscB co-chaperone HscB; Provisional 98.98
PHA02624 647 large T antigen; Provisional 98.98
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 98.96
KOG0722 329 consensus Molecular chaperone (DnaJ superfamily) [ 98.93
COG5407 610 SEC63 Preprotein translocase subunit Sec63 [Intrac 98.88
KOG0712 337 consensus Molecular chaperone (DnaJ superfamily) [ 98.72
KOG1150 250 consensus Predicted molecular chaperone (DnaJ supe 98.64
PRK14284 391 chaperone protein DnaJ; Provisional 98.64
TIGR02349 354 DnaJ_bact chaperone protein DnaJ. This model repre 98.58
PRK14292 371 chaperone protein DnaJ; Provisional 98.56
COG5269 379 ZUO1 Ribosome-associated chaperone zuotin [Transla 98.31
KOG1789 2235 consensus Endocytosis protein RME-8, contains DnaJ 98.2
TIGR03835 871 termin_org_DnaJ terminal organelle assembly protei 98.13
KOG0723112 consensus Molecular chaperone (DnaJ superfamily) [ 97.89
KOG0568 342 consensus Molecular chaperone (DnaJ superfamily) [ 97.76
COG1076174 DjlA DnaJ-domain-containing proteins 1 [Posttransl 97.14
KOG0431453 consensus Auxilin-like protein and related protein 96.88
KOG3192168 consensus Mitochondrial J-type chaperone [Posttran 96.76
COG1076 174 DjlA DnaJ-domain-containing proteins 1 [Posttransl 95.75
PF03656127 Pam16: Pam16; InterPro: IPR005341 The Pam16 protei 91.47
PF1344662 RPT: A repeated domain in UCH-protein 87.61
PF14687112 DUF4460: Domain of unknown function (DUF4460) 87.58
TIGR00714 157 hscB Fe-S protein assembly co-chaperone HscB. This 86.48
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=99.78  E-value=1.5e-19  Score=169.98  Aligned_cols=61  Identities=34%  Similarity=0.516  Sum_probs=57.4

Q ss_pred             CccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhcccCC
Q 026520          173 GSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  237 (237)
Q Consensus       173 ~~~d~Y~VLGL~~~a~~s~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFq~I~eAYevLsDp~k  237 (237)
                      ...|||+||||+++|  +.+|||+|||+||++||||++++.  ++|+++|++|++||+||+||++
T Consensus         2 ~~~dyYeiLGV~k~A--s~~EIKkAYRkLA~kyHPD~n~g~--~~AeeKFKEI~eAYEVLsD~eK   62 (371)
T COG0484           2 AKRDYYEILGVSKDA--SEEEIKKAYRKLAKKYHPDRNPGD--KEAEEKFKEINEAYEVLSDPEK   62 (371)
T ss_pred             CccchhhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHHHHHHhCCHHH
Confidence            357999999999999  999999999999999999999975  7999999999999999999974

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>smart00271 DnaJ DnaJ molecular chaperone homology domain Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>cd06257 DnaJ DnaJ domain or J-domain Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein [] Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14299 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10266 curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional Back     alignment and domain information
>PRK05014 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PRK00294 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PHA03102 Small T antigen; Reviewed Back     alignment and domain information
>PRK01356 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional Back     alignment and domain information
>PRK03578 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PTZ00100 DnaJ chaperone protein; Provisional Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK01773 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PHA02624 large T antigen; Provisional Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ Back     alignment and domain information
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only] Back     alignment and domain information
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) [] Back     alignment and domain information
>PF13446 RPT: A repeated domain in UCH-protein Back     alignment and domain information
>PF14687 DUF4460: Domain of unknown function (DUF4460) Back     alignment and domain information
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query237
2lgw_A99 Solution Structure Of The J Domain Of Hsj1a Length 1e-04
2dmx_A92 Solution Structure Of The J Domain Of Dnaj Homolog 4e-04
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99 Back     alignment and structure 
Iteration: 1

 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 180 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLC 233
           IL +P S     DD+K A+R  AL+WHPDK+   ++  AE+KFK    AY+ L 
Sbjct: 7   ILDVPRSA--SADDIKKAYRRKALQWHPDKNP-DNKEFAEKKFKEVAEAYEVLS 57
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query237
1iur_A88 KIAA0730 protein; DNAJ like domain, riken structur 3e-08
2qsa_A109 DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s 6e-08
2ej7_A82 HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati 9e-08
2dmx_A92 DNAJ homolog subfamily B member 8; DNAJ J domain, 9e-08
2lgw_A99 DNAJ homolog subfamily B member 2; J domain, HSJ1A 1e-07
2l6l_A155 DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, 3e-07
1hdj_A77 Human HSP40, HDJ-1; molecular chaperone; NMR {Homo 3e-07
2ctw_A109 DNAJ homolog subfamily C member 5; J-domain, chape 4e-07
2och_A73 Hypothetical protein DNJ-12; HSP40, J-domain, chap 5e-07
2yua_A99 Williams-beuren syndrome chromosome region 18 prot 6e-07
2o37_A92 Protein SIS1; HSP40, J-domain, cochaperone, APC900 1e-06
1wjz_A94 1700030A21RIK protein; J-domain, DNAJ like protein 2e-06
2ctq_A112 DNAJ homolog subfamily C member 12; J-domain, chap 2e-06
1bq0_A103 DNAJ, HSP40; chaperone, heat shock, protein foldin 3e-06
3hho_A 174 CO-chaperone protein HSCB homolog; structural geno 4e-06
3apq_A 210 DNAJ homolog subfamily C member 10; thioredoxin fo 5e-06
1fpo_A 171 HSC20, chaperone protein HSCB; molecular chaperone 6e-06
2dn9_A79 DNAJ homolog subfamily A member 3; J-domain, TID1, 7e-06
1gh6_A114 Large T antigen; tumor suppressor, oncoprotein, an 8e-06
2ys8_A90 RAB-related GTP-binding protein RABJ; DNAJ domain, 1e-05
2ctp_A78 DNAJ homolog subfamily B member 12; J-domain, chap 1e-05
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 2e-05
2pf4_E 174 Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, 2e-05
2ctr_A88 DNAJ homolog subfamily B member 9; J-domain, chape 3e-05
2qwo_B92 Putative tyrosine-protein phosphatase auxilin; cha 5e-05
1faf_A79 Large T antigen; J domain, HPD motif, anti-paralle 6e-05
2cug_A88 Mkiaa0962 protein; DNAJ-like domain, structural ge 6e-05
3apo_A 780 DNAJ homolog subfamily C member 10; PDI family, th 1e-04
1n4c_A182 Auxilin; four helix bundle, protein binding; NMR { 2e-04
3lz8_A 329 Putative chaperone DNAJ; structure genomics, struc 6e-04
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88 Back     alignment and structure
 Score = 48.6 bits (116), Expect = 3e-08
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 180 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 232
           ++       L   + K   R   LKWHPDK+   +  +A E FK   N    L
Sbjct: 21  VVEQAWK--LPESERKKIIRRLYLKWHPDKNPE-NHDIANEVFKHLQNEINRL 70
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109 Back     alignment and structure
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82 Back     alignment and structure
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99 Back     alignment and structure
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155 Back     alignment and structure
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77 Back     alignment and structure
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109 Back     alignment and structure
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73 Back     alignment and structure
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 Back     alignment and structure
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92 Back     alignment and structure
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94 Back     alignment and structure
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112 Back     alignment and structure
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103 Back     alignment and structure
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210 Back     alignment and structure
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171 Back     alignment and structure
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114 Back     alignment and structure
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90 Back     alignment and structure
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 Back     alignment and structure
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174 Back     alignment and structure
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92 Back     alignment and structure
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79 Back     alignment and structure
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88 Back     alignment and structure
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780 Back     alignment and structure
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182 Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query237
2ys8_A90 RAB-related GTP-binding protein RABJ; DNAJ domain, 99.69
1wjz_A94 1700030A21RIK protein; J-domain, DNAJ like protein 99.69
2ej7_A82 HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati 99.68
2dn9_A79 DNAJ homolog subfamily A member 3; J-domain, TID1, 99.68
2yua_A99 Williams-beuren syndrome chromosome region 18 prot 99.67
2dmx_A92 DNAJ homolog subfamily B member 8; DNAJ J domain, 99.66
2ctr_A88 DNAJ homolog subfamily B member 9; J-domain, chape 99.66
1iur_A88 KIAA0730 protein; DNAJ like domain, riken structur 99.65
2ctp_A78 DNAJ homolog subfamily B member 12; J-domain, chap 99.65
1hdj_A77 Human HSP40, HDJ-1; molecular chaperone; NMR {Homo 99.65
2ctq_A112 DNAJ homolog subfamily C member 12; J-domain, chap 99.65
2ctw_A109 DNAJ homolog subfamily C member 5; J-domain, chape 99.63
2cug_A88 Mkiaa0962 protein; DNAJ-like domain, structural ge 99.63
2lgw_A99 DNAJ homolog subfamily B member 2; J domain, HSJ1A 99.63
2och_A73 Hypothetical protein DNJ-12; HSP40, J-domain, chap 99.62
2qwo_B92 Putative tyrosine-protein phosphatase auxilin; cha 99.6
1bq0_A103 DNAJ, HSP40; chaperone, heat shock, protein foldin 99.6
2o37_A92 Protein SIS1; HSP40, J-domain, cochaperone, APC900 99.59
2qsa_A109 DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s 99.58
2l6l_A155 DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, 99.58
1faf_A79 Large T antigen; J domain, HPD motif, anti-paralle 99.58
2guz_A71 Mitochondrial import inner membrane translocase su 99.57
3ag7_A106 Putative uncharacterized protein F9E10.5; J-domain 99.56
3apq_A 210 DNAJ homolog subfamily C member 10; thioredoxin fo 99.55
3hho_A 174 CO-chaperone protein HSCB homolog; structural geno 99.53
1n4c_A182 Auxilin; four helix bundle, protein binding; NMR { 99.52
1gh6_A114 Large T antigen; tumor suppressor, oncoprotein, an 99.51
1fpo_A 171 HSC20, chaperone protein HSCB; molecular chaperone 99.51
3bvo_A207 CO-chaperone protein HSCB, mitochondrial precurso; 99.49
3lz8_A 329 Putative chaperone DNAJ; structure genomics, struc 99.48
2pf4_E 174 Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, 99.39
3uo3_A 181 J-type CO-chaperone JAC1, mitochondrial; structura 99.33
3apo_A 780 DNAJ homolog subfamily C member 10; PDI family, th 99.22
2guz_B65 Mitochondrial import inner membrane translocase su 98.86
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 98.71
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 83.71
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
Probab=99.69  E-value=1.2e-17  Score=126.62  Aligned_cols=60  Identities=32%  Similarity=0.494  Sum_probs=55.1

Q ss_pred             CccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhcccCC
Q 026520          173 GSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  237 (237)
Q Consensus       173 ~~~d~Y~VLGL~~~a~~s~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFq~I~eAYevLsDp~k  237 (237)
                      ...++|+||||++++  +.++||+|||+|+++||||+++..   .++++|+.|++||++|+||.+
T Consensus        25 ~~~~~y~iLgv~~~a--s~~eIk~aYr~la~~~HPDk~~~~---~~~~~f~~i~~Ay~~L~d~~~   84 (90)
T 2ys8_A           25 NSKDSWDMLGVKPGA--SRDEVNKAYRKLAVLLHPDKCVAP---GSEDAFKAVVNARTALLKNIK   84 (90)
T ss_dssp             TCSSHHHHHTCCTTC--CHHHHHHHHHHHHHHHCTTTCCCT---THHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCcCCCCCc---cHHHHHHHHHHHHHHHCCccc
Confidence            347999999999999  999999999999999999999864   588999999999999999853
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Back     alignment and structure
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Back     alignment and structure
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Back     alignment and structure
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Back     alignment and structure
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Back     alignment and structure
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Back     alignment and structure
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Back     alignment and structure
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Back     alignment and structure
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Back     alignment and structure
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Back     alignment and structure
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Back     alignment and structure
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Back     alignment and structure
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Back     alignment and structure
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Back     alignment and structure
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Back     alignment and structure
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Back     alignment and structure
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Back     alignment and structure
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Back     alignment and structure
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 237
d1fpoa176 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma 1e-04
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76 Back     information, alignment and structure

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 37.3 bits (86), Expect = 1e-04
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 180 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAE---EKFKLCLNAYKSL 232
           + GLP    L    +   F+    ++HPDK    SQA      ++      A+++L
Sbjct: 6   LFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query237
d1xbla_75 DnaJ chaperone, N-terminal (J) domain {Escherichia 99.73
d1wjza_94 CSL-type zinc finger-containing protein 3 (J-domai 99.68
d1gh6a_114 Large T antigen, the N-terminal J domain {Simian v 99.65
d1hdja_77 HSP40 {Human (Homo sapiens) [TaxId: 9606]} 99.62
d1fpoa176 HSC20 (HSCB), N-terminal (J) domain {Escherichia c 99.61
d1fafa_79 Large T antigen, the N-terminal J domain {Murine p 99.59
d1iura_88 Hypothetical protein KIAA0730 {Human (Homo sapiens 99.57
d1nz6a_98 Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} 99.51
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=2.8e-18  Score=124.98  Aligned_cols=59  Identities=32%  Similarity=0.549  Sum_probs=54.9

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhcccC
Q 026520          174 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  236 (237)
Q Consensus       174 ~~d~Y~VLGL~~~a~~s~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFq~I~eAYevLsDp~  236 (237)
                      ..|||+||||++++  +.++||+|||+|++++|||++++.  +.+++.|+.|++||+||+||.
T Consensus         2 k~dyY~vLgv~~~A--s~~eIk~aYr~l~~~~HPDk~~~~--~~~~~~f~~i~~Ay~vL~d~~   60 (75)
T d1xbla_           2 KQDYYEILGVSKTA--EEREIRKAYKRLAMKYHPDRNQGD--KEAEAKFKEIKEAYEVLTDSQ   60 (75)
T ss_dssp             CCCTTTTTCCSSSC--CHHHHHHHHHHHHHHTCCTTCTTT--CHHHHHHHHHHHHHHHTTSSH
T ss_pred             CCCHHHHcCCCCCc--CHHHHHHHHHHHHhhhhhhccCCC--hHHHHHHHHHHHHHHhcCCHH
Confidence            36999999999999  999999999999999999999875  468889999999999999985
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Back     information, alignment and structure
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Back     information, alignment and structure
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure