Citrus Sinensis ID: 026558
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 237 | 2.2.26 [Sep-21-2011] | |||||||
| A5PK19 | 699 | Methyltransferase-like pr | yes | no | 0.641 | 0.217 | 0.386 | 6e-25 | |
| Q8N6R0 | 699 | Methyltransferase-like pr | no | no | 0.641 | 0.217 | 0.379 | 2e-24 | |
| Q91YR5 | 698 | Methyltransferase-like pr | no | no | 0.641 | 0.217 | 0.360 | 3e-23 | |
| O60344 | 883 | Endothelin-converting enz | no | no | 0.502 | 0.134 | 0.447 | 1e-22 | |
| Q80Z60 | 881 | Endothelin-converting enz | no | no | 0.497 | 0.133 | 0.434 | 7e-22 | |
| Q10711 | 883 | Endothelin-converting enz | no | no | 0.468 | 0.125 | 0.435 | 3e-21 | |
| A5WVX1 | 690 | Methyltransferase-like pr | no | no | 0.725 | 0.249 | 0.327 | 2e-20 | |
| Q6NTR1 | 693 | Methyltransferase-like pr | N/A | no | 0.679 | 0.232 | 0.304 | 2e-19 | |
| Q9VIK9 | 673 | Methyltransferase-like pr | yes | no | 0.628 | 0.221 | 0.331 | 6e-19 | |
| Q29LW1 | 673 | Methyltransferase-like pr | yes | no | 0.628 | 0.221 | 0.337 | 8e-18 |
| >sp|A5PK19|MET13_BOVIN Methyltransferase-like protein 13 OS=Bos taurus GN=METTL13 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 114 bits (285), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 96/158 (60%), Gaps = 6/158 (3%)
Query: 6 TTQAYGEPWYWDNRYAHESG-PFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEG 64
+++ +G YW+ + F+WY Y L ++ Y+ +++L+VGCGNS SE
Sbjct: 7 SSKEFGSVDYWEKFFQQRGKKAFEWYGTYLELCGVLHKYIKPR-EKVLVVGCGNSELSEQ 65
Query: 65 MVDDGYEDVVNVDISSVVIEAMMKK-YSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123
+ D GY+D+VN+DIS VVI+ M ++ S RP++ ++KMD+ QM EF SF V+DKGTL
Sbjct: 66 LYDVGYQDIVNIDISEVVIKQMKERNASRRPRMSFLKMDMTQM-EFPDASFQVVLDKGTL 124
Query: 124 DSLLCGSNSR--QNATQMLKEVWRVLKDKGVYILVTYG 159
D++L + Q +ML EV RVL+ G Y+ ++
Sbjct: 125 DAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLA 162
|
Bos taurus (taxid: 9913) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q8N6R0|MET13_HUMAN Methyltransferase-like protein 13 OS=Homo sapiens GN=METTL13 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 94/158 (59%), Gaps = 6/158 (3%)
Query: 6 TTQAYGEPWYWDNRYAHESG-PFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEG 64
+++ +G YW+ + F+WY Y L ++ Y+ +++L++GCGNS SE
Sbjct: 7 SSREFGSVDYWEKFFQQRGKKAFEWYGTYLELCGVLHKYIKPR-EKVLVIGCGNSELSEQ 65
Query: 65 MVDDGYEDVVNVDISSVVIEAMMK-KYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123
+ D GY D+VN+DIS VVI+ M + + RPQ+ ++KMD+ QM EF SF V+DKGTL
Sbjct: 66 LYDVGYRDIVNIDISEVVIKQMKECNATRRPQMSFLKMDMTQM-EFPDASFQVVLDKGTL 124
Query: 124 DSLLCGSNSR--QNATQMLKEVWRVLKDKGVYILVTYG 159
D++L + Q +ML EV RVL+ G Y+ ++
Sbjct: 125 DAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLA 162
|
Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q91YR5|MET13_MOUSE Methyltransferase-like protein 13 OS=Mus musculus GN=Mettl13 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 95/158 (60%), Gaps = 6/158 (3%)
Query: 6 TTQAYGEPWYWDNRYAHESG-PFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEG 64
+++ +G YW+ + F+WY Y L ++ Y+ +++L++GCGNS SE
Sbjct: 7 SSKEFGSADYWEKFFQQRGKTAFEWYGTYLELCEVLHKYIKPK-EKVLVIGCGNSELSEQ 65
Query: 65 MVDDGYEDVVNVDISSVVIEAMMKKY-SNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123
+ D GY+D+VN+DIS VVI+ M ++ S RP + ++KMD+ Q+ EF +F V+DKGTL
Sbjct: 66 LYDVGYQDIVNIDISEVVIKQMKERNGSRRPHMSFLKMDMTQL-EFPDATFQVVLDKGTL 124
Query: 124 DSLLCGSN--SRQNATQMLKEVWRVLKDKGVYILVTYG 159
D++L + + +ML EV RVL+ G Y+ ++
Sbjct: 125 DAVLTDEEEVTLRQVDRMLAEVGRVLQVGGRYLCISLA 162
|
Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O60344|ECE2_HUMAN Endothelin-converting enzyme 2 OS=Homo sapiens GN=ECE2 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 81/123 (65%), Gaps = 4/123 (3%)
Query: 9 AYGEPWYWDNRY--AHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMV 66
Y E YWD RY A +S P+DW+ + S L++ + RIL++GCGNSA S +
Sbjct: 19 GYREVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPEL-RPEDRILVLGCGNSALSYELF 77
Query: 67 DDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126
G+ +V +VD SSVV+ AM ++++ PQL++ MDVR++D F + SFD V++KGTLD+L
Sbjct: 78 LGGFPNVTSVDYSSVVVAAMQARHAHVPQLRWETMDVRKLD-FPSASFDVVLEKGTLDAL 136
Query: 127 LCG 129
L G
Sbjct: 137 LAG 139
|
Converts big endothelin-1 to endothelin-1. Also involved in the processing of various neuroendocrine peptides, including neurotensin, angiotensin I, substance P, proenkephalin-derived peptides, and prodynorphin-derived peptides. May limit beta-amyloid peptide accumulation in brain. May also have methyltransferase activity. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 4 EC: . EC: 7 EC: 1 |
| >sp|Q80Z60|ECE2_MOUSE Endothelin-converting enzyme 2 OS=Mus musculus GN=Ece2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 103 bits (258), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 80/122 (65%), Gaps = 4/122 (3%)
Query: 10 YGEPWYWDNRY--AHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVD 67
Y + YWD RY A +SGP++W+ + S L++ + RIL++GCGNSA S +
Sbjct: 20 YRQVQYWDQRYKDAADSGPYEWFGDFASFRALLEPEL-CPEDRILVLGCGNSALSYELFL 78
Query: 68 DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127
G+ +V +VD S VV+ AM +Y++ P L++ MDVR +D F +GSFD V++KGTLD++L
Sbjct: 79 GGFPNVTSVDYSPVVVAAMQVRYAHVPSLRWETMDVRALD-FPSGSFDVVLEKGTLDAML 137
Query: 128 CG 129
G
Sbjct: 138 AG 139
|
Converts big endothelin-1 to endothelin-1. Also involved in the processing of various neuroendocrine peptides, including neurotensin, angiotensin I, substance P, proenkephalin-derived peptides, and prodynorphin-derived peptides. May limit beta-amyloid peptide accumulation in brain. May also have methyltransferase activity. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 4 EC: . EC: 7 EC: 1 |
| >sp|Q10711|ECE2_BOVIN Endothelin-converting enzyme 2 OS=Bos taurus GN=ECE2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 78/131 (59%), Gaps = 20/131 (15%)
Query: 9 AYGEPWYWDNRY--AHESGPFDWYQKY--------PSLAPLIKLYVPSHHQRILIVGCGN 58
Y E YWD RY A +S P++W+ + P L PL RIL++GCGN
Sbjct: 19 GYREVQYWDQRYQGAADSAPYEWFGDFSCFRDLLEPELRPL---------DRILVLGCGN 69
Query: 59 SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVV 118
SA S + G+ DV +VD SSVV+ AM +Y++ P L++ MDVR + F +GSFD V+
Sbjct: 70 SALSYELFLGGFPDVTSVDYSSVVVAAMRARYAHVPTLRWETMDVRALG-FPSGSFDVVL 128
Query: 119 DKGTLDSLLCG 129
+KGTLD+LL G
Sbjct: 129 EKGTLDALLTG 139
|
Converts big endothelin-1 to endothelin-1. Also involved in the processing of various neuroendocrine peptides, including neurotensin, angiotensin I, substance P, proenkephalin-derived peptides, and prodynorphin-derived peptides. May limit beta-amyloid peptide accumulation in brain. May also have methyltransferase activity. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 4 EC: . EC: 7 EC: 1 |
| >sp|A5WVX1|MET13_DANRE Methyltransferase-like protein 13 OS=Danio rerio GN=mettl13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 97/180 (53%), Gaps = 8/180 (4%)
Query: 6 TTQAYGEPWYWDNRYAHESG--PFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSE 63
T + + YW+ R+ + G F+WY Y SL ++ Y+ ++L+VGCGNS SE
Sbjct: 7 TAEEFSSADYWE-RFFRKRGEKAFEWYGDYNSLCGVLHKYIKPR-DKVLVVGCGNSELSE 64
Query: 64 GMVDDGYEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122
+ D GY + N+DIS V+ M ++ + RP L + ++D Q F++GSF +DKGT
Sbjct: 65 QLYDVGYRQLTNIDISETVVSHMNQRNAERRPDLSFQQLDATQTG-FESGSFQVTLDKGT 123
Query: 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP-IYRLGMLRDSCSWNIKLHVI 181
LD++ + A +ML EV RVL G Y+ +T + +L + W +++H +
Sbjct: 124 LDAMASEEDGAL-AGRMLAEVGRVLAVGGRYVCITLAQEHVIKLAVEHFVKGWAVRVHCL 182
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Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q6NTR1|MET13_XENLA Methyltransferase-like protein 13 OS=Xenopus laevis GN=mettl13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 96/184 (52%), Gaps = 23/184 (12%)
Query: 6 TTQAYGEPWYWDNRYAHES-GPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEG 64
+++ + P YW+ + F+WY Y L L+ Y+ ++ +VGCGNS SE
Sbjct: 7 SSKEFAAPEYWEQFFRRRGERAFEWYGGYLELCGLLHKYIKPR-DKVFVVGCGNSELSEQ 65
Query: 65 MVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123
+ D G +++ N+D+S VVI M ++ SN RP + + MD Q F F +V+DKGTL
Sbjct: 66 LYDAGCQNLTNIDVSEVVIRQMNERNSNRRPNMTFQVMDATQTT-FDDSCFQAVLDKGTL 124
Query: 124 DSLLCGSN--SRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVI 181
D+++ ++ + + A +++ E+ RVL G ++ V+ + HV+
Sbjct: 125 DAIMTDTDKGTLETADKLMSEIGRVLTCGGRFLCVSLA-----------------QAHVL 167
Query: 182 EKLV 185
EKLV
Sbjct: 168 EKLV 171
|
Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9VIK9|MET13_DROME Methyltransferase-like protein 13 OS=Drosophila melanogaster GN=CG2614 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 94.4 bits (233), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 86/157 (54%), Gaps = 8/157 (5%)
Query: 6 TTQAYGEPWYWDNRYAHESG--PFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSE 63
T + + + YW N + + G F+WY +Y L I Y+ RIL++GCGNS S
Sbjct: 7 TREEFAQTDYW-NEFFKKRGEKAFEWYGEYLELCDQIHKYIKPA-DRILMLGCGNSKLSM 64
Query: 64 GMVDDGYEDVVNVDISSVVIEAMMK-KYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122
M D G+ D+ N+DIS + ++ M++ +RP++K+++MD M F SF +DKGT
Sbjct: 65 DMYDTGFRDITNIDISPIAVKKMLELNAKSRPEMKFLQMDATAM-TFPDESFSVSLDKGT 123
Query: 123 LDSLLCGS--NSRQNATQMLKEVWRVLKDKGVYILVT 157
LD+L +R KE+ R +++ G Y+ ++
Sbjct: 124 LDALFADDEPETRAVVENYFKEILRTMRNGGRYVGIS 160
|
Drosophila melanogaster (taxid: 7227) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q29LW1|MTE13_DROPS Methyltransferase-like protein 13 OS=Drosophila pseudoobscura pseudoobscura GN=GA15401 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 90.9 bits (224), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 83/157 (52%), Gaps = 8/157 (5%)
Query: 6 TTQAYGEPWYWDNRYAHESG--PFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSE 63
T + + + YW N + + G F+WY +Y L I Y+ +IL++GCGNS S
Sbjct: 7 TREEFAQTDYW-NEFFKKRGEKAFEWYGEYLDLCDHIHKYIKPV-DKILMLGCGNSKLSM 64
Query: 64 GMVDDGYEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122
M D Y D+ N+DIS V ++ M+++ + RP +K+++MD M F SF +DKGT
Sbjct: 65 DMYDSEYRDITNIDISPVAVKKMLEQNARTRPDMKFLQMDATAM-TFPDESFSVALDKGT 123
Query: 123 LDSLLCGSNSRQNAT--QMLKEVWRVLKDKGVYILVT 157
LD+L A KE+ R +++ G Y V+
Sbjct: 124 LDALFVDDAPETKAVVENYFKEILRTMRNGGRYFCVS 160
|
Drosophila pseudoobscura pseudoobscura (taxid: 46245) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 237 | ||||||
| 255556536 | 243 | S-adenosylmethionine-dependent methyltra | 1.0 | 0.975 | 0.794 | 1e-111 | |
| 224112064 | 241 | predicted protein [Populus trichocarpa] | 0.991 | 0.975 | 0.775 | 1e-106 | |
| 225432153 | 230 | PREDICTED: S-adenosyl-L-methionine-depen | 0.970 | 1.0 | 0.753 | 1e-102 | |
| 388515731 | 233 | unknown [Lotus japonicus] | 0.962 | 0.978 | 0.760 | 1e-101 | |
| 297834650 | 239 | hypothetical protein ARALYDRAFT_898077 [ | 0.983 | 0.974 | 0.712 | 1e-98 | |
| 357449219 | 236 | Methyltransferase-like protein [Medicago | 0.987 | 0.991 | 0.720 | 2e-97 | |
| 18401485 | 239 | S-adenosyl-L-methionine-dependent methyl | 0.983 | 0.974 | 0.703 | 2e-97 | |
| 356556153 | 236 | PREDICTED: methyltransferase-like protei | 0.983 | 0.987 | 0.706 | 2e-97 | |
| 388519797 | 236 | unknown [Medicago truncatula] | 0.987 | 0.991 | 0.716 | 4e-97 | |
| 449459778 | 241 | PREDICTED: methyltransferase-like protei | 0.991 | 0.975 | 0.713 | 8e-96 |
| >gi|255556536|ref|XP_002519302.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223541617|gb|EEF43166.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust.
Identities = 189/238 (79%), Positives = 212/238 (89%), Gaps = 1/238 (0%)
Query: 1 MTMGTTTQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQ-RILIVGCGNS 59
MTMGT+TQAYGE WYWDNRYA+ESGPFDWYQKY SLAPLI LY+P HH RIL+VGCGNS
Sbjct: 1 MTMGTSTQAYGESWYWDNRYANESGPFDWYQKYSSLAPLINLYIPRHHHPRILVVGCGNS 60
Query: 60 AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVD 119
AFS+GMVDDGY+DVVN+DISSVVIEAM KYSNRPQLKYI+MDVR+M FQTGSFD+V+D
Sbjct: 61 AFSDGMVDDGYDDVVNIDISSVVIEAMNNKYSNRPQLKYIQMDVREMSAFQTGSFDAVID 120
Query: 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLH 179
KGTLDS+LCG+NSRQNAT ML++VWRVLKDKGVYILVTYGAP+YRL +L++SC W IKLH
Sbjct: 121 KGTLDSILCGNNSRQNATLMLEDVWRVLKDKGVYILVTYGAPVYRLCLLKESCLWTIKLH 180
Query: 180 VIEKLVVEEKSGHPIWELTNPVPLENDGRSVEELLGKNPDVHYIYVCTKDESLKTSSK 237
VIEKL+ S HP+WELTNPVPL +DG SVE LGKNPDVHYIY+CTKDESLK K
Sbjct: 181 VIEKLLSGGDSEHPVWELTNPVPLNDDGSSVEAALGKNPDVHYIYICTKDESLKAGQK 238
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224112064|ref|XP_002316072.1| predicted protein [Populus trichocarpa] gi|222865112|gb|EEF02243.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust.
Identities = 183/236 (77%), Positives = 208/236 (88%), Gaps = 1/236 (0%)
Query: 3 MGTTTQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSH-HQRILIVGCGNSAF 61
MGT+TQAYGEPWYWDNRY+ ESGPFDWYQKYPSLAPLI LY+P H H RIL+VGCGNSAF
Sbjct: 1 MGTSTQAYGEPWYWDNRYSSESGPFDWYQKYPSLAPLINLYIPRHVHPRILVVGCGNSAF 60
Query: 62 SEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121
SEGMV DGYEDVVN+DISSVVIEAM KKYSN PQLKYI MDVR M EFQ+GSF++V+DKG
Sbjct: 61 SEGMVSDGYEDVVNIDISSVVIEAMKKKYSNHPQLKYIGMDVRDMSEFQSGSFNAVIDKG 120
Query: 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVI 181
TLDS+LCG++SR+NA +MLKEVWRVLKD GVYILVTYGAP+YRL +L DSCSW IKLHVI
Sbjct: 121 TLDSILCGNDSRKNAPKMLKEVWRVLKDNGVYILVTYGAPLYRLQLLGDSCSWRIKLHVI 180
Query: 182 EKLVVEEKSGHPIWELTNPVPLENDGRSVEELLGKNPDVHYIYVCTKDESLKTSSK 237
+KL+ +E S HP+ EL NPV ++++G SVE +LGKNPDVHYIYVCTKDESL K
Sbjct: 181 DKLLSDEGSEHPVQELMNPVSIDDNGSSVEAVLGKNPDVHYIYVCTKDESLTPEQK 236
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225432153|ref|XP_002265997.1| PREDICTED: S-adenosyl-L-methionine-dependent methyltransferase-like [Vitis vinifera] gi|297736798|emb|CBI25999.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 174/231 (75%), Positives = 204/231 (88%), Gaps = 1/231 (0%)
Query: 1 MTMGTTTQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSA 60
M MG T QAYGEP YWD RY+HESGPFDWYQKY +LAPL+ LY+P HH R+L+VGCGNSA
Sbjct: 1 MRMGRTMQAYGEPSYWDERYSHESGPFDWYQKYNALAPLLHLYIPLHH-RVLVVGCGNSA 59
Query: 61 FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDK 120
FSEGMV+DGY++VVN+DISSVVI+AM +KYS+RPQLKYI+MDV M FQTGSFD+VVDK
Sbjct: 60 FSEGMVNDGYKEVVNIDISSVVIQAMQRKYSDRPQLKYIRMDVLDMSGFQTGSFDAVVDK 119
Query: 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHV 180
GTLDSLLCG+NSRQ A +MLKEV RVLK+KGVY+L+TYGAPIYRL +LRDSCSW IKLHV
Sbjct: 120 GTLDSLLCGNNSRQLAVKMLKEVERVLKNKGVYMLITYGAPIYRLRLLRDSCSWTIKLHV 179
Query: 181 IEKLVVEEKSGHPIWELTNPVPLENDGRSVEELLGKNPDVHYIYVCTKDES 231
IEK ++E K+ H WELTNPVPL+++G SVE +LGKNPDVHYIY+C KD+S
Sbjct: 180 IEKFMLEAKTEHQTWELTNPVPLDDEGSSVEAVLGKNPDVHYIYICIKDDS 230
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388515731|gb|AFK45927.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/230 (76%), Positives = 200/230 (86%), Gaps = 2/230 (0%)
Query: 3 MGTTTQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFS 62
M T TQAYGE WYWDNRY +E GPFDWYQKY +LAP+I LYVP +H IL+VG GNSAFS
Sbjct: 1 MATGTQAYGESWYWDNRYTNEPGPFDWYQKYITLAPIINLYVPQNHS-ILVVGSGNSAFS 59
Query: 63 EGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121
EG+VD+G Y DVVNVDISSVVIEAM KY +RPQLKY+KMDVR M F++GSF SV+DKG
Sbjct: 60 EGLVDEGGYSDVVNVDISSVVIEAMQNKYKDRPQLKYVKMDVRDMSAFESGSFGSVIDKG 119
Query: 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVI 181
TLDS+LCGSNSRQNAT+ML+EVWRVLKDKGVYILVTYGAP+YRL +L++SCSW+IKLHVI
Sbjct: 120 TLDSILCGSNSRQNATEMLEEVWRVLKDKGVYILVTYGAPLYRLRLLKESCSWSIKLHVI 179
Query: 182 EKLVVEEKSGHPIWELTNPVPLENDGRSVEELLGKNPDVHYIYVCTKDES 231
EKL EEKS HP+WELT PVPL +DG SVEE LG+N DVHYIY+CTK+ S
Sbjct: 180 EKLASEEKSDHPLWELTKPVPLNDDGSSVEEALGRNADVHYIYICTKESS 229
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297834650|ref|XP_002885207.1| hypothetical protein ARALYDRAFT_898077 [Arabidopsis lyrata subsp. lyrata] gi|297331047|gb|EFH61466.1| hypothetical protein ARALYDRAFT_898077 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 364 bits (935), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 166/233 (71%), Positives = 196/233 (84%)
Query: 1 MTMGTTTQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSA 60
M T+TQ+Y E WYWD RY +ES PFDWYQKY SLAPLI LYVP +QR L++GCGNSA
Sbjct: 1 MATETSTQSYSEKWYWDERYTNESEPFDWYQKYSSLAPLINLYVPHRNQRALVIGCGNSA 60
Query: 61 FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDK 120
FSEGMVDDGYEDVVN+DISSVVI+ M+KKYS+RPQLKY+KMDVR M F+ SFD+V+DK
Sbjct: 61 FSEGMVDDGYEDVVNIDISSVVIDTMIKKYSDRPQLKYLKMDVRDMKAFEDASFDAVIDK 120
Query: 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHV 180
GTLDS+LCGSNSRQ +TQML+EVWRVLKDKGVYIL+TYGAPIYRL + ++SCSW KLHV
Sbjct: 121 GTLDSILCGSNSRQYSTQMLEEVWRVLKDKGVYILITYGAPIYRLRLFKESCSWTTKLHV 180
Query: 181 IEKLVVEEKSGHPIWELTNPVPLENDGRSVEELLGKNPDVHYIYVCTKDESLK 233
I+K + ++ P WELT P+PL+ +G SVE +GK+PDVHYIYVC KDESLK
Sbjct: 181 IDKSLTDQPLETPKWELTKPLPLDAEGSSVESAIGKSPDVHYIYVCIKDESLK 233
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357449219|ref|XP_003594886.1| Methyltransferase-like protein [Medicago truncatula] gi|355483934|gb|AES65137.1| Methyltransferase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 170/236 (72%), Positives = 201/236 (85%), Gaps = 2/236 (0%)
Query: 3 MGTTTQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFS 62
M T TQAYGE WYWDNRY +E GPFDWYQKY +LAP+I LYVP +Q IL+VG GNSAFS
Sbjct: 1 MATGTQAYGESWYWDNRYTNEPGPFDWYQKYITLAPIINLYVP-KNQSILVVGSGNSAFS 59
Query: 63 EGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121
+GMVD+ GY+DVVN+DISSVVI+AM KKY +RPQLKY+KMDVR M F + +F SV+DKG
Sbjct: 60 QGMVDEGGYKDVVNIDISSVVIDAMQKKYRDRPQLKYLKMDVRDMSAFASETFGSVIDKG 119
Query: 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVI 181
TLDS+LCG+NSRQ+AT+ML+E+WRVLK KGVYILVTYGAP+YRL +LRDSCSW IKLHVI
Sbjct: 120 TLDSILCGNNSRQHATKMLEEIWRVLKAKGVYILVTYGAPLYRLRLLRDSCSWTIKLHVI 179
Query: 182 EKLVVEEKSGHPIWELTNPVPLENDGRSVEELLGKNPDVHYIYVCTKDESLKTSSK 237
EKL EEKS +P+WELT P+PL NDG SV+E LG NPDVHYIY+CTK+ S ++ K
Sbjct: 180 EKLASEEKSVNPLWELTKPIPLNNDGSSVDETLGLNPDVHYIYICTKEISANSNVK 235
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18401485|ref|NP_566574.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|15293079|gb|AAK93650.1| unknown protein [Arabidopsis thaliana] gi|21689773|gb|AAM67530.1| unknown protein [Arabidopsis thaliana] gi|332642423|gb|AEE75944.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 164/233 (70%), Positives = 194/233 (83%)
Query: 1 MTMGTTTQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSA 60
M TQ+Y E WYWD+RY +ES PFDWYQKY LAPLI LYVP +QR+L++GCGNSA
Sbjct: 1 MATEAPTQSYSEQWYWDDRYKNESEPFDWYQKYSPLAPLINLYVPQRNQRVLVIGCGNSA 60
Query: 61 FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDK 120
FSEGMVDDGYEDVV++DISSVVI+ M+KKYS+RPQLKY+KMDVR M F+ SFD+V+DK
Sbjct: 61 FSEGMVDDGYEDVVSIDISSVVIDTMIKKYSDRPQLKYLKMDVRDMKAFEDASFDAVIDK 120
Query: 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHV 180
GTLDS+LCGSNSRQ +TQML+EVWRVLKDKGVYIL+TYGAPIYRL + ++SCSW KLHV
Sbjct: 121 GTLDSILCGSNSRQYSTQMLEEVWRVLKDKGVYILITYGAPIYRLRLFKESCSWTTKLHV 180
Query: 181 IEKLVVEEKSGHPIWELTNPVPLENDGRSVEELLGKNPDVHYIYVCTKDESLK 233
I+K + ++ P WELT P+PL+ DG SVE +GKNPDVHYIYVC KDES K
Sbjct: 181 IDKSLTDQPLDTPKWELTKPLPLDADGSSVESAIGKNPDVHYIYVCIKDESSK 233
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356556153|ref|XP_003546391.1| PREDICTED: methyltransferase-like protein 13-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 166/235 (70%), Positives = 203/235 (86%), Gaps = 2/235 (0%)
Query: 3 MGTTTQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFS 62
M T+TQAYGEPWYWDNRY++E GPFDWYQKY +LAP+ LYVP Q +L+VGCGNSAFS
Sbjct: 1 MTTSTQAYGEPWYWDNRYSNEPGPFDWYQKYLTLAPITNLYVPPA-QPVLVVGCGNSAFS 59
Query: 63 EGMV-DDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121
EGMV D GY DVVN+DISSVVI+AM K+ + P+LK++KMD R M +F++GSF +V+DKG
Sbjct: 60 EGMVVDGGYTDVVNIDISSVVIKAMKTKHQDCPKLKFMKMDARDMSDFESGSFGAVIDKG 119
Query: 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVI 181
TLDS+LCG+NSRQNAT+ML+E+WRVLKDKGVY+LVTYGAP+YRL +LR+SCSW IKLHVI
Sbjct: 120 TLDSILCGNNSRQNATKMLEEIWRVLKDKGVYVLVTYGAPLYRLRLLRESCSWTIKLHVI 179
Query: 182 EKLVVEEKSGHPIWELTNPVPLENDGRSVEELLGKNPDVHYIYVCTKDESLKTSS 236
EKL EEKS +P+WELT PVPL +DG SVEE LG+NPDVHYIY+CTK+ S +++
Sbjct: 180 EKLASEEKSDNPVWELTKPVPLNDDGSSVEEALGQNPDVHYIYICTKEVSANSNT 234
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388519797|gb|AFK47960.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 360 bits (923), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 169/236 (71%), Positives = 201/236 (85%), Gaps = 2/236 (0%)
Query: 3 MGTTTQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFS 62
M T TQAYGE WYWDNRY +E GPFDWYQKY +LAP+I LYVP +Q IL+VG GNSAFS
Sbjct: 1 MATGTQAYGESWYWDNRYTNEPGPFDWYQKYITLAPIINLYVP-KNQSILVVGSGNSAFS 59
Query: 63 EGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121
+GMVD+ GY+DVVN+DISSVVI+AM KKY +RPQLKY+KMDVR M F + +F SV+DKG
Sbjct: 60 QGMVDEGGYKDVVNIDISSVVIDAMQKKYRDRPQLKYLKMDVRDMSAFASETFGSVIDKG 119
Query: 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVI 181
TLDS+LCG+NSRQ+AT+ML+E+WRVLK KGVYILVTYGAP+YRL +LRDSCSW IKLHVI
Sbjct: 120 TLDSILCGNNSRQHATKMLEEIWRVLKAKGVYILVTYGAPLYRLRLLRDSCSWTIKLHVI 179
Query: 182 EKLVVEEKSGHPIWELTNPVPLENDGRSVEELLGKNPDVHYIYVCTKDESLKTSSK 237
EKL EEKS +P+WELT P+PL NDG SV+E LG NPDVHYIY+CTK+ S ++ +
Sbjct: 180 EKLASEEKSVNPLWELTKPIPLNNDGSSVDETLGLNPDVHYIYICTKEISANSNVR 235
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459778|ref|XP_004147623.1| PREDICTED: methyltransferase-like protein 13-like [Cucumis sativus] gi|449514771|ref|XP_004164476.1| PREDICTED: methyltransferase-like protein 13-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 355 bits (911), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 169/237 (71%), Positives = 197/237 (83%), Gaps = 2/237 (0%)
Query: 1 MTMGTTTQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSA 60
M T TQAYGEP YWDNRY++ESGPFDWYQKY SLAPL+ LYV HH R L VGCGNSA
Sbjct: 1 MATETCTQAYGEPSYWDNRYSNESGPFDWYQKYHSLAPLVNLYVSRHH-RTLAVGCGNSA 59
Query: 61 FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDK 120
FSEGMVDDGYEDVVNVDISSVVIEAM KKY N PQLKY+KMDVR M F+T SF +V+DK
Sbjct: 60 FSEGMVDDGYEDVVNVDISSVVIEAMQKKYCNLPQLKYVKMDVRDMSTFETCSFHAVLDK 119
Query: 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHV 180
GTLDSLLCG+NSR+NAT+ML+EVWRVLK+ GVYILVTYGAP YRL +L+ + S IKLHV
Sbjct: 120 GTLDSLLCGNNSRENATRMLEEVWRVLKENGVYILVTYGAPTYRLSLLKRTFSL-IKLHV 178
Query: 181 IEKLVVEEKSGHPIWELTNPVPLENDGRSVEELLGKNPDVHYIYVCTKDESLKTSSK 237
I+K V E+++ P W+L PVP +ND R++E +LG+NPD+HY+Y+CTKD SLKT K
Sbjct: 179 IDKFVSEKRTDPPKWDLLKPVPFDNDVRTLETMLGQNPDIHYVYICTKDSSLKTDEK 235
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 237 | ||||||
| TAIR|locus:2101861 | 252 | AT3G60910 "AT3G60910" [Arabido | 0.940 | 0.884 | 0.416 | 9.1e-45 | |
| DICTYBASE|DDB_G0282393 | 232 | DDB_G0282393 "Methyltransferas | 0.717 | 0.732 | 0.371 | 2.3e-29 | |
| UNIPROTKB|D4ADU7 | 255 | LOC100363561 "Protein LOC10036 | 0.700 | 0.650 | 0.346 | 3.4e-22 | |
| UNIPROTKB|F1PUB6 | 255 | ECE2 "Uncharacterized protein" | 0.649 | 0.603 | 0.373 | 4.3e-22 | |
| ZFIN|ZDB-GENE-070912-214 | 260 | si:ch211-224b1.4 "si:ch211-224 | 0.696 | 0.634 | 0.333 | 4.7e-22 | |
| UNIPROTKB|G3N1Q4 | 255 | ECE2 "Endothelin-converting en | 0.645 | 0.6 | 0.363 | 1.2e-19 | |
| UNIPROTKB|F1S7S8 | 699 | METTL13 "Uncharacterized prote | 0.729 | 0.247 | 0.316 | 3.9e-19 | |
| UNIPROTKB|F1PCU5 | 608 | F1PCU5 "Uncharacterized protei | 0.713 | 0.277 | 0.324 | 4.9e-19 | |
| UNIPROTKB|F1PDJ6 | 699 | METTL13 "Uncharacterized prote | 0.713 | 0.241 | 0.324 | 6.4e-19 | |
| UNIPROTKB|A5PK19 | 699 | METTL13 "Methyltransferase-lik | 0.729 | 0.247 | 0.311 | 1.3e-18 |
| TAIR|locus:2101861 AT3G60910 "AT3G60910" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 95/228 (41%), Positives = 137/228 (60%)
Query: 7 TQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMV 66
T YG+ YWD RY ++ FDWYQ Y SL P ++ +V S R+L+VGCGNS SE MV
Sbjct: 10 TYNYGDALYWDARYVQDALSFDWYQCYSSLRPFVRSFV-STSSRVLMVGCGNSLMSEDMV 68
Query: 67 DDGYXXXXXXXXXXXXXXAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126
DGY M KY++ PQLKY++MDVR M F+ SFD+++DKGTLDSL
Sbjct: 69 KDGYEDIMNVDISSVAIEMMQTKYASVPQLKYMQMDVRDMSYFEDDSFDTIIDKGTLDSL 128
Query: 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGML-RDSCSWNIKLHVIEKLV 185
+CGS++ +A++ML EV R++K G Y L+TYG P R+ L R + +W I L++I +
Sbjct: 129 MCGSDALLSASRMLGEVSRLIKPGGTYFLITYGDPKVRMPHLTRSAYNWKISLYIIPRPG 188
Query: 186 VE--EKSGHPIWELTNPVPLENDGRSVEELLGKNPDVHYIYVCTK-DE 230
+ E +P+ ++G + + ++PD H+IY+C K DE
Sbjct: 189 FKRPESCSSSAKSCMEAIPITSEGMLPHDYVLEDPDSHFIYICKKKDE 236
|
|
| DICTYBASE|DDB_G0282393 DDB_G0282393 "Methyltransferase-like protein 12, mitochondrial" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 296 (109.3 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 65/175 (37%), Positives = 95/175 (54%)
Query: 10 YGEPWYWDNRYAHES--GPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVD 67
YG YWD+RY + + FDWY YP+L + + +IL++GCGNS E M D
Sbjct: 4 YGSLEYWDDRYTNLTIKKDFDWYHGYPTLKVFLNKFFKKK-DKILMIGCGNSKLGEDMND 62
Query: 68 DGYXXXXXXXXXXXXXXAMMKKYSNRPQLKYIKMDVRQMDEF-QTGSFDSVVDKGTLDSL 126
D + M ++ R L+Y+ MD R M F + FD V DKGTLD++
Sbjct: 63 DEFVDIINMDYSEPLIEYMKERTKGRIGLEYLTMDGRDMKPFFKDNHFDHVFDKGTLDAV 122
Query: 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSC-SWNIKLHV 180
+C + +NA Q+L EV RVLK G +I++TYG+P RL +L + +W +L +
Sbjct: 123 MCSDDDNENAKQILLEVSRVLKPGGFFIVMTYGSPESRLPLLNNPIHNWTTELRM 177
|
|
| UNIPROTKB|D4ADU7 LOC100363561 "Protein LOC100363561" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 62/179 (34%), Positives = 95/179 (53%)
Query: 10 YGEPWYWDNRY--AHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVD 67
Y + YWD RY A +SGP++W+ + S L++ + RIL++GCGNSA S +
Sbjct: 20 YRQVQYWDQRYKDAADSGPYEWFGDFASFRALLEPEL-CPEDRILVLGCGNSALSYELFL 78
Query: 68 DGYXXXXXXXXXXXXXXAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127
G+ AM +Y++ P L++ MD+R +D F +GSFD V++KGTLD+LL
Sbjct: 79 GGFPNVTSVDYSPVVVAAMQVRYAHVPSLRWETMDIRALD-FPSGSFDVVLEKGTLDALL 137
Query: 128 CGSNSRQNAT--------QMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSC-SWNIK 177
G N + Q+L EV RVL G +I +T P +R+ C W+++
Sbjct: 138 AGEPDPWNVSSEGVHTVDQVLSEVSRVLVPGGRFISMTPAGPHFRIRHYAQPCYDWSLR 196
|
|
| UNIPROTKB|F1PUB6 ECE2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 62/166 (37%), Positives = 90/166 (54%)
Query: 10 YGEPWYWDNRY--AHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVD 67
Y E YWD RY A +S P++W+ + S L++ + RIL++GCGNSA S +
Sbjct: 20 YREVQYWDRRYRNAADSAPYEWFGDFSSFRALLEPELQPE-DRILVLGCGNSALSYELFL 78
Query: 68 DGYXXXXXXXXXXXXXXAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127
G+ AM +Y++ P L++ MDVR +D F +GSFD V++KGTLD+LL
Sbjct: 79 GGFPDVTSVDYSSVVVAAMQARYAHVPTLRWETMDVRALD-FPSGSFDVVLEKGTLDALL 137
Query: 128 CGSNSRQNAT--------QMLKEVWRVLKDKGVYILVTYGAPIYRL 165
G N + Q+L EV RVL G +I +T AP +R+
Sbjct: 138 AGEQDPWNVSSEGVHTMDQVLSEVSRVLVHGGRFISLTSAAPHFRI 183
|
|
| ZFIN|ZDB-GENE-070912-214 si:ch211-224b1.4 "si:ch211-224b1.4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 230 (86.0 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
Identities = 59/177 (33%), Positives = 91/177 (51%)
Query: 10 YGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG 69
Y + YW+ RY E F+W+ + L+K +V + + IL++GCGNSA S M G
Sbjct: 28 YKDVDYWNERYRTEES-FEWFGDFTKFEHLLKQHVGTE-ENILMLGCGNSALSYDMCQAG 85
Query: 70 YXXXXXXXXXXXXXXAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCG 129
Y +M +++ + QL ++ MD R++ F G FD V++KGTLD++L
Sbjct: 86 YSSITNVDYSSVCVESMAERHKDCAQLNWLCMDARRL-AFPDGVFDVVLEKGTLDAMLVE 144
Query: 130 SNS----RQNAT----QMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDS-CSWNIK 177
+NA Q+L EV RVLK G +I VT+ P +R + + W+IK
Sbjct: 145 ETDPWKISENAARLLHQVLLEVSRVLKPGGRFISVTFAQPHFRKRLYAQAEYDWSIK 201
|
|
| UNIPROTKB|G3N1Q4 ECE2 "Endothelin-converting enzyme 2 region" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 60/165 (36%), Positives = 86/165 (52%)
Query: 10 YGEPWYWDNRY--AHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVD 67
Y E YWD RY A +S P++W+ + L++ + RIL++GCGNSA S +
Sbjct: 20 YREVQYWDQRYQGAADSAPYEWFGDFSCFRDLLEPELRPL-DRILVLGCGNSALSYEIFL 78
Query: 68 DGYXXXXXXXXXXXXXXAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127
G+ AM +Y++ P L++ MDVR + F +GSFD V++KGTLD+LL
Sbjct: 79 GGFPDVTSVDYSSVVVAAMRARYAHVPTLRWETMDVRALG-FPSGSFDVVLEKGTLDALL 137
Query: 128 CG--------SNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYR 164
G S Q+L EV RVL G +I +T AP +R
Sbjct: 138 TGEQDPWTVSSEGVHTVDQVLNEVSRVLVPAGRFISLTSAAPHFR 182
|
|
| UNIPROTKB|F1S7S8 METTL13 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 239 (89.2 bits), Expect = 3.9e-19, P = 3.9e-19
Identities = 58/183 (31%), Positives = 97/183 (53%)
Query: 6 TTQAYGEPWYWDNRYAHESGP--FDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSE 63
+++ +G YW+ ++ + G F+WY Y L ++ Y+ +++L++GCGNS SE
Sbjct: 7 SSKEFGSVDYWE-KFFQQRGKKAFEWYGTYLELCGVLHKYIKPR-EKVLVIGCGNSELSE 64
Query: 64 GMVDDGYXXXXXXXXXXXXXXAMMKKY-SNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122
+ D GY M ++ S RPQL ++KMD+ QM EF SF V+DKGT
Sbjct: 65 QLYDVGYQDIVNIDISEVVIKQMKERNASRRPQLSFLKMDMTQM-EFPDASFQVVLDKGT 123
Query: 123 LDSLLCGSNSR--QNATQMLKEVWRVLKDKGVYILVTYG-APIYRLGMLRDSCS-WNIKL 178
LD++L + Q +ML EV RVL+ G Y+ ++ A + + + S W +++
Sbjct: 124 LDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHVLKKAVGHFSREGWMVRV 183
Query: 179 HVI 181
H +
Sbjct: 184 HQV 186
|
|
| UNIPROTKB|F1PCU5 F1PCU5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 237 (88.5 bits), Expect = 4.9e-19, P = 4.9e-19
Identities = 58/179 (32%), Positives = 94/179 (52%)
Query: 10 YGEPWYWDNRYAHESGP--FDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVD 67
+G YW+ ++ + G F+WY Y L ++ Y+ +++L++GCGNS SE + D
Sbjct: 11 FGSVDYWE-KFFQQRGKKAFEWYGSYLELCGVLHKYIKPR-EKVLVIGCGNSELSEQLYD 68
Query: 68 DGYXXXXXXXXXXXXXXAMMKKY-SNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126
GY M ++ S RPQ+ ++KMD+ QM EF SF V+DKGTLD++
Sbjct: 69 VGYQDIVNIDISEVVIKQMKERNASRRPQMSFLKMDMTQM-EFPDASFQVVLDKGTLDAV 127
Query: 127 LCGSNSR--QNATQMLKEVWRVLKDKGVYILVTYG-APIYRLGMLRDSCS-WNIKLHVI 181
L + Q +ML EV RVL+ G Y+ ++ A I + + S W +++H +
Sbjct: 128 LTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRVHQV 186
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| UNIPROTKB|F1PDJ6 METTL13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 237 (88.5 bits), Expect = 6.4e-19, P = 6.4e-19
Identities = 58/179 (32%), Positives = 94/179 (52%)
Query: 10 YGEPWYWDNRYAHESGP--FDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVD 67
+G YW+ ++ + G F+WY Y L ++ Y+ +++L++GCGNS SE + D
Sbjct: 11 FGSVDYWE-KFFQQRGKKAFEWYGSYLELCGVLHKYIKPR-EKVLVIGCGNSELSEQLYD 68
Query: 68 DGYXXXXXXXXXXXXXXAMMKKY-SNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126
GY M ++ S RPQ+ ++KMD+ QM EF SF V+DKGTLD++
Sbjct: 69 VGYQDIVNIDISEVVIKQMKERNASRRPQMSFLKMDMTQM-EFPDASFQVVLDKGTLDAV 127
Query: 127 LCGSNSR--QNATQMLKEVWRVLKDKGVYILVTYG-APIYRLGMLRDSCS-WNIKLHVI 181
L + Q +ML EV RVL+ G Y+ ++ A I + + S W +++H +
Sbjct: 128 LTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRVHQV 186
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| UNIPROTKB|A5PK19 METTL13 "Methyltransferase-like protein 13" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 234 (87.4 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 57/183 (31%), Positives = 97/183 (53%)
Query: 6 TTQAYGEPWYWDNRYAHESGP--FDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSE 63
+++ +G YW+ ++ + G F+WY Y L ++ Y+ +++L+VGCGNS SE
Sbjct: 7 SSKEFGSVDYWE-KFFQQRGKKAFEWYGTYLELCGVLHKYIKPR-EKVLVVGCGNSELSE 64
Query: 64 GMVDDGYXXXXXXXXXXXXXXAMMKKY-SNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122
+ D GY M ++ S RP++ ++KMD+ QM EF SF V+DKGT
Sbjct: 65 QLYDVGYQDIVNIDISEVVIKQMKERNASRRPRMSFLKMDMTQM-EFPDASFQVVLDKGT 123
Query: 123 LDSLLCGSNSR--QNATQMLKEVWRVLKDKGVYILVTYG-APIYRLGMLRDSCS-WNIKL 178
LD++L + Q +ML EV RVL+ G Y+ ++ A + + + S W +++
Sbjct: 124 LDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHVLKKAVGHFSREGWMVRV 183
Query: 179 HVI 181
H +
Sbjct: 184 HQV 186
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_fgenesh4_pg.C_LG_X1381 | hypothetical protein (241 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 237 | |||
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 1e-12 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 2e-11 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 1e-08 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 2e-07 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 2e-05 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 7e-05 | |
| TIGR02021 | 219 | TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m | 1e-04 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 2e-04 | |
| pfam05724 | 203 | pfam05724, TPMT, Thiopurine S-methyltransferase (T | 4e-04 | |
| TIGR00452 | 314 | TIGR00452, TIGR00452, tRNA (mo5U34)-methyltransfer | 0.001 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 0.001 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 1e-12
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 12/102 (11%)
Query: 54 VGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGS 113
VGCG +E + G V VD+S M+ R K++ D + F S
Sbjct: 3 VGCGTGLLAEALARRGGARVTGVDLS----PEMLALARKRAPRKFVVGDAEDLP-FPDES 57
Query: 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155
FD VV L L + + L+E+ RVLK G ++
Sbjct: 58 FDVVVSSLVLHHL-------PDPERALREIARVLKPGGKLVI 92
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Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-11
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKK--YSNRPQLKYIKMDVRQMD 107
R+L +GCG A + + V VDIS V +E K ++ +K D ++
Sbjct: 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP 60
Query: 108 EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158
SFD ++ L L+ ++ + L+E R+LK GV +L
Sbjct: 61 PEADESFDVIISDPPLHHLV------EDLARFLEEARRLLKPGGVLVLTLV 105
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There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-08
Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 23/155 (14%)
Query: 45 PSHHQRILIVGCGNSAFSEGMVDDGYE--DVVNVDISSVVIE-----AMMKKYSNRPQLK 97
++L +GCG + + + +VV +DIS IE A Y N ++
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYEN---VE 57
Query: 98 YIKMDVRQMDE--FQTGSFDSVVDKGTLDSLLCGSNSRQNATQ-MLKEVWRVLKDKGVYI 154
+I+ D+ ++ + + SFD V+ L+ +L+E+ RVLK GV I
Sbjct: 58 FIQGDIEELPQLQLEDNSFDVVISNEVLN--------HLPDPDKVLEEIIRVLKPGGVLI 109
Query: 155 LVTYGAPIYRLGMLRDSCSWNIKLHVIEKLVVEEK 189
+ +L D + V+E + ++K
Sbjct: 110 VSDPVLLSELPALLEDLE--RLYAGVLEGAIGKKK 142
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This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-07
Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 16/116 (13%)
Query: 47 HHQRILIVGCGNSAFSEGMVD--DGYEDVVNVDISSVVIEAMMKKY--SNRPQLKYIKMD 102
R+L +GCG + + + G V VD+S ++E + + P++ +++ D
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGAR-VTGVDLSPEMLELARENAKLALGPRITFVQGD 59
Query: 103 VRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158
+ G FD+V G LL ++L + +LK G +L
Sbjct: 60 APDALDLLEG-FDAVFIGGGGGDLL----------ELLDALASLLKPGGRLVLNAV 104
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Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-05
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 51 ILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEF 109
IL +GCG + G V VDIS +E ++ P+++++ D R +
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKVRFVVADARDLPFE 60
Query: 110 QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKG 151
+ GSFD V+ G L S + +L+E R+L+ G
Sbjct: 61 E-GSFDLVICAGLSLDYL----SPKQLRALLREAARLLRPGG 97
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This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 7e-05
Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 23/134 (17%)
Query: 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMK--KYS 91
L L+K +L +GCG + ++ + + DIS M+ K
Sbjct: 22 RLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIANDIS----AGMLAQAKTK 77
Query: 92 NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSR----QNATQMLKEVWRVL 147
+++I D ++ + SFD +V SN + +Q L E+ RVL
Sbjct: 78 LSENVQFICGDAEKLP-LEDSSFDLIV-----------SNLALQWCDDLSQALSELARVL 125
Query: 148 KDKGVYILVTYGAP 161
K G+ T+G
Sbjct: 126 KPGGLLAFSTFGPG 139
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This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 1e-04
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF 109
R+L GCG S + G V VDIS +++ + R ++ +V +
Sbjct: 58 RVLDAGCGTGLLSIELAKRGAI-VKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDL-LS 115
Query: 110 QTGSFDSVVDKGTLDSLL 127
G FD VV +D L+
Sbjct: 116 LCGEFDIVV---CMDVLI 130
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This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 2e-04
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 23/122 (18%)
Query: 50 RILIVGCGNSAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQ 105
R+L G G+ AF G + VV V++ ++ + P+++ + D R+
Sbjct: 3 RVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDARE 62
Query: 106 MDEFQTGSFDSVV----------DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155
+ E GSFD V+ D L + L R+LK GV ++
Sbjct: 63 LLELPDGSFDLVLGNPPYGPRAGDPKDNRDL---------YDRFLAAALRLLKPGGVLVV 113
Query: 156 VT 157
+T
Sbjct: 114 IT 115
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This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|218717 pfam05724, TPMT, Thiopurine S-methyltransferase (TPMT) | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 4e-04
Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 24/138 (17%)
Query: 38 PLIKLYVPSH----HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR 93
PL+ + + R+L+ CG + + + G+ VV V+IS + +E +
Sbjct: 9 PLLVRHWDALNLPPGLRVLVPLCGKALDMVWLAEQGH-FVVGVEISELAVEKFFAEAGLS 67
Query: 94 PQLKYI---------KMDVRQMDEF-----QTGSFDSVVDKGTLDSLLCGSNSRQNATQM 139
P + + +++ D F G FD + D+ L +L R A QM
Sbjct: 68 PPITELSGFKEYRAGGIELLCGDFFTLPREDLGKFDLIYDRAALCALPPEMRPRY-AKQM 126
Query: 140 LKEVWRVLKDKGVYILVT 157
+L G +L+T
Sbjct: 127 Y----ELLPPGGRGLLIT 140
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This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyzes S-methylation of aromatic and heterocyclic sulfhydryl compounds, including anticancer and immunosuppressive thiopurines. Length = 203 |
| >gnl|CDD|129544 TIGR00452, TIGR00452, tRNA (mo5U34)-methyltransferase | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.001
Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 19/134 (14%)
Query: 27 FDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVI--- 83
W + P L+PL + IL VGCG+ M+ G + +V +D + + +
Sbjct: 108 IKWDRVLPHLSPL-------KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQF 160
Query: 84 EAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEV 143
EA+ K N + + + Q+ E +FD+V G L R++ + LK++
Sbjct: 161 EAVRKLLDNDKRAILEPLGIEQLHELY--AFDTVFSMGVL-------YHRKSPLEHLKQL 211
Query: 144 WRVLKDKGVYILVT 157
L KG +L T
Sbjct: 212 KHQLVIKGELVLET 225
|
This model describes a set of proteins with homology in its central region to a large number of methyltransferases active on a variety of substrates. The similarity includes a motif resembling ILDVGCG[SG]G. Known examples to date are restricted to the proteobacteria [Unknown function, Enzymes of unknown specificity]. Length = 314 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.001
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYED--VVNVDISSVVIEAMMKKYSNRPQL 96
+KL Q++L V CG + + + V VD SS ++E KK +
Sbjct: 31 AVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNI 90
Query: 97 KYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKG-VYIL 155
++I+ D + F+ SFD+V ++ G + + + L+E++RVLK G + IL
Sbjct: 91 EFIQADAEAL-PFEDNSFDAV-------TIAFGLRNVTDIQKALREMYRVLKPGGRLVIL 142
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 237 | |||
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.85 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.83 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.82 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.81 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.8 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.8 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.79 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.78 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.77 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.77 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.76 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.76 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.76 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.76 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.74 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.73 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.73 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.73 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.73 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.73 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.73 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.72 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.72 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.72 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.71 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.71 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.71 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.7 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.7 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.69 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.69 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.69 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.69 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.68 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.68 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.68 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.68 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.67 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.67 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.67 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.66 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.66 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.66 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.64 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.64 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.63 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.63 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.61 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.6 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.6 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.6 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.6 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.6 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.6 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.6 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.6 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.6 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.6 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.59 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 99.59 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.59 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.58 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.58 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.58 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.58 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.57 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.56 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.56 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.55 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.54 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.53 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.53 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.52 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.52 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.51 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.51 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.51 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.51 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.51 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.5 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.5 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.5 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.49 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.49 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.49 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.49 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.49 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.48 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.48 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.48 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.48 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.48 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.48 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.47 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.47 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.47 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.47 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.46 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.46 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.46 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.45 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.45 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.45 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.45 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.45 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.44 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 99.44 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.44 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.44 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.44 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.44 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.43 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.42 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.41 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.4 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.39 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.38 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.36 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.35 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.35 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.34 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.34 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.33 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.33 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.32 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.32 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.3 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.3 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.3 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.29 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.29 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.28 | |
| PLN02366 | 308 | spermidine synthase | 99.28 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.28 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.26 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.26 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.26 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.25 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.25 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.23 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.22 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.21 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.21 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.19 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.19 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.17 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.17 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.14 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.14 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.14 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 99.13 | |
| PLN02823 | 336 | spermine synthase | 99.11 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.11 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.1 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 99.1 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.08 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.08 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.08 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.07 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 99.04 | |
| PLN02476 | 278 | O-methyltransferase | 99.04 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.03 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.02 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.02 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 99.02 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.01 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.01 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.0 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.99 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.99 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.99 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.99 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.96 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.94 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.94 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.93 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.92 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.91 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.9 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.9 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.89 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.87 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.86 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.86 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.86 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.85 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.85 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.84 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.83 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.83 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.81 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.8 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.78 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.77 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.75 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.75 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.74 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.72 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.71 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.69 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.68 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.67 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.67 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.65 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.64 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.64 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.64 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.62 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.61 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.6 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.59 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 98.52 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 98.51 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.49 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.49 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.47 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.46 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.44 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.43 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.4 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.39 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.38 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.36 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.36 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.36 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.36 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.31 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.31 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 98.29 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.27 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.27 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.25 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.25 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.23 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.22 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 98.17 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.15 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.14 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.13 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.09 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.03 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.02 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 98.02 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.99 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.93 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.89 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.86 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 97.86 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.85 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.84 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.79 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.77 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.74 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 97.74 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 97.7 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.69 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.58 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 97.55 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.54 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.54 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 97.5 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 97.49 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.46 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.42 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 97.37 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 97.28 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 97.26 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.22 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 97.18 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 97.15 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.13 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.03 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 96.97 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 96.95 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.93 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.87 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 96.85 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 96.81 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 96.81 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 96.8 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 96.8 | |
| PHA01634 | 156 | hypothetical protein | 96.74 | |
| PRK13699 | 227 | putative methylase; Provisional | 96.66 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 96.66 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 96.64 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 96.61 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 96.56 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 96.52 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 96.43 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.42 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 96.4 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 96.37 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 96.34 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 96.25 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 96.11 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 96.06 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 95.94 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 95.94 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 95.9 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.87 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 95.84 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 95.78 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 95.56 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 95.54 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 95.48 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.43 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 95.35 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 95.31 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 95.28 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 95.2 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 94.89 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 94.66 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 94.62 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 94.46 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 94.4 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 94.33 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 94.29 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 94.27 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 94.09 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 94.06 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 93.99 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 93.74 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 93.66 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 93.65 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 93.62 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 93.32 | |
| PLN02494 | 477 | adenosylhomocysteinase | 93.31 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 93.3 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 93.23 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 93.21 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 93.17 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 93.16 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 93.11 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 93.09 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 92.93 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 92.85 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 92.81 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 92.78 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 92.76 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 92.44 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 92.36 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 92.35 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 92.2 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 92.18 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 91.72 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 91.63 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 91.61 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 91.45 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 91.4 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 91.33 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 91.29 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 91.25 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 90.81 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 90.79 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 90.75 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 90.67 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 90.62 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 90.47 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 90.41 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 90.24 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 90.12 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 90.04 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 89.96 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 89.95 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 89.91 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 89.9 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 89.65 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 89.38 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 89.29 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 89.11 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 89.1 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 89.07 | |
| PF02086 | 260 | MethyltransfD12: D12 class N6 adenine-specific DNA | 89.07 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 89.07 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 89.02 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 88.92 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 88.87 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 88.67 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 88.48 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 88.39 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 88.3 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 88.29 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 88.19 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 88.13 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 88.01 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 87.99 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 87.92 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 87.88 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 87.87 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 87.81 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 87.8 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 87.77 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 87.55 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 87.55 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 87.45 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 87.35 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 87.1 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 87.03 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 86.98 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 86.87 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 86.83 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 86.75 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 86.6 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 86.51 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 86.37 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 86.36 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 86.22 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 86.11 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 86.08 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 86.06 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 85.98 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 85.82 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 85.81 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 85.75 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 85.62 | |
| PF04378 | 245 | RsmJ: Ribosomal RNA small subunit methyltransferas | 85.46 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 85.45 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 85.4 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 85.38 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 85.36 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 85.18 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 85.17 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 85.14 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 85.05 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 85.05 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 85.0 | |
| PLN02256 | 304 | arogenate dehydrogenase | 84.93 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 84.91 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 84.9 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 84.75 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 84.73 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 84.27 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 84.15 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 84.09 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 83.9 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 83.9 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 83.89 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 83.84 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 83.73 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 83.6 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 83.35 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 83.25 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 83.23 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 83.22 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 83.15 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 83.14 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 83.08 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 82.69 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 82.67 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 82.58 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 82.44 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 82.43 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 82.22 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 82.15 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 82.15 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 82.12 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 82.06 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 82.01 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 81.93 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 81.68 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 81.68 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 81.38 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 81.29 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 81.28 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 81.01 | |
| KOG2015 | 422 | consensus NEDD8-activating complex, catalytic comp | 81.0 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 80.98 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 80.97 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 80.82 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 80.53 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 80.18 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 80.05 |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-20 Score=150.70 Aligned_cols=118 Identities=23% Similarity=0.380 Sum_probs=101.8
Q ss_pred HHHHHhhCCC-CCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC--CCCcEEEEccccccccccCC
Q 026558 37 APLIKLYVPS-HHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTG 112 (237)
Q Consensus 37 ~~~l~~~~~~-~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~ 112 (237)
.+.+-..... .+.+|||+|||||..+..+++.. .++++|+|+|+.|++.|+++... ..+++|+.+|+.++| |+++
T Consensus 40 r~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-f~D~ 118 (238)
T COG2226 40 RRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-FPDN 118 (238)
T ss_pred HHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC-CCCC
Confidence 4444443332 23499999999999999999874 45999999999999999999963 235999999999999 9999
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCch
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 162 (237)
+||+|.++..|+++ .+....|++++|+|||||++++..+..|.
T Consensus 119 sFD~vt~~fglrnv-------~d~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 119 SFDAVTISFGLRNV-------TDIDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred ccCEEEeeehhhcC-------CCHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 99999999999999 89999999999999999999999987764
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-20 Score=150.65 Aligned_cols=107 Identities=27% Similarity=0.479 Sum_probs=84.8
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||||.++..+++.. ..+++|+|+|+.|++.|+++.. +..+++++++|+.++| +++++||+|++...++
T Consensus 49 ~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp-~~d~sfD~v~~~fglr 127 (233)
T PF01209_consen 49 DRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP-FPDNSFDAVTCSFGLR 127 (233)
T ss_dssp -EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB---S-TT-EEEEEEES-GG
T ss_pred CEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc-CCCCceeEEEHHhhHH
Confidence 499999999999999998863 3599999999999999999984 2348999999999999 9999999999999999
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchh
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 163 (237)
.+ .+....+++++|+|||||++++..++.|..
T Consensus 128 n~-------~d~~~~l~E~~RVLkPGG~l~ile~~~p~~ 159 (233)
T PF01209_consen 128 NF-------PDRERALREMYRVLKPGGRLVILEFSKPRN 159 (233)
T ss_dssp G--------SSHHHHHHHHHHHEEEEEEEEEEEEEB-SS
T ss_pred hh-------CCHHHHHHHHHHHcCCCeEEEEeeccCCCC
Confidence 88 778899999999999999999999877643
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-19 Score=141.76 Aligned_cols=140 Identities=17% Similarity=0.269 Sum_probs=109.4
Q ss_pred hhhHHHhccCCCCceeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--
Q 026558 14 WYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-- 91 (237)
Q Consensus 14 ~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-- 91 (237)
+||+..|....-.++-..+.+.+.+++.....+.+++|||+|||.|..+.+++++|+ .|+|+|+|+.+++.+.+...
T Consensus 1 ~~Wd~ry~~~~~~w~~~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~ 79 (213)
T TIGR03840 1 EFWHERWQEGQIGFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLT 79 (213)
T ss_pred ChHHHHHhcCCCCCccCCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCC
Confidence 489999988754443234555577777664322334999999999999999999998 99999999999998644321
Q ss_pred ------------CCCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 92 ------------NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 92 ------------~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
...++++.++|+.+++....+.||.|+...+++++ +++....+++.+.++|+|||++++.++.
T Consensus 80 ~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l-----~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 80 PTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIAL-----PEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred cceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccC-----CHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 12368899999998762224679999999999988 7888899999999999999987777653
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-19 Score=133.83 Aligned_cols=155 Identities=23% Similarity=0.459 Sum_probs=117.5
Q ss_pred CCCCCCCChhhhHHHhccCCCCc--------eeecCCcC--hHHHHHhhCC-----CCCCcEEEEccCCchhHHHHHHcC
Q 026558 5 TTTQAYGEPWYWDNRYAHESGPF--------DWYQKYPS--LAPLIKLYVP-----SHHQRILIVGCGNSAFSEGMVDDG 69 (237)
Q Consensus 5 ~~~~~~~~~~~w~~~y~~~~~~~--------~~~~~~~~--~~~~l~~~~~-----~~~~~iLdlG~G~G~~~~~~~~~~ 69 (237)
.+.+.+++++||++.|..+-..| -|++.... +.+++...+. ....+|||||||+|.++..+++.+
T Consensus 10 l~~S~LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~eg 89 (227)
T KOG1271|consen 10 LGQSKLGTKSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEG 89 (227)
T ss_pred ccccccchHHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhc
Confidence 46788999999999998773322 27763222 3333333222 222399999999999999999998
Q ss_pred CC-eEEEEeCCHHHHHHHHHHcCC--CCC-cEEEEccccccccccCCCccEEEeccccceec-cCCCChHHHHHHHHHHH
Q 026558 70 YE-DVVNVDISSVVIEAMMKKYSN--RPQ-LKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL-CGSNSRQNATQMLKEVW 144 (237)
Q Consensus 70 ~~-~~~~vD~s~~~~~~a~~~~~~--~~~-~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~-~~~~~~~~~~~~l~~~~ 144 (237)
+. ..+|+|+|+.+++.|+...+. .++ ++|.+.|+.+.. +..++||+|+..++++.+. |+......+.-++..+.
T Consensus 90 f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~-~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~ 168 (227)
T KOG1271|consen 90 FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD-FLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVE 168 (227)
T ss_pred CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCc-ccccceeEEeecCceeeeecCCCCcccceeeehhhHh
Confidence 54 599999999999998877742 334 999999999875 7789999999999999885 33333334466899999
Q ss_pred HhcCCCcEEEEEEcCC
Q 026558 145 RVLKDKGVYILVTYGA 160 (237)
Q Consensus 145 ~~L~pgG~l~~~~~~~ 160 (237)
+.|+|||++++.+..-
T Consensus 169 ~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 169 KLLSPGGIFVITSCNF 184 (227)
T ss_pred hccCCCcEEEEEecCc
Confidence 9999999999987544
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-19 Score=123.29 Aligned_cols=95 Identities=29% Similarity=0.569 Sum_probs=83.7
Q ss_pred EEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceeccCCC
Q 026558 52 LIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSN 131 (237)
Q Consensus 52 LdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~ 131 (237)
||+|||+|..+..+++.+..+++++|+++.+++.++++... .++.+...|+.+++ +++++||+|++..+++++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~-~~~~~~~~d~~~l~-~~~~sfD~v~~~~~~~~~----- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN-EGVSFRQGDAEDLP-FPDNSFDVVFSNSVLHHL----- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT-STEEEEESBTTSSS-S-TT-EEEEEEESHGGGS-----
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc-cCchheeehHHhCc-cccccccccccccceeec-----
Confidence 89999999999999999545999999999999999999864 45569999999998 999999999999999998
Q ss_pred ChHHHHHHHHHHHHhcCCCcEEEE
Q 026558 132 SRQNATQMLKEVWRVLKDKGVYIL 155 (237)
Q Consensus 132 ~~~~~~~~l~~~~~~L~pgG~l~~ 155 (237)
++...+++++.|+|||||++++
T Consensus 74 --~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 --EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp --SHHHHHHHHHHHHEEEEEEEEE
T ss_pred --cCHHHHHHHHHHHcCcCeEEeC
Confidence 8999999999999999999975
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-18 Score=137.11 Aligned_cols=139 Identities=19% Similarity=0.287 Sum_probs=108.4
Q ss_pred hhhhHHHhccCCCCceeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-
Q 026558 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS- 91 (237)
Q Consensus 13 ~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~- 91 (237)
.+||+..|......+.-..+.+.+.+.+.....+.+++|||+|||.|..+.+++++|+ +|+|+|+|+.+++.+.....
T Consensus 3 ~~~Wd~rw~~~~~~~~~~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l 81 (218)
T PRK13255 3 PDFWHEKWAENQIGFHQEEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGL 81 (218)
T ss_pred HhHHHHHHcCCCCCCCCCCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCC
Confidence 6799999998765443344555566666543323334999999999999999999997 99999999999998753221
Q ss_pred -------------CCCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 92 -------------NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 92 -------------~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...++++.++|+.++.....+.||.|+...+++++ +++....+++.+.++|+|||++++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l-----~~~~R~~~~~~l~~lL~pgG~~~l~~ 155 (218)
T PRK13255 82 TPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIAL-----PEEMRERYVQQLAALLPAGCRGLLVT 155 (218)
T ss_pred CccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhC-----CHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 12468889999998862233689999999999988 78889999999999999999766644
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.1e-18 Score=132.62 Aligned_cols=129 Identities=20% Similarity=0.361 Sum_probs=99.0
Q ss_pred CChhhhHHHhccCCCCceeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHc
Q 026558 11 GEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKY 90 (237)
Q Consensus 11 ~~~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~ 90 (237)
+++.||...|.... +.+.+.+.+.. .++ .+|||+|||+|..+..+++++. +++|+|+|+.+++.++++.
T Consensus 4 ~~~~~~~~~~~~~~-------~~~~l~~~l~~--~~~-~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~ 72 (197)
T PRK11207 4 RDENYFTDKYGLTR-------THSEVLEAVKV--VKP-GKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIK 72 (197)
T ss_pred chHHHHHHhcCCCC-------ChHHHHHhccc--CCC-CcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHH
Confidence 34567776665331 23333333331 223 4999999999999999999876 9999999999999999876
Q ss_pred C--CCCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 91 S--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 91 ~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
. +..++.+.+.|+.+++ + .++||+|++..+++++ ++.....+++++.++|+|||.+++..
T Consensus 73 ~~~~~~~v~~~~~d~~~~~-~-~~~fD~I~~~~~~~~~-----~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 73 AAENLDNLHTAVVDLNNLT-F-DGEYDFILSTVVLMFL-----EAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred HHcCCCcceEEecChhhCC-c-CCCcCEEEEecchhhC-----CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 4 2346888889988775 4 4679999999999887 56688999999999999999976654
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-18 Score=139.26 Aligned_cols=106 Identities=19% Similarity=0.349 Sum_probs=92.9
Q ss_pred CcEEEEccCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHcC-----CCCCcEEEEccccccccccCCCccEEEecc
Q 026558 49 QRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYS-----NRPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-~-~~~~~~vD~s~~~~~~a~~~~~-----~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~ 121 (237)
.+|||+|||+|.++..+++. + ..+++|+|+|++|++.|+++.. ...+++++++|+.+++ +++++||+|++..
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp-~~~~sfD~V~~~~ 153 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP-FDDCYFDAITMGY 153 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC-CCCCCEeEEEEec
Confidence 49999999999999988876 3 2489999999999999987753 2347899999999988 8889999999999
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCch
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 162 (237)
+++++ .+...+++++.|+|||||++++.++..+.
T Consensus 154 ~l~~~-------~d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 154 GLRNV-------VDRLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred ccccC-------CCHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 99988 78899999999999999999999876643
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.4e-18 Score=121.17 Aligned_cols=103 Identities=27% Similarity=0.388 Sum_probs=85.4
Q ss_pred CcEEEEccCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHc---CCCCCcEEEEccc-cccccccCCCccEEEecc-c
Q 026558 49 QRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKY---SNRPQLKYIKMDV-RQMDEFQTGSFDSVVDKG-T 122 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~---~~~~~~~~~~~d~-~~~~~~~~~~fD~I~~~~-~ 122 (237)
.+|||||||+|.++..+++. ...+++|+|+|+.+++.|+++. ...++++++++|+ .... ..+.||+|++.. +
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD--FLEPFDLVICSGFT 80 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT--TSSCEEEEEECSGS
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc--cCCCCCEEEECCCc
Confidence 38999999999999999993 3459999999999999999998 2346999999999 3332 356799999998 5
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
++++ .+.+....+++.+.+.|+|||++++.+
T Consensus 81 ~~~~----~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFL----LPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGC----CHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccc----cchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 5544 133678889999999999999999875
|
... |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-18 Score=141.37 Aligned_cols=135 Identities=19% Similarity=0.341 Sum_probs=103.5
Q ss_pred HHHhccCCCCceeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---C
Q 026558 17 DNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---R 93 (237)
Q Consensus 17 ~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~ 93 (237)
+..|.+..+.+...-.+..+..++......+ .+|||+|||+|.++..+++.+. +++++|+|+.+++.|+++... .
T Consensus 15 ~~~y~~~~g~~r~~~~~~~~~~~l~~l~~~~-~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~ 92 (255)
T PRK11036 15 RNIYGTTKGQIRQAILWQDLDRLLAELPPRP-LRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVS 92 (255)
T ss_pred HhccCCCccHHHHHHHHHHHHHHHHhcCCCC-CEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCc
Confidence 4455544433221111233445555544333 4999999999999999999875 999999999999999998753 2
Q ss_pred CCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 94 PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 94 ~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
++++++++|+.+++.+..++||+|++..+++++ .+...+++++.++|+|||++++..+..
T Consensus 93 ~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 93 DNMQFIHCAAQDIAQHLETPVDLILFHAVLEWV-------ADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred cceEEEEcCHHHHhhhcCCCCCEEEehhHHHhh-------CCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 478999999988754567899999999999998 677899999999999999998876543
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-17 Score=130.62 Aligned_cols=144 Identities=16% Similarity=0.205 Sum_probs=118.7
Q ss_pred CCCChhhhHHHhccCCCCceeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHH
Q 026558 9 AYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMK 88 (237)
Q Consensus 9 ~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~ 88 (237)
+..+.+||+++|.+....|+-..+.+.+.+.+.......+.+||++|||.|....+++++|+ .|+|+|+|+.+++.+.+
T Consensus 5 ~~~~~~fW~~rw~~~~~~f~~~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~ 83 (226)
T PRK13256 5 ETNNNQYWLDRWQNDDVGFCQESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFS 83 (226)
T ss_pred ccCCHHHHHHHHhcCCCCCccCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHH
Confidence 34567799999999988887666666676777665543334999999999999999999998 89999999999999866
Q ss_pred HcC--------------CCCCcEEEEcccccccc--ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcE
Q 026558 89 KYS--------------NRPQLKYIKMDVRQMDE--FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGV 152 (237)
Q Consensus 89 ~~~--------------~~~~~~~~~~d~~~~~~--~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~ 152 (237)
... ...++++.++|+.+++. -..+.||+|+...++.++ +++...++++.+.++|+|||.
T Consensus 84 e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Al-----pp~~R~~Y~~~l~~lL~pgg~ 158 (226)
T PRK13256 84 QNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIAL-----PNDLRTNYAKMMLEVCSNNTQ 158 (226)
T ss_pred HcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcC-----CHHHHHHHHHHHHHHhCCCcE
Confidence 321 12478999999999862 123689999999999999 889999999999999999999
Q ss_pred EEEEEc
Q 026558 153 YILVTY 158 (237)
Q Consensus 153 l~~~~~ 158 (237)
++++++
T Consensus 159 llll~~ 164 (226)
T PRK13256 159 ILLLVM 164 (226)
T ss_pred EEEEEE
Confidence 988876
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=136.63 Aligned_cols=118 Identities=16% Similarity=0.322 Sum_probs=97.9
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCcc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
...++......+..+|||+|||+|..+..+++....+++|+|+|+.+++.|+++.....++.+.++|+.+.+ +++++||
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~-~~~~~FD 119 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKD-FPENTFD 119 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCC-CCCCCeE
Confidence 455665543333349999999999999988875445999999999999999998865567999999998876 7788999
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+|++..+++|+ +..+...+++++.++|+|||.+++..+.
T Consensus 120 ~V~s~~~l~h~-----~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 120 MIYSRDAILHL-----SYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred EEEEhhhHHhC-----CHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99998888777 4458899999999999999999998753
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.5e-18 Score=142.64 Aligned_cols=102 Identities=23% Similarity=0.323 Sum_probs=90.8
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||||||+|.++..+++....+++|+|+|+.+++.++++... ..+++++++|+.+++ +++++||+|++..+++|
T Consensus 120 ~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~FD~V~s~~~~~h 198 (340)
T PLN02244 120 KRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP-FEDGQFDLVWSMESGEH 198 (340)
T ss_pred CeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC-CCCCCccEEEECCchhc
Confidence 48999999999999999987545999999999999999987632 247899999999887 88899999999999999
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+ .+...+++++.++|+|||.+++.++
T Consensus 199 ~-------~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 199 M-------PDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred c-------CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8 6788999999999999999999774
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-18 Score=134.16 Aligned_cols=103 Identities=25% Similarity=0.386 Sum_probs=91.7
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||+|||-|.++..+++.|. .|+|+|+++.+++.|+.+... .-++++.+..+.++. ...++||+|+|..+++|+
T Consensus 61 ~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~-~~~~~FDvV~cmEVlEHv- 137 (243)
T COG2227 61 LRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLA-SAGGQFDVVTCMEVLEHV- 137 (243)
T ss_pred CeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHH-hcCCCccEEEEhhHHHcc-
Confidence 4999999999999999999995 999999999999999988753 235778888888876 445899999999999999
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.++..+++.+.+.+||||.+++.|...
T Consensus 138 ------~dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 138 ------PDPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred ------CCHHHHHHHHHHHcCCCcEEEEecccc
Confidence 888999999999999999999988654
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-17 Score=132.44 Aligned_cols=139 Identities=24% Similarity=0.400 Sum_probs=110.7
Q ss_pred hhhhHHHhccCCCCceeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-
Q 026558 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS- 91 (237)
Q Consensus 13 ~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~- 91 (237)
.++|++.|.+..-.|+.....+.+.+++.....+.+.+||..|||.|....+++++|+ +|+|+|+|+.+++.+.+...
T Consensus 3 ~~~W~~~w~~~~~~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~ 81 (218)
T PF05724_consen 3 PEFWEERWQEGQTPWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNL 81 (218)
T ss_dssp HHHHHHHHHTT--TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhcc
Confidence 7899999999988888777777888888885444445999999999999999999998 99999999999999854321
Q ss_pred -------------CCCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 92 -------------NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 92 -------------~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...++++.++|+.+++.-..++||+|+...++..+ +++.+.++.+.+.++|+|||.+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Al-----pp~~R~~Ya~~l~~ll~p~g~~lLi~ 155 (218)
T PF05724_consen 82 EPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCAL-----PPEMRERYAQQLASLLKPGGRGLLIT 155 (218)
T ss_dssp EEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS------GGGHHHHHHHHHHCEEEEEEEEEEE
T ss_pred CCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccC-----CHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 11357899999999873334689999999999998 78999999999999999999955554
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-17 Score=138.93 Aligned_cols=103 Identities=17% Similarity=0.304 Sum_probs=91.3
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||||||+|.++..+++.+. +++|+|+++++++.|+++... ..++.++++|+.+++ +..++||+|++..+++|
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~-~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA-DEGRKFDAVLSLEVIEH 210 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh-hccCCCCEEEEhhHHHh
Confidence 3899999999999999998765 999999999999999987642 237899999998887 66789999999999999
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+ .+...+++++.++|+|||.+++.+...
T Consensus 211 v-------~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 211 V-------ANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred c-------CCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 9 788899999999999999999988654
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=125.65 Aligned_cols=101 Identities=17% Similarity=0.254 Sum_probs=84.5
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++... .-++.+...|+...+ + .++||+|++..+++++
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~-~-~~~fD~I~~~~~~~~~- 107 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAA-L-NEDYDFIFSTVVFMFL- 107 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcc-c-cCCCCEEEEecccccC-
Confidence 4999999999999999999876 999999999999999887642 124677777876554 4 3579999999999887
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+..+...+++++.++|+|||++++..
T Consensus 108 ----~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 108 ----QAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred ----CHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 55678899999999999999976654
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.5e-17 Score=132.89 Aligned_cols=100 Identities=23% Similarity=0.364 Sum_probs=89.1
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~ 128 (237)
.+|||+|||+|.++..+++.+. +++++|+|+.+++.++++.. ...++++|+..++ +++++||+|+++.++++.
T Consensus 44 ~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~---~~~~~~~d~~~~~-~~~~~fD~V~s~~~l~~~-- 116 (251)
T PRK10258 44 THVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA---ADHYLAGDIESLP-LATATFDLAWSNLAVQWC-- 116 (251)
T ss_pred CeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC---CCCEEEcCcccCc-CCCCcEEEEEECchhhhc--
Confidence 4899999999999999988764 99999999999999998863 3578899998887 778899999999999988
Q ss_pred CCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 129 GSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.+...++.++.++|+|||.+++.++..
T Consensus 117 -----~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 117 -----GNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred -----CCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 778899999999999999999987654
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-17 Score=134.34 Aligned_cols=108 Identities=21% Similarity=0.347 Sum_probs=94.5
Q ss_pred CCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCC-CcEEEEccccccccccCCCccEEEeccc
Q 026558 46 SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRP-QLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (237)
Q Consensus 46 ~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~-~~~~~~~d~~~~~~~~~~~fD~I~~~~~ 122 (237)
+++.+|||||||+|.+++.+++....+|+|+++|+++.+.+++++. +.. ++++...|..++. +.||.|+|.+.
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~----e~fDrIvSvgm 146 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE----EPFDRIVSVGM 146 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc----cccceeeehhh
Confidence 3334999999999999999999864599999999999999999874 333 7889998988885 34999999999
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCch
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 162 (237)
++|+ +.+....+++.+.++|+|||++++.+...+.
T Consensus 147 fEhv-----g~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 147 FEHV-----GKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred HHHh-----CcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 9999 7788999999999999999999998876654
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.4e-17 Score=133.22 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=91.2
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSF 114 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~f 114 (237)
+..++.........+|||+|||+|.++..+++.. ..+++|+|+|+.+++.|+++ +++++++|+.+++ +.++|
T Consensus 18 ~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~--~~~~f 90 (255)
T PRK14103 18 FYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----GVDARTGDVRDWK--PKPDT 90 (255)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----CCcEEEcChhhCC--CCCCc
Confidence 4556665544444599999999999999999874 34899999999999999874 5789999998764 45789
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
|+|+++.+++++ .+...++++++++|+|||.+++...
T Consensus 91 D~v~~~~~l~~~-------~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 91 DVVVSNAALQWV-------PEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred eEEEEehhhhhC-------CCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 999999999998 6778999999999999999988753
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-17 Score=125.97 Aligned_cols=140 Identities=19% Similarity=0.329 Sum_probs=102.3
Q ss_pred CChhhhHHHhccCCCCceeecC-CcC--hHHHHHhhCCCCC-CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHH
Q 026558 11 GEPWYWDNRYAHESGPFDWYQK-YPS--LAPLIKLYVPSHH-QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAM 86 (237)
Q Consensus 11 ~~~~~w~~~y~~~~~~~~~~~~-~~~--~~~~l~~~~~~~~-~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a 86 (237)
++.++|++.+... +.|..... |+. ....+...++.+. .++||+|||.|.++..++.++. +++++|+|+.+++.|
T Consensus 4 ~~~~~l~~~la~~-DPW~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd-~LlavDis~~Al~~A 81 (201)
T PF05401_consen 4 DNYQLLNRELAND-DPWGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCD-RLLAVDISPRALARA 81 (201)
T ss_dssp SHHHHHHHHHTSS-SGGGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEE-EEEEEES-HHHHHHH
T ss_pred cHHHHHHHHhCCC-CCCCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhhC-ceEEEeCCHHHHHHH
Confidence 3456777766644 55543211 222 1233443334443 5999999999999999999974 999999999999999
Q ss_pred HHHcCCCCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 87 MKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 87 ~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+++..+.+++++.+.|+.+.. +.++||+|+++.+++++ .+.++...+++.+...|+|||.+++-+.
T Consensus 82 r~Rl~~~~~V~~~~~dvp~~~--P~~~FDLIV~SEVlYYL----~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 82 RERLAGLPHVEWIQADVPEFW--PEGRFDLIVLSEVLYYL----DDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp HHHTTT-SSEEEEES-TTT-----SS-EEEEEEES-GGGS----SSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHhcCCCCCeEEEECcCCCCC--CCCCeeEEEEehHhHcC----CCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 999988889999999998763 78999999999999998 4457889999999999999999999775
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.4e-17 Score=122.09 Aligned_cols=103 Identities=24% Similarity=0.488 Sum_probs=88.8
Q ss_pred CcEEEEccCCchhHHHHHH-cC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccc-ccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVD-DG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDE-FQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~-~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~-~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|.++..+++ .+ ..+++|+|+|+++++.|+++++ +.++++|.++|+.+++. ++ +.||+|++..++
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~l 83 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGVL 83 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEESTG
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcCch
Confidence 3999999999999999994 33 3599999999999999999763 44589999999999652 22 799999999999
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+++ .+...+++++.++|+++|++++....
T Consensus 84 ~~~-------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 84 HHF-------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp GGT-------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhc-------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 988 88889999999999999999998865
|
... |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.72 E-value=9e-17 Score=124.22 Aligned_cols=129 Identities=22% Similarity=0.386 Sum_probs=95.5
Q ss_pred ChhhhHHHhccCCCCceeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC
Q 026558 12 EPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS 91 (237)
Q Consensus 12 ~~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~ 91 (237)
+++||...|..+... +.+.+.+.. + ++ +++||||||.|+.+.+++++|+ .|+++|+|+.+++.+++...
T Consensus 5 ~~~y~~kky~~~~~h-------s~v~~a~~~-~-~~-g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~ 73 (192)
T PF03848_consen 5 PEDYFHKKYGLTPTH-------SEVLEAVPL-L-KP-GKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAE 73 (192)
T ss_dssp STTHHHHHHTB-----------HHHHHHCTT-S--S-SEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCc-------HHHHHHHhh-c-CC-CcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHh
Confidence 456887777766222 223333221 1 23 4999999999999999999998 99999999999999887663
Q ss_pred -CCCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 92 -NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 92 -~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
..-.++..+.|+.+.. + ++.||+|++..+++++ .++....+++.+...++|||++++.++
T Consensus 74 ~~~l~i~~~~~Dl~~~~-~-~~~yD~I~st~v~~fL-----~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 74 EEGLDIRTRVADLNDFD-F-PEEYDFIVSTVVFMFL-----QRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp HTT-TEEEEE-BGCCBS---TTTEEEEEEESSGGGS------GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hcCceeEEEEecchhcc-c-cCCcCEEEEEEEeccC-----CHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 2235888999998876 5 4689999998889888 778889999999999999999888654
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.9e-17 Score=126.25 Aligned_cols=114 Identities=16% Similarity=0.236 Sum_probs=101.0
Q ss_pred CcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccC
Q 026558 33 YPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQT 111 (237)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~ 111 (237)
.....+++.........+|.|||||+|..+..++++. .+.++|+|.|++|++.|+++. ++++|..+|+.++. +.
T Consensus 16 tRPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---p~~~f~~aDl~~w~--p~ 90 (257)
T COG4106 16 TRPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---PDATFEEADLRTWK--PE 90 (257)
T ss_pred cCcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---CCCceecccHhhcC--CC
Confidence 4456777776655555699999999999999999997 459999999999999999998 78999999999996 67
Q ss_pred CCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
...|+++++.+++++ .+...+|..+...|.|||.+.++..
T Consensus 91 ~~~dllfaNAvlqWl-------pdH~~ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 91 QPTDLLFANAVLQWL-------PDHPELLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred Cccchhhhhhhhhhc-------cccHHHHHHHHHhhCCCceEEEECC
Confidence 899999999999999 8899999999999999999998764
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.7e-17 Score=114.87 Aligned_cols=95 Identities=31% Similarity=0.574 Sum_probs=80.9
Q ss_pred EEEEccCCchhHHHHHHcC----CCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccccCCCccEEEec-cccc
Q 026558 51 ILIVGCGNSAFSEGMVDDG----YEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDK-GTLD 124 (237)
Q Consensus 51 iLdlG~G~G~~~~~~~~~~----~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~-~~l~ 124 (237)
|||+|||+|..+..+.+.. ..+++|+|+|+++++.++++... ..++++++.|+.+++ +..++||+|++. .+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~-~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLP-FSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHH-HHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCc-ccCCCeeEEEEcCCccC
Confidence 7999999999999998874 25999999999999999999842 248999999999987 678899999995 4599
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCc
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKG 151 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG 151 (237)
|+ +++....+++++.++|+|||
T Consensus 80 ~~-----~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HL-----SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GS-----SHHHHHHHHHHHHHTEEEEE
T ss_pred CC-----CHHHHHHHHHHHHHHhCCCC
Confidence 88 88899999999999999998
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-16 Score=127.11 Aligned_cols=105 Identities=22% Similarity=0.346 Sum_probs=90.9
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++.. ..+++|+|+|+.+++.++++.. +.++++++++|+.+++ ++.++||+|++..+++
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~~l~ 125 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP-FDDNSFDYVTIGFGLR 125 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC-CCCCCccEEEEecccc
Confidence 499999999999999998763 3499999999999999998874 2357899999998876 7778999999999998
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
++ .+...+++++.++|+|||.+++.+...+
T Consensus 126 ~~-------~~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 155 (231)
T TIGR02752 126 NV-------PDYMQVLREMYRVVKPGGKVVCLETSQP 155 (231)
T ss_pred cC-------CCHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 88 6778899999999999999998876544
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=125.99 Aligned_cols=100 Identities=19% Similarity=0.313 Sum_probs=85.1
Q ss_pred CcEEEEccCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||+|||+|..+..+++. +..+++|+|+|+.+++.|+++. +++.+.++|+.+ + +++++||+|++..+++|+
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~---~~~~~~~~d~~~-~-~~~~sfD~V~~~~vL~hl- 118 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL---PNINIIQGSLFD-P-FKDNFFDLVLTKGVLIHI- 118 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC---CCCcEEEeeccC-C-CCCCCEEEEEECChhhhC-
Confidence 38999999999999999886 3459999999999999999876 467888999887 5 778899999999999998
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+++....+++++.++++ +.+++..+..
T Consensus 119 ----~p~~~~~~l~el~r~~~--~~v~i~e~~~ 145 (204)
T TIGR03587 119 ----NPDNLPTAYRELYRCSN--RYILIAEYYN 145 (204)
T ss_pred ----CHHHHHHHHHHHHhhcC--cEEEEEEeeC
Confidence 56788999999999984 6777766433
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-16 Score=129.50 Aligned_cols=110 Identities=15% Similarity=0.300 Sum_probs=92.0
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSF 114 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~f 114 (237)
...++......+..+|||+|||+|.++..+++.. ..+++|+|+|+.+++.|+++. +++.+..+|+.++. +..+|
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---~~~~~~~~d~~~~~--~~~~f 94 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---PDCQFVEADIASWQ--PPQAL 94 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---CCCeEEECchhccC--CCCCc
Confidence 3455554433333599999999999999998874 359999999999999999986 56889999998764 45689
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
|+|+++.+++++ .+...+++++.++|+|||.+++..
T Consensus 95 D~v~~~~~l~~~-------~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 95 DLIFANASLQWL-------PDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred cEEEEccChhhC-------CCHHHHHHHHHHhcCCCcEEEEEC
Confidence 999999999998 677899999999999999998865
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-16 Score=128.22 Aligned_cols=178 Identities=15% Similarity=0.160 Sum_probs=120.4
Q ss_pred hhCCCCCCcEEEEccCCchhHHHHHHc---CCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCcc
Q 026558 42 LYVPSHHQRILIVGCGNSAFSEGMVDD---GYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 42 ~~~~~~~~~iLdlG~G~G~~~~~~~~~---~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
....++. +|||+|||+|..+..+++. ...+++|+|+|+.|++.|++++.. ..+++++++|+.+.+ + ..+|
T Consensus 52 ~~~~~~~-~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~-~--~~~D 127 (247)
T PRK15451 52 RFVQPGT-QVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-I--ENAS 127 (247)
T ss_pred HhCCCCC-EEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC-C--CCCC
Confidence 3344444 9999999999999888773 235999999999999999999852 237899999998876 3 4599
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc-hhh-hhcccCCCCceEEE--EEeccceecccCC
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP-IYR-LGMLRDSCSWNIKL--HVIEKLVVEEKSG 191 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~-~~~-~~~~~~~~~w~~~~--~~~~~~~~~~~~~ 191 (237)
+|+++.+++++ +......++++++++|+|||.+++.+...+ ... ..... ..|.... ........... .
T Consensus 128 ~vv~~~~l~~l-----~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~--~~~~~~~~~~g~s~~ei~~~-~ 199 (247)
T PRK15451 128 MVVLNFTLQFL-----EPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLF--NMHHDFKRANGYSELEISQK-R 199 (247)
T ss_pred EEehhhHHHhC-----CHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHH--HHHHHHHHHcCCCHHHHHHH-H
Confidence 99999999988 556678899999999999999999763221 100 01000 0010000 00000000000 0
Q ss_pred CCCcccccCcccCCCCCchhhhcCCCCCceE------EEEEecCCC
Q 026558 192 HPIWELTNPVPLENDGRSVEELLGKNPDVHY------IYVCTKDES 231 (237)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~yv~~k~~~ 231 (237)
........|.+.....++..+.+|..+.+.| .|+|+|+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k~~~ 245 (247)
T PRK15451 200 SMLENVMLTDSVETHKARLHKAGFEHSELWFQCFNFGSLVALKAED 245 (247)
T ss_pred HHHHhhcccCCHHHHHHHHHHcCchhHHHHHHHHhHHHHhheeccc
Confidence 0111234567777788888888998888877 688988764
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-16 Score=139.27 Aligned_cols=114 Identities=20% Similarity=0.335 Sum_probs=94.9
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC-CCcEEEEccccccccccCCCcc
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD 115 (237)
..++.........+|||+|||+|..+..+++....+++|+|+|+.+++.|+++..+. .++.+.++|+...+ +++++||
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD 334 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT-YPDNSFD 334 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC-CCCCCEE
Confidence 334444333333499999999999999888865459999999999999999887542 47899999998876 7778999
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+|++..+++|+ .+...+++++.++|+|||.+++.++
T Consensus 335 ~I~s~~~l~h~-------~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 335 VIYSRDTILHI-------QDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred EEEECCccccc-------CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 99999999999 7788999999999999999998865
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.8e-17 Score=123.82 Aligned_cols=106 Identities=25% Similarity=0.446 Sum_probs=89.8
Q ss_pred HHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc-cccccCCCccE
Q 026558 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-MDEFQTGSFDS 116 (237)
Q Consensus 38 ~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~~~~~~~fD~ 116 (237)
++|...++++. +|||||||.|.++..+.+....+..|+|++++.+..|.++ .+.++++|+.+ +..|++++||+
T Consensus 5 ~~I~~~I~pgs-rVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-----Gv~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 5 QIIAEWIEPGS-RVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-----GVSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred HHHHHHcCCCC-EEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-----CCCEEECCHHHhHhhCCCCCccE
Confidence 45667788887 9999999999999999886556999999999999999888 57899999976 44589999999
Q ss_pred EEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 117 I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
|+.+.+++++ ..+..+|+++.|+ |.-.+++++.
T Consensus 79 VIlsqtLQ~~-------~~P~~vL~EmlRV----gr~~IVsFPN 111 (193)
T PF07021_consen 79 VILSQTLQAV-------RRPDEVLEEMLRV----GRRAIVSFPN 111 (193)
T ss_pred EehHhHHHhH-------hHHHHHHHHHHHh----cCeEEEEecC
Confidence 9999999999 8999999999988 4444555444
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.3e-16 Score=128.45 Aligned_cols=101 Identities=20% Similarity=0.300 Sum_probs=86.9
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
++|||+|||+|..+..+++.+. +++|+|+|+.+++.++++... ..++++...|+.... + +++||+|++..+++++
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~-~-~~~fD~I~~~~vl~~l- 197 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS-I-QEEYDFILSTVVLMFL- 197 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc-c-cCCccEEEEcchhhhC-
Confidence 3999999999999999999876 999999999999999988742 236788888887764 3 6789999999999987
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+.+....+++++.++|+|||++++..
T Consensus 198 ----~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 198 ----NRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred ----CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 56788899999999999999977654
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-15 Score=117.23 Aligned_cols=121 Identities=15% Similarity=0.178 Sum_probs=93.2
Q ss_pred CCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEec
Q 026558 44 VPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (237)
Q Consensus 44 ~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~ 120 (237)
++++ .+|||+|||+|..+..++... ..+++++|+++.+++.|+++.+ +..+++++++|+.+++ . .++||+|+++
T Consensus 43 l~~g-~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~-~-~~~fDlV~~~ 119 (187)
T PRK00107 43 LPGG-ERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFG-Q-EEKFDVVTSR 119 (187)
T ss_pred cCCC-CeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCC-C-CCCccEEEEc
Confidence 3444 499999999999999888643 3599999999999999998874 3346999999998876 4 6789999987
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchhhhhcccCCCCceEEE
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKL 178 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~w~~~~ 178 (237)
. + .....+++.+.+.|+|||++++............+....+|.+..
T Consensus 120 ~----~-------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~ 166 (187)
T PRK00107 120 A----V-------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEE 166 (187)
T ss_pred c----c-------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEee
Confidence 4 2 445789999999999999999987554444444443444665443
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.2e-16 Score=121.79 Aligned_cols=124 Identities=15% Similarity=0.252 Sum_probs=102.4
Q ss_pred HHHHHhhCCCCC-CcEEEEccCCchhHHHHHHcC-------CCeEEEEeCCHHHHHHHHHHcCC-----CCCcEEEEccc
Q 026558 37 APLIKLYVPSHH-QRILIVGCGNSAFSEGMVDDG-------YEDVVNVDISSVVIEAMMKKYSN-----RPQLKYIKMDV 103 (237)
Q Consensus 37 ~~~l~~~~~~~~-~~iLdlG~G~G~~~~~~~~~~-------~~~~~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~d~ 103 (237)
.+++-..+.+.. .++||++||||.++..+.++- ..+|+.+||||+|++.++++... ...+.++.+|+
T Consensus 89 Kd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA 168 (296)
T KOG1540|consen 89 KDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA 168 (296)
T ss_pred HHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc
Confidence 444444444444 499999999999999888752 25899999999999999999832 23488999999
Q ss_pred cccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCch-hhhhcc
Q 026558 104 RQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI-YRLGML 168 (237)
Q Consensus 104 ~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~-~~~~~~ 168 (237)
.++| |++.+||..++.+.+... .++.+.+++++|+|||||++.+..++... ....++
T Consensus 169 E~Lp-Fdd~s~D~yTiafGIRN~-------th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~f 226 (296)
T KOG1540|consen 169 EDLP-FDDDSFDAYTIAFGIRNV-------THIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWF 226 (296)
T ss_pred ccCC-CCCCcceeEEEecceecC-------CCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHH
Confidence 9999 999999999999988887 88899999999999999999999987755 344554
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.4e-16 Score=130.02 Aligned_cols=101 Identities=25% Similarity=0.337 Sum_probs=86.8
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHH--cC-CCCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKK--YS-NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~--~~-~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
++|||||||+|.++..+++.+...|+|+|+|+.++..++.. .. ...++.++.+|+.+++ + .+.||+|+|..+++|
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp-~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLP-A-LKAFDTVFSMGVLYH 201 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCC-C-cCCcCEEEECChhhc
Confidence 49999999999999999998866899999999998765432 22 2357899999999987 5 788999999999999
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
. .+...++++++++|+|||.+++.+.
T Consensus 202 ~-------~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 202 R-------RSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred c-------CCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 8 7788999999999999999998653
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.68 E-value=4e-16 Score=118.38 Aligned_cols=110 Identities=29% Similarity=0.559 Sum_probs=88.0
Q ss_pred cChHHHHHhhCC--CCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccC
Q 026558 34 PSLAPLIKLYVP--SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQT 111 (237)
Q Consensus 34 ~~~~~~l~~~~~--~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~ 111 (237)
..+.+.+..+.+ ....+|||+|||+|.++..+++.+. +++|+|+++.+++. .+......+..... .++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~--------~~~~~~~~~~~~~~-~~~ 76 (161)
T PF13489_consen 7 RAYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK--------RNVVFDNFDAQDPP-FPD 76 (161)
T ss_dssp HCHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH--------TTSEEEEEECHTHH-CHS
T ss_pred HHHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh--------hhhhhhhhhhhhhh-ccc
Confidence 345556665552 3334999999999999999988887 99999999999988 23344444444443 568
Q ss_pred CCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
++||+|++..+++|+ .+...+++++.++|+|||++++.+...
T Consensus 77 ~~fD~i~~~~~l~~~-------~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 77 GSFDLIICNDVLEHL-------PDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp SSEEEEEEESSGGGS-------SHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred cchhhHhhHHHHhhc-------ccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 899999999999999 789999999999999999999998654
|
... |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.6e-16 Score=128.32 Aligned_cols=104 Identities=21% Similarity=0.337 Sum_probs=84.2
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||||||+|.++..++++..++|+|+.+|+++.+.+++++... ..+++...|..+++ .+||.|++..+++|
T Consensus 64 ~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~----~~fD~IvSi~~~Eh 139 (273)
T PF02353_consen 64 DRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP----GKFDRIVSIEMFEH 139 (273)
T ss_dssp -EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------S-SEEEEESEGGG
T ss_pred CEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC----CCCCEEEEEechhh
Confidence 499999999999999999984359999999999999999998532 36889999998876 39999999999999
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
+ +.++...+++.+.++|+|||++++.+...+
T Consensus 140 v-----g~~~~~~~f~~~~~~LkpgG~~~lq~i~~~ 170 (273)
T PF02353_consen 140 V-----GRKNYPAFFRKISRLLKPGGRLVLQTITHR 170 (273)
T ss_dssp T-----CGGGHHHHHHHHHHHSETTEEEEEEEEEE-
T ss_pred c-----ChhHHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 9 778899999999999999999998765443
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=123.93 Aligned_cols=105 Identities=16% Similarity=0.272 Sum_probs=88.7
Q ss_pred CCCCCcEEEEccCCchhHHHHHHcC---CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEE
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDDG---YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVV 118 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~~---~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~ 118 (237)
.++. +|||+|||+|.++..+++.. ..+++|+|+|+.|++.|++++.. ..+++++++|+.+.+ + ..+|+|+
T Consensus 52 ~~~~-~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~-~--~~~d~v~ 127 (239)
T TIGR00740 52 TPDS-NVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-I--KNASMVI 127 (239)
T ss_pred CCCC-EEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-C--CCCCEEe
Confidence 3444 89999999999999998752 35899999999999999998753 236899999998876 4 3589999
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+..+++++ +..+...+++++.++|+|||.+++...
T Consensus 128 ~~~~l~~~-----~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 128 LNFTLQFL-----PPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred eecchhhC-----CHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 99999988 556788999999999999999999864
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.9e-16 Score=128.35 Aligned_cols=101 Identities=24% Similarity=0.313 Sum_probs=84.8
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHH---HcCCCCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMK---KYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~---~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..++..+...++|+|+|+.++..++. ......++.+..+++.+++ . ...||+|++.++++|
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp-~-~~~FD~V~s~gvL~H 200 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLH-E-LYAFDTVFSMGVLYH 200 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCC-C-CCCcCEEEEcchhhc
Confidence 4999999999999999988876589999999999876432 2233357788888888886 3 358999999999999
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+ .+...+|++++++|+|||.+++.+.
T Consensus 201 ~-------~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 201 R-------KSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred c-------CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 8 7788999999999999999998764
|
Known examples to date are restricted to the proteobacteria. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.2e-16 Score=123.66 Aligned_cols=88 Identities=19% Similarity=0.231 Sum_probs=78.6
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~ 128 (237)
.+|||+|||||.++..+++....+++|+|+|++|++.|+++. .++++|+.+++ +++++||+|++..+++++
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~------~~~~~d~~~lp-~~d~sfD~v~~~~~l~~~-- 123 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD------DKVVGSFEALP-FRDKSFDVVMSSFALHAS-- 123 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc------ceEEechhhCC-CCCCCEEEEEecChhhcc--
Confidence 499999999999999998874249999999999999998763 45788999988 889999999999999988
Q ss_pred CCCChHHHHHHHHHHHHhcCCC
Q 026558 129 GSNSRQNATQMLKEVWRVLKDK 150 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pg 150 (237)
.+....++++.|+|+|.
T Consensus 124 -----~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 124 -----DNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred -----CCHHHHHHHHHHHhcCc
Confidence 78899999999999994
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=123.13 Aligned_cols=102 Identities=25% Similarity=0.453 Sum_probs=90.6
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||+|||+|.++..+++.+ ..+++++|+++.+++.++++.. +++.++.+|+.+.+ +++++||+|++..++++.
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~~~~~~d~~~~~-~~~~~fD~vi~~~~l~~~- 111 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--ENVQFICGDAEKLP-LEDSSFDLIVSNLALQWC- 111 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--CCCeEEecchhhCC-CCCCceeEEEEhhhhhhc-
Confidence 489999999999999999886 3478999999999999998875 37889999999887 778899999999999988
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.+...+++++.++|+|||.+++.++..
T Consensus 112 ------~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 112 ------DDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred ------cCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 778899999999999999999877544
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-15 Score=117.44 Aligned_cols=117 Identities=9% Similarity=0.129 Sum_probs=87.4
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..++..+ ..+++++|+|+.+++.++++.+ +..+++++++|+.++. ..++||+|+++. ++
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~--~~~~fD~I~s~~-~~- 119 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ--HEEQFDVITSRA-LA- 119 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc--ccCCccEEEehh-hh-
Confidence 499999999999999988765 3489999999999999888764 2347999999998864 367899999975 33
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchhhhhcc-cCCCCceEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGML-RDSCSWNIKL 178 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~-~~~~~w~~~~ 178 (237)
+...+++.+.++|+|||++++............+ .....|.+..
T Consensus 120 ---------~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~ 164 (181)
T TIGR00138 120 ---------SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEP 164 (181)
T ss_pred ---------CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceE
Confidence 3466888899999999999987644433333333 2333444443
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-16 Score=125.48 Aligned_cols=100 Identities=29% Similarity=0.474 Sum_probs=85.6
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCC----C----cEEEEccccccccccCCCccEEEec
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRP----Q----LKYIKMDVRQMDEFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~----~----~~~~~~d~~~~~~~~~~~fD~I~~~ 120 (237)
.+|||+|||+|.++..+++.|. .|+|+|+++.+++.|++.....| + +++.+.|+.... +.||+|+|.
T Consensus 91 ~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~----~~fDaVvcs 165 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT----GKFDAVVCS 165 (282)
T ss_pred ceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc----cccceeeeH
Confidence 3799999999999999999985 99999999999999999964322 2 445555665553 459999999
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.+++|+ .++..+++.+.+.|+|||++++.+..+
T Consensus 166 evleHV-------~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 166 EVLEHV-------KDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHHHH-------hCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 999999 999999999999999999999988544
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-15 Score=121.07 Aligned_cols=104 Identities=21% Similarity=0.423 Sum_probs=90.4
Q ss_pred CcEEEEccCCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~--~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|..+..+++.+. .+++++|+++.+++.+++++.. ..++.+..+|+.+.+ +..+.||+|++..++
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~I~~~~~l 131 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP-FPDNSFDAVTIAFGL 131 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC-CCCCCccEEEEeccc
Confidence 4999999999999999988763 6999999999999999998753 246889999998876 667889999999898
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
++. .+...+++++.++|+|||.+++.+...
T Consensus 132 ~~~-------~~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 132 RNV-------PDIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred ccC-------CCHHHHHHHHHHhccCCcEEEEEEecC
Confidence 887 678899999999999999998876544
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-15 Score=115.59 Aligned_cols=161 Identities=20% Similarity=0.266 Sum_probs=111.6
Q ss_pred CCCCCCCCCChh-hhHHHhccCCC---CceeecCCcChHHHHHhhCCCC-CCcEEEEccCCchhHHHHHHcCCCeEEEEe
Q 026558 3 MGTTTQAYGEPW-YWDNRYAHESG---PFDWYQKYPSLAPLIKLYVPSH-HQRILIVGCGNSAFSEGMVDDGYEDVVNVD 77 (237)
Q Consensus 3 ~~~~~~~~~~~~-~w~~~y~~~~~---~~~~~~~~~~~~~~l~~~~~~~-~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD 77 (237)
|+.+|++-.+.+ ||+......-. .+..++.-...+.+.-..++.+ +.-|||||||+|..+..+.+.|+ ..+|+|
T Consensus 1 m~~rPEh~~PpelfYnd~eA~kYt~nsri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvD 79 (270)
T KOG1541|consen 1 MSVRPEHGAPPELFYNDTEAPKYTQNSRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH-QWIGVD 79 (270)
T ss_pred CCcCccccCCcceeechhhhhhccccceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc-eEEeec
Confidence 566777766655 44433332211 1222222222222222233332 34899999999999999999986 999999
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec----cCCCChHHHHHHHHHHHHhcCCCcEE
Q 026558 78 ISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL----CGSNSRQNATQMLKEVWRVLKDKGVY 153 (237)
Q Consensus 78 ~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~----~~~~~~~~~~~~l~~~~~~L~pgG~l 153 (237)
||+.|++.|.++-- .-+++.+|+-+..+|..+.||-+++...++++. +++++...+..++..++.+|++|++.
T Consensus 80 iSpsML~~a~~~e~---egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~ra 156 (270)
T KOG1541|consen 80 ISPSMLEQAVEREL---EGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARA 156 (270)
T ss_pred CCHHHHHHHHHhhh---hcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCcee
Confidence 99999999997531 236788888764449999999999998887763 33456667788999999999999999
Q ss_pred EEEEcCCchhhhhc
Q 026558 154 ILVTYGAPIYRLGM 167 (237)
Q Consensus 154 ~~~~~~~~~~~~~~ 167 (237)
+++.+.........
T Consensus 157 V~QfYpen~~q~d~ 170 (270)
T KOG1541|consen 157 VLQFYPENEAQIDM 170 (270)
T ss_pred EEEecccchHHHHH
Confidence 99998776554333
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.4e-17 Score=112.85 Aligned_cols=95 Identities=24% Similarity=0.495 Sum_probs=63.3
Q ss_pred EEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCC--CcEEEEccccccccc-cCCCccEEEeccccceec
Q 026558 52 LIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRP--QLKYIKMDVRQMDEF-QTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 52 LdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~-~~~~fD~I~~~~~l~~~~ 127 (237)
||+|||+|.++..+++.. ..+++++|+|+.+++.+++++.... +......+..+.... ..++||+|++..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 799999999999998884 3499999999999988888875322 333444443333211 23699999999999999
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEE
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVY 153 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l 153 (237)
++...+++++.++|+|||++
T Consensus 80 ------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ------S-HHHHHHHHTTT-TSS-EE
T ss_pred ------hhHHHHHHHHHHHcCCCCCC
Confidence 88899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=7e-15 Score=126.42 Aligned_cols=102 Identities=25% Similarity=0.419 Sum_probs=87.3
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~ 128 (237)
.+|||||||+|.++..+++....+++|+|+|+++++.|+++..+ .++++...|..++ .++||.|++..+++|+
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~-l~v~~~~~D~~~l----~~~fD~Ivs~~~~ehv-- 241 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG-LPVEIRLQDYRDL----NGQFDRIVSVGMFEHV-- 241 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc-CeEEEEECchhhc----CCCCCEEEEeCchhhC--
Confidence 49999999999999999887545999999999999999999854 3577888887655 3689999999999988
Q ss_pred CCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 129 GSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+..+...+++++.++|+|||++++.+...
T Consensus 242 ---g~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 242 ---GPKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred ---ChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 55677899999999999999999987544
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.8e-15 Score=121.45 Aligned_cols=102 Identities=16% Similarity=0.280 Sum_probs=87.0
Q ss_pred CcEEEEccCCchhHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-~~-~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|..+..+++. +. .+++++|+++.+++.|+++.. +..++++..+|+.+++ +++++||+|+++.+++
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~-~~~~~fD~Vi~~~v~~ 157 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP-VADNSVDVIISNCVIN 157 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC-CCCCceeEEEEcCccc
Confidence 39999999999988777664 32 379999999999999999863 3357889999998887 7778999999999998
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+. .+...++++++++|+|||++++...
T Consensus 158 ~~-------~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 158 LS-------PDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred CC-------CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 77 6678899999999999999998764
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.2e-15 Score=120.14 Aligned_cols=103 Identities=17% Similarity=0.246 Sum_probs=84.4
Q ss_pred CcEEEEccCCch----hHHHHHHcC------CCeEEEEeCCHHHHHHHHHHcCC--------------------------
Q 026558 49 QRILIVGCGNSA----FSEGMVDDG------YEDVVNVDISSVVIEAMMKKYSN-------------------------- 92 (237)
Q Consensus 49 ~~iLdlG~G~G~----~~~~~~~~~------~~~~~~vD~s~~~~~~a~~~~~~-------------------------- 92 (237)
.+|+|+|||+|. +++.+++.+ ..+++|+|+|+.+++.|++..-.
T Consensus 101 ~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~ 180 (264)
T smart00138 101 VRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVK 180 (264)
T ss_pred EEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEC
Confidence 389999999996 444555532 23899999999999999986410
Q ss_pred ---CCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 93 ---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 93 ---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
..++.|.+.|+.+.+ ++.++||+|+|.++++++ +......+++++.++|+|||.+++..
T Consensus 181 ~~ir~~V~F~~~dl~~~~-~~~~~fD~I~crnvl~yf-----~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 181 PELKERVRFAKHNLLAES-PPLGDFDLIFCRNVLIYF-----DEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred hHHhCcCEEeeccCCCCC-CccCCCCEEEechhHHhC-----CHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 126889999998876 567899999999999998 66778899999999999999998864
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.7e-15 Score=112.89 Aligned_cols=106 Identities=25% Similarity=0.310 Sum_probs=90.8
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--CCCcE-EEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLK-YIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~~~~~-~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
..|||+|||||..-.+.-.....+++++|.++.|-+.+.+.+.. ..++. |+.++..++++++++++|.|++..+|..
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCS 157 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCS 157 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEec
Confidence 47899999999886665544345999999999999999988843 23665 9999999999889999999999999887
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
. +++.+.|+++.|+|+|||++++......
T Consensus 158 v-------e~~~k~L~e~~rlLRpgG~iifiEHva~ 186 (252)
T KOG4300|consen 158 V-------EDPVKQLNEVRRLLRPGGRIIFIEHVAG 186 (252)
T ss_pred c-------CCHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 7 8999999999999999999999886553
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-14 Score=114.76 Aligned_cols=107 Identities=27% Similarity=0.477 Sum_probs=92.2
Q ss_pred CCCcEEEEccCCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 47 HHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 47 ~~~~iLdlG~G~G~~~~~~~~~~~--~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
+..+|||+|||+|.++..+++... .+++++|+++.+++.++++.....++.+..+|+.+.+ +..+.||+|++...++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALP-FEDNSFDAVTIAFGLR 117 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCC-CCCCcEEEEEEeeeeC
Confidence 334999999999999999988864 4899999999999999998763357899999998877 6677899999998888
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
++ .+...+++++.+.|+|||++++.....+
T Consensus 118 ~~-------~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 147 (223)
T TIGR01934 118 NV-------TDIQKALREMYRVLKPGGRLVILEFSKP 147 (223)
T ss_pred Cc-------ccHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence 87 6788999999999999999998876443
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.8e-14 Score=109.81 Aligned_cols=108 Identities=18% Similarity=0.254 Sum_probs=85.4
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||+|||+|.++..+++.+. +++++|+|+.+++.+++++.. ..+++++.+|+.+.. .++||+|+++.++++..
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV---RGKFDVILFNPPYLPLE 96 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc---CCcccEEEECCCCCCCc
Confidence 4899999999999999999876 899999999999999998742 236788888987653 45899999998876541
Q ss_pred cCC--------------CChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 128 CGS--------------NSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 128 ~~~--------------~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
... .+......+++++.++|+|||.+++.....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 110 112235778999999999999998877544
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.2e-14 Score=110.35 Aligned_cols=96 Identities=14% Similarity=0.145 Sum_probs=77.9
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++.+ ..+++++|+++.+++.|+++.. +..+++++.+|+... + .++||+|++....++
T Consensus 33 ~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~--~-~~~~D~v~~~~~~~~ 109 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE--L-PGKADAIFIGGSGGN 109 (187)
T ss_pred CEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh--c-CcCCCEEEECCCccC
Confidence 499999999999999998875 3599999999999999998874 234688888887432 2 467999998765433
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...+++.+.+.|+|||++++..
T Consensus 110 ----------~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 110 ----------LTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred ----------HHHHHHHHHHhcCCCeEEEEEE
Confidence 3668899999999999998865
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-14 Score=116.20 Aligned_cols=102 Identities=25% Similarity=0.455 Sum_probs=88.9
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC-CCCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++.. ..+++++|+++.+++.++++.. ...++.+...|+...+ ++.+.||+|++..++++
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~~~~ 99 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP-FPDGSFDAVRSDRVLQH 99 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC-CCCCCceEEEEechhhc
Confidence 499999999999999998864 3589999999999999998843 2357889999998876 67789999999999999
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+ .+...+++++.++|+|||.+++...
T Consensus 100 ~-------~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 100 L-------EDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred c-------CCHHHHHHHHHHHhcCCcEEEEEec
Confidence 8 7788999999999999999988663
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.9e-15 Score=123.03 Aligned_cols=101 Identities=25% Similarity=0.303 Sum_probs=87.5
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||+|||+|.++..+++.. ..+++++|+|+.+++.|+++... .+++++.+|+.+++ ++++.||+|++..+++++
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~-~~i~~i~gD~e~lp-~~~~sFDvVIs~~~L~~~- 191 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIIEGDAEDLP-FPTDYADRYVSAGSIEYW- 191 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc-cCCeEEeccHHhCC-CCCCceeEEEEcChhhhC-
Confidence 499999999999998887753 34899999999999999998642 57889999999887 778899999999999888
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.+...+++++.++|+|||.+++...
T Consensus 192 ------~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 192 ------PDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred ------CCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 5667899999999999999987653
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-14 Score=110.62 Aligned_cols=106 Identities=23% Similarity=0.378 Sum_probs=84.1
Q ss_pred CcEEEEccCCchhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCC--CCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++.+.. +++++|+++.+++.+++++.. ..+++++..|..+.. +.++||+|+++.+++.
T Consensus 33 ~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~--~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 33 GRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL--PDGKFDLIVSNPPFHA 110 (170)
T ss_dssp CEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC--CTTCEEEEEE---SBT
T ss_pred CeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc--cccceeEEEEccchhc
Confidence 49999999999999999998753 799999999999999999852 234889999987764 4789999999988653
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
- ...+.....++++++.++|+|||.+++...
T Consensus 111 ~--~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 111 G--GDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp T--SHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c--cccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 2 112234678899999999999999977654
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.3e-14 Score=103.12 Aligned_cols=99 Identities=14% Similarity=0.184 Sum_probs=80.2
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++.. ..+++++|+|+.+++.++++.. +..+++++..|+.........+||+|++....+
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~- 99 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGG- 99 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcch-
Confidence 499999999999999999874 3589999999999999998864 235788888887653213346899999976443
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
....+++++.++|+|||.+++..
T Consensus 100 ---------~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 100 ---------LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ---------hHHHHHHHHHHHcCCCCEEEEEe
Confidence 34689999999999999998865
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.1e-14 Score=118.75 Aligned_cols=105 Identities=18% Similarity=0.249 Sum_probs=84.2
Q ss_pred CcEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcCCC-CCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
++|||+|||+|.++..+++... .+++++|+|+.+++.++++++.. ...++...|+... ..++||+|+++.++|..
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~---~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD---IKGRFDMIISNPPFHDG 274 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc---cCCCccEEEECCCccCC
Confidence 4899999999999999998753 48999999999999999987432 2456777777553 25789999999988752
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
..........+++++.++|+|||.++++..
T Consensus 275 --~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 275 --IQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred --ccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 111235678999999999999999988763
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.8e-15 Score=117.65 Aligned_cols=100 Identities=18% Similarity=0.307 Sum_probs=86.5
Q ss_pred cEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 50 RILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
+|||+|||+|..+..+++.. ..+++|+|+|+.+++.+++++.. ..++.+...|+...+ + .++||+|++..++++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~-~-~~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP-F-PDTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC-C-CCCCCEeehHHHHHh
Confidence 79999999999999998875 35899999999999999998742 246889999987665 4 358999999999999
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+ .+...+++++.++|+|||.+++.+.
T Consensus 80 ~-------~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 80 I-------KDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred C-------CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 8 6788999999999999999998764
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=124.07 Aligned_cols=217 Identities=32% Similarity=0.481 Sum_probs=166.7
Q ss_pred CCCCCCCCChhhhHHHhccCC-CCceeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHH
Q 026558 4 GTTTQAYGEPWYWDNRYAHES-GPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVV 82 (237)
Q Consensus 4 ~~~~~~~~~~~~w~~~y~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~ 82 (237)
-.+.-.+++..||+.+|.... ..++|++.+..+...|...+.+..-++|.+|||...+...+.+.|+..++.+|+|+..
T Consensus 4 p~~~~~~~s~~~wd~rf~~rg~~~~ewY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~ 83 (482)
T KOG2352|consen 4 PQEQLSFGSVVYWDKRFQPRGSDPFEWYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVV 83 (482)
T ss_pred cccccccCcchhhhhhccccCCChHHHHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHH
Confidence 345678999999999999884 7799999999988888877655434899999999999999999998899999999999
Q ss_pred HHHHHHHc-CCCCCcEEEEccccccccccCCCccEEEeccccceeccCCCChH---HHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 83 IEAMMKKY-SNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQ---NATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 83 ~~~a~~~~-~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~---~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
++.+..+. ...+...+...|+..+. |++++||+|+..+.+++++++....- .....+.++.|++++||+++.+++
T Consensus 84 V~~m~~~~~~~~~~~~~~~~d~~~l~-fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 84 VAAMQVRNAKERPEMQMVEMDMDQLV-FEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred HHHHHhccccCCcceEEEEecchhcc-CCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 99988887 45567889999999998 99999999999999999988775544 667789999999999999999987
Q ss_pred C--Cchhhh-hcccCCCCceEEEEEeccceecccCCCCCcccccCcccCCCCCchhhhcCCCCCceEEEEEecCC
Q 026558 159 G--APIYRL-GMLRDSCSWNIKLHVIEKLVVEEKSGHPIWELTNPVPLENDGRSVEELLGKNPDVHYIYVCTKDE 230 (237)
Q Consensus 159 ~--~~~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~k~~ 230 (237)
. .|..+. .++-....|........+...- ...-+..+..+....+..+..+..|+++.++++.
T Consensus 163 ~~~vp~~r~~e~~~~~p~G~~~~~~~s~~~~l---------~~v~l~~gq~~~~~~~~~~~~~~s~~~~~l~~~g 228 (482)
T KOG2352|consen 163 VQVVPQGRKPEWLFGSPGGSKQMNVSSSGERL---------AIVALHRGQQYSTPQEDEVQDPLSPFRRQLDPKG 228 (482)
T ss_pred eeeccCCCCeeeeecCccchhhhhhhccCcce---------EEEEeccCccccchHHhhhccccccceeeccccc
Confidence 4 343322 2222233333333332221111 1233445555666667777888999999998876
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=119.40 Aligned_cols=104 Identities=26% Similarity=0.442 Sum_probs=82.5
Q ss_pred HHHhhCCCCCCcEEEEccCCchhHHHHHHcC----CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCc
Q 026558 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDG----YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSF 114 (237)
Q Consensus 39 ~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~----~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~f 114 (237)
.+...+.....+|||+|||+|.++..+++.. ...++|+|+|+.+++.|+++. +++.+.++|+.+++ +++++|
T Consensus 77 ~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---~~~~~~~~d~~~lp-~~~~sf 152 (272)
T PRK11088 77 LLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---PQVTFCVASSHRLP-FADQSL 152 (272)
T ss_pred HHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---CCCeEEEeecccCC-CcCCce
Confidence 3444434333489999999999999988753 137899999999999999876 57899999999988 888999
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
|+|++... ...++++.|+|+|||++++++...
T Consensus 153 D~I~~~~~--------------~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 153 DAIIRIYA--------------PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred eEEEEecC--------------CCCHHHHHhhccCCCEEEEEeCCC
Confidence 99998532 113578999999999999987554
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-14 Score=127.66 Aligned_cols=102 Identities=20% Similarity=0.300 Sum_probs=87.7
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc--cccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ--MDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~--~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+|||+|||+|.++..+++.+. +++|+|+++.+++.+++.....+++.++++|+.. ++ ++.++||+|++..+++++
T Consensus 39 ~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~-~~~~~fD~I~~~~~l~~l 116 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLN-ISDGSVDLIFSNWLLMYL 116 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccC-CCCCCEEEEehhhhHHhC
Confidence 4899999999999999998864 9999999999999887655444678999999964 34 667899999999999998
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+......+++++.++|+|||++++..
T Consensus 117 -----~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 117 -----SDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred -----CHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 45567899999999999999998864
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-13 Score=113.52 Aligned_cols=105 Identities=12% Similarity=0.196 Sum_probs=84.5
Q ss_pred CCCcEEEEccCCchhHHHHH--HcC-CCeEEEEeCCHHHHHHHHHHcCC----CCCcEEEEccccccccccCCCccEEEe
Q 026558 47 HHQRILIVGCGNSAFSEGMV--DDG-YEDVVNVDISSVVIEAMMKKYSN----RPQLKYIKMDVRQMDEFQTGSFDSVVD 119 (237)
Q Consensus 47 ~~~~iLdlG~G~G~~~~~~~--~~~-~~~~~~vD~s~~~~~~a~~~~~~----~~~~~~~~~d~~~~~~~~~~~fD~I~~ 119 (237)
++.+|+|||||.|.++..+. ... .++++|+|+++++++.|++.+.. ..+++|..+|+.+.. ...+.||+|++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~-~~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT-ESLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc-cccCCcCEEEE
Confidence 44599999999885544433 333 34899999999999999999842 247999999998864 23478999999
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
. +++++ ...+..++++++.+.|+|||.+++-..
T Consensus 202 ~-ALi~~-----dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 202 A-ALVGM-----DKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred e-ccccc-----ccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 9 77776 557889999999999999999999873
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=129.99 Aligned_cols=110 Identities=25% Similarity=0.343 Sum_probs=89.7
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEcccccccc-ccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDE-FQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~-~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|..+..+++.. ..+++|+|+|+.|++.|+++... ..++.++++|+.+++. +++++||+|+++.++|+
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~ 499 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHE 499 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHh
Confidence 399999999999998888754 35999999999999999988643 2467888999987653 56789999999999887
Q ss_pred eccCCC------ChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LLCGSN------SRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~~~~~------~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+++..+ +..+...++++++++|||||.+++.+.
T Consensus 500 L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 500 LFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred hhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 632211 346788999999999999999999763
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-14 Score=103.85 Aligned_cols=108 Identities=25% Similarity=0.410 Sum_probs=86.0
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccc-cccCCCccEEEeccccce
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMD-EFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~-~~~~~~fD~I~~~~~l~~ 125 (237)
+|||+|||+|.++..+++.+..+++|+|+++..++.++.++.. ..+++++++|+.+.. .++.++||+|+++.++..
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~ 82 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYGP 82 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STTS
T ss_pred EEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCcc
Confidence 8999999999999999999845999999999999999999852 247899999998865 366899999999988764
Q ss_pred eccC-CCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 126 LLCG-SNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 126 ~~~~-~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.... .........+++++.++|+|||.+++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 83 RSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp BTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 3111 1122356789999999999999999876
|
... |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-14 Score=112.89 Aligned_cols=112 Identities=18% Similarity=0.151 Sum_probs=84.7
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccc-ccccc-ccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDV-RQMDE-FQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~-~~~~~-~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|..+..+++.. ..+++|+|+|+.+++.|++++. +.+++.++++|+ ..++. ++.++||+|++..+.
T Consensus 42 ~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~ 121 (202)
T PRK00121 42 PIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPD 121 (202)
T ss_pred CeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECCC
Confidence 499999999999999998864 3489999999999999998874 335799999999 55542 457789999987543
Q ss_pred ceeccCC-CChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 124 DSLLCGS-NSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 124 ~~~~~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.+..... ........+++++.++|+|||++++.+...
T Consensus 122 p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~ 159 (202)
T PRK00121 122 PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE 159 (202)
T ss_pred CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH
Confidence 2210000 011125779999999999999999887443
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.6e-14 Score=120.22 Aligned_cols=145 Identities=17% Similarity=0.176 Sum_probs=99.3
Q ss_pred CChhhhHHHhccCCCCceeecCCcC---hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHH
Q 026558 11 GEPWYWDNRYAHESGPFDWYQKYPS---LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAM 86 (237)
Q Consensus 11 ~~~~~w~~~y~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a 86 (237)
+.+.||...+...++.+. +.+. +.+.+...+.++. +|||+|||+|.++..++... ..+++++|+|+.+++.|
T Consensus 216 G~~~F~G~~f~V~p~vLI---PRpeTE~LVe~aL~~l~~~~-rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~A 291 (423)
T PRK14966 216 GVREFYGRRFAVNPNVLI---PRPETEHLVEAVLARLPENG-RVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETA 291 (423)
T ss_pred eeeeecCcEEEeCCCccC---CCccHHHHHHHhhhccCCCC-EEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHH
Confidence 344566655555544433 3333 3333323333343 89999999999999988753 45899999999999999
Q ss_pred HHHcCC-CCCcEEEEccccccccccCCCccEEEeccccce------------------eccCCCChHHHHHHHHHHHHhc
Q 026558 87 MKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS------------------LLCGSNSRQNATQMLKEVWRVL 147 (237)
Q Consensus 87 ~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~------------------~~~~~~~~~~~~~~l~~~~~~L 147 (237)
+++... ..++.++++|+.+......++||+|+++.+... +..+.++.+....+++.+.+.|
T Consensus 292 reNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~L 371 (423)
T PRK14966 292 RKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRL 371 (423)
T ss_pred HHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhc
Confidence 999853 237889999986643112457999999876421 1122345556778999999999
Q ss_pred CCCcEEEEEEcC
Q 026558 148 KDKGVYILVTYG 159 (237)
Q Consensus 148 ~pgG~l~~~~~~ 159 (237)
+|||.+++....
T Consensus 372 kpgG~lilEiG~ 383 (423)
T PRK14966 372 AEGGFLLLEHGF 383 (423)
T ss_pred CCCcEEEEEECc
Confidence 999998876543
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.7e-14 Score=120.33 Aligned_cols=117 Identities=19% Similarity=0.261 Sum_probs=89.4
Q ss_pred HHHHHhhCCCC-CCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC-----CCCcEEEEccccccccc
Q 026558 37 APLIKLYVPSH-HQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN-----RPQLKYIKMDVRQMDEF 109 (237)
Q Consensus 37 ~~~l~~~~~~~-~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~d~~~~~~~ 109 (237)
.+++...++.. .++|||+|||+|.++..+++.+ ..+++++|+|+.+++.|+++++. ..++++...|+... +
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~--~ 294 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG--V 294 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc--C
Confidence 34444455443 2489999999999999999876 35999999999999999998731 12678888887654 3
Q ss_pred cCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 110 QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 110 ~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+..+||+|+|+.++|.... .+.....++++.+.++|+|||.++++.
T Consensus 295 ~~~~fDlIlsNPPfh~~~~--~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 295 EPFRFNAVLCNPPFHQQHA--LTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCCCEEEEEECcCcccCcc--CCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 4568999999988875310 123456789999999999999999885
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=111.53 Aligned_cols=104 Identities=13% Similarity=0.211 Sum_probs=83.0
Q ss_pred CcEEEEccCCchhHHHHHHc----C-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDD----G-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~----~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|.++..+++. + ..+++|+|+|+.+++.|+++... .++.+...+...++ ..+++||+|+++.++
T Consensus 62 ~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~l~-~~~~~fD~V~~~~~l 139 (232)
T PRK06202 62 LTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-PGVTFRQAVSDELV-AEGERFDVVTSNHFL 139 (232)
T ss_pred cEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-CCCeEEEEeccccc-ccCCCccEEEECCee
Confidence 48999999999998888752 3 24899999999999999988643 45777777776666 457899999999999
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
||+ +......+++++.++++ |.+++.++..+
T Consensus 140 hh~-----~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 140 HHL-----DDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred ecC-----ChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 999 44456789999999998 66666665554
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.1e-13 Score=106.02 Aligned_cols=99 Identities=16% Similarity=0.207 Sum_probs=77.3
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc---cccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD---EFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~---~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++.. ...|+++|+++.|++.+.+++....|+.++.+|+.+.. .+ .++||+|++...
T Consensus 74 ~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~i~~d~~-- 150 (226)
T PRK04266 74 SKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDVIYQDVA-- 150 (226)
T ss_pred CEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCEEEECCC--
Confidence 499999999999999998864 34899999999999988777655568999999987531 12 356999996532
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+.....+++++.++|||||.+++..
T Consensus 151 -------~p~~~~~~L~~~~r~LKpGG~lvI~v 176 (226)
T PRK04266 151 -------QPNQAEIAIDNAEFFLKDGGYLLLAI 176 (226)
T ss_pred -------ChhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 11334557899999999999999853
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-13 Score=114.11 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=84.8
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC--C-CCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN--R-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~--~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++.. ..+++++|+|+.+++.|+++... . .++.++++|+.+. ++.++||+|+++.+..
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~--~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA--LPGRKYDLIVSNPPYV 200 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc--cCCCCccEEEECCCCC
Confidence 489999999999999999875 35999999999999999999852 2 3689999998654 3456899999986532
Q ss_pred ee------------------ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 125 SL------------------LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 125 ~~------------------~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
.. ..+..+......+++.+.++|+|||.+++....
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 10 111233455678999999999999999887643
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=112.57 Aligned_cols=108 Identities=20% Similarity=0.273 Sum_probs=83.7
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++.. ...++|+|+++.+++.|+++.. +..++.+.++|+.+. ++.++||+|+++.++..
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~--~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP--LPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc--CcCCceeEEEECCCCCc
Confidence 489999999999999999874 3499999999999999999874 334689999998763 45688999999876542
Q ss_pred ec-------------------cCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LL-------------------CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~-------------------~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.. .+..+......+++++.++|+|||.+++...
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 10 0111123345789999999999999988753
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-13 Score=107.47 Aligned_cols=95 Identities=18% Similarity=0.195 Sum_probs=77.2
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCC--C-CCcEEEEccccccccccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSN--R-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~--~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|..+..+++.. ..+++++|+++.+++.|++++.. . .++++..+|+.+.. ....+||+|++...+
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~-~~~~~fD~Ii~~~~~ 152 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL-EKHAPFDAIIVTAAA 152 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC-ccCCCccEEEEccCc
Confidence 499999999999998888753 24899999999999999998742 2 25889999998754 345789999998877
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.++ .+++.+.|+|||++++..
T Consensus 153 ~~~-------------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 153 STI-------------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred chh-------------hHHHHHhcCcCcEEEEEE
Confidence 655 246889999999998765
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.5e-14 Score=108.96 Aligned_cols=112 Identities=23% Similarity=0.286 Sum_probs=84.7
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccc--ccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDE--FQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~--~~~~~fD~I~~~~~l 123 (237)
.+|||||||+|.++..+++.. ...++|+|+++.+++.|+++.. +..+++++++|+.+++. ++.+.+|.|+++.+.
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pd 97 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFPD 97 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECCC
Confidence 399999999999999999875 3489999999999999998864 34589999999987542 345689999987553
Q ss_pred ceeccCCC--ChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 124 DSLLCGSN--SRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 124 ~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
.+. .... ..-....+++++.++|+|||.+++.+....
T Consensus 98 pw~-k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~ 136 (194)
T TIGR00091 98 PWP-KKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP 136 (194)
T ss_pred cCC-CCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence 322 0000 001125789999999999999999885443
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-13 Score=108.63 Aligned_cols=97 Identities=23% Similarity=0.366 Sum_probs=81.6
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++.+. +++|+|+|+.+++.|+++.... .++.+.++|+.+.+ ++||+|++..++++
T Consensus 57 ~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 57 KRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC----GEFDIVVCMDVLIH 131 (219)
T ss_pred CEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC----CCcCEEEEhhHHHh
Confidence 4999999999999999998865 9999999999999999987422 37889999987764 78999999988887
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 155 (237)
+ +......+++++.+++++++++.+
T Consensus 132 ~-----~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 132 Y-----PASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred C-----CHHHHHHHHHHHHHHhCCCEEEEE
Confidence 7 556778899999999987655544
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-13 Score=109.64 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=82.9
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||+|||+|.++..+++.+..+++++|+++.+++.+++++.. ..++.++.+|+.+. ++.++||+|+++.++....
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~--~~~~~fD~Vi~npPy~~~~ 115 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA--VEFRPFDVVVSNPPYVPAP 115 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh--ccCCCeeEEEECCCCCCCC
Confidence 49999999999999999887645999999999999999988742 23577888888764 3567899999986543210
Q ss_pred --------------cCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 128 --------------CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 128 --------------~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.+..+......+++++.++|+|||++++...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 116 PDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred cccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 0111223467789999999999999988653
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.8e-13 Score=107.25 Aligned_cols=106 Identities=13% Similarity=0.104 Sum_probs=81.5
Q ss_pred HHHHhhCCCCCCcEEEEccCCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCC
Q 026558 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 38 ~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~--~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~ 113 (237)
.++.........+|||+|||+|.++..+++... .+++++|+++.+++.|++++. +..+++++.+|+.+.. .....
T Consensus 68 ~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~-~~~~~ 146 (215)
T TIGR00080 68 MMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW-EPLAP 146 (215)
T ss_pred HHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC-cccCC
Confidence 344433333334999999999999999988753 369999999999999999984 3357899999997754 33468
Q ss_pred ccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 114 fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
||+|++.....++ .+.+.+.|+|||++++..
T Consensus 147 fD~Ii~~~~~~~~-------------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 147 YDRIYVTAAGPKI-------------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCEEEEcCCcccc-------------cHHHHHhcCcCcEEEEEE
Confidence 9999988665444 345788999999998865
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.3e-13 Score=106.63 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=80.9
Q ss_pred HHHhhCCCCCCcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCc
Q 026558 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSF 114 (237)
Q Consensus 39 ~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~f 114 (237)
++......+..+|||+|||+|..+..+++.. ..+++++|+++++++.+++++. +..+++++.+|..... ...+.|
T Consensus 68 ~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~-~~~~~f 146 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY-EENAPY 146 (212)
T ss_pred HHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC-CcCCCc
Confidence 3433333333499999999999998888763 2499999999999999999985 3357999999987754 456789
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
|+|++......+ .+.+.+.|+|||++++..
T Consensus 147 D~I~~~~~~~~~-------------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 147 DRIYVTAAGPDI-------------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CEEEECCCcccc-------------hHHHHHhhCCCcEEEEEE
Confidence 999997665443 245677899999988864
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-13 Score=113.27 Aligned_cols=105 Identities=21% Similarity=0.254 Sum_probs=80.1
Q ss_pred HhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccccccCCCccEE
Q 026558 41 KLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSV 117 (237)
Q Consensus 41 ~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~I 117 (237)
.....++ .+|||+|||+|.++..+++.+..+++++|+++.+++.|+++.... ..+.+...+... ...++||+|
T Consensus 154 ~~~~~~g-~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~---~~~~~fDlV 229 (288)
T TIGR00406 154 EDLDLKD-KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ---PIEGKADVI 229 (288)
T ss_pred HhhcCCC-CEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc---ccCCCceEE
Confidence 3333444 499999999999999998887669999999999999999987421 234455554322 335789999
Q ss_pred EeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+++... .....++.++.++|+|||.+++....
T Consensus 230 van~~~----------~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 230 VANILA----------EVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred EEecCH----------HHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 997543 34467899999999999999987653
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-13 Score=107.61 Aligned_cols=144 Identities=21% Similarity=0.270 Sum_probs=105.9
Q ss_pred ChhhhHHHhccCCCCceeecCCcChHHHHHhhCCC-CC--CcEEEEccCCchhHHHHHHcCC---CeEEEEeCCHHHHHH
Q 026558 12 EPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPS-HH--QRILIVGCGNSAFSEGMVDDGY---EDVVNVDISSVVIEA 85 (237)
Q Consensus 12 ~~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~-~~--~~iLdlG~G~G~~~~~~~~~~~---~~~~~vD~s~~~~~~ 85 (237)
.+.||+..|......+= ..+.- +.+-+..+.+. .. .+||++|||.|.....+++... -.++++|.||.+++.
T Consensus 35 ~~k~wD~fy~~~~~rFf-kdR~w-L~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~ 112 (264)
T KOG2361|consen 35 ASKYWDTFYKIHENRFF-KDRNW-LLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIEL 112 (264)
T ss_pred hhhhhhhhhhhcccccc-chhHH-HHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHH
Confidence 45699999998877641 11111 11111122211 11 2799999999999988887642 389999999999999
Q ss_pred HHHHcCCC-CCcEEEEccccccc---cccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 86 MMKKYSNR-PQLKYIKMDVRQMD---EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 86 a~~~~~~~-~~~~~~~~d~~~~~---~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
.+++.... .++.....|+.... ....+++|+|++..+|..+ +++.....++++.++|||||.+++-+++.-
T Consensus 113 vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi-----~pek~~~a~~nl~~llKPGG~llfrDYg~~ 187 (264)
T KOG2361|consen 113 VKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAI-----HPEKMQSVIKNLRTLLKPGGSLLFRDYGRY 187 (264)
T ss_pred HHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEecc-----ChHHHHHHHHHHHHHhCCCcEEEEeecccc
Confidence 99987532 35555556665422 2567899999999999999 889999999999999999999999998774
Q ss_pred h
Q 026558 162 I 162 (237)
Q Consensus 162 ~ 162 (237)
.
T Consensus 188 D 188 (264)
T KOG2361|consen 188 D 188 (264)
T ss_pred h
Confidence 4
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.2e-13 Score=103.99 Aligned_cols=99 Identities=18% Similarity=0.288 Sum_probs=78.8
Q ss_pred CcEEEEccCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-~-~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|.++..++.. + ..+++++|+++.+++.++++... ..++.++.+|+.+......+.||+|++....
T Consensus 42 ~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~~ 121 (198)
T PRK00377 42 DMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGGS 121 (198)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCCc
Confidence 49999999999999998765 2 34899999999999999988742 2478888999876431234689999985422
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.....+++.+.++|+|||++++..
T Consensus 122 ----------~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 122 ----------EKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred ----------ccHHHHHHHHHHHcCCCcEEEEEe
Confidence 455789999999999999998744
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.50 E-value=3e-13 Score=110.07 Aligned_cols=110 Identities=11% Similarity=0.087 Sum_probs=83.3
Q ss_pred cEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc-cccCCCccEEEecccccee-
Q 026558 50 RILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD-EFQTGSFDSVVDKGTLDSL- 126 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~~~fD~I~~~~~l~~~- 126 (237)
+|||+|||+|.++..+++.. ..+++++|+|+.+++.|++++... +.+++++|+.+.. ....++||+|+++.+....
T Consensus 89 ~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~-~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~ 167 (251)
T TIGR03704 89 VVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA-GGTVHEGDLYDALPTALRGRVDILAANAPYVPTD 167 (251)
T ss_pred EEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCEEEEeechhhcchhcCCCEeEEEECCCCCCch
Confidence 89999999999999998764 348999999999999999998532 3588999987642 1113579999999765311
Q ss_pred ------------------ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 127 ------------------LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 127 ------------------~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
..+.++.+....+++.+.++|+|||.+++.....
T Consensus 168 ~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~ 219 (251)
T TIGR03704 168 AIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER 219 (251)
T ss_pred hhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence 1122334456789999999999999999877543
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.8e-13 Score=111.12 Aligned_cols=108 Identities=19% Similarity=0.260 Sum_probs=85.0
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..++... ..+++++|+|+.+++.|++++. ...++.++.+|+.+.. ..++||+|+++.++..
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~--~~~~fD~Iv~npPy~~ 187 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL--PGGRFDLIVSNPPYIP 187 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC--CCCceeEEEECCCcCC
Confidence 489999999999999999875 3599999999999999999975 2347899999986543 3578999999765321
Q ss_pred e-------------------ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 L-------------------LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~-------------------~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
. +.+..+......+++++.++|+|||.+++...
T Consensus 188 ~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g 239 (275)
T PRK09328 188 EADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG 239 (275)
T ss_pred cchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 1 11223445678899999999999999988653
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-13 Score=112.88 Aligned_cols=110 Identities=18% Similarity=0.205 Sum_probs=85.6
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC--C-CCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN--R-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~--~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..++... ..+++++|+|+.+++.|++++.. . .++.++++|+.+. ++.++||+|+++.+..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~--l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA--LPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh--CCCCCccEEEECCCCC
Confidence 489999999999999998875 35999999999999999999852 2 3689999998654 3456899999986431
Q ss_pred e------------------eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 125 S------------------LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 125 ~------------------~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
. +..+..+......+++++.+.|+|||.+++.....
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~ 266 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS 266 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence 1 11222344667889999999999999999876433
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.6e-13 Score=109.14 Aligned_cols=113 Identities=24% Similarity=0.380 Sum_probs=86.8
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHH--HHcCC-CCCcEEEEccccccccccCCC
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMM--KKYSN-RPQLKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~--~~~~~-~~~~~~~~~d~~~~~~~~~~~ 113 (237)
..+.....+-.+++|||||||+|.++..++..|...|+|+|.++...-+.+ +++.+ ...+.++...+.+++ . .+.
T Consensus 105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp-~-~~~ 182 (315)
T PF08003_consen 105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLP-N-LGA 182 (315)
T ss_pred HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhcc-c-cCC
Confidence 444443333344599999999999999999999879999999987766533 33332 223334435566776 3 678
Q ss_pred ccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 114 fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
||+|+|-++|.|. .++...|.++.+.|+|||.+++.|.
T Consensus 183 FDtVF~MGVLYHr-------r~Pl~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 183 FDTVFSMGVLYHR-------RSPLDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred cCEEEEeeehhcc-------CCHHHHHHHHHHhhCCCCEEEEEEe
Confidence 9999999999999 8999999999999999999999775
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.7e-13 Score=111.10 Aligned_cols=110 Identities=16% Similarity=0.209 Sum_probs=85.9
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..++... ..+++++|+|+.+++.|+++.. +. .++.++++|+.+. ++..+||+|+++.+..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~--~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP--LAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc--CcCCCccEEEECCCCC
Confidence 389999999999999999875 3599999999999999999874 22 2489999998764 3445899999985431
Q ss_pred e------------------eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 125 S------------------LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 125 ~------------------~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
. +..+.++......+++++.++|+|||.+++.....
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 1 11223445578899999999999999998877544
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-13 Score=112.38 Aligned_cols=109 Identities=22% Similarity=0.324 Sum_probs=82.9
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCC-C--cEEEEccccccccccCCC
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRP-Q--LKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~-~--~~~~~~d~~~~~~~~~~~ 113 (237)
.+++.....++. +|||+|||+|.+++.+++.|..+++|+|++|.+++.|++|..-+. . +.....+....+ ..++
T Consensus 153 L~~Le~~~~~g~-~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~--~~~~ 229 (300)
T COG2264 153 LEALEKLLKKGK-TVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP--ENGP 229 (300)
T ss_pred HHHHHHhhcCCC-EEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc--ccCc
Confidence 445666666565 999999999999999999998799999999999999999984211 1 222222333332 3469
Q ss_pred ccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 114 fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
||+|+++- |. +-...+...+.++|+|||+++++-.
T Consensus 230 ~DvIVANI-LA---------~vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 230 FDVIVANI-LA---------EVLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred ccEEEehh-hH---------HHHHHHHHHHHHHcCCCceEEEEee
Confidence 99999985 32 3457899999999999999998764
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-12 Score=105.55 Aligned_cols=151 Identities=15% Similarity=0.226 Sum_probs=103.4
Q ss_pred CCCCCCCChhhhHHHhccC-------CCCceeecCCcChHHHHHhhCCCC-CCcEEEEccCCchhHHHHHHcC-CCeEEE
Q 026558 5 TTTQAYGEPWYWDNRYAHE-------SGPFDWYQKYPSLAPLIKLYVPSH-HQRILIVGCGNSAFSEGMVDDG-YEDVVN 75 (237)
Q Consensus 5 ~~~~~~~~~~~w~~~y~~~-------~~~~~~~~~~~~~~~~l~~~~~~~-~~~iLdlG~G~G~~~~~~~~~~-~~~~~~ 75 (237)
.++..+.....|....... ++.|.+. .-+.=.+++...++.. ..+|||+|||.|.+++.+++.. ..+++.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~t~pGVFS~~-~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtm 187 (300)
T COG2813 109 ENPPPFADEPEWKVYLLGHELTFKTLPGVFSRD-KLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTL 187 (300)
T ss_pred CCCCcccchhhhhhhhccCceEEEeCCCCCcCC-CcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEE
Confidence 3445555566676655411 3334432 2222244444444433 3499999999999999999987 469999
Q ss_pred EeCCHHHHHHHHHHcCC-C-CCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEE
Q 026558 76 VDISSVVIEAMMKKYSN-R-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVY 153 (237)
Q Consensus 76 vD~s~~~~~~a~~~~~~-~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l 153 (237)
+|+|..+++.|++++.. . .+..+...|..+.. .++||.|+|+.++|.= -.....-..+++..+.++|++||.+
T Consensus 188 vDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v---~~kfd~IisNPPfh~G--~~v~~~~~~~~i~~A~~~L~~gGeL 262 (300)
T COG2813 188 VDVNARAVESARKNLAANGVENTEVWASNLYEPV---EGKFDLIISNPPFHAG--KAVVHSLAQEIIAAAARHLKPGGEL 262 (300)
T ss_pred EecCHHHHHHHHHhHHHcCCCccEEEEecccccc---cccccEEEeCCCccCC--cchhHHHHHHHHHHHHHhhccCCEE
Confidence 99999999999999852 2 34366777776553 2399999999999732 1111223448999999999999999
Q ss_pred EEEEcCCc
Q 026558 154 ILVTYGAP 161 (237)
Q Consensus 154 ~~~~~~~~ 161 (237)
.++....+
T Consensus 263 ~iVan~~l 270 (300)
T COG2813 263 WIVANRHL 270 (300)
T ss_pred EEEEcCCC
Confidence 99876443
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.6e-13 Score=107.02 Aligned_cols=119 Identities=18% Similarity=0.294 Sum_probs=92.3
Q ss_pred HHHhhCCCC-CCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEcccccccc-ccCC
Q 026558 39 LIKLYVPSH-HQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDE-FQTG 112 (237)
Q Consensus 39 ~l~~~~~~~-~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~-~~~~ 112 (237)
++..+.... .++|||||||+|.++..++++. ..++++||+++++.+.|+++.+. ..++++++.|+.++.. ....
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~ 114 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFA 114 (248)
T ss_pred HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccccc
Confidence 344444333 3599999999999999999984 46999999999999999999864 3489999999988753 3345
Q ss_pred CccEEEeccccceeccC-C----------CChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 113 SFDSVVDKGTLDSLLCG-S----------NSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~-~----------~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+||+|+|+.++...... . ...-...++++.+.++|||||.+.++.
T Consensus 115 ~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 115 SFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred ccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 79999999886544222 0 111256789999999999999999876
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.8e-13 Score=109.42 Aligned_cols=170 Identities=22% Similarity=0.296 Sum_probs=115.6
Q ss_pred HHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CC-----CcEEEEccccccc---
Q 026558 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RP-----QLKYIKMDVRQMD--- 107 (237)
Q Consensus 39 ~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~-----~~~~~~~d~~~~~--- 107 (237)
+|+....+.. .+++||||.|..++.+-+.+...++|+||++..+++|+++... .. .+.|+.+|.....
T Consensus 110 LI~~y~~~~~-~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d 188 (389)
T KOG1975|consen 110 LINLYTKRGD-DVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMD 188 (389)
T ss_pred HHHHHhcccc-ccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHH
Confidence 3444555565 8999999999999999888877999999999999999999842 11 3678899986421
Q ss_pred --cccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchhhhhcc--cCCCCceEEEEEecc
Q 026558 108 --EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGML--RDSCSWNIKLHVIEK 183 (237)
Q Consensus 108 --~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~--~~~~~w~~~~~~~~~ 183 (237)
++.+.+||+|-|-.++|+.+ .+.+....+|.++.+.|+|||+++......... ...+ .+...|.-.+..+..
T Consensus 189 ~~e~~dp~fDivScQF~~HYaF---etee~ar~~l~Nva~~LkpGG~FIgTiPdsd~I-i~rlr~~e~~~~gNdiykv~y 264 (389)
T KOG1975|consen 189 LLEFKDPRFDIVSCQFAFHYAF---ETEESARIALRNVAKCLKPGGVFIGTIPDSDVI-IKRLRAGEVERFGNDIYKVTY 264 (389)
T ss_pred hccCCCCCcceeeeeeeEeeee---ccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHH-HHHHHhccchhhcceeeeEee
Confidence 24455699999999998764 456788889999999999999998776443221 1112 223355545433332
Q ss_pred ceecccCC-CCCcccccCcccCCCCCchhhhc
Q 026558 184 LVVEEKSG-HPIWELTNPVPLENDGRSVEELL 214 (237)
Q Consensus 184 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 214 (237)
..-..... -|.+.....+.|++... .++++
T Consensus 265 ~~~~~k~~~~p~fG~kY~F~LedaVd-cPEyl 295 (389)
T KOG1975|consen 265 EIEFQKEFDVPPFGAKYRFHLEDAVD-CPEYL 295 (389)
T ss_pred eeecccccCCCCccceEEEEcccccC-Cccee
Confidence 21111111 35556666677766666 44443
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.6e-13 Score=107.51 Aligned_cols=103 Identities=24% Similarity=0.400 Sum_probs=86.3
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++.. ...+.+...|+.+.+....+.||+|++..+++++
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~- 127 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV- 127 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc-
Confidence 4899999999999999988764 899999999999999988642 2356788888876643345789999999999888
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
.+...+++.+.+.|+|||.+++....
T Consensus 128 ------~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 128 ------PDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred ------CCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 67788999999999999999887654
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.2e-13 Score=105.97 Aligned_cols=94 Identities=24% Similarity=0.424 Sum_probs=76.7
Q ss_pred hCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc-cccccCCCccEEEecc
Q 026558 43 YVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-MDEFQTGSFDSVVDKG 121 (237)
Q Consensus 43 ~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~~~~~~~fD~I~~~~ 121 (237)
.++++. +|||+|||+|.++..+++.....++|+|+|+.+++.++++ +++++++|+.+ ++.+++++||+|+++.
T Consensus 10 ~i~~~~-~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-----~~~~~~~d~~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 10 LIPPGS-RVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-----GVNVIQGDLDEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred hcCCCC-EEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-----CCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence 344454 9999999999999988876545889999999999998754 47888888875 3225678899999999
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCC
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKD 149 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~p 149 (237)
+++|+ .+...+++++.+.+++
T Consensus 84 ~l~~~-------~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 84 TLQAT-------RNPEEILDEMLRVGRH 104 (194)
T ss_pred HhHcC-------cCHHHHHHHHHHhCCe
Confidence 99999 7788899999887653
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-12 Score=97.43 Aligned_cols=104 Identities=17% Similarity=0.256 Sum_probs=84.6
Q ss_pred CCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEecc
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~ 121 (237)
+.+..+++|+|||||+.++.++..+ ..+++++|-++++++..++|.. +.+|+.++.+++.+.. ....++|.||..+
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L-~~~~~~daiFIGG 110 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEAL-PDLPSPDAIFIGG 110 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhh-cCCCCCCEEEECC
Confidence 3333599999999999999999655 3599999999999999998885 3579999999998764 1222799999987
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
. .....+++.+...|+|||++++....-
T Consensus 111 g-----------~~i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 111 G-----------GNIEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred C-----------CCHHHHHHHHHHHcCcCCeEEEEeecH
Confidence 6 344889999999999999999866433
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=104.39 Aligned_cols=134 Identities=11% Similarity=0.107 Sum_probs=91.3
Q ss_pred CCChhhhHHHhccCCCCceee--cCCcChHHHHHhhCC-CCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHH
Q 026558 10 YGEPWYWDNRYAHESGPFDWY--QKYPSLAPLIKLYVP-SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAM 86 (237)
Q Consensus 10 ~~~~~~w~~~y~~~~~~~~~~--~~~~~~~~~l~~~~~-~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a 86 (237)
|-...+++..|......+..- ...+.+...+...+. .+..+|||+|||+|..+..+++... +++++|+++.+++.+
T Consensus 38 f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~a 116 (212)
T PRK00312 38 FVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWEA 116 (212)
T ss_pred cCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHHH
Confidence 334445565566553332210 112223333333333 3334999999999999988887754 899999999999999
Q ss_pred HHHcC--CCCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 87 MKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 87 ~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+++++ +..++.+..+|..+.. ...+.||+|++...++++ .+.+.+.|+|||++++...
T Consensus 117 ~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~I~~~~~~~~~-------------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 117 KRRLKQLGLHNVSVRHGDGWKGW-PAYAPFDRILVTAAAPEI-------------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred HHHHHHCCCCceEEEECCcccCC-CcCCCcCEEEEccCchhh-------------hHHHHHhcCCCcEEEEEEc
Confidence 99874 3346899999986542 234789999998765443 3457899999999988764
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.1e-13 Score=111.23 Aligned_cols=108 Identities=16% Similarity=0.193 Sum_probs=82.7
Q ss_pred CCCCCCcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCC-CC--CcEEEEccccccccccCC----Cc
Q 026558 44 VPSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSN-RP--QLKYIKMDVRQMDEFQTG----SF 114 (237)
Q Consensus 44 ~~~~~~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~-~~--~~~~~~~d~~~~~~~~~~----~f 114 (237)
++++. +|||+|||+|..+..+++.. ..+++++|+|++|++.+++++.. .+ ++.++++|+.+...++.. ..
T Consensus 61 ~~~~~-~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~ 139 (301)
T TIGR03438 61 TGAGC-ELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRR 139 (301)
T ss_pred hCCCC-eEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCe
Confidence 34444 89999999999999998875 24899999999999999988743 23 456689999764213222 23
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.++++..+++++ ++++...+|+++.++|+|||.+++..
T Consensus 140 ~~~~~gs~~~~~-----~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 140 LGFFPGSTIGNF-----TPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEEEecccccCC-----CHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 455555677777 67888999999999999999998754
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.7e-13 Score=112.54 Aligned_cols=124 Identities=18% Similarity=0.210 Sum_probs=91.9
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccc-cccCC
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMD-EFQTG 112 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~-~~~~~ 112 (237)
..++..........+||||||+|.++..+++.. ...++|+|+++.+++.|.+++. +..|+.++++|+..+. .++++
T Consensus 112 ~~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 112 DNFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 344555544433499999999999999999875 3499999999999999998874 3468999999997642 26788
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
++|.|+++.+.-+. ...+-+-....+++++.|+|+|||.+.+.|....
T Consensus 192 s~D~I~lnFPdPW~-KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~ 239 (390)
T PRK14121 192 SVEKIFVHFPVPWD-KKPHRRVISEDFLNEALRVLKPGGTLELRTDSEL 239 (390)
T ss_pred ceeEEEEeCCCCcc-ccchhhccHHHHHHHHHHHcCCCcEEEEEEECHH
Confidence 99999987543221 0000001236799999999999999999885443
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=110.85 Aligned_cols=110 Identities=16% Similarity=0.175 Sum_probs=87.5
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+|||+|||+|.+++.++..+. .++|+|+++.+++.++++++ +..++.+.++|+.+++ +..++||+|+++.++...
T Consensus 184 ~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~-~~~~~~D~Iv~dPPyg~~ 261 (329)
T TIGR01177 184 DRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP-LSSESVDAIATDPPYGRS 261 (329)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC-cccCCCCEEEECCCCcCc
Confidence 3899999999999998877764 99999999999999999875 2345789999999887 667899999999776432
Q ss_pred ccC--CCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 127 LCG--SNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 127 ~~~--~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
... .........+++++.++|+|||++++...+.
T Consensus 262 ~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 262 TTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred ccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 100 0112346889999999999999998887544
|
This family is found exclusively in the Archaea. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.7e-13 Score=110.62 Aligned_cols=95 Identities=20% Similarity=0.325 Sum_probs=74.6
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-------CCCcEEEEccccccccccCCCccEEEecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-------RPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~~~~~~~~~~fD~I~~~~ 121 (237)
.+|||+|||+|.++..+++.+. +++|+|+|+.|++.++++... ..++.|...|+.++ .++||+|++..
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~Vv~~~ 220 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDTVTCLD 220 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCEEEEcC
Confidence 4999999999999999999875 999999999999999998742 13567888887544 47899999999
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 154 (237)
+++|+ +.+....+++.+.+ +.++|.++
T Consensus 221 vL~H~-----p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 221 VLIHY-----PQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred EEEec-----CHHHHHHHHHHHHh-hcCCEEEE
Confidence 98887 44445567777765 45555543
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.7e-13 Score=109.56 Aligned_cols=111 Identities=19% Similarity=0.305 Sum_probs=85.6
Q ss_pred CCCCCCcEEEEccCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcC-------CCCCcEEEEccccccccccCCCcc
Q 026558 44 VPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYS-------NRPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 44 ~~~~~~~iLdlG~G~G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~-------~~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
..+.+++||+||||+|..+..++++ +..+++++|+++.+++.|++.+. ..++++++.+|+........++||
T Consensus 73 ~~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 73 AHPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred hCCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 3344459999999999999999887 45599999999999999999873 246889999999876423467899
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+|+++.+-... .........+++.+.+.|+|||++++..
T Consensus 153 vIi~D~~dp~~---~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 153 VIIVDSTDPVG---PAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EEEECCCCCCC---chhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 99997542211 1111234788999999999999998864
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=7e-13 Score=106.24 Aligned_cols=103 Identities=25% Similarity=0.377 Sum_probs=87.0
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC-C-CcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-P-QLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~-~-~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+|||+|||+|.++..+++.+. .++++|+++.+++.+++++... . ++.+...|+.+.+....++||+|++...+++.
T Consensus 47 ~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~ 125 (224)
T TIGR01983 47 LRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHV 125 (224)
T ss_pred CeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhC
Confidence 4899999999999999988765 7999999999999999987432 2 58888888877652224789999999999988
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
.+...+++++.++|+|||.+++.+..
T Consensus 126 -------~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 126 -------PDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred -------CCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 77889999999999999999887643
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.3e-13 Score=117.43 Aligned_cols=108 Identities=20% Similarity=0.224 Sum_probs=84.2
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.+++.++... ..+++++|+|+.+++.|+++... ..++.++++|+.+. ++.++||+|+++.+..
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~--~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN--IEKQKFDFIVSNPPYI 217 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh--CcCCCccEEEECCCCC
Confidence 389999999999999888753 45999999999999999999742 23688999998653 3456899999986532
Q ss_pred e-------------------eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 125 S-------------------LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 125 ~-------------------~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
. ++.+..+.+....+++.+.++|+|||.+++...
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 1 123334556778899999999999999988653
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.1e-12 Score=99.16 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=81.2
Q ss_pred HHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEE
Q 026558 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSV 117 (237)
Q Consensus 38 ~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I 117 (237)
.+++........+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++....+++++.+|+.+++ ++...||.|
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~-~~~~~~d~v 81 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD-LPKLQPYKV 81 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC-ccccCCCEE
Confidence 33443333333489999999999999999985 4999999999999999999866568999999999887 556679999
Q ss_pred EeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+++.+++.. ......+++.. .+.++|.++++.
T Consensus 82 i~n~Py~~~------~~~i~~~l~~~--~~~~~~~l~~q~ 113 (169)
T smart00650 82 VGNLPYNIS------TPILFKLLEEP--PAFRDAVLMVQK 113 (169)
T ss_pred EECCCcccH------HHHHHHHHhcC--CCcceEEEEEEH
Confidence 998776532 23333333321 244778887754
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-12 Score=109.29 Aligned_cols=101 Identities=18% Similarity=0.262 Sum_probs=84.4
Q ss_pred CcEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.+++.++++.. .+++++|. +.+++.+++++.. ..+++++.+|+.+.+ ++ .+|+|++..++|
T Consensus 151 ~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~-~~--~~D~v~~~~~lh 226 (306)
T TIGR02716 151 KKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES-YP--EADAVLFCRILY 226 (306)
T ss_pred CEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC-CC--CCCEEEeEhhhh
Confidence 4999999999999999998863 48999997 8899999988742 246899999998654 43 369999988888
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+. +.+....++++++++|+|||++++.+.
T Consensus 227 ~~-----~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 227 SA-----NEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred cC-----ChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 76 555668899999999999999999874
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-12 Score=102.59 Aligned_cols=102 Identities=14% Similarity=0.184 Sum_probs=76.8
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc-------cccCCCccEEEe
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD-------EFQTGSFDSVVD 119 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-------~~~~~~fD~I~~ 119 (237)
.+|||||||+|.++..+++.. ...++|+|+++ + ...+++.++++|+.+.. .+..++||+|++
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S 123 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMS 123 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEec
Confidence 499999999999999998874 24899999998 1 12257899999998753 145788999999
Q ss_pred ccccceeccCCCChH------HHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 120 KGTLDSLLCGSNSRQ------NATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~------~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
+...++. +.+..+ ....+++++.++|+|||.+++..+...
T Consensus 124 ~~~~~~~--g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~ 169 (209)
T PRK11188 124 DMAPNMS--GTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE 169 (209)
T ss_pred CCCCccC--CChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc
Confidence 8766543 111111 125689999999999999999776553
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=106.89 Aligned_cols=98 Identities=20% Similarity=0.200 Sum_probs=72.7
Q ss_pred CCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.++. +|||+|||+|.+++.+++.+..+++|+|+|+.+++.|+++.... ++. +...+. ..+.+||+|+++...
T Consensus 118 ~~~~-~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~-~~~----~~~~~~-~~~~~fD~Vvani~~- 189 (250)
T PRK00517 118 LPGK-TVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELN-GVE----LNVYLP-QGDLKADVIVANILA- 189 (250)
T ss_pred CCCC-EEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHc-CCC----ceEEEc-cCCCCcCEEEEcCcH-
Confidence 3444 99999999999999888887657999999999999999997431 111 111111 112279999987432
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
.....+++++.++|+|||++++....
T Consensus 190 ---------~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 190 ---------NPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred ---------HHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 34577899999999999999998643
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.6e-13 Score=111.25 Aligned_cols=108 Identities=24% Similarity=0.320 Sum_probs=80.3
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC-CCcEEEEccccccccccCCCcc
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD 115 (237)
.+++.....++. +|||+|||+|.+++..++.|..+++|+|++|.+++.|++|..-+ -..++......+ ...++||
T Consensus 152 l~~l~~~~~~g~-~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~---~~~~~~d 227 (295)
T PF06325_consen 152 LELLEKYVKPGK-RVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSED---LVEGKFD 227 (295)
T ss_dssp HHHHHHHSSTTS-EEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSC---TCCS-EE
T ss_pred HHHHHHhccCCC-EEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecc---cccccCC
Confidence 445666656665 99999999999999999999779999999999999999998421 112333322222 2358999
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+|+++-.. .-...++..+.++|+|||.++++-.
T Consensus 228 lvvANI~~----------~vL~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 228 LVVANILA----------DVLLELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp EEEEES-H----------HHHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred EEEECCCH----------HHHHHHHHHHHHhhCCCCEEEEccc
Confidence 99998544 3457888999999999999998764
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=8e-12 Score=92.68 Aligned_cols=117 Identities=21% Similarity=0.323 Sum_probs=98.1
Q ss_pred hHHHHHhhCCCCC-CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc----c
Q 026558 36 LAPLIKLYVPSHH-QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----E 108 (237)
Q Consensus 36 ~~~~l~~~~~~~~-~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~----~ 108 (237)
+.+.....+.... .-|||+|.|||.++.++++++ ...++++|+|++......+.+ +.+.++.+|+.++. +
T Consensus 36 lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~---p~~~ii~gda~~l~~~l~e 112 (194)
T COG3963 36 LARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY---PGVNIINGDAFDLRTTLGE 112 (194)
T ss_pred HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC---CCccccccchhhHHHHHhh
Confidence 4444555554444 389999999999999999998 459999999999999999998 56778999987654 3
Q ss_pred ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 109 ~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+....||.|+|.-++-.+ +.....++++.+...|..||.++..++++
T Consensus 113 ~~gq~~D~viS~lPll~~-----P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 113 HKGQFFDSVISGLPLLNF-----PMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred cCCCeeeeEEeccccccC-----cHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 667889999999888777 77888999999999999999999999874
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.5e-12 Score=89.24 Aligned_cols=100 Identities=28% Similarity=0.449 Sum_probs=83.5
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccce-e
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS-L 126 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~-~ 126 (237)
+|+|+|||+|..+..+++....+++++|+++.+++.+++... ...++.+...|+.+......++||+|+++.++++ .
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 589999999999999988444599999999999999984332 2357889999998775224678999999999887 4
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
.....+++.+.+.|+|||.+++.
T Consensus 81 -------~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 -------EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -------hHHHHHHHHHHHHcCCCCEEEEE
Confidence 78899999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=107.60 Aligned_cols=140 Identities=22% Similarity=0.298 Sum_probs=98.0
Q ss_pred hhhhHHHhccCCCCceeecCCcChHHHHHh---hCCCCCCcEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHH
Q 026558 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKL---YVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMK 88 (237)
Q Consensus 13 ~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~ 88 (237)
+.||.-.+...++.+. +.++-..++.. .......+|||+|||+|.+++.++..+. .+|+|+|+|+.+++.|++
T Consensus 76 ~~f~gl~~~v~~~vli---Pr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~ 152 (280)
T COG2890 76 AEFGGLRFKVDEGVLI---PRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARE 152 (280)
T ss_pred CeecceeeeeCCCcee---cCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHH
Confidence 3455555555555544 44443333333 2222221699999999999999999874 499999999999999999
Q ss_pred HcCC--CCCcEEEEccccccccccCCCccEEEeccccc------------------eeccCCCChHHHHHHHHHHHHhcC
Q 026558 89 KYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD------------------SLLCGSNSRQNATQMLKEVWRVLK 148 (237)
Q Consensus 89 ~~~~--~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~------------------~~~~~~~~~~~~~~~l~~~~~~L~ 148 (237)
|... ..++.++++|..+.. .++||+|++|.+.- .+..+.++.+....++.++.+.|+
T Consensus 153 Na~~~~l~~~~~~~~dlf~~~---~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~ 229 (280)
T COG2890 153 NAERNGLVRVLVVQSDLFEPL---RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILK 229 (280)
T ss_pred HHHHcCCccEEEEeeeccccc---CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcC
Confidence 9853 244556666665543 34999999997631 122333566788899999999999
Q ss_pred CCcEEEEEEc
Q 026558 149 DKGVYILVTY 158 (237)
Q Consensus 149 pgG~l~~~~~ 158 (237)
|||.+++...
T Consensus 230 ~~g~l~le~g 239 (280)
T COG2890 230 PGGVLILEIG 239 (280)
T ss_pred CCcEEEEEEC
Confidence 9999988775
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.8e-12 Score=99.09 Aligned_cols=107 Identities=25% Similarity=0.341 Sum_probs=82.3
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--CCC--cEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQ--LKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~~~--~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++.+ .+++++|+|+.+++.+++++.. ..+ +.++..|+.+. +.+.+||+|+++.++.
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~d~vi~n~p~~ 101 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP--FRGDKFDVILFNPPYL 101 (188)
T ss_pred CEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc--ccccCceEEEECCCcC
Confidence 489999999999999999885 5999999999999999888732 122 78888888764 3455899999987653
Q ss_pred ee--------------ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 125 SL--------------LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 125 ~~--------------~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.. ..+..+......+++++.++|+|||.+++...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 31 01112234567889999999999999887653
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.2e-13 Score=110.81 Aligned_cols=110 Identities=25% Similarity=0.298 Sum_probs=83.9
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC----C----C----CCcEEEEccccccc---cccC--
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS----N----R----PQLKYIKMDVRQMD---EFQT-- 111 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~----~----~----~~~~~~~~d~~~~~---~~~~-- 111 (237)
.+|||||||.|..+..+...+...++|+||+++.++.|+++.+ . . -...++.+|..... .+..
T Consensus 64 ~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~ 143 (331)
T PF03291_consen 64 LTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRS 143 (331)
T ss_dssp -EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTT
T ss_pred CeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccccC
Confidence 3999999999999888888877799999999999999999981 1 1 13567888876422 1333
Q ss_pred CCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
..||+|-|-..+|+.+ .+.+....+|+++.+.|+|||+++..+....
T Consensus 144 ~~FDvVScQFalHY~F---ese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 144 RKFDVVSCQFALHYAF---ESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp S-EEEEEEES-GGGGG---SSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred CCcceeehHHHHHHhc---CCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 5999999999999886 4567888899999999999999999886553
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-12 Score=118.52 Aligned_cols=122 Identities=15% Similarity=0.115 Sum_probs=90.5
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CC--CCcEEEEccccccccccCC
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NR--PQLKYIKMDVRQMDEFQTG 112 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~--~~~~~~~~d~~~~~~~~~~ 112 (237)
+.++..... +. +|||+|||+|.+++.++..|..+|+++|+|+.+++.|++++. +. .+++++++|+.+......+
T Consensus 530 R~~~~~~~~-g~-rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~ 607 (702)
T PRK11783 530 RRMIGQMAK-GK-DFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEARE 607 (702)
T ss_pred HHHHHHhcC-CC-eEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCC
Confidence 445555443 44 899999999999999999876589999999999999999984 22 3689999999775311256
Q ss_pred CccEEEeccccceecc----CCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 113 SFDSVVDKGTLDSLLC----GSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~----~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+||+|+++.+...-.- -.....+...++..+.++|+|||.+++.+...
T Consensus 608 ~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~ 659 (702)
T PRK11783 608 QFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR 659 (702)
T ss_pred CcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 8999999865321100 00113466788999999999999998876543
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.2e-12 Score=102.80 Aligned_cols=94 Identities=26% Similarity=0.364 Sum_probs=76.4
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++.+. .++|+|+|+.+++.|++++... .++.+..+|+. ...++||+|++..+++|
T Consensus 65 ~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~----~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 65 LRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE----SLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch----hccCCcCEEEEcchhhc
Confidence 4899999999999999998875 7999999999999999987431 36888888843 23578999999999987
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGV 152 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~ 152 (237)
+ +......+++.+.+.++++++
T Consensus 140 ~-----~~~~~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 140 Y-----PQEDAARMLAHLASLTRGSLI 161 (230)
T ss_pred C-----CHHHHHHHHHHHHhhcCCeEE
Confidence 6 456778888999887754443
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.9e-12 Score=99.98 Aligned_cols=114 Identities=13% Similarity=0.151 Sum_probs=82.5
Q ss_pred hHHHHHhhCC-CCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccC
Q 026558 36 LAPLIKLYVP-SHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQT 111 (237)
Q Consensus 36 ~~~~l~~~~~-~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~ 111 (237)
+..++...+. ....+|||+|||+|.++..+++.. ..+++++|+|+.+++.++++++ +..+++++.+|+.+......
T Consensus 28 v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~ 107 (196)
T PRK07402 28 VRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLA 107 (196)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCC
Confidence 4444444443 233499999999999999988653 3599999999999999999874 33578999999865321222
Q ss_pred CCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
..+|.++... . .....+++++.++|+|||.+++.....
T Consensus 108 ~~~d~v~~~~----~-------~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 108 PAPDRVCIEG----G-------RPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred CCCCEEEEEC----C-------cCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 3467765532 1 345788999999999999999887543
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-11 Score=99.49 Aligned_cols=99 Identities=17% Similarity=0.173 Sum_probs=76.0
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc--cccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD--EFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~--~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++.- ...|+++|+++.+++.+.+.....+|+.++..|+.... ....+.+|+|+++..
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva-- 211 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVA-- 211 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeCC--
Confidence 399999999999999999874 24899999999876555555443468999999986531 123457999999763
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
. +.+...++.++.++|||||.+++.
T Consensus 212 ~-------pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 212 Q-------PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred C-------cchHHHHHHHHHHhccCCCEEEEE
Confidence 1 245666778899999999999984
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=100.30 Aligned_cols=108 Identities=18% Similarity=0.231 Sum_probs=82.8
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||+|||+|.++..++.+. ..+++++|+++.+++.++++. +++.++++|+.++. ...+||+|+++.++.+..
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---~~v~~v~~D~~e~~--~~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---PEAEWITSDVFEFE--SNEKFDVVISNPPFGKIN 140 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---cCCEEEECchhhhc--ccCCCcEEEEcCCccccC
Confidence 499999999999998887764 359999999999999999986 57899999998875 356899999999987751
Q ss_pred cCC-C----------ChHH--HHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 128 CGS-N----------SRQN--ATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 128 ~~~-~----------~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
... . +.+. ..+++.....+|+|+|.+++...+.|
T Consensus 141 ~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~ 187 (279)
T PHA03411 141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP 187 (279)
T ss_pred chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc
Confidence 100 0 0011 35677888899999998777644333
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-11 Score=98.56 Aligned_cols=99 Identities=12% Similarity=0.219 Sum_probs=77.1
Q ss_pred CcEEEEccCCchhHHHHHHc----CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDD----GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~----~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++. ...+++++|+++.+++.|+++. +++.+...|+.... + .++||+|+++.++.
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~---~~~~~~~~D~~~~~-~-~~~FDlIIsNPPY~ 125 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV---PEATWINADALTTE-F-DTLFDMAISNPPFG 125 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc---cCCEEEEcchhccc-c-cCCccEEEECCCCC
Confidence 49999999999999988874 2348999999999999999886 46889999998765 3 56899999998876
Q ss_pred eeccCC-----CChHHHHHHHHHHHHhcCCCcE
Q 026558 125 SLLCGS-----NSRQNATQMLKEVWRVLKDKGV 152 (237)
Q Consensus 125 ~~~~~~-----~~~~~~~~~l~~~~~~L~pgG~ 152 (237)
..-... .+......+++.+.+++++|+.
T Consensus 126 ~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 126 KIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 442111 1234567789999996666654
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-11 Score=94.98 Aligned_cols=109 Identities=13% Similarity=0.125 Sum_probs=88.8
Q ss_pred ChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCC
Q 026558 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTG 112 (237)
Q Consensus 35 ~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~ 112 (237)
.+..+++.+...+..+|||||||+|+.+..+++... +|+.+|+.++..+.|++++. +..|+.+.++|....- -+..
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~-~~~a 137 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGW-PEEA 137 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCC-CCCC
Confidence 356666666665556999999999999999998865 99999999999999999996 4558999999998763 3458
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.||.|+.......+ =+.+.+.|++||++++...
T Consensus 138 PyD~I~Vtaaa~~v-------------P~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 138 PYDRIIVTAAAPEV-------------PEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CcCEEEEeeccCCC-------------CHHHHHhcccCCEEEEEEc
Confidence 89999998766544 2336778999999999775
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-11 Score=107.47 Aligned_cols=112 Identities=17% Similarity=0.298 Sum_probs=86.3
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|..+..+++.. ..+++++|+++.+++.++++++ +..++++.+.|+..++.+..++||.|+++.++.
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCs 318 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPCT 318 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCCC
Confidence 499999999999999998863 3499999999999999999985 334688999999876534467899999976653
Q ss_pred eeccCCC--------Ch-------HHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 125 SLLCGSN--------SR-------QNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 125 ~~~~~~~--------~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
....-.. +. ..+.++|.++.+.|+|||+++..|.+-
T Consensus 319 g~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 319 SLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 2210000 00 245778999999999999999988654
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-11 Score=100.91 Aligned_cols=110 Identities=16% Similarity=0.242 Sum_probs=83.5
Q ss_pred CCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEecccc
Q 026558 48 HQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 48 ~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l 123 (237)
+.+|||||||+|.++..+++.. ..+++++|+++++++.|++.+.. .++++++.+|+.+......++||+|+++..
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~- 145 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGF- 145 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCC-
Confidence 3489999999999999998765 35899999999999999999852 367899999997653223468999998742
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+.. ..........+++++.++|+|||++++.....
T Consensus 146 ~~~--~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 146 DGE--GIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred CCC--CCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 111 00111234789999999999999999865433
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.8e-12 Score=99.88 Aligned_cols=100 Identities=18% Similarity=0.273 Sum_probs=76.0
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCc--EEEEccccccccccCCCccEEEecccccee
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQL--KYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~--~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.++|+|||+|..++-++++. .+|+|+|+|+.|++.|++.... ..+. .+...+..++. -.+++.|+|++..++|++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~-k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~-g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHY-KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL-GGEESVDLITAAQAVHWF 113 (261)
T ss_pred eEEEeccCCCcchHHHHHhh-hhheeecCCHHHHHHhhcCCCcccccCCcccccccccccc-CCCcceeeehhhhhHHhh
Confidence 89999999998888888885 5999999999999999988632 1111 22222222232 137899999999999987
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCc-EEEEEEcC
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKG-VYILVTYG 159 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG-~l~~~~~~ 159 (237)
+..++.+++.|+||++| .+.+..+.
T Consensus 114 --------dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 114 --------DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred --------chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 67889999999999776 77666654
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-11 Score=106.52 Aligned_cols=110 Identities=16% Similarity=0.239 Sum_probs=83.5
Q ss_pred CcEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcCCC-CCcEEEEcccccccc-ccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDE-FQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~-~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|..+..+++... .+++++|+++.+++.++++++.. .++.++++|+.+++. +..++||.|+++.++..
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~ 325 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCSA 325 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCCc
Confidence 4999999999999999998753 59999999999999999998532 246889999987642 23568999998765432
Q ss_pred ec--cC------CCCh-------HHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LL--CG------SNSR-------QNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~--~~------~~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.. .. .... ..+..+++.+.+.|+|||++++.+.
T Consensus 326 ~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 326 TGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred ccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 10 00 0111 2245789999999999999999885
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.1e-12 Score=97.24 Aligned_cols=103 Identities=17% Similarity=0.241 Sum_probs=73.2
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc-------cccCCCccEEEe
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD-------EFQTGSFDSVVD 119 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-------~~~~~~fD~I~~ 119 (237)
.+|||+|||+|.++..+++.. ..+++++|+|+.+ . .+++.++++|+.+.. .++.++||+|++
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~---~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~ 104 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P---IENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMS 104 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c---CCCceEEEeeCCChhHHHHHHHHhCCCCccEEEc
Confidence 499999999999999888764 2379999999864 1 256788888886632 134668999999
Q ss_pred ccccceecc-CC---CChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 120 KGTLDSLLC-GS---NSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 120 ~~~l~~~~~-~~---~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+.+.+.... .. ........++.++.++|+|||++++..+..
T Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 105 DAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred CCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence 754321100 00 011235789999999999999999876443
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.4e-12 Score=96.42 Aligned_cols=81 Identities=21% Similarity=0.315 Sum_probs=71.2
Q ss_pred EEEeCCHHHHHHHHHHcC--C---CCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcC
Q 026558 74 VNVDISSVVIEAMMKKYS--N---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLK 148 (237)
Q Consensus 74 ~~vD~s~~~~~~a~~~~~--~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~ 148 (237)
+|+|+|+.|++.|+++.. . ..+++++++|+.+++ +++++||+|++..+++++ .+...++++++|+||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~v~~~~~l~~~-------~d~~~~l~ei~rvLk 72 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP-FDDCEFDAVTMGYGLRNV-------VDRLRAMKEMYRVLK 72 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC-CCCCCeeEEEecchhhcC-------CCHHHHHHHHHHHcC
Confidence 489999999999987753 1 246899999999998 888899999999999988 788999999999999
Q ss_pred CCcEEEEEEcCCch
Q 026558 149 DKGVYILVTYGAPI 162 (237)
Q Consensus 149 pgG~l~~~~~~~~~ 162 (237)
|||.+++.++..+.
T Consensus 73 pGG~l~i~d~~~~~ 86 (160)
T PLN02232 73 PGSRVSILDFNKSN 86 (160)
T ss_pred cCeEEEEEECCCCC
Confidence 99999999877654
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-11 Score=101.39 Aligned_cols=111 Identities=16% Similarity=0.239 Sum_probs=83.2
Q ss_pred CCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC------CCCcEEEEccccccccccCCCccE
Q 026558 44 VPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDEFQTGSFDS 116 (237)
Q Consensus 44 ~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~~~~~~~fD~ 116 (237)
.++.+.+||+||||+|..+..+++.. ..+++++|+++.+++.+++.+.. .+++++...|..+......++||+
T Consensus 69 ~~~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 69 THPNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred cCCCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence 34444599999999999999988875 45899999999999999997632 256888888887643223578999
Q ss_pred EEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 117 I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
|+++...... ....-....+++.+.+.|+|||++++..
T Consensus 149 Ii~D~~~~~~---~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 149 IIVDSTDPVG---PAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EEEeCCCCCC---cccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 9997642211 0011125788999999999999999874
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.1e-11 Score=98.44 Aligned_cols=111 Identities=13% Similarity=0.136 Sum_probs=83.8
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|..+..+++.. ...++++|+++.+++.++++++ +..++.++..|+..++ ...+.||+|+++.+..
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~-~~~~~fD~Vl~D~Pcs 151 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFG-AAVPKFDAILLDAPCS 151 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhh-hhccCCCEEEEcCCCC
Confidence 499999999999999988753 2489999999999999999985 3347889999987765 3345799999976543
Q ss_pred eec--cCC------CCh-------HHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 125 SLL--CGS------NSR-------QNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 125 ~~~--~~~------~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
... ... .+. ..+.++|+++.+.|+|||+++..|.+-
T Consensus 152 g~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 152 GEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 210 000 011 134569999999999999999987543
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.1e-11 Score=100.52 Aligned_cols=95 Identities=18% Similarity=0.132 Sum_probs=74.9
Q ss_pred CcEEEEccCCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~--~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++... ..++++|+++.+++.|++++. +..++.++++|+.+.. ...+.||+|++...+.
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~-~~~~~fD~Ii~~~g~~ 160 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGV-PEFAPYDVIFVTVGVD 160 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcc-cccCCccEEEECCchH
Confidence 4999999999999999988642 369999999999999998874 3357889999987654 3346799999875443
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+ ...+.+.|+|||++++..
T Consensus 161 ~i-------------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 161 EV-------------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred Hh-------------HHHHHHhcCCCCEEEEEe
Confidence 22 334678999999988854
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.9e-11 Score=101.72 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=83.8
Q ss_pred CCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHc--C-------CCCCcEEEEccccccccccCCCcc
Q 026558 46 SHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKY--S-------NRPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 46 ~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~--~-------~~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
..+++||++|||+|..+..+++.. ..+++++|+++++++.|++.. . ..++++++.+|+.+......++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 344599999999999999998875 459999999999999999721 1 246899999999885423457899
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+|+++.+ +.. ..........++++.+.+.|+|||++++...
T Consensus 229 VIIvDl~-DP~-~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 229 VIIIDFP-DPA-TELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred EEEEcCC-Ccc-ccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 9999843 211 0001223457799999999999999988753
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-11 Score=115.18 Aligned_cols=157 Identities=14% Similarity=0.049 Sum_probs=107.3
Q ss_pred CCChhhhHHHhccCCCCceeecCCcChHHHHHhhCCC--CCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHH
Q 026558 10 YGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPS--HHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAM 86 (237)
Q Consensus 10 ~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a 86 (237)
.+.+.||...+...+..+.-+...+.+.+.+...... +..+|||+|||+|.+++.+++.. ..+++++|+|+.+++.|
T Consensus 79 ~G~~~F~~l~~~V~p~VLIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A 158 (1082)
T PLN02672 79 EGFRNRKKLTMMEIPSIFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVA 158 (1082)
T ss_pred CCeEEecCCceeeCCCcccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence 3556677777776666654221122233333221111 11389999999999999999875 35999999999999999
Q ss_pred HHHcCCC------------------CCcEEEEccccccccccCCCccEEEeccccc------------------------
Q 026558 87 MKKYSNR------------------PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD------------------------ 124 (237)
Q Consensus 87 ~~~~~~~------------------~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~------------------------ 124 (237)
++|.... .+++++++|+.+.......+||+|+++.+.-
T Consensus 159 ~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~ 238 (1082)
T PLN02672 159 WINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSL 238 (1082)
T ss_pred HHHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhcccccccccc
Confidence 9998421 2589999999765311123699999986621
Q ss_pred ----eecc---CCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchhhhh
Q 026558 125 ----SLLC---GSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLG 166 (237)
Q Consensus 125 ----~~~~---~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~ 166 (237)
.+.. +.++......++.++.++|+|||.+++.....+.....
T Consensus 239 ~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v~ 287 (1082)
T PLN02672 239 SNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQAVC 287 (1082)
T ss_pred CccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHH
Confidence 0111 24666778899999999999999999888666555444
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.6e-11 Score=94.31 Aligned_cols=103 Identities=9% Similarity=0.060 Sum_probs=77.0
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--CCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+|||+|||+|.+++.++.++..+++++|+++.+++.++++++. ..+++++++|+.+.......+||+|+++.++..
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~- 133 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFRK- 133 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCCC-
Confidence 49999999999999977666656999999999999999999742 347899999997643122456999999987431
Q ss_pred ccCCCChHHHHHHHHHHHH--hcCCCcEEEEEEcC
Q 026558 127 LCGSNSRQNATQMLKEVWR--VLKDKGVYILVTYG 159 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~--~L~pgG~l~~~~~~ 159 (237)
.....+++.+.. +|.|+|++++....
T Consensus 134 -------g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 134 -------GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred -------ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 223344454444 47899988887643
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.4e-11 Score=104.22 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=83.3
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|..+..+++.. ..+++++|+|+.+++.++++++ +..+++++++|+.+++ +.++||+|+++.+..
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~--~~~~fD~Vl~D~Pcs 329 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS--PEEQPDAILLDAPCT 329 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc--cCCCCCEEEEcCCCC
Confidence 499999999999998887742 2489999999999999999985 3346889999998774 456899999865432
Q ss_pred eec--cCC------CChH-------HHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 125 SLL--CGS------NSRQ-------NATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 125 ~~~--~~~------~~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
... ... .+++ .+..+|.++.+.|+|||++++.|.+-
T Consensus 330 g~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 330 GTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 110 000 0111 34568999999999999999998654
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.7e-11 Score=103.77 Aligned_cols=111 Identities=15% Similarity=0.200 Sum_probs=82.9
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|..+..+++.. ..+++++|+++.+++.++++++ +..++.++++|+.+......++||+|+++.+..
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcs 331 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAPCS 331 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCCCC
Confidence 489999999999999998863 3599999999999999999884 334689999999876421127899999986532
Q ss_pred eec--cC------CCChH-------HHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 125 SLL--CG------SNSRQ-------NATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 125 ~~~--~~------~~~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
... .. ..+.. ....+|+++.++|+|||.++..+..
T Consensus 332 g~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 332 GLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred CCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 210 00 00111 2356899999999999999987753
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.9e-11 Score=99.51 Aligned_cols=109 Identities=17% Similarity=0.275 Sum_probs=83.6
Q ss_pred CCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC------CCCcEEEEcccccccc-ccCCCccEE
Q 026558 46 SHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDE-FQTGSFDSV 117 (237)
Q Consensus 46 ~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~~-~~~~~fD~I 117 (237)
+.+++||+||||.|..+..++++. ..+++.+|+++.+++.|++.+.. .++++++.+|+..... .+.++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 444599999999999999999875 35899999999999999998732 3689999999876531 235689999
Q ss_pred EeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+++..-... ....-....+++.+.++|+|||+++.+.
T Consensus 170 i~D~~dp~~---~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVG---PAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCC---chhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 997543211 1111235678999999999999998754
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.9e-11 Score=104.14 Aligned_cols=111 Identities=16% Similarity=0.181 Sum_probs=83.9
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccc---ccCCCccEEEecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDE---FQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~---~~~~~fD~I~~~~ 121 (237)
.+|||+|||+|..+..+++.. ..+++++|+++.+++.+++++. +..++.++++|+.+++. +..++||.|+++.
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~Da 333 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLDA 333 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEeC
Confidence 499999999999999998863 3489999999999999999985 33478999999987642 2356899999875
Q ss_pred ccceecc--CCC------ChH-------HHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 122 TLDSLLC--GSN------SRQ-------NATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 122 ~l~~~~~--~~~------~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+...... ..+ ++. .+.++|+++.+.|||||+++..|.+
T Consensus 334 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 334 PCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred CCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 5321100 000 111 2578999999999999999988753
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-12 Score=100.50 Aligned_cols=112 Identities=21% Similarity=0.248 Sum_probs=86.8
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc-ccCCCc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE-FQTGSF 114 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~-~~~~~f 114 (237)
+.++|...-...=.++||||||||-.+..+...- .+++|+|||+.|++.|.++-- --...+.|+..+.. ..+++|
T Consensus 114 l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a-~~ltGvDiS~nMl~kA~eKg~---YD~L~~Aea~~Fl~~~~~er~ 189 (287)
T COG4976 114 LAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMA-DRLTGVDISENMLAKAHEKGL---YDTLYVAEAVLFLEDLTQERF 189 (287)
T ss_pred HHHHHHhccCCccceeeecccCcCcccHhHHHHH-hhccCCchhHHHHHHHHhccc---hHHHHHHHHHHHhhhccCCcc
Confidence 5555655433322599999999999998887774 489999999999999998841 11234455543332 457899
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
|+|++..++.++ -....++.-+...|+|||.+.++.-
T Consensus 190 DLi~AaDVl~Yl-------G~Le~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 190 DLIVAADVLPYL-------GALEGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred cchhhhhHHHhh-------cchhhHHHHHHHhcCCCceEEEEec
Confidence 999999999998 7888999999999999999998763
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-11 Score=95.88 Aligned_cols=109 Identities=14% Similarity=0.142 Sum_probs=80.0
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccC
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQT 111 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~ 111 (237)
...++..+..+++.+|||||||+|..+..++... ...++++|+.+...+.|++++. +..++.++++|..... ...
T Consensus 61 ~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~-~~~ 139 (209)
T PF01135_consen 61 VARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW-PEE 139 (209)
T ss_dssp HHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT-GGG
T ss_pred HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc-ccC
Confidence 4455555544444599999999999999888763 2379999999999999999985 4458999999987654 345
Q ss_pred CCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
..||.|++......+ =..+.+.|++||++++...
T Consensus 140 apfD~I~v~~a~~~i-------------p~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 140 APFDRIIVTAAVPEI-------------PEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp -SEEEEEESSBBSS---------------HHHHHTEEEEEEEEEEES
T ss_pred CCcCEEEEeeccchH-------------HHHHHHhcCCCcEEEEEEc
Confidence 789999998766543 2346778999999998764
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.7e-11 Score=102.85 Aligned_cols=112 Identities=15% Similarity=0.221 Sum_probs=79.9
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCC-CcEE--EEcccccccc-ccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRP-QLKY--IKMDVRQMDE-FQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~-~~~~--~~~d~~~~~~-~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|..+..+++.. ..+++++|+++.+++.++++++... .+.+ ..+|....+. ...++||.|+++.+.
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPc 319 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAPC 319 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcCCC
Confidence 499999999999999998864 3599999999999999999985311 2333 5566654431 145789999987543
Q ss_pred ceecc--CCC------Ch-------HHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 124 DSLLC--GSN------SR-------QNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 124 ~~~~~--~~~------~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
..... ..+ .+ ..+..+|+++.++|+|||++++.|.+-
T Consensus 320 Sg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 320 SATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred CCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 32100 000 11 125779999999999999999988644
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.8e-11 Score=101.35 Aligned_cols=119 Identities=15% Similarity=0.215 Sum_probs=86.6
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CC--CCcEEEEccccccc-cc--
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NR--PQLKYIKMDVRQMD-EF-- 109 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~--~~~~~~~~d~~~~~-~~-- 109 (237)
+..+.... ++. +|||+|||+|.+++.++..+..+++++|+|+.+++.|++++. +. .+++++++|+.+.. .+
T Consensus 212 R~~~~~~~-~g~-rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~ 289 (396)
T PRK15128 212 RLATRRYV-ENK-RVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD 289 (396)
T ss_pred HHHHHHhc-CCC-eEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHh
Confidence 33444443 343 899999999999988776665599999999999999999984 22 36889999998753 12
Q ss_pred cCCCccEEEeccccceeccCC----CChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 110 QTGSFDSVVDKGTLDSLLCGS----NSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 110 ~~~~fD~I~~~~~l~~~~~~~----~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
..++||+|+++.+.-.- .. ........++..+.++|+|||.++..+.+
T Consensus 290 ~~~~fDlVilDPP~f~~--~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 290 RGEKFDVIVMDPPKFVE--NKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred cCCCCCEEEECCCCCCC--ChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 24689999999764221 00 00124566777889999999999887654
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.4e-11 Score=92.99 Aligned_cols=107 Identities=14% Similarity=0.231 Sum_probs=79.0
Q ss_pred cEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCC---------------------------------
Q 026558 50 RILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQ--------------------------------- 95 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~--------------------------------- 95 (237)
.+|||||.+|.++..+++.. ...+.|+||++..++.|++++.....
T Consensus 61 ~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t~~ 140 (288)
T KOG2899|consen 61 QALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFTTD 140 (288)
T ss_pred eeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccccccc
Confidence 89999999999999999985 44899999999999999998842111
Q ss_pred ----cEEEEccc----cccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 96 ----LKYIKMDV----RQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 96 ----~~~~~~d~----~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+.|...+. .++..+....||+|+|-.+--+++ .+.+.+-...+++.+.++|.|||+|++..
T Consensus 141 ~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIH-LNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 141 FPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIH-LNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred CCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEe-cccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 11111111 001113467899999977655542 23456788999999999999999998864
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.7e-10 Score=93.98 Aligned_cols=121 Identities=15% Similarity=0.142 Sum_probs=93.7
Q ss_pred hHHHHHhhCCCCC-CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC--CCcEEEEc-cccccccccC
Q 026558 36 LAPLIKLYVPSHH-QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKM-DVRQMDEFQT 111 (237)
Q Consensus 36 ~~~~l~~~~~~~~-~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~--~~~~~~~~-d~~~~~~~~~ 111 (237)
+...+-.+..... ..|||.-||||.+++.+.-.|. .++|+|++..|++-|+.|++.. ....+... |+.+++ +++
T Consensus 185 lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp-l~~ 262 (347)
T COG1041 185 LARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP-LRD 262 (347)
T ss_pred HHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC-CCC
Confidence 4444444443333 3999999999999999988875 9999999999999999999754 35555555 999999 888
Q ss_pred CCccEEEeccccceeccCCCC--hHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 112 GSFDSVVDKGTLDSLLCGSNS--RQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~~~~~--~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.++|.|++..+..-....... .+...++|+.+.++|++||++++...
T Consensus 263 ~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 263 NSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 889999999876543211111 35578899999999999999999875
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-10 Score=93.52 Aligned_cols=96 Identities=17% Similarity=0.272 Sum_probs=81.6
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||||+|.|.++..+++.. ..+++..|. |.+++.+++ .++++++.+|+.+ + ++. +|+++...+||.+
T Consensus 102 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----~~rv~~~~gd~f~-~-~P~--~D~~~l~~vLh~~- 171 (241)
T PF00891_consen 102 KTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----ADRVEFVPGDFFD-P-LPV--ADVYLLRHVLHDW- 171 (241)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----TTTEEEEES-TTT-C-CSS--ESEEEEESSGGGS-
T ss_pred cEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----ccccccccccHHh-h-hcc--ccceeeehhhhhc-
Confidence 489999999999999999886 349999998 999999998 3799999999983 2 444 9999999999998
Q ss_pred cCCCChHHHHHHHHHHHHhcCCC--cEEEEEEc
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDK--GVYILVTY 158 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pg--G~l~~~~~ 158 (237)
+.++...+|+++.+.|+|| |++++...
T Consensus 172 ----~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 172 ----SDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp -----HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred ----chHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 7889999999999999999 99999774
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-10 Score=104.20 Aligned_cols=110 Identities=15% Similarity=0.204 Sum_probs=83.3
Q ss_pred CCCCcEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHc--C-------CCCCcEEEEccccccccccCCCcc
Q 026558 46 SHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKY--S-------NRPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 46 ~~~~~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~--~-------~~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
+++++|||+|||+|..+..++++.. .+++++|+++++++.++++. . ..++++++.+|+.+......++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 3345999999999999999998753 69999999999999999942 1 136789999999875423457899
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+|+++.+-... .........++++.+.++|+|||++++..
T Consensus 376 vIi~D~~~~~~--~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPDPSN--PALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCCCCC--cchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 99998543211 00011234678999999999999998865
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-10 Score=93.15 Aligned_cols=93 Identities=22% Similarity=0.314 Sum_probs=77.8
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~ 128 (237)
.++||||+|.|..+..++... .+++++|+|+.|....+++ +.+++ +..++. -.+.+||+|.|-++|+.-
T Consensus 96 ~~lLDlGAGdG~VT~~l~~~f-~~v~aTE~S~~Mr~rL~~k-----g~~vl--~~~~w~-~~~~~fDvIscLNvLDRc-- 164 (265)
T PF05219_consen 96 KSLLDLGAGDGEVTERLAPLF-KEVYATEASPPMRWRLSKK-----GFTVL--DIDDWQ-QTDFKFDVISCLNVLDRC-- 164 (265)
T ss_pred CceEEecCCCcHHHHHHHhhc-ceEEeecCCHHHHHHHHhC-----CCeEE--ehhhhh-ccCCceEEEeehhhhhcc--
Confidence 489999999999999998775 4999999999998888876 33433 444444 235689999999999988
Q ss_pred CCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 129 GSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
..+..+|+.+++.|+|+|++++..
T Consensus 165 -----~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 165 -----DRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred -----CCHHHHHHHHHHHhCCCCEEEEEE
Confidence 889999999999999999998864
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.19 E-value=1e-10 Score=94.31 Aligned_cols=98 Identities=12% Similarity=0.137 Sum_probs=78.3
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccc-cc----cCCCccEEE
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMD-EF----QTGSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~-~~----~~~~fD~I~ 118 (237)
++|||+|||+|..+..++... ..+++++|+++++++.|+++++. ..+++++.+|+.+.. .+ +.++||+|+
T Consensus 70 ~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~Vf 149 (234)
T PLN02781 70 KNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAF 149 (234)
T ss_pred CEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEE
Confidence 489999999999888887652 35999999999999999999853 246899999997642 11 246899998
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
.... ......+++.+.+.|+|||++++-
T Consensus 150 iDa~----------k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 150 VDAD----------KPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred ECCC----------HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 8643 245678899999999999998763
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.4e-10 Score=98.95 Aligned_cols=98 Identities=16% Similarity=0.292 Sum_probs=75.7
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccc-c--ccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMD-E--FQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~-~--~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.|++++. +..+++++++|+.+.. . +..++||+|+++.+-
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr 377 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPPR 377 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcCC
Confidence 499999999999999999886 499999999999999999874 3357999999997532 1 335679999998654
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.- ....++.+.+ ++|++++++...
T Consensus 378 ~g----------~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 378 AG----------AAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred cC----------hHHHHHHHHh-cCCCeEEEEEeC
Confidence 32 2345554544 688888877763
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.6e-10 Score=89.08 Aligned_cols=103 Identities=17% Similarity=0.271 Sum_probs=80.5
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-C-CCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-R-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.++||.|+|-|+.+..++-..+.+|-.+|..+..++.|++.+.. . .-.++.+..+.++. ....+||+|++-.++.|+
T Consensus 57 ~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~-P~~~~YDlIW~QW~lghL 135 (218)
T PF05891_consen 57 NRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFT-PEEGKYDLIWIQWCLGHL 135 (218)
T ss_dssp SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG-----TT-EEEEEEES-GGGS
T ss_pred ceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhcc-CCCCcEeEEEehHhhccC
Confidence 49999999999999988766567999999999999999988754 2 23567888888875 335799999999999999
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+.++..++|+++...|+|+|.+++-.
T Consensus 136 -----TD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 136 -----TDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp ------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----CHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 88999999999999999999999844
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.5e-10 Score=84.97 Aligned_cols=73 Identities=23% Similarity=0.355 Sum_probs=65.5
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-CCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.|+|+|||||.+++..+-.|...|+++|+++++++.++++.+ ...+++|+.+|+.+.. ..+|.++.+.++...
T Consensus 48 ~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~----~~~dtvimNPPFG~~ 121 (198)
T COG2263 48 TVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR----GKFDTVIMNPPFGSQ 121 (198)
T ss_pred EEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC----CccceEEECCCCccc
Confidence 799999999999999999997799999999999999999985 3457999999999985 678999999988755
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-09 Score=91.86 Aligned_cols=99 Identities=13% Similarity=0.156 Sum_probs=73.9
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++++ +..+++|+++|+.++.....+.||+|+++.+-.-+
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~G~ 253 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRRGI 253 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCCCc
Confidence 489999999999999999987 499999999999999999984 33579999999987642223579999998652211
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
...+.++...+.|++++++...
T Consensus 254 ----------~~~~~~~l~~~~~~~ivyvsc~ 275 (315)
T PRK03522 254 ----------GKELCDYLSQMAPRFILYSSCN 275 (315)
T ss_pred ----------cHHHHHHHHHcCCCeEEEEECC
Confidence 2222233344678777776654
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.7e-10 Score=89.22 Aligned_cols=111 Identities=20% Similarity=0.281 Sum_probs=80.1
Q ss_pred cEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccc-c-ccCCCccEEEeccccc
Q 026558 50 RILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMD-E-FQTGSFDSVVDKGTLD 124 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~-~-~~~~~fD~I~~~~~l~ 124 (237)
.+||||||.|.++..+++.. ...++|+|++...+..+.+++. +..|+.++++|+..+. . ++++++|.|+...+==
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 89999999999999999875 3499999999999999988874 5679999999998733 2 4568899998764311
Q ss_pred eeccCCC--ChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 125 SLLCGSN--SRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 125 ~~~~~~~--~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
+. -.-+ -+-....+++.+.++|+|||.+.+.|-...
T Consensus 100 Wp-K~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~ 137 (195)
T PF02390_consen 100 WP-KKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEE 137 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HH
T ss_pred Cc-ccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHH
Confidence 10 0000 011345699999999999999999985553
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.5e-10 Score=97.56 Aligned_cols=124 Identities=15% Similarity=0.100 Sum_probs=95.1
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--C--CCCcEEEEccccccccc--
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--N--RPQLKYIKMDVRQMDEF-- 109 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~--~~~~~~~~~d~~~~~~~-- 109 (237)
.+..+...+. ++ +||++-|=||.+++.++..|..+++.||+|..++++|++|++ + ....+++++|+.++...
T Consensus 208 ~R~~l~~~~~-Gk-rvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~ 285 (393)
T COG1092 208 NRRALGELAA-GK-RVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAE 285 (393)
T ss_pred HHHHHhhhcc-CC-eEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHH
Confidence 4555666555 54 999999999999999999987799999999999999999985 2 23578999999886422
Q ss_pred -cCCCccEEEeccccceeccC--CCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 110 -QTGSFDSVVDKGTLDSLLCG--SNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 110 -~~~~fD~I~~~~~l~~~~~~--~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
...+||+|+.+.+--.--.. ..-..+...++..+.++|+|||++++.+....
T Consensus 286 ~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 286 RRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred hcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 23589999998652111000 01235778899999999999999999886553
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-09 Score=81.90 Aligned_cols=143 Identities=20% Similarity=0.243 Sum_probs=100.3
Q ss_pred hhhhHHHhccCCCCceeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHc
Q 026558 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKY 90 (237)
Q Consensus 13 ~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~ 90 (237)
+.-.+.+|+.-.+.|--. +.+..-...+.......++|||||+|..+.++++.- ...+.++|++|.+++..++..
T Consensus 12 ~~~f~dVYEPaEDTFlLl---DaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA 88 (209)
T KOG3191|consen 12 RLDFSDVYEPAEDTFLLL---DALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETA 88 (209)
T ss_pred hhhhhhccCccchhhHHH---HHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHH
Confidence 333467777776665421 112222222222223489999999999999998863 457899999999999988777
Q ss_pred C-CCCCcEEEEccccccccccCCCccEEEecccccee--------------ccCCCChHHHHHHHHHHHHhcCCCcEEEE
Q 026558 91 S-NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL--------------LCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (237)
Q Consensus 91 ~-~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~--------------~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 155 (237)
. +..+++.++.|+.... ..++.|+++-+.+.-.- ..+.++++-..+++..+-.+|.|.|.+++
T Consensus 89 ~~n~~~~~~V~tdl~~~l--~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Yl 166 (209)
T KOG3191|consen 89 RCNRVHIDVVRTDLLSGL--RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYL 166 (209)
T ss_pred HhcCCccceeehhHHhhh--ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEe
Confidence 4 3356888999998764 45899999998664221 23345666778889999999999999999
Q ss_pred EEcCC
Q 026558 156 VTYGA 160 (237)
Q Consensus 156 ~~~~~ 160 (237)
+....
T Consensus 167 v~~~~ 171 (209)
T KOG3191|consen 167 VALRA 171 (209)
T ss_pred eehhh
Confidence 87544
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=99.11 E-value=9e-10 Score=92.93 Aligned_cols=112 Identities=20% Similarity=0.278 Sum_probs=84.0
Q ss_pred CCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC------CCCcEEEEccccccccccCCCccEE
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDEFQTGSFDSV 117 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~~~~~~~fD~I 117 (237)
.+.+++||.||+|.|..+.++++.. ..+++.+|+++.+++.|++.+.. .++++++.+|+........++||+|
T Consensus 101 ~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 101 HPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence 3344589999999999999998864 45899999999999999998842 4689999999988643446789999
Q ss_pred EeccccceeccCCCChHHHHHHHH-HHHHhcCCCcEEEEEE
Q 026558 118 VDKGTLDSLLCGSNSRQNATQMLK-EVWRVLKDKGVYILVT 157 (237)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~-~~~~~L~pgG~l~~~~ 157 (237)
++... +....++...-...++++ .+.+.|+|||++++..
T Consensus 181 i~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 181 IGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred EecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 99842 211000001123457787 8999999999998764
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.6e-09 Score=84.01 Aligned_cols=105 Identities=19% Similarity=0.282 Sum_probs=67.9
Q ss_pred CCcChHHHHHhhCCCCC-CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccccc
Q 026558 32 KYPSLAPLIKLYVPSHH-QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQ 110 (237)
Q Consensus 32 ~~~~~~~~l~~~~~~~~-~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~ 110 (237)
+..++..++..+...+. ..|.|+|||.+.++..+. .++ .|...|+-+ .+-.+..+|+.+.| ++
T Consensus 56 P~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva-------------~n~~Vtacdia~vP-L~ 119 (219)
T PF05148_consen 56 PVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVA-------------PNPRVTACDIANVP-LE 119 (219)
T ss_dssp SS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH---S----EEEEESS--------------SSTTEEES-TTS-S---
T ss_pred CCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcc-cCc-eEEEeeccC-------------CCCCEEEecCccCc-CC
Confidence 55566666766654443 389999999999986654 223 799999855 24468889999999 89
Q ss_pred CCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 111 ~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+++.|+++....|.. .+...++.++.|+|||||.+.+.....
T Consensus 120 ~~svDv~VfcLSLMG--------Tn~~~fi~EA~RvLK~~G~L~IAEV~S 161 (219)
T PF05148_consen 120 DESVDVAVFCLSLMG--------TNWPDFIREANRVLKPGGILKIAEVKS 161 (219)
T ss_dssp TT-EEEEEEES---S--------S-HHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred CCceeEEEEEhhhhC--------CCcHHHHHHHHheeccCcEEEEEEecc
Confidence 999999999666543 578999999999999999999987543
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.9e-10 Score=88.14 Aligned_cols=102 Identities=21% Similarity=0.330 Sum_probs=70.1
Q ss_pred cEEEEccCCch----hHHHHHHc-----C-CCeEEEEeCCHHHHHHHHHHc------C---------------C------
Q 026558 50 RILIVGCGNSA----FSEGMVDD-----G-YEDVVNVDISSVVIEAMMKKY------S---------------N------ 92 (237)
Q Consensus 50 ~iLdlG~G~G~----~~~~~~~~-----~-~~~~~~vD~s~~~~~~a~~~~------~---------------~------ 92 (237)
+|+..||++|. +++.+.+. + ..+++|+|+|+.+++.|++-. . +
T Consensus 34 rIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~ 113 (196)
T PF01739_consen 34 RIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYRVK 113 (196)
T ss_dssp EEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-
T ss_pred EEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCceeEC
Confidence 99999999994 33444441 1 239999999999999998332 0 1
Q ss_pred ---CCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 93 ---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 93 ---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...+.|.+.|+.+.+ ...+.||+|+|.+++-++ +.+....+++.+++.|+|||.|++-.
T Consensus 114 ~~lr~~V~F~~~NL~~~~-~~~~~fD~I~CRNVlIYF-----~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 114 PELRKMVRFRRHNLLDPD-PPFGRFDLIFCRNVLIYF-----DPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp HHHHTTEEEEE--TT-S-------EEEEEE-SSGGGS------HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred hHHcCceEEEecccCCCC-cccCCccEEEecCEEEEe-----CHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 025889999998832 457899999999999998 77888999999999999999998854
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=90.08 Aligned_cols=103 Identities=14% Similarity=0.213 Sum_probs=79.1
Q ss_pred cEEEEccCCch----hHHHHHHcC-----CCeEEEEeCCHHHHHHHHHHcC-------------------------C---
Q 026558 50 RILIVGCGNSA----FSEGMVDDG-----YEDVVNVDISSVVIEAMMKKYS-------------------------N--- 92 (237)
Q Consensus 50 ~iLdlG~G~G~----~~~~~~~~~-----~~~~~~vD~s~~~~~~a~~~~~-------------------------~--- 92 (237)
+|+..||+||. +++.+.+.. ..+++|+|||+.+++.|++-.- +
T Consensus 118 rIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~ 197 (287)
T PRK10611 118 RVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVR 197 (287)
T ss_pred EEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEE
Confidence 99999999994 333344431 2389999999999999985520 0
Q ss_pred -----CCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 93 -----RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 93 -----~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...+.|.+.|+.+.+....+.||+|+|.+++.|+ +.+....+++.+.+.|+|||+|++-.
T Consensus 198 v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-----~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 198 VRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-----DKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC-----CHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 0246788888876441235789999999999888 77889999999999999999887653
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2e-09 Score=88.12 Aligned_cols=72 Identities=17% Similarity=0.310 Sum_probs=62.8
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++...+++.++++|+.+.+ ++ .||.|+++.+++
T Consensus 31 ~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~-~~--~~d~Vv~NlPy~ 102 (258)
T PRK14896 31 DPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVD-LP--EFNKVVSNLPYQ 102 (258)
T ss_pred CeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCC-ch--hceEEEEcCCcc
Confidence 4999999999999999999864 999999999999999998865568999999998876 43 489999987764
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=85.23 Aligned_cols=119 Identities=16% Similarity=0.199 Sum_probs=91.2
Q ss_pred CcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcC--CCCCcE-EEEcccccccc
Q 026558 33 YPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS--NRPQLK-YIKMDVRQMDE 108 (237)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~--~~~~~~-~~~~d~~~~~~ 108 (237)
.+.+.+.++..++....+|||||||||....++++... ....-.|.++..+...+.... +.+|+. .+..|+...+.
T Consensus 11 k~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w 90 (204)
T PF06080_consen 11 KDPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPW 90 (204)
T ss_pred HhHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCC
Confidence 34477788888777762499999999999999999863 367788999888766665542 334443 45667765420
Q ss_pred -------ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 109 -------FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 109 -------~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
+..+.||.|++.+++|-+ +++....+++.+.++|++||.|++-
T Consensus 91 ~~~~~~~~~~~~~D~i~~~N~lHI~-----p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 91 PWELPAPLSPESFDAIFCINMLHIS-----PWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred ccccccccCCCCcceeeehhHHHhc-----CHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 135689999999999888 8899999999999999999999874
|
The function of this family is unknown. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=86.44 Aligned_cols=112 Identities=16% Similarity=0.188 Sum_probs=85.4
Q ss_pred ChHHHHHhhCC-CCCCcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEE-ccccccc
Q 026558 35 SLAPLIKLYVP-SHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIK-MDVRQMD 107 (237)
Q Consensus 35 ~~~~~l~~~~~-~~~~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~-~d~~~~~ 107 (237)
.-..++..++. .+.++|||||++.|..+++++... ..+++.+|++++..+.|+++++.. +.+..+. +|+.+..
T Consensus 46 e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l 125 (219)
T COG4122 46 ETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVL 125 (219)
T ss_pred hHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHH
Confidence 33444444332 233499999999999999998865 358999999999999999999532 3477777 5886653
Q ss_pred c-ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 108 E-FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 108 ~-~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
. ...++||+||... ...+...+++.+.++|+|||++++-
T Consensus 126 ~~~~~~~fDliFIDa----------dK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 126 SRLLDGSFDLVFIDA----------DKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred HhccCCCccEEEEeC----------ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 2 3468999998864 3467789999999999999999873
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.6e-09 Score=88.10 Aligned_cols=73 Identities=19% Similarity=0.283 Sum_probs=61.9
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++.. ++++++++|+.+++ +++-.+|.|+++.+..
T Consensus 44 ~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~-~~v~~i~~D~~~~~-~~~~~~~~vv~NlPY~ 116 (272)
T PRK00274 44 DNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE-DNLTIIEGDALKVD-LSELQPLKVVANLPYN 116 (272)
T ss_pred CeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc-CceEEEEChhhcCC-HHHcCcceEEEeCCcc
Confidence 4899999999999999999976 999999999999999998754 68999999999876 4332268899886643
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.4e-09 Score=86.57 Aligned_cols=84 Identities=20% Similarity=0.273 Sum_probs=65.8
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCcc-
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFD- 115 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD- 115 (237)
..++......+..+|||+|||+|.++..+++.+. .++++|+++.+++.+++++...+++.++.+|+.+.+ ++ .+|
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~-~~--~~d~ 94 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVD-LP--DFPK 94 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCC-hh--HcCC
Confidence 4444443333334999999999999999999975 799999999999999988755568999999998876 33 456
Q ss_pred --EEEeccccc
Q 026558 116 --SVVDKGTLD 124 (237)
Q Consensus 116 --~I~~~~~l~ 124 (237)
+|+++.+++
T Consensus 95 ~~~vvsNlPy~ 105 (253)
T TIGR00755 95 QLKVVSNLPYN 105 (253)
T ss_pred cceEEEcCChh
Confidence 888876643
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.9e-09 Score=87.24 Aligned_cols=98 Identities=12% Similarity=0.082 Sum_probs=80.0
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccc-cc----cCCCccEEE
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMD-EF----QTGSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~-~~----~~~~fD~I~ 118 (237)
++|||+|+++|..++++++.. ..+++.+|.+++..+.|+++++. ..+++++.+|+.+.. .+ ..++||+||
T Consensus 120 k~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VF 199 (278)
T PLN02476 120 ERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAF 199 (278)
T ss_pred CeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEE
Confidence 489999999999999998752 34899999999999999999952 247999999997642 22 136899999
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
.... ..+...+++.+.+.|+|||++++-
T Consensus 200 IDa~----------K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 200 VDAD----------KRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred ECCC----------HHHHHHHHHHHHHhcCCCcEEEEe
Confidence 8753 367788999999999999998773
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.8e-09 Score=84.12 Aligned_cols=102 Identities=20% Similarity=0.191 Sum_probs=83.4
Q ss_pred CCCCCcEEEEccCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHcCC--CC-CcEEEEccccccccccCCCccEEEe
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSN--RP-QLKYIKMDVRQMDEFQTGSFDSVVD 119 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~-~-~~~~~~vD~s~~~~~~a~~~~~~--~~-~~~~~~~d~~~~~~~~~~~fD~I~~ 119 (237)
.++. +|||.|.|+|.++..++.. + ..+++.+|+.++..+.|++|++. .. ++.+..+|+.+.. + ...||+|+.
T Consensus 93 ~pg~-rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~-~-~~~vDav~L 169 (256)
T COG2519 93 SPGS-RVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI-D-EEDVDAVFL 169 (256)
T ss_pred CCCC-EEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc-c-ccccCEEEE
Confidence 4444 9999999999999999963 3 35999999999999999999953 33 4888889998875 3 348999988
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
+. .++.++++++.++|+|||.+++....-.
T Consensus 170 Dm------------p~PW~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 170 DL------------PDPWNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred cC------------CChHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 53 5778899999999999999988764433
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.4e-10 Score=87.72 Aligned_cols=101 Identities=19% Similarity=0.281 Sum_probs=88.5
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceeccC
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCG 129 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~ 129 (237)
.++|||||-|.+...+...+..+++.+|.|-.|++.++..-...-.+....+|-..++ |.++++|+|+++..+|+.
T Consensus 75 ~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ld-f~ens~DLiisSlslHW~--- 150 (325)
T KOG2940|consen 75 TAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLD-FKENSVDLIISSLSLHWT--- 150 (325)
T ss_pred ceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhccc-ccccchhhhhhhhhhhhh---
Confidence 8999999999999999998877999999999999999876432224567788888888 999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 130 SNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 130 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.++...+.++...|||+|.++...+
T Consensus 151 ----NdLPg~m~~ck~~lKPDg~Fiasml 175 (325)
T KOG2940|consen 151 ----NDLPGSMIQCKLALKPDGLFIASML 175 (325)
T ss_pred ----ccCchHHHHHHHhcCCCccchhHHh
Confidence 8889999999999999999987544
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-09 Score=86.35 Aligned_cols=99 Identities=17% Similarity=0.258 Sum_probs=79.5
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccc-cc----cCCCccEEE
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMD-EF----QTGSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~-~~----~~~~fD~I~ 118 (237)
++||||||++|..+.++++.- .++++.+|++++..+.|++.+.. ..+++++.+|+.+.. .+ ..+.||+||
T Consensus 47 k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VF 126 (205)
T PF01596_consen 47 KRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVF 126 (205)
T ss_dssp SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEE
T ss_pred ceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEE
Confidence 489999999999999999863 35999999999999999998852 247999999997642 11 135799999
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+.. ..+...+++.+.++|+|||++++-.
T Consensus 127 iDa~----------K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 127 IDAD----------KRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEST----------GGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred Eccc----------ccchhhHHHHHhhhccCCeEEEEcc
Confidence 8753 3567888999999999999998743
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.4e-09 Score=85.35 Aligned_cols=105 Identities=20% Similarity=0.257 Sum_probs=83.6
Q ss_pred cEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccc--ccCCCccEEEeccccc
Q 026558 50 RILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDE--FQTGSFDSVVDKGTLD 124 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~--~~~~~fD~I~~~~~l~ 124 (237)
.+||||||.|.++..+|+..+ ..++|||+....+..|.+++. +..|+.+++.|+..+.. +++++.|-|+.+.+
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP-- 128 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP-- 128 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC--
Confidence 899999999999999999863 489999999999999998884 33499999999987543 34558999987643
Q ss_pred eeccCCCChH-------HHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 125 SLLCGSNSRQ-------NATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 125 ~~~~~~~~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
++.+.. -...+++.+.++|+|||.+.+.|-..
T Consensus 129 ----DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~ 167 (227)
T COG0220 129 ----DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE 167 (227)
T ss_pred ----CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence 221211 34569999999999999999998544
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.6e-09 Score=83.80 Aligned_cols=107 Identities=21% Similarity=0.307 Sum_probs=75.9
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCe---------EEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCcc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YED---------VVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~---------~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
..|||..||+|.+.++.+..+ ... ++|+|+++.+++.|++|+.. ...+.+.+.|+.+++ +..+.+|
T Consensus 30 ~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~-~~~~~~d 108 (179)
T PF01170_consen 30 DVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP-LPDGSVD 108 (179)
T ss_dssp S-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG-GTTSBSC
T ss_pred CEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc-cccCCCC
Confidence 489999999999999887654 223 88999999999999999852 235789999999998 7788999
Q ss_pred EEEeccccceeccCC-CChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 116 SVVDKGTLDSLLCGS-NSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+|+++.++..-.... ........+++++.++|++ ..+++.+
T Consensus 109 ~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~ 150 (179)
T PF01170_consen 109 AIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT 150 (179)
T ss_dssp EEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred EEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence 999998876432110 1134556788999999998 4444443
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.7e-09 Score=80.78 Aligned_cols=101 Identities=20% Similarity=0.251 Sum_probs=70.8
Q ss_pred CcEEEEccCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCC-----CCCcEEEEccccccc---cccCCCccEEEe
Q 026558 49 QRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSN-----RPQLKYIKMDVRQMD---EFQTGSFDSVVD 119 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~d~~~~~---~~~~~~fD~I~~ 119 (237)
.+|||||||+|..++.++.. +..+|+.+|.++ .++.++.++.. ..++.+...|..+.. .....+||+|+.
T Consensus 47 ~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~Ila 125 (173)
T PF10294_consen 47 KRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILA 125 (173)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEEE
T ss_pred ceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEEE
Confidence 49999999999999999988 556999999999 99999988742 246778777765421 134568999999
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
..++..- +....+++.+.++|+++|.+++..
T Consensus 126 sDv~Y~~-------~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 126 SDVLYDE-------ELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp ES--S-G-------GGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred ecccchH-------HHHHHHHHHHHHHhCCCCEEEEEe
Confidence 9988765 888999999999999999866655
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.6e-09 Score=89.12 Aligned_cols=99 Identities=11% Similarity=0.141 Sum_probs=75.3
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+|||+|||+|.++..++..+ .+++|+|+++.+++.|+++.+ +..++++.++|+.+.......+||+|+.+.+-..+
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~ 313 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRGI 313 (374)
T ss_pred CEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCCC
Confidence 489999999999999999876 499999999999999999984 33478999999976531122469999998764322
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
...+++.+. .++|++++++...
T Consensus 314 ---------~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 314 ---------GKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred ---------cHHHHHHHH-hcCCCeEEEEEeC
Confidence 234444444 4789888887763
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.6e-09 Score=91.74 Aligned_cols=98 Identities=11% Similarity=0.210 Sum_probs=73.9
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccc-c--ccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMD-E--FQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~-~--~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|.++..+++... +++|+|+++.+++.|++++. +..+++++.+|+.+.. . +...+||+|+.+.+-
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~-~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr 372 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAK-SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPR 372 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCC-EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCC
Confidence 4899999999999999998764 89999999999999999874 3458999999997632 1 234579999987552
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.-+ ...+++.+. .++|++++++..
T Consensus 373 ~G~---------~~~~l~~l~-~l~~~~ivyvsc 396 (431)
T TIGR00479 373 KGC---------AAEVLRTII-ELKPERIVYVSC 396 (431)
T ss_pred CCC---------CHHHHHHHH-hcCCCEEEEEcC
Confidence 211 244555544 378888776654
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.6e-09 Score=86.40 Aligned_cols=112 Identities=21% Similarity=0.313 Sum_probs=88.6
Q ss_pred hCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC------CCCcEEEEccccccccccCCCcc
Q 026558 43 YVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 43 ~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
..++..++||-||.|.|..+.+++++. ..+++.+||++.+++.|++.+.. .++++++..|..++-.-...+||
T Consensus 72 ~ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fD 151 (282)
T COG0421 72 LAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFD 151 (282)
T ss_pred hhCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCC
Confidence 334444599999999999999999987 56999999999999999999842 36889999999886533344899
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+|+++..=. . ++...-....+++.+.++|+++|+++..+
T Consensus 152 vIi~D~tdp-~--gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 152 VIIVDSTDP-V--GPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred EEEEcCCCC-C--CcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 999985422 2 22222356889999999999999999984
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1e-08 Score=84.80 Aligned_cols=85 Identities=9% Similarity=0.126 Sum_probs=67.2
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCC-
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTG- 112 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~- 112 (237)
+.+.+..+...++..+||.+||.|..+..+++.. ..+|+|+|.++.+++.|++++....++.++++|+.++......
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~ 87 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEG 87 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcC
Confidence 3556666654444599999999999999999885 3599999999999999999885445789999999886532222
Q ss_pred --CccEEEec
Q 026558 113 --SFDSVVDK 120 (237)
Q Consensus 113 --~fD~I~~~ 120 (237)
++|.|+.+
T Consensus 88 ~~~vDgIl~D 97 (296)
T PRK00050 88 LGKVDGILLD 97 (296)
T ss_pred CCccCEEEEC
Confidence 79999986
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-09 Score=84.03 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=78.1
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--C-CCcEEEEccccccc-cc--cCCCccEEEeccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--R-PQLKYIKMDVRQMD-EF--QTGSFDSVVDKGT 122 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~-~~~~~~~~d~~~~~-~~--~~~~fD~I~~~~~ 122 (237)
.++||+.||+|.++.+++++|..+++.+|.++.+++..+++++. . ..+.++..|+.... .. ...+||+|+.+.+
T Consensus 44 ~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPP 123 (183)
T PF03602_consen 44 ARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPP 123 (183)
T ss_dssp -EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--S
T ss_pred CeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCC
Confidence 49999999999999999999978999999999999999999852 1 25788899975432 12 4689999999988
Q ss_pred cceeccCCCChHHHHHHHHHHH--HhcCCCcEEEEEEcCC
Q 026558 123 LDSLLCGSNSRQNATQMLKEVW--RVLKDKGVYILVTYGA 160 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~--~~L~pgG~l~~~~~~~ 160 (237)
...- .....+++.+. .+|+++|.+++.....
T Consensus 124 Y~~~-------~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 124 YAKG-------LYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp TTSC-------HHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred cccc-------hHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 7643 22466777776 7899999998877433
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.2e-08 Score=72.88 Aligned_cols=105 Identities=15% Similarity=0.184 Sum_probs=75.3
Q ss_pred hHHHHHhhCCCCC-CcEEEEccCCch-hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCC
Q 026558 36 LAPLIKLYVPSHH-QRILIVGCGNSA-FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 36 ~~~~l~~~~~~~~-~~iLdlG~G~G~-~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~ 113 (237)
+.+++....+... .+|||+|||+|. ++..+++.|+ +|+++|+++..++.++++ .+.++++|+.+...-.-+.
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~-----~~~~v~dDlf~p~~~~y~~ 77 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL-----GLNAFVDDLFNPNLEIYKN 77 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh-----CCeEEECcCCCCCHHHHhc
Confidence 4555555544332 489999999995 8888888886 999999999999999887 3689999998876222467
Q ss_pred ccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 114 fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+|+|.+..+ +......+.++.+.+. .-+++..+
T Consensus 78 a~liysirp----------p~el~~~~~~la~~~~--~~~~i~~l 110 (134)
T PRK04148 78 AKLIYSIRP----------PRDLQPFILELAKKIN--VPLIIKPL 110 (134)
T ss_pred CCEEEEeCC----------CHHHHHHHHHHHHHcC--CCEEEEcC
Confidence 999998643 3445555555555544 45666554
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.94 E-value=1e-08 Score=80.03 Aligned_cols=102 Identities=9% Similarity=0.026 Sum_probs=75.8
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--C-CCcEEEEccccccc-cc-cC-CCccEEEeccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--R-PQLKYIKMDVRQMD-EF-QT-GSFDSVVDKGT 122 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~-~~~~~~~~d~~~~~-~~-~~-~~fD~I~~~~~ 122 (237)
.++||++||+|.++..++.++...++++|.++.+++.++++++. . .+++++++|+.+.. .+ .. ..||+|+...+
T Consensus 51 ~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPP 130 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPP 130 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcC
Confidence 38999999999999999999876999999999999999998842 2 36789999996542 12 12 24899998877
Q ss_pred cceeccCCCChHHHHHHHHHHH--HhcCCCcEEEEEEc
Q 026558 123 LDSLLCGSNSRQNATQMLKEVW--RVLKDKGVYILVTY 158 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~--~~L~pgG~l~~~~~ 158 (237)
+.. .....+++.+. .+|+++|++++...
T Consensus 131 y~~--------~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 131 FFN--------GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred CCC--------CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 642 22344444443 46888888877653
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.6e-09 Score=86.51 Aligned_cols=124 Identities=18% Similarity=0.250 Sum_probs=87.4
Q ss_pred cChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--C--CCCcEEEEcccccccc-
Q 026558 34 PSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--N--RPQLKYIKMDVRQMDE- 108 (237)
Q Consensus 34 ~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~--~~~~~~~~~d~~~~~~- 108 (237)
...+.++..... +. +|||+-|=||.++..++..|..+++.+|.|..+++++++++. + ...+++++.|+.+...
T Consensus 112 R~nR~~v~~~~~-gk-rvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~ 189 (286)
T PF10672_consen 112 RENRKWVRKYAK-GK-RVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKR 189 (286)
T ss_dssp HHHHHHHHHHCT-TC-EEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHH
T ss_pred HhhHHHHHHHcC-CC-ceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHH
Confidence 335666766543 44 999999999999999998886699999999999999999984 3 2478899999987431
Q ss_pred c-cCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 109 F-QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 109 ~-~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
. ..++||+|+++.+--.- +...-..+..+++..+.++|+|||.+++.+.+.
T Consensus 190 ~~~~~~fD~IIlDPPsF~k-~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 190 LKKGGRFDLIILDPPSFAK-SKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp HHHTT-EEEEEE--SSEES-STCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred HhcCCCCCEEEECCCCCCC-CHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 1 35689999998663211 111123567789999999999999998777544
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-08 Score=82.65 Aligned_cols=102 Identities=16% Similarity=0.245 Sum_probs=78.8
Q ss_pred cEEEEccCCch----hHHHHHHcC------CCeEEEEeCCHHHHHHHHHHc-------CC--------------C-----
Q 026558 50 RILIVGCGNSA----FSEGMVDDG------YEDVVNVDISSVVIEAMMKKY-------SN--------------R----- 93 (237)
Q Consensus 50 ~iLdlG~G~G~----~~~~~~~~~------~~~~~~vD~s~~~~~~a~~~~-------~~--------------~----- 93 (237)
+|+-.||+||. +++.+.+.+ ..+++|+|||..+++.|+.-. ++ .
T Consensus 99 rIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v 178 (268)
T COG1352 99 RIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRV 178 (268)
T ss_pred EEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEE
Confidence 89999999994 334444443 249999999999999988322 00 0
Q ss_pred -----CCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 94 -----PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 94 -----~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
..|.|.+.|+..-+ ...+.||+|+|.+++-++ +...+.++++..+..|+|||.|++-.
T Consensus 179 ~~~ir~~V~F~~~NLl~~~-~~~~~fD~IfCRNVLIYF-----d~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 179 KEELRKMVRFRRHNLLDDS-PFLGKFDLIFCRNVLIYF-----DEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred ChHHhcccEEeecCCCCCc-cccCCCCEEEEcceEEee-----CHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 13667777776554 256789999999999998 77889999999999999999998854
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2e-08 Score=81.65 Aligned_cols=101 Identities=15% Similarity=0.226 Sum_probs=77.8
Q ss_pred HhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC------CCCCcEEEEccccccccccCCCc
Q 026558 41 KLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS------NRPQLKYIKMDVRQMDEFQTGSF 114 (237)
Q Consensus 41 ~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~------~~~~~~~~~~d~~~~~~~~~~~f 114 (237)
....++.+++||-+|.|.|..+++++++.. +++.+||++++++.+++.+. ..|+++++.. ......++|
T Consensus 66 pl~~h~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~~~~~~~f 140 (262)
T PRK00536 66 GGCTKKELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LLDLDIKKY 140 (262)
T ss_pred HHhhCCCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hhhccCCcC
Confidence 334455656999999999999999999964 99999999999999999663 2356666641 211124789
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
|+|+.+... ...+.+.+.++|+|||+++.+.-
T Consensus 141 DVIIvDs~~------------~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 141 DLIICLQEP------------DIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred CEEEEcCCC------------ChHHHHHHHHhcCCCcEEEECCC
Confidence 999998542 15677889999999999998753
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.2e-09 Score=83.48 Aligned_cols=110 Identities=11% Similarity=0.104 Sum_probs=84.3
Q ss_pred hHHHHHhhCCC-CCCcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccc-c
Q 026558 36 LAPLIKLYVPS-HHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMD-E 108 (237)
Q Consensus 36 ~~~~l~~~~~~-~~~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~-~ 108 (237)
...++..++.. +.++|||||+++|..++++++.. .++++.+|++++..+.|++.+.. ..+++++.+|+.+.. .
T Consensus 67 ~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~ 146 (247)
T PLN02589 67 EGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQ 146 (247)
T ss_pred HHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHH
Confidence 34444444332 22489999999999999998753 34999999999999999999852 358999999997642 2
Q ss_pred cc-----CCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEE
Q 026558 109 FQ-----TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (237)
Q Consensus 109 ~~-----~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 155 (237)
+. .++||+||.+.- ......+++.+.+.|+|||++++
T Consensus 147 l~~~~~~~~~fD~iFiDad----------K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 147 MIEDGKYHGTFDFIFVDAD----------KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred HHhccccCCcccEEEecCC----------HHHhHHHHHHHHHhcCCCeEEEE
Confidence 21 368999998743 35678889999999999999876
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.7e-08 Score=78.99 Aligned_cols=109 Identities=20% Similarity=0.213 Sum_probs=80.9
Q ss_pred cEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEc----cccccccccCCCccEEEecc
Q 026558 50 RILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKM----DVRQMDEFQTGSFDSVVDKG 121 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~----d~~~~~~~~~~~fD~I~~~~ 121 (237)
.|||+|||+|..+..++... .+.++++|.|+.++..|.+|... ...+.++.. |..+......+++|+++++.
T Consensus 151 ~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNP 230 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNP 230 (328)
T ss_pred eEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCC
Confidence 79999999999999887764 56999999999999999999842 235555533 33332224578999999986
Q ss_pred ccc-------------------eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 122 TLD-------------------SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 122 ~l~-------------------~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+.- .+-.+.++......++.-+.|.|+|||.+.+...
T Consensus 231 PYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 231 PYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred CcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 631 1112234556777888999999999999988765
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.7e-09 Score=85.98 Aligned_cols=85 Identities=18% Similarity=0.341 Sum_probs=66.6
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCC
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~ 113 (237)
..++.........+|||||||+|.++..+++.+. +++++|+++.+++.+++++.. .++++++.+|+.+.+ + ..
T Consensus 26 ~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~-~--~~ 101 (294)
T PTZ00338 26 DKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE-F--PY 101 (294)
T ss_pred HHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc-c--cc
Confidence 3344433222334999999999999999998864 899999999999999998752 357999999998765 3 46
Q ss_pred ccEEEeccccce
Q 026558 114 FDSVVDKGTLDS 125 (237)
Q Consensus 114 fD~I~~~~~l~~ 125 (237)
||.|+++.+++.
T Consensus 102 ~d~VvaNlPY~I 113 (294)
T PTZ00338 102 FDVCVANVPYQI 113 (294)
T ss_pred cCEEEecCCccc
Confidence 899999877653
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.6e-09 Score=81.66 Aligned_cols=102 Identities=22% Similarity=0.282 Sum_probs=76.8
Q ss_pred CCcChHHHHHhhCCCCC-CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccccc
Q 026558 32 KYPSLAPLIKLYVPSHH-QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQ 110 (237)
Q Consensus 32 ~~~~~~~~l~~~~~~~~-~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~ 110 (237)
+-..+..+++.+-.... ..|.|+|||.+.++. ...+ .|..+|+-+ .+-+++.+|+.+.| ++
T Consensus 164 P~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~~~-kV~SfDL~a-------------~~~~V~~cDm~~vP-l~ 225 (325)
T KOG3045|consen 164 PENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS---SERH-KVHSFDLVA-------------VNERVIACDMRNVP-LE 225 (325)
T ss_pred CCChHHHHHHHHHhCcCceEEEecccchhhhhh---cccc-ceeeeeeec-------------CCCceeeccccCCc-Cc
Confidence 44445555555433232 489999999988765 2223 889999854 45678999999998 99
Q ss_pred CCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 111 ~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+++.|+++....|.- .+...++.++.|+|++||.+.+....
T Consensus 226 d~svDvaV~CLSLMg--------tn~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 226 DESVDVAVFCLSLMG--------TNLADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred cCcccEEEeeHhhhc--------ccHHHHHHHHHHHhccCceEEEEehh
Confidence 999999998655433 57899999999999999999997743
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.8e-09 Score=82.21 Aligned_cols=105 Identities=22% Similarity=0.297 Sum_probs=85.7
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHc-C-C--CCCcEEEEcccccc-ccccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKY-S-N--RPQLKYIKMDVRQM-DEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~-~-~--~~~~~~~~~d~~~~-~~~~~~~fD~I~~~~~l 123 (237)
.+|||-+.|-|..++..+++|...|+.+|-+|..++.|.-|- + + ...++++.+|+.+. ..|.+++||+|+-+.+=
T Consensus 136 ~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPR 215 (287)
T COG2521 136 ERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPR 215 (287)
T ss_pred CEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeCCCc
Confidence 499999999999999999999779999999999999988764 1 1 23689999999774 34789999999988653
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
-.. .+.-...++-++++|+|+|||.++--+
T Consensus 216 fS~----AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 216 FSL----AGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred cch----hhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 222 234567889999999999999997655
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.4e-08 Score=81.30 Aligned_cols=116 Identities=22% Similarity=0.291 Sum_probs=85.6
Q ss_pred CcChHHHHHhhCCC----C-CCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC----------------
Q 026558 33 YPSLAPLIKLYVPS----H-HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS---------------- 91 (237)
Q Consensus 33 ~~~~~~~l~~~~~~----~-~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~---------------- 91 (237)
+..+...|....++ . +.+||-.|||.|+++..++..|+ .+.|.|.|--|+-..+-.+.
T Consensus 37 ~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~ 115 (270)
T PF07942_consen 37 YSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHS 115 (270)
T ss_pred HHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceec
Confidence 44455556666552 1 13899999999999999999998 99999999988655442110
Q ss_pred --------------------------CCCCcEEEEcccccccccc--CCCccEEEeccccceeccCCCChHHHHHHHHHH
Q 026558 92 --------------------------NRPQLKYIKMDVRQMDEFQ--TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEV 143 (237)
Q Consensus 92 --------------------------~~~~~~~~~~d~~~~~~~~--~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~ 143 (237)
...++....+|+.+....+ .++||+|++...++.. .+..++|+.+
T Consensus 116 ~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA-------~Ni~~Yi~tI 188 (270)
T PF07942_consen 116 FSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA-------ENIIEYIETI 188 (270)
T ss_pred ccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech-------HHHHHHHHHH
Confidence 0113555666666553112 3699999999988877 9999999999
Q ss_pred HHhcCCCcEEEEE
Q 026558 144 WRVLKDKGVYILV 156 (237)
Q Consensus 144 ~~~L~pgG~l~~~ 156 (237)
.++|||||+.+-.
T Consensus 189 ~~lLkpgG~WIN~ 201 (270)
T PF07942_consen 189 EHLLKPGGYWINF 201 (270)
T ss_pred HHHhccCCEEEec
Confidence 9999999987753
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-07 Score=76.73 Aligned_cols=129 Identities=14% Similarity=0.224 Sum_probs=95.6
Q ss_pred cEEEEccCCchhHHHHHHcC---CCeEEEEeCCHHHHHHHHHHcC--CCCCc-EEEEcccccccccc--CCCccEEEecc
Q 026558 50 RILIVGCGNSAFSEGMVDDG---YEDVVNVDISSVVIEAMMKKYS--NRPQL-KYIKMDVRQMDEFQ--TGSFDSVVDKG 121 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~---~~~~~~vD~s~~~~~~a~~~~~--~~~~~-~~~~~d~~~~~~~~--~~~fD~I~~~~ 121 (237)
+||||.||.|.....+.+.. ..++...|+|+..++..++.++ +..++ +|.++|+.+...+. ....++++.++
T Consensus 138 rIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsG 217 (311)
T PF12147_consen 138 RILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSG 217 (311)
T ss_pred EEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEec
Confidence 99999999999988877654 3589999999999999999885 34565 99999998754332 45689999999
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE--cCCchhhhhcc----cCCCCceEEEEEec
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT--YGAPIYRLGML----RDSCSWNIKLHVIE 182 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~--~~~~~~~~~~~----~~~~~w~~~~~~~~ 182 (237)
.++.+ ++.+.....+.-+.+++.|||+++... +++........ +....|....+.-.
T Consensus 218 L~ElF----~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~ 280 (311)
T PF12147_consen 218 LYELF----PDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQA 280 (311)
T ss_pred chhhC----CcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHH
Confidence 88877 333557778999999999999998765 34332222222 23357866655443
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=9e-09 Score=85.43 Aligned_cols=100 Identities=23% Similarity=0.251 Sum_probs=74.4
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--C-CCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--R-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
+.|||+|||+|.++.+.++.|..+++++|.|.-+ +.|++.+.. . .-++++++.+.+.. +|.+++|+|++-..=..
T Consensus 62 K~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~-LP~eKVDiIvSEWMGy~ 139 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIE-LPVEKVDIIVSEWMGYF 139 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEe-cCccceeEEeehhhhHH
Confidence 3899999999999999999997799999987665 888877743 2 24789999998885 77899999999643222
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 154 (237)
++ -..-...+|-.--+.|+|||.++
T Consensus 140 Ll----~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 140 LL----YESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HH----HhhhhhhhhhhhhhccCCCceEc
Confidence 10 01223344444567899999875
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.9e-08 Score=86.56 Aligned_cols=111 Identities=14% Similarity=0.162 Sum_probs=84.8
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||++||.|.-+..+++.. ...+++.|+++.-++.++++++ +..++.+...|...+.....+.||.|+.+.++.
T Consensus 115 ~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCS 194 (470)
T PRK11933 115 QRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPCS 194 (470)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCCC
Confidence 499999999999999998863 3489999999999999999985 445788888888876433346799999876643
Q ss_pred eec--cCC------CCh-------HHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 125 SLL--CGS------NSR-------QNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 125 ~~~--~~~------~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
... ... .+. ..+.++|.++.+.|+|||+++.+|.+
T Consensus 195 G~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 195 GEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 220 000 011 23467999999999999999998865
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-08 Score=83.10 Aligned_cols=112 Identities=21% Similarity=0.329 Sum_probs=83.6
Q ss_pred hCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC------CCCCcEEEEccccccccccCC-Cc
Q 026558 43 YVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS------NRPQLKYIKMDVRQMDEFQTG-SF 114 (237)
Q Consensus 43 ~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~------~~~~~~~~~~d~~~~~~~~~~-~f 114 (237)
...+.+++||-||.|.|..+..+.+.. ..+++++|+++.+++.|++.+. ..++++++..|......-..+ +|
T Consensus 72 ~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~y 151 (246)
T PF01564_consen 72 LLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKY 151 (246)
T ss_dssp HHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-E
T ss_pred hcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcc
Confidence 334444599999999999999999876 4599999999999999998873 246899999999876533344 89
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
|+|+....- .. +.........+++.+.++|+|||++++..
T Consensus 152 DvIi~D~~d-p~--~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 152 DVIIVDLTD-PD--GPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEEESSS-TT--SCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEEeCCC-CC--CCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 999987542 11 11111345789999999999999999876
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.6e-09 Score=80.44 Aligned_cols=104 Identities=21% Similarity=0.285 Sum_probs=73.6
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--C-CCCcEEEEccccccccccCC
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--N-RPQLKYIKMDVRQMDEFQTG 112 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~-~~~~~~~~~d~~~~~~~~~~ 112 (237)
+..+...+.++. .|+|+.||-|.+++.+++.+ ...|+++|++|.+++.+++++. . ...+...++|+.++. +..
T Consensus 92 r~Ri~~~v~~~e-~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~--~~~ 168 (200)
T PF02475_consen 92 RRRIANLVKPGE-VVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL--PEG 168 (200)
T ss_dssp HHHHHTC--TT--EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----TT
T ss_pred HHHHHhcCCcce-EEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc--Ccc
Confidence 444555555555 99999999999999999843 3489999999999999999984 2 236789999999986 378
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEE
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 154 (237)
.+|.|+++.+-. ...+|..+.+++++||++-
T Consensus 169 ~~drvim~lp~~-----------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 169 KFDRVIMNLPES-----------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -EEEEEE--TSS-----------GGGGHHHHHHHEEEEEEEE
T ss_pred ccCEEEECChHH-----------HHHHHHHHHHHhcCCcEEE
Confidence 899999975532 2457888999999998864
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.3e-09 Score=84.63 Aligned_cols=148 Identities=20% Similarity=0.238 Sum_probs=91.4
Q ss_pred CCCCChhhhHHHhccCCCCceeec-CCcChHHHHHhhCCCCC--CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHH
Q 026558 8 QAYGEPWYWDNRYAHESGPFDWYQ-KYPSLAPLIKLYVPSHH--QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIE 84 (237)
Q Consensus 8 ~~~~~~~~w~~~y~~~~~~~~~~~-~~~~~~~~l~~~~~~~~--~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~ 84 (237)
++|++++|.+.+|....+...-.+ ....+..+.+.+...+. .++||||||+-.....-+.....+++..|+++..++
T Consensus 14 ~~FdP~~Yl~~yY~~~~~~~~~~~~~~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~ 93 (256)
T PF01234_consen 14 EEFDPRAYLDTYYSFPSGDDAEDEILLFFLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNRE 93 (256)
T ss_dssp HHB-HHHHHHHHHSTSSS-CHHHHHHHHHHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHH
T ss_pred hcCCHHHHHHHhcCCCccCcccchhHHHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHH
Confidence 467888899999976543321000 00011222222222111 389999999966544444444559999999999998
Q ss_pred HHHHHcCCCC------------------------------Cc-EEEEccccccccccC-----CCccEEEeccccceecc
Q 026558 85 AMMKKYSNRP------------------------------QL-KYIKMDVRQMDEFQT-----GSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 85 ~a~~~~~~~~------------------------------~~-~~~~~d~~~~~~~~~-----~~fD~I~~~~~l~~~~~ 128 (237)
..++.+++.. .+ +++.+|+.+.+.+.. .+||+|++..+++..-
T Consensus 94 el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~- 172 (256)
T PF01234_consen 94 ELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESAC- 172 (256)
T ss_dssp HHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH--
T ss_pred HHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHc-
Confidence 7776553210 13 377888877554432 3599999999987662
Q ss_pred CCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 129 GSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.+.+.....++++.++|||||.|++...
T Consensus 173 --~d~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 173 --KDLDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp --SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred --CCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 2457788999999999999999999764
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.1e-08 Score=77.95 Aligned_cols=102 Identities=16% Similarity=0.261 Sum_probs=65.9
Q ss_pred hHHHHHhhCC-CCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHH-HHHHcCCCCCc-EEEEccccccc--cc-
Q 026558 36 LAPLIKLYVP-SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEA-MMKKYSNRPQL-KYIKMDVRQMD--EF- 109 (237)
Q Consensus 36 ~~~~l~~~~~-~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~-a~~~~~~~~~~-~~~~~d~~~~~--~~- 109 (237)
+..++..... ....+|||+|||+|.++..+++.+..+++++|+++.++.. ++++ +++ .+...|+.... .+
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~----~~v~~~~~~ni~~~~~~~~~ 138 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD----ERVKVLERTNIRYVTPADIF 138 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC----CCeeEeecCCcccCCHhHcC
Confidence 4555555432 2333899999999999999999986699999999988776 3332 232 23334444221 11
Q ss_pred -cCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 110 -QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 110 -~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.-..+|++|.+. ..++..+.++|+| |.+++..
T Consensus 139 ~d~~~~DvsfiS~---------------~~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 139 PDFATFDVSFISL---------------ISILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred CCceeeeEEEeeh---------------HhHHHHHHHHhCc-CeEEEEc
Confidence 112456555432 3368899999999 8776655
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.9e-09 Score=76.18 Aligned_cols=77 Identities=19% Similarity=0.373 Sum_probs=65.9
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC-CCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
++++|||||+|-+++..+-.+...+.|+||+|++++.+..|.... -+++++++|+.++. +..+.||.++.+.++..-
T Consensus 50 kkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle-~~~g~fDtaviNppFGTk 127 (185)
T KOG3420|consen 50 KKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLE-LKGGIFDTAVINPPFGTK 127 (185)
T ss_pred cchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchh-ccCCeEeeEEecCCCCcc
Confidence 489999999999997777666679999999999999999998542 37789999999887 667899999999887653
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.6e-08 Score=87.31 Aligned_cols=99 Identities=22% Similarity=0.313 Sum_probs=71.6
Q ss_pred CcEEEEccCCchhHHHHHHcC-----CCeEEEEeCCHHHHHHHHHHc--C-CCCCcEEEEccccccccccCCCccEEEec
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-----YEDVVNVDISSVVIEAMMKKY--S-NRPQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-----~~~~~~vD~s~~~~~~a~~~~--~-~~~~~~~~~~d~~~~~~~~~~~fD~I~~~ 120 (237)
..|+|+|||+|.+....++.+ ..+|+++|-++.++..++++. . -...++++.+|++++. ...++|+|+|-
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~--lpekvDIIVSE 265 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVE--LPEKVDIIVSE 265 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSC--HSS-EEEEEE-
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCC--CCCceeEEEEe
Confidence 379999999999998877664 349999999999888776653 2 2358999999999986 35699999996
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCCcEEE
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 154 (237)
.++.+ . ..+...++|....|.|+|||+++
T Consensus 266 -lLGsf-g---~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 -LLGSF-G---DNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---BTT-B---TTTSHHHHHHHGGGGEEEEEEEE
T ss_pred -ccCCc-c---ccccCHHHHHHHHhhcCCCCEEe
Confidence 33332 1 11345667899999999999875
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-07 Score=76.75 Aligned_cols=88 Identities=18% Similarity=0.267 Sum_probs=71.7
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCC-Cc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTG-SF 114 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~-~f 114 (237)
+..++...-..++..|||||+|.|.+|..+++.+. .++++|+++.++...++......+++++.+|+.... ++.- .+
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d-~~~l~~~ 96 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFD-FPSLAQP 96 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCc-chhhcCC
Confidence 45555554333334999999999999999999986 899999999999999999876679999999999887 5432 78
Q ss_pred cEEEeccccce
Q 026558 115 DSVVDKGTLDS 125 (237)
Q Consensus 115 D~I~~~~~l~~ 125 (237)
+.|+++.+.+-
T Consensus 97 ~~vVaNlPY~I 107 (259)
T COG0030 97 YKVVANLPYNI 107 (259)
T ss_pred CEEEEcCCCcc
Confidence 99999877643
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.1e-08 Score=82.09 Aligned_cols=97 Identities=15% Similarity=0.239 Sum_probs=70.6
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccc-cc--------------C
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDE-FQ--------------T 111 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~-~~--------------~ 111 (237)
.+|||++||+|.++..+++.. .+++++|+++.+++.|++++. +..+++++.+|+.+... +. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~-~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF-RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 379999999999999888775 499999999999999999984 33488999999976421 11 1
Q ss_pred CCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.+||+|+.+.+-.- ....+++.+.+ |++++++...
T Consensus 287 ~~~D~v~lDPPR~G---------~~~~~l~~l~~---~~~ivyvSC~ 321 (362)
T PRK05031 287 YNFSTIFVDPPRAG---------LDDETLKLVQA---YERILYISCN 321 (362)
T ss_pred CCCCEEEECCCCCC---------CcHHHHHHHHc---cCCEEEEEeC
Confidence 25899999866321 12344444443 5677766654
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.3e-08 Score=81.73 Aligned_cols=96 Identities=15% Similarity=0.203 Sum_probs=69.8
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccc----------c-----CC
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEF----------Q-----TG 112 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~----------~-----~~ 112 (237)
+|||+|||+|.++..+++.. .+++|+|+++.+++.|++++. +..+++++.+|+.++..- . ..
T Consensus 200 ~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSY 278 (353)
T ss_pred cEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccC
Confidence 79999999999999888876 499999999999999999984 334789999999774310 0 12
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.||+|+.+.+=.- ....+++.+.+ |++++++...
T Consensus 279 ~~d~v~lDPPR~G---------~~~~~l~~l~~---~~~ivYvsC~ 312 (353)
T TIGR02143 279 NCSTIFVDPPRAG---------LDPDTCKLVQA---YERILYISCN 312 (353)
T ss_pred CCCEEEECCCCCC---------CcHHHHHHHHc---CCcEEEEEcC
Confidence 3899998765211 12344444433 6777776653
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-07 Score=76.51 Aligned_cols=100 Identities=18% Similarity=0.237 Sum_probs=75.7
Q ss_pred CCCCCcEEEEccCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEcccccccccc---CCCccE
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDEFQ---TGSFDS 116 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~-~-~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~~~---~~~fD~ 116 (237)
.++. +|||-|+|+|.++..+++. + ..+++..|+.++..+.|+++++ +. .++.+.+.|+.+.. +. +..+|.
T Consensus 39 ~pG~-~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g-~~~~~~~~~Da 116 (247)
T PF08704_consen 39 RPGS-RVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG-FDEELESDFDA 116 (247)
T ss_dssp -TT--EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG---STT-TTSEEE
T ss_pred CCCC-EEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccc-ccccccCcccE
Confidence 4454 9999999999999999875 2 3499999999999999999985 23 47899999997533 32 367999
Q ss_pred EEeccccceeccCCCChHHHHHHHHHHHHhc-CCCcEEEEEEc
Q 026558 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVL-KDKGVYILVTY 158 (237)
Q Consensus 117 I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L-~pgG~l~~~~~ 158 (237)
|+.+. .++...+..+.++| ++||++.+...
T Consensus 117 vfLDl------------p~Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 117 VFLDL------------PDPWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp EEEES------------SSGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred EEEeC------------CCHHHHHHHHHHHHhcCCceEEEECC
Confidence 98864 34466889999999 89999888763
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.5e-09 Score=83.56 Aligned_cols=113 Identities=19% Similarity=0.339 Sum_probs=88.8
Q ss_pred CCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccC
Q 026558 32 KYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQT 111 (237)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~ 111 (237)
+++....++..... +. .++|+|||.|..+.. ...+.++|+|++...+.-+++.- ......+|+.++| +..
T Consensus 32 ~Wp~v~qfl~~~~~-gs-v~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~~----~~~~~~ad~l~~p-~~~ 101 (293)
T KOG1331|consen 32 PWPMVRQFLDSQPT-GS-VGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRSG----GDNVCRADALKLP-FRE 101 (293)
T ss_pred ccHHHHHHHhccCC-cc-eeeecccCCcccCcC---CCcceeeecchhhhhccccccCC----CceeehhhhhcCC-CCC
Confidence 44556666665433 44 899999999976532 12347999999998888777652 2268889999999 889
Q ss_pred CCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.+||.+++..++||+ .+......+++++.|+|+|||..++..+
T Consensus 102 ~s~d~~lsiavihhl----sT~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 102 ESFDAALSIAVIHHL----STRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred Cccccchhhhhhhhh----hhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 999999999999999 5667888999999999999998777554
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2e-07 Score=71.61 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=79.6
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccC--CCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQT--GSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~--~~fD~I~~~~~l 123 (237)
.++||+-+|+|.++.+.+++|...++.+|.+..++..+++|.+. ..+++++..|+.....-.. +.||+|+.+.++
T Consensus 45 ~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy 124 (187)
T COG0742 45 ARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPY 124 (187)
T ss_pred CEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCC
Confidence 49999999999999999999988999999999999999999853 2578888888885421122 249999999887
Q ss_pred ceeccCCCChHHHHHHHHH--HHHhcCCCcEEEEEEc
Q 026558 124 DSLLCGSNSRQNATQMLKE--VWRVLKDKGVYILVTY 158 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~--~~~~L~pgG~l~~~~~ 158 (237)
+.- .-+....+.. -...|+|+|.+++...
T Consensus 125 ~~~------l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 125 AKG------LLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred ccc------hhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 621 1222233333 4577999999988764
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-07 Score=81.97 Aligned_cols=97 Identities=18% Similarity=0.171 Sum_probs=76.6
Q ss_pred CcEEEEccCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||++||+|..++.++.. +..+|+++|+++.+++.++++++ +..++.+.+.|+..+. ...+.||+|+.+.. .
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l-~~~~~fD~V~lDP~-G- 135 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALL-HEERKFDVVDIDPF-G- 135 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHH-hhcCCCCEEEECCC-C-
Confidence 38999999999999998765 33489999999999999999984 3346778999997753 11467999998743 2
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
....+++.+.+.+++||++++..
T Consensus 136 ---------s~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 136 ---------SPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred ---------CcHHHHHHHHHHhcCCCEEEEEe
Confidence 22567888888899999998863
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-07 Score=85.13 Aligned_cols=113 Identities=13% Similarity=0.074 Sum_probs=82.5
Q ss_pred CcEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccc-cccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMD-EFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~-~~~~~~fD~I~~~~~l~ 124 (237)
..+||||||.|.++..+++... ..++|+|++...+..+.++.. +..|+.+++.|+..+. .++++++|.|+.+++==
T Consensus 349 p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDP 428 (506)
T PRK01544 349 KVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFPDP 428 (506)
T ss_pred ceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECCCC
Confidence 4899999999999999998863 489999999998888877753 4568888888875433 26778899998864311
Q ss_pred eeccCC-CChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 125 SLLCGS-NSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 125 ~~~~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
|.=-.+ .-+-....+++.+.++|+|||.+.+.|-...
T Consensus 429 WpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~ 466 (506)
T PRK01544 429 WIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIEN 466 (506)
T ss_pred CCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHH
Confidence 100000 0111345689999999999999999885443
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.2e-08 Score=74.84 Aligned_cols=107 Identities=17% Similarity=0.210 Sum_probs=81.1
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHc-C--CCeEEEEeCCHHHHHHHHHHcCC------------CCCcEEEE
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-G--YEDVVNVDISSVVIEAMMKKYSN------------RPQLKYIK 100 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~-~--~~~~~~vD~s~~~~~~a~~~~~~------------~~~~~~~~ 100 (237)
+.+.|...+.++- +.||+|+|+|.++..++.. + .....|||.-++.++.+++++.. .+++.++.
T Consensus 72 ~le~L~~~L~pG~-s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 72 ALEYLDDHLQPGA-SFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HHHHHHHhhccCc-ceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence 4455555566665 9999999999999888753 2 22459999999999999998831 23678889
Q ss_pred ccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 101 MDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 101 ~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+|..... -+..+||.|.+... ...+.+++...|++||.+++-.
T Consensus 151 GDgr~g~-~e~a~YDaIhvGAa-------------a~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 151 GDGRKGY-AEQAPYDAIHVGAA-------------ASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred CCccccC-CccCCcceEEEccC-------------ccccHHHHHHhhccCCeEEEee
Confidence 9998875 45688999988633 2345667888899999998865
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.8e-07 Score=77.45 Aligned_cols=111 Identities=19% Similarity=0.222 Sum_probs=89.7
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--C-CCcEEEEccccccccccCCC
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--R-PQLKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~-~~~~~~~~d~~~~~~~~~~~ 113 (237)
+..+......+. +|||+-+|-|.+++.++..+...|+++|++|.+++.+++++.- . ..+..+++|+.+.. ...+.
T Consensus 179 R~Rva~~v~~GE-~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~-~~~~~ 256 (341)
T COG2520 179 RARVAELVKEGE-TVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVA-PELGV 256 (341)
T ss_pred HHHHHhhhcCCC-EEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhh-hcccc
Confidence 444555556555 9999999999999999999865699999999999999999852 2 24889999999987 33388
Q ss_pred ccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 114 fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+|.|++..+ .....++..+.+.+++||++......+
T Consensus 257 aDrIim~~p-----------~~a~~fl~~A~~~~k~~g~iHyy~~~~ 292 (341)
T COG2520 257 ADRIIMGLP-----------KSAHEFLPLALELLKDGGIIHYYEFVP 292 (341)
T ss_pred CCEEEeCCC-----------CcchhhHHHHHHHhhcCcEEEEEeccc
Confidence 999998754 344668888999999999998876544
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.5e-07 Score=76.06 Aligned_cols=110 Identities=13% Similarity=0.170 Sum_probs=80.4
Q ss_pred hhCCCCCCcEEEEccCCchhHHHHHHcC-----CCeEEEEeCCHHHHHHHHHHcC--CCCCcEE--EEcccccccc-c--
Q 026558 42 LYVPSHHQRILIVGCGNSAFSEGMVDDG-----YEDVVNVDISSVVIEAMMKKYS--NRPQLKY--IKMDVRQMDE-F-- 109 (237)
Q Consensus 42 ~~~~~~~~~iLdlG~G~G~~~~~~~~~~-----~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~--~~~d~~~~~~-~-- 109 (237)
..++++. .|+|+|||+|.-+..+++.. ...++++|+|..+++.+.+++. ..+.+.+ +++|..+... +
T Consensus 72 ~~i~~~~-~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~ 150 (319)
T TIGR03439 72 ASIPSGS-MLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKR 150 (319)
T ss_pred HhcCCCC-EEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccc
Confidence 3445554 89999999998877665432 3489999999999999999987 3466665 7888866421 1
Q ss_pred --cCCCccEEEec-cccceeccCCCChHHHHHHHHHHHH-hcCCCcEEEEEE
Q 026558 110 --QTGSFDSVVDK-GTLDSLLCGSNSRQNATQMLKEVWR-VLKDKGVYILVT 157 (237)
Q Consensus 110 --~~~~fD~I~~~-~~l~~~~~~~~~~~~~~~~l~~~~~-~L~pgG~l~~~~ 157 (237)
......+|+.- .++..+ ++.....+|+++.+ .|+|||.+++-.
T Consensus 151 ~~~~~~~r~~~flGSsiGNf-----~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 151 PENRSRPTTILWLGSSIGNF-----SRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred ccccCCccEEEEeCccccCC-----CHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 12334555554 467666 77888999999999 999999988743
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.1e-07 Score=74.72 Aligned_cols=84 Identities=20% Similarity=0.334 Sum_probs=67.6
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCC---CcEEEEccccccccccCCC
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRP---QLKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~~~~~ 113 (237)
..++..........|||+|.|||.++..+.+.+. +|+++|+++.|+....++.++.+ ..+++.+|+...+ ...
T Consensus 48 ~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d---~P~ 123 (315)
T KOG0820|consen 48 DQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD---LPR 123 (315)
T ss_pred HHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC---Ccc
Confidence 3333333333334999999999999999999986 99999999999999999997644 6889999998775 357
Q ss_pred ccEEEeccccc
Q 026558 114 FDSVVDKGTLD 124 (237)
Q Consensus 114 fD~I~~~~~l~ 124 (237)
||.++++.+.+
T Consensus 124 fd~cVsNlPyq 134 (315)
T KOG0820|consen 124 FDGCVSNLPYQ 134 (315)
T ss_pred cceeeccCCcc
Confidence 99999986654
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.3e-08 Score=80.15 Aligned_cols=78 Identities=15% Similarity=0.186 Sum_probs=56.6
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCC----CcEEEE-cccccccc---ccCCCccEEEe
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRP----QLKYIK-MDVRQMDE---FQTGSFDSVVD 119 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~----~~~~~~-~d~~~~~~---~~~~~fD~I~~ 119 (237)
.+|||||||+|.+...++... ..+++|+|+++.+++.|++++...+ ++.+.. .|..++.. .+.+.||+|+|
T Consensus 116 ~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivc 195 (321)
T PRK11727 116 VRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLC 195 (321)
T ss_pred ceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEe
Confidence 499999999997776665542 3499999999999999999986432 455543 34333221 23568999999
Q ss_pred cccccee
Q 026558 120 KGTLDSL 126 (237)
Q Consensus 120 ~~~l~~~ 126 (237)
+.+++.-
T Consensus 196 NPPf~~s 202 (321)
T PRK11727 196 NPPFHAS 202 (321)
T ss_pred CCCCcCc
Confidence 9987643
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.8e-07 Score=76.03 Aligned_cols=99 Identities=16% Similarity=0.250 Sum_probs=74.5
Q ss_pred CCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccccccCCCccEEEeccccc
Q 026558 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 48 ~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
++.|||+|||+|.++.+.++.|..++++++-| +|.+.|++..++. .++.++.+-+.+.. + .++.|+|++- ++.
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdie-L-PEk~DviISE-PMG 253 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIE-L-PEKVDVIISE-PMG 253 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcccccc-C-chhccEEEec-cch
Confidence 34899999999999999999997799999974 6889999887642 46788888888875 3 5789999986 444
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEE
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 154 (237)
++... +...+..-.+.+.|+|+|.++
T Consensus 254 ~mL~N----ERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 254 YMLVN----ERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred hhhhh----HHHHHHHHHHHhhcCCCCccc
Confidence 44111 233333345669999999875
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.7e-07 Score=80.42 Aligned_cols=96 Identities=9% Similarity=0.178 Sum_probs=78.3
Q ss_pred cEEEEccCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHcCC--CCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 50 RILIVGCGNSAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~--~~~~~~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
+|||+.||+|..++.++.. +..+|+++|+++.+++.+++|++. ..++.+.+.|+..+......+||+|+.+. +.
T Consensus 47 ~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-fG- 124 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-FG- 124 (374)
T ss_pred EEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-CC-
Confidence 7999999999999999987 456999999999999999999852 23678999999876422246799998875 32
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
....+++.+.+.+++||.+.+.
T Consensus 125 ---------s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 125 ---------TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred ---------CcHHHHHHHHHhcccCCEEEEE
Confidence 2246899999999999999886
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.2e-08 Score=86.81 Aligned_cols=98 Identities=21% Similarity=0.302 Sum_probs=71.2
Q ss_pred CcEEEEccCCchhHHHHHHcCCC--eEEEEeCCHHHHHHHHHHcCCCCCcEEEEc--cccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYE--DVVNVDISSVVIEAMMKKYSNRPQLKYIKM--DVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~--~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~--d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
..+||+|||+|+++.++.+++.. ++..-|..+.+++.|.++- +-.+.+ -...+| |+++.||+|.|..++.
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRG-----vpa~~~~~~s~rLP-fp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERG-----VPAMIGVLGSQRLP-FPSNAFDMVHCSRCLI 192 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcC-----cchhhhhhcccccc-CCccchhhhhcccccc
Confidence 38999999999999999999742 2222255667777777773 222222 235677 9999999999998876
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.. . ..-.-+|-++.|+|+|||++++...
T Consensus 193 ~W-----~-~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 193 PW-----H-PNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred cc-----h-hcccceeehhhhhhccCceEEecCC
Confidence 54 1 2224588999999999999988653
|
; GO: 0008168 methyltransferase activity |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-07 Score=73.64 Aligned_cols=105 Identities=18% Similarity=0.263 Sum_probs=66.1
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc------c-cc--CCCccEE
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD------E-FQ--TGSFDSV 117 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~------~-~~--~~~fD~I 117 (237)
.++||+||++|.++..+++++ ...++|+|+.+. ...+++.++++|+.+.. . +. .+.+|+|
T Consensus 25 ~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv 95 (181)
T PF01728_consen 25 FTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLV 95 (181)
T ss_dssp EEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEE
T ss_pred cEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccccceeeeecccchhhHHHhhhhhccccccCccee
Confidence 499999999999999999997 459999999876 11135566666664421 1 12 2689999
Q ss_pred EeccccceeccC-C---CChHHHHHHHHHHHHhcCCCcEEEEEEcCCch
Q 026558 118 VDKGTLDSLLCG-S---NSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (237)
Q Consensus 118 ~~~~~l~~~~~~-~---~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 162 (237)
+++......... . .+.......+.-+...|+|||.+++-.+..+.
T Consensus 96 ~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~ 144 (181)
T PF01728_consen 96 LSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPE 144 (181)
T ss_dssp EE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTT
T ss_pred ccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCcc
Confidence 999843322000 0 11133444566667789999999988876544
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.8e-07 Score=78.69 Aligned_cols=124 Identities=13% Similarity=0.231 Sum_probs=80.6
Q ss_pred cChHHHHHhhCCCCCC-cEEEEccCCchhHHHHHHc--------CCCeEEEEeCCHHHHHHHHHHc--CC--CCCcEEEE
Q 026558 34 PSLAPLIKLYVPSHHQ-RILIVGCGNSAFSEGMVDD--------GYEDVVNVDISSVVIEAMMKKY--SN--RPQLKYIK 100 (237)
Q Consensus 34 ~~~~~~l~~~~~~~~~-~iLdlG~G~G~~~~~~~~~--------~~~~~~~vD~s~~~~~~a~~~~--~~--~~~~~~~~ 100 (237)
..+.+++...+..... +|+|.+||+|.++..+.+. ....++|+|+++.++..|+.++ .+ ..+..+..
T Consensus 32 ~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~ 111 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQ 111 (311)
T ss_dssp HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEE
T ss_pred HHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccc
Confidence 3455666665554443 7999999999999888762 3459999999999999998775 22 12346888
Q ss_pred cccccccccc-CCCccEEEeccccceeccCC--------------CChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 101 MDVRQMDEFQ-TGSFDSVVDKGTLDSLLCGS--------------NSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 101 ~d~~~~~~~~-~~~fD~I~~~~~l~~~~~~~--------------~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+|....+... ...||+|+++.++...-... ........++..+.+.|++||++.++.
T Consensus 112 ~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 112 GDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp S-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 8886655333 57899999998876540000 111222358899999999999987765
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.3e-06 Score=74.71 Aligned_cols=122 Identities=16% Similarity=0.211 Sum_probs=87.8
Q ss_pred HHHhhCCCCC-CcEEEEccCCchhHHHHHHcCC---CeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccc-cC
Q 026558 39 LIKLYVPSHH-QRILIVGCGNSAFSEGMVDDGY---EDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEF-QT 111 (237)
Q Consensus 39 ~l~~~~~~~~-~~iLdlG~G~G~~~~~~~~~~~---~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~-~~ 111 (237)
+....+.+.+ .+|||++++.|.-|..+++... ..|+++|+++.-++..+++++ +..++.....|....+.. ..
T Consensus 147 l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 147 LPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPG 226 (355)
T ss_pred HHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccc
Confidence 3333443333 4999999999999999988752 256999999999999999985 345677888888765422 22
Q ss_pred -CCccEEEeccccceeccC---C-----CC-------hHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 112 -GSFDSVVDKGTLDSLLCG---S-----NS-------RQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 112 -~~fD~I~~~~~l~~~~~~---~-----~~-------~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
++||.|+.+.++.....- + .. ...+.++|..+.+.|||||+++.+|.+-
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 359999998765432100 0 11 1246679999999999999999998644
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.5e-06 Score=67.60 Aligned_cols=109 Identities=14% Similarity=0.185 Sum_probs=86.1
Q ss_pred HhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-CCCCcEEEEcccccc-ccccCCCccEEE
Q 026558 41 KLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQM-DEFQTGSFDSVV 118 (237)
Q Consensus 41 ~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-~~~~~~~~~~d~~~~-~~~~~~~fD~I~ 118 (237)
.....++ ++||++|-|-|.....+.++...+-+.|+..|.+++..++..- ...|+-++.+-..+. +.++++.||-|+
T Consensus 96 ~ai~tkg-grvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~ 174 (271)
T KOG1709|consen 96 EAISTKG-GRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIY 174 (271)
T ss_pred HHHhhCC-ceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeE
Confidence 3333444 4999999999999999998876688999999999999998863 335777777766553 236788899998
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
-.-.-.+. ++...+.+.+.++|||+|++-+.-
T Consensus 175 yDTy~e~y-------Edl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 175 YDTYSELY-------EDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred eechhhHH-------HHHHHHHHHHhhhcCCCceEEEec
Confidence 87544555 899999999999999999886643
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.9e-07 Score=73.82 Aligned_cols=101 Identities=17% Similarity=0.192 Sum_probs=84.4
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~ 128 (237)
...+|+|.|.|..+..+.... .++-+++++...+-.++..+. +.++.+-+|...-. | +-|+|+...++|++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~f-p~ik~infdlp~v~~~a~~~~--~gV~~v~gdmfq~~--P--~~daI~mkWiLhdw-- 249 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKY-PHIKGINFDLPFVLAAAPYLA--PGVEHVAGDMFQDT--P--KGDAIWMKWILHDW-- 249 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhC-CCCceeecCHHHHHhhhhhhc--CCcceecccccccC--C--CcCeEEEEeecccC--
Confidence 389999999999999999954 489999999888888887774 45788888886542 2 34699999999999
Q ss_pred CCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 129 GSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
+.++..++|+++...|+|||.+++....-|
T Consensus 250 ---tDedcvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 250 ---TDEDCVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred ---ChHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 889999999999999999999999876333
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.2e-06 Score=78.60 Aligned_cols=109 Identities=15% Similarity=0.108 Sum_probs=76.7
Q ss_pred CcEEEEccCCchhHHHHHHcC-------------------------------------------CCeEEEEeCCHHHHHH
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-------------------------------------------YEDVVNVDISSVVIEA 85 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-------------------------------------------~~~~~~vD~s~~~~~~ 85 (237)
..++|.+||+|.+.++.+... ...++|+|+++.+++.
T Consensus 192 ~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~ 271 (702)
T PRK11783 192 TPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQA 271 (702)
T ss_pred CeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHH
Confidence 489999999999999876520 1268999999999999
Q ss_pred HHHHcCC--C-CCcEEEEcccccccc-ccCCCccEEEeccccceeccCCCChHHHHHH---HHHHHHhcCCCcEEEEEEc
Q 026558 86 MMKKYSN--R-PQLKYIKMDVRQMDE-FQTGSFDSVVDKGTLDSLLCGSNSRQNATQM---LKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 86 a~~~~~~--~-~~~~~~~~d~~~~~~-~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~---l~~~~~~L~pgG~l~~~~~ 158 (237)
|++|+.. . ..+.+.++|+.+++. ...++||+|+++.++..-... ..+...+ +.+..+...+|+.+++.+.
T Consensus 272 A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~---~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 272 ARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGE---EPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCc---hHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 9999853 2 357899999988752 223579999999887543211 1233333 3334444458999888875
Q ss_pred CC
Q 026558 159 GA 160 (237)
Q Consensus 159 ~~ 160 (237)
..
T Consensus 349 ~~ 350 (702)
T PRK11783 349 SP 350 (702)
T ss_pred CH
Confidence 43
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.3e-07 Score=70.04 Aligned_cols=97 Identities=16% Similarity=0.166 Sum_probs=62.3
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEcccccccc-ccCCC-ccEEEeccccc
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDE-FQTGS-FDSVVDKGTLD 124 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~-~~~~~-fD~I~~~~~l~ 124 (237)
.|+|+.||.|..++.+++.+. +|+++|+++..++.|+.+++- ..++.++++|+.+... +.... +|+|+.+.+..
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPWG 80 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPWG 80 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---BS
T ss_pred EEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCCC
Confidence 699999999999999999975 999999999999999999852 3489999999988642 22222 89999986643
Q ss_pred ee-------ccC--CCChHHHHHHHHHHHHhc
Q 026558 125 SL-------LCG--SNSRQNATQMLKEVWRVL 147 (237)
Q Consensus 125 ~~-------~~~--~~~~~~~~~~l~~~~~~L 147 (237)
-. +.. .-.+-...++++.+.++.
T Consensus 81 Gp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t 112 (163)
T PF09445_consen 81 GPSYSKKDVFDLEKSMQPFNLEDLLKAARKIT 112 (163)
T ss_dssp SGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-
T ss_pred CccccccCccCHHHccCCCCHHHHHHHHHhhC
Confidence 11 100 112235566676666554
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.5e-06 Score=72.33 Aligned_cols=109 Identities=13% Similarity=0.118 Sum_probs=81.3
Q ss_pred CcEEEEccCCchhHHHHHHcCC---------------------------------C-------eEEEEeCCHHHHHHHHH
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY---------------------------------E-------DVVNVDISSVVIEAMMK 88 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~---------------------------------~-------~~~~vD~s~~~~~~a~~ 88 (237)
..++|.-||+|.++++.+-.+. + .++|+|+++.+++.|+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~ 272 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA 272 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence 4899999999999998876541 0 27799999999999999
Q ss_pred HcCCC---CCcEEEEccccccccccCCCccEEEeccccceeccCCCChH-HHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 89 KYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQ-NATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 89 ~~~~~---~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~-~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
|.... .-+.|.+.|+..+. -+-+.+|+|+|+.+..--+....... ....+.+.+.+.++--+.+++.+.
T Consensus 273 NA~~AGv~d~I~f~~~d~~~l~-~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 273 NARAAGVGDLIEFKQADATDLK-EPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHhcCCCceEEEEEcchhhCC-CCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 98532 36899999999987 22278999999988754332222222 445666677788887778877763
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.4e-06 Score=76.12 Aligned_cols=99 Identities=20% Similarity=0.215 Sum_probs=74.6
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccc--cCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEF--QTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~--~~~~fD~I~~~~~l~ 124 (237)
.++||+-||.|.++..++++.. +|+|+|+++++++.|+++++ +..|+.|..+++.+...- ....+|.|+.+.+=
T Consensus 295 ~~vlDlYCGvG~f~l~lA~~~~-~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR- 372 (432)
T COG2265 295 ERVLDLYCGVGTFGLPLAKRVK-KVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPR- 372 (432)
T ss_pred CEEEEeccCCChhhhhhcccCC-EEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCCC-
Confidence 4899999999999999997754 99999999999999999985 345799999999887522 23578999987542
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.-...-+-+....++|..+++++..
T Consensus 373 ---------~G~~~~~lk~l~~~~p~~IvYVSCN 397 (432)
T COG2265 373 ---------AGADREVLKQLAKLKPKRIVYVSCN 397 (432)
T ss_pred ---------CCCCHHHHHHHHhcCCCcEEEEeCC
Confidence 2223223333445667777777664
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.7e-06 Score=69.84 Aligned_cols=85 Identities=18% Similarity=0.307 Sum_probs=66.9
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccC---CC
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQT---GS 113 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~---~~ 113 (237)
.+++...-......|||+|+|+|.++..+++.+ .+++++|+++..++..++++...++++++.+|+.++. ... ..
T Consensus 20 ~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~-~~~~~~~~ 97 (262)
T PF00398_consen 20 DKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWD-LYDLLKNQ 97 (262)
T ss_dssp HHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSC-GGGHCSSS
T ss_pred HHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhcccceeeecchhccc-cHHhhcCC
Confidence 444444433333499999999999999999998 5999999999999999999886689999999999876 322 45
Q ss_pred ccEEEecccc
Q 026558 114 FDSVVDKGTL 123 (237)
Q Consensus 114 fD~I~~~~~l 123 (237)
...|+++.+.
T Consensus 98 ~~~vv~NlPy 107 (262)
T PF00398_consen 98 PLLVVGNLPY 107 (262)
T ss_dssp EEEEEEEETG
T ss_pred ceEEEEEecc
Confidence 6677777655
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.1e-06 Score=66.98 Aligned_cols=100 Identities=18% Similarity=0.228 Sum_probs=73.1
Q ss_pred CcEEEEccCCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc-------ccCCCccEEEe
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE-------FQTGSFDSVVD 119 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~--~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~-------~~~~~fD~I~~ 119 (237)
.+|+|||+-.|+++..+++... ..|+++|+.| ....+++.++++|++.-.. +....+|+|+|
T Consensus 47 ~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p---------~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~s 117 (205)
T COG0293 47 MVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP---------MKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLS 117 (205)
T ss_pred CEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc---------cccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEe
Confidence 3999999999999999988753 2599999977 3333679999999976431 34455799999
Q ss_pred cccc--------ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 120 KGTL--------DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 120 ~~~l--------~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
++.- +|. .........++-+..+|+|||.+++-.+...
T Consensus 118 D~ap~~~g~~~~Dh~----r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~ 163 (205)
T COG0293 118 DMAPNTSGNRSVDHA----RSMYLCELALEFALEVLKPGGSFVAKVFQGE 163 (205)
T ss_pred cCCCCcCCCccccHH----HHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence 8664 222 1222334567777889999999999776443
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.40 E-value=2e-06 Score=77.56 Aligned_cols=76 Identities=14% Similarity=0.240 Sum_probs=54.5
Q ss_pred cEEEEccCCchhHHHHHHcC---------CCeEEEEeCCHHHHHHHHHHcCCCC--CcEEEEccccccc----cccCCCc
Q 026558 50 RILIVGCGNSAFSEGMVDDG---------YEDVVNVDISSVVIEAMMKKYSNRP--QLKYIKMDVRQMD----EFQTGSF 114 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~---------~~~~~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~----~~~~~~f 114 (237)
+|||.|||+|.++..+++.. ...++|+|+++.++..++.++.... ...+...|..... .-..+.|
T Consensus 34 ~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~~f 113 (524)
T TIGR02987 34 KIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLDLF 113 (524)
T ss_pred EEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccCcc
Confidence 89999999999999887642 1378999999999999998874322 3445545433211 0113579
Q ss_pred cEEEeccccce
Q 026558 115 DSVVDKGTLDS 125 (237)
Q Consensus 115 D~I~~~~~l~~ 125 (237)
|+|+.+.+..-
T Consensus 114 D~IIgNPPy~~ 124 (524)
T TIGR02987 114 DIVITNPPYGR 124 (524)
T ss_pred cEEEeCCCccc
Confidence 99999988654
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.3e-07 Score=75.97 Aligned_cols=106 Identities=20% Similarity=0.233 Sum_probs=89.1
Q ss_pred hCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEe
Q 026558 43 YVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVD 119 (237)
Q Consensus 43 ~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~ 119 (237)
.+.+.. .++|+|||-|....++.....+.++|+|+++..+..+...... .....++.+|+.+.+ +++..||.+-+
T Consensus 107 ~~~~~~-~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~-fedn~fd~v~~ 184 (364)
T KOG1269|consen 107 SCFPGS-KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP-FEDNTFDGVRF 184 (364)
T ss_pred cCcccc-cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC-CCccccCcEEE
Confidence 334444 8999999999999999988777999999999888887766532 124456888999998 99999999999
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.....|. .+...++++++|+++|||+++...
T Consensus 185 ld~~~~~-------~~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 185 LEVVCHA-------PDLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred EeecccC-------CcHHHHHHHHhcccCCCceEEeHH
Confidence 9888888 889999999999999999998854
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.7e-06 Score=73.94 Aligned_cols=83 Identities=17% Similarity=0.284 Sum_probs=56.2
Q ss_pred HHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccc---------
Q 026558 40 IKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDE--------- 108 (237)
Q Consensus 40 l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~--------- 108 (237)
+...+...+..|||+-||.|.++..+++... +|+|+|+++.+++.|++++. +..|++|+.+++.++..
T Consensus 189 ~~~~l~~~~~~vlDlycG~G~fsl~la~~~~-~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~ 267 (352)
T PF05958_consen 189 ALEWLDLSKGDVLDLYCGVGTFSLPLAKKAK-KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFN 267 (352)
T ss_dssp HHHHCTT-TTEEEEES-TTTCCHHHHHCCSS-EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGT
T ss_pred HHHHhhcCCCcEEEEeecCCHHHHHHHhhCC-eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHH
Confidence 3334444333899999999999999999875 99999999999999999984 45689999887754321
Q ss_pred ------ccCCCccEEEecccc
Q 026558 109 ------FQTGSFDSVVDKGTL 123 (237)
Q Consensus 109 ------~~~~~fD~I~~~~~l 123 (237)
.....+|+|+.+.+=
T Consensus 268 ~~~~~~~~~~~~d~vilDPPR 288 (352)
T PF05958_consen 268 RLKGIDLKSFKFDAVILDPPR 288 (352)
T ss_dssp TGGGS-GGCTTESEEEE---T
T ss_pred hhhhhhhhhcCCCEEEEcCCC
Confidence 112368999887553
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.1e-06 Score=65.02 Aligned_cols=120 Identities=13% Similarity=0.090 Sum_probs=83.4
Q ss_pred EEEEccCCchhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 51 ILIVGCGNSAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 51 iLdlG~G~G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
|.|+||.-|.+++++++.+.+ +++++|+++..++.|+++... ...+++..+|-.+.. -+.+..|.|+..++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l-~~~e~~d~ivIAGM---- 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVL-KPGEDVDTIVIAGM---- 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccccc-CCCCCCCEEEEecC----
Confidence 689999999999999999844 899999999999999999852 247899999976643 12334788877654
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchhhhhcccCCCCceEEEEEe
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVI 181 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 181 (237)
+-....++|++....++....|+++.......-..++ ...+|.+....+
T Consensus 76 -----GG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L-~~~gf~I~~E~l 124 (205)
T PF04816_consen 76 -----GGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWL-YENGFEIIDEDL 124 (205)
T ss_dssp ------HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHH-HHTTEEEEEEEE
T ss_pred -----CHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHH-HHCCCEEEEeEE
Confidence 4466788999998888877788888766655444444 245676655544
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.5e-06 Score=60.97 Aligned_cols=100 Identities=26% Similarity=0.390 Sum_probs=71.6
Q ss_pred EEEEccCCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHcCCCCC--cEEEEccccc--cccccC-CCccEEEecccc
Q 026558 51 ILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNRPQ--LKYIKMDVRQ--MDEFQT-GSFDSVVDKGTL 123 (237)
Q Consensus 51 iLdlG~G~G~~~~~~~~~~~--~~~~~vD~s~~~~~~a~~~~~~~~~--~~~~~~d~~~--~~~~~~-~~fD~I~~~~~l 123 (237)
++|+|||+|... .+..... ..++++|+++.++..++........ +.+...|... .+ +.. ..||++.+....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLP-FEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCC-CCCCCceeEEeeeeeh
Confidence 999999999976 3333322 3789999999999986655432111 5788888776 44 555 489999444444
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
++. . ....+.++.+.++|+|.+++.....
T Consensus 130 ~~~-------~-~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 130 HLL-------P-PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred hcC-------C-HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 443 2 7889999999999999998877544
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.5e-06 Score=67.20 Aligned_cols=113 Identities=14% Similarity=0.064 Sum_probs=67.8
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcC-----------CCCCcEEEEccc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYS-----------NRPQLKYIKMDV 103 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~-----------~~~~~~~~~~d~ 103 (237)
+..+++..-..+....+|||||.|.....++-. +..+.+|||+.+...+.|+.... ....+.+..+|+
T Consensus 31 ~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 31 VSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 566666544333349999999999998776644 44469999999998887765331 123677888888
Q ss_pred ccccc--ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 104 RQMDE--FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 104 ~~~~~--~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
.+.+. ..-...|+|++++.+-. +.....|.+....||+|.+++..
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~F~--------~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTCFD--------PDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TTT---------HHHHHHHHHHHTTS-TT-EEEES
T ss_pred cccHhHhhhhcCCCEEEEeccccC--------HHHHHHHHHHHhcCCCCCEEEEC
Confidence 76541 11245799999876421 45566678888899999887653
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.2e-06 Score=68.56 Aligned_cols=105 Identities=19% Similarity=0.240 Sum_probs=73.0
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCCCCcEE---EEccccccccccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQLKY---IKMDVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~~~~~~---~~~d~~~~~~~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|..+-.+.+.. ..+++++|.|+.+++.++.-....++... ......+.. +-...|+|+++++|
T Consensus 35 ~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~DLvi~s~~L 112 (274)
T PF09243_consen 35 RSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFL--PFPPDDLVIASYVL 112 (274)
T ss_pred ceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccc--cCCCCcEEEEehhh
Confidence 499999999998776665542 34899999999999999987754332211 111111111 12234999999999
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCch
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 162 (237)
.-+ .+ .....+++.+.+.+.+ .++++..+.|.
T Consensus 113 ~EL----~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 113 NEL----PS-AARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred hcC----Cc-hHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 888 34 7778889999888876 88887766553
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.4e-06 Score=65.34 Aligned_cols=99 Identities=14% Similarity=0.109 Sum_probs=74.4
Q ss_pred cEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 50 RILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
+++|+|+|.|-=++.++-.. ..+++.+|.+..-+...+.-.. +..|+++++..+.+ . ....+||+|++..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~-~~~~~fd~v~aRAv---- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-P-EYRESFDVVTARAV---- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-T-TTTT-EEEEEEESS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-c-ccCCCccEEEeehh----
Confidence 79999999997666665443 2389999999888777776653 44689999999988 2 45789999999865
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
.....+++-+...+++||.+++.-....
T Consensus 125 -------~~l~~l~~~~~~~l~~~G~~l~~KG~~~ 152 (184)
T PF02527_consen 125 -------APLDKLLELARPLLKPGGRLLAYKGPDA 152 (184)
T ss_dssp -------SSHHHHHHHHGGGEEEEEEEEEEESS--
T ss_pred -------cCHHHHHHHHHHhcCCCCEEEEEcCCCh
Confidence 3456788889999999999988875443
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.7e-06 Score=64.66 Aligned_cols=119 Identities=18% Similarity=0.242 Sum_probs=81.0
Q ss_pred eecCCcChHHHHHhhC-----CCCCCcEEEEccCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc
Q 026558 29 WYQKYPSLAPLIKLYV-----PSHHQRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM 101 (237)
Q Consensus 29 ~~~~~~~~~~~l~~~~-----~~~~~~iLdlG~G~G~~~~~~~~~-~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~ 101 (237)
|......+...+..-+ .++. +||-||+.+|.....++.- + ...|+++|+|+...+.+-.-.+..+|+-.+..
T Consensus 51 W~P~RSKLaAai~~Gl~~~~ik~gs-kVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~ 129 (229)
T PF01269_consen 51 WNPFRSKLAAAILKGLENIPIKPGS-KVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILE 129 (229)
T ss_dssp E-TTT-HHHHHHHTT-S--S--TT--EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES
T ss_pred cCchhhHHHHHHHcCccccCCCCCC-EEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeec
Confidence 4333444666664432 2333 9999999999988888764 2 34899999999665555444433479999999
Q ss_pred ccccccccc--CCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 102 DVRQMDEFQ--TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 102 d~~~~~~~~--~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
|+.....+. -+.+|+|+++- ..+.+..-++.++...||+||.+++..
T Consensus 130 DAr~P~~Y~~lv~~VDvI~~DV---------aQp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 130 DARHPEKYRMLVEMVDVIFQDV---------AQPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp -TTSGGGGTTTS--EEEEEEE----------SSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCChHHhhcccccccEEEecC---------CChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 998765322 35889998752 244778888999999999999998865
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.5e-06 Score=69.08 Aligned_cols=118 Identities=21% Similarity=0.301 Sum_probs=80.3
Q ss_pred cCCcChHHHHHhhCCCCC-----CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHc---C-----------
Q 026558 31 QKYPSLAPLIKLYVPSHH-----QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKY---S----------- 91 (237)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~-----~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~---~----------- 91 (237)
.-+..+...|..+.++.. -+||-.|||.|+++..++..|+ .+-|=|+|--|+=-..-.+ +
T Consensus 129 ~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfI 207 (369)
T KOG2798|consen 129 QLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFI 207 (369)
T ss_pred hhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeee
Confidence 345566777777776522 2899999999999999999886 6666677666543322100 0
Q ss_pred ----------------------------CCCCcEEEEcccccccc--ccCCCccEEEeccccceeccCCCChHHHHHHHH
Q 026558 92 ----------------------------NRPQLKYIKMDVRQMDE--FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLK 141 (237)
Q Consensus 92 ----------------------------~~~~~~~~~~d~~~~~~--~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~ 141 (237)
...+.....+|+.+.-. -..+.||+|+....++.. .+..++|+
T Consensus 208 h~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa-------~NileYi~ 280 (369)
T KOG2798|consen 208 HQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA-------HNILEYID 280 (369)
T ss_pred eccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech-------HHHHHHHH
Confidence 00112223455544321 113469999999888877 99999999
Q ss_pred HHHHhcCCCcEEEEE
Q 026558 142 EVWRVLKDKGVYILV 156 (237)
Q Consensus 142 ~~~~~L~pgG~l~~~ 156 (237)
.+..+|+|||+++-+
T Consensus 281 tI~~iLk~GGvWiNl 295 (369)
T KOG2798|consen 281 TIYKILKPGGVWINL 295 (369)
T ss_pred HHHHhccCCcEEEec
Confidence 999999999998764
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.3e-07 Score=72.99 Aligned_cols=93 Identities=18% Similarity=0.223 Sum_probs=72.6
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~ 128 (237)
.++||+|+|.|.++..++... .+|++++.|..|+...+++- ..++ ...++. -.+-++|+|.|-..++--
T Consensus 114 ~~lLDlGAGdGeit~~m~p~f-eevyATElS~tMr~rL~kk~-----ynVl--~~~ew~-~t~~k~dli~clNlLDRc-- 182 (288)
T KOG3987|consen 114 VTLLDLGAGDGEITLRMAPTF-EEVYATELSWTMRDRLKKKN-----YNVL--TEIEWL-QTDVKLDLILCLNLLDRC-- 182 (288)
T ss_pred eeEEeccCCCcchhhhhcchH-HHHHHHHhhHHHHHHHhhcC-----Ccee--eehhhh-hcCceeehHHHHHHHHhh--
Confidence 489999999999999888774 48999999999999988772 2222 222332 234579999998888766
Q ss_pred CCCChHHHHHHHHHHHHhcCC-CcEEEEEE
Q 026558 129 GSNSRQNATQMLKEVWRVLKD-KGVYILVT 157 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~p-gG~l~~~~ 157 (237)
.+...+|+.+..+|+| +|++++.-
T Consensus 183 -----~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 183 -----FDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred -----cChHHHHHHHHHHhccCCCcEEEEE
Confidence 6778899999999999 78877643
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.8e-06 Score=64.75 Aligned_cols=98 Identities=17% Similarity=0.229 Sum_probs=77.8
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHc--CCCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKY--SNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~--~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
..+.|+|+|+|.++...++.. .+|++++.+|...+.|.+++ .+..|++++.+|+.+.. | +..|+|+|-. ++..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A-~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~-f--e~ADvvicEm-lDTa 108 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA-ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD-F--ENADVVICEM-LDTA 108 (252)
T ss_pred hceeeccCCcchHHHHHHhhh-ceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc-c--cccceeHHHH-hhHH
Confidence 389999999999998888874 49999999999999999996 45678999999999987 6 5689999863 3322
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEE
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 155 (237)
+ =.+.+..+++.+...|+.++.++=
T Consensus 109 L----i~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 109 L----IEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred h----hcccccHHHHHHHHHhhcCCcccc
Confidence 1 113445677888889998888764
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.2e-05 Score=63.24 Aligned_cols=112 Identities=15% Similarity=0.219 Sum_probs=82.9
Q ss_pred cChHHHHHhhCC--CCCCcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEcccccc
Q 026558 34 PSLAPLIKLYVP--SHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQM 106 (237)
Q Consensus 34 ~~~~~~l~~~~~--~~~~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~ 106 (237)
+...+++..++. ++ ++.||||.=||..+..++..- ..+++++|+++...+.+.+..+. ...++++++++.+.
T Consensus 59 ~d~g~fl~~li~~~~a-k~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~es 137 (237)
T KOG1663|consen 59 PDKGQFLQMLIRLLNA-KRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALES 137 (237)
T ss_pred hHHHHHHHHHHHHhCC-ceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhh
Confidence 334444444432 23 389999999999888887653 34999999999999999776642 35789999988653
Q ss_pred c-----cccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 107 D-----EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 107 ~-----~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
. ....+.||.+|.+.- ......+.+++.+++|+||++++-
T Consensus 138 Ld~l~~~~~~~tfDfaFvDad----------K~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 138 LDELLADGESGTFDFAFVDAD----------KDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred HHHHHhcCCCCceeEEEEccc----------hHHHHHHHHHHHhhcccccEEEEe
Confidence 2 234678999987642 245568999999999999999874
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.6e-06 Score=65.87 Aligned_cols=89 Identities=22% Similarity=0.340 Sum_probs=69.1
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc--cccCCCccEEEeccccceec
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD--EFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~--~~~~~~fD~I~~~~~l~~~~ 127 (237)
++||+||=+...... ..+.-.|+.||+++ ..-.+.+.|+.+.| ..+.++||+|.++.+|.++
T Consensus 54 rlLEVGals~~N~~s--~~~~fdvt~IDLns-------------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfV- 117 (219)
T PF11968_consen 54 RLLEVGALSTDNACS--TSGWFDVTRIDLNS-------------QHPGILQQDFMERPLPKNESEKFDVISLSLVLNFV- 117 (219)
T ss_pred eEEeecccCCCCccc--ccCceeeEEeecCC-------------CCCCceeeccccCCCCCCcccceeEEEEEEEEeeC-
Confidence 899999965443322 22323799999977 23356778888765 2347899999999999999
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcE-----EEEEE
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGV-----YILVT 157 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~-----l~~~~ 157 (237)
+++....+.+..+.+.|+|+|. ++++.
T Consensus 118 ---P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVl 149 (219)
T PF11968_consen 118 ---PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVL 149 (219)
T ss_pred ---CCHHHHHHHHHHHHHHhCCCCccCcceEEEEe
Confidence 6789999999999999999999 77765
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.9e-05 Score=62.40 Aligned_cols=96 Identities=14% Similarity=0.144 Sum_probs=72.8
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCC-ccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGS-FDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~-fD~I~~~~~l~ 124 (237)
.+++|||+|.|-=++.++-.. ..+++.+|....-+...++-.. +.+|++++++.+.++. .... ||+|++..+
T Consensus 69 ~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~--~~~~~~D~vtsRAv-- 144 (215)
T COG0357 69 KRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFG--QEKKQYDVVTSRAV-- 144 (215)
T ss_pred CEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcc--cccccCcEEEeehc--
Confidence 499999999997666655222 2379999999888777776653 4568999999999886 2223 999999854
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.....+++-+...+++||.+++.-
T Consensus 145 ---------a~L~~l~e~~~pllk~~g~~~~~k 168 (215)
T COG0357 145 ---------ASLNVLLELCLPLLKVGGGFLAYK 168 (215)
T ss_pred ---------cchHHHHHHHHHhcccCCcchhhh
Confidence 445667777899999999876544
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.22 E-value=8e-06 Score=67.77 Aligned_cols=114 Identities=18% Similarity=0.227 Sum_probs=84.4
Q ss_pred CCCCCcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccc-ccCCCccEEEe
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDE-FQTGSFDSVVD 119 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~-~~~~~fD~I~~ 119 (237)
+.++..|||++++.|.-+..+++.. ...+++.|+++.-+...+++.+ +..++.....|...... .....||.|+.
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 3333499999999999999988864 3599999999999999998874 44577777788877632 33456999999
Q ss_pred ccccceecc-C-CCC-------------hHHHHHHHHHHHHhc----CCCcEEEEEEc
Q 026558 120 KGTLDSLLC-G-SNS-------------RQNATQMLKEVWRVL----KDKGVYILVTY 158 (237)
Q Consensus 120 ~~~l~~~~~-~-~~~-------------~~~~~~~l~~~~~~L----~pgG~l~~~~~ 158 (237)
+.+...... . .+. ...+.++|+++.+.+ +|||+++..|.
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 866543310 0 000 124567999999999 99999999985
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.7e-05 Score=63.37 Aligned_cols=85 Identities=11% Similarity=0.112 Sum_probs=65.3
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCC-CCcEEEEcccccccc----c
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDE----F 109 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~----~ 109 (237)
+.+.+..+...+++.++|.-+|.|..+..+++.. ..+++|+|.++.+++.+++++... .++.++++++.++.. .
T Consensus 9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~ 88 (305)
T TIGR00006 9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDEL 88 (305)
T ss_pred HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhc
Confidence 3455655544444599999999999999999863 369999999999999999988543 478899999887642 2
Q ss_pred cCCCccEEEec
Q 026558 110 QTGSFDSVVDK 120 (237)
Q Consensus 110 ~~~~fD~I~~~ 120 (237)
...++|.|+.+
T Consensus 89 ~~~~vDgIl~D 99 (305)
T TIGR00006 89 LVTKIDGILVD 99 (305)
T ss_pred CCCcccEEEEe
Confidence 23568888885
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.8e-06 Score=62.48 Aligned_cols=101 Identities=17% Similarity=0.255 Sum_probs=74.9
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
++|||+|+|+|..++..+..|...++..|+.|...+..+-|.+. ..++.+...|... . ...||+|+....+..-
T Consensus 81 krVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~---~~~~Dl~LagDlfy~~- 155 (218)
T COG3897 81 KRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-S---PPAFDLLLAGDLFYNH- 155 (218)
T ss_pred ceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-C---CcceeEEEeeceecCc-
Confidence 49999999999999999999977999999999888888877753 2367777777665 2 5789999998765433
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcE-EEEEEcCCc
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGV-YILVTYGAP 161 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~-l~~~~~~~~ 161 (237)
.....++. ..+.|+..|. +++-+.+++
T Consensus 156 ------~~a~~l~~-~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 156 ------TEADRLIP-WKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred ------hHHHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence 55666777 6666655554 444444443
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.8e-05 Score=58.78 Aligned_cols=120 Identities=16% Similarity=0.231 Sum_probs=87.4
Q ss_pred eecCCcChHHHHHhhCC----CCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccc
Q 026558 29 WYQKYPSLAPLIKLYVP----SHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDV 103 (237)
Q Consensus 29 ~~~~~~~~~~~l~~~~~----~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~ 103 (237)
|......+...+-.-+. .++.+||-||+.+|.....++.-. ...++++++|+...+..-..+...+|+-.+..|+
T Consensus 54 Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA 133 (231)
T COG1889 54 WNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDA 133 (231)
T ss_pred eCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeeccc
Confidence 54444445555544322 222399999999999988887753 3489999999998887777766668999999999
Q ss_pred cccccc--cCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 104 RQMDEF--QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 104 ~~~~~~--~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.....+ --+..|+|+.+- ..+.+..-+..++...|++||.+++..
T Consensus 134 ~~P~~Y~~~Ve~VDviy~DV---------AQp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 134 RKPEKYRHLVEKVDVIYQDV---------AQPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred CCcHHhhhhcccccEEEEec---------CCchHHHHHHHHHHHhcccCCeEEEEE
Confidence 876432 235688887642 355777888999999999999777643
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.9e-05 Score=64.18 Aligned_cols=120 Identities=13% Similarity=0.173 Sum_probs=76.5
Q ss_pred HHHHHhhCCC-CCCcEEEEccCCc--hhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCCCC--cEEEEcccccccc-
Q 026558 37 APLIKLYVPS-HHQRILIVGCGNS--AFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQ--LKYIKMDVRQMDE- 108 (237)
Q Consensus 37 ~~~l~~~~~~-~~~~iLdlG~G~G--~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~~~--~~~~~~d~~~~~~- 108 (237)
.+.++.+... +-...||||||-- .....+++.- .++|+.+|++|..+..++..+.+.++ ..++++|+.+...
T Consensus 57 ~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~i 136 (267)
T PF04672_consen 57 RRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAI 136 (267)
T ss_dssp HHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHH
T ss_pred HHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHH
Confidence 3344444454 4358999999963 3556666542 45999999999999999999877666 8899999987432
Q ss_pred ---------ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 109 ---------FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 109 ---------~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+.-.+.=.++...++|++ .+.++...++..+.+.|.||++|++.....
T Consensus 137 L~~p~~~~~lD~~rPVavll~~vLh~v----~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 137 LAHPEVRGLLDFDRPVAVLLVAVLHFV----PDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp HCSHHHHCC--TTS--EEEECT-GGGS-----CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred hcCHHHHhcCCCCCCeeeeeeeeeccC----CCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 112334467777899998 455788999999999999999999976544
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.2e-05 Score=64.85 Aligned_cols=84 Identities=14% Similarity=0.158 Sum_probs=63.1
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~ 128 (237)
.++|||||++|.++..++++|. .|++||..+ +- ..+...+++.....|..... .+.+.+|.++|+.+
T Consensus 213 ~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~----~~L~~~~~V~h~~~d~fr~~-p~~~~vDwvVcDmv------ 279 (357)
T PRK11760 213 MRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MA----QSLMDTGQVEHLRADGFKFR-PPRKNVDWLVCDMV------ 279 (357)
T ss_pred CEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cC----HhhhCCCCEEEEeccCcccC-CCCCCCCEEEEecc------
Confidence 4999999999999999999987 999999654 21 22333478888888887664 12678999999865
Q ss_pred CCCChHHHHHHHHHHHHhcCCC
Q 026558 129 GSNSRQNATQMLKEVWRVLKDK 150 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pg 150 (237)
..+..+.+-+.+.|..|
T Consensus 280 -----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 -----EKPARVAELMAQWLVNG 296 (357)
T ss_pred -----cCHHHHHHHHHHHHhcC
Confidence 34456666677777666
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.1e-06 Score=63.48 Aligned_cols=74 Identities=18% Similarity=0.178 Sum_probs=60.1
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--C-CCcEEEEccccccc---cccCCCccEEEecccc
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--R-PQLKYIKMDVRQMD---EFQTGSFDSVVDKGTL 123 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~-~~~~~~~~d~~~~~---~~~~~~fD~I~~~~~l 123 (237)
.|+|.-||.|..++.++.++. .|+++|++|.-+.-|+.+++- . .++.|+++|+.+.. .+....+|+|+.+.+.
T Consensus 97 ~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sppw 175 (263)
T KOG2730|consen 97 VIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSPPW 175 (263)
T ss_pred hhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCCCC
Confidence 899999999999999998875 899999999999999999862 2 38999999998753 1444557788877654
Q ss_pred c
Q 026558 124 D 124 (237)
Q Consensus 124 ~ 124 (237)
.
T Consensus 176 g 176 (263)
T KOG2730|consen 176 G 176 (263)
T ss_pred C
Confidence 3
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=7.1e-05 Score=62.84 Aligned_cols=108 Identities=19% Similarity=0.252 Sum_probs=81.4
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHc-----C----CCCCcEEEEccccccccccCCCccEEE
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKY-----S----NRPQLKYIKMDVRQMDEFQTGSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~-----~----~~~~~~~~~~d~~~~~~~~~~~fD~I~ 118 (237)
.+||-+|.|.|--..++.+.. ..+++-+|.+|+|++.++.+. . ..+++.++..|+.++..-....||.|+
T Consensus 291 ~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vI 370 (508)
T COG4262 291 RSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVI 370 (508)
T ss_pred ceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEE
Confidence 499999999999999999986 569999999999999998443 1 236889999999887644456899999
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.+.. +.- -..-.+-.-.++-.-+.+.|+++|.++++..
T Consensus 371 VDl~-DP~-tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 371 VDLP-DPS-TPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred EeCC-CCC-CcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 8632 100 0000122345677888999999999999763
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00025 Score=58.22 Aligned_cols=103 Identities=15% Similarity=0.278 Sum_probs=64.8
Q ss_pred CcEEEEccCCchhHH-HHHHc-C-CCeEEEEeCCHHHHHHHHHHcCC----CCCcEEEEccccccccccCCCccEEEecc
Q 026558 49 QRILIVGCGNSAFSE-GMVDD-G-YEDVVNVDISSVVIEAMMKKYSN----RPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~-~~~~~-~-~~~~~~vD~s~~~~~~a~~~~~~----~~~~~~~~~d~~~~~~~~~~~fD~I~~~~ 121 (237)
.+|+=||||.=-++. .+++. + ...++++|+++++++.+++-... ..++.|..+|..+.. ..-..||+|+...
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~-~dl~~~DvV~lAa 200 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVT-YDLKEYDVVFLAA 200 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG--GG----SEEEE-T
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccc-cccccCCEEEEhh
Confidence 389999999865554 44443 3 34799999999999999887641 247899999998775 4446899999875
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
...- ..+...++++++.+.++||..+++-..
T Consensus 201 lVg~------~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 201 LVGM------DAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp T-S----------SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred hccc------ccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 5431 335788999999999999999988753
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.99 E-value=3e-05 Score=56.92 Aligned_cols=108 Identities=20% Similarity=0.271 Sum_probs=71.4
Q ss_pred eEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccccccCC-CccEEEeccccceeccCC----CChHHHHHHHHHH
Q 026558 72 DVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTG-SFDSVVDKGTLDSLLCGS----NSRQNATQMLKEV 143 (237)
Q Consensus 72 ~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~-~fD~I~~~~~l~~~~~~~----~~~~~~~~~l~~~ 143 (237)
+|+|+||.+++++.+++++... .+++++..+-.++..+-+. ++|+++-+ |.+++.+. ..++.....++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 5899999999999999999532 3689999888888754444 89999874 55665433 3456777899999
Q ss_pred HHhcCCCcEEEEEEcCC-chh------hhhcc--cCCCCceEEEEEe
Q 026558 144 WRVLKDKGVYILVTYGA-PIY------RLGML--RDSCSWNIKLHVI 181 (237)
Q Consensus 144 ~~~L~pgG~l~~~~~~~-~~~------~~~~~--~~~~~w~~~~~~~ 181 (237)
.++|+|||++.++.|.. +.. -..++ .....|.+.....
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~ 125 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQF 125 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEE
T ss_pred HHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEc
Confidence 99999999999988743 322 12222 4456777655544
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00011 Score=58.42 Aligned_cols=110 Identities=18% Similarity=0.265 Sum_probs=78.8
Q ss_pred hHHHHHhhC-CCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCc-EEEEcccccccc-ccCC
Q 026558 36 LAPLIKLYV-PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQL-KYIKMDVRQMDE-FQTG 112 (237)
Q Consensus 36 ~~~~l~~~~-~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~-~~~~~d~~~~~~-~~~~ 112 (237)
+..++..+. ...+..+||+|+.||.++-.++++|...|+++|..-..+.+--++- +++ .+...|+..+.. .-.+
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d---~rV~~~E~tN~r~l~~~~~~~ 143 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND---PRVIVLERTNVRYLTPEDFTE 143 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC---CcEEEEecCChhhCCHHHccc
Confidence 444555443 2333499999999999999999999889999999887766544332 444 345666665431 1133
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
..|++++.-.+ -....+|..+..++++++.++...-
T Consensus 144 ~~d~~v~DvSF----------ISL~~iLp~l~~l~~~~~~~v~LvK 179 (245)
T COG1189 144 KPDLIVIDVSF----------ISLKLILPALLLLLKDGGDLVLLVK 179 (245)
T ss_pred CCCeEEEEeeh----------hhHHHHHHHHHHhcCCCceEEEEec
Confidence 78999987654 3458899999999999998887653
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00031 Score=55.21 Aligned_cols=130 Identities=17% Similarity=0.114 Sum_probs=93.3
Q ss_pred HHhhCCCCCCcEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccccccCCCcc
Q 026558 40 IKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 40 l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD 115 (237)
+..++..+. ++.|+||.-|.+..++.+.+. ..+++.|+++..++.|.++++.. +.+++..+|..... -.+..+|
T Consensus 10 va~~V~~~~-~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l-~~~d~~d 87 (226)
T COG2384 10 VANLVKQGA-RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL-ELEDEID 87 (226)
T ss_pred HHHHHHcCC-ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc-CccCCcC
Confidence 444555665 799999999999999999874 48999999999999999998643 35667777774432 2345799
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchhhhhcccCCCCceEEEEEe
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVI 181 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 181 (237)
+|+..++ +-.....+|++-.+.|+.--+++++....+..-..|+ ...+|.+..+.+
T Consensus 88 ~ivIAGM---------GG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L-~~~~~~I~~E~i 143 (226)
T COG2384 88 VIVIAGM---------GGTLIREILEEGKEKLKGVERLILQPNIHTYELREWL-SANSYEIKAETI 143 (226)
T ss_pred EEEEeCC---------cHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHH-HhCCceeeeeee
Confidence 9987754 3356788899998888855578777655554433343 235666655544
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=6.7e-05 Score=60.35 Aligned_cols=75 Identities=12% Similarity=-0.009 Sum_probs=60.0
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC-----------CCcEEEEccccccccccCCCccEEE
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-----------PQLKYIKMDVRQMDEFQTGSFDSVV 118 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~-----------~~~~~~~~d~~~~~~~~~~~fD~I~ 118 (237)
+|||+-+|+|..+..++..|. +|+++|-++.+....++.++.. .+++++.+|..++..-....||+|+
T Consensus 91 ~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVY 169 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (250)
T ss_pred EEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEE
Confidence 899999999999999999986 7999999999988888776421 3577888888775422234799999
Q ss_pred eccccce
Q 026558 119 DKGTLDS 125 (237)
Q Consensus 119 ~~~~l~~ 125 (237)
.+.++.+
T Consensus 170 lDPMfp~ 176 (250)
T PRK10742 170 LDPMFPH 176 (250)
T ss_pred ECCCCCC
Confidence 9877644
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00015 Score=61.91 Aligned_cols=115 Identities=16% Similarity=0.188 Sum_probs=84.6
Q ss_pred CCCCCcEEEEccCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccc--ccCCCccEEE
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDE--FQTGSFDSVV 118 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~--~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~--~~~~~fD~I~ 118 (237)
++++.+|||+++-.|.-+.+++.. ....+++.|.+..-+...+.++. +..+.-++..|..+++. ++. +||.|+
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceee
Confidence 444459999999999888887764 23489999999999999998884 33466777778876652 444 899999
Q ss_pred eccccce--eccCC------C-------ChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 119 DKGTLDS--LLCGS------N-------SRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 119 ~~~~l~~--~~~~~------~-------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
...+..- +.+.. . -...++++|..+...+++||+++..|.+-
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 9877654 21111 0 11256678999999999999999988643
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.5e-05 Score=58.09 Aligned_cols=109 Identities=14% Similarity=0.202 Sum_probs=68.5
Q ss_pred cEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcC---------CCCCcEEEEccccccc-c-ccCCCcc-E
Q 026558 50 RILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS---------NRPQLKYIKMDVRQMD-E-FQTGSFD-S 116 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~---------~~~~~~~~~~d~~~~~-~-~~~~~fD-~ 116 (237)
.+.|||||.|.++..++.... .-+.|.+|--.+.+..++++. ..+|+.+.+.++.... . |..++.+ .
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLskm 142 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSKM 142 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccccc
Confidence 799999999999999999874 388899999888888888773 1347778877776543 1 2222211 1
Q ss_pred EEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 117 I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.++..--|.---....+--...++.+..-+|++||.++..+.
T Consensus 143 ff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 143 FFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred eeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 111111110000000000123478888999999999988773
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.1e-05 Score=56.68 Aligned_cols=97 Identities=16% Similarity=0.141 Sum_probs=45.3
Q ss_pred EEEccCCchhHHHHHHcC---C-CeEEEEeCCHH---HHHHHHHHcCCCCCcEEEEccccccc-cccCCCccEEEecccc
Q 026558 52 LIVGCGNSAFSEGMVDDG---Y-EDVVNVDISSV---VIEAMMKKYSNRPQLKYIKMDVRQMD-EFQTGSFDSVVDKGTL 123 (237)
Q Consensus 52 LdlG~G~G~~~~~~~~~~---~-~~~~~vD~s~~---~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~~~fD~I~~~~~l 123 (237)
||+|+..|..+..+++.. . .+++++|..+. ..+..++ ..-..+++++.++..+.. .++.+++|+|+..+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD- 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-
Confidence 689999999988887643 1 37999999994 3333332 111247899999997642 244578999998753
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
| ..+.....++.+.+.|+|||++++-+
T Consensus 79 H-------~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 H-------SYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred C-------CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 2 22677888999999999999988753
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.79 E-value=7.9e-05 Score=65.14 Aligned_cols=121 Identities=17% Similarity=0.325 Sum_probs=79.7
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHH----HHHHHHHHcCCCCCcEEEEcccc-ccccccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSV----VIEAMMKKYSNRPQLKYIKMDVR-QMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~----~~~~a~~~~~~~~~~~~~~~d~~-~~~~~~~~~fD~I~~~~~l 123 (237)
..|+|..+|.|.++.++.+.. ++.+..-|. .+...-++ .-+-..+ |.. .++ .-...||+|.+++.+
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~~ntL~vIydR----GLIG~yh-DWCE~fs-TYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDP---VWVMNVVPVSGPNTLPVIYDR----GLIGVYH-DWCEAFS-TYPRTYDLLHADGLF 437 (506)
T ss_pred eeeeeecccccHHHHHhccCC---ceEEEecccCCCCcchhhhhc----ccchhcc-chhhccC-CCCcchhheehhhhh
Confidence 479999999999999998775 344433332 12211111 1111111 222 233 235789999999887
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchhhhhcccCCCCceEEEEEec
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVIE 182 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 182 (237)
... ...-....++-+|.|+|+|+|.+++-+...-......+.....|........
T Consensus 438 s~~----~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~e 492 (506)
T PF03141_consen 438 SLY----KDRCEMEDILLEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDTE 492 (506)
T ss_pred hhh----cccccHHHHHHHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcceEEEEecC
Confidence 665 3456788999999999999999999875444444444566778988887765
|
; GO: 0008168 methyltransferase activity |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00017 Score=53.56 Aligned_cols=75 Identities=16% Similarity=0.281 Sum_probs=53.9
Q ss_pred CcEEEEccCCchhHHHHHH-----cCCCeEEEEeCCHHHHHHHHHHcCC-----CCCcEEEEccccccccccCCCccEEE
Q 026558 49 QRILIVGCGNSAFSEGMVD-----DGYEDVVNVDISSVVIEAMMKKYSN-----RPQLKYIKMDVRQMDEFQTGSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~-----~~~~~~~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~d~~~~~~~~~~~fD~I~ 118 (237)
..|+|+|||.|.++..++. ....+++++|.++..++.+.++.+. ..+..+...+..+.. .....++++
T Consensus 27 ~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v 104 (141)
T PF13679_consen 27 ITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES--SSDPPDILV 104 (141)
T ss_pred CEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc--ccCCCeEEE
Confidence 4899999999999999988 5445999999999999998887632 134555555554432 245677777
Q ss_pred eccccce
Q 026558 119 DKGTLDS 125 (237)
Q Consensus 119 ~~~~l~~ 125 (237)
.-+....
T Consensus 105 gLHaCG~ 111 (141)
T PF13679_consen 105 GLHACGD 111 (141)
T ss_pred Eeecccc
Confidence 6555443
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.74 E-value=9.3e-05 Score=54.77 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=46.7
Q ss_pred cEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccc
Q 026558 50 RILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQM 106 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~ 106 (237)
.+||+|||.|.++..+++.+. .+++++|.++.+.+.++++++ +..++.++...+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCC
Confidence 489999999999999998874 379999999999999999875 234677777666543
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0012 Score=54.47 Aligned_cols=85 Identities=12% Similarity=0.232 Sum_probs=64.7
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEcccccccc----
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDE---- 108 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~--~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~---- 108 (237)
+.+.+..+.+.+.+..||.--|.|..+..+++.+. .+++|+|-++.+++.|++++.. .+++.+++.++.++..
T Consensus 12 l~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~~ 91 (314)
T COG0275 12 LNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALKE 91 (314)
T ss_pred HHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHHh
Confidence 34555555555556999999999999999999873 4799999999999999999864 4588899988876542
Q ss_pred ccCCCccEEEec
Q 026558 109 FQTGSFDSVVDK 120 (237)
Q Consensus 109 ~~~~~fD~I~~~ 120 (237)
...+++|-|+.+
T Consensus 92 ~~i~~vDGiL~D 103 (314)
T COG0275 92 LGIGKVDGILLD 103 (314)
T ss_pred cCCCceeEEEEe
Confidence 223466666654
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00041 Score=57.86 Aligned_cols=85 Identities=12% Similarity=0.240 Sum_probs=61.0
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEcccccccc----c
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDE----F 109 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~----~ 109 (237)
+.+.+..+.+.+.+.+||.--|.|..+..+++.. .++++|+|.++.+++.|++++.. ..++.++..++.++.. .
T Consensus 9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~~ 88 (310)
T PF01795_consen 9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKEL 88 (310)
T ss_dssp HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHHT
T ss_pred HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHHc
Confidence 4556666665555699999999999999999874 46999999999999999999864 3589999999987653 2
Q ss_pred -cCCCccEEEec
Q 026558 110 -QTGSFDSVVDK 120 (237)
Q Consensus 110 -~~~~fD~I~~~ 120 (237)
....+|-|+.+
T Consensus 89 ~~~~~~dgiL~D 100 (310)
T PF01795_consen 89 NGINKVDGILFD 100 (310)
T ss_dssp TTTS-EEEEEEE
T ss_pred cCCCccCEEEEc
Confidence 23578888875
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00029 Score=53.90 Aligned_cols=106 Identities=14% Similarity=0.153 Sum_probs=67.8
Q ss_pred CCCCCcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc-cccccc-------cccCCCc
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM-DVRQMD-------EFQTGSF 114 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~-d~~~~~-------~~~~~~f 114 (237)
.++. +|||+||..|+++..+.++. .+-+.|+|+-. +...+.+.++++ |+.+.. .++....
T Consensus 68 ~p~~-~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~V 137 (232)
T KOG4589|consen 68 RPED-TVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEPPEGATIIQGNDVTDPETYRKIFEALPNRPV 137 (232)
T ss_pred CCCC-EEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccCCCCcccccccccCCHHHHHHHHHhCCCCcc
Confidence 3444 99999999999998887764 45899999843 333346666666 776532 2467889
Q ss_pred cEEEeccccceeccCCCChHHHHH----HHHHHHHhcCCCcEEEEEEcCC
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQ----MLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~----~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
|+|++.+.-........+.....+ ++.-....++|+|.++.-.+..
T Consensus 138 dvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 138 DVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred cEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 999998654322111111112222 2333455678999999988755
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.58 E-value=7.3e-05 Score=55.73 Aligned_cols=102 Identities=14% Similarity=0.153 Sum_probs=70.5
Q ss_pred CcEEEEccCCchh-HHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCC-----CCcEEEEccccc-cccccCCCccEEEec
Q 026558 49 QRILIVGCGNSAF-SEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR-----PQLKYIKMDVRQ-MDEFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~G~~-~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~-~~~~~~~~fD~I~~~ 120 (237)
.+||++|.|--.+ ++.++... ...|..+|-+++.++..++..... ..+.++..+... ........||+|++.
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaA 110 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILAA 110 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEec
Confidence 3899999997444 44445443 449999999999999988776321 122222222211 111345689999999
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.++-.- +...++.+.+.++|+|.|..++..
T Consensus 111 DClFfd-------E~h~sLvdtIk~lL~p~g~Al~fs 140 (201)
T KOG3201|consen 111 DCLFFD-------EHHESLVDTIKSLLRPSGRALLFS 140 (201)
T ss_pred cchhHH-------HHHHHHHHHHHHHhCcccceeEec
Confidence 887554 778899999999999999976655
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0019 Score=50.63 Aligned_cols=109 Identities=17% Similarity=0.100 Sum_probs=66.8
Q ss_pred CcEEEEccCCchhHHHHHHc---CCCeEEEEeCCHHHHHHHHHHcC----------------------------------
Q 026558 49 QRILIVGCGNSAFSEGMVDD---GYEDVVNVDISSVVIEAMMKKYS---------------------------------- 91 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~---~~~~~~~vD~s~~~~~~a~~~~~---------------------------------- 91 (237)
-++.|.+||.|+++..+.-. .-..+++.||++.+++.|++|+.
T Consensus 53 ~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~ 132 (246)
T PF11599_consen 53 YTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESAD 132 (246)
T ss_dssp EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred eeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 38999999999988765322 23489999999999999885541
Q ss_pred ----------CCCCcEEEEcccccccc----ccCCCccEEEeccccceeccCCC--ChHHHHHHHHHHHHhcCCCcEEEE
Q 026558 92 ----------NRPQLKYIKMDVRQMDE----FQTGSFDSVVDKGTLDSLLCGSN--SRQNATQMLKEVWRVLKDKGVYIL 155 (237)
Q Consensus 92 ----------~~~~~~~~~~d~~~~~~----~~~~~fD~I~~~~~l~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~l~~ 155 (237)
+.....+.+.|+++... ......|+|+.+-+...+-.+.. +..-...+|+.++.+|..++++.+
T Consensus 133 RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 133 RLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVAV 212 (246)
T ss_dssp HHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEEE
T ss_pred HHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEEEE
Confidence 01124577778877431 12344799999988877754443 455677899999999966666666
Q ss_pred EE
Q 026558 156 VT 157 (237)
Q Consensus 156 ~~ 157 (237)
.+
T Consensus 213 ~~ 214 (246)
T PF11599_consen 213 SD 214 (246)
T ss_dssp EE
T ss_pred ec
Confidence 43
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0013 Score=53.37 Aligned_cols=96 Identities=14% Similarity=0.159 Sum_probs=73.1
Q ss_pred CCCCCcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEcccccccc-ccCCCccEEE
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDE-FQTGSFDSVV 118 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~-~~~~~fD~I~ 118 (237)
.++. +|||-|+|+|+++.++++.- -.+++.+|+.+...+.|++.++. ..++.+..-|+....- .....+|.|+
T Consensus 104 ~PGs-vV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVF 182 (314)
T KOG2915|consen 104 RPGS-VVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVF 182 (314)
T ss_pred CCCC-EEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceEE
Confidence 3444 99999999999999998863 24899999999999999988852 3588999989976541 2357899998
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEE
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVY 153 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l 153 (237)
.+.+ .+...+..++.+|+.+|.-
T Consensus 183 LDlP------------aPw~AiPha~~~lk~~g~r 205 (314)
T KOG2915|consen 183 LDLP------------APWEAIPHAAKILKDEGGR 205 (314)
T ss_pred EcCC------------ChhhhhhhhHHHhhhcCce
Confidence 8643 3455677778888877743
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00014 Score=63.66 Aligned_cols=56 Identities=20% Similarity=0.308 Sum_probs=48.8
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQ 105 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~ 105 (237)
..++|+.||||.++..+++.- ..|+|+++++.+++.|+.+.. +..|++|+++-+.+
T Consensus 385 k~llDv~CGTG~iglala~~~-~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALARGV-KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred cEEEEEeecCCceehhhhccc-cceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 489999999999999998875 499999999999999999985 44599999995554
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0013 Score=58.80 Aligned_cols=123 Identities=14% Similarity=0.104 Sum_probs=80.9
Q ss_pred hHHHHHhhCCC-CCCcEEEEccCCchhHHHHHHcC-----CCeEEEEeCCHHHHHHHHHHc--CCCC-CcEEEEcccccc
Q 026558 36 LAPLIKLYVPS-HHQRILIVGCGNSAFSEGMVDDG-----YEDVVNVDISSVVIEAMMKKY--SNRP-QLKYIKMDVRQM 106 (237)
Q Consensus 36 ~~~~l~~~~~~-~~~~iLdlG~G~G~~~~~~~~~~-----~~~~~~vD~s~~~~~~a~~~~--~~~~-~~~~~~~d~~~~ 106 (237)
+.+++...+.+ ...+|+|..||+|.......+.- ...++|.|+++.....|+.+. .+.. ++....+|...-
T Consensus 174 v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~ 253 (489)
T COG0286 174 VSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSN 253 (489)
T ss_pred HHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccC
Confidence 44555444443 33489999999998887665432 247999999999999999987 2322 345555555444
Q ss_pred ccc----cCCCccEEEeccccceecc----------------C-C-CChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 107 DEF----QTGSFDSVVDKGTLDSLLC----------------G-S-NSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 107 ~~~----~~~~fD~I~~~~~l~~~~~----------------~-~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+.. ..+.||.|+++.++...-. + . .....-..+++++...|+|||+..++..
T Consensus 254 ~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 254 PKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred CcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 322 3467999999987641100 0 1 1112237799999999999987665553
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00032 Score=57.40 Aligned_cols=116 Identities=19% Similarity=0.295 Sum_probs=85.4
Q ss_pred HHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC------CCCCcEEEEcccccccc-cc
Q 026558 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS------NRPQLKYIKMDVRQMDE-FQ 110 (237)
Q Consensus 39 ~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~------~~~~~~~~~~d~~~~~~-~~ 110 (237)
.+.....+.++++|-+|.|.|......+++. ...+..+|++...++..++-+. ..+++....+|...+.. ..
T Consensus 113 ~l~l~s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~ 192 (337)
T KOG1562|consen 113 HLALCSHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK 192 (337)
T ss_pred ccccccCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc
Confidence 3333334444589999999999999888774 4589999999999999887763 13578889998876543 34
Q ss_pred CCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 111 ~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+.||+|+.... +.+ ++.-....+.++..+.+.||+||+++.+.
T Consensus 193 ~~~~dVii~dss-dpv--gpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 193 ENPFDVIITDSS-DPV--GPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred cCCceEEEEecC-Ccc--chHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 789999998632 111 11122467789999999999999998865
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00041 Score=57.56 Aligned_cols=77 Identities=17% Similarity=0.078 Sum_probs=42.9
Q ss_pred cEEEEccCCch-hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC----CCcEEEEcccc-cc---ccccCCCccEEEec
Q 026558 50 RILIVGCGNSA-FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR----PQLKYIKMDVR-QM---DEFQTGSFDSVVDK 120 (237)
Q Consensus 50 ~iLdlG~G~G~-~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~-~~---~~~~~~~fD~I~~~ 120 (237)
++||||||..- +.+..++....+++|+||++..++.|+++.... ..++++...-. .+ .....+.||+.+|+
T Consensus 105 ~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmCN 184 (299)
T PF05971_consen 105 RGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMCN 184 (299)
T ss_dssp EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE-
T ss_pred EeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEecC
Confidence 79999999863 333333332349999999999999999998532 35666544221 11 11234689999999
Q ss_pred ccccee
Q 026558 121 GTLDSL 126 (237)
Q Consensus 121 ~~l~~~ 126 (237)
.+++..
T Consensus 185 PPFy~s 190 (299)
T PF05971_consen 185 PPFYSS 190 (299)
T ss_dssp ----SS
T ss_pred CccccC
Confidence 887643
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00032 Score=56.33 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=61.4
Q ss_pred cChHHHHHhhC---CCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEcccccccc
Q 026558 34 PSLAPLIKLYV---PSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDE 108 (237)
Q Consensus 34 ~~~~~~l~~~~---~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~ 108 (237)
..+.++....+ +... +|+|||||.--++..+.... ...|+|+||+..+++....-... ..+.++...|...-+
T Consensus 90 ~~Ld~fY~~if~~~~~p~-sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~- 167 (251)
T PF07091_consen 90 PNLDEFYDEIFGRIPPPD-SVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP- 167 (251)
T ss_dssp GGHHHHHHHHCCCS---S-EEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-
T ss_pred hhHHHHHHHHHhcCCCCc-hhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-
Confidence 33455554444 3344 99999999999888776554 35999999999999998877632 246677777887654
Q ss_pred ccCCCccEEEecccccee
Q 026558 109 FQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 109 ~~~~~fD~I~~~~~l~~~ 126 (237)
+....|+.+..=+++.+
T Consensus 168 -~~~~~DlaLllK~lp~l 184 (251)
T PF07091_consen 168 -PKEPADLALLLKTLPCL 184 (251)
T ss_dssp -TTSEESEEEEET-HHHH
T ss_pred -CCCCcchhhHHHHHHHH
Confidence 46779999988777776
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0024 Score=52.84 Aligned_cols=73 Identities=22% Similarity=0.330 Sum_probs=59.4
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccccc-CCCccEEEecccccee
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQ-TGSFDSVVDKGTLDSL 126 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~-~~~fD~I~~~~~l~~~ 126 (237)
+++|+.||.|.++..+.+.|...+.++|+++.+++..+.++.. .+..+|+.++.... ...+|+++...++..+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~----~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~f 75 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN----KLIEGDITKIDEKDFIPDIDLLTGGFPCQPF 75 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC----CCccCccccCchhhcCCCCCEEEeCCCChhh
Confidence 6899999999999999888876889999999999999999843 25677887765222 4579999999877655
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00052 Score=54.17 Aligned_cols=98 Identities=19% Similarity=0.218 Sum_probs=68.4
Q ss_pred CcEEEEccCCchhHHHHHHcC--------C--CeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc-------cccC
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--------Y--EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD-------EFQT 111 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--------~--~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-------~~~~ 111 (237)
.+++||++..|+++..+.++. . ..+++||+.+ ....+.+..+++|++... -|..
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~---------MaPI~GV~qlq~DIT~~stae~Ii~hfgg 113 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP---------MAPIEGVIQLQGDITSASTAEAIIEHFGG 113 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc---------CCccCceEEeecccCCHhHHHHHHHHhCC
Confidence 499999999999998887752 1 1399999855 223357888999998743 1556
Q ss_pred CCccEEEeccccceeccCCCC------hHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 112 GSFDSVVDKGTLDSLLCGSNS------RQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~~~~~------~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
++.|+|+|.+..+.. +.++ .+.+...|.-...+|+|||.|+.-.
T Consensus 114 ekAdlVvcDGAPDvT--GlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi 163 (294)
T KOG1099|consen 114 EKADLVVCDGAPDVT--GLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI 163 (294)
T ss_pred CCccEEEeCCCCCcc--ccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh
Confidence 799999999875432 1111 1223345666778999999998744
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0026 Score=53.80 Aligned_cols=119 Identities=15% Similarity=0.128 Sum_probs=79.7
Q ss_pred HhhCCCCCCcEEEEccCCchhHHHHHHcCC-----CeEEEEeCCHHHHHHHHHHcCC--CCCcEEEEcccccccc-----
Q 026558 41 KLYVPSHHQRILIVGCGNSAFSEGMVDDGY-----EDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDE----- 108 (237)
Q Consensus 41 ~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~-----~~~~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~----- 108 (237)
..-+.++. +|||+++-.|+-+..+.+..+ ..+++=|+++.-+...+...+. .++..+...|+..++.
T Consensus 150 ~L~v~p~~-~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~ 228 (375)
T KOG2198|consen 150 ALGVKPGD-KVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKD 228 (375)
T ss_pred hcccCCCC-eeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceecccccccc
Confidence 33344555 999999999999988887642 1688999999988888877743 2344555555544432
Q ss_pred ---ccCCCccEEEeccccceec---cC-------------CCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 109 ---FQTGSFDSVVDKGTLDSLL---CG-------------SNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 109 ---~~~~~fD~I~~~~~l~~~~---~~-------------~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.....||-|+++-+..+=. .. ..=+.-+..++.+..++|++||+++.+|.+-
T Consensus 229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 2345799999974432110 00 0111345578999999999999999988643
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0024 Score=49.30 Aligned_cols=106 Identities=13% Similarity=0.117 Sum_probs=67.1
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHH----------HHHHHHHHcCCCCCcEEEEccccccccccCCCccE
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSV----------VIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDS 116 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~----------~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~ 116 (237)
..|+|+-.|.|.++.-++..- ...|+++-..+. +-..+++. ...|++.+-.+...+. +.+..|+
T Consensus 50 ~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~--~~aN~e~~~~~~~A~~--~pq~~d~ 125 (238)
T COG4798 50 ATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP--VYANVEVIGKPLVALG--APQKLDL 125 (238)
T ss_pred CEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh--hhhhhhhhCCcccccC--CCCcccc
Confidence 399999999999999887752 125555543332 11111111 1235555555555443 4566777
Q ss_pred EEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 117 I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+......|.+...+-+.....++...+++.|||||++++.+.
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 777655554433333456778899999999999999999874
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0022 Score=51.12 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=72.8
Q ss_pred CCCCCcEEEEccCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc--cCCCccEEEec
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF--QTGSFDSVVDK 120 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~-~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~--~~~~fD~I~~~ 120 (237)
.++. +||-||+++|.....+..- + ...|+++|.|+..=+.+-...+..+|+-.+..|+.....+ .-.-.|+||++
T Consensus 155 kpGs-KVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFaD 233 (317)
T KOG1596|consen 155 KPGS-KVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFAD 233 (317)
T ss_pred cCCc-eEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEecc
Confidence 4454 9999999999888777664 2 2389999999766554444444447888888888765311 12355666654
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...+.+..-+.-++...|++||-+++..
T Consensus 234 ---------vaqpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 234 ---------VAQPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred ---------CCCchhhhhhhhhhhhhhccCCeEEEEE
Confidence 3455777777888999999999998865
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0041 Score=45.87 Aligned_cols=100 Identities=12% Similarity=0.231 Sum_probs=70.4
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHc--CC-CCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKY--SN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~--~~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
++.+|+|+|.|.+....++.+.-..+|+|++|..+..++-+. .+ ....+|..-|+.+.. +. .|..++..+.-
T Consensus 74 GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~d-l~--dy~~vviFgae-- 148 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVD-LR--DYRNVVIFGAE-- 148 (199)
T ss_pred CcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcc-cc--ccceEEEeehH--
Confidence 599999999999999999998448999999999998887654 11 246788888888775 43 34444433332
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
+....+-..+..-|..|..++.--+.-|
T Consensus 149 --------s~m~dLe~KL~~E~p~nt~vvacRFPLP 176 (199)
T KOG4058|consen 149 --------SVMPDLEDKLRTELPANTRVVACRFPLP 176 (199)
T ss_pred --------HHHhhhHHHHHhhCcCCCeEEEEecCCC
Confidence 2234455556667788877776655444
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.001 Score=55.81 Aligned_cols=108 Identities=17% Similarity=0.166 Sum_probs=66.4
Q ss_pred CcEEEEccCCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHcCCC--C----CcEEEEccccccccccCCCccEEEec
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNR--P----QLKYIKMDVRQMDEFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~--~~~~~vD~s~~~~~~a~~~~~~~--~----~~~~~~~d~~~~~~~~~~~fD~I~~~ 120 (237)
++|||+|.|.|..+.++-.-.. ..++.++.|+..-+....-..+. . ...-+..|-..++ ....|++++..
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp--~ad~ytl~i~~ 192 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLP--AADLYTLAIVL 192 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCC--ccceeehhhhh
Confidence 4899999999988766655442 37788888886655544333210 0 1112222333333 34456666654
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCch
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 162 (237)
.-|-+. .........++.+..++.|||.+++...+.|.
T Consensus 193 ~eLl~d----~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 193 DELLPD----GNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred hhhccc----cCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 443333 22334556899999999999999999876664
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.013 Score=46.91 Aligned_cols=100 Identities=17% Similarity=0.200 Sum_probs=58.6
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEcccccc-ccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQM-DEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~-~~~~~~~fD~I~~~~~l~~~ 126 (237)
++||-+|=+--......+.....+++.+||++..++..++..+. .-+++.+..|+.+. |..-.++||+++++.+.
T Consensus 46 k~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPy--- 122 (243)
T PF01861_consen 46 KRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPY--- 122 (243)
T ss_dssp -EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---S---
T ss_pred CEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCC---
Confidence 48999985553222222223356999999999999998877642 12489999999874 32335899999998653
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCc-EEEEE
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKG-VYILV 156 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG-~l~~~ 156 (237)
..+-..-++......|+..| ..++.
T Consensus 123 -----T~~G~~LFlsRgi~~Lk~~g~~gy~~ 148 (243)
T PF01861_consen 123 -----TPEGLKLFLSRGIEALKGEGCAGYFG 148 (243)
T ss_dssp -----SHHHHHHHHHHHHHTB-STT-EEEEE
T ss_pred -----CHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 33788899999999999766 44443
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0024 Score=50.75 Aligned_cols=51 Identities=18% Similarity=0.147 Sum_probs=41.7
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHH
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMK 88 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~ 88 (237)
+..+|.....++. .|||.-||+|+.+.++.+.+- +.+|+|+++..++.|++
T Consensus 181 ~~~lI~~~t~~gd-iVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 181 IERLIKASTNPGD-IVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHS-TT--EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred HHHHHHhhhccce-eeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 6677777777776 999999999999999998876 89999999999999875
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0027 Score=52.78 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=46.8
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS 91 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~ 91 (237)
+..+|.....++. .|||.-||+|+.+.++.+.+- +++|+|++++.++.|++++.
T Consensus 198 ~erlI~~~S~~GD-~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 198 LKRIILASSNPGD-IVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHhCCCCC-EEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHH
Confidence 5556666667776 999999999999999888875 99999999999999999974
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0095 Score=53.37 Aligned_cols=98 Identities=16% Similarity=0.254 Sum_probs=65.7
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc-----------cc-c-------
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-----------MD-E------- 108 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-----------~~-~------- 108 (237)
.+|+-+|||. |..++..++...+.|+++|.+++.++.+++.- .++...|..+ +. +
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslG-----A~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMG-----AEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-----CeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 4999999999 77777777765458999999999999988742 2322222211 10 0
Q ss_pred -ccC--CCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 109 -FQT--GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 109 -~~~--~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+.+ ..+|+|+....... ......+.+++.+.+||||+++.+..
T Consensus 241 ~~~~~~~gaDVVIetag~pg-------~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPG-------KPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCCCCc-------ccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 111 46999998643211 12233446999999999999887764
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0081 Score=50.80 Aligned_cols=95 Identities=16% Similarity=0.192 Sum_probs=65.6
Q ss_pred CCCCCcEEEEccC-CchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcc-ccccccccCCCccEEEeccc
Q 026558 45 PSHHQRILIVGCG-NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD-VRQMDEFQTGSFDSVVDKGT 122 (237)
Q Consensus 45 ~~~~~~iLdlG~G-~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d-~~~~~~~~~~~fD~I~~~~~ 122 (237)
.++. +|+-+|+| .|..++.+++.-..+|+++|.+++-++.|++--. ..++... ....... .+.||+|+..-.
T Consensus 165 ~pG~-~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA----d~~i~~~~~~~~~~~-~~~~d~ii~tv~ 238 (339)
T COG1064 165 KPGK-WVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA----DHVINSSDSDALEAV-KEIADAIIDTVG 238 (339)
T ss_pred CCCC-EEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC----cEEEEcCCchhhHHh-HhhCcEEEECCC
Confidence 3444 88888886 3577777787433699999999999999998842 2333322 1112211 234999998533
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
...+....+.|++||++++.-..
T Consensus 239 --------------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 --------------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred --------------hhhHHHHHHHHhcCCEEEEECCC
Confidence 34578889999999999998755
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.002 Score=53.93 Aligned_cols=111 Identities=15% Similarity=0.071 Sum_probs=77.4
Q ss_pred CCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHH-------HHHcCCC----CCcEEEEccccccccccCCC
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAM-------MKKYSNR----PQLKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a-------~~~~~~~----~~~~~~~~d~~~~~~~~~~~ 113 (237)
.++. .|.|.-.|||+++...+.-|. -++|.||+-.++... +.+++.. .-+.++.+|..+.+--....
T Consensus 207 ~pGd-ivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~ 284 (421)
T KOG2671|consen 207 KPGD-IVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLK 284 (421)
T ss_pred CCCC-EEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcce
Confidence 3444 899999999999999988875 899999998887732 3333322 24678888988877344678
Q ss_pred ccEEEecccccee----------------------ccCCCC----hHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 114 FDSVVDKGTLDSL----------------------LCGSNS----RQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 114 fD~I~~~~~l~~~----------------------~~~~~~----~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
||.|+|+.+...- +++..+ .....++|.-..+.|..||++++..
T Consensus 285 fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 285 FDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred eeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEec
Confidence 9999998664211 000000 1133456777889999999999865
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0039 Score=53.82 Aligned_cols=97 Identities=16% Similarity=0.245 Sum_probs=69.4
Q ss_pred cEEEEccCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHcC--CCC--CcEEEEccccccccccCCCccEEEecccc
Q 026558 50 RILIVGCGNSAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYS--NRP--QLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~--~~~~~~~vD~s~~~~~~a~~~~~--~~~--~~~~~~~d~~~~~~~~~~~fD~I~~~~~l 123 (237)
+|||.=+|+|.=++..+.. +..+++.-|+|+.+++..++|.+ +.. .+++.+.|+..+-......||+|=.+
T Consensus 52 ~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD--- 128 (377)
T PF02005_consen 52 RVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD--- 128 (377)
T ss_dssp EEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE----
T ss_pred eEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC---
Confidence 8999999999766665554 44599999999999999999973 322 47788889877632357889999554
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+ -....+|+.+.+.++.||.+.+..
T Consensus 129 -Pf-------GSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 129 -PF-------GSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp --S-------S--HHHHHHHHHHEEEEEEEEEEE
T ss_pred -CC-------CCccHhHHHHHHHhhcCCEEEEec
Confidence 22 445779999999999999998853
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0074 Score=50.29 Aligned_cols=108 Identities=16% Similarity=0.258 Sum_probs=72.3
Q ss_pred CCCCCcEEEEccCC-chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEE-----ccccccc--cccCCCcc
Q 026558 45 PSHHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK-----MDVRQMD--EFQTGSFD 115 (237)
Q Consensus 45 ~~~~~~iLdlG~G~-G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~-----~d~~~~~--~~~~~~fD 115 (237)
..+. +||-+|+|+ |-.+...++. |..+++.+|+++..++.|++ +.. ..+.... .++.+.- .+....+|
T Consensus 168 k~Gs-~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga-~~~~~~~~~~~~~~~~~~v~~~~g~~~~d 244 (354)
T KOG0024|consen 168 KKGS-KVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGA-TVTDPSSHKSSPQELAELVEKALGKKQPD 244 (354)
T ss_pred ccCC-eEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCC-eEEeeccccccHHHHHHHHHhhccccCCC
Confidence 3444 999999999 7777777776 45699999999999999999 521 1111111 1111110 12335699
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchhhhhcc
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGML 168 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~ 168 (237)
+.+....+ ...++.+...+++||.+++..+..+....+..
T Consensus 245 ~~~dCsG~-------------~~~~~aai~a~r~gGt~vlvg~g~~~~~fpi~ 284 (354)
T KOG0024|consen 245 VTFDCSGA-------------EVTIRAAIKATRSGGTVVLVGMGAEEIQFPII 284 (354)
T ss_pred eEEEccCc-------------hHHHHHHHHHhccCCEEEEeccCCCccccChh
Confidence 99886544 33577789999999998888877765444433
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0095 Score=48.18 Aligned_cols=101 Identities=15% Similarity=0.125 Sum_probs=66.5
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-------CC-CCcEEEEcccccccc--ccCCC-ccEEE
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-------NR-PQLKYIKMDVRQMDE--FQTGS-FDSVV 118 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-------~~-~~~~~~~~d~~~~~~--~~~~~-fD~I~ 118 (237)
.||++|+|+|-.++.++..+...+...|+... +...+.+.. +. ..+.+...+..+.+. +..+. +|+|+
T Consensus 89 ~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~-~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dlil 167 (248)
T KOG2793|consen 89 NVLELGSGTGLVGILAALLLGAEVVLTDLPKV-VENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLIL 167 (248)
T ss_pred eEEEecCCccHHHHHHHHHhcceeccCCchhh-HHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEEE
Confidence 79999999998888888866568888887543 333333321 11 134444444433221 22233 99999
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.+.++... +....++..+...|..+|++++.+.
T Consensus 168 asDvvy~~-------~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 168 ASDVVYEE-------ESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred EeeeeecC-------CcchhHHHHHHHHHhcCCeEEEEEe
Confidence 99887655 6677788888889999997666664
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0054 Score=48.15 Aligned_cols=101 Identities=12% Similarity=0.101 Sum_probs=56.7
Q ss_pred CcEEEEccCCchhHHHHHHc-----CCCeEEEEeCCHHHHHH-HHHHcCCCCCcEEEEccccccccc-------cCCCcc
Q 026558 49 QRILIVGCGNSAFSEGMVDD-----GYEDVVNVDISSVVIEA-MMKKYSNRPQLKYIKMDVRQMDEF-------QTGSFD 115 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-----~~~~~~~vD~s~~~~~~-a~~~~~~~~~~~~~~~d~~~~~~~-------~~~~fD 115 (237)
..|+|+|.-.|..++++++. ...+|+|+|++....+. +.+...-.++++++++|..+...+ ......
T Consensus 34 d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~v 113 (206)
T PF04989_consen 34 DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHPV 113 (206)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SSE
T ss_pred CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCce
Confidence 38999999999888877653 23599999996443332 222222236899999999764311 123445
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+|+.... |. .+.....|+....++++|+++++.+
T Consensus 114 lVilDs~-H~-------~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 114 LVILDSS-HT-------HEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp EEEESS------------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred EEEECCC-cc-------HHHHHHHHHHhCccCCCCCEEEEEe
Confidence 6665532 22 2556778888999999999998855
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0044 Score=44.50 Aligned_cols=43 Identities=16% Similarity=0.093 Sum_probs=40.1
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS 91 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~ 91 (237)
++|+|+|++-|..+++++-+|...|++++.++...+..+++++
T Consensus 30 KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k 72 (156)
T PHA01634 30 RTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCA 72 (156)
T ss_pred CEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhh
Confidence 4999999999999999999997799999999999999999874
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0068 Score=48.70 Aligned_cols=54 Identities=15% Similarity=0.237 Sum_probs=45.5
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS 91 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~ 91 (237)
+..++.....++. .|||.-||+|+.+.+..+.+. ..+|+|++++..+.+.+++.
T Consensus 153 ~~~~i~~~s~~g~-~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 153 LQPLIESFTHPNA-IVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred HHHHHHHhCCCCC-EEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHH
Confidence 4556665666665 999999999999999988875 89999999999999998874
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0071 Score=48.47 Aligned_cols=75 Identities=16% Similarity=0.133 Sum_probs=47.7
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-----CC------CCcEEEEccccccccccCCCccEEE
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-----NR------PQLKYIKMDVRQMDEFQTGSFDSVV 118 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-----~~------~~~~~~~~d~~~~~~~~~~~fD~I~ 118 (237)
+|||.-+|-|..+..++..|. +|+++|-||.+....+.-++ .. .+++++.+|..++...+..+||+|.
T Consensus 78 ~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY 156 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVY 156 (234)
T ss_dssp -EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEE
T ss_pred EEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEE
Confidence 899999999999999988875 99999999988666553321 11 2688999999886545578999999
Q ss_pred eccccce
Q 026558 119 DKGTLDS 125 (237)
Q Consensus 119 ~~~~l~~ 125 (237)
.+..+.+
T Consensus 157 ~DPMFp~ 163 (234)
T PF04445_consen 157 FDPMFPE 163 (234)
T ss_dssp E--S---
T ss_pred ECCCCCC
Confidence 9877654
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.013 Score=49.67 Aligned_cols=107 Identities=16% Similarity=0.169 Sum_probs=75.4
Q ss_pred HHHhhCCCCCCcEEEEccCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCC--CCCcEEEEccccccccccCCCcc
Q 026558 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 39 ~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
.++.+......+|+|.=+|+|.=++..+.. +..+++.-|+||.+++..++|..- ..+...+..|+..+-.-....||
T Consensus 44 ~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd 123 (380)
T COG1867 44 VLKAFGKLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFD 123 (380)
T ss_pred HHHHhhccCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCcc
Confidence 344443332348999999999877766655 434899999999999999999853 23555666777665312247899
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
+|=.+ .+ -.+..+++.+.+.++.||++.+.
T Consensus 124 ~IDiD----PF-------GSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 124 VIDID----PF-------GSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred EEecC----CC-------CCCchHHHHHHHHhhcCCEEEEE
Confidence 88443 22 34466888999999999998774
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.01 Score=50.00 Aligned_cols=71 Identities=20% Similarity=0.356 Sum_probs=56.6
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc--cccCCCccEEEecccccee
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD--EFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~--~~~~~~fD~I~~~~~l~~~ 126 (237)
+++||-||.|.+..-+.+.|+..+.++|+++.+.+.-+.++. ....+|+.++. .++. .+|+++...+++.+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-----~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~f 74 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-----EVICGDITEIDPSDLPK-DVDLLIGGPPCQGF 74 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-----EEEESHGGGCHHHHHHH-T-SEEEEE---TTT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-----ccccccccccccccccc-cceEEEeccCCceE
Confidence 689999999999999999997789999999999999999983 88889998765 2444 69999998877655
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.00089 Score=54.64 Aligned_cols=102 Identities=19% Similarity=0.223 Sum_probs=63.4
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHH-c------C--CCCCcE---EEEccccccccccCC--Cc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKK-Y------S--NRPQLK---YIKMDVRQMDEFQTG--SF 114 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~-~------~--~~~~~~---~~~~d~~~~~~~~~~--~f 114 (237)
++|||+|||.|--.+.+...+...+...|++.+.++...-. + . ...+.. +...+..++.....+ .|
T Consensus 118 k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~~~y 197 (282)
T KOG2920|consen 118 KRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTERTHY 197 (282)
T ss_pred ceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccccch
Confidence 49999999999999999888856888999998887421110 0 0 001111 122211121101123 79
Q ss_pred cEEEeccccceeccCCCChHHHHHH-HHHHHHhcCCCcEEEEEE
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQM-LKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~-l~~~~~~L~pgG~l~~~~ 157 (237)
|+|.++-++... .....+ .......++++|++++..
T Consensus 198 dlIlsSetiy~~-------~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 198 DLILSSETIYSI-------DSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred hhhhhhhhhhCc-------chhhhhHhhhhhhcCCccchhhhhh
Confidence 999998877654 444444 666677888999887753
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.017 Score=49.81 Aligned_cols=53 Identities=23% Similarity=0.233 Sum_probs=39.1
Q ss_pred ccCCCccEEEeccccceeccCCCC--------------------h-----------HHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 109 FQTGSFDSVVDKGTLDSLLCGSNS--------------------R-----------QNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 109 ~~~~~fD~I~~~~~l~~~~~~~~~--------------------~-----------~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
||.++.+++++...+||+..-+.+ + .|...+|+.=.+-|.|||++++..
T Consensus 158 fP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVC 237 (386)
T ss_pred cCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEE
Confidence 789999999999999988411100 0 134457777788899999999988
Q ss_pred cCCc
Q 026558 158 YGAP 161 (237)
Q Consensus 158 ~~~~ 161 (237)
.+.+
T Consensus 238 ~Gr~ 241 (386)
T PLN02668 238 LGRT 241 (386)
T ss_pred ecCC
Confidence 7664
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.028 Score=47.44 Aligned_cols=72 Identities=14% Similarity=0.197 Sum_probs=56.6
Q ss_pred EEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 51 ILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 51 iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
|+||.||.|.++.-+.+.|...+.++|+++.+++.-+.++.. .+..+|+.++....-..+|+++...+++.+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~----~~~~~Di~~~~~~~~~~~dvl~gg~PCq~f 72 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN----KVPFGDITKISPSDIPDFDILLGGFPCQPF 72 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC----CCCccChhhhhhhhCCCcCEEEecCCCccc
Confidence 689999999999999888875778899999999999998843 455678877642112358999998777665
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0009 Score=49.66 Aligned_cols=44 Identities=27% Similarity=0.443 Sum_probs=39.8
Q ss_pred ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 109 ~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
|.+++.|+|++.++++|+ ..+.-..++++++|+|||||.+-+..
T Consensus 43 F~dns~d~iyaeHvlEHl-----t~~Eg~~alkechr~Lrp~G~LriAv 86 (185)
T COG4627 43 FEDNSVDAIYAEHVLEHL-----TYDEGTSALKECHRFLRPGGKLRIAV 86 (185)
T ss_pred CCCcchHHHHHHHHHHHH-----hHHHHHHHHHHHHHHhCcCcEEEEEc
Confidence 889999999999999998 56677889999999999999998865
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.018 Score=49.44 Aligned_cols=93 Identities=16% Similarity=0.178 Sum_probs=65.9
Q ss_pred cEEEEccCC-chhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccc-----ccccccC-CCccEEEecc
Q 026558 50 RILIVGCGN-SAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVR-----QMDEFQT-GSFDSVVDKG 121 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-----~~~~~~~-~~fD~I~~~~ 121 (237)
+|+-+|||+ |.++..+++.. ..+++.+|.++.-++.|++.... ........ ....... ..+|+++-..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 799999999 88877777764 56999999999999999996532 21111111 1111222 3699998754
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
. ....+..+.++++|+|.+++.-..
T Consensus 247 G-------------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 247 G-------------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred C-------------CHHHHHHHHHHhcCCCEEEEEecc
Confidence 3 244789999999999999887654
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.01 Score=47.15 Aligned_cols=76 Identities=18% Similarity=0.324 Sum_probs=49.3
Q ss_pred cEEEEccCCchhH--HHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCC----cEEEE-cccccc-cc--ccCCCccEEEe
Q 026558 50 RILIVGCGNSAFS--EGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQ----LKYIK-MDVRQM-DE--FQTGSFDSVVD 119 (237)
Q Consensus 50 ~iLdlG~G~G~~~--~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~----~~~~~-~d~~~~-~~--~~~~~fD~I~~ 119 (237)
++||||.|..-+- +-..+.++ +.+|.|+++..++.|+..+...++ ++... .|-..+ +. -..+.||+++|
T Consensus 81 ~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlC 159 (292)
T COG3129 81 RILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLC 159 (292)
T ss_pred EEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEec
Confidence 8999987764221 11234455 999999999999999999865442 33322 222211 11 12578999999
Q ss_pred cccccee
Q 026558 120 KGTLDSL 126 (237)
Q Consensus 120 ~~~l~~~ 126 (237)
+.++|..
T Consensus 160 NPPFh~s 166 (292)
T COG3129 160 NPPFHDS 166 (292)
T ss_pred CCCcchh
Confidence 9998743
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0075 Score=53.29 Aligned_cols=103 Identities=17% Similarity=0.301 Sum_probs=76.8
Q ss_pred cEEEEccCCchhHHHHHHc---C--CCeEEEEeCCHHHHHHHHHHc-C-CCCCcEEEEccccccccccCCCccEEEeccc
Q 026558 50 RILIVGCGNSAFSEGMVDD---G--YEDVVNVDISSVVIEAMMKKY-S-NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~---~--~~~~~~vD~s~~~~~~a~~~~-~-~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~ 122 (237)
+|+-+|+|.|-+.....+. . ..+++++|-+|.++...+.+- . ...++.++..|++++. .+.++.|++++- .
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~-ap~eq~DI~VSE-L 447 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWN-APREQADIIVSE-L 447 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccC-CchhhccchHHH-h
Confidence 6889999999887765443 1 238999999999988877643 1 3457899999999997 445889999875 3
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
|..+ ..-+.-.++|.-+-+.|+|+|+.+=..+
T Consensus 448 LGSF----GDNELSPECLDG~q~fLkpdgIsIP~sY 479 (649)
T KOG0822|consen 448 LGSF----GDNELSPECLDGAQKFLKPDGISIPSSY 479 (649)
T ss_pred hccc----cCccCCHHHHHHHHhhcCCCceEccchh
Confidence 3333 2225567789999999999998875443
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.023 Score=48.41 Aligned_cols=112 Identities=18% Similarity=0.075 Sum_probs=61.1
Q ss_pred cEEEEccCCchhHHHHHHc--------C---C------CeEEEEeCCHHHHHHHHHHcC-------CCCCcE--EEEccc
Q 026558 50 RILIVGCGNSAFSEGMVDD--------G---Y------EDVVNVDISSVVIEAMMKKYS-------NRPQLK--YIKMDV 103 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~--------~---~------~~~~~vD~s~~~~~~a~~~~~-------~~~~~~--~~~~d~ 103 (237)
+|+|+||..|..+..+.+. + . -+++.-|.=..-.+..-+.+. ..+++- -+.+.+
T Consensus 19 ~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpgSF 98 (334)
T PF03492_consen 19 RIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPGSF 98 (334)
T ss_dssp EEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES-T
T ss_pred EEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCchh
Confidence 8999999999888766442 1 0 267777763322222111110 112222 234555
Q ss_pred cccccccCCCccEEEeccccceeccCC---CC------------------h-----------HHHHHHHHHHHHhcCCCc
Q 026558 104 RQMDEFQTGSFDSVVDKGTLDSLLCGS---NS------------------R-----------QNATQMLKEVWRVLKDKG 151 (237)
Q Consensus 104 ~~~~~~~~~~fD~I~~~~~l~~~~~~~---~~------------------~-----------~~~~~~l~~~~~~L~pgG 151 (237)
-+-. +|.++.|++++..++||+..-+ .+ . .+...+|+.=.+-|+|||
T Consensus 99 y~rL-fP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG 177 (334)
T PF03492_consen 99 YGRL-FPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVPGG 177 (334)
T ss_dssp TS---S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_pred hhcc-CCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheeccCc
Confidence 4444 7899999999999999884211 00 1 245557777788899999
Q ss_pred EEEEEEcCCch
Q 026558 152 VYILVTYGAPI 162 (237)
Q Consensus 152 ~l~~~~~~~~~ 162 (237)
++++...+.+.
T Consensus 178 ~mvl~~~gr~~ 188 (334)
T PF03492_consen 178 RMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEE-ST
T ss_pred EEEEEEeeccc
Confidence 99998876654
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.042 Score=46.76 Aligned_cols=95 Identities=17% Similarity=0.258 Sum_probs=57.8
Q ss_pred CcEEEEccCC-chhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGN-SAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+||-.|||. |..+..+++.. ..+++++|.+++.++.+++.-.. .-+.....+..+.. ...+.+|+|+....
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~-~vi~~~~~~~~~~~-~~~g~~D~vid~~G---- 244 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD-KLVNPQNDDLDHYK-AEKGYFDVSFEVSG---- 244 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc-EEecCCcccHHHHh-ccCCCCCEEEECCC----
Confidence 3888888865 56666666654 33799999999999988874211 00000111122221 11235899887421
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
....++.+.+.|++||++++...
T Consensus 245 ---------~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 ---------HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ---------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 02356778889999999988653
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.01 Score=51.33 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=50.7
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccccccCCCccEEEe
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVD 119 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~I~~ 119 (237)
.|||||+|||.++..+++.|...+++++.-..|.+.|++..... .++.++..-..+...-+.-..|+++.
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhH
Confidence 79999999999999999999779999999999999999887432 35666554444433111223555544
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.17 Score=41.58 Aligned_cols=117 Identities=12% Similarity=0.109 Sum_probs=76.6
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCC-HHHHHHHHHHcC-----CCCCcEEEEccccc-cc-
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDIS-SVVIEAMMKKYS-----NRPQLKYIKMDVRQ-MD- 107 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s-~~~~~~a~~~~~-----~~~~~~~~~~d~~~-~~- 107 (237)
+.+.+...+..+...|+.||||-=.-...+... . .+..+|++ |++++.-++.+. ...+..++..|+.. +.
T Consensus 70 ~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~-~-~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~ 147 (260)
T TIGR00027 70 FDDFLLAAVAAGIRQVVILGAGLDTRAYRLPWP-D-GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPA 147 (260)
T ss_pred HHHHHHHHHhcCCcEEEEeCCccccHHHhcCCC-C-CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHH
Confidence 344555555444447999999986555544322 1 34455555 666666665554 13467788888862 11
Q ss_pred -----cccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 108 -----EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 108 -----~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
.+.....-++++-+++.++ +.+....+|+.+.+...||+.+++-...
T Consensus 148 ~L~~~gfd~~~ptl~i~EGvl~YL-----~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 148 ALAAAGFDPTAPTAWLWEGLLMYL-----TEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred HHHhCCCCCCCCeeeeecchhhcC-----CHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 1223445578888888888 8889999999999999899988876543
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.03 Score=47.51 Aligned_cols=48 Identities=6% Similarity=0.097 Sum_probs=37.8
Q ss_pred CCCCCcEEEEccCCchhHHHHHHcC---------CCeEEEEeCCHHHHHHHHHHcCC
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDDG---------YEDVVNVDISSVVIEAMMKKYSN 92 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~~---------~~~~~~vD~s~~~~~~a~~~~~~ 92 (237)
.+.+..++|+|+|+|.+...+++.. ..++..||+|++..+.=++++++
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 3444489999999999998876531 35999999999998887777754
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.065 Score=45.55 Aligned_cols=74 Identities=15% Similarity=0.315 Sum_probs=60.3
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc--ccCCCccEEEecccccee
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE--FQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~--~~~~~fD~I~~~~~l~~~ 126 (237)
+++||-||.|.+..-+...|+..+.++|+++.+++.-+.++. ...+...|+..... +....+|+++...+++.+
T Consensus 5 ~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~---~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~F 80 (328)
T COG0270 5 KVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP---HGDIILGDIKELDGEALRKSDVDVLIGGPPCQDF 80 (328)
T ss_pred eEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC---CCceeechHhhcChhhccccCCCEEEeCCCCcch
Confidence 799999999999999999998789999999999999999984 25677778876542 111279999999887765
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.0075 Score=42.01 Aligned_cols=30 Identities=27% Similarity=0.477 Sum_probs=26.6
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCC
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDIS 79 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s 79 (237)
...+|||||+|-+..-+.+.|+ .-+|+|.-
T Consensus 60 ~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 60 QGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred CceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 3899999999999999999987 78899964
|
; GO: 0008168 methyltransferase activity |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.0046 Score=50.84 Aligned_cols=91 Identities=19% Similarity=0.136 Sum_probs=64.5
Q ss_pred CcEEEEccCCchhHH-HHHHcCCCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSE-GMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~-~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
..|+|+-+|-|+++. .+...+...|+++|.+|..++..+.+.+.. ..+..+.+|.+... +....|.|...
T Consensus 196 eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~--~~~~AdrVnLG---- 269 (351)
T KOG1227|consen 196 EVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK--PRLRADRVNLG---- 269 (351)
T ss_pred chhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC--ccccchheeec----
Confidence 389999999999999 778888779999999999999999888532 24455666666654 46778888654
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcE
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGV 152 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~ 152 (237)
-++ .-++-...+.++|+|.|-
T Consensus 270 LlP-------Sse~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 270 LLP-------SSEQGWPTAIKALKPEGG 290 (351)
T ss_pred ccc-------ccccchHHHHHHhhhcCC
Confidence 231 112233346677776643
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.012 Score=44.08 Aligned_cols=104 Identities=15% Similarity=0.180 Sum_probs=64.1
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHH-HHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec-
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEA-MMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL- 127 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~-a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~- 127 (237)
+.+-+|+..-..=....++|.+++..+|.++--++. .+.+. ..+...|+...-..-.++||.+.|.++++|..
T Consensus 4 ~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~-----ssi~p~df~~~~~~y~~~fD~~as~~siEh~GL 78 (177)
T PF03269_consen 4 SGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL-----SSILPVDFAKNWQKYAGSFDFAASFSSIEHFGL 78 (177)
T ss_pred eEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc-----ccccHHHHHHHHHHhhccchhhheechhccccc
Confidence 678888876666566667777789999987632221 11111 11222233221112357899999999998873
Q ss_pred ---cCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 128 ---CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 128 ---~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.++-.+.--...+.++.++|||||.+++...
T Consensus 79 GRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 79 GRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred cccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 2222233334567888999999999998663
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.18 Score=44.81 Aligned_cols=77 Identities=12% Similarity=0.149 Sum_probs=58.4
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc----------------cCCC
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF----------------QTGS 113 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~----------------~~~~ 113 (237)
+++|+-||.|.+..-+...|...+.++|+++.+.+.-+.++...+.......|+.++... .-..
T Consensus 90 ~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~~p~ 169 (467)
T PRK10458 90 RFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQHIPD 169 (467)
T ss_pred eEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhccCCC
Confidence 899999999999999988887688999999999999888874334445556677655310 1125
Q ss_pred ccEEEecccccee
Q 026558 114 FDSVVDKGTLDSL 126 (237)
Q Consensus 114 fD~I~~~~~l~~~ 126 (237)
+|+++...+++.+
T Consensus 170 ~DvL~gGpPCQ~F 182 (467)
T PRK10458 170 HDVLLAGFPCQPF 182 (467)
T ss_pred CCEEEEcCCCCcc
Confidence 8999998877665
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.0032 Score=44.08 Aligned_cols=44 Identities=11% Similarity=0.286 Sum_probs=32.1
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+||+|+|-++.-+++ .+.+.+-...+++.+++.|+|||++++..
T Consensus 1 ~yDvilclSVtkWIH-Ln~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIH-LNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHH-HHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEE-ecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 489999988755442 01244678889999999999999999865
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.18 Score=40.65 Aligned_cols=105 Identities=21% Similarity=0.276 Sum_probs=71.9
Q ss_pred CCcEEEEccCCchhHHHHHHc----C-CCeEEEEeCCHHHHHHHHHHc-CCCCCcEE--EEcccccc-ccccC-CCccEE
Q 026558 48 HQRILIVGCGNSAFSEGMVDD----G-YEDVVNVDISSVVIEAMMKKY-SNRPQLKY--IKMDVRQM-DEFQT-GSFDSV 117 (237)
Q Consensus 48 ~~~iLdlG~G~G~~~~~~~~~----~-~~~~~~vD~s~~~~~~a~~~~-~~~~~~~~--~~~d~~~~-~~~~~-~~fD~I 117 (237)
....+|+|+|+..-+..+... + ..+++.+|+|...++...+.+ ...+.+.+ +++|.... ...+. ++==.+
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~~ 158 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLFV 158 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEEE
Confidence 348999999999877766543 3 349999999999988766555 34455443 56666432 11222 222234
Q ss_pred EeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+...++..+ ++..-..++..+...|+||-.+++-.
T Consensus 159 flGStlGN~-----tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 159 FLGSTLGNL-----TPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EecccccCC-----ChHHHHHHHHHHHhcCCCcceEEEec
Confidence 445566666 77888899999999999999887743
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.072 Score=42.80 Aligned_cols=62 Identities=15% Similarity=0.230 Sum_probs=42.8
Q ss_pred cEEEEcccccc-ccccCCCccEEEeccccceecc---C-----CCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 96 LKYIKMDVRQM-DEFQTGSFDSVVDKGTLDSLLC---G-----SNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 96 ~~~~~~d~~~~-~~~~~~~fD~I~~~~~l~~~~~---~-----~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
++++++|+.+. ..++++++|+|+++.+...-.- + ....+-...++.+++|+|||||.+++..
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 36788898764 3478999999999977631000 0 0111335678999999999999887654
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.033 Score=46.32 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=43.9
Q ss_pred CCcEEEEccccccc-cccCCCccEEEecccccee--ccCC-CC------hHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 94 PQLKYIKMDVRQMD-EFQTGSFDSVVDKGTLDSL--LCGS-NS------RQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 94 ~~~~~~~~d~~~~~-~~~~~~fD~I~~~~~l~~~--~~~~-~~------~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+..++++|+.+.. .+++++||+|+++.++..- +... +. ......++.++.++|+|||.+++..
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 34578999998742 3668899999999875321 0000 00 0223578999999999999998864
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.19 Score=43.51 Aligned_cols=105 Identities=13% Similarity=0.195 Sum_probs=64.7
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccc----c-cccc-cCCCccEEEec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVR----Q-MDEF-QTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~----~-~~~~-~~~~fD~I~~~ 120 (237)
.+||.+|||. |..+..+++.... ++++++.+++.++.+++... ..++...-. . +..+ ....+|+|+..
T Consensus 186 ~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~----~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 186 DTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG----AETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC----cEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 3899999987 8888888776543 69999999999999888631 122211111 1 1112 23469999885
Q ss_pred cccc-------eecc-CCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 121 GTLD-------SLLC-GSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 121 ~~l~-------~~~~-~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
-.-+ ++.. ...+..+....++++.++|+++|.++...
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 3111 0000 00011223557888999999999998865
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.091 Score=42.85 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=35.0
Q ss_pred CcEEEEccCCchhHHHHHHcC---------CCeEEEEeCCHHHHHHHHHHcCC
Q 026558 49 QRILIVGCGNSAFSEGMVDDG---------YEDVVNVDISSVVIEAMMKKYSN 92 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~---------~~~~~~vD~s~~~~~~a~~~~~~ 92 (237)
-+|+|+|+|+|.++..+++.. ..+++.+|+|+.+.+.-++++..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 389999999999998887641 24899999999999998888864
|
; PDB: 4F3N_A 1ZKD_B. |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.09 Score=47.17 Aligned_cols=96 Identities=17% Similarity=0.300 Sum_probs=62.3
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc-----------cc-c-------
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-----------MD-E------- 108 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-----------~~-~------- 108 (237)
.+++-+|+|. |.....++......++++|.++..++.++.. ..+++..|..+ +. +
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l-----Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~ 239 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM-----GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEME 239 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-----CCeEEeccccccccccccceeecCHHHHHHHHH
Confidence 4999999988 6666666665445899999999988888763 12333333211 00 0
Q ss_pred -cc--CCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 109 -FQ--TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 109 -~~--~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
+. -..+|+|+....+.. ...+.-+.+++.+.+|||++++=+
T Consensus 240 ~~~e~~~~~DIVI~TalipG-------~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 240 LFAAQAKEVDIIITTALIPG-------KPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHHhCCCCEEEECcccCC-------CCCCeeehHHHHhhCCCCCEEEEe
Confidence 11 256999988643321 133345788899999999987744
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.37 Score=41.00 Aligned_cols=90 Identities=10% Similarity=0.146 Sum_probs=57.2
Q ss_pred CcEEEEccCC-chhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGN-SAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~--~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+||-+|||. |..+..++++ +..+++++|.++.-++.+++ .. . .... .+.. ....+|+|+..-. .
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~---~-~~~~---~~~~--~~~g~d~viD~~G--~ 232 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-AD---E-TYLI---DDIP--EDLAVDHAFECVG--G 232 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cC---c-eeeh---hhhh--hccCCcEEEECCC--C
Confidence 3899999876 5566666653 34589999999988888865 21 1 1111 1111 1225899886321 0
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
......+....++|+++|++++.-.
T Consensus 233 --------~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 233 --------RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred --------CccHHHHHHHHHhCcCCcEEEEEee
Confidence 1123467888999999999987653
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.42 Score=38.89 Aligned_cols=118 Identities=15% Similarity=0.189 Sum_probs=68.6
Q ss_pred hHHHHHhhCCC-CCCcEEEEccCCchhHHHHH---Hc-C--CCeEEEEeCC--------------------------HHH
Q 026558 36 LAPLIKLYVPS-HHQRILIVGCGNSAFSEGMV---DD-G--YEDVVNVDIS--------------------------SVV 82 (237)
Q Consensus 36 ~~~~l~~~~~~-~~~~iLdlG~G~G~~~~~~~---~~-~--~~~~~~vD~s--------------------------~~~ 82 (237)
+..++...+.. -++.|+|.||-.|..++.++ +. + ..+++++|.- ...
T Consensus 62 L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s 141 (248)
T PF05711_consen 62 LYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVS 141 (248)
T ss_dssp HHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHH
T ss_pred HHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccC
Confidence 44445544422 22489999999997665543 22 1 2367787751 124
Q ss_pred HHHHHHHcCCC----CCcEEEEccccc-cccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 83 IEAMMKKYSNR----PQLKYIKMDVRQ-MDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 83 ~~~a~~~~~~~----~~~~~~~~d~~~-~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
++..++++... .++.++.+.+.+ ++..+.+++-++... .+.. +.....|+.++..|.|||++++-+
T Consensus 142 ~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD--~DlY-------esT~~aLe~lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 142 LEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLD--CDLY-------ESTKDALEFLYPRLSPGGIIIFDD 212 (248)
T ss_dssp HHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE-----SH-------HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred HHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEe--ccch-------HHHHHHHHHHHhhcCCCeEEEEeC
Confidence 56666776532 478999999865 333334444333332 2333 788999999999999999999988
Q ss_pred cCCch
Q 026558 158 YGAPI 162 (237)
Q Consensus 158 ~~~~~ 162 (237)
+..+.
T Consensus 213 Y~~~g 217 (248)
T PF05711_consen 213 YGHPG 217 (248)
T ss_dssp TTTHH
T ss_pred CCChH
Confidence 76643
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.81 Score=32.37 Aligned_cols=86 Identities=14% Similarity=0.230 Sum_probs=57.4
Q ss_pred cEEEEccCCc-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceecc
Q 026558 50 RILIVGCGNS-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 50 ~iLdlG~G~G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~ 128 (237)
+|+|+|-|.= ..+..++++|. .++++||++. +.. ..++++..|+++..---=...|+|.|--
T Consensus 16 kVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~-------~a~--~g~~~v~DDitnP~~~iY~~A~lIYSiR------- 78 (129)
T COG1255 16 KVVEVGIGFFLDVAKRLAERGF-DVLATDINEK-------TAP--EGLRFVVDDITNPNISIYEGADLIYSIR------- 78 (129)
T ss_pred cEEEEccchHHHHHHHHHHcCC-cEEEEecccc-------cCc--ccceEEEccCCCccHHHhhCccceeecC-------
Confidence 8999998873 55667788886 9999999886 111 4688999999876411124578888743
Q ss_pred CCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 129 GSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
++......+-.+.+.++- .+++..
T Consensus 79 ---pppEl~~~ildva~aVga--~l~I~p 102 (129)
T COG1255 79 ---PPPELQSAILDVAKAVGA--PLYIKP 102 (129)
T ss_pred ---CCHHHHHHHHHHHHhhCC--CEEEEe
Confidence 335556666666666553 444444
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.66 Score=39.26 Aligned_cols=88 Identities=9% Similarity=0.055 Sum_probs=55.9
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+||-.|+|. |..+..+++....++++++.++.-++.+++.-. ..+ .|..+. ..+.+|+++.... .
T Consensus 167 ~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga-----~~v-i~~~~~---~~~~~d~~i~~~~---~- 233 (329)
T TIGR02822 167 GRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGA-----ASA-GGAYDT---PPEPLDAAILFAP---A- 233 (329)
T ss_pred CEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCC-----cee-cccccc---CcccceEEEECCC---c-
Confidence 3899899754 555556666544489999999998888877532 111 111111 1245787654211 1
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
...+....+.|++||++++.-.
T Consensus 234 ---------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 ---------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ---------HHHHHHHHHhhCCCcEEEEEec
Confidence 2368888999999999987653
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.14 Score=36.73 Aligned_cols=87 Identities=17% Similarity=0.125 Sum_probs=58.8
Q ss_pred CCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc----c-ccCCCccEEEeccccceeccCCC
Q 026558 57 GNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----E-FQTGSFDSVVDKGTLDSLLCGSN 131 (237)
Q Consensus 57 G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~----~-~~~~~fD~I~~~~~l~~~~~~~~ 131 (237)
|.|..+..+++....+++++|.++.-++.+++.-. ..++..+-.++. . .....+|+|+....
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga----~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g--------- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGA----DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG--------- 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTE----SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS---------
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcc----cccccccccccccccccccccccceEEEEecC---------
Confidence 34777788887655799999999999999987631 122222222111 1 23357999987532
Q ss_pred ChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 132 SRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 132 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
....++....+|+++|++++.....
T Consensus 68 ----~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 ----SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ----SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ----cHHHHHHHHHHhccCCEEEEEEccC
Confidence 1457888999999999999886543
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.45 Score=39.95 Aligned_cols=91 Identities=16% Similarity=0.195 Sum_probs=58.7
Q ss_pred cEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccc-cc----ccccCCCccEEEecccc
Q 026558 50 RILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVR-QM----DEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-~~----~~~~~~~fD~I~~~~~l 123 (237)
+||..|+|. |..+..+++....++++++.++...+.+++.- +..+..+.. .. .......+|+|+....
T Consensus 168 ~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g- 241 (338)
T cd08254 168 TVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELG-----ADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVG- 241 (338)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhC-----CCEEEcCCCcCHHHHHHHhcCCCceEEEECCC-
Confidence 788888764 67777777764458999999999988886532 111111111 11 0123467999886421
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
....++++.+.|+++|.++....
T Consensus 242 ------------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 242 ------------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred ------------CHHHHHHHHHHhhcCCEEEEECC
Confidence 13467888999999999987653
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.13 Score=44.60 Aligned_cols=62 Identities=13% Similarity=0.202 Sum_probs=54.1
Q ss_pred CCcEEEEcccccccc-ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 94 PQLKYIKMDVRQMDE-FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 94 ~~~~~~~~d~~~~~~-~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.+++++.+++.+... .+++++|.++.....+++ +++...+.++++.+.++|||+++.-+...
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm-----~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWM-----DPEQLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhC-----CHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 688999999987642 568999999999999999 77899999999999999999999987554
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.26 Score=43.21 Aligned_cols=87 Identities=8% Similarity=0.107 Sum_probs=56.8
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|+-+|+|. |......++....+++.+|.++.....|++. .+... +..+. . ...|+|+....
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~-----G~~~~--~~~e~--v--~~aDVVI~atG----- 266 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME-----GYEVM--TMEEA--V--KEGDIFVTTTG----- 266 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc-----CCEEc--cHHHH--H--cCCCEEEECCC-----
Confidence 3999999998 6666666655434899999999887777654 22222 12221 1 35799987421
Q ss_pred cCCCChHHHHHHHHH-HHHhcCCCcEEEEEEcC
Q 026558 128 CGSNSRQNATQMLKE-VWRVLKDKGVYILVTYG 159 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~-~~~~L~pgG~l~~~~~~ 159 (237)
....+.. ..+.+++||+++.....
T Consensus 267 --------~~~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 267 --------NKDIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred --------CHHHHHHHHHhcCCCCcEEEEeCCC
Confidence 1234444 58999999999877643
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.48 Score=39.67 Aligned_cols=115 Identities=13% Similarity=0.162 Sum_probs=78.2
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCC-HHHHHHHHHHcCCCC-----CcEEEEcccccc--c-
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDIS-SVVIEAMMKKYSNRP-----QLKYIKMDVRQM--D- 107 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s-~~~~~~a~~~~~~~~-----~~~~~~~d~~~~--~- 107 (237)
.+.+...+..+...|+-||||-=.-...+-.. ..+...|++ |+.++.=++.++... ..+++..|+.+. +
T Consensus 82 D~~~~~~~~~g~~qvViLgaGLDTRayRl~~~--~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~ 159 (297)
T COG3315 82 DDFVRAALDAGIRQVVILGAGLDTRAYRLDWP--KGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQ 159 (297)
T ss_pred HHHHHHHHHhcccEEEEeccccccceeecCCC--CCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHH
Confidence 44455555555448999999874333222222 134444554 777777777665332 688999999742 2
Q ss_pred -----cccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 108 -----EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 108 -----~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.|.....=++++-+.+.++ +++...++|+.+...+.||..++....
T Consensus 160 ~L~~~G~d~~~pt~~iaEGLl~YL-----~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 160 ALAAAGFDRSRPTLWIAEGLLMYL-----PEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred HHHhcCCCcCCCeEEEeccccccC-----CHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 1335556678888899998 889999999999999999988877653
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.16 Score=42.45 Aligned_cols=107 Identities=20% Similarity=0.243 Sum_probs=72.6
Q ss_pred CcEEEEccCCchhHHHHHHcC-------C--------------CeEEEEeCCH--HHHHHHHHHcCCC------------
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-------Y--------------EDVVNVDISS--VVIEAMMKKYSNR------------ 93 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-------~--------------~~~~~vD~s~--~~~~~a~~~~~~~------------ 93 (237)
.+||-||.|.|.-..+++... . ..++.+||.+ .+++.....+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 389999999987655554321 0 2799999974 4455555444221
Q ss_pred -------CCcEEEEcccccccc------ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 94 -------PQLKYIKMDVRQMDE------FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 94 -------~~~~~~~~d~~~~~~------~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
-++.|.+.|+..+.. +.....++|..-+++.-+|+- +.....++|..+-..++||..+++++
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~--s~~kTt~FLl~Lt~~~~~GslLLVvD 242 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFST--SISKTTKFLLRLTDICPPGSLLLVVD 242 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhc--ChHHHHHHHHHHHhhcCCCcEEEEEc
Confidence 157789999977652 112356777776666544322 35778899999999999999999865
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.46 Score=36.91 Aligned_cols=101 Identities=12% Similarity=0.136 Sum_probs=68.9
Q ss_pred CCCcEEEEccCCchhHHHHHHc----C-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc-----ccCCCccE
Q 026558 47 HHQRILIVGCGNSAFSEGMVDD----G-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE-----FQTGSFDS 116 (237)
Q Consensus 47 ~~~~iLdlG~G~G~~~~~~~~~----~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~-----~~~~~fD~ 116 (237)
.+..|+|+|.-.|..+++++.. | ..++.++||+-..++.+.... +++.|+.++-.+... ...+.+--
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~---p~i~f~egss~dpai~eqi~~~~~~y~k 145 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREV---PDILFIEGSSTDPAIAEQIRRLKNEYPK 145 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcC---CCeEEEeCCCCCHHHHHHHHHHhcCCCc
Confidence 3348999999999888777653 4 249999999876665554432 789999998877531 11222333
Q ss_pred EEe-ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 117 VVD-KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 117 I~~-~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
|+. -..-|+. +.....++-..++|..|-++++.+
T Consensus 146 IfvilDsdHs~-------~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 146 IFVILDSDHSM-------EHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred EEEEecCCchH-------HHHHHHHHHhhhHhhcCceEEEec
Confidence 333 2233444 677777888889999999998865
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.36 Score=41.25 Aligned_cols=90 Identities=17% Similarity=0.220 Sum_probs=56.6
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeC---CHHHHHHHHHHcCCCCCcEEEEccccccc---cccCCCccEEEecc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDI---SSVVIEAMMKKYSNRPQLKYIKMDVRQMD---EFQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~---s~~~~~~a~~~~~~~~~~~~~~~d~~~~~---~~~~~~fD~I~~~~ 121 (237)
.+||-+|+|. |.++..+++....++++++. ++.-++.+++.- ..++ +..+.. ......+|+|+...
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~G-----a~~v--~~~~~~~~~~~~~~~~d~vid~~ 246 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELG-----ATYV--NSSKTPVAEVKLVGEFDLIIEAT 246 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcC-----CEEe--cCCccchhhhhhcCCCCEEEECc
Confidence 3888889865 66666677665448999987 677777776532 1221 111110 01134689888742
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
. . ...+..+.+.|+++|.+++...
T Consensus 247 g--~-----------~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 247 G--V-----------PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred C--C-----------HHHHHHHHHHccCCcEEEEEec
Confidence 1 0 2367788999999999877653
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.21 Score=46.06 Aligned_cols=98 Identities=18% Similarity=0.338 Sum_probs=62.5
Q ss_pred cEEEEccCCchhHHHHHHc----C-CCeEEEEeCCHHHHHHHHHHc----CC-------CCCcEEEEccccccccc----
Q 026558 50 RILIVGCGNSAFSEGMVDD----G-YEDVVNVDISSVVIEAMMKKY----SN-------RPQLKYIKMDVRQMDEF---- 109 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~----~-~~~~~~vD~s~~~~~~a~~~~----~~-------~~~~~~~~~d~~~~~~~---- 109 (237)
.|+-+|+|-|-+.....+. + ..++++||-++..+.....+. .. ...++++..|++.+..-
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999887665443 2 238999999966443333332 11 23589999999987411
Q ss_pred ------cCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCC----CcE
Q 026558 110 ------QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKD----KGV 152 (237)
Q Consensus 110 ------~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~p----gG~ 152 (237)
.-+++|+|+|- .|..+ ..-+.-.++|.-+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSE-LLGSF----GDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSE-LLGSL----GDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHh-hhccc----ccccCCHHHHHHHHHhhhhhcccccc
Confidence 01379999984 33333 1224455677777777776 675
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.24 Score=46.28 Aligned_cols=104 Identities=10% Similarity=-0.012 Sum_probs=60.8
Q ss_pred cEEEEccCCchhHHHHHHcC-------------CCeEEEEeCCH---HHHHHHHHH-----------c-------CCC--
Q 026558 50 RILIVGCGNSAFSEGMVDDG-------------YEDVVNVDISS---VVIEAMMKK-----------Y-------SNR-- 93 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~-------------~~~~~~vD~s~---~~~~~a~~~-----------~-------~~~-- 93 (237)
+|+|+|=|+|.......+.. .-+++++|..| +.+..+... . .+.
T Consensus 60 ~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~ 139 (662)
T PRK01747 60 VIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCHR 139 (662)
T ss_pred EEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCceE
Confidence 89999999997655443211 12889999644 333222211 1 010
Q ss_pred -----C--CcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 94 -----P--QLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 94 -----~--~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
. .+.+..+|+.+...-....+|+++.+++--.- ++.-=...+++.+.++++|||++.-.+
T Consensus 140 ~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~----np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 140 LLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAK----NPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred EEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCcc----ChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 1 23456677765431123569999887531110 111223679999999999999987544
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.59 Score=39.14 Aligned_cols=85 Identities=14% Similarity=0.190 Sum_probs=54.2
Q ss_pred CcEEEEccCC-chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.++|-+|||. |.++..+++. |...+.++|.++..++.+.+.. + .|..+. ....+|+|+....
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~-------~--i~~~~~---~~~g~Dvvid~~G---- 209 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE-------V--LDPEKD---PRRDYRAIYDASG---- 209 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc-------c--cChhhc---cCCCCCEEEECCC----
Confidence 3788888876 6677777765 4435778898887776665321 1 111111 1346899987422
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
....++.+.+.|+++|++++.-.
T Consensus 210 ---------~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 ---------DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ---------CHHHHHHHHHhhhcCcEEEEEee
Confidence 12356778899999999987653
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.37 Score=40.30 Aligned_cols=98 Identities=11% Similarity=0.158 Sum_probs=71.3
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|.-||.|. |.....++--..+.|+.+|+|..-+++....+.. ++..+..+..++. ..-.+.|+|+..-.+
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~--rv~~~~st~~~ie-e~v~~aDlvIgaVLI---- 241 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG--RVHTLYSTPSNIE-EAVKKADLVIGAVLI---- 241 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc--eeEEEEcCHHHHH-HHhhhccEEEEEEEe----
Confidence 3788888887 6666666655556999999999999988888754 4666666666554 233578999875222
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
++...++-..+++...|+||++++=+
T Consensus 242 ---pgakaPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 242 ---PGAKAPKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred ---cCCCCceehhHHHHHhcCCCcEEEEE
Confidence 23466777899999999999988753
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.51 Score=41.96 Aligned_cols=88 Identities=10% Similarity=0.148 Sum_probs=54.5
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
++|+-+|+|. |......++....+|+++|.++.....+... ...+. +..+. -...|+|++...-.
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~-----G~~vv--~leEa----l~~ADVVI~tTGt~--- 320 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALME-----GYQVL--TLEDV----VSEADIFVTTTGNK--- 320 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhc-----CCeec--cHHHH----HhhCCEEEECCCCc---
Confidence 3899999987 5555555544334899999998654444332 12222 22222 13579998732211
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
.-+..+.++.|++||+++.....
T Consensus 321 ---------~vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 321 ---------DIIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred ---------cchHHHHHhcCCCCCEEEEcCCC
Confidence 12347788999999999887653
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.42 Score=40.37 Aligned_cols=93 Identities=19% Similarity=0.180 Sum_probs=56.1
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCe-EEEEeCCHHHHHHHHHHcCCCCCcEEEEc---cccccccc-cCCCccEEEeccc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYED-VVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQMDEF-QTGSFDSVVDKGT 122 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~-~~~vD~s~~~~~~a~~~~~~~~~~~~~~~---d~~~~~~~-~~~~fD~I~~~~~ 122 (237)
.+||-+|+|. |..+..+++....+ +++++.+++..+.+++.-. ..++.. +...+... ....+|+|+....
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga----~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g 240 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA----DFVINSGQDDVQEIRELTSGAGADVAIECSG 240 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC----CEEEcCCcchHHHHHHHhCCCCCCEEEECCC
Confidence 3888888754 55555666654345 9999999998888865421 111111 11111111 2346999986421
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
....+..+.+.|+++|++++...
T Consensus 241 -------------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 241 -------------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred -------------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 12345677889999999987653
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.45 Score=41.58 Aligned_cols=88 Identities=8% Similarity=0.077 Sum_probs=55.1
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
++|+-+|+|. |......++....+|+++|.++.....+... ...+. +..+. . ...|+|++.-.
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~-----G~~v~--~leea--l--~~aDVVItaTG----- 259 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMD-----GFRVM--TMEEA--A--KIGDIFITATG----- 259 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhc-----CCEeC--CHHHH--H--hcCCEEEECCC-----
Confidence 3999999998 6666666665445999999998654444322 22222 22222 1 35699887321
Q ss_pred cCCCChHHHHHHHH-HHHHhcCCCcEEEEEEcCC
Q 026558 128 CGSNSRQNATQMLK-EVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 128 ~~~~~~~~~~~~l~-~~~~~L~pgG~l~~~~~~~ 160 (237)
...++. +.+..+++|++++......
T Consensus 260 --------~~~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 260 --------NKDVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred --------CHHHHHHHHHhcCCCCcEEEEECCCC
Confidence 133444 4888999999998876544
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.14 Score=46.30 Aligned_cols=101 Identities=15% Similarity=0.096 Sum_probs=64.2
Q ss_pred CCCCCcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccc----c---cccCCCcc
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM----D---EFQTGSFD 115 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~----~---~~~~~~fD 115 (237)
.+.. .||||||.+|.+.-..++.. .+-|+|+|+-| +...++|.-++.|++.- + ....-+.|
T Consensus 43 ~~a~-~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p---------ikp~~~c~t~v~dIttd~cr~~l~k~l~t~~ad 112 (780)
T KOG1098|consen 43 EKAH-VVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP---------IKPIPNCDTLVEDITTDECRSKLRKILKTWKAD 112 (780)
T ss_pred cccc-hheeeccCCcHHHHHHHHhCCCCceEEEeeeee---------cccCCccchhhhhhhHHHHHHHHHHHHHhCCCc
Confidence 4444 99999999999998877764 34899999966 33446777777777531 1 02345669
Q ss_pred EEEeccccceeccCC----CChHHHHHHHHHHHHhcCCCcEEEE
Q 026558 116 SVVDKGTLDSLLCGS----NSRQNATQMLKEVWRVLKDKGVYIL 155 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~----~~~~~~~~~l~~~~~~L~pgG~l~~ 155 (237)
+|+..++...-.... .........++-+...|+.||.++-
T Consensus 113 vVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvt 156 (780)
T KOG1098|consen 113 VVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVT 156 (780)
T ss_pred EEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccc
Confidence 999886532110000 1112333456667788899999654
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=93.17 E-value=1.4 Score=30.93 Aligned_cols=90 Identities=17% Similarity=0.124 Sum_probs=60.5
Q ss_pred cCCchhHHHHHHc---CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc---ccCCCccEEEeccccceeccC
Q 026558 56 CGNSAFSEGMVDD---GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGTLDSLLCG 129 (237)
Q Consensus 56 ~G~G~~~~~~~~~---~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~I~~~~~l~~~~~~ 129 (237)
||.|.++..+++. ....++.+|.+++.++.+++.. +.++.+|..+... ..-.+.|.|++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~------- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-----VEVIYGDATDPEVLERAGIEKADAVVILTD------- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-----SEEEES-TTSHHHHHHTTGGCESEEEEESS-------
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-----cccccccchhhhHHhhcCccccCEEEEccC-------
Confidence 5667777776554 3338999999999999988773 7899999987542 23457888877422
Q ss_pred CCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 130 SNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 130 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.......+....+-+.|...++......
T Consensus 72 ---~d~~n~~~~~~~r~~~~~~~ii~~~~~~ 99 (116)
T PF02254_consen 72 ---DDEENLLIALLARELNPDIRIIARVNDP 99 (116)
T ss_dssp ---SHHHHHHHHHHHHHHTTTSEEEEEESSH
T ss_pred ---CHHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 1334445556677788888887766444
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.57 Score=36.15 Aligned_cols=97 Identities=14% Similarity=0.244 Sum_probs=60.2
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-------CC------------CcEEEEcccccccc
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-------RP------------QLKYIKMDVRQMDE 108 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-------~~------------~~~~~~~d~~~~~~ 108 (237)
+|.-+|+|+ | .+...++..|. +|+.+|.+++.++.+++++.. .. ++. ...|+.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH--
Confidence 366788887 4 34455566676 999999999999888876531 01 122 12222222
Q ss_pred ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 109 ~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
...|+|+-.- .+. .+..+++++++.+++.|+-++...+.+-+
T Consensus 77 ---~~adlViEai-~E~-------l~~K~~~~~~l~~~~~~~~ilasnTSsl~ 118 (180)
T PF02737_consen 77 ---VDADLVIEAI-PED-------LELKQELFAELDEICPPDTILASNTSSLS 118 (180)
T ss_dssp ---CTESEEEE-S--SS-------HHHHHHHHHHHHCCS-TTSEEEE--SSS-
T ss_pred ---hhhheehhhc-ccc-------HHHHHHHHHHHHHHhCCCceEEecCCCCC
Confidence 2678888753 333 38889999999999999999887765443
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.11 E-value=1.3 Score=36.51 Aligned_cols=93 Identities=17% Similarity=0.175 Sum_probs=56.5
Q ss_pred CcEEEEccCC-chhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEE-ccc-cccccc-cCCCccEEEecccc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIK-MDV-RQMDEF-QTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~-~d~-~~~~~~-~~~~fD~I~~~~~l 123 (237)
.+||-+|+|. |..+..+++.. ...++++|.++..++.+++.-.. .++. .+. ...... ....+|+|+....
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~----~~i~~~~~~~~~~~~~~~~g~d~vid~~G- 196 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT----ALAEPEVLAERQGGLQNGRGVDVALEFSG- 196 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc----EecCchhhHHHHHHHhCCCCCCEEEECCC-
Confidence 3888888865 55666666654 33489999999888887764211 1111 010 011001 2346899986321
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
....++.+.+.|+++|++++...
T Consensus 197 ------------~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 197 ------------ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred ------------ChHHHHHHHHHhcCCCEEEEecc
Confidence 12357778899999999987653
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.68 Score=38.10 Aligned_cols=103 Identities=18% Similarity=0.257 Sum_probs=74.0
Q ss_pred cEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccc-ccccCCCccEEEeccccce
Q 026558 50 RILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQM-DEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~-~~~~~~~fD~I~~~~~l~~ 125 (237)
.|+-+| ..-..+++++-.+ ..++..+||++..++.-.+-.+ +..|++.+..|+.+. |+....+||+++...+ ..
T Consensus 155 ~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPp-eT 232 (354)
T COG1568 155 EIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPP-ET 232 (354)
T ss_pred eEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCch-hh
Confidence 699998 3434444444444 4599999999999998877764 445788888899875 3233578999998744 34
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCC---cEEEEEEcCCc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDK---GVYILVTYGAP 161 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pg---G~l~~~~~~~~ 161 (237)
+ ...+.++..-...|+.- |++.+.....+
T Consensus 233 i-------~alk~FlgRGI~tLkg~~~aGyfgiT~ress 264 (354)
T COG1568 233 I-------KALKLFLGRGIATLKGEGCAGYFGITRRESS 264 (354)
T ss_pred H-------HHHHHHHhccHHHhcCCCccceEeeeecccc
Confidence 4 67788888888888866 77777665443
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=92.93 E-value=1.8 Score=32.77 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=60.6
Q ss_pred CcEEEEccCCchhHHHHHH--cCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---cCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVD--DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---QTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~--~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---~~~~fD~I~~~~~l 123 (237)
.+|+-|||=+-.. .+.+ ....+++..|++...-. +. ++ .|+.-|......+ -.++||+|+++.++
T Consensus 27 ~~iaclstPsl~~--~l~~~~~~~~~~~Lle~D~RF~~-----~~--~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DPPF 96 (162)
T PF10237_consen 27 TRIACLSTPSLYE--ALKKESKPRIQSFLLEYDRRFEQ-----FG--GD-EFVFYDYNEPEELPEELKGKFDVVVIDPPF 96 (162)
T ss_pred CEEEEEeCcHHHH--HHHhhcCCCccEEEEeecchHHh-----cC--Cc-ceEECCCCChhhhhhhcCCCceEEEECCCC
Confidence 3899998855333 3333 22348999999874432 21 12 4666666543222 26799999999987
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+ +.+-.......+..++++++.+++.+.
T Consensus 97 --l-----~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 97 --L-----SEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred --C-----CHHHHHHHHHHHHHHhCccceEEEecH
Confidence 3 336666677777777788899988873
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=92.85 E-value=1 Score=38.43 Aligned_cols=93 Identities=16% Similarity=0.195 Sum_probs=56.7
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEc---cccc-cccc-cCCCccEEEecc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQ-MDEF-QTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~---d~~~-~~~~-~~~~fD~I~~~~ 121 (237)
.+||-.|+|. |..+..+++.... .++++|.++..++.+++.-. ..++.. +..+ .... ....+|+|+...
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga----~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~ 253 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGA----THTVNSSGTDPVEAIRALTGGFGADVVIDAV 253 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC----ceEEcCCCcCHHHHHHHHhCCCCCCEEEECC
Confidence 3888888765 5666666665433 59999999999888865421 122211 1111 1111 234689998632
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
. . ...++...+.+++||++++.-.
T Consensus 254 g--~-----------~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 254 G--R-----------PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred C--C-----------HHHHHHHHHHhccCCEEEEECC
Confidence 1 0 2346667889999999987653
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=92.81 E-value=1.1 Score=32.35 Aligned_cols=99 Identities=16% Similarity=0.238 Sum_probs=52.5
Q ss_pred HHHHHhhCCCCCCcEEEEccCCc-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccccc-CCCc
Q 026558 37 APLIKLYVPSHHQRILIVGCGNS-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQ-TGSF 114 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~-~~~f 114 (237)
.+.+.... ... +|+|+|-|.= ..+..+.+.|. .++++|+.+. .+. ..+.++..|+.+.. +. =...
T Consensus 5 a~~ia~~~-~~~-kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~---~a~------~g~~~v~DDif~P~-l~iY~~a 71 (127)
T PF03686_consen 5 AEYIARLN-NYG-KIVEVGIGFNPEVAKKLKERGF-DVIATDINPR---KAP------EGVNFVVDDIFNPN-LEIYEGA 71 (127)
T ss_dssp HHHHHHHS--SS-EEEEET-TT--HHHHHHHHHS--EEEEE-SS-S-------------STTEE---SSS---HHHHTTE
T ss_pred HHHHHHhC-CCC-cEEEECcCCCHHHHHHHHHcCC-cEEEEECccc---ccc------cCcceeeecccCCC-HHHhcCC
Confidence 44444433 333 8999999884 56667777885 9999999987 111 36789999998754 21 2468
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
|+|.+..+ +...+..+-++.+.+. .-+++.+++.
T Consensus 72 ~lIYSiRP----------P~El~~~il~lA~~v~--adlii~pL~~ 105 (127)
T PF03686_consen 72 DLIYSIRP----------PPELQPPILELAKKVG--ADLIIRPLGG 105 (127)
T ss_dssp EEEEEES------------TTSHHHHHHHHHHHT---EEEEE-BTT
T ss_pred cEEEEeCC----------ChHHhHHHHHHHHHhC--CCEEEECCCC
Confidence 99988643 2333444444444443 5666666544
|
; PDB: 2K4M_A. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.92 Score=39.01 Aligned_cols=92 Identities=14% Similarity=0.160 Sum_probs=56.3
Q ss_pred cEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc----cccccCCCccEEEecccc
Q 026558 50 RILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ----MDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~----~~~~~~~~fD~I~~~~~l 123 (237)
+||-.|+|. |..+..+++.... .++++|.++..++.+++.-. ..++..+-.+ +.....+.+|+|+....
T Consensus 194 ~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga----~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G- 268 (371)
T cd08281 194 SVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA----TATVNAGDPNAVEQVRELTGGGVDYAFEMAG- 268 (371)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC----ceEeCCCchhHHHHHHHHhCCCCCEEEECCC-
Confidence 788888765 5566666665433 69999999999988865421 1121111111 11112236899986421
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
. ...+..+.+.|+++|.++....
T Consensus 269 -~-----------~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 269 -S-----------VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred -C-----------hHHHHHHHHHHhcCCEEEEEcc
Confidence 1 2356778889999999887653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.76 E-value=2.2 Score=33.83 Aligned_cols=105 Identities=16% Similarity=0.179 Sum_probs=60.6
Q ss_pred cEEEEccCCchhHHHH----HHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccE
Q 026558 50 RILIVGCGNSAFSEGM----VDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (237)
+||-.|++ |.++..+ ++.|. ++++++.+++..+.+.+......++.++.+|+.+.... .-+..|.
T Consensus 7 ~vlItGa~-g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 84 (238)
T PRK05786 7 KVAIIGVS-EGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAIDG 84 (238)
T ss_pred EEEEECCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCCE
Confidence 78889875 4444443 44555 89999999887766655443323678888888764311 1245688
Q ss_pred EEeccccceeccCCCChH-----------HHHHHHHHHHHhcCCCcEEEEEE
Q 026558 117 VVDKGTLDSLLCGSNSRQ-----------NATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 117 I~~~~~l~~~~~~~~~~~-----------~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
++........ ......+ ....+++.+.+.++++|.+++..
T Consensus 85 ii~~ag~~~~-~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 85 LVVTVGGYVE-DTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred EEEcCCCcCC-CchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 8776432111 0000111 12234566666777888877765
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.36 Score=41.35 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=32.7
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHH
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMM 87 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~ 87 (237)
..++|+|+|.|.++..+.-.....|.+||-|....+.|+
T Consensus 155 ~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred CeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHH
Confidence 389999999999999987665459999999977766655
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.17 Score=43.85 Aligned_cols=76 Identities=14% Similarity=0.204 Sum_probs=59.4
Q ss_pred eecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CC-CcEEEEcccc
Q 026558 29 WYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RP-QLKYIKMDVR 104 (237)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~-~~~~~~~d~~ 104 (237)
|..+....+..+.....++. .|.|+.||-|-+...++..+ +.+++-|.+++++++.+.+++- .+ +++.+..|+.
T Consensus 232 WnsRL~~Eherlsg~fk~ge-vv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~ 309 (495)
T KOG2078|consen 232 WNSRLSHEHERLSGLFKPGE-VVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAK 309 (495)
T ss_pred eeccchhHHHHHhhccCCcc-hhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccchhheeeecccHH
Confidence 55455555667777666665 99999999999999999998 5999999999999999999852 12 4677776765
Q ss_pred cc
Q 026558 105 QM 106 (237)
Q Consensus 105 ~~ 106 (237)
.+
T Consensus 310 ~F 311 (495)
T KOG2078|consen 310 DF 311 (495)
T ss_pred HH
Confidence 43
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.32 Score=42.98 Aligned_cols=108 Identities=16% Similarity=0.151 Sum_probs=73.2
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC--CCCcEEEEccccccc----c--ccCCCccEEEe
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMD----E--FQTGSFDSVVD 119 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~----~--~~~~~fD~I~~ 119 (237)
+.+|-+|-|.|.+...+.-.. ..++++++++|++++.|...+.- ..+..+...|..+.. . -.+..||+++.
T Consensus 297 ~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~ 376 (482)
T KOG2352|consen 297 GKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLMV 376 (482)
T ss_pred CcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEEE
Confidence 389999999999998886654 46999999999999999998731 123344444443221 0 24678999987
Q ss_pred cc---ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 120 KG---TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 120 ~~---~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.- -.|.+-|. ++.-....++..+..+|.|.|.+++.-
T Consensus 377 dvds~d~~g~~~p-p~~fva~~~l~~~k~~l~p~g~f~inl 416 (482)
T KOG2352|consen 377 DVDSKDSHGMQCP-PPAFVAQVALQPVKMILPPRGMFIINL 416 (482)
T ss_pred ECCCCCcccCcCC-chHHHHHHHHHHHhhccCccceEEEEE
Confidence 41 12222122 223345678999999999999998754
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.92 Score=39.39 Aligned_cols=71 Identities=18% Similarity=0.368 Sum_probs=50.1
Q ss_pred cEEEEccCC-chhHHH-HHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc--cCCCccEEEeccc
Q 026558 50 RILIVGCGN-SAFSEG-MVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF--QTGSFDSVVDKGT 122 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~-~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~--~~~~fD~I~~~~~ 122 (237)
+||-||||. |+.... +++.+..+|+..|.|.+..+.+..... .+++..+.|+.+.+.. .-..+|+|++..+
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~--~~v~~~~vD~~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG--GKVEALQVDAADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc--ccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence 799999966 444433 355553599999999988888877653 2788999999876421 1244599998654
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.55 Score=41.32 Aligned_cols=88 Identities=10% Similarity=0.123 Sum_probs=54.4
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|+-+|+|. |......++....+|+.+|+++.....+... .+++ .+..+. -...|+|+..-.
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~-----G~~v--~~l~ea----l~~aDVVI~aTG----- 276 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD-----GFRV--MTMEEA----AELGDIFVTATG----- 276 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc-----CCEe--cCHHHH----HhCCCEEEECCC-----
Confidence 3899999987 5544444444334999999998665444332 1222 122222 136899987421
Q ss_pred cCCCChHHHHHHHH-HHHHhcCCCcEEEEEEcCC
Q 026558 128 CGSNSRQNATQMLK-EVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 128 ~~~~~~~~~~~~l~-~~~~~L~pgG~l~~~~~~~ 160 (237)
...++. .....+++|++++......
T Consensus 277 --------~~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 277 --------NKDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred --------CHHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 123454 6889999999998876544
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=91.72 E-value=1.1 Score=37.05 Aligned_cols=84 Identities=15% Similarity=0.113 Sum_probs=54.4
Q ss_pred cEEEEccCC--chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 50 ~iLdlG~G~--G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
+|.=+|+|. |.++..+.+.++ +|+++|.++..++.+.+.. .+.....+. . .-...|+|+..-+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g----~~~~~~~~~---~--~~~~aDlVilavp~---- 67 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERG----LVDEASTDL---S--LLKDCDLVILALPI---- 67 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCC----CcccccCCH---h--HhcCCCEEEEcCCH----
Confidence 466788887 456666777776 8999999998888877652 111111111 1 12457999886443
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEE
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVY 153 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l 153 (237)
....++++++...++++.++
T Consensus 68 ------~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 68 ------GLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred ------HHHHHHHHHHHHhCCCCcEE
Confidence 44567788888888877544
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.63 E-value=1.4 Score=37.57 Aligned_cols=92 Identities=14% Similarity=0.124 Sum_probs=57.8
Q ss_pred CcEEEEcc-C-CchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc----cccc-cccccCCCccEEEecc
Q 026558 49 QRILIVGC-G-NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM----DVRQ-MDEFQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~-G-~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~----d~~~-~~~~~~~~fD~I~~~~ 121 (237)
.+||-.|+ | .|..+..+++....++++++.+++..+.+++.+.. ..++.. +..+ ......+.+|+|+...
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa---~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~v 236 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGF---DEAFNYKEEPDLDAALKRYFPEGIDIYFDNV 236 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCC---CEEEECCCcccHHHHHHHHCCCCcEEEEECC
Confidence 38888887 3 47777777776545899999999888887744421 112211 1111 1111234689888631
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
. ...+..+.++|+++|++++.-
T Consensus 237 G--------------~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 237 G--------------GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred C--------------HHHHHHHHHHhccCCEEEEEC
Confidence 1 135778899999999988654
|
|
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.44 Score=37.85 Aligned_cols=57 Identities=14% Similarity=0.250 Sum_probs=45.0
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCC-CcEEEEccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRP-QLKYIKMDVRQ 105 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~ 105 (237)
.-|++||.|.|.++..+.+.+.++...+++++..+.-.+-..+..+ ...+...|+..
T Consensus 52 ~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 52 AYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAPGKLRIHHGDVLR 109 (326)
T ss_pred ceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCCcceEEeccccce
Confidence 3799999999999999999997799999999888777665554323 56667777754
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.13 Score=45.34 Aligned_cols=97 Identities=12% Similarity=0.143 Sum_probs=70.8
Q ss_pred cEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccc---cccCCCccEEEecc
Q 026558 50 RILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMD---EFQTGSFDSVVDKG 121 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~---~~~~~~fD~I~~~~ 121 (237)
+|||.=|++|.-++..+..- ..++++-|.++.+++..+++.+.. .-++....|+..+- .-....||+|=.+
T Consensus 112 ~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvIDLD- 190 (525)
T KOG1253|consen 112 RVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVIDLD- 190 (525)
T ss_pred hHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEecC-
Confidence 89999999998877776652 448999999999999999988532 23455666664421 0124789999554
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+ -..-.+|+.+.+.++.||.+.+..
T Consensus 191 ---Py-------Gs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 191 ---PY-------GSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ---CC-------CCccHHHHHHHHHhhcCCEEEEEe
Confidence 22 334668999999999999998743
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=91.40 E-value=1.8 Score=37.39 Aligned_cols=93 Identities=18% Similarity=0.258 Sum_probs=56.5
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEcc-----ccc-cccccCCCccEEEec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKMD-----VRQ-MDEFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d-----~~~-~~~~~~~~fD~I~~~ 120 (237)
.+||-+|+|. |..+..+++.... .++++|.+++.++.+++.-. ..++... ..+ ......+.+|+|+..
T Consensus 200 ~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga----~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~ 275 (381)
T PLN02740 200 SSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI----TDFINPKDSDKPVHERIREMTGGGVDYSFEC 275 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC----cEEEecccccchHHHHHHHHhCCCCCEEEEC
Confidence 3899898865 5666666665434 69999999999998865321 1122111 111 111122369999874
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCC-cEEEEEEc
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTY 158 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 158 (237)
.. ....+....+.+++| |++++...
T Consensus 276 ~G-------------~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 276 AG-------------NVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred CC-------------ChHHHHHHHHhhhcCCCEEEEEcc
Confidence 22 123567777888887 98877553
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.33 E-value=2.1 Score=35.64 Aligned_cols=98 Identities=20% Similarity=0.327 Sum_probs=64.3
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-------CC------------CcEEEEcccccccc
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-------RP------------QLKYIKMDVRQMDE 108 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-------~~------------~~~~~~~d~~~~~~ 108 (237)
+|--||+|+ | .+...++..|+ .|+..|.+++.++.+++++.. .. +++ ...|. .
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~---~- 80 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDL---G- 80 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCH---H-
Confidence 788899987 3 45556677776 999999999999987766421 01 111 11122 1
Q ss_pred ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhc-CCCcEEEEEEcCCch
Q 026558 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVL-KDKGVYILVTYGAPI 162 (237)
Q Consensus 109 ~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L-~pgG~l~~~~~~~~~ 162 (237)
.-...|+|+.. +.+ ..+....++..+-+.+ +|+.++...+..-+.
T Consensus 81 -~~~~~d~ViEa-v~E-------~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~ 126 (286)
T PRK07819 81 -DFADRQLVIEA-VVE-------DEAVKTEIFAELDKVVTDPDAVLASNTSSIPI 126 (286)
T ss_pred -HhCCCCEEEEe-ccc-------CHHHHHHHHHHHHHhhCCCCcEEEECCCCCCH
Confidence 12457888875 333 3377788899999998 788777666654443
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.29 E-value=1.4 Score=38.85 Aligned_cols=107 Identities=14% Similarity=0.083 Sum_probs=67.5
Q ss_pred cEEEEccCCchhHHHHHH--cC-CCeEEEEeCCHHHHHHHHHHcCCC-CCcEEEEcc-c-c--ccccccCCCccEEEecc
Q 026558 50 RILIVGCGNSAFSEGMVD--DG-YEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMD-V-R--QMDEFQTGSFDSVVDKG 121 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~--~~-~~~~~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d-~-~--~~~~~~~~~fD~I~~~~ 121 (237)
.++|+|.|.|...-.+.. .. ...+..||.|..|......+..+. .+-....-. . . .+|......||+|++.+
T Consensus 203 ~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ah 282 (491)
T KOG2539|consen 203 LLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVICAH 282 (491)
T ss_pred HHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEeee
Confidence 788898887655444433 33 348999999999999988887541 122222112 1 1 12323456799999999
Q ss_pred ccceeccCCCChHHHHHHHHHH-HHhcCCCcEEEEEEcCC
Q 026558 122 TLDSLLCGSNSRQNATQMLKEV-WRVLKDKGVYILVTYGA 160 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~-~~~L~pgG~l~~~~~~~ 160 (237)
.++++. +........+.. .+..++|+.++++.-+.
T Consensus 283 ~l~~~~----s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 283 KLHELG----SKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred eeeccC----CchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 998872 333444444444 55667888888876443
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.25 E-value=5.9 Score=31.89 Aligned_cols=71 Identities=18% Similarity=0.326 Sum_probs=47.8
Q ss_pred cEEEEccCCchhHHH----HHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc--------c--CCCcc
Q 026558 50 RILIVGCGNSAFSEG----MVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF--------Q--TGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~----~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~--------~--~~~fD 115 (237)
++|-.|++ |.++.. +++.|. +++.++.++..++.+.+...+ .++.++.+|+.+.... . .+++|
T Consensus 3 ~vlItGas-g~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id 79 (260)
T PRK08267 3 SIFITGAA-SGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELGA-GNAWTGALDVTDRAAWDAALADFAAATGGRLD 79 (260)
T ss_pred EEEEeCCC-chHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcC-CceEEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 57888864 444443 455565 899999998887777665532 4678889999764321 0 35789
Q ss_pred EEEecccc
Q 026558 116 SVVDKGTL 123 (237)
Q Consensus 116 ~I~~~~~l 123 (237)
+|+.+...
T Consensus 80 ~vi~~ag~ 87 (260)
T PRK08267 80 VLFNNAGI 87 (260)
T ss_pred EEEECCCC
Confidence 99987654
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.81 E-value=4 Score=32.99 Aligned_cols=73 Identities=15% Similarity=0.346 Sum_probs=48.2
Q ss_pred cEEEEccCCc---hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc--------cCCCccEEE
Q 026558 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF--------QTGSFDSVV 118 (237)
Q Consensus 50 ~iLdlG~G~G---~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~--------~~~~fD~I~ 118 (237)
+||-.|++.| .+...++++|. ++++++.++..++.....+....++.++.+|+.+.... ..+..|.++
T Consensus 7 ~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~lv 85 (263)
T PRK09072 7 RVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINVLI 85 (263)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 7888886543 23334556665 89999999887777665543334678888898775321 125689999
Q ss_pred ecccc
Q 026558 119 DKGTL 123 (237)
Q Consensus 119 ~~~~l 123 (237)
.+...
T Consensus 86 ~~ag~ 90 (263)
T PRK09072 86 NNAGV 90 (263)
T ss_pred ECCCC
Confidence 87544
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=90.79 E-value=2.4 Score=33.95 Aligned_cols=93 Identities=18% Similarity=0.258 Sum_probs=58.2
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc----cccCCCccEEEecccc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----EFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~----~~~~~~fD~I~~~~~l 123 (237)
.+||..|+|. |..+..+++....++++++.++...+.+++.... .++...-.... ....+.+|+++....-
T Consensus 136 ~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~ 211 (271)
T cd05188 136 DTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGAD----HVIDYKEEDLEEELRLTGGGGADVVIDAVGG 211 (271)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCc----eeccCCcCCHHHHHHHhcCCCCCEEEECCCC
Confidence 4899999886 6666666665445999999999888887654211 11111000110 0124679999864221
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
...+..+.+.|+++|.++....
T Consensus 212 -------------~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 212 -------------PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred -------------HHHHHHHHHhcccCCEEEEEcc
Confidence 1356778889999999987653
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.75 E-value=1.8 Score=35.90 Aligned_cols=94 Identities=16% Similarity=0.280 Sum_probs=58.4
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC----------C----------CCcEEEEccccccc
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN----------R----------PQLKYIKMDVRQMD 107 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~----------~----------~~~~~~~~d~~~~~ 107 (237)
+|.-||+|. | .++..++..++ +|+.+|.+++.++.++++... . .++.+ ..|..+.
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a- 81 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEA- 81 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHH-
Confidence 688889887 3 34445566666 999999999998888765310 0 01111 1122211
Q ss_pred cccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 108 EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 108 ~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
-...|+|+..-+ .. .+....+++++...++++.++...+
T Consensus 82 ---~~~aDlVieavp-e~-------~~~k~~~~~~l~~~~~~~~ii~snt 120 (287)
T PRK08293 82 ---VKDADLVIEAVP-ED-------PEIKGDFYEELAKVAPEKTIFATNS 120 (287)
T ss_pred ---hcCCCEEEEecc-CC-------HHHHHHHHHHHHhhCCCCCEEEECc
Confidence 245788887532 22 2567788899988888887664443
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.67 E-value=6.5 Score=32.59 Aligned_cols=72 Identities=15% Similarity=0.325 Sum_probs=46.4
Q ss_pred cEEEEccCCchhHHH----HHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccE
Q 026558 50 RILIVGCGNSAFSEG----MVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~----~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (237)
+||-.|++. .++.. +++.|. +++.++.++..++...+.+.....+..+.+|+.+.... ..+..|+
T Consensus 11 ~vlItGas~-gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~ 88 (296)
T PRK05872 11 VVVVTGAAR-GIGAELARRLHARGA-KLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGIDV 88 (296)
T ss_pred EEEEECCCc-hHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 788888544 44444 445565 89999999888777666654323445556888764311 1257899
Q ss_pred EEecccc
Q 026558 117 VVDKGTL 123 (237)
Q Consensus 117 I~~~~~l 123 (237)
++.+...
T Consensus 89 vI~nAG~ 95 (296)
T PRK05872 89 VVANAGI 95 (296)
T ss_pred EEECCCc
Confidence 9998654
|
|
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=90.62 E-value=4.2 Score=36.70 Aligned_cols=109 Identities=13% Similarity=0.202 Sum_probs=68.9
Q ss_pred CcEEEEccCCchhHHHHHHc---C--CCeEEEEeCCHHHHHHHHHHc--CCC--CCcEEEEccccccccc-cCCCccEEE
Q 026558 49 QRILIVGCGNSAFSEGMVDD---G--YEDVVNVDISSVVIEAMMKKY--SNR--PQLKYIKMDVRQMDEF-QTGSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~---~--~~~~~~vD~s~~~~~~a~~~~--~~~--~~~~~~~~d~~~~~~~-~~~~fD~I~ 118 (237)
..|.|+.||+|.+.....+. + ...++|.+..+.+...++.+. .+. .......+|....+.+ ....||+|+
T Consensus 219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~v~ 298 (501)
T TIGR00497 219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEVVV 298 (501)
T ss_pred CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCEEe
Confidence 48999999999988765432 2 237999999999999999874 221 2233334444332222 245699999
Q ss_pred eccccceecc-C-C----------------CChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 119 DKGTLDSLLC-G-S----------------NSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 119 ~~~~l~~~~~-~-~----------------~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
++.++..... + . +-...-..++..+..+|++||+..++-
T Consensus 299 ~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~ 355 (501)
T TIGR00497 299 SNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC 355 (501)
T ss_pred ecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence 9876543110 0 0 001123457888999999999865543
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.47 E-value=2.3 Score=35.36 Aligned_cols=93 Identities=18% Similarity=0.273 Sum_probs=57.8
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC----------C------------CcEEEEccccc
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR----------P------------QLKYIKMDVRQ 105 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~----------~------------~~~~~~~d~~~ 105 (237)
+|.-+|+|. | .++..++..|+ +|+.+|.+++.++.+++++... . ++.+ ..|.
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~-- 80 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STSY-- 80 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCCH--
Confidence 688899987 4 45555666776 8999999999998766543210 0 0111 1111
Q ss_pred cccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 106 MDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 106 ~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
. .-...|+|+..-+ . ..+....+++++.+.++++.+++..+
T Consensus 81 -~--~~~~aDlVieav~-e-------~~~~k~~~~~~l~~~~~~~~il~S~t 121 (291)
T PRK06035 81 -E--SLSDADFIVEAVP-E-------KLDLKRKVFAELERNVSPETIIASNT 121 (291)
T ss_pred -H--HhCCCCEEEEcCc-C-------cHHHHHHHHHHHHhhCCCCeEEEEcC
Confidence 1 1245788887532 2 22456788999999998887665433
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.41 E-value=1.2 Score=36.93 Aligned_cols=95 Identities=16% Similarity=0.256 Sum_probs=58.3
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-------CC------------CcEEEEcccccccc
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-------RP------------QLKYIKMDVRQMDE 108 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-------~~------------~~~~~~~d~~~~~~ 108 (237)
+|.-||+|. | .++..+++.++ +|+.+|.+++.++.+.++... .. ++.+ ..+..+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~--- 77 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKA--- 77 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHH---
Confidence 678888876 3 44455666776 899999999999987754310 00 1111 111111
Q ss_pred ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 109 ~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.-...|+|+..-+ . +.+....++.++.+.++++.++...+.
T Consensus 78 -~~~~aD~Vi~avp-e-------~~~~k~~~~~~l~~~~~~~~il~~~tS 118 (288)
T PRK09260 78 -AVADADLVIEAVP-E-------KLELKKAVFETADAHAPAECYIATNTS 118 (288)
T ss_pred -hhcCCCEEEEecc-C-------CHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 1245798887532 1 224456788888899998877655443
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.24 E-value=5.4 Score=32.26 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=44.6
Q ss_pred cEEEEccCCchhHHH----HHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccE
Q 026558 50 RILIVGCGNSAFSEG----MVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~----~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (237)
++|-.|++ |.++.. +++.|. +++.++.++..++...+... .++.++.+|+.+.... .-+..|+
T Consensus 8 ~vlItGas-~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~ 83 (261)
T PRK08265 8 VAIVTGGA-TLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLG--ERARFIATDITDDAAIERAVATVVARFGRVDI 83 (261)
T ss_pred EEEEECCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC--CeeEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 78888854 444444 455565 89999998876655554442 3577888899764321 1246899
Q ss_pred EEeccc
Q 026558 117 VVDKGT 122 (237)
Q Consensus 117 I~~~~~ 122 (237)
++.+..
T Consensus 84 lv~~ag 89 (261)
T PRK08265 84 LVNLAC 89 (261)
T ss_pred EEECCC
Confidence 988754
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=90.12 E-value=4.1 Score=30.96 Aligned_cols=107 Identities=13% Similarity=0.144 Sum_probs=61.0
Q ss_pred EccCCchhHHHHHHcC--CCeEEEEeCC--HHHHHHHH---HHcC--CCCCcEE-EEcccccccc---ccCCCccEEEec
Q 026558 54 VGCGNSAFSEGMVDDG--YEDVVNVDIS--SVVIEAMM---KKYS--NRPQLKY-IKMDVRQMDE---FQTGSFDSVVDK 120 (237)
Q Consensus 54 lG~G~G~~~~~~~~~~--~~~~~~vD~s--~~~~~~a~---~~~~--~~~~~~~-~~~d~~~~~~---~~~~~fD~I~~~ 120 (237)
+|=|.=+++..+++.. ...++++-+. ++..+.-. +++. ...++.+ .-.|+.++.. .....||.|+-+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 5556666777777763 3366665443 33332221 2221 1123433 4557776653 246889999998
Q ss_pred cccceeccC--C----CChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 121 GTLDSLLCG--S----NSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 121 ~~l~~~~~~--~----~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.+----... . ........+++.+..+|+++|.+.+.....
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 763220000 0 113456679999999999999998876444
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=90.04 E-value=1.2 Score=38.50 Aligned_cols=100 Identities=11% Similarity=0.136 Sum_probs=56.4
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|+-+|+|. |......+.....+++.+|.+++.++.+...+.. .+.....+..++... -..+|+|+........
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~--~v~~~~~~~~~l~~~-l~~aDvVI~a~~~~g~- 243 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG--RIHTRYSNAYEIEDA-VKRADLLIGAVLIPGA- 243 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc--eeEeccCCHHHHHHH-HccCCEEEEccccCCC-
Confidence 3799998875 5555555554334899999999887777665421 111111111122211 2468999975322100
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
..+.-+-+++.+.++|+++++-+..
T Consensus 244 ------~~p~lit~~~l~~mk~g~vIvDva~ 268 (370)
T TIGR00518 244 ------KAPKLVSNSLVAQMKPGAVIVDVAI 268 (370)
T ss_pred ------CCCcCcCHHHHhcCCCCCEEEEEec
Confidence 1111134666777899988776553
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.96 E-value=1.6 Score=36.28 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=59.3
Q ss_pred cEEEEccCC--chhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 50 RILIVGCGN--SAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 50 ~iLdlG~G~--G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
+|+=+|.|- |++...+.+.++ ..+++.|.+...+..+.+.- +.....+.... ......|+|+..-++
T Consensus 5 ~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg-----v~d~~~~~~~~--~~~~~aD~VivavPi--- 74 (279)
T COG0287 5 KVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG-----VIDELTVAGLA--EAAAEADLVIVAVPI--- 74 (279)
T ss_pred EEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC-----cccccccchhh--hhcccCCEEEEeccH---
Confidence 677788776 566666777774 36899999888877776552 11111111101 124568999886443
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.....+++++...|++|..+.=++
T Consensus 75 -------~~~~~~l~~l~~~l~~g~iv~Dv~ 98 (279)
T COG0287 75 -------EATEEVLKELAPHLKKGAIVTDVG 98 (279)
T ss_pred -------HHHHHHHHHhcccCCCCCEEEecc
Confidence 566889999999999997765444
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.95 E-value=4.1 Score=34.51 Aligned_cols=92 Identities=14% Similarity=0.209 Sum_probs=54.4
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEc---ccccccc-ccCCCcc-EEEecc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQMDE-FQTGSFD-SVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~---d~~~~~~-~~~~~fD-~I~~~~ 121 (237)
.+||-.|+|. |..+..+++.... .+++++.+++.++.+++.-. ..++.. +...... .....+| +|+..
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga----~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~- 236 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGA----MQTFNSREMSAPQIQSVLRELRFDQLILET- 236 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC----ceEecCcccCHHHHHHHhcCCCCCeEEEEC-
Confidence 3888888765 5666666665433 47899999998888765321 111111 1111110 1234577 65542
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
. + ....+....+.|++||++++.-
T Consensus 237 ----~-----G---~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 237 ----A-----G---VPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred ----C-----C---CHHHHHHHHHHhhcCCEEEEEc
Confidence 1 1 1346777889999999988764
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=89.91 E-value=1.5 Score=34.05 Aligned_cols=108 Identities=19% Similarity=0.256 Sum_probs=58.3
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--CC-------------CcEEEEccccccccccCC
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RP-------------QLKYIKMDVRQMDEFQTG 112 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~~-------------~~~~~~~d~~~~~~~~~~ 112 (237)
+|--+|.|. | ..+..+++.|+ +|+|+|++++.++..++-... .+ ++.+ ..|.... -.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~-t~~~~~a----i~ 75 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA-TTDIEEA----IK 75 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE-ESEHHHH----HH
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh-hhhhhhh----hh
Confidence 466677776 3 34455677887 999999999988887654321 01 1111 1122221 13
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchh
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 163 (237)
..|+++..-..-.-..+..+.....+.++.+...++++-.+++.+-.+|..
T Consensus 76 ~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGt 126 (185)
T PF03721_consen 76 DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGT 126 (185)
T ss_dssp H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTH
T ss_pred ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEee
Confidence 467777642211111111234678899999999999977777765555544
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.90 E-value=2.5 Score=35.81 Aligned_cols=96 Identities=15% Similarity=0.240 Sum_probs=61.3
Q ss_pred CcEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-------C--------CCcEEEEccccccccccC
Q 026558 49 QRILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-------R--------PQLKYIKMDVRQMDEFQT 111 (237)
Q Consensus 49 ~~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-------~--------~~~~~~~~d~~~~~~~~~ 111 (237)
.+|--||+|+ | .++..++..|+ +|+..|.+++.++.++..+.. . .++.+. .++.+ .-
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~----av 81 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA----CV 81 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH----Hh
Confidence 3788999986 4 45555677776 999999999988776654310 0 011111 11111 12
Q ss_pred CCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
...|+|+-. +.+. .+....+++++.+.++|+.++...|.
T Consensus 82 ~~aDlViEa-vpE~-------l~vK~~lf~~l~~~~~~~aIlaSnTS 120 (321)
T PRK07066 82 ADADFIQES-APER-------EALKLELHERISRAAKPDAIIASSTS 120 (321)
T ss_pred cCCCEEEEC-CcCC-------HHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 467888875 3333 37788899999999999985544443
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=89.65 E-value=2.4 Score=35.73 Aligned_cols=91 Identities=18% Similarity=0.310 Sum_probs=55.6
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEcc---ccccccccCCCccEEEecccc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKMD---VRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d---~~~~~~~~~~~fD~I~~~~~l 123 (237)
.+||-.|||. |..+..+++.... .+++++.++...+.+++... -.++..+ ..... ...+.+|+|+.....
T Consensus 167 ~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~----~~vi~~~~~~~~~~~-~~~~~vd~vld~~g~ 241 (339)
T cd08232 167 KRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGA----DETVNLARDPLAAYA-ADKGDFDVVFEASGA 241 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCC----CEEEcCCchhhhhhh-ccCCCccEEEECCCC
Confidence 3788888765 5666666665433 78999999888886665321 1222111 11121 122458999874221
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...++.+.+.|+++|+++...
T Consensus 242 -------------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 242 -------------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred -------------HHHHHHHHHHHhcCCEEEEEe
Confidence 234678889999999998764
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=89.38 E-value=2.8 Score=35.90 Aligned_cols=92 Identities=17% Similarity=0.223 Sum_probs=52.4
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEE-ccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK-MDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~-~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+||-.|+|. |..+..+++....++++++.++.....+.+.+.. ..++. .+....... .+.+|+|+....
T Consensus 185 ~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga---~~vi~~~~~~~~~~~-~~~~D~vid~~g---- 256 (360)
T PLN02586 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGA---DSFLVSTDPEKMKAA-IGTMDYIIDTVS---- 256 (360)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCC---cEEEcCCCHHHHHhh-cCCCCEEEECCC----
Confidence 3777788865 6666667766445788888876554433333311 11111 111111111 125888886321
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
....++++.+.|+++|+++...
T Consensus 257 ---------~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 257 ---------AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred ---------CHHHHHHHHHHhcCCcEEEEeC
Confidence 1235777889999999998764
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=89.29 E-value=5.5 Score=34.82 Aligned_cols=94 Identities=14% Similarity=0.224 Sum_probs=56.1
Q ss_pred cEEEEc-cCC-chhHHHHHHcC---CCeEEEEeCCHHHHHHHHHHcCCCC---CcEEEEcccc---ccc----cc-cCCC
Q 026558 50 RILIVG-CGN-SAFSEGMVDDG---YEDVVNVDISSVVIEAMMKKYSNRP---QLKYIKMDVR---QMD----EF-QTGS 113 (237)
Q Consensus 50 ~iLdlG-~G~-G~~~~~~~~~~---~~~~~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~---~~~----~~-~~~~ 113 (237)
+||-+| +|. |..+..+++.. ..+++++|.++..++.+++...... .......|.. ++. .. ....
T Consensus 178 ~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g~g 257 (410)
T cd08238 178 NTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTGGQG 257 (410)
T ss_pred EEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhCCCC
Confidence 788887 454 77777777752 2379999999999999988632100 1121111211 111 11 2346
Q ss_pred ccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 114 fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
+|+|+.... ....+....+.++++|.+++.
T Consensus 258 ~D~vid~~g-------------~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 258 FDDVFVFVP-------------VPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred CCEEEEcCC-------------CHHHHHHHHHHhccCCeEEEE
Confidence 898886321 124577788999988876654
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.11 E-value=2.9 Score=35.05 Aligned_cols=89 Identities=15% Similarity=0.121 Sum_probs=54.6
Q ss_pred cEEEEccCC-c-hhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
+|.=||+|. | .++..+.+.+. .+++++|.++..++.+++.- -......+..+. -...|+|+..-+.
T Consensus 8 ~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g----~~~~~~~~~~~~----~~~aDvViiavp~--- 76 (307)
T PRK07502 8 RVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELG----LGDRVTTSAAEA----VKGADLVILCVPV--- 76 (307)
T ss_pred EEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCC----CCceecCCHHHH----hcCCCEEEECCCH---
Confidence 788899887 3 34455555553 38999999998887776531 011111121111 2457999886432
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
.....+++.+...++++..++..
T Consensus 77 -------~~~~~v~~~l~~~l~~~~iv~dv 99 (307)
T PRK07502 77 -------GASGAVAAEIAPHLKPGAIVTDV 99 (307)
T ss_pred -------HHHHHHHHHHHhhCCCCCEEEeC
Confidence 33466777788888888766543
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=89.10 E-value=3 Score=35.44 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=31.5
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKK 89 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~ 89 (237)
.+||-+|+|. |..+..+++....+++++|.+++.++.+++.
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~ 209 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGF 209 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh
Confidence 3899999865 6666666666444899999999998888654
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.07 E-value=1.9 Score=35.34 Aligned_cols=66 Identities=15% Similarity=0.178 Sum_probs=48.5
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccc
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~ 122 (237)
..+|+|+-.|.++..+.+++- .|+++|.-+ |.+..- ..+.++.+..|-..+. ......|-.+|+.+
T Consensus 214 ~avDLGAcPGGWTyqLVkr~m-~V~aVDng~-ma~sL~----dtg~v~h~r~DGfk~~-P~r~~idWmVCDmV 279 (358)
T COG2933 214 WAVDLGACPGGWTYQLVKRNM-RVYAVDNGP-MAQSLM----DTGQVTHLREDGFKFR-PTRSNIDWMVCDMV 279 (358)
T ss_pred eeeecccCCCccchhhhhcce-EEEEeccch-hhhhhh----cccceeeeeccCcccc-cCCCCCceEEeehh
Confidence 899999999999999999976 899999754 222222 2246777777777775 23567888888755
|
|
| >PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes | Back alignment and domain information |
|---|
Probab=89.07 E-value=0.77 Score=37.25 Aligned_cols=57 Identities=19% Similarity=0.173 Sum_probs=39.1
Q ss_pred CcChHHHHHhhCCC-CCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHc
Q 026558 33 YPSLAPLIKLYVPS-HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKY 90 (237)
Q Consensus 33 ~~~~~~~l~~~~~~-~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~ 90 (237)
-..+...|...++. ...+++|+-||+|.++..+...+. .++.-|+++..+...+..+
T Consensus 5 K~~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~-~vi~ND~~~~l~~~~~~~l 62 (260)
T PF02086_consen 5 KRKLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGK-RVIINDINPDLINFWKAVL 62 (260)
T ss_dssp SGGGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SS-EEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEecchhHHHHHhccccc-ceeeeechHHHHHHHHHHH
Confidence 34456667777775 445999999999999988876554 8999999998888777443
|
There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B. |
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=89.07 E-value=1.7 Score=33.54 Aligned_cols=102 Identities=15% Similarity=0.281 Sum_probs=60.5
Q ss_pred hHHHHHhhCC--CCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCC-----CCcEEEEccccccc
Q 026558 36 LAPLIKLYVP--SHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR-----PQLKYIKMDVRQMD 107 (237)
Q Consensus 36 ~~~~l~~~~~--~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~ 107 (237)
+.+.+...+. ++...|+.||||-=.....+.... ...++-+|. |++++.-++.+... .+.+++.+|+.+..
T Consensus 65 iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~ 143 (183)
T PF04072_consen 65 IDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDS 143 (183)
T ss_dssp HHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHH
T ss_pred HHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchh
Confidence 3444555552 232389999999987777777653 336666665 66666666555321 23568999997632
Q ss_pred --------cccCCCccEEEeccccceeccCCCChHHHHHHHHHH
Q 026558 108 --------EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEV 143 (237)
Q Consensus 108 --------~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~ 143 (237)
.+.....-++++-+++.++ +++....+|+.+
T Consensus 144 ~~~~L~~~g~~~~~ptl~i~Egvl~Yl-----~~~~~~~ll~~i 182 (183)
T PF04072_consen 144 WIDALPKAGFDPDRPTLFIAEGVLMYL-----SPEQVDALLRAI 182 (183)
T ss_dssp HHHHHHHCTT-TTSEEEEEEESSGGGS------HHHHHHHHHHH
T ss_pred hHHHHHHhCCCCCCCeEEEEcchhhcC-----CHHHHHHHHHHh
Confidence 1334556678888888888 777777777665
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=89.02 E-value=3.1 Score=35.96 Aligned_cols=92 Identities=16% Similarity=0.211 Sum_probs=54.8
Q ss_pred CcEEEEccCC-chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc-----cccc-cccccCCCccEEEec
Q 026558 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM-----DVRQ-MDEFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~-----d~~~-~~~~~~~~fD~I~~~ 120 (237)
.+||-.|+|. |..+..+++. |...++++|.++...+.+++.-. . .++.. +... +.....+.+|+|+..
T Consensus 195 ~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa--~--~~i~~~~~~~~~~~~v~~~~~~g~d~vid~ 270 (378)
T PLN02827 195 SSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGV--T--DFINPNDLSEPIQQVIKRMTGGGADYSFEC 270 (378)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC--c--EEEcccccchHHHHHHHHHhCCCCCEEEEC
Confidence 3888888765 5565666655 33368899999988888865421 1 11111 1111 111122368999864
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCC-cEEEEEE
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVT 157 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~ 157 (237)
.. . ...+....+.+++| |++++.-
T Consensus 271 ~G--~-----------~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 271 VG--D-----------TGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CC--C-----------hHHHHHHHHhhccCCCEEEEEC
Confidence 21 1 22466778889998 9997754
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=88.92 E-value=1.7 Score=36.18 Aligned_cols=71 Identities=15% Similarity=0.300 Sum_probs=44.0
Q ss_pred CCchhHHHHHHc----CCCeEEEEeCCHHHHHHHHHHcC---CCCCcEE----EEcccccccc----ccCCCccEEEecc
Q 026558 57 GNSAFSEGMVDD----GYEDVVNVDISSVVIEAMMKKYS---NRPQLKY----IKMDVRQMDE----FQTGSFDSVVDKG 121 (237)
Q Consensus 57 G~G~~~~~~~~~----~~~~~~~vD~s~~~~~~a~~~~~---~~~~~~~----~~~d~~~~~~----~~~~~fD~I~~~~ 121 (237)
|+|+++..++++ ++.+++.+|.++..+-..+..+. ..+++++ +.+|+.+... +....+|+|+-..
T Consensus 6 a~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfHaA 85 (293)
T PF02719_consen 6 AGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFHAA 85 (293)
T ss_dssp TTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE--
T ss_pred cccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEECh
Confidence 788888888765 35689999999999999988883 2235554 4888876431 5567899999998
Q ss_pred ccceec
Q 026558 122 TLDSLL 127 (237)
Q Consensus 122 ~l~~~~ 127 (237)
.+-|+.
T Consensus 86 A~KhVp 91 (293)
T PF02719_consen 86 ALKHVP 91 (293)
T ss_dssp ----HH
T ss_pred hcCCCC
Confidence 887774
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.87 E-value=3.6 Score=38.62 Aligned_cols=106 Identities=19% Similarity=0.258 Sum_probs=62.8
Q ss_pred cEEEEccCCchhHHHH----HHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc----c-----cCCCccE
Q 026558 50 RILIVGCGNSAFSEGM----VDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE----F-----QTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~----~-----~~~~fD~ 116 (237)
+||-.|+ +|.++..+ ++.|. +++++|.++..++.+.+.+....++.++.+|+.+... + .-+.+|+
T Consensus 424 ~vLVTGa-sggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iDv 501 (681)
T PRK08324 424 VALVTGA-AGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVDI 501 (681)
T ss_pred EEEEecC-CCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 7888875 44444443 44555 8999999998877766655332467788888876431 1 1246899
Q ss_pred EEeccccceec-cCCCChHH-----------HHHHHHHHHHhcCC---CcEEEEEE
Q 026558 117 VVDKGTLDSLL-CGSNSRQN-----------ATQMLKEVWRVLKD---KGVYILVT 157 (237)
Q Consensus 117 I~~~~~l~~~~-~~~~~~~~-----------~~~~l~~~~~~L~p---gG~l~~~~ 157 (237)
|+.+....... ....+.+. ...+++.+.+.+++ +|.+++..
T Consensus 502 vI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 502 VVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 99876532110 00001111 33456667777766 57777654
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=88.67 E-value=7.4 Score=36.20 Aligned_cols=94 Identities=18% Similarity=0.241 Sum_probs=60.2
Q ss_pred CcEEEEccCC-chhHHHH-HHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---cCCCccEEEecccc
Q 026558 49 QRILIVGCGN-SAFSEGM-VDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---QTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~-~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---~~~~fD~I~~~~~l 123 (237)
.+|+=+|||. |...... .+.+. .++.+|.+++.++.+++. +..++.+|..+..-+ .-++.|.+++. .
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~L~~agi~~A~~vvv~--~ 472 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKF-----GMKVFYGDATRMDLLESAGAAKAEVLINA--I 472 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhc-----CCeEEEEeCCCHHHHHhcCCCcCCEEEEE--e
Confidence 3788888877 5544333 33444 899999999999988763 467899999876422 23578888763 1
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+ + ......+-...+.+.|+-.++....
T Consensus 473 ~-------d-~~~n~~i~~~ar~~~p~~~iiaRa~ 499 (621)
T PRK03562 473 D-------D-PQTSLQLVELVKEHFPHLQIIARAR 499 (621)
T ss_pred C-------C-HHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 1 1 2223334445555677766666443
|
|
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.48 E-value=8.4 Score=31.33 Aligned_cols=98 Identities=8% Similarity=0.107 Sum_probs=75.4
Q ss_pred EEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc---ccCCCccEEEeccccceecc
Q 026558 52 LIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 52 LdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~I~~~~~l~~~~~ 128 (237)
|..-||+-.+...+.+.. .++.++|+.|.-....++++....++++.++|-..... -+.++=-+|+.+.+++--
T Consensus 93 l~~YpGSP~lA~~llR~q-DRl~l~ELHp~D~~~L~~~f~~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~-- 169 (279)
T COG2961 93 LRYYPGSPLLARQLLREQ-DRLVLTELHPSDAPLLRNNFAGDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELK-- 169 (279)
T ss_pred cccCCCCHHHHHHHcchh-ceeeeeecCccHHHHHHHHhCCCcceEEEecCcHHHHhhhCCCCCcceEEEeCCCcccc--
Confidence 888899988888887775 49999999999999999999887899999999854210 134556788888888755
Q ss_pred CCCChHHHHHHHHHHHHhcC--CCcEEEEEE
Q 026558 129 GSNSRQNATQMLKEVWRVLK--DKGVYILVT 157 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~--pgG~l~~~~ 157 (237)
.+...+++.+...++ ++|++.+..
T Consensus 170 -----~eY~rvv~~l~~~~kRf~~g~yaiWY 195 (279)
T COG2961 170 -----DEYQRVVEALAEAYKRFATGTYAIWY 195 (279)
T ss_pred -----cHHHHHHHHHHHHHHhhcCceEEEEE
Confidence 667777777766665 567776654
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.39 E-value=5.5 Score=34.19 Aligned_cols=93 Identities=12% Similarity=0.179 Sum_probs=56.6
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEE-c----cccc-cccccCCCccEEEec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIK-M----DVRQ-MDEFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~-~----d~~~-~~~~~~~~fD~I~~~ 120 (237)
.+||-.|+|. |..+..+++.... +++++|.+++.++.+++.-.. .++. . +..+ ......+.+|+|+..
T Consensus 187 ~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~----~~i~~~~~~~~~~~~v~~~~~~g~d~vid~ 262 (368)
T TIGR02818 187 DTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGAT----DCVNPNDYDKPIQEVIVEITDGGVDYSFEC 262 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCC----eEEcccccchhHHHHHHHHhCCCCCEEEEC
Confidence 3888888865 6666666766444 799999999999988664211 1111 1 1101 111122368988864
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCC-cEEEEEEc
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTY 158 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 158 (237)
.. ....+....+.++++ |++++...
T Consensus 263 ~G-------------~~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 263 IG-------------NVNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred CC-------------CHHHHHHHHHHhhcCCCeEEEEec
Confidence 21 023567778889886 98887654
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.30 E-value=11 Score=30.55 Aligned_cols=108 Identities=15% Similarity=0.183 Sum_probs=58.4
Q ss_pred CcEEEEccCCc-hhHHH----HHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCc
Q 026558 49 QRILIVGCGNS-AFSEG----MVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSF 114 (237)
Q Consensus 49 ~~iLdlG~G~G-~~~~~----~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~f 114 (237)
+.+|-.|+++| .++.. +++.|. +++.++.++...+.+++.......+.++.+|+.+.... .-+..
T Consensus 11 k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~l 89 (258)
T PRK07533 11 KRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWGRL 89 (258)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcCCC
Confidence 37888887752 44444 445565 88888887644322222211112345677888764311 12578
Q ss_pred cEEEecccccee---cc--CCCChHHHHH-----------HHHHHHHhcCCCcEEEEEE
Q 026558 115 DSVVDKGTLDSL---LC--GSNSRQNATQ-----------MLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 115 D~I~~~~~l~~~---~~--~~~~~~~~~~-----------~l~~~~~~L~pgG~l~~~~ 157 (237)
|+++.+..+... .. ...+.++... +.+.+...|+.+|.++..+
T Consensus 90 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~is 148 (258)
T PRK07533 90 DFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMS 148 (258)
T ss_pred CEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 999987654211 00 0112232222 3466677777778776654
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=88.29 E-value=5.8 Score=32.21 Aligned_cols=90 Identities=20% Similarity=0.246 Sum_probs=55.0
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCe-EEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYED-VVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~-~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+||-.|+|. |..+..+++....+ +++++.+++..+.+++.-.. .. +.... ... .....+|+|+....
T Consensus 99 ~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~-~~--~~~~~-~~~--~~~~~~d~vl~~~~---- 168 (277)
T cd08255 99 ERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPA-DP--VAADT-ADE--IGGRGADVVIEASG---- 168 (277)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCC-cc--ccccc-hhh--hcCCCCCEEEEccC----
Confidence 3788778765 55666666654346 99999999888876654200 11 11000 011 12456899986321
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
....+....+.|+++|.++...
T Consensus 169 ---------~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 169 ---------SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred ---------ChHHHHHHHHHhcCCcEEEEEe
Confidence 0235777889999999998764
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=88.19 E-value=9.6 Score=31.81 Aligned_cols=92 Identities=14% Similarity=0.095 Sum_probs=55.1
Q ss_pred CcEEEEccC-CchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCG-NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G-~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+||-.|+| .|..+..+++....++++++.++..++.+++.- . ..++...-.....-..+.+|+++....
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g-~---~~~~~~~~~~~~~~~~~~~d~vi~~~~----- 234 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLG-A---DEVVDSGAELDEQAAAGGADVILVTVV----- 234 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhC-C---cEEeccCCcchHHhccCCCCEEEECCC-----
Confidence 378888886 466666666654348999999999888875431 1 111111100110001246898886321
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
....+..+.+.|+++|.++...
T Consensus 235 --------~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 --------SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred --------cHHHHHHHHHhcccCCEEEEEC
Confidence 0235677889999999988764
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.13 E-value=4.4 Score=33.44 Aligned_cols=95 Identities=19% Similarity=0.328 Sum_probs=59.4
Q ss_pred cEEEEccCC--chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-------CCC------------CcEEEEcccccccc
Q 026558 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-------NRP------------QLKYIKMDVRQMDE 108 (237)
Q Consensus 50 ~iLdlG~G~--G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-------~~~------------~~~~~~~d~~~~~~ 108 (237)
+|.-+|+|. +.+...++..+. +++++|++++.++.+++++. ... ++.+ ..|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~--- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD--- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH---
Confidence 577888886 456666677776 99999999999876553321 000 1111 122211
Q ss_pred ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 109 ~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
-...|+|+..-. .. ......+++++.+.++|+.++...+.+
T Consensus 80 --~~~aDlVi~av~-e~-------~~~k~~~~~~l~~~~~~~~il~s~ts~ 120 (282)
T PRK05808 80 --LKDADLVIEAAT-EN-------MDLKKKIFAQLDEIAKPEAILATNTSS 120 (282)
T ss_pred --hccCCeeeeccc-cc-------HHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 245798887522 22 245568999999999999877544433
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=88.01 E-value=3 Score=35.14 Aligned_cols=92 Identities=13% Similarity=0.093 Sum_probs=56.7
Q ss_pred CcEEEEcc--CCchhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccc----ccccCCCccEEEecc
Q 026558 49 QRILIVGC--GNSAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM----DEFQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~--G~G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~----~~~~~~~fD~I~~~~ 121 (237)
.+||-.|+ |.|..++.+++.... ++++++.+++..+.+++.+.. . .++..+-.++ .......+|+|+...
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa-~--~vi~~~~~~~~~~i~~~~~~gvd~vid~~ 232 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF-D--AAINYKTDNVAERLRELCPEGVDVYFDNV 232 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC-c--EEEECCCCCHHHHHHHHCCCCceEEEECC
Confidence 38888886 346677777776544 799999999888888775421 1 1221111111 112235699998631
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
. ...+..+.++|+++|+++...
T Consensus 233 g--------------~~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 233 G--------------GEISDTVISQMNENSHIILCG 254 (345)
T ss_pred C--------------cHHHHHHHHHhccCCEEEEEe
Confidence 1 112577889999999998753
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.99 E-value=9.7 Score=30.90 Aligned_cols=72 Identities=13% Similarity=0.185 Sum_probs=47.4
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--CCCcEEEEccccccccc--------cCCCccE
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEF--------QTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~--------~~~~fD~ 116 (237)
++|-.|++.|. +...+++.|. +++.++.++..++.+.+.+.. ..++.++.+|+.+.... .-+..|+
T Consensus 10 ~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~iD~ 88 (263)
T PRK08339 10 LAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEPDI 88 (263)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCCcE
Confidence 77888865542 3344556665 899999998877766655432 23677888898775321 1256899
Q ss_pred EEeccc
Q 026558 117 VVDKGT 122 (237)
Q Consensus 117 I~~~~~ 122 (237)
++.+..
T Consensus 89 lv~nag 94 (263)
T PRK08339 89 FFFSTG 94 (263)
T ss_pred EEECCC
Confidence 887754
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=87.92 E-value=2.3 Score=36.82 Aligned_cols=114 Identities=10% Similarity=0.008 Sum_probs=71.7
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHc----------CC-CCCcEEEEccc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKY----------SN-RPQLKYIKMDV 103 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~----------~~-~~~~~~~~~d~ 103 (237)
+..+.+.+-........|+|.|-|.....++..+ ...-+|+++....-+.+..+. .. ...++.+++++
T Consensus 181 l~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf 260 (419)
T KOG3924|consen 181 LRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSF 260 (419)
T ss_pred HHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccccc
Confidence 3444554433333489999999999988887765 236778887655444443222 11 12466777777
Q ss_pred ccccc--ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 104 RQMDE--FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 104 ~~~~~--~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+... .-....++|+++.+.- +++...+ +.+++.-|++|-+++-..
T Consensus 261 ~~~~~v~eI~~eatvi~vNN~~F-------dp~L~lr-~~eil~~ck~gtrIiS~~ 308 (419)
T KOG3924|consen 261 LDPKRVTEIQTEATVIFVNNVAF-------DPELKLR-SKEILQKCKDGTRIISSK 308 (419)
T ss_pred CCHHHHHHHhhcceEEEEecccC-------CHHHHHh-hHHHHhhCCCcceEeccc
Confidence 65431 2356789999987642 2233333 559999999999987644
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.88 E-value=5.9 Score=33.22 Aligned_cols=95 Identities=11% Similarity=0.092 Sum_probs=57.1
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHH--c--CCCCCcEEEEccccccccccCCCccEEEecccc
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKK--Y--SNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~--~--~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l 123 (237)
+|+-+|+|. | .++..+++.|. .|+.++-+++.++..++. + ................ ...+.+|+|+..-=-
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~--~~~~~~D~viv~vK~ 80 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETA--DAAEPIHRLLLACKA 80 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCc--ccccccCEEEEECCH
Confidence 789999988 4 45666677665 899999987666665543 1 1101111111111111 123578998874211
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+....++.+...+.++..++..-
T Consensus 81 ----------~~~~~al~~l~~~l~~~t~vv~lQ 104 (305)
T PRK05708 81 ----------YDAEPAVASLAHRLAPGAELLLLQ 104 (305)
T ss_pred ----------HhHHHHHHHHHhhCCCCCEEEEEe
Confidence 245678888999999998776654
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=87.87 E-value=2.8 Score=34.25 Aligned_cols=79 Identities=18% Similarity=0.123 Sum_probs=48.9
Q ss_pred HHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHH
Q 026558 62 SEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQML 140 (237)
Q Consensus 62 ~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l 140 (237)
+..+.+.+ ..+++|+|.++..++.|++.- -+.-...+. +. -..+|+|+..-++ .....++
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g----~~~~~~~~~-~~----~~~~DlvvlavP~----------~~~~~~l 62 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALELG----IIDEASTDI-EA----VEDADLVVLAVPV----------SAIEDVL 62 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHTT----SSSEEESHH-HH----GGCCSEEEE-S-H----------HHHHHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHCC----CeeeccCCH-hH----hcCCCEEEEcCCH----------HHHHHHH
Confidence 45666776 349999999999999887662 122222221 11 1356999986544 5668999
Q ss_pred HHHHHhcCCCcEEEEEEcC
Q 026558 141 KEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 141 ~~~~~~L~pgG~l~~~~~~ 159 (237)
+++...+++|+++.=+...
T Consensus 63 ~~~~~~~~~~~iv~Dv~Sv 81 (258)
T PF02153_consen 63 EEIAPYLKPGAIVTDVGSV 81 (258)
T ss_dssp HHHHCGS-TTSEEEE--S-
T ss_pred HHhhhhcCCCcEEEEeCCC
Confidence 9999999998777655433
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=87.81 E-value=3.1 Score=31.35 Aligned_cols=94 Identities=19% Similarity=0.194 Sum_probs=56.1
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
+|-=||+|. | .....+++.++ .+++.|.+++..+.+.+.- -....+..+.. ...|+|++.-+
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g------~~~~~s~~e~~----~~~dvvi~~v~----- 66 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAG------AEVADSPAEAA----EQADVVILCVP----- 66 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTT------EEEESSHHHHH----HHBSEEEE-SS-----
T ss_pred EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhh------hhhhhhhhhHh----hcccceEeecc-----
Confidence 455677765 2 33344555676 9999999998888777652 12223333332 23499988422
Q ss_pred cCCCChHHHHHHHHH--HHHhcCCCcEEEEEEcCCchh
Q 026558 128 CGSNSRQNATQMLKE--VWRVLKDKGVYILVTYGAPIY 163 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~--~~~~L~pgG~l~~~~~~~~~~ 163 (237)
+.....+++.. +...|++|.+++-.+-..|..
T Consensus 67 ----~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~ 100 (163)
T PF03446_consen 67 ----DDDAVEAVLFGENILAGLRPGKIIIDMSTISPET 100 (163)
T ss_dssp ----SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHH
T ss_pred ----cchhhhhhhhhhHHhhccccceEEEecCCcchhh
Confidence 33677888888 889998888887666555544
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=87.80 E-value=5.4 Score=33.36 Aligned_cols=92 Identities=13% Similarity=0.172 Sum_probs=55.8
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCe-EEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccc---ccccCCCccEEEecccc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYED-VVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM---DEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~-~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~---~~~~~~~fD~I~~~~~l 123 (237)
.+||-+|+|. |..+..+++....+ +++++.+++..+.+++... . .++..+-.+. .......+|+|+....
T Consensus 161 ~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~--~--~~~~~~~~~~~~~~~~~~~~vd~v~~~~~- 235 (334)
T cd08234 161 DSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGA--T--ETVDPSREDPEAQKEDNPYGFDVVIEATG- 235 (334)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC--e--EEecCCCCCHHHHHHhcCCCCcEEEECCC-
Confidence 3888888653 55555566654335 8899999988888755321 1 2222111111 0013456999986421
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
....+..+.++|+++|+++...
T Consensus 236 ------------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 236 ------------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred ------------ChHHHHHHHHHHhcCCEEEEEe
Confidence 1246777889999999998764
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=87.77 E-value=6.2 Score=33.44 Aligned_cols=92 Identities=15% Similarity=0.193 Sum_probs=55.2
Q ss_pred CcEEEEccCC-chhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc---cccc-cccc-cCCCccEEEecc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQ-MDEF-QTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~---d~~~-~~~~-~~~~fD~I~~~~ 121 (237)
.+||-.|+|. |..+..+++.. ...++++|.++...+.+++.-. ..++.. +... ...+ ....+|+|+...
T Consensus 168 ~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~----~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~ 243 (351)
T cd08285 168 DTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGA----TDIVDYKNGDVVEQILKLTGGKGVDAVIIAG 243 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC----ceEecCCCCCHHHHHHHHhCCCCCcEEEECC
Confidence 3788888754 55556666654 3369999999888877775311 112111 1110 1111 234699998632
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
. ....+..+.+.|+++|+++...
T Consensus 244 g-------------~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 244 G-------------GQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred C-------------CHHHHHHHHHHhhcCCEEEEec
Confidence 1 1245788899999999988654
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.55 E-value=5.6 Score=35.01 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=59.5
Q ss_pred cEEEEccCCc--hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--CCCcE-----EE-EccccccccccCCCccEEEe
Q 026558 50 RILIVGCGNS--AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLK-----YI-KMDVRQMDEFQTGSFDSVVD 119 (237)
Q Consensus 50 ~iLdlG~G~G--~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~~~~~-----~~-~~d~~~~~~~~~~~fD~I~~ 119 (237)
+|.-+|.|.- ..+..+++.|+ +++++|+++..++..+..... .+.+. .. .+... .. ......|+|+.
T Consensus 5 kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~-~~-~~~~~aDvvii 81 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLR-AT-TTPEPADAFLI 81 (415)
T ss_pred EEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCcee-ee-cccccCCEEEE
Confidence 6788888873 34455677777 999999999988864322110 00000 00 00000 00 01125788877
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCch
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 162 (237)
.-+-..-..+..........++.+...+++|.+++..+-..|.
T Consensus 82 ~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pg 124 (415)
T PRK11064 82 AVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVG 124 (415)
T ss_pred EcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 4332100001112256677788899999988777665544443
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.55 E-value=5.3 Score=33.16 Aligned_cols=94 Identities=19% Similarity=0.339 Sum_probs=58.2
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC---------CC----------CCcEEEEcccccccc
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS---------NR----------PQLKYIKMDVRQMDE 108 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~---------~~----------~~~~~~~~d~~~~~~ 108 (237)
+|.-||+|. | .+...++..++ +|+..|.+++.++.+.+++. +. .++.+ ..|...
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~--- 80 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLED--- 80 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHH---
Confidence 688889887 3 44455666776 99999999998887654321 10 01121 112211
Q ss_pred ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 109 ~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
-...|+|+..-+ . ..+....+++++...++++.+++..+.
T Consensus 81 --~~~aD~Vieavp-e-------~~~~k~~~~~~l~~~~~~~~ii~s~ts 120 (292)
T PRK07530 81 --LADCDLVIEAAT-E-------DETVKRKIFAQLCPVLKPEAILATNTS 120 (292)
T ss_pred --hcCCCEEEEcCc-C-------CHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 235788887522 1 224566788899999999887764443
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.45 E-value=3.4 Score=35.43 Aligned_cols=93 Identities=18% Similarity=0.222 Sum_probs=54.8
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEc-c----ccc-cccccCCCccEEEec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKM-D----VRQ-MDEFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~-d----~~~-~~~~~~~~fD~I~~~ 120 (237)
.+||-.|+|. |..+..+++.... .+++++.++..++.+++.-. . .++.. + ..+ ........+|+|+..
T Consensus 186 ~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga--~--~~i~~~~~~~~~~~~~~~~~~~g~d~vid~ 261 (365)
T cd08277 186 STVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGA--T--DFINPKDSDKPVSEVIREMTGGGVDYSFEC 261 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC--C--cEeccccccchHHHHHHHHhCCCCCEEEEC
Confidence 3888888754 5555555665433 79999999998888865321 1 11111 0 011 111123468999863
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCC-cEEEEEEc
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTY 158 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 158 (237)
.. ....+..+.+.|+++ |+++....
T Consensus 262 ~g-------------~~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 262 TG-------------NADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CC-------------ChHHHHHHHHhcccCCCEEEEEcC
Confidence 21 023577788899886 98887653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=87.35 E-value=10 Score=35.18 Aligned_cols=95 Identities=14% Similarity=0.145 Sum_probs=60.3
Q ss_pred cEEEEccCC-chhHHH-HHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc---ccCCCccEEEeccccc
Q 026558 50 RILIVGCGN-SAFSEG-MVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGTLD 124 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~-~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~I~~~~~l~ 124 (237)
+|+=+|+|. |..... +.+.+. +++.+|.+++.++.+++. +..++.+|+.+..- ..-++.|.+++. .+
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~L~~agi~~A~~vv~~--~~ 473 (601)
T PRK03659 402 QVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKY-----GYKVYYGDATQLELLRAAGAEKAEAIVIT--CN 473 (601)
T ss_pred CEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhC-----CCeEEEeeCCCHHHHHhcCCccCCEEEEE--eC
Confidence 677776665 443322 233444 999999999999988763 46789999987542 233567888773 21
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+ ......+-...|.+.|...++....++
T Consensus 474 -------d-~~~n~~i~~~~r~~~p~~~IiaRa~~~ 501 (601)
T PRK03659 474 -------E-PEDTMKIVELCQQHFPHLHILARARGR 501 (601)
T ss_pred -------C-HHHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 1 222333444566678888887765444
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=87.10 E-value=5.2 Score=33.76 Aligned_cols=92 Identities=12% Similarity=0.120 Sum_probs=57.4
Q ss_pred CcEEEEcc--CCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEE-c---cccc-cccccCCCccEEEecc
Q 026558 49 QRILIVGC--GNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK-M---DVRQ-MDEFQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~--G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~-~---d~~~-~~~~~~~~fD~I~~~~ 121 (237)
.+||-.|+ |.|..+..+++....++++++.+++..+.+++.+.. . .++. . +..+ +.......+|+|+..
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa-~--~vi~~~~~~~~~~~i~~~~~~gvd~v~d~- 228 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGF-D--DAFNYKEEPDLDAALKRYFPNGIDIYFDN- 228 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC-c--eeEEcCCcccHHHHHHHhCCCCcEEEEEC-
Confidence 38888886 336666777776545899999999888888874421 1 1121 1 1111 111123568988863
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
. . ...+..+.++|+++|+++...
T Consensus 229 ----~-------g--~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 229 ----V-------G--GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred ----C-------C--HHHHHHHHHHhccCcEEEEec
Confidence 1 1 135778899999999998654
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.03 E-value=11 Score=30.37 Aligned_cols=73 Identities=15% Similarity=0.297 Sum_probs=47.7
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccc---------cCCCc
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEF---------QTGSF 114 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~---------~~~~f 114 (237)
++|-.|++.|. +...+++.|. +++.++.++..++...+.+.. ..++.++.+|+.+.... .-+..
T Consensus 9 ~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 87 (260)
T PRK07063 9 VALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFGPL 87 (260)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 78888865442 2334455665 899999998877776666532 24577888898764311 12578
Q ss_pred cEEEecccc
Q 026558 115 DSVVDKGTL 123 (237)
Q Consensus 115 D~I~~~~~l 123 (237)
|+++.+...
T Consensus 88 d~li~~ag~ 96 (260)
T PRK07063 88 DVLVNNAGI 96 (260)
T ss_pred cEEEECCCc
Confidence 999887643
|
|
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=86.98 E-value=10 Score=32.45 Aligned_cols=93 Identities=13% Similarity=0.203 Sum_probs=55.7
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEc-c----ccc-cccccCCCccEEEec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKM-D----VRQ-MDEFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~-d----~~~-~~~~~~~~fD~I~~~ 120 (237)
.+||-+|+|. |..+..+++.... .++++|.+++.++.+++.-. ..++.. + ..+ ......+.+|+|+..
T Consensus 188 ~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa----~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~ 263 (368)
T cd08300 188 STVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGA----TDCVNPKDHDKPIQQVLVEMTDGGVDYTFEC 263 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC----CEEEcccccchHHHHHHHHHhCCCCcEEEEC
Confidence 3888888754 5565666665434 69999999999888865311 112211 1 111 101123468999873
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCC-cEEEEEEc
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTY 158 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 158 (237)
.. . ...+..+.+.|+++ |+++....
T Consensus 264 ~g--~-----------~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 264 IG--N-----------VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred CC--C-----------hHHHHHHHHhhccCCCeEEEEcc
Confidence 11 0 23577788899887 98887653
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=86.87 E-value=2.3 Score=35.19 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=44.6
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS 91 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~ 91 (237)
+...+......+. .|||.-+|+|..+......+- ..+|+|++++-++.+.+++.
T Consensus 212 ~~r~i~~~s~~~d-iVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~ 265 (302)
T COG0863 212 IERLIRDYSFPGD-IVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQ 265 (302)
T ss_pred HHHHHHhcCCCCC-EEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHH
Confidence 4455555445554 999999999999998888875 89999999999999999985
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.83 E-value=12 Score=29.65 Aligned_cols=105 Identities=12% Similarity=0.170 Sum_probs=56.9
Q ss_pred cEEEEccCCchhHHHH----HHcCCCeEEEEeCCH-HHHHHHHHHcCC-CCCcEEEEccccccccc----c-----CCCc
Q 026558 50 RILIVGCGNSAFSEGM----VDDGYEDVVNVDISS-VVIEAMMKKYSN-RPQLKYIKMDVRQMDEF----Q-----TGSF 114 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~-~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~----~-----~~~f 114 (237)
++|-.|+ +|.++..+ ++.++ ++++++.+. ...+.....++. ..++.++.+|+.+.... . -+..
T Consensus 8 ~vlItGa-sggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 85 (248)
T PRK07806 8 TALVTGS-SRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGGL 85 (248)
T ss_pred EEEEECC-CCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 7888886 34444444 44565 788887653 233333332221 13567888898764321 1 1468
Q ss_pred cEEEeccccceeccCC-------CChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 115 DSVVDKGTLDSLLCGS-------NSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~-------~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
|+++.+...... ... .+......+++.+.+.++.+|.+++.+
T Consensus 86 d~vi~~ag~~~~-~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 86 DALVLNASGGME-SGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred cEEEECCCCCCC-CCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 988876532211 000 011234467777777777677776654
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=86.75 E-value=8.8 Score=31.79 Aligned_cols=95 Identities=16% Similarity=0.174 Sum_probs=54.6
Q ss_pred cEEEEccCC-ch-hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEE-Ecc-ccccccccCCCccEEEeccccce
Q 026558 50 RILIVGCGN-SA-FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYI-KMD-VRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 50 ~iLdlG~G~-G~-~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~-~~d-~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
+|+-+|+|. |. ++..+++.++ +|+.++.+++.++..++.-.....-... ... ..+.. ....+|+|+..-.-
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~d~vila~k~-- 76 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPA--ELGPQDLVILAVKA-- 76 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCCcccCCceeecccCCCChh--HcCCCCEEEEeccc--
Confidence 578889887 33 4444566665 8999999877776665532110000000 000 11111 12678999875322
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+...+++.+...+.++..++...
T Consensus 77 --------~~~~~~~~~l~~~l~~~~~iv~~~ 100 (304)
T PRK06522 77 --------YQLPAALPSLAPLLGPDTPVLFLQ 100 (304)
T ss_pred --------ccHHHHHHHHhhhcCCCCEEEEec
Confidence 345778888888888877666544
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=86.60 E-value=11 Score=34.60 Aligned_cols=92 Identities=10% Similarity=0.105 Sum_probs=57.1
Q ss_pred cEEEEccCC-chhHHH-HHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc---ccCCCccEEEeccccc
Q 026558 50 RILIVGCGN-SAFSEG-MVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGTLD 124 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~-~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~I~~~~~l~ 124 (237)
+|+=+|||. |..... +.+++. +++.+|.+++.++.+++. +...+.+|..+... ..-++.|.++..-.
T Consensus 419 hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~-----g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~-- 490 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRER-----GIRAVLGNAANEEIMQLAHLDCARWLLLTIP-- 490 (558)
T ss_pred CEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHC-----CCeEEEcCCCCHHHHHhcCccccCEEEEEcC--
Confidence 788887776 443333 333455 899999999999988753 57899999987532 23357887665211
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+ ++....+-...+...|+..++...
T Consensus 491 -------~-~~~~~~iv~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 491 -------N-GYEAGEIVASAREKRPDIEIIARA 515 (558)
T ss_pred -------C-hHHHHHHHHHHHHHCCCCeEEEEE
Confidence 1 122222333445567777666654
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.51 E-value=9 Score=30.40 Aligned_cols=71 Identities=15% Similarity=0.239 Sum_probs=45.6
Q ss_pred cEEEEccCCchhHHHH----HHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccc----c-----CCCcc
Q 026558 50 RILIVGCGNSAFSEGM----VDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF----Q-----TGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~----~-----~~~fD 115 (237)
+||-.|+ +|.++..+ ++++. ++++++.+++.++...+.+.. ..++.++.+|+.+.... . -+..|
T Consensus 9 ~vlItGa-~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 86 (250)
T PRK12939 9 RALVTGA-ARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGLD 86 (250)
T ss_pred EEEEeCC-CChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 7887775 55555544 44555 899999888776665555432 24678888999764311 1 15689
Q ss_pred EEEeccc
Q 026558 116 SVVDKGT 122 (237)
Q Consensus 116 ~I~~~~~ 122 (237)
+|+....
T Consensus 87 ~vi~~ag 93 (250)
T PRK12939 87 GLVNNAG 93 (250)
T ss_pred EEEECCC
Confidence 9988654
|
|
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=86.37 E-value=8.1 Score=32.48 Aligned_cols=92 Identities=13% Similarity=0.168 Sum_probs=54.4
Q ss_pred CcEEEEccCC-chhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc---cccc-ccc-ccCCCccEEEecc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQ-MDE-FQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~---d~~~-~~~-~~~~~fD~I~~~~ 121 (237)
.+||..|+|. |..+..+++... ..+++++.++...+.+++.-. ..++.. +..+ +.. ...+.+|+|+...
T Consensus 169 ~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~----~~vi~~~~~~~~~~i~~~~~~~~~d~vld~~ 244 (347)
T cd05278 169 STVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGA----TDIINPKNGDIVEQILELTGGRGVDCVIEAV 244 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCC----cEEEcCCcchHHHHHHHHcCCCCCcEEEEcc
Confidence 3777777653 566666666543 378888888877777665421 112211 1111 110 1235799998632
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.- ...+..+.+.|+++|+++...
T Consensus 245 g~-------------~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 245 GF-------------EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred CC-------------HHHHHHHHHHhhcCCEEEEEc
Confidence 10 246788889999999987654
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=86.36 E-value=4.5 Score=38.26 Aligned_cols=97 Identities=14% Similarity=0.217 Sum_probs=66.7
Q ss_pred CcEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-------CC------------CcEEEEccccccc
Q 026558 49 QRILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-------RP------------QLKYIKMDVRQMD 107 (237)
Q Consensus 49 ~~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-------~~------------~~~~~~~d~~~~~ 107 (237)
.+|--||+|+ | .+...++..|. .|+.+|.+++.++.+++++.. .. ++.+. .| +.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~~ 388 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LS---YA 388 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CC---HH
Confidence 3789999998 4 45555667776 999999999999887765521 00 11111 11 11
Q ss_pred cccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 108 EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 108 ~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.-...|+|+-. +.+.+ +..++++.++-++++|+.++...|.+-
T Consensus 389 --~~~~aDlViEa-v~E~l-------~~K~~vf~~l~~~~~~~~ilasnTS~l 431 (714)
T TIGR02437 389 --GFDNVDIVVEA-VVENP-------KVKAAVLAEVEQHVREDAILASNTSTI 431 (714)
T ss_pred --HhcCCCEEEEc-CcccH-------HHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 12467888876 55544 888999999999999998887766443
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=86.22 E-value=4.5 Score=33.76 Aligned_cols=91 Identities=10% Similarity=0.070 Sum_probs=56.3
Q ss_pred CcEEEEcc--CCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc---cccc-cccccCCCccEEEeccc
Q 026558 49 QRILIVGC--GNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQ-MDEFQTGSFDSVVDKGT 122 (237)
Q Consensus 49 ~~iLdlG~--G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~---d~~~-~~~~~~~~fD~I~~~~~ 122 (237)
.+||-.|+ |.|..+..+++....++++++.+++..+.+++.- . ..++.. |..+ +.......+|+|+....
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~G-a---~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g 220 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELG-F---DAVFNYKTVSLEEALKEAAPDGIDCYFDNVG 220 (329)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC-C---CEEEeCCCccHHHHHHHHCCCCcEEEEECCC
Confidence 37888874 3366667677765458999999998888887631 1 122211 1111 11122356898886311
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...+..+.+.|+++|+++...
T Consensus 221 --------------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 221 --------------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred --------------HHHHHHHHHhhccCCEEEEEc
Confidence 135688899999999987653
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.11 E-value=9.4 Score=30.09 Aligned_cols=71 Identities=18% Similarity=0.304 Sum_probs=46.3
Q ss_pred cEEEEccCCchhHHHHH----HcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc----c-----CCCccE
Q 026558 50 RILIVGCGNSAFSEGMV----DDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF----Q-----TGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~----~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~----~-----~~~fD~ 116 (237)
.||-.|+ +|.++..++ +.+. ++++++.++...+...+.+.....+.++.+|+.+...+ . -+.+|+
T Consensus 8 ~ilItGa-tg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 85 (237)
T PRK07326 8 VALITGG-SKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGLDV 85 (237)
T ss_pred EEEEECC-CCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 7888884 666555554 4555 89999998877766655543224677888888764311 1 146899
Q ss_pred EEeccc
Q 026558 117 VVDKGT 122 (237)
Q Consensus 117 I~~~~~ 122 (237)
|+....
T Consensus 86 vi~~ag 91 (237)
T PRK07326 86 LIANAG 91 (237)
T ss_pred EEECCC
Confidence 987643
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=86.08 E-value=3.5 Score=39.15 Aligned_cols=97 Identities=19% Similarity=0.243 Sum_probs=66.5
Q ss_pred CcEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-------CC------------CcEEEEccccccc
Q 026558 49 QRILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-------RP------------QLKYIKMDVRQMD 107 (237)
Q Consensus 49 ~~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-------~~------------~~~~~~~d~~~~~ 107 (237)
.+|--||+|+ | .+...++..|. .|+.+|.+++.++.+.+++.. .. ++.+. .|..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~--- 410 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYS--- 410 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH---
Confidence 3789999998 4 44555666776 999999999999987766521 00 11111 1111
Q ss_pred cccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 108 EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 108 ~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.-...|+|+-. +++.+ +...+++.++-++++|+.++...|.+-
T Consensus 411 --~~~~aDlViEA-v~E~l-------~~K~~vf~~l~~~~~~~~ilasNTSsl 453 (737)
T TIGR02441 411 --GFKNADMVIEA-VFEDL-------SLKHKVIKEVEAVVPPHCIIASNTSAL 453 (737)
T ss_pred --HhccCCeehhh-ccccH-------HHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 12457888765 45544 888999999999999999887766443
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=86.06 E-value=14 Score=32.62 Aligned_cols=66 Identities=20% Similarity=0.307 Sum_probs=45.8
Q ss_pred CcEEEEccCCchhHHHHHH----cCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc---ccCCCccEEEec
Q 026558 49 QRILIVGCGNSAFSEGMVD----DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~----~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~I~~~ 120 (237)
.+|+=+|+|. ++..+++ .+. .++.+|.+++.++.+++.. .++.++.+|..+... ..-..+|.|++.
T Consensus 232 ~~iiIiG~G~--~g~~l~~~L~~~~~-~v~vid~~~~~~~~~~~~~---~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 232 KRVMIVGGGN--IGYYLAKLLEKEGY-SVKLIERDPERAEELAEEL---PNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CEEEEECCCH--HHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHC---CCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 3788888755 4444433 344 8999999999998888764 356788999876432 234578888763
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.98 E-value=9.4 Score=32.61 Aligned_cols=92 Identities=22% Similarity=0.247 Sum_probs=53.5
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEE-ccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK-MDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~-~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+||-.|+|. |..+..+++....++++++.+++....+.+.+.. . .++. .+...+... ...+|+|+....
T Consensus 182 ~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga-~--~~i~~~~~~~~~~~-~~~~D~vid~~g---- 253 (357)
T PLN02514 182 LRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGA-D--DYLVSSDAAEMQEA-ADSLDYIIDTVP---- 253 (357)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCC-c--EEecCCChHHHHHh-cCCCcEEEECCC----
Confidence 3777777755 6666666666444788888888776666554421 1 1111 111111111 235888876321
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
....+..+.+.|+++|+++...
T Consensus 254 ---------~~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 254 ---------VFHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred ---------chHHHHHHHHHhccCCEEEEEC
Confidence 0235677889999999988765
|
|
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=85.82 E-value=12 Score=31.12 Aligned_cols=87 Identities=18% Similarity=0.274 Sum_probs=53.1
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+||-.|+|. |..+..+++....++++++.+++..+.+++ +. .... .+.... .....+|+|+....
T Consensus 157 ~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~-~g----~~~~-~~~~~~--~~~~~~d~vid~~g----- 223 (319)
T cd08242 157 DKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR-LG----VETV-LPDEAE--SEGGGFDVVVEATG----- 223 (319)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cC----CcEE-eCcccc--ccCCCCCEEEECCC-----
Confidence 3788877543 444444454433479999999999888887 31 1111 111111 23456999987421
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
....+..+.+.|+++|.++..
T Consensus 224 --------~~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 224 --------SPSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred --------ChHHHHHHHHHhhcCCEEEEE
Confidence 023567788899999999874
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=85.81 E-value=9.8 Score=33.02 Aligned_cols=119 Identities=14% Similarity=0.202 Sum_probs=64.6
Q ss_pred HHHHHhhCCCCCCcEEEEccCCch----hHHHHHHcC----CCeEEEEeC----CHHHHHHHHHHcCC-----CCCcEEE
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSA----FSEGMVDDG----YEDVVNVDI----SSVVIEAMMKKYSN-----RPQLKYI 99 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~----~~~~~~~~~----~~~~~~vD~----s~~~~~~a~~~~~~-----~~~~~~~ 99 (237)
..++........-+|+|+|.|.|. +...++.+. .-++|+|+. +...++.+.+++.. .-.++|.
T Consensus 100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~ 179 (374)
T PF03514_consen 100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFH 179 (374)
T ss_pred HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEE
Confidence 444444444433489999999994 333444432 229999999 88888888877631 1134444
Q ss_pred Ec---cccccc--c--ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEE
Q 026558 100 KM---DVRQMD--E--FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (237)
Q Consensus 100 ~~---d~~~~~--~--~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 155 (237)
.. +..++. . ...+..=+|-+...+|++.............+=...+.|+|.-++++
T Consensus 180 ~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~ 242 (374)
T PF03514_consen 180 PVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLV 242 (374)
T ss_pred ecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEE
Confidence 42 222221 0 22333333434445677742222223334444456678899855544
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.75 E-value=4 Score=34.21 Aligned_cols=94 Identities=12% Similarity=0.207 Sum_probs=55.5
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC---C---CC--------CcEEEEccccccccccCCC
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS---N---RP--------QLKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~---~---~~--------~~~~~~~d~~~~~~~~~~~ 113 (237)
+|.-||+|. | .+...++..++ +++++|.+++.++.+++... + .. ++.+ ..|..+. -..
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~----~~~ 79 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAA----VSG 79 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHH----hcc
Confidence 688889987 3 45555666666 89999999999888776421 0 00 0111 1111111 245
Q ss_pred ccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 114 fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.|+|+..-. . .......++.++..+++++.+++..+
T Consensus 80 aDlVi~av~-~-------~~~~~~~v~~~l~~~~~~~~ii~s~t 115 (311)
T PRK06130 80 ADLVIEAVP-E-------KLELKRDVFARLDGLCDPDTIFATNT 115 (311)
T ss_pred CCEEEEecc-C-------cHHHHHHHHHHHHHhCCCCcEEEECC
Confidence 799887522 1 11346678888888777665544333
|
|
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=85.62 E-value=6.3 Score=33.16 Aligned_cols=92 Identities=12% Similarity=0.138 Sum_probs=54.7
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc--ccCCCccEEEeccccce
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE--FQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~--~~~~~fD~I~~~~~l~~ 125 (237)
.+||-.|+|. |..+..+++....+++.++.+++.++.+++.- . ..++...-.+... .....+|+++....
T Consensus 165 ~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g-~---~~~i~~~~~~~~~~~~~~~~~d~vi~~~g--- 237 (333)
T cd08296 165 DLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLG-A---HHYIDTSKEDVAEALQELGGAKLILATAP--- 237 (333)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcC-C---cEEecCCCccHHHHHHhcCCCCEEEECCC---
Confidence 3888888654 55555566654448999999988888885431 1 1122111111100 01135888885311
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
....+..+.+.|+++|.++...
T Consensus 238 ----------~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 238 ----------NAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred ----------chHHHHHHHHHcccCCEEEEEe
Confidence 1236777899999999988765
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted | Back alignment and domain information |
|---|
Probab=85.46 E-value=4.9 Score=32.63 Aligned_cols=99 Identities=14% Similarity=0.160 Sum_probs=60.9
Q ss_pred EEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc-c--ccCCCccEEEeccccceecc
Q 026558 52 LIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD-E--FQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 52 LdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~--~~~~~fD~I~~~~~l~~~~~ 128 (237)
|..=+|+=.++..+.+.. .+.+.+|+.+.-.+..++++....++.+...|..+.. . -+..+=-+|+.+.+++.-
T Consensus 62 l~~YPGSP~ia~~llR~q-Drl~l~ELHp~d~~~L~~~~~~~~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~~-- 138 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLREQ-DRLVLFELHPQDFEALKKNFRRDRRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQK-- 138 (245)
T ss_dssp --EEE-HHHHHHHHS-TT-SEEEEE--SHHHHHHHTTS--TTS-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----ST--
T ss_pred cCcCCCCHHHHHHhCCcc-ceEEEEecCchHHHHHHHHhccCCccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCCc--
Confidence 667788877887777775 5999999999999999999987678999999986621 0 134456788888777654
Q ss_pred CCCChHHHHHHHHHHHHhcC--CCcEEEEEEc
Q 026558 129 GSNSRQNATQMLKEVWRVLK--DKGVYILVTY 158 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~--pgG~l~~~~~ 158 (237)
.+..++.+.+..+++ +.|++++...
T Consensus 139 -----~dy~~v~~~l~~a~kR~~~G~~~iWYP 165 (245)
T PF04378_consen 139 -----DDYQRVVDALAKALKRWPTGVYAIWYP 165 (245)
T ss_dssp -----THHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred -----hHHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 677777777777776 6788777653
|
; PDB: 2OO3_A. |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=85.45 E-value=3.9 Score=27.50 Aligned_cols=85 Identities=24% Similarity=0.317 Sum_probs=50.4
Q ss_pred EEEEccCC-c-hhHHHHHHcC--CCeEE-EEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 51 ILIVGCGN-S-AFSEGMVDDG--YEDVV-NVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 51 iLdlG~G~-G-~~~~~~~~~~--~~~~~-~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
|.=||+|. | .++..+.+.+ ..+++ +.+.+++.++.+.+... +.+...+..+.. ...|+|+..-
T Consensus 2 I~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~----~~advvilav---- 69 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG----VQATADDNEEAA----QEADVVILAV---- 69 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT----TEEESEEHHHHH----HHTSEEEE-S----
T ss_pred EEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc----cccccCChHHhh----ccCCEEEEEE----
Confidence 44455555 2 2223344455 13777 55999999999888863 344433444432 2579998753
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 154 (237)
.+.+..++++++ ..+.++..++
T Consensus 70 ------~p~~~~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 70 ------KPQQLPEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp -------GGGHHHHHHHH-HHHHTTSEEE
T ss_pred ------CHHHHHHHHHHH-hhccCCCEEE
Confidence 345668888888 6666666654
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=85.40 E-value=2.5 Score=34.71 Aligned_cols=58 Identities=17% Similarity=0.285 Sum_probs=37.1
Q ss_pred CcEEEEccCCchhHHHHHHcC------CCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG------YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMD 107 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~------~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~ 107 (237)
..++|+|||.|.++.++++.. ...++.||-...-. .+-.++... +.+.=+..|+.++.
T Consensus 20 ~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 20 SCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred CEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccc
Confidence 489999999999999987753 34889999854222 222222221 24555666776643
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.38 E-value=14 Score=29.68 Aligned_cols=71 Identities=20% Similarity=0.345 Sum_probs=46.2
Q ss_pred CcEEEEccCCchhHHHH----HHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc----c-----CCCcc
Q 026558 49 QRILIVGCGNSAFSEGM----VDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF----Q-----TGSFD 115 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~----~-----~~~fD 115 (237)
+++|-.|++ |.++..+ +++++ ++++++.++...+...+..... ++.++.+|+.+.... . -+.+|
T Consensus 12 ~~vlItGa~-g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 88 (264)
T PRK12829 12 LRVLVTGGA-SGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLPGA-KVTATVADVADPAQVERVFDTAVERFGGLD 88 (264)
T ss_pred CEEEEeCCC-CcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcC-ceEEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence 389988864 5555544 44565 8999999887776655544321 457788888764321 1 14689
Q ss_pred EEEeccc
Q 026558 116 SVVDKGT 122 (237)
Q Consensus 116 ~I~~~~~ 122 (237)
+|+....
T Consensus 89 ~vi~~ag 95 (264)
T PRK12829 89 VLVNNAG 95 (264)
T ss_pred EEEECCC
Confidence 9988654
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=85.36 E-value=16 Score=30.56 Aligned_cols=70 Identities=10% Similarity=0.200 Sum_probs=46.2
Q ss_pred CcEEEEccCCchhHHHH----HHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCcc
Q 026558 49 QRILIVGCGNSAFSEGM----VDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFD 115 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD 115 (237)
++||-.|++ |.++..+ ++.|. ++++++.++...+.+.+.+ ..+.++.+|+.+.... ..+..|
T Consensus 27 k~vlITGas-ggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l---~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD 101 (315)
T PRK06196 27 KTAIVTGGY-SGLGLETTRALAQAGA-HVIVPARRPDVAREALAGI---DGVEVVMLDLADLESVRAFAERFLDSGRRID 101 (315)
T ss_pred CEEEEeCCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---hhCeEEEccCCCHHHHHHHHHHHHhcCCCCC
Confidence 378888854 5455444 44565 8999999887766555444 2477888898775321 125789
Q ss_pred EEEecccc
Q 026558 116 SVVDKGTL 123 (237)
Q Consensus 116 ~I~~~~~l 123 (237)
+++.+...
T Consensus 102 ~li~nAg~ 109 (315)
T PRK06196 102 ILINNAGV 109 (315)
T ss_pred EEEECCCC
Confidence 99987654
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.18 E-value=14 Score=30.62 Aligned_cols=106 Identities=16% Similarity=0.143 Sum_probs=57.1
Q ss_pred cEEEEccCCchhHH----HHHHcCCCeEEEEeCCH-HHHHHHHHHcCC-CCCcEEEEccccccccc----c-----CCCc
Q 026558 50 RILIVGCGNSAFSE----GMVDDGYEDVVNVDISS-VVIEAMMKKYSN-RPQLKYIKMDVRQMDEF----Q-----TGSF 114 (237)
Q Consensus 50 ~iLdlG~G~G~~~~----~~~~~~~~~~~~vD~s~-~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~----~-----~~~f 114 (237)
+||-.|++. .++. .+++.|. +++.++.++ ...+...+.+.. ..++.++.+|+.+.... . -+..
T Consensus 48 ~iLItGasg-gIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~i 125 (290)
T PRK06701 48 VALITGGDS-GIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGRL 125 (290)
T ss_pred EEEEeCCCc-HHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 788888644 3444 4455665 888888764 223333333321 23567888898764311 1 1468
Q ss_pred cEEEeccccceeccC--CCChH-----------HHHHHHHHHHHhcCCCcEEEEEE
Q 026558 115 DSVVDKGTLDSLLCG--SNSRQ-----------NATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 115 D~I~~~~~l~~~~~~--~~~~~-----------~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
|+|+.+......... ..+.+ ....+++.+.+.++++|.+++.+
T Consensus 126 D~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 126 DILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred CEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 999876543211000 01111 23345566667777778777655
|
|
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=85.17 E-value=9.8 Score=31.95 Aligned_cols=91 Identities=22% Similarity=0.237 Sum_probs=56.2
Q ss_pred cEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc---cccc-ccc-ccCCCccEEEecccc
Q 026558 50 RILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQ-MDE-FQTGSFDSVVDKGTL 123 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~---d~~~-~~~-~~~~~fD~I~~~~~l 123 (237)
+||-.|+|. |..+..+++....+++++..+++..+.+++... ..++.. +..+ +.. .....+|+++....
T Consensus 162 ~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~----~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~g- 236 (337)
T cd08261 162 TVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGA----DDTINVGDEDVAARLRELTDGEGADVVIDATG- 236 (337)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCC----CEEecCcccCHHHHHHHHhCCCCCCEEEECCC-
Confidence 888888754 666666776644589999888888887755321 112111 1111 111 13356899987421
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
-...+..+.+.|+++|.++...
T Consensus 237 ------------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 237 ------------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred ------------CHHHHHHHHHHHhcCCEEEEEc
Confidence 0235788899999999988654
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.14 E-value=17 Score=29.32 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=48.2
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEcccccccc----c-----cCCCccE
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDE----F-----QTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~----~-----~~~~fD~ 116 (237)
++|-.|++.|. +...+++.+. +++.++.++..++.+.+.+.. ..++.++.+|+.+... + .-+..|+
T Consensus 12 ~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 90 (265)
T PRK07097 12 IALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGVIDI 90 (265)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence 78888876542 3344566665 888889988777766655532 2357788899976431 1 1256899
Q ss_pred EEecccc
Q 026558 117 VVDKGTL 123 (237)
Q Consensus 117 I~~~~~l 123 (237)
++.+...
T Consensus 91 li~~ag~ 97 (265)
T PRK07097 91 LVNNAGI 97 (265)
T ss_pred EEECCCC
Confidence 9987654
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=85.05 E-value=6.1 Score=32.86 Aligned_cols=94 Identities=15% Similarity=0.227 Sum_probs=57.9
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-------CCCC-----------cEEEEccccccccc
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-------NRPQ-----------LKYIKMDVRQMDEF 109 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-------~~~~-----------~~~~~~d~~~~~~~ 109 (237)
+|.-||+|. | .+...++..+. +++++|.+++.++.+++++. .... ......+. .
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~-- 79 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL---E-- 79 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH---H--
Confidence 688889886 4 44455666665 99999999999887655431 0000 00111111 1
Q ss_pred cCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 110 QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 110 ~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.-...|+|+..-. ++++....++.++...++++.+++..+
T Consensus 80 ~~~~aD~Vieav~--------e~~~~k~~v~~~l~~~~~~~~il~s~t 119 (295)
T PLN02545 80 ELRDADFIIEAIV--------ESEDLKKKLFSELDRICKPSAILASNT 119 (295)
T ss_pred HhCCCCEEEEcCc--------cCHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 1245688887522 234667788999999999987665433
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=85.05 E-value=16 Score=30.56 Aligned_cols=91 Identities=10% Similarity=0.073 Sum_probs=56.1
Q ss_pred CcEEEEcc--CCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc----cccc-cccccCCCccEEEecc
Q 026558 49 QRILIVGC--GNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM----DVRQ-MDEFQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~--G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~----d~~~-~~~~~~~~fD~I~~~~ 121 (237)
.+||-.|+ |.|..+..+++....++++++.+++..+.+++. .. ..++.. +..+ ......+.+|+|+...
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~l-Ga---~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~ 215 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKL-GF---DVAFNYKTVKSLEETLKKASPDGYDCYFDNV 215 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-CC---CEEEeccccccHHHHHHHhCCCCeEEEEECC
Confidence 38888884 347777777776545899999999888888653 11 112111 1111 1111234689888631
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
. ...+..+.++|+++|+++...
T Consensus 216 G--------------~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 216 G--------------GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred C--------------HHHHHHHHHHhCcCcEEEEec
Confidence 1 124577899999999998754
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.00 E-value=14 Score=29.85 Aligned_cols=70 Identities=21% Similarity=0.340 Sum_probs=43.7
Q ss_pred cEEEEccCCchhHHH----HHHcCCCeEEEEeCCHHHHHHHHHHcC-CCCCcEEEEccccccccc---------cCCCcc
Q 026558 50 RILIVGCGNSAFSEG----MVDDGYEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEF---------QTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~----~~~~~~~~~~~vD~s~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~---------~~~~fD 115 (237)
+||-.|. +|.++.. +++.|. .|++++.++..++...+.+. ...++.++.+|+.+.... ..+..|
T Consensus 11 ~ilItGa-sggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~iD 88 (264)
T PRK07576 11 NVVVVGG-TSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGPID 88 (264)
T ss_pred EEEEECC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 7888875 5555444 444555 89999998877665544432 123567788888764311 124689
Q ss_pred EEEecc
Q 026558 116 SVVDKG 121 (237)
Q Consensus 116 ~I~~~~ 121 (237)
+++.+.
T Consensus 89 ~vi~~a 94 (264)
T PRK07576 89 VLVSGA 94 (264)
T ss_pred EEEECC
Confidence 998764
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=84.93 E-value=10 Score=31.90 Aligned_cols=84 Identities=19% Similarity=0.241 Sum_probs=48.5
Q ss_pred CcEEEEccCC--chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~--G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+|.=+|+|. |.++..+.+.+. +++++|.++. .+.+++ . ++.. ..|..+.. ....|+|+..-.
T Consensus 37 ~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~~-~~~a~~-~----gv~~-~~~~~e~~---~~~aDvVilavp---- 101 (304)
T PLN02256 37 LKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSDY-SDIAAE-L----GVSF-FRDPDDFC---EEHPDVVLLCTS---- 101 (304)
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECccH-HHHHHH-c----CCee-eCCHHHHh---hCCCCEEEEecC----
Confidence 4888899876 334455555554 8999999863 233332 1 2222 22222221 235799987533
Q ss_pred ccCCCChHHHHHHHHHH-HHhcCCCcEE
Q 026558 127 LCGSNSRQNATQMLKEV-WRVLKDKGVY 153 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~-~~~L~pgG~l 153 (237)
......+++++ ...++++.++
T Consensus 102 ------~~~~~~vl~~l~~~~l~~~~iv 123 (304)
T PLN02256 102 ------ILSTEAVLRSLPLQRLKRSTLF 123 (304)
T ss_pred ------HHHHHHHHHhhhhhccCCCCEE
Confidence 24557777877 5667777644
|
|
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=84.91 E-value=15 Score=31.17 Aligned_cols=92 Identities=17% Similarity=0.221 Sum_probs=54.1
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccc-------cccc-ccCCCccEEE
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVR-------QMDE-FQTGSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-------~~~~-~~~~~fD~I~ 118 (237)
.+||-.|+|. |..+..+++.... ++++++.+++..+.+++. .. ..++..+-. .+.. .....+|+|+
T Consensus 179 ~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~---~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vi 254 (361)
T cd08231 179 DTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREF-GA---DATIDIDELPDPQRRAIVRDITGGRGADVVI 254 (361)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC---CeEEcCcccccHHHHHHHHHHhCCCCCcEEE
Confidence 3777777654 4555556665444 899999988887777543 11 111111110 0110 1234699998
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
....- ...+....+.|+++|+++...
T Consensus 255 d~~g~-------------~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 255 EASGH-------------PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred ECCCC-------------hHHHHHHHHHhccCCEEEEEc
Confidence 64210 235677889999999998764
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=84.90 E-value=14 Score=31.20 Aligned_cols=91 Identities=15% Similarity=0.202 Sum_probs=54.5
Q ss_pred cEEEEccCC-chhHHHHHHcCCCe-EEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc-------ccc-ccCCCccEEEe
Q 026558 50 RILIVGCGN-SAFSEGMVDDGYED-VVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-------MDE-FQTGSFDSVVD 119 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~~~~~~~~~-~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-------~~~-~~~~~fD~I~~ 119 (237)
+||-.|+|. |..+..+++....+ ++.++.+++..+.+++.. . . .++..+-.. +.. .....+|+|+.
T Consensus 165 ~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g-~-~--~vi~~~~~~~~~~~~~~~~~~~~~~~d~vld 240 (343)
T cd05285 165 TVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELG-A-T--HTVNVRTEDTPESAEKIAELLGGKGPDVVIE 240 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcC-C-c--EEeccccccchhHHHHHHHHhCCCCCCEEEE
Confidence 777777654 55666666654335 899988888887775531 1 1 111111111 111 23456999987
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...- ...+..+.+.|+++|+++...
T Consensus 241 ~~g~-------------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 241 CTGA-------------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCC-------------HHHHHHHHHHhhcCCEEEEEc
Confidence 4221 225778899999999988654
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=84.75 E-value=6.8 Score=32.78 Aligned_cols=89 Identities=13% Similarity=0.155 Sum_probs=52.8
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|+-+|+|. |......+.....+++.+|.++...+.++.. ...+. +..++. ..-..+|+|+..-+.
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~-----G~~~~--~~~~l~-~~l~~aDiVI~t~p~---- 220 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEM-----GLSPF--HLSELA-EEVGKIDIIFNTIPA---- 220 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc-----CCeee--cHHHHH-HHhCCCCEEEECCCh----
Confidence 4899999876 4433333433334999999998776666543 22322 122222 112468999985221
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.-+-+++.+.++||+.++-..+
T Consensus 221 ---------~~i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 221 ---------LVLTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred ---------hhhhHHHHHcCCCCcEEEEEcc
Confidence 1134567788999887765543
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=84.73 E-value=9.3 Score=33.32 Aligned_cols=106 Identities=18% Similarity=0.249 Sum_probs=63.2
Q ss_pred CcEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc----------cc---cc-cCC
Q 026558 49 QRILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ----------MD---EF-QTG 112 (237)
Q Consensus 49 ~~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~----------~~---~~-~~~ 112 (237)
.+|--+|-|. | -++..++++|+ .++|+||++..++....--. .+..-+... +. ++ .-.
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~-~ViG~DIn~~~Vd~ln~G~~-----~i~e~~~~~~v~~~v~~g~lraTtd~~~l~ 83 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGF-KVIGVDINQKKVDKLNRGES-----YIEEPDLDEVVKEAVESGKLRATTDPEELK 83 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCC-ceEeEeCCHHHHHHHhCCcc-----eeecCcHHHHHHHHHhcCCceEecChhhcc
Confidence 4777888777 3 23345567777 99999999998887654321 111111110 00 00 112
Q ss_pred CccEEEec-cc-cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCch
Q 026558 113 SFDSVVDK-GT-LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (237)
Q Consensus 113 ~fD~I~~~-~~-l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 162 (237)
..|+++.. .+ +.. ...++.....+..+.+.+.|++|-.+++.+-..|.
T Consensus 84 ~~dv~iI~VPTPl~~--~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PG 133 (436)
T COG0677 84 ECDVFIICVPTPLKK--YREPDLSYVESAARSIAPVLKKGDLVILESTTPPG 133 (436)
T ss_pred cCCEEEEEecCCcCC--CCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCC
Confidence 45665543 11 111 12245677888999999999999888887655554
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.27 E-value=20 Score=31.24 Aligned_cols=107 Identities=14% Similarity=0.145 Sum_probs=56.6
Q ss_pred cEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--CC---------CcEEEEccccccccccCCCccEE
Q 026558 50 RILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RP---------QLKYIKMDVRQMDEFQTGSFDSV 117 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~~---------~~~~~~~d~~~~~~~~~~~fD~I 117 (237)
+|--+|+|. |.-+..+...|+ +|+++|++++.++.+++.... .+ +.++.. + .+.. ......|+|
T Consensus 2 kI~VIGlGyvGl~~A~~lA~G~-~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~-t-~~~~-~~~~~ad~v 77 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQNH-EVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNA-T-LDKN-EAYRDADYV 77 (388)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-cEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEE-e-cchh-hhhcCCCEE
Confidence 355677775 533333333465 999999999999988875421 01 111111 0 0010 012456888
Q ss_pred Eeccccceec--cCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCch
Q 026558 118 VDKGTLDSLL--CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (237)
Q Consensus 118 ~~~~~l~~~~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 162 (237)
+..-+-. +- ....+.....+.++.+.+ +++|..++..+-.+|.
T Consensus 78 ii~Vpt~-~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pg 122 (388)
T PRK15057 78 IIATPTD-YDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVG 122 (388)
T ss_pred EEeCCCC-CccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCc
Confidence 7752211 10 001123566777788877 6777766665544444
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.15 E-value=17 Score=29.52 Aligned_cols=67 Identities=21% Similarity=0.451 Sum_probs=42.2
Q ss_pred cEEEEccCCchhHHHH----HHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccE
Q 026558 50 RILIVGCGNSAFSEGM----VDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (237)
++|-.|+ +|.++..+ ++.|. ++++++.++..++..... ++.++.+|+.+.... ..+..|+
T Consensus 3 ~vlItGa-sggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~-----~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 75 (274)
T PRK05693 3 VVLITGC-SSGIGRALADAFKAAGY-EVWATARKAEDVEALAAA-----GFTAVQLDVNDGAALARLAEELEAEHGGLDV 75 (274)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHC-----CCeEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence 5777775 44444444 44555 899999988766554322 456777888664311 1257899
Q ss_pred EEecccc
Q 026558 117 VVDKGTL 123 (237)
Q Consensus 117 I~~~~~l 123 (237)
|+.+...
T Consensus 76 vi~~ag~ 82 (274)
T PRK05693 76 LINNAGY 82 (274)
T ss_pred EEECCCC
Confidence 9987654
|
|
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=84.09 E-value=4.7 Score=32.64 Aligned_cols=88 Identities=17% Similarity=0.405 Sum_probs=53.9
Q ss_pred cEEEEccCC-chhHHHH-HHcCCCeEEEEeCCHHHHHH-------------------HHHHcCC-CCCcEEEEcccc---
Q 026558 50 RILIVGCGN-SAFSEGM-VDDGYEDVVNVDISSVVIEA-------------------MMKKYSN-RPQLKYIKMDVR--- 104 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~~-~~~~~~~~~~vD~s~~~~~~-------------------a~~~~~~-~~~~~~~~~d~~--- 104 (237)
+|+-+|+|- |++...+ ++.|..+++.+|.+.-.+.. +++++.. +|++++...+..
T Consensus 32 ~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f~t~ 111 (263)
T COG1179 32 HVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDFITE 111 (263)
T ss_pred cEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhhhCH
Confidence 788888865 8887755 55566689999886544333 3344332 366666555442
Q ss_pred -ccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHh
Q 026558 105 -QMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRV 146 (237)
Q Consensus 105 -~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 146 (237)
++..+-...||+|+. .++.+ .-...++..+.+.
T Consensus 112 en~~~~~~~~~DyvID--aiD~v-------~~Kv~Li~~c~~~ 145 (263)
T COG1179 112 ENLEDLLSKGFDYVID--AIDSV-------RAKVALIAYCRRN 145 (263)
T ss_pred hHHHHHhcCCCCEEEE--chhhh-------HHHHHHHHHHHHc
Confidence 222344568999998 56655 5555555555544
|
|
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.90 E-value=12 Score=32.10 Aligned_cols=93 Identities=16% Similarity=0.229 Sum_probs=54.8
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEcc-----ccc-cccccCCCccEEEec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKMD-----VRQ-MDEFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d-----~~~-~~~~~~~~fD~I~~~ 120 (237)
.+||-.|+|. |..+..+++.... ++++++.+++.++.+++.- . ..++..+ ..+ +.....+.+|+++..
T Consensus 189 ~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~G-a---~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~ 264 (369)
T cd08301 189 STVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFG-V---TEFVNPKDHDKPVQEVIAEMTGGGVDYSFEC 264 (369)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcC-C---ceEEcccccchhHHHHHHHHhCCCCCEEEEC
Confidence 3888888754 5555556665433 7999999999888886531 1 1122111 100 111123368988863
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCC-cEEEEEEc
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTY 158 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 158 (237)
.. ....+..+.+.+++| |++++...
T Consensus 265 ~G-------------~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 265 TG-------------NIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred CC-------------ChHHHHHHHHHhhcCCCEEEEECc
Confidence 21 123566678889996 98887653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.90 E-value=11 Score=30.22 Aligned_cols=72 Identities=13% Similarity=0.300 Sum_probs=45.4
Q ss_pred cEEEEccCCchhHHHH----HHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccc---------cCCCcc
Q 026558 50 RILIVGCGNSAFSEGM----VDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD 115 (237)
+||-.|+ +|.++..+ ++.+. ++++++.++...+.+.+.+.. ..++.++.+|+.+.... .-+..|
T Consensus 3 ~vlVtGa-sg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 80 (263)
T PRK06181 3 VVIITGA-SEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGID 80 (263)
T ss_pred EEEEecC-CcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 5777774 45555544 44555 899999998766655544432 23577888898764321 114689
Q ss_pred EEEecccc
Q 026558 116 SVVDKGTL 123 (237)
Q Consensus 116 ~I~~~~~l 123 (237)
+|+.....
T Consensus 81 ~vi~~ag~ 88 (263)
T PRK06181 81 ILVNNAGI 88 (263)
T ss_pred EEEECCCc
Confidence 99987543
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=83.89 E-value=8.2 Score=36.57 Aligned_cols=97 Identities=16% Similarity=0.252 Sum_probs=66.1
Q ss_pred CcEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-------C------------CCcEEEEccccccc
Q 026558 49 QRILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-------R------------PQLKYIKMDVRQMD 107 (237)
Q Consensus 49 ~~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-------~------------~~~~~~~~d~~~~~ 107 (237)
.+|.-||+|+ | .++..++..|+ .|+.+|.+++.++.+.+++.. . .++.+. .|. .
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~---~ 388 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDY---A 388 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH---H
Confidence 3799999999 4 44455667776 999999999999887765421 0 012211 111 1
Q ss_pred cccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 108 EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 108 ~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.-...|+|+-. +.+.+ +..++++.++-++++|+.++...|.+-
T Consensus 389 --~~~~aDlViEa-v~E~l-------~~K~~vf~~l~~~~~~~~ilasNTSsl 431 (715)
T PRK11730 389 --GFERVDVVVEA-VVENP-------KVKAAVLAEVEQKVREDTILASNTSTI 431 (715)
T ss_pred --HhcCCCEEEec-ccCcH-------HHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 12467888875 44444 888899999999999998887666443
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.84 E-value=10 Score=31.49 Aligned_cols=95 Identities=19% Similarity=0.218 Sum_probs=52.4
Q ss_pred cEEEEccCC-ch-hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--CCCcEE-EEccc-cccccccCCCccEEEecccc
Q 026558 50 RILIVGCGN-SA-FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKY-IKMDV-RQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 50 ~iLdlG~G~-G~-~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~~~~~~-~~~d~-~~~~~~~~~~fD~I~~~~~l 123 (237)
+|+-+|+|. |. ++..+++.++ +|+.++. ++.++..++.--. ...... ..... .+.. .....+|+|+..-.-
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~vilavk~ 78 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPE-ELTGPFDLVILAVKA 78 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHH-HccCCCCEEEEEecc
Confidence 577888887 33 4455666666 8999998 6666665543100 000011 01001 1111 112578988774321
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+...+++.+...+.++..++...
T Consensus 79 ----------~~~~~~~~~l~~~~~~~~~ii~~~ 102 (305)
T PRK12921 79 ----------YQLDAAIPDLKPLVGEDTVIIPLQ 102 (305)
T ss_pred ----------cCHHHHHHHHHhhcCCCCEEEEee
Confidence 345777888888888877665543
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=83.73 E-value=8.7 Score=28.16 Aligned_cols=91 Identities=22% Similarity=0.269 Sum_probs=53.7
Q ss_pred EEEEccCC-chhH-HHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcc-------ccccc--cccCCCccEEEe
Q 026558 51 ILIVGCGN-SAFS-EGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD-------VRQMD--EFQTGSFDSVVD 119 (237)
Q Consensus 51 iLdlG~G~-G~~~-~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d-------~~~~~--~~~~~~fD~I~~ 119 (237)
|+-+|+|. |.+. ..+.+.+. +++.+.-++ .++..+++- +.+...+ ..... ......+|+|+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv 73 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQG-----LTITGPDGDETVQPPIVISAPSADAGPYDLVIV 73 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHHC-----EEEEETTEEEEEEEEEEESSHGHHHSTESEEEE
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhhee-----EEEEecccceecccccccCcchhccCCCcEEEE
Confidence 45677766 4433 33445455 999999887 556555442 1222111 00011 124678999998
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.--- .+....++.+.+.+.++..+++.-.
T Consensus 74 ~vKa----------~~~~~~l~~l~~~~~~~t~iv~~qN 102 (151)
T PF02558_consen 74 AVKA----------YQLEQALQSLKPYLDPNTTIVSLQN 102 (151)
T ss_dssp -SSG----------GGHHHHHHHHCTGEETTEEEEEESS
T ss_pred Eecc----------cchHHHHHHHhhccCCCcEEEEEeC
Confidence 5321 3557789999999999987766553
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.60 E-value=5.8 Score=31.73 Aligned_cols=66 Identities=21% Similarity=0.362 Sum_probs=45.7
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHH-HcCCCCCcEEEEcccccccc---ccCCCccEEEec
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMK-KYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDK 120 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~-~~~~~~~~~~~~~d~~~~~~---~~~~~fD~I~~~ 120 (237)
+++=+|||. | .++..+.+.++ .++.+|.+++.++.... . ..+..+++|..+... ..-..+|+++..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~----~~~~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADE----LDTHVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhh----cceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 567788877 3 34445556666 99999999988877333 3 256888899877542 234678988874
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.35 E-value=7 Score=33.80 Aligned_cols=92 Identities=21% Similarity=0.253 Sum_probs=52.3
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHH-HHHHHHHcCCCCCcEEEE-ccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVV-IEAMMKKYSNRPQLKYIK-MDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~-~~~a~~~~~~~~~~~~~~-~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+||-.|+|. |..+..+++....++++++.+++. .+.+++ +.. ..++. .+........ ..+|+|+....
T Consensus 180 ~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~-lGa---~~~i~~~~~~~v~~~~-~~~D~vid~~G--- 251 (375)
T PLN02178 180 KRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDR-LGA---DSFLVTTDSQKMKEAV-GTMDFIIDTVS--- 251 (375)
T ss_pred CEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHh-CCC---cEEEcCcCHHHHHHhh-CCCcEEEECCC---
Confidence 3788888865 666666666644588999887654 444433 211 11111 1111111111 35888886321
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
....+..+.+.++++|.++....
T Consensus 252 ----------~~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 252 ----------AEHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred ----------cHHHHHHHHHhhcCCCEEEEEcc
Confidence 12356778889999999987653
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.25 E-value=19 Score=30.55 Aligned_cols=72 Identities=15% Similarity=0.269 Sum_probs=45.5
Q ss_pred cEEEEccCCchhHHHHHH----cCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccccc--CCCccEEEecccc
Q 026558 50 RILIVGCGNSAFSEGMVD----DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQ--TGSFDSVVDKGTL 123 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~----~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~--~~~fD~I~~~~~l 123 (237)
+||-.| |+|.++..+++ .++ +|++++.++...+.....+....++.++.+|+.+...+. -..+|+|+.....
T Consensus 12 ~vLVtG-~~GfIG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A~~ 89 (353)
T PLN02896 12 TYCVTG-ATGYIGSWLVKLLLQRGY-TVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVAAS 89 (353)
T ss_pred EEEEEC-CCcHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECCcc
Confidence 899888 57766666554 455 888888776544433333322246788899987653221 1357988876654
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=83.23 E-value=22 Score=30.99 Aligned_cols=103 Identities=12% Similarity=0.117 Sum_probs=57.1
Q ss_pred cEEEEccCC-chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc---cccc-cccc-cCCCccEEEeccc
Q 026558 50 RILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQ-MDEF-QTGSFDSVVDKGT 122 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~---d~~~-~~~~-~~~~fD~I~~~~~ 122 (237)
+||-.|+|. |..+..+++. |...++.+|.++..++.+++.-. . .+... +..+ +... ....+|+|+....
T Consensus 188 ~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga---~-~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G 263 (393)
T TIGR02819 188 TVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGC---E-TVDLSKDATLPEQIEQILGEPEVDCAVDCVG 263 (393)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCC---e-EEecCCcccHHHHHHHHcCCCCCcEEEECCC
Confidence 666677765 5566666665 33346677888888888887421 1 12111 1111 1111 2346899987432
Q ss_pred cce---eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 123 LDS---LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 123 l~~---~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
-.. .+- .........++++.+.+++||++++.-.
T Consensus 264 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 264 FEARGHGHD--GKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred Ccccccccc--ccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 110 000 0001123478889999999999988654
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=83.22 E-value=4.9 Score=35.76 Aligned_cols=87 Identities=15% Similarity=0.224 Sum_probs=49.6
Q ss_pred CcEEEEccCC-chhHHHHH-HcCCCeEE------EEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEec
Q 026558 49 QRILIVGCGN-SAFSEGMV-DDGYEDVV------NVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~-~~~~~~~~------~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~ 120 (237)
++|+-||||+ |.....-+ ..|. .++ ++|......+.|.+. .+ ...+..+. -...|+|+.-
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGv-nVvvglr~~~id~~~~s~~kA~~d-----GF--~v~~~~Ea----~~~ADvVviL 104 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGL-DISYALRKEAIAEKRASWRKATEN-----GF--KVGTYEEL----IPQADLVINL 104 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccc-eeEEeccccccccccchHHHHHhc-----CC--ccCCHHHH----HHhCCEEEEc
Confidence 3899999988 54111001 1122 444 444445555555443 22 22233332 2567999874
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+. .....+.+++...|+||..|.+..
T Consensus 105 lPD----------t~q~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 105 TPD----------KQHSDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred CCh----------HHHHHHHHHHHhhCCCCCEEEecC
Confidence 321 235666799999999999998864
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=83.15 E-value=5 Score=35.88 Aligned_cols=88 Identities=11% Similarity=0.122 Sum_probs=53.3
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
++|+-+|+|. |......+.....+|+.+|.++.....+... .+.+. ++.+. -...|+|++.-.-
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~-----G~~~~--~leel----l~~ADIVI~atGt---- 319 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAME-----GYQVV--TLEDV----VETADIFVTATGN---- 319 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhc-----Cceec--cHHHH----HhcCCEEEECCCc----
Confidence 3899999887 4443333333334899999987655443331 22222 23332 2468999875211
Q ss_pred cCCCChHHHHHHH-HHHHHhcCCCcEEEEEEcCC
Q 026558 128 CGSNSRQNATQML-KEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 128 ~~~~~~~~~~~~l-~~~~~~L~pgG~l~~~~~~~ 160 (237)
..++ .+.+..||||++++-.....
T Consensus 320 ---------~~iI~~e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 320 ---------KDIITLEHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred ---------ccccCHHHHhccCCCcEEEEcCCCc
Confidence 2244 47889999999998876544
|
|
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=83.14 E-value=17 Score=30.35 Aligned_cols=86 Identities=14% Similarity=0.183 Sum_probs=52.5
Q ss_pred cEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceecc
Q 026558 50 RILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~ 128 (237)
+||-.|||. |..+..+++....+++.++.+++..+.+++ +. +.... +.... ....+|+++....
T Consensus 170 ~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~-~g----~~~~~-~~~~~---~~~~vD~vi~~~~------ 234 (329)
T cd08298 170 RLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE-LG----ADWAG-DSDDL---PPEPLDAAIIFAP------ 234 (329)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH-hC----CcEEe-ccCcc---CCCcccEEEEcCC------
Confidence 677777654 444444555544589999988887777744 31 21111 11111 2345888875311
Q ss_pred CCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 129 GSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
....++.+.+.|+++|+++...
T Consensus 235 -------~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 235 -------VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred -------cHHHHHHHHHHhhcCCEEEEEc
Confidence 1246888999999999998754
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.08 E-value=20 Score=30.35 Aligned_cols=93 Identities=15% Similarity=0.198 Sum_probs=54.6
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEE---Eccccc-cccc-cCCCccEEEecc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYI---KMDVRQ-MDEF-QTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~---~~d~~~-~~~~-~~~~fD~I~~~~ 121 (237)
.+||-.|+|. |..+..+++.... .+++++.+++..+.+++.-. . .++ ..+..+ +... ....+|+|+...
T Consensus 174 ~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga--~--~~i~~~~~~~~~~l~~~~~~~~~d~vid~~ 249 (351)
T cd08233 174 DTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGA--T--IVLDPTEVDVVAEVRKLTGGGGVDVSFDCA 249 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC--C--EEECCCccCHHHHHHHHhCCCCCCEEEECC
Confidence 3777777643 4455555555434 78999999988888865311 1 111 111111 1111 234599998742
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.. ...++.+.+.|+++|.++....
T Consensus 250 g~-------------~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 250 GV-------------QATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CC-------------HHHHHHHHHhccCCCEEEEEcc
Confidence 11 2356788899999999887653
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=82.69 E-value=15 Score=31.47 Aligned_cols=97 Identities=14% Similarity=0.242 Sum_probs=61.5
Q ss_pred cEEEEccCC-chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc----ccccc-ccccCCCccEEEeccc
Q 026558 50 RILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM----DVRQM-DEFQTGSFDSVVDKGT 122 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~----d~~~~-~~~~~~~fD~I~~~~~ 122 (237)
+|.-+|||. |-..+.-+.. +..+++++|+++.-+++|++--.. .++.. |+.+. ....++..|.+|..
T Consensus 188 tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT----~~vn~~~~~~vv~~i~~~T~gG~d~~~e~-- 261 (366)
T COG1062 188 TVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGAT----HFVNPKEVDDVVEAIVELTDGGADYAFEC-- 261 (366)
T ss_pred eEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCc----eeecchhhhhHHHHHHHhcCCCCCEEEEc--
Confidence 788888866 5555544443 455999999999999999987432 22222 22211 11334577877552
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchh
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 163 (237)
... ...++..+..+.++|..++.-...+..
T Consensus 262 ~G~-----------~~~~~~al~~~~~~G~~v~iGv~~~~~ 291 (366)
T COG1062 262 VGN-----------VEVMRQALEATHRGGTSVIIGVAGAGQ 291 (366)
T ss_pred cCC-----------HHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 221 236777888888899998877655543
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=82.67 E-value=6.6 Score=33.34 Aligned_cols=96 Identities=17% Similarity=0.131 Sum_probs=59.3
Q ss_pred CcEEEEccC--CchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc-cc-cCCCccEEEeccccc
Q 026558 49 QRILIVGCG--NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD-EF-QTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G--~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~-~~~~fD~I~~~~~l~ 124 (237)
.+||-.|+. -|.+++.+++.....++++--+++-.+.+++.... .-+.+...|+.+.- .. ....+|+|+..-.
T Consensus 144 ~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd-~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG-- 220 (326)
T COG0604 144 ETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGAD-HVINYREEDFVEQVRELTGGKGVDVVLDTVG-- 220 (326)
T ss_pred CEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCC-EEEcCCcccHHHHHHHHcCCCCceEEEECCC--
Confidence 389988853 36777788877533777777777777766655321 11222233332211 12 2346999988422
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
...+....+.|+++|+++..-..
T Consensus 221 ------------~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 221 ------------GDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred ------------HHHHHHHHHHhccCCEEEEEecC
Confidence 44677788999999999886643
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=82.58 E-value=6.5 Score=34.18 Aligned_cols=45 Identities=13% Similarity=0.218 Sum_probs=31.5
Q ss_pred CCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHc
Q 026558 44 VPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKY 90 (237)
Q Consensus 44 ~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~ 90 (237)
+.++. +||-|.+|.......+. .++.+|++||+||..+..++=+.
T Consensus 33 i~~~d-~vl~ItSaG~N~L~yL~-~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 33 IGPDD-RVLTITSAGCNALDYLL-AGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred CCCCC-eEEEEccCCchHHHHHh-cCCceEEEEeCCHHHHHHHHHHH
Confidence 34444 89999765555555544 44569999999999988776554
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.44 E-value=14 Score=31.02 Aligned_cols=92 Identities=18% Similarity=0.249 Sum_probs=54.9
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC---C------CcEEEEccccccccccCCCccEEE
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---P------QLKYIKMDVRQMDEFQTGSFDSVV 118 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~---~------~~~~~~~d~~~~~~~~~~~fD~I~ 118 (237)
+|.=+|+|. | .++..+++.++ .++.+|.++..++..++..... + ++.. ..|..+. ....|+|+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~D~vi 76 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAEA----LADADLIL 76 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHHH----HhCCCEEE
Confidence 577788776 3 34445556666 8999999988887776652110 0 1111 1111111 24579888
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
..-. ......+++.+...++++.+++...
T Consensus 77 ~~v~----------~~~~~~v~~~l~~~~~~~~~vi~~~ 105 (325)
T PRK00094 77 VAVP----------SQALREVLKQLKPLLPPDAPIVWAT 105 (325)
T ss_pred EeCC----------HHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 7432 2456777888888888887666543
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.43 E-value=28 Score=29.15 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=29.2
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKK 89 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~ 89 (237)
+|.-+|+|. | .++..+++.|+ +|+++|.+++.++.++.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~~~~~~~~~~ 44 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGH-EVRLWDADPAAAAAAPAY 44 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCC-eeEEEeCCHHHHHHHHHH
Confidence 578888876 3 45556677776 999999999888876543
|
|
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=82.22 E-value=8.5 Score=32.36 Aligned_cols=92 Identities=15% Similarity=0.215 Sum_probs=54.7
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCe-EEEEeCCHHHHHHHHHHcCCCCCcEEEEcc---cccccc-ccCCCccEEEeccc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYED-VVNVDISSVVIEAMMKKYSNRPQLKYIKMD---VRQMDE-FQTGSFDSVVDKGT 122 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~-~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d---~~~~~~-~~~~~fD~I~~~~~ 122 (237)
.+||-.|+|. |..+..+++..... +++++-++...+.+++.- . ..++..+ ...+.. .....+|+|+....
T Consensus 161 ~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g-~---~~~~~~~~~~~~~~~~~~~~~~~d~vld~~g 236 (343)
T cd08236 161 DTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELG-A---DDTINPKEEDVEKVRELTEGRGADLVIEAAG 236 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-C---CEEecCccccHHHHHHHhCCCCCCEEEECCC
Confidence 3788888655 55666666654345 999998888887775431 1 1222111 111111 12345999986411
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
....+..+.++|+++|+++...
T Consensus 237 -------------~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 237 -------------SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred -------------CHHHHHHHHHHhhcCCEEEEEc
Confidence 1235677899999999987764
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=82.15 E-value=9.7 Score=36.06 Aligned_cols=98 Identities=19% Similarity=0.198 Sum_probs=65.8
Q ss_pred CcEEEEccCC-c-hhHHHHH-HcCCCeEEEEeCCHHHHHHHHHHcCC-------C------------CCcEEEEcccccc
Q 026558 49 QRILIVGCGN-S-AFSEGMV-DDGYEDVVNVDISSVVIEAMMKKYSN-------R------------PQLKYIKMDVRQM 106 (237)
Q Consensus 49 ~~iLdlG~G~-G-~~~~~~~-~~~~~~~~~vD~s~~~~~~a~~~~~~-------~------------~~~~~~~~d~~~~ 106 (237)
.+|.-||+|+ | .++..++ ..|. .|+.+|.+++.++.+.+++.. . .++++. .|.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~--- 384 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDY--- 384 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CCh---
Confidence 3799999998 4 3444455 5566 999999999999887655421 0 012221 111
Q ss_pred ccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 107 DEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 107 ~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
. .-...|+|+-. +.+.+ +-.++++.++-++++|+.++...|.+-+
T Consensus 385 ~--~~~~aDlViEa-v~E~~-------~~K~~v~~~le~~~~~~~ilasnTS~l~ 429 (708)
T PRK11154 385 R--GFKHADVVIEA-VFEDL-------ALKQQMVAEVEQNCAPHTIFASNTSSLP 429 (708)
T ss_pred H--HhccCCEEeec-ccccH-------HHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence 1 12457888875 44444 7888999999999999988877664433
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.15 E-value=23 Score=27.98 Aligned_cols=72 Identities=19% Similarity=0.334 Sum_probs=46.7
Q ss_pred cEEEEccCCchhHHHH----HHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccc----c-----CCCcc
Q 026558 50 RILIVGCGNSAFSEGM----VDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF----Q-----TGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~----~-----~~~fD 115 (237)
++|-.|+ +|.++..+ ++++. +|++++.++...+...+.... ..++.++.+|+.+.... . -+..|
T Consensus 8 ~vlItG~-sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 85 (241)
T PRK07454 8 RALITGA-SSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGCPD 85 (241)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 7888885 55555444 45565 899999988766655544432 23677889999765321 1 24689
Q ss_pred EEEecccc
Q 026558 116 SVVDKGTL 123 (237)
Q Consensus 116 ~I~~~~~l 123 (237)
+++.+...
T Consensus 86 ~lv~~ag~ 93 (241)
T PRK07454 86 VLINNAGM 93 (241)
T ss_pred EEEECCCc
Confidence 99987643
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=82.12 E-value=3.4 Score=37.39 Aligned_cols=93 Identities=12% Similarity=0.248 Sum_probs=59.5
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC---------CC----------CCcEEEEcccccccc
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS---------NR----------PQLKYIKMDVRQMDE 108 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~---------~~----------~~~~~~~~d~~~~~~ 108 (237)
+|--||+|+ | .+...++..|+ .|+..|.+++.++.+.+++. +. .++.+. .|...
T Consensus 7 kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~~--- 81 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASAGH-QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TDLHA--- 81 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CCHHH---
Confidence 688899987 4 44455667776 99999999999987755431 10 012221 12211
Q ss_pred ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 109 ~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+ ...|+|+.. +.+.+ +....++.++...++++.++...|
T Consensus 82 l--~~aDlVIEa-v~E~~-------~vK~~vf~~l~~~~~~~~IlasnT 120 (503)
T TIGR02279 82 L--ADAGLVIEA-IVENL-------EVKKALFAQLEELCPADTIIASNT 120 (503)
T ss_pred h--CCCCEEEEc-CcCcH-------HHHHHHHHHHHhhCCCCeEEEECC
Confidence 2 367988875 33333 667778888888888887655444
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.06 E-value=6.8 Score=35.68 Aligned_cols=77 Identities=14% Similarity=0.275 Sum_probs=60.0
Q ss_pred cEEEEccCCchhHHHHHHc----CCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEcccccccc----ccCCCccEEE
Q 026558 50 RILIVGCGNSAFSEGMVDD----GYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDE----FQTGSFDSVV 118 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~----~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~----~~~~~fD~I~ 118 (237)
+||-=| |+|+++..++++ +..+++.+|.++..+......+.. ...+.+..+|+.+... +.+-+.|+|+
T Consensus 252 ~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~Vf 330 (588)
T COG1086 252 TVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDIVF 330 (588)
T ss_pred EEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCceEE
Confidence 677666 788888877664 466999999999998888877754 2577899999988542 4566899999
Q ss_pred eccccceec
Q 026558 119 DKGTLDSLL 127 (237)
Q Consensus 119 ~~~~l~~~~ 127 (237)
-...+-|++
T Consensus 331 HAAA~KHVP 339 (588)
T COG1086 331 HAAALKHVP 339 (588)
T ss_pred EhhhhccCc
Confidence 998888875
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.01 E-value=8.1 Score=31.09 Aligned_cols=72 Identities=18% Similarity=0.326 Sum_probs=47.4
Q ss_pred cEEEEccCCchhHHH----HHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccE
Q 026558 50 RILIVGCGNSAFSEG----MVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~----~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (237)
+||-.|+ +|.++.. +++.|. +++.++.+++.++...+......++.++.+|+.+.... ..+..|+
T Consensus 4 ~vlItGa-s~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~ 81 (257)
T PRK07024 4 KVFITGA-SSGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPDV 81 (257)
T ss_pred EEEEEcC-CcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence 6777775 4444444 445565 89999999887776666553323678889999764311 1245899
Q ss_pred EEecccc
Q 026558 117 VVDKGTL 123 (237)
Q Consensus 117 I~~~~~l 123 (237)
++.+...
T Consensus 82 lv~~ag~ 88 (257)
T PRK07024 82 VIANAGI 88 (257)
T ss_pred EEECCCc
Confidence 9987654
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.93 E-value=10 Score=32.22 Aligned_cols=72 Identities=17% Similarity=0.260 Sum_probs=46.9
Q ss_pred cEEEEccCCchhHHH----HHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccc---------cCCCcc
Q 026558 50 RILIVGCGNSAFSEG----MVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~----~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD 115 (237)
.||-.|++. .++.. +++.|. +++.++.++..++...+.+.. ..++.++.+|+.+.... .-+..|
T Consensus 10 ~vlITGas~-gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~iD 87 (334)
T PRK07109 10 VVVITGASA-GVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGPID 87 (334)
T ss_pred EEEEECCCC-HHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCCCC
Confidence 678888544 44443 455665 899999998877766655532 23677888898764321 124789
Q ss_pred EEEecccc
Q 026558 116 SVVDKGTL 123 (237)
Q Consensus 116 ~I~~~~~l 123 (237)
+++.+...
T Consensus 88 ~lInnAg~ 95 (334)
T PRK07109 88 TWVNNAMV 95 (334)
T ss_pred EEEECCCc
Confidence 99887643
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.68 E-value=20 Score=28.46 Aligned_cols=72 Identities=19% Similarity=0.303 Sum_probs=45.1
Q ss_pred cEEEEccCCchhHHHHH----HcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccc---------cCCCcc
Q 026558 50 RILIVGCGNSAFSEGMV----DDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~----~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD 115 (237)
++|-.| |+|.++..++ +.+. ++++++.++...+...+.+.. ..++.++..|+.+.... .-+..|
T Consensus 8 ~vlItG-asg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 85 (250)
T PRK07774 8 VAIVTG-AAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGGID 85 (250)
T ss_pred EEEEEC-CCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCC
Confidence 688777 4555555544 4555 899999987666555444321 23566788888765321 114689
Q ss_pred EEEecccc
Q 026558 116 SVVDKGTL 123 (237)
Q Consensus 116 ~I~~~~~l 123 (237)
+|+.+...
T Consensus 86 ~vi~~ag~ 93 (250)
T PRK07774 86 YLVNNAAI 93 (250)
T ss_pred EEEECCCC
Confidence 99987653
|
|
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=81.68 E-value=9 Score=32.15 Aligned_cols=94 Identities=11% Similarity=0.114 Sum_probs=53.2
Q ss_pred cEEEEccCC-chhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc-cccccCCCccEEEeccccce
Q 026558 50 RILIVGCGN-SAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-MDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~~~~~--~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~~~~~~~fD~I~~~~~l~~ 125 (237)
+||-.|+|. |..+..+++. |...+++++.+++..+.+++.-.. .-+.....+... +. -....+|+|+....
T Consensus 163 ~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~-~~i~~~~~~~~~~~~-~~g~~~d~vid~~g--- 237 (339)
T PRK10083 163 VALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGAD-WVINNAQEPLGEALE-EKGIKPTLIIDAAC--- 237 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCc-EEecCccccHHHHHh-cCCCCCCEEEECCC---
Confidence 788888654 5555566662 544688899999888887764211 000011111111 11 01123457765311
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
....+..+.+.|+++|+++....
T Consensus 238 ----------~~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 238 ----------HPSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred ----------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 02357778899999999987653
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.38 E-value=22 Score=27.88 Aligned_cols=67 Identities=18% Similarity=0.284 Sum_probs=42.0
Q ss_pred cEEEEccCCchhHH----HHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc-------ccCCCccEEE
Q 026558 50 RILIVGCGNSAFSE----GMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE-------FQTGSFDSVV 118 (237)
Q Consensus 50 ~iLdlG~G~G~~~~----~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~-------~~~~~fD~I~ 118 (237)
+||-.|+ +|.++. .+++.|. ++++++.++...+.+++. .++.+..+|+.+... +..+.+|+|+
T Consensus 3 ~vlItG~-sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~----~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi 76 (225)
T PRK08177 3 TALIIGA-SRGLGLGLVDRLLERGW-QVTATVRGPQQDTALQAL----PGVHIEKLDMNDPASLDQLLQRLQGQRFDLLF 76 (225)
T ss_pred EEEEeCC-CchHHHHHHHHHHhCCC-EEEEEeCCCcchHHHHhc----cccceEEcCCCCHHHHHHHHHHhhcCCCCEEE
Confidence 5777775 454444 4455565 899999887655544332 356777788866431 2235799999
Q ss_pred eccc
Q 026558 119 DKGT 122 (237)
Q Consensus 119 ~~~~ 122 (237)
.+..
T Consensus 77 ~~ag 80 (225)
T PRK08177 77 VNAG 80 (225)
T ss_pred EcCc
Confidence 8754
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.29 E-value=18 Score=29.41 Aligned_cols=67 Identities=18% Similarity=0.323 Sum_probs=43.4
Q ss_pred cEEEEccCCchhHHHH----HHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccE
Q 026558 50 RILIVGCGNSAFSEGM----VDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (237)
.||-.|+ +|.++..+ ++.|+ ++++++.++..++.... .++.++.+|+.+.... ..+..|+
T Consensus 5 ~vlItGa-sggiG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~-----~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~ 77 (273)
T PRK06182 5 VALVTGA-SSGIGKATARRLAAQGY-TVYGAARRVDKMEDLAS-----LGVHPLSLDVTDEASIKAAVDTIIAEEGRIDV 77 (273)
T ss_pred EEEEECC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh-----CCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence 6887885 44445444 44555 89999988876654432 2477888898764321 1247899
Q ss_pred EEecccc
Q 026558 117 VVDKGTL 123 (237)
Q Consensus 117 I~~~~~l 123 (237)
++.+...
T Consensus 78 li~~ag~ 84 (273)
T PRK06182 78 LVNNAGY 84 (273)
T ss_pred EEECCCc
Confidence 9987654
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=81.28 E-value=10 Score=28.32 Aligned_cols=92 Identities=22% Similarity=0.270 Sum_probs=55.0
Q ss_pred EEEEccCCchhH--HHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcEE-----EEccccccccccCCCccEEEec
Q 026558 51 ILIVGCGNSAFS--EGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKY-----IKMDVRQMDEFQTGSFDSVVDK 120 (237)
Q Consensus 51 iLdlG~G~G~~~--~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~-----~~~d~~~~~~~~~~~fD~I~~~ 120 (237)
|.-+|+|.+..+ ..++.+++ +|+....+++.++..++.-.+ .+.+.+ ...|..+. -...|+|+..
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~-~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a----~~~ad~Iiia 76 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGH-EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEA----LEDADIIIIA 76 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTE-EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHH----HTT-SEEEE-
T ss_pred EEEECcCHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHH----hCcccEEEec
Confidence 566777775433 23455665 999999999888887776531 122111 22233222 2456888875
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
-+ ....+.+++++...++++-.++..+
T Consensus 77 vP----------s~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 77 VP----------SQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp S-----------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred cc----------HHHHHHHHHHHhhccCCCCEEEEec
Confidence 33 2456889999999998777766643
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=81.01 E-value=27 Score=29.29 Aligned_cols=91 Identities=21% Similarity=0.273 Sum_probs=52.2
Q ss_pred cEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceecc
Q 026558 50 RILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~ 128 (237)
+||-.|||. |..+..+++....+++.++.+++..+.+++ +.. . .++...-........+.+|+|+....-
T Consensus 172 ~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~-~g~-~--~vi~~~~~~~~~~~~~~~d~v~~~~g~----- 242 (337)
T cd05283 172 RVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALK-LGA-D--EFIATKDPEAMKKAAGSLDLIIDTVSA----- 242 (337)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cCC-c--EEecCcchhhhhhccCCceEEEECCCC-----
Confidence 666677644 555555555544489999999888888754 311 1 111111011100113568888853211
Q ss_pred CCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 129 GSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...+..+.+.|+++|.++...
T Consensus 243 --------~~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 243 --------SHDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred --------cchHHHHHHHhcCCCEEEEEe
Confidence 124677889999999988764
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.00 E-value=16 Score=30.93 Aligned_cols=75 Identities=15% Similarity=0.303 Sum_probs=41.1
Q ss_pred CcEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHH-----------------------HHHHHcCCCCCcEEEEccc
Q 026558 49 QRILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIE-----------------------AMMKKYSNRPQLKYIKMDV 103 (237)
Q Consensus 49 ~~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~-----------------------~a~~~~~~~~~~~~~~~d~ 103 (237)
.+||-||+|. | .++..++-.|+.++..+|++.--+. ...++..+ ..+.++..++
T Consensus 41 ~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~-~~v~~h~~kI 119 (422)
T KOG2015|consen 41 CKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPG-CVVVPHRQKI 119 (422)
T ss_pred CcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCC-cEEeeeecch
Confidence 3899998864 3 3334444445556666666432222 22222211 1345667777
Q ss_pred cccccccCCCccEEEecccccee
Q 026558 104 RQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 104 ~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+.+.--=.+||+|++ .|+.+
T Consensus 120 qd~~~~FYk~F~~iic--GLDsI 140 (422)
T KOG2015|consen 120 QDKPISFYKRFDLIIC--GLDSI 140 (422)
T ss_pred hcCCHHHHhhhceEEe--cccch
Confidence 7765211357999999 56666
|
|
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=80.98 E-value=17 Score=30.20 Aligned_cols=92 Identities=13% Similarity=0.165 Sum_probs=54.9
Q ss_pred CcEEEEcc-CC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEE-ccc--cccccccCCCccEEEecccc
Q 026558 49 QRILIVGC-GN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK-MDV--RQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~-G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~-~d~--~~~~~~~~~~fD~I~~~~~l 123 (237)
.+||-.|+ |. |..+..+++....+++.++.+++..+.+++.-. . .+.. .+. ..........+|+|+...
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~--~--~v~~~~~~~~~~~~~~~~~~~d~vld~~-- 221 (326)
T cd08289 148 GPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKLGA--K--EVIPREELQEESIKPLEKQRWAGAVDPV-- 221 (326)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCC--C--EEEcchhHHHHHHHhhccCCcCEEEECC--
Confidence 37888886 32 555566666544589999999988888854311 1 1111 111 111112234688887531
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
. ...+..+.+.|+++|+++....
T Consensus 222 ----------g--~~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 222 ----------G--GKTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred ----------c--HHHHHHHHHHhhcCCEEEEEee
Confidence 1 1356788999999999987753
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=80.97 E-value=15 Score=32.37 Aligned_cols=91 Identities=12% Similarity=0.168 Sum_probs=55.1
Q ss_pred cEEEEccCCchhHHHHHH----cCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc---ccCCCccEEEeccc
Q 026558 50 RILIVGCGNSAFSEGMVD----DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGT 122 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~----~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~I~~~~~ 122 (237)
+|+-+|+ |..+..+++ .+. .++.+|.+++.++.+++.. .+.++.+|..+... ..-..+|.|++...
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~-~v~vid~~~~~~~~~~~~~----~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~ 74 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENN-DVTVIDTDEERLRRLQDRL----DVRTVVGNGSSPDVLREAGAEDADLLIAVTD 74 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhc----CEEEEEeCCCCHHHHHHcCCCcCCEEEEecC
Confidence 4666666 555555544 344 8999999999888777642 56788888876432 22357888877421
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.......+..+.+.+.|.-.+++..
T Consensus 75 ----------~~~~n~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 75 ----------SDETNMVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred ----------ChHHHHHHHHHHHHhcCCCeEEEEE
Confidence 1233444555566664554444443
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.82 E-value=3.6 Score=37.22 Aligned_cols=94 Identities=13% Similarity=0.229 Sum_probs=61.2
Q ss_pred CcEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-------CC------------CcEEEEccccccc
Q 026558 49 QRILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-------RP------------QLKYIKMDVRQMD 107 (237)
Q Consensus 49 ~~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-------~~------------~~~~~~~d~~~~~ 107 (237)
.+|--||+|+ | .++..++..|+ .|+..|.+++.++.+.+++.. .. ++.+. .|...
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~-~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~~-- 83 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGH-TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EALAD-- 83 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH--
Confidence 3788899987 4 45556677777 999999999999987544420 01 12221 12211
Q ss_pred cccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 108 EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 108 ~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+ ...|+|+.. +.+.. +....++.++.++++++.++...+
T Consensus 84 -~--~~aDlViEa-v~E~~-------~vK~~vf~~l~~~~~~~ailasnt 122 (507)
T PRK08268 84 -L--ADCDLVVEA-IVERL-------DVKQALFAQLEAIVSPDCILATNT 122 (507)
T ss_pred -h--CCCCEEEEc-CcccH-------HHHHHHHHHHHhhCCCCcEEEECC
Confidence 2 367999875 33333 667778888888888887775444
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=80.53 E-value=29 Score=30.39 Aligned_cols=102 Identities=18% Similarity=0.205 Sum_probs=56.0
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--C-------------CCcEEEEccccccccccCC
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--R-------------PQLKYIKMDVRQMDEFQTG 112 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~-------------~~~~~~~~d~~~~~~~~~~ 112 (237)
+|--+|+|. | ..+..+++.|+ +|+++|.++..++..++.... . .++.+ ..|..+. -.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~-~~~~~~~----~~ 75 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRA-TTDYEDA----IR 75 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE-ECCHHHH----Hh
Confidence 466688886 3 34445566777 899999999888776542210 0 01111 1111111 24
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
..|+|+..-.-..-..+..+.......++.+...+++|..++..+
T Consensus 76 ~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 76 DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 578887743211100011122456777788888888887666544
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.18 E-value=15 Score=33.05 Aligned_cols=96 Identities=10% Similarity=0.111 Sum_probs=57.7
Q ss_pred cEEEEccCC--chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 50 ~iLdlG~G~--G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
+|--||.|. +.++..++++|+ +|++.|.+++.++...+.... ..++. ...+..++. -.-...|+|+..-+
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~i~-~~~s~~e~v-~~l~~~d~Iil~v~---- 75 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKKAKEGNTRVK-GYHTLEELV-NSLKKPRKVILLIK---- 75 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhhhhcCCcce-ecCCHHHHH-hcCCCCCEEEEEeC----
Confidence 456677776 355666777887 999999999998877664321 01111 122322221 01124686665311
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+.+....+++.+...|++|-+++-..
T Consensus 76 -----~~~~v~~vi~~l~~~L~~g~iIID~g 101 (470)
T PTZ00142 76 -----AGEAVDETIDNLLPLLEKGDIIIDGG 101 (470)
T ss_pred -----ChHHHHHHHHHHHhhCCCCCEEEECC
Confidence 23567788888999999887665443
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.05 E-value=28 Score=27.61 Aligned_cols=53 Identities=17% Similarity=0.390 Sum_probs=34.9
Q ss_pred cEEEEccCCchhHHHH----HHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc
Q 026558 50 RILIVGCGNSAFSEGM----VDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD 107 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~ 107 (237)
.+|-.|+ +|.++..+ +++|. +++.++.+++.++...+.. .++.++.+|+.+..
T Consensus 3 ~vlItGa-s~giG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~D~~~~~ 59 (240)
T PRK06101 3 AVLITGA-TSGIGKQLALDYAKQGW-QVIACGRNQSVLDELHTQS---ANIFTLAFDVTDHP 59 (240)
T ss_pred EEEEEcC-CcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhc---CCCeEEEeeCCCHH
Confidence 5676775 45555444 45565 8999999987766554432 35778888987643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 237 | ||||
| 2pxx_A | 215 | Human Putative Methyltransferase Mgc2408 Length = 2 | 2e-22 |
| >pdb|2PXX|A Chain A, Human Putative Methyltransferase Mgc2408 Length = 215 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 7e-54
Identities = 70/186 (37%), Positives = 101/186 (54%), Gaps = 13/186 (6%)
Query: 9 AYGEPWYWDNRYAHE--SGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMV 66
Y E YWD RY S P+DW+ + S L++ + RIL++GCGNSA S +
Sbjct: 3 GYREVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPE-DRILVLGCGNSALSYELF 61
Query: 67 DDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126
G+ +V +VD SSVV+ AM Y++ PQL++ MDVR++D F + SFD V++KGTLD+L
Sbjct: 62 LGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLD-FPSASFDVVLEKGTLDAL 120
Query: 127 LCG--------SNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGML-RDSCSWNIK 177
L G S Q+L EV RVL G +I +T AP +R + W+++
Sbjct: 121 LAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAYYGWSLR 180
Query: 178 LHVIEK 183
Sbjct: 181 HATYGS 186
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 2e-15
Identities = 28/155 (18%), Positives = 52/155 (33%), Gaps = 10/155 (6%)
Query: 12 EPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYE 71
P + +N A LI P +IL GCG + G+
Sbjct: 12 NPAHSENYAQRWRNLAAAGNDIYGEARLIDAMAP-RGAKILDAGCGQGRIGGYLSKQGH- 69
Query: 72 DVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSN 131
DV+ D+ ++I+ + + P+ +++ D+ FD +V G + L
Sbjct: 70 DVLGTDLDPILIDYAKQDF---PEARWVVGDLSVDQ-ISETDFDLIVSAGNVMGFL---- 121
Query: 132 SRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLG 166
+ L + R L G ++ + G
Sbjct: 122 AEDGREPALANIHRALGADGRAVIGFGAGRGWVFG 156
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 4e-14
Identities = 36/153 (23%), Positives = 56/153 (36%), Gaps = 18/153 (11%)
Query: 12 EPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSH---HQRILIVGCGNSAFSEGMVDD 68
E W+ + E P W Q + PLI V + R L+ GCG M
Sbjct: 32 EEGGWEKCWEEEITP--WDQGRAT--PLIVHLVDTSSLPLGRALVPGCGGGHDVVAMASP 87
Query: 69 GYEDVVNVDISSVVIEAMMKKYSNRPQ---LKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125
VV +DIS + + Y + P+ ++K DV T FD + D +
Sbjct: 88 ER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP--TELFDLIFDYVFFCA 144
Query: 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158
+ + K ++ +LK G I + Y
Sbjct: 145 I-----EPEMRPAWAKSMYELLKPDGELITLMY 172
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 2e-13
Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 11/147 (7%)
Query: 15 YWDNRYA--HESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYED 72
+ + + ++ + +L PL+ Y+ ++L + CG FS + D G+E
Sbjct: 5 EYYRVFPTYTDINSQEYRSRIETLEPLLMKYMKKR-GKVLDLACGVGGFSFLLEDYGFE- 62
Query: 73 VVNVDISSVVIE-AMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSN 131
VV VDIS +I A S +++I D R++ F+ +FD V+ ++
Sbjct: 63 VVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS-FEDKTFDYVIFIDSIVHF----- 116
Query: 132 SRQNATQMLKEVWRVLKDKGVYILVTY 158
Q+ KEV RVLK G +I+
Sbjct: 117 EPLELNQVFKEVRRVLKPSGKFIMYFT 143
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 3e-13
Identities = 29/204 (14%), Positives = 76/204 (37%), Gaps = 21/204 (10%)
Query: 1 MTMGTTTQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSA 60
M++ Y + +++ +Y+ + + L K+ + + +L +GCG
Sbjct: 1 MSL--KENKYDDKHFFE-QYSQMPRSKEGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGW 57
Query: 61 FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDK 120
+ G + V+ +D+S ++ K+ + P + Y + + + + +++ V+
Sbjct: 58 HCIYAAEHGAKKVLGIDLSERMLTE-AKRKTTSPVVCYEQKAIEDI-AIEPDAYNVVLSS 115
Query: 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRD--------SC 172
L + + + K+V+ LK G +I P++ +D
Sbjct: 116 LALHYI-------ASFDDICKKVYINLKSSGSFIFSV-EHPVFTADGRQDWYTDETGNKL 167
Query: 173 SWNIKLHVIEKLVVEEKSGHPIWE 196
W + + E + G + +
Sbjct: 168 HWPVDRYFNESMRTSHFLGEDVQK 191
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 3e-13
Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 20/153 (13%)
Query: 15 YWDNR---YAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYE 71
WD+ + S ++ P + YV +L VGCG+ + + GY+
Sbjct: 19 KWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKE-AEVLDVGCGDGYGTYKLSRTGYK 77
Query: 72 DVVNVDISSVVIEAMM---KKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128
V VDIS E M+ K+ P L +IK D+ + F+ F++++ +L+
Sbjct: 78 -AVGVDIS----EVMIQKGKERGEGPDLSFIKGDLSSLP-FENEQFEAIMAINSLEWT-- 129
Query: 129 GSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161
+ + L E+ RVLK G + G
Sbjct: 130 -----EEPLRALNEIKRVLKSDGYACIAILGPT 157
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 5e-13
Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 15/167 (8%)
Query: 29 WYQKYPSLAPLIKLYVPSHH-QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIE-AM 86
+ P L +K S+ + +L G G + + ++IS + ++ A
Sbjct: 4 TIIRQPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAE 63
Query: 87 MKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRV 146
N +L K D+R++ F+ S V GT+ + + + + + E+ RV
Sbjct: 64 NFSRENNFKLNISKGDIRKLP-FKDESMSFVYSYGTIFHM-----RKNDVKEAIDEIKRV 117
Query: 147 LKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVIEKLVVEEKSGHP 193
LK G+ + R K+ E L +E
Sbjct: 118 LKPGGLACINFLTTKDERYNK-------GEKIGEGEFLQLERGEKVI 157
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 1e-12
Identities = 19/157 (12%), Positives = 50/157 (31%), Gaps = 15/157 (9%)
Query: 5 TTTQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEG 64
++AY G LI+ + IL VG G ++
Sbjct: 4 DVSKAYSS---PTFDAEALLG--TVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGH 58
Query: 65 MVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124
+ G+ + ++ ++ ++E + + P + + + + + ++
Sbjct: 59 LASLGH-QIEGLEPATRLVELARQTH---PSVTFHHGTITDLS-DSPKRWAGLL---AWY 110
Query: 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161
SL+ L + ++D G ++ + P
Sbjct: 111 SLIHMGPGELPD--ALVALRMAVEDGGGLLMSFFSGP 145
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 2e-12
Identities = 26/146 (17%), Positives = 58/146 (39%), Gaps = 16/146 (10%)
Query: 14 WYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDV 73
Y+D Y + + + K +R+L + CG + + + GY +V
Sbjct: 10 EYYDTIYRRRIERVKAEIDF--VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EV 66
Query: 74 VNVDISSVVIE-AMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGS-- 130
V +D+ ++ A K ++++++ DV ++ FD+V + +
Sbjct: 67 VGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF--KNEFDAVT-------MFFSTIM 117
Query: 131 -NSRQNATQMLKEVWRVLKDKGVYIL 155
++ ++ +V LK GV+I
Sbjct: 118 YFDEEDLRKLFSKVAEALKPGGVFIT 143
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 3e-12
Identities = 35/197 (17%), Positives = 70/197 (35%), Gaps = 31/197 (15%)
Query: 15 YWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVV 74
D Y + ++ + + + +K+ P + L +GCGN S + +GY DV
Sbjct: 5 IRDENYFTD--KYELTRTHSEVLEAVKVVKP---GKTLDLGCGNGRNSLYLAANGY-DVD 58
Query: 75 NVDISSVVIE--AMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNS 132
D +++ I +K N L +D+ + +D ++ L L
Sbjct: 59 AWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF--DRQYDFILSTVVLMFL-----E 111
Query: 133 RQNATQMLKEVWRVLKDKGVYILVTY-----------GAPIYRLGMLRDSCS-WNIKLHV 180
+ ++ + R K G ++V ++ G LR W +
Sbjct: 112 AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWER-VKY 170
Query: 181 IE---KLVVEEKSGHPI 194
E +L + +G+ I
Sbjct: 171 NEDVGELHRTDANGNRI 187
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 1e-11
Identities = 28/155 (18%), Positives = 61/155 (39%), Gaps = 13/155 (8%)
Query: 13 PWYWDNRYAH--ESGPFDWYQKYPSLAPLIKLYVPSH-HQRILIVGCGNSAFSEGMVDDG 69
Y D A + D + + + H R+L V CG S +V++G
Sbjct: 20 DQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEG 79
Query: 70 YEDVVNVDISSVVIE-AMMKKYSNRPQLKYIKMDVRQMDEFQ-------TGSFDSVVDKG 121
+ V +VD S +++ A+ ++++ R + + K + + + FD+V+ G
Sbjct: 80 F-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLG 138
Query: 122 T-LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155
L + LK + +++ G+ ++
Sbjct: 139 NSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 173
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 3e-11
Identities = 28/212 (13%), Positives = 64/212 (30%), Gaps = 32/212 (15%)
Query: 15 YWD-NRYAHESGPFD----WYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG 69
Y R P+ +++ L L +GC AF+E +
Sbjct: 14 YQSLERELANDDPWRLDDNPFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC 73
Query: 70 YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCG 129
+ + +D+ I ++ + + D+ + FD +V + +L
Sbjct: 74 -KRLTVIDVMPRAIGRACQRTKRWSHISWAATDI--LQFSTAELFDLIV----VAEVLYY 126
Query: 130 SNSRQNATQMLKEVWRVLKDKGVYILVT--------YGAPI---YRLGMLRDSCSWNIKL 178
+ + ++L G + + +G + +L ++ L
Sbjct: 127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWGHVAGAETVITILTEA------L 180
Query: 179 HVIEKLVVEEKSGHPIWELTNPVPLENDGRSV 210
+E++ + +S L N RS
Sbjct: 181 TEVERVQCQGQSADEDCLLAR---FRNPERSS 209
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 59.7 bits (144), Expect = 6e-11
Identities = 26/178 (14%), Positives = 54/178 (30%), Gaps = 11/178 (6%)
Query: 15 YWDNRYAHESGPFDWYQKYPSL-----APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG 69
YW A SG + I R L G G ++ ++
Sbjct: 56 YWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKL 115
Query: 70 YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCG 129
Y ++ ++E ++ + P K+I + ++D +V + T L
Sbjct: 116 YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETAT-LPPNTYDLIVIQWTAIYL--- 171
Query: 130 SNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVIEKLVVE 187
+ + + K + L G + R + ++ S ++L E
Sbjct: 172 --TDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNE 227
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 8e-11
Identities = 28/148 (18%), Positives = 61/148 (41%), Gaps = 13/148 (8%)
Query: 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE 108
R+L +G G +S + + G+E VV VD S + M++ + ++ +
Sbjct: 56 CRVLDLGGGTGKWSLFLQERGFE-VVLVDPS----KEMLEVAREKGVKNVVEAKAEDL-P 109
Query: 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGML 168
F +G+F++V+ G + S + +N + E+ RVL G ++ T L +
Sbjct: 110 FPSGAFEAVLALGDVLSYV------ENKDKAFSEIRRVLVPDG-LLIATVDNFYTFLQQM 162
Query: 169 RDSCSWNIKLHVIEKLVVEEKSGHPIWE 196
+ +W+ ++ + +
Sbjct: 163 IEKDAWDQITRFLKTQTTSVGTTLFSFN 190
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 1e-10
Identities = 23/165 (13%), Positives = 51/165 (30%), Gaps = 26/165 (15%)
Query: 1 MTMGTTTQAYGEPWY------WDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIV 54
M + T + +D + + + LA L++ + P +L V
Sbjct: 1 MAHSSATAGPQADYSGEIAELYDLVHQGKGKDYHREAAD--LAALVRRHSP-KAASLLDV 57
Query: 55 GCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSF 114
CG + D V +++S+ ++ ++ P D+R + F
Sbjct: 58 ACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRN---PDAVLHHGDMRDFSLGRR--F 111
Query: 115 DSVVDKGTLDSLLCGS----NSRQNATQMLKEVWRVLKDKGVYIL 155
+V + S + L+ + GV ++
Sbjct: 112 SAVT-------CMFSSIGHLAGQAELDAALERFAAHVLPDGVVVV 149
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 1e-10
Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 12/141 (8%)
Query: 15 YWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVV 74
+D Y + +A L++ P +L V CG E + D
Sbjct: 11 VYDLFYLGRGKDYAAEASD--IADLVRSRTP-EASSLLDVACGTGTHLEHFTKEFG-DTA 66
Query: 75 NVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQ 134
+++S ++ K+ P + D+R + F +VV S+ + +
Sbjct: 67 GLELSEDMLTHARKRL---PDATLHQGDMRDFRLGRK--FSAVVS--MFSSVGY-LKTTE 118
Query: 135 NATQMLKEVWRVLKDKGVYIL 155
+ L+ GV ++
Sbjct: 119 ELGAAVASFAEHLEPGGVVVV 139
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 2e-10
Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 21/143 (14%)
Query: 15 YWDNRYAHESGPFDWYQKYPSLAPLIKL--YVPSHHQRILIVGCGNSAFSEGMVDDGYED 72
++ + ++ P A L K +P+ +IL +GCG +E M+ G+ D
Sbjct: 16 FYRGNAT------AYAERQPRSATLTKFLGELPAG-AKILELGCGAGYQAEAMLAAGF-D 67
Query: 73 VVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNS 132
V D S + + S R M Q+D ++D+V L +
Sbjct: 68 VDATDGS----PELAAEASRRLGRPVRTMLFHQLDA--IDAYDAVWAHACLLHV-----P 116
Query: 133 RQNATQMLKEVWRVLKDKGVYIL 155
R +LK +WR LK G++
Sbjct: 117 RDELADVLKLIWRALKPGGLFYA 139
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 5e-10
Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 17/142 (11%)
Query: 15 YWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVV 74
D Y S D+ + L + CG +E + +
Sbjct: 15 RADVDYKKWS---DFIIE------KCVENNL-VFDDYLDLACGTGNLTENLCPKFK-NTW 63
Query: 75 NVDISSVVIE-AMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSR 133
VD+S ++ A K S + + D+ ++ + FD +
Sbjct: 64 AVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRK--FDLIT---CCLDSTNYIIDS 118
Query: 134 QNATQMLKEVWRVLKDKGVYIL 155
+ + K V LK+ GV+I
Sbjct: 119 DDLKKYFKAVSNHLKEGGVFIF 140
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 6e-10
Identities = 21/147 (14%), Positives = 57/147 (38%), Gaps = 13/147 (8%)
Query: 14 WYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDV 73
+ + Y G + ++ + + ++L +G G + +
Sbjct: 29 FIFGENYISSGG-------LEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHT 81
Query: 74 VNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSR 133
+DI S ++ ++ S ++ + D+ + F +FD + + + +L S
Sbjct: 82 HGIDICSNIVNMANERVSGNNKIIFEANDILTKE-FPENNFDLIYSRDAILAL-----SL 135
Query: 134 QNATQMLKEVWRVLKDKGVYILVTYGA 160
+N ++ ++ ++ LK G ++ Y A
Sbjct: 136 ENKNKLFQKCYKWLKPTGTLLITDYCA 162
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 9e-10
Identities = 17/148 (11%), Positives = 43/148 (29%), Gaps = 12/148 (8%)
Query: 14 WYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDV 73
+D+ E + + + +++ V +L G G + ++ G V
Sbjct: 14 HTYDSFVQGEDIQYK--EVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRT-V 70
Query: 74 VNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSR 133
++ S + +K + D + S D++V L +
Sbjct: 71 YGIEPSREMRMIAKEKLPKE--FSITEGDFLSFE--VPTSIDTIVSTYAFHHL-----TD 121
Query: 134 QNATQMLKEVWRVLKDKGVYILVTYGAP 161
+ + ++L G +
Sbjct: 122 DEKNVAIAKYSQLLNKGGKIVFADTIFA 149
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 2e-09
Identities = 28/147 (19%), Positives = 57/147 (38%), Gaps = 21/147 (14%)
Query: 15 YWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYE-DV 73
R ++G + + ++ ++ + +L +GCG ++ D E
Sbjct: 55 MQARRAFLDAGHYQPLR--DAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITT 112
Query: 74 VNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSR 133
+D+S V I+A K+Y PQ+ + ++ F S D+++ + +
Sbjct: 113 FGLDVSKVAIKAAAKRY---PQVTFCVASSHRLP-FSDTSMDAIIR---IYAP------- 158
Query: 134 QNATQMLKEVWRVLKDKGVYILVTYGA 160
+E+ RV+K G I T G
Sbjct: 159 ----CKAEELARVVKPGGWVITATPGP 181
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 2e-09
Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 29/145 (20%)
Query: 26 PFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEA 85
D + +I L I +G G +S + + G V V+ S
Sbjct: 17 VPDI----RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLF-VYAVEPS----IV 67
Query: 86 MMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQ------NATQM 139
M ++ PQ+++ + S D V+ S + +
Sbjct: 68 MRQQAVVHPQVEWFTGYAENLA-LPDKSVDGVI-------------SILAIHHFSHLEKS 113
Query: 140 LKEVWRVLKDKGVYILVTYGAPIYR 164
+E+ R+++D + +L R
Sbjct: 114 FQEMQRIIRDGTIVLLTFDIRLAQR 138
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 2e-09
Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 8/140 (5%)
Query: 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQ 95
LI+LY +L +GCG G + VDI+ V I + N R +
Sbjct: 57 LIRLYTK-RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFK 115
Query: 96 LKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155
+ + D FD + + S ++ ++ + + R L+ G +I+
Sbjct: 116 VFFRAQDSYGRHMDLGKEFDVIS---SQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM 172
Query: 156 VTYGAPIYRLGMLRDSCSWN 175
L + N
Sbjct: 173 TVPS-RDVILERYKQGRMSN 191
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 2e-09
Identities = 23/161 (14%), Positives = 47/161 (29%), Gaps = 28/161 (17%)
Query: 3 MGTTTQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFS 62
+ Y PW R P + + L+ L+ P R+L GCG+ +
Sbjct: 14 LARELGGYRHPW---ARVLSGPDPELTFDLW--LSRLLT---P--QTRVLEAGCGHGPDA 63
Query: 63 EGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGS-FDSVVDKG 121
D S +++ P + + + G+ F +V
Sbjct: 64 ARFGPQAAR-WAAYDFSPELLKLARANA---PHADVYEWNGKGELPAGLGAPFGLIV--- 116
Query: 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162
SR+ T ++ + + ++ V +
Sbjct: 117 ----------SRRGPTSVILRLPELAAPDAHFLYVGPRLNV 147
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 55.1 bits (132), Expect = 3e-09
Identities = 29/205 (14%), Positives = 65/205 (31%), Gaps = 20/205 (9%)
Query: 30 YQKY-----PSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVV 82
Y +I Y + ++ VGCG + M + +E ++ D+S+ +
Sbjct: 14 YSSSRPSYPSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATM 73
Query: 83 IEAMMKKYSNRPQLKYIKMDVRQMD-EFQTGSFDSVVDKGTLDSLLCGSNS-RQNATQML 140
I+ + Y + + + VDK +D + + + +
Sbjct: 74 IKT-AEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQ 132
Query: 141 KEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLH-VIEKLVVEEKSGHPIWELTN 199
+ + L+ G + Y PI+ + ++ ++ ++ P WE
Sbjct: 133 RSAYANLRKDGTIAIWGYADPIF---------PDYPEFDDLMIEVPYGKQGLGPYWEQPG 183
Query: 200 PVPLENDGRSVEELLGKNPDVHYIY 224
L N + D+ Y
Sbjct: 184 RSRLRNMLKDSHLDPELFHDIQVSY 208
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 3e-09
Identities = 32/208 (15%), Positives = 60/208 (28%), Gaps = 22/208 (10%)
Query: 15 YWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVV 74
++D A S A +L + G + +D G+ +V
Sbjct: 50 FYDEGAADTYRDLIQDADGTSEAREFATRTGPVSGPVLELAAGMGRLTFPFLDLGW-EVT 108
Query: 75 NVDISSVVIEAMMKKYSNRP-----QLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCG 129
+++S+ V+ A K+ + P + ++ D+ F +VV
Sbjct: 109 ALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL--DKRFGTVV---------IS 157
Query: 130 SNS-----RQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVIEKL 184
S S + + V L+ G ++L + L + L
Sbjct: 158 SGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVL 217
Query: 185 VVEEKSGHPIWELTNPVPLENDGRSVEE 212
V I E+T E V
Sbjct: 218 HVRHLPAEEIQEITIHPADETTDPFVVC 245
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 4e-09
Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 10/125 (8%)
Query: 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLK 97
+ V + + IL +G G S +++ E VD+S ++E ++ ++K
Sbjct: 36 VSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVK 95
Query: 98 YIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSN-SRQNATQMLKEVWRVLKDKGVYILV 156
YI+ D + D +D VV S L + ++ ++ K + +LK+ G++I
Sbjct: 96 YIEADYSKYDF--EEKYDMVV------SALSIHHLEDEDKKELYKRSYSILKESGIFINA 147
Query: 157 TYGAP 161
Sbjct: 148 DLVHG 152
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 6e-09
Identities = 22/154 (14%), Positives = 51/154 (33%), Gaps = 15/154 (9%)
Query: 15 YWDNRYAHESGPFDW----YQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY 70
YW+ + S P W + P +L ++ CGN ++ +
Sbjct: 22 YWN-KTLVNSTPVLWDANVERAVVVDLPRFELLFN-PELPLIDFACGNGTQTKFLSQFFP 79
Query: 71 EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD---EFQTGSFDSVVDKGTLDSLL 127
V+ +D+S +E K+ + + Y +D + + + D+ +
Sbjct: 80 R-VIGLDVSKSALEIAAKENT-AANISYRLLDGLVPEQAAQIHSEIGDANI----YMRTG 133
Query: 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161
+ + + + +L +G L+ G
Sbjct: 134 FHHIPVEKRELLGQSLRILLGKQGAMYLIELGTG 167
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 2e-08
Identities = 22/159 (13%), Positives = 47/159 (29%), Gaps = 18/159 (11%)
Query: 15 YWDNRYAHESGPFDWYQKYPS---------LAPLIKLYVPS-HHQRILIVGCGNSAFSEG 64
YW G Y S L ++ L G G ++
Sbjct: 37 YWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKR 96
Query: 65 MVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122
++ + +V VDI+ + Y ++ + S+D + +
Sbjct: 97 LLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT-PEPDSYDVIWIQWV 155
Query: 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161
+ L + Q+ + L+ L+ G+ ++ A
Sbjct: 156 IGHL-----TDQHLAEFLRRCKGSLRPNGIIVIKDNMAQ 189
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 2e-08
Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 11/129 (8%)
Query: 30 YQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIE-AMMK 88
L + RI+ +GCG F + G V+ +D+S ++ A +
Sbjct: 26 LDGAAEWPALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARA--R 83
Query: 89 KYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLK 148
+ Y + D+ ++ SFD L + ++ ++ + V + L
Sbjct: 84 AAGPDTGITYERADLDKL-HLPQDSFDLAYSSLALHYV-------EDVARLFRTVHQALS 135
Query: 149 DKGVYILVT 157
G ++ T
Sbjct: 136 PGGHFVFST 144
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* Length = 252 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 2e-08
Identities = 25/172 (14%), Positives = 53/172 (30%), Gaps = 26/172 (15%)
Query: 15 YWDNRYAHESGPFDWYQKYPSL-APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDV 73
W ++ F Q + L L R+ CG + + D G+ V
Sbjct: 35 DWKEKWVTRHISFHQEQGHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGH-TV 93
Query: 74 VNVDISSVVIEAMMKKY-------------------SNRPQLKYIKMDVRQMDEFQTGSF 114
V V+IS + I + S+ + + + G F
Sbjct: 94 VGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRANIGKF 153
Query: 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLG 166
D + D+G L ++ + + + + +L+ + Y++ +
Sbjct: 154 DRIWDRGALVAI-----NPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHA 200
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 2e-08
Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 26/150 (17%)
Query: 14 WYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDV 73
+ D A G + ++ + ++ + +R+L +GCG + D G E
Sbjct: 23 AWID---AVRHGAIESRRQ-VTDQAILLAILGRQPERVLDLGCGEGWLLRALADRGIE-A 77
Query: 74 VNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGTLDSLLCGS 130
V VD +++A + Q+ E +D + +
Sbjct: 78 VGVDGDRTLVDAARAAGAGEV----HLASYAQLAEAKVPVGKDYDLIC-----------A 122
Query: 131 N---SRQNATQMLKEVWRVLKDKGVYILVT 157
N Q+ ++L + +L G ++ T
Sbjct: 123 NFALLHQDIIELLSAMRTLLVPGGALVIQT 152
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 3e-08
Identities = 26/178 (14%), Positives = 51/178 (28%), Gaps = 27/178 (15%)
Query: 1 MT----MGTTTQAYGEPW--YWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIV 54
MT + + +Y +D + A L +L + +L +
Sbjct: 1 MTTSHGLIESQLSYYRARASEYDATFVPYMDSAA-------PAALERLRAGNIRGDVLEL 53
Query: 55 GCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTG 112
G ++ + V +D S M+ + +++ + D+
Sbjct: 54 ASGTGYWTRHLSGLADR-VTALDGS----AEMIAEAGRHGLDNVEFRQQDLFDWTP--DR 106
Query: 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRD 170
+D+V L + R A + V + GV V RL D
Sbjct: 107 QWDAVF---FAHWLAHVPDDRFEAF--WESVRSAVAPGGVVEFVDVTDHERRLEQQDD 159
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 5e-08
Identities = 26/156 (16%), Positives = 45/156 (28%), Gaps = 32/156 (20%)
Query: 16 WDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVN 75
+D AH A ++ L +G G + ++ GY +
Sbjct: 12 YDRLRAHPPEVAGQIAT----AMASAVHPKGEEPVFLELGVGTGRIALPLIARGYR-YIA 66
Query: 76 VDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----EFQTGSFDSVVDKGTLDSLLCGSN 131
+D AM++ + + K+ V Q D S V+
Sbjct: 67 LDAD----AAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVI------------- 109
Query: 132 SRQ------NATQMLKEVWRVLKDKGVYILVTYGAP 161
+ ++L E RVLK G + A
Sbjct: 110 VVHLWHLVPDWPKVLAEAIRVLKPGGALLEGWDQAE 145
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 1e-07
Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 27/159 (16%)
Query: 16 WDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVN 75
++ Y G + ++ +L L+ + +L VG G + + V
Sbjct: 10 YEAWYGTPLGAYVIAEEERALKGLLP-----PGESLLEVGAGTGYWLRRLPY---PQKVG 61
Query: 76 VDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQ 134
V+ S EAM+ R P+ +++ + F SFD V+ TL+ + +
Sbjct: 62 VEPS----EAMLAVGRRRAPEATWVRAWGEALP-FPGESFDVVLLFTTLEFV-------E 109
Query: 135 NATQMLKEVWRVLKDKGVYILVT------YGAPIYRLGM 167
+ ++L E RVL+ G ++ + A RLG
Sbjct: 110 DVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGE 148
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 3e-07
Identities = 29/193 (15%), Positives = 63/193 (32%), Gaps = 39/193 (20%)
Query: 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKY 98
+ I+ GCGN + + +++ + +DI+ +K+ +
Sbjct: 9 YLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA-TKLYCIDIN----VIALKEVKEK--FDS 61
Query: 99 IKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158
+ E S D ++ + + + ++ EV R+LKD G I++ +
Sbjct: 62 VITLSDPK-EIPDNSVDFILFANSFHDM-------DDKQHVISEVKRILKDDGRVIIIDW 113
Query: 159 GAPIYRLGMLRDSCSWNIKLHVIEKLVVEEKSGHPIWELTNPVPLENDGRSVEELLGKNP 218
+G + + + EK + S + + NP P
Sbjct: 114 RKENTGIG-------PPLSIRMDEKDYMGWFSNFVVEKRFNPTP---------------- 150
Query: 219 DVHYIYVCTKDES 231
H+ V + S
Sbjct: 151 -YHFGLVLKRKTS 162
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 4e-07
Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 26/146 (17%)
Query: 16 WDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVN 75
++ + + + +K +P R + +G G F+ + + +
Sbjct: 24 YERWFLVHRFAYLSELQ------AVKCLLP--EGRGVEIGVGTGRFAVPL-----KIKIG 70
Query: 76 VDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQN 135
V+ S E M + R + +K + + SFD + T+ + +
Sbjct: 71 VEPS----ERMAEIARKR-GVFVLKGTAENLP-LKDESFDFALMVTTICFV-------DD 117
Query: 136 ATQMLKEVWRVLKDKGVYILVTYGAP 161
+ LKE +R+LK G I+
Sbjct: 118 PERALKEAYRILKKGGYLIVGIVDRE 143
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 5e-07
Identities = 35/192 (18%), Positives = 63/192 (32%), Gaps = 41/192 (21%)
Query: 12 EPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYE 71
E ++ + D Y P+I Y+ IL +GCG+ S + GY
Sbjct: 3 ESYWEKVSGKNIPSSLDLY-------PIIHNYLQED-DEILDIGCGSGKISLELASKGYS 54
Query: 72 DVVNVDISSVVIEAMMKK-----------YSNRPQLKYIKMDVRQMDEFQTGSFDSVVDK 120
V +DI+ ++ + ++ + + F SFD V
Sbjct: 55 -VTGIDIN----SEAIRLAETAARSPGLNQKTGGKAEFKVENASSLS-FHDSSFDFAV-- 106
Query: 121 GTLDSLLCGSNSR-----QNATQMLKEVWRVLKDKGVYILVTYGAPIYR-LGMLRDSCSW 174
+ + ++++KEV+RVLK LV +G + L R +
Sbjct: 107 -------MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDF 159
Query: 175 NIKLHVIEKLVV 186
I +
Sbjct: 160 PI-TKEEGSFLA 170
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 5e-07
Identities = 32/147 (21%), Positives = 52/147 (35%), Gaps = 30/147 (20%)
Query: 28 DW----YQKYPSL-----APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDI 78
W YQ S L++L P + IL +GCG +E + G E V+ D
Sbjct: 29 FWDATLYQDKHSFVWQYGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGAE-VLGTDN 87
Query: 79 SSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSR----Q 134
++ +IE + Y P L + D R D+V SN+ +
Sbjct: 88 AATMIEKARQNY---PHLHFDVADARNFR-VD-KPLDAVF-----------SNAMLHWVK 131
Query: 135 NATQMLKEVWRVLKDKGVYILVTYGAP 161
+ + + LK G ++ G
Sbjct: 132 EPEAAIASIHQALKSGGRFVAEFGGKG 158
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 1e-06
Identities = 17/167 (10%), Positives = 47/167 (28%), Gaps = 24/167 (14%)
Query: 8 QAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVD 67
Y E + ++ E + + ++ +IL +G G ++
Sbjct: 13 GKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILS 72
Query: 68 -------DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----------EFQ 110
+ V+ S+ I + + L+ +K + + +
Sbjct: 73 KVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKE 132
Query: 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157
+D + L + ++ LK +L +++
Sbjct: 133 LQKWDFIHMIQMLYYV-------KDIPATLKFFHSLLGTNAKMLIIV 172
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 2e-06
Identities = 22/142 (15%), Positives = 52/142 (36%), Gaps = 16/142 (11%)
Query: 18 NRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVD 77
N + Y ++ P + ++ + +L +GC + A + ++G V ++
Sbjct: 3 NSPKNSLYEEKSGHYYNAVNPNLLKHIKKEWKEVLDIGCSSGALGAAIKENGTR-VSGIE 61
Query: 78 ISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL--LCGSNSRQN 135
E +K + + ++ M ++ FD V+ D L L +
Sbjct: 62 AFPEAAEQAKEKLDH---VVLGDIETMDMP-YEEEQFDCVI---FGDVLEHL------FD 108
Query: 136 ATQMLKEVWRVLKDKGVYILVT 157
++++V +K GV +
Sbjct: 109 PWAVIEKVKPYIKQNGVILASI 130
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 3e-06
Identities = 29/197 (14%), Positives = 61/197 (30%), Gaps = 25/197 (12%)
Query: 14 WYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDV 73
E Y ++ ++L +GCG S + GY DV
Sbjct: 87 CTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLLGY-DV 145
Query: 74 VNVDISSVVIEAMMKKYSNRP-QLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNS 132
+ D + I + + + D+ + ++D +V L +
Sbjct: 146 TSWDHNENSIAFLNETKEKENLNISTALYDINAANI--QENYDFIVSTVVFMFL-----N 198
Query: 133 RQNATQMLKEVWRVLKDKGVYILVT------YGAPI-----YRLGMLRDSCS-WNIKLHV 180
R+ ++K + G ++V P+ + L++ W L
Sbjct: 199 RERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKDWEF-LEY 257
Query: 181 IE---KLVVEEKSGHPI 194
E +L +++G+ I
Sbjct: 258 NENMGELHKTDENGNRI 274
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 3e-06
Identities = 26/151 (17%), Positives = 56/151 (37%), Gaps = 21/151 (13%)
Query: 1 MTMGTTTQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSA 60
M++ Y E E+ + ++L GCG A
Sbjct: 1 MSLTEYVHGYSEREALRLSEQAET----LEKLLHHDTVYPP------GAKVLEAGCGIGA 50
Query: 61 FSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSV 117
+ + + + ++ ++DIS +E + +K+++ ++ + F+ SFD +
Sbjct: 51 QTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLP-FEDSSFDHI 109
Query: 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLK 148
L+ L Q+ + LK + +VLK
Sbjct: 110 FVCFVLEHL-------QSPEEALKSLKKVLK 133
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Length = 203 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 4e-06
Identities = 20/154 (12%), Positives = 44/154 (28%), Gaps = 20/154 (12%)
Query: 27 FDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAM 86
+ L R+L+ CG S + GY VV ++S +E
Sbjct: 2 SHQSEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERY 60
Query: 87 MKKYSNRPQL--------------KYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNS 132
+ +P + + D + G + D+ + +L
Sbjct: 61 FTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIAL-----P 115
Query: 133 RQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLG 166
+ ++ + ++ +L+T L
Sbjct: 116 ADMRERYVQHLEALMPQACSGLLITLEYDQALLE 149
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313 | Back alignment and structure |
|---|
Score = 45.7 bits (107), Expect = 4e-06
Identities = 33/193 (17%), Positives = 66/193 (34%), Gaps = 21/193 (10%)
Query: 39 LIKLYVPSHHQ------RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN 92
LI ++ Q +L +GCG +V DI+ V ++ ++Y +
Sbjct: 20 LIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYED 79
Query: 93 RPQLKYIKMDVRQMDEFQTGSFDSVVDK-----GTLDSLLC------GSNSRQNATQMLK 141
+ + S + ++DK D C S + A ML+
Sbjct: 80 MKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLR 139
Query: 142 EVWRVLKDKGVYILVTY-GAPIYRLGMLRDSCSWNIKLHVIEKLVVEEKSGHPIWELTNP 200
L G +I T + R ++ S+ +++ ++ ++K +P++
Sbjct: 140 NACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKF---QKKGDYPLFGCKYD 196
Query: 201 VPLENDGRSVEEL 213
LE E L
Sbjct: 197 FNLEGVVDVPEFL 209
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 7e-06
Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 11/113 (9%)
Query: 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIE---AMMKKYSNRPQLKYIKMDVRQ 105
R+L VGCG + + V + IS + A ++ + D
Sbjct: 63 DRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMD 122
Query: 106 MDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158
+ F+ SFD+V +L + + + L+E+ RVL+ G + +
Sbjct: 123 LP-FEDASFDAVW------ALESLHHM-PDRGRALREMARVLRPGGTVAIADF 167
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 8e-06
Identities = 20/137 (14%), Positives = 52/137 (37%), Gaps = 19/137 (13%)
Query: 31 QKYPSLAPL----IKLYVPSHH-QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIE 84
+K SL + + + +R++ +GCG + ++ D +E + VD+S +E
Sbjct: 8 EKPISLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLE 67
Query: 85 AMMKKYS-------NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNAT 137
++ +L+ I+ + D+ + +D+ ++ L
Sbjct: 68 IAQERLDRLRLPRNQWERLQLIQGALTYQDK-RFHGYDAATVIEVIEHL-----DLSRLG 121
Query: 138 QMLKEVWRVLKDKGVYI 154
+ ++ + K V +
Sbjct: 122 AFERVLFEFAQPKIVIV 138
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 1e-05
Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 11/113 (9%)
Query: 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIE---AMMKKYSNRPQLKYIKMDVRQ 105
+ L +G G + +V + ++I+ V + + + +
Sbjct: 84 AKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE 143
Query: 106 MDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158
+ + S+D + S +S + ++ +E RVLK +GV +
Sbjct: 144 IP-CEDNSYDFIW------SQDAFLHS-PDKLKVFQECARVLKPRGVMAITDP 188
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 2e-05
Identities = 14/118 (11%), Positives = 37/118 (31%), Gaps = 26/118 (22%)
Query: 49 QRILIVGCGNSAFSE---GMVDDGYEDVVNVDISSVVIEAMMKKYSNRP-QLKYIKMDVR 104
I+ GCG ++ +G + +D ++ + + P ++++ D
Sbjct: 24 VHIVDYGCGYGYLGLVLMPLLPEGSK-YTGIDSGETLLAEARELFRLLPYDSEFLEGDAT 82
Query: 105 QMDEFQTGSFDSVVDKGTLDSLLCGSNSRQ------NATQMLKEVWRVLKDKGVYILV 156
+++ +D + ML+++ +K G I
Sbjct: 83 EIE-LN-DKYDIAI-------------CHAFLLHMTTPETMLQKMIHSVKKGGKIICF 125
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 2e-05
Identities = 22/154 (14%), Positives = 51/154 (33%), Gaps = 24/154 (15%)
Query: 17 DNRYAHE---SGPFDWYQKYPSLAP---------LIKLYVPSHHQRILIVGCGNSAFSEG 64
+N+ H+ + D++ P L + + I +GCG +
Sbjct: 4 ENKTIHDFELNLICDFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMV 63
Query: 65 MVDDGYEDVVNVDISSVVIE---AMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121
+ V +D S I+ ++ + ++ I + + F+ D + +G
Sbjct: 64 LAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP-FRNEELDLIWSEG 122
Query: 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155
+ ++ + L E + LK G +
Sbjct: 123 AIYNI--------GFERGLNEWRKYLKKGGYLAV 148
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 3e-05
Identities = 22/149 (14%), Positives = 43/149 (28%), Gaps = 30/149 (20%)
Query: 25 GPFDW----YQKYPSL-----APLIKLYVPSHHQRILIVGCGNSAFSEGMVD-DGYEDVV 74
G W Y K+ L+ +GCG +E + D G +
Sbjct: 2 GHMAWSAQQYLKFEDERTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVIT 61
Query: 75 NVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSR- 133
+D ++E + P + K D+ D + +N+
Sbjct: 62 GIDSDDDMLEKAADRL---PNTNFGKADLATWK--PAQKADLLY-----------ANAVF 105
Query: 134 ---QNATQMLKEVWRVLKDKGVYILVTYG 159
+ +L ++ L+ GV +
Sbjct: 106 QWVPDHLAVLSQLMDQLESGGVLAVQMPD 134
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 3e-05
Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 12/111 (10%)
Query: 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIE---AMMKKYSNRPQLKYIKMDVR 104
+I +GCG + + D + +D+ IE K + ++K I +
Sbjct: 47 DAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMD 106
Query: 105 QMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155
+ FQ D + +G + ++ + + E + LK G +
Sbjct: 107 NLP-FQNEELDLIWSEGAIYNI--------GFERGMNEWSKYLKKGGFIAV 148
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 3e-05
Identities = 24/146 (16%), Positives = 57/146 (39%), Gaps = 17/146 (11%)
Query: 15 YWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQ--RILIVGCGNSAFSEGMVDDGYED 72
+ + Y F ++ + ++ Y+P R+L +GCG F E ++G +
Sbjct: 9 HTSDYYFLFEEKFRGSREL--VKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGI-E 65
Query: 73 VVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-MDEFQTGSFDSVVDKGTLDSLLCGSN 131
+ VDI+ +I+ K++ +K D + + D V+ ++ L
Sbjct: 66 SIGVDINEDMIKFCEGKFNV------VKSDAIEYLKSLPDKYLDGVMISHFVEHL----- 114
Query: 132 SRQNATQMLKEVWRVLKDKGVYILVT 157
+ ++L + +K ++ +
Sbjct: 115 DPERLFELLSLCYSKMKYSSYIVIES 140
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 4e-05
Identities = 17/119 (14%), Positives = 38/119 (31%), Gaps = 13/119 (10%)
Query: 49 QRILIVGCG---NSAFSEGMVDDGYEDVVNVDISSVVIE---AMMKKYSNRPQLKYIKMD 102
+ V CG + G + +V +D ++ + ++ Q+ + D
Sbjct: 120 CVVASVPCGWMSELLALDYSACPGVQ-LVGIDYDPEALDGATRLAAGHALAGQITLHRQD 178
Query: 103 VRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161
++D +D + G T++ + W+ LK G + P
Sbjct: 179 AWKLDT--REGYDLLTSNGLNIYEP----DDARVTELYRRFWQALKPGGALVTSFLTPP 231
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 1e-04
Identities = 19/137 (13%), Positives = 51/137 (37%), Gaps = 19/137 (13%)
Query: 31 QKYPSLAPL----IKLYVPSHH-QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIE 84
+K +L + + S + ++++ +GCG ++ D +E + VD+S V+E
Sbjct: 8 EKKLNLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLE 67
Query: 85 AMMKKYS-------NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNAT 137
+ R ++ + + D+ + +D+ ++ L
Sbjct: 68 RAKDRLKIDRLPEMQRKRISLFQSSLVYRDK-RFSGYDAATVIEVIEHL-----DENRLQ 121
Query: 138 QMLKEVWRVLKDKGVYI 154
K ++ + + V +
Sbjct: 122 AFEKVLFEFTRPQTVIV 138
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 2e-04
Identities = 16/102 (15%), Positives = 39/102 (38%), Gaps = 11/102 (10%)
Query: 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQM 106
+ +G G A S + + +D S + E +K ++ +++ ++ DV +
Sbjct: 46 TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNI 105
Query: 107 DEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLK 148
+ D +V ++ +E++R+LK
Sbjct: 106 P-IEDNYADLIV-------SRGSVFFWEDVATAFREIYRILK 139
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 2e-04
Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 23/134 (17%)
Query: 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-- 93
LA L+++ ++ +L V G + + VV D++ +++
Sbjct: 26 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGH 84
Query: 94 PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQ------NATQMLKEVWRVL 147
Q++Y++ D QM F F V R N + E +RVL
Sbjct: 85 QQVEYVQGDAEQMP-FTDERFHIVT-------------CRIAAHHFPNPASFVSEAYRVL 130
Query: 148 KDKGVYILVTYGAP 161
K G +LV AP
Sbjct: 131 KKGGQLLLVDNSAP 144
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 2e-04
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 23/135 (17%)
Query: 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR- 93
SL +IK R+L +G G + E + VD + ++E +
Sbjct: 9 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQE-CIGVDATKEMVEVASSFAQEKG 67
Query: 94 -PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQ------NATQMLKEVWRV 146
+++ + + F SFD + R + + ++EV RV
Sbjct: 68 VENVRFQQGTAESLP-FPDDSFDIIT-------------CRYAAHHFSDVRKAVREVARV 113
Query: 147 LKDKGVYILVTYGAP 161
LK G ++LV + AP
Sbjct: 114 LKQDGRFLLVDHYAP 128
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 4e-04
Identities = 16/112 (14%), Positives = 35/112 (31%), Gaps = 12/112 (10%)
Query: 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIE---AMMKKYSNRPQLKYIKMDVRQ 105
++ GCG V V +S+ + ++ ++ ++
Sbjct: 119 DTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLD 178
Query: 106 MDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157
F G+ + +S + + + E R LK G Y+ +T
Sbjct: 179 TP-FDKGAVTAS---WNNESTM-----YVDLHDLFSEHSRFLKVGGRYVTIT 221
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 237 | |||
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.92 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.89 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.84 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.84 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.82 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.82 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.82 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.81 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.8 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.8 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.79 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.79 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.79 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.78 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.78 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.78 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.78 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.77 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.77 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.76 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.76 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.76 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.76 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.76 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.76 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.76 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.76 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.75 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.75 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.75 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.75 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.75 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.74 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.74 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.74 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.74 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.74 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.74 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.74 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.74 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.73 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.73 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.73 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.73 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.73 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.73 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.72 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.72 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.72 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.72 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.72 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.72 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.72 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.72 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.72 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.71 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.71 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.71 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.71 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.71 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.7 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.7 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.7 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.7 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.7 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.7 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.7 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.7 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.69 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.69 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.69 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.69 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.68 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.68 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.68 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.67 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.67 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.67 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.66 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.66 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.66 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.65 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.65 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.65 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.65 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.65 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.65 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.65 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.64 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.64 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.63 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.63 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.63 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.63 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.62 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.62 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.62 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.62 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.62 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.62 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.62 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.62 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.62 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.61 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.61 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.61 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.6 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.6 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.6 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.6 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.6 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.6 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.59 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.59 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.59 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.59 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.59 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.59 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.59 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.59 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.59 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.58 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.58 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.57 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.57 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.56 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.56 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.56 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.56 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.55 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.55 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.55 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.55 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.54 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.54 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.54 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.54 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.54 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.54 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.54 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.54 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.53 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.53 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.53 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.53 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.53 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.53 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.53 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.53 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.52 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.52 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.52 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.52 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.52 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.52 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.52 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.52 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.51 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.51 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.51 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.51 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.51 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.51 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.51 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.51 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.5 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.5 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.5 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.5 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.5 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.5 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.5 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.49 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.49 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.49 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.49 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.49 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.49 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.49 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.49 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.49 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.48 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.48 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.48 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.48 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.48 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.48 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.48 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.47 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.47 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.47 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.47 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.46 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.46 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.46 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.46 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.46 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.46 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.45 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.45 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.45 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.45 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.45 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.44 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.44 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.44 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.44 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.44 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.44 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.43 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.43 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.42 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.42 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.42 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.42 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.41 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.41 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.41 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.41 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.41 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.4 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.39 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.39 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.39 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.39 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.39 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.39 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.38 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.37 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.37 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.37 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.36 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.36 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.35 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.35 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.35 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.35 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.34 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.34 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.33 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.33 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.31 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.31 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.3 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.3 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.29 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.28 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.27 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.26 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.26 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.23 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.22 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.21 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.21 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.2 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.19 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.17 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.16 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.15 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.13 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.11 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.1 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.08 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.08 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 99.07 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 99.06 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.02 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 99.01 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.98 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.97 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.96 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.94 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.93 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.92 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.91 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.9 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.8 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.79 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.78 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.77 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.74 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.63 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.63 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.62 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.55 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.52 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.49 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.47 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.47 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.46 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.46 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.43 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.37 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 98.31 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.27 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 98.1 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.06 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 98.05 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.99 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.78 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.68 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 97.6 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.6 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 97.59 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.55 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.51 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.4 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 97.39 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.24 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 97.03 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 96.98 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 96.91 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 96.9 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 96.84 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 96.66 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 96.55 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.29 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 96.28 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 96.21 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.16 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.15 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.0 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 96.0 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.92 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.75 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.74 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 95.61 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 95.59 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.55 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.54 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 95.5 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 95.45 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 95.38 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 95.34 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 95.32 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 95.32 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 95.16 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 95.15 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 95.04 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 95.01 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 94.99 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 94.97 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 94.95 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 94.93 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 94.91 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 94.86 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 94.84 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 94.76 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 94.76 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 94.71 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 94.65 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 94.65 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 94.57 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 94.48 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 94.45 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.45 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 94.4 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.33 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 94.31 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 94.28 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 94.26 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 94.24 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 94.22 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 94.21 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 94.17 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 94.13 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 94.08 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 93.95 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 93.87 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 93.8 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 93.6 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 93.4 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 93.33 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 93.23 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 93.18 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 93.13 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 93.12 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 93.07 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 93.0 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 92.94 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 92.94 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 92.88 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 92.88 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 92.84 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 92.69 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 92.67 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 92.62 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 92.6 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 92.56 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 92.56 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 92.44 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 92.31 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 92.31 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 92.21 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 92.19 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 92.16 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 92.16 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 92.14 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 92.12 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 92.1 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 91.99 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 91.71 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 91.68 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 91.65 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 91.54 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 91.52 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 91.33 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 91.21 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 91.21 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 91.18 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 91.17 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 91.13 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 91.12 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 91.09 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 91.09 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 91.07 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 90.91 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 90.88 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 90.85 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 90.83 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 90.78 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 90.78 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 90.77 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 90.74 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 90.7 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 90.51 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 90.22 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 90.18 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 90.18 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 90.06 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 90.06 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 90.01 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 89.91 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 89.88 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 89.86 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 89.85 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 89.82 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 89.7 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 89.69 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 89.68 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 89.67 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 89.67 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 89.61 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 89.54 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 89.53 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 89.5 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 89.41 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 89.38 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 89.36 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 89.21 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 89.2 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 89.16 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 88.73 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 88.72 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 88.66 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 88.53 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 88.48 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 88.46 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 88.46 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 88.27 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 88.25 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 88.23 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 88.17 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 88.17 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 88.05 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 87.91 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 87.89 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 87.81 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 87.57 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 87.54 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 87.44 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 87.43 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 87.38 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 87.29 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 87.23 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 87.21 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 87.13 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 87.11 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 87.06 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 87.06 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 87.01 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 86.89 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 86.84 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 86.72 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 86.7 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 86.53 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 86.52 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 86.46 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 86.42 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 86.31 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 86.27 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 86.26 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 86.24 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 86.21 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 86.19 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 86.13 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 86.04 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 85.91 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 85.86 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 85.74 |
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-24 Score=169.36 Aligned_cols=172 Identities=40% Similarity=0.724 Sum_probs=139.9
Q ss_pred CCCCChhhhHHHhccCCC--CceeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHH
Q 026558 8 QAYGEPWYWDNRYAHESG--PFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEA 85 (237)
Q Consensus 8 ~~~~~~~~w~~~y~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~ 85 (237)
+.|.+++||+..|..... .+.|+..+..+..++...+.++. +|||+|||+|.++..+++.+..+++++|+|+.+++.
T Consensus 2 ~~~~~~~~W~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~ 80 (215)
T 2pxx_A 2 SGYREVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPED-RILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAA 80 (215)
T ss_dssp GGGGCHHHHHHHTTTTTTSCCCCTTCCHHHHHHHHGGGCCTTC-CEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHH
T ss_pred CcccchhHHHHHhccCCCCCCcccccCHHHHHHHHHHhcCCCC-eEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHH
Confidence 468899999999998753 47787777778888888776665 999999999999999999875599999999999999
Q ss_pred HHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceeccCC--------CChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 86 MMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGS--------NSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 86 a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~--------~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
++++....+++.+.++|+.+++ +++++||+|++..+++++.+.. .+..+...+++++.++|+|||++++.+
T Consensus 81 a~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 159 (215)
T 2pxx_A 81 MQACYAHVPQLRWETMDVRKLD-FPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMT 159 (215)
T ss_dssp HHHHTTTCTTCEEEECCTTSCC-SCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHhcccCCCcEEEEcchhcCC-CCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEe
Confidence 9999876568999999999886 7788999999999887763221 114577899999999999999999999
Q ss_pred cCCchhhhhcc-cCCCCceEEEEEe
Q 026558 158 YGAPIYRLGML-RDSCSWNIKLHVI 181 (237)
Q Consensus 158 ~~~~~~~~~~~-~~~~~w~~~~~~~ 181 (237)
+..+.....++ .....|.......
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (215)
T 2pxx_A 160 SAAPHFRTRHYAQAYYGWSLRHATY 184 (215)
T ss_dssp SCCHHHHHHHHCCGGGCEEEEEEEE
T ss_pred CCCcHHHHHHHhccccCcEEEEEEe
Confidence 88877666555 3334576555443
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-22 Score=163.06 Aligned_cols=144 Identities=16% Similarity=0.270 Sum_probs=114.6
Q ss_pred CCCCCChhhhHHHhccCCCCceeecCCcChHHHHHhhCC-CCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHH
Q 026558 7 TQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVP-SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEA 85 (237)
Q Consensus 7 ~~~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~ 85 (237)
.....+++||+..|......+.+....+.+.+++..... ..+.+|||+|||+|..+..+++.|. +|+|+|+|+.+++.
T Consensus 27 ~~~~~~~~~Wd~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~ 105 (252)
T 2gb4_A 27 KNQVLTLEDWKEKWVTRHISFHQEQGHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIRE 105 (252)
T ss_dssp TTCCCCHHHHHHHHHHTCCTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHH
T ss_pred ccccCCHHHHHHHHhcCCCCcccCCCCHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHH
Confidence 445566889999998876555443334445666655432 2234999999999999999999987 99999999999999
Q ss_pred HHHHcC-------------------CCCCcEEEEccccccccccC-CCccEEEeccccceeccCCCChHHHHHHHHHHHH
Q 026558 86 MMKKYS-------------------NRPQLKYIKMDVRQMDEFQT-GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWR 145 (237)
Q Consensus 86 a~~~~~-------------------~~~~~~~~~~d~~~~~~~~~-~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 145 (237)
|+++.. ...+++++++|+.+++ +.. ++||+|++..+++++ +......+++++.+
T Consensus 106 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~-~~~~~~FD~V~~~~~l~~l-----~~~~~~~~l~~~~~ 179 (252)
T 2gb4_A 106 FFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLP-RANIGKFDRIWDRGALVAI-----NPGDHDRYADIILS 179 (252)
T ss_dssp HHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGG-GGCCCCEEEEEESSSTTTS-----CGGGHHHHHHHHHH
T ss_pred HHHhcccccccccccccccccccccCCCceEEEECccccCC-cccCCCEEEEEEhhhhhhC-----CHHHHHHHHHHHHH
Confidence 987763 1357999999999987 443 799999999999988 55678889999999
Q ss_pred hcCCCcEEEEEE
Q 026558 146 VLKDKGVYILVT 157 (237)
Q Consensus 146 ~L~pgG~l~~~~ 157 (237)
+|+|||++++.+
T Consensus 180 ~LkpGG~l~l~~ 191 (252)
T 2gb4_A 180 LLRKEFQYLVAV 191 (252)
T ss_dssp TEEEEEEEEEEE
T ss_pred HcCCCeEEEEEE
Confidence 999999997655
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=147.59 Aligned_cols=116 Identities=16% Similarity=0.249 Sum_probs=96.5
Q ss_pred ChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--------------CCCcEEEE
Q 026558 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--------------RPQLKYIK 100 (237)
Q Consensus 35 ~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--------------~~~~~~~~ 100 (237)
.+.+++.....+...+|||+|||+|..+..+++.+. +|+|+|+|+.|++.|+++... ..++++++
T Consensus 10 ~l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 88 (203)
T 1pjz_A 10 DLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC 88 (203)
T ss_dssp HHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred HHHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEE
Confidence 356666655433334999999999999999999986 999999999999999998642 35899999
Q ss_pred ccccccccccC-CCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 101 MDVRQMDEFQT-GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 101 ~d~~~~~~~~~-~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+|+.+++ +.+ ++||+|++..+++++ +......+++++.++|+|||++++.+
T Consensus 89 ~d~~~l~-~~~~~~fD~v~~~~~l~~l-----~~~~~~~~l~~~~r~LkpgG~~~l~~ 140 (203)
T 1pjz_A 89 GDFFALT-ARDIGHCAAFYDRAAMIAL-----PADMRERYVQHLEALMPQACSGLLIT 140 (203)
T ss_dssp ECCSSST-HHHHHSEEEEEEESCGGGS-----CHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred CccccCC-cccCCCEEEEEECcchhhC-----CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999987 544 789999999999988 56677889999999999999855554
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-20 Score=149.85 Aligned_cols=101 Identities=19% Similarity=0.376 Sum_probs=93.0
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~ 128 (237)
.+|||+|||+|.++..+++.+..+++|+|+|+.+++.|+++.. ..++.+.++|+.+++ +++++||+|++..+++++
T Consensus 46 ~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~-- 121 (253)
T 3g5l_A 46 KTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT-SPVVCYEQKAIEDIA-IEPDAYNVVLSSLALHYI-- 121 (253)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC-CTTEEEEECCGGGCC-CCTTCEEEEEEESCGGGC--
T ss_pred CEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc-cCCeEEEEcchhhCC-CCCCCeEEEEEchhhhhh--
Confidence 4999999999999999999976699999999999999999986 468999999999887 778999999999999998
Q ss_pred CCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 129 GSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.+...+++++.++|+|||++++.+.
T Consensus 122 -----~~~~~~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 122 -----ASFDDICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp -----SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -----hhHHHHHHHHHHHcCCCcEEEEEeC
Confidence 7789999999999999999998764
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-20 Score=150.53 Aligned_cols=111 Identities=22% Similarity=0.337 Sum_probs=96.4
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCcc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
+.+.+....+... +|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++ +++.++++|+.+++ +++++||
T Consensus 29 l~~~l~~~~~~~~-~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~~----~~v~~~~~~~e~~~-~~~~sfD 101 (257)
T 4hg2_A 29 LFRWLGEVAPARG-DALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALRH----PRVTYAVAPAEDTG-LPPASVD 101 (257)
T ss_dssp HHHHHHHHSSCSS-EEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCCC----TTEEEEECCTTCCC-CCSSCEE
T ss_pred HHHHHHHhcCCCC-CEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhhc----CCceeehhhhhhhc-ccCCccc
Confidence 6667777766655 999999999999999999875 999999999999887643 68999999999998 8899999
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
+|++..++|++ +...+++++.|+|||||+|++..+..+
T Consensus 102 ~v~~~~~~h~~--------~~~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 102 VAIAAQAMHWF--------DLDRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp EEEECSCCTTC--------CHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred EEEEeeehhHh--------hHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 99999999887 246789999999999999999876543
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=147.09 Aligned_cols=113 Identities=19% Similarity=0.261 Sum_probs=94.7
Q ss_pred HHHhhCCCCCCcEEEEccCCchhHHHHHHcC---CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCC
Q 026558 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDG---YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTG 112 (237)
Q Consensus 39 ~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~---~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~ 112 (237)
++...+.++. +|||||||+|..+..+++.. ..+++|+|+|+.|++.|++++.. ..+++++++|+.+++ + +
T Consensus 63 l~~~~~~~~~-~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~-~--~ 138 (261)
T 4gek_A 63 LAERFVQPGT-QVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-I--E 138 (261)
T ss_dssp HHHHHCCTTC-EEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCC-C--C
T ss_pred HHHHhCCCCC-EEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccc-c--c
Confidence 3444455665 99999999999999998863 24899999999999999998743 247899999999887 4 5
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.||+|++..+++++ +..+...+|++++++|+|||++++.+...
T Consensus 139 ~~d~v~~~~~l~~~-----~~~~~~~~l~~i~~~LkpGG~lii~e~~~ 181 (261)
T 4gek_A 139 NASMVVLNFTLQFL-----EPSERQALLDKIYQGLNPGGALVLSEKFS 181 (261)
T ss_dssp SEEEEEEESCGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred ccccceeeeeeeec-----CchhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence 69999999999998 66777889999999999999999976533
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.9e-20 Score=146.18 Aligned_cols=139 Identities=22% Similarity=0.318 Sum_probs=112.9
Q ss_pred hhhhHHHhccCCCCceeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC
Q 026558 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN 92 (237)
Q Consensus 13 ~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~ 92 (237)
.++|+..|......+........+..++.....++. +|||+|||+|.++..+++.+. +++|+|+|+.+++.|+++...
T Consensus 33 ~~~w~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~ 110 (235)
T 3lcc_A 33 EGGWEKCWEEEITPWDQGRATPLIVHLVDTSSLPLG-RALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGS 110 (235)
T ss_dssp HHHHHHHHHTTCCTTCCSSCCHHHHHHHHTTCSCCE-EEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCCcccCCCCHHHHHHHHhcCCCCC-CEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhc
Confidence 468999998876555433334445666665544444 999999999999999988765 899999999999999999864
Q ss_pred C---CCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 93 R---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 93 ~---~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
. .+++++++|+.+++ +.++||+|++..+++++ ++++...+++++.++|+|||.+++..+..
T Consensus 111 ~~~~~~v~~~~~d~~~~~--~~~~fD~v~~~~~l~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 174 (235)
T 3lcc_A 111 SPKAEYFSFVKEDVFTWR--PTELFDLIFDYVFFCAI-----EPEMRPAWAKSMYELLKPDGELITLMYPI 174 (235)
T ss_dssp SGGGGGEEEECCCTTTCC--CSSCEEEEEEESSTTTS-----CGGGHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred cCCCcceEEEECchhcCC--CCCCeeEEEEChhhhcC-----CHHHHHHHHHHHHHHCCCCcEEEEEEecc
Confidence 2 36899999999876 45699999999999998 55689999999999999999999887643
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-19 Score=145.20 Aligned_cols=140 Identities=26% Similarity=0.448 Sum_probs=104.2
Q ss_pred CCChhhhHHHhccCCCC--ceee-cCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHH
Q 026558 10 YGEPWYWDNRYAHESGP--FDWY-QKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAM 86 (237)
Q Consensus 10 ~~~~~~w~~~y~~~~~~--~~~~-~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a 86 (237)
...+++|+......... -.|. .....+...+...++++. +|||+|||+|.++..+++.+. +++|+|+|+.+++.+
T Consensus 14 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a 91 (242)
T 3l8d_A 14 ESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEA-EVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKG 91 (242)
T ss_dssp ------------------CHHHHTSTTTTHHHHHHHHSCTTC-EEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred HHHHHHHHhHHHHhhhhhhhccCcccHHHHHHHHHHHcCCCC-eEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHH
Confidence 34456777654432221 1121 234457777777777665 999999999999999999975 999999999999999
Q ss_pred HHHcCCCCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 87 MKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 87 ~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+++.. ..++.++++|+.+++ +++++||+|++..+++|+ .+...+++++.++|+|||++++.+...
T Consensus 92 ~~~~~-~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~-------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 156 (242)
T 3l8d_A 92 KERGE-GPDLSFIKGDLSSLP-FENEQFEAIMAINSLEWT-------EEPLRALNEIKRVLKSDGYACIAILGP 156 (242)
T ss_dssp HTTTC-BTTEEEEECBTTBCS-SCTTCEEEEEEESCTTSS-------SCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred Hhhcc-cCCceEEEcchhcCC-CCCCCccEEEEcChHhhc-------cCHHHHHHHHHHHhCCCeEEEEEEcCC
Confidence 99863 368999999999887 778999999999999998 777899999999999999999988544
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.4e-19 Score=140.55 Aligned_cols=144 Identities=15% Similarity=0.236 Sum_probs=112.4
Q ss_pred CCCChhhhHHHhccCCCCceeecC---CcChHHHHHhhCCCCC-CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHH
Q 026558 9 AYGEPWYWDNRYAHESGPFDWYQK---YPSLAPLIKLYVPSHH-QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIE 84 (237)
Q Consensus 9 ~~~~~~~w~~~y~~~~~~~~~~~~---~~~~~~~l~~~~~~~~-~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~ 84 (237)
...+.++|+..|... +.+.+... ...+..++.......+ .+|||+|||+|.++..+++.+. +++|+|+|+.+++
T Consensus 10 ~~~~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~ 87 (216)
T 3ofk_A 10 VDNTYQSLERELAND-DPWRLDDNPFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIG 87 (216)
T ss_dssp CSSHHHHHHHHHTSS-SGGGTTTCHHHHHHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHH
T ss_pred ecchHHHHHHHhcCC-CCcccccCHhHHHHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHH
Confidence 345567899888764 22221111 1123445554444433 4999999999999999999875 9999999999999
Q ss_pred HHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 85 AMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 85 ~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.|+++....++++++++|+.+++ +.++||+|++..+++|+ .++.....+++++.++|+|||.+++.+...
T Consensus 88 ~a~~~~~~~~~~~~~~~d~~~~~--~~~~fD~v~~~~~l~~~----~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 157 (216)
T 3ofk_A 88 RACQRTKRWSHISWAATDILQFS--TAELFDLIVVAEVLYYL----EDMTQMRTAIDNMVKMLAPGGHLVFGSARD 157 (216)
T ss_dssp HHHHHTTTCSSEEEEECCTTTCC--CSCCEEEEEEESCGGGS----SSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred HHHHhcccCCCeEEEEcchhhCC--CCCCccEEEEccHHHhC----CCHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 99999976678999999999886 57899999999999998 345666889999999999999999977443
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-18 Score=134.42 Aligned_cols=132 Identities=20% Similarity=0.305 Sum_probs=105.6
Q ss_pred CCCChhhhHHHhccCCCCceeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHH
Q 026558 9 AYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMK 88 (237)
Q Consensus 9 ~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~ 88 (237)
-+..+.||+..|..... . ..++.......+.+|||+|||+|.++..+++.+. +++++|+|+.+++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~-------~---~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~ 72 (199)
T 2xvm_A 4 VIRDENYFTDKYELTRT-------H---SEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVER 72 (199)
T ss_dssp CCCCTTHHHHHHTCCCC-------C---HHHHHHTTTSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred EEechHHHhhhhccccc-------c---HHHHHHhhccCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHH
Confidence 46778899998875411 1 2223322222334999999999999999999865 99999999999999998
Q ss_pred HcC--CCCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 89 KYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 89 ~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+.. +.+++.+.++|+.+++ + .++||+|++..+++++ +.++...+++++.++|+|||.+++.+.
T Consensus 73 ~~~~~~~~~~~~~~~d~~~~~-~-~~~~D~v~~~~~l~~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (199)
T 2xvm_A 73 IKSIENLDNLHTRVVDLNNLT-F-DRQYDFILSTVVLMFL-----EAKTIPGLIANMQRCTKPGGYNLIVAA 137 (199)
T ss_dssp HHHHHTCTTEEEEECCGGGCC-C-CCCEEEEEEESCGGGS-----CGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHhCCCCCcEEEEcchhhCC-C-CCCceEEEEcchhhhC-----CHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence 874 3347999999999887 5 7889999999999988 556889999999999999999887653
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.9e-19 Score=140.11 Aligned_cols=135 Identities=27% Similarity=0.470 Sum_probs=99.7
Q ss_pred hhhhHHHhccCCCCceeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC
Q 026558 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN 92 (237)
Q Consensus 13 ~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~ 92 (237)
.+||+..+..... ....+...+...+.++. +|||+|||+|.++..+++.+. +++|+|+|+.+++.++++...
T Consensus 3 ~~yw~~~~~~~~~------~~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~ 74 (235)
T 3sm3_A 3 ESYWEKVSGKNIP------SSLDLYPIIHNYLQEDD-EILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARS 74 (235)
T ss_dssp ---------------------CCCCTTHHHHCCTTC-EEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTC
T ss_pred hhHHHHHhhccCC------CHHHHHHHHHHhCCCCC-eEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHh
Confidence 5789887764421 12223444555566665 999999999999999999965 999999999999999998853
Q ss_pred C-------CCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 93 R-------PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 93 ~-------~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
. .++.+.++|+..++ ++.++||+|++..+++++ .++.....+++++.++|+|||++++.++..
T Consensus 75 ~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~----~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (235)
T 3sm3_A 75 PGLNQKTGGKAEFKVENASSLS-FHDSSFDFAVMQAFLTSV----PDPKERSRIIKEVFRVLKPGAYLYLVEFGQ 144 (235)
T ss_dssp CSCCSSSSCEEEEEECCTTSCC-SCTTCEEEEEEESCGGGC----CCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred cCCccccCcceEEEEecccccC-CCCCceeEEEEcchhhcC----CCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence 2 25789999999887 778899999999999998 445556699999999999999999987644
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.8e-19 Score=142.67 Aligned_cols=135 Identities=17% Similarity=0.226 Sum_probs=95.3
Q ss_pred ChhhhHHHhccCCCCceeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC
Q 026558 12 EPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS 91 (237)
Q Consensus 12 ~~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~ 91 (237)
++.||+..................+.+.+... .++ .+|||+|||+|.++..+++.+. +++|+|+|+.+++.|+++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~ 85 (250)
T 2p7i_A 9 DQEIKDTAGHKYAYNFDFDVMHPFMVRAFTPF-FRP-GNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLK 85 (250)
T ss_dssp --------------CHHHHTHHHHHHHHHGGG-CCS-SCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSC
T ss_pred CHHHHhhHHHHhcCccchhhHHHHHHHHHHhh-cCC-CcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhh
Confidence 35688776554422211100111122333322 233 3899999999999999999876 99999999999999999985
Q ss_pred CCCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHH-HhcCCCcEEEEEEcCC
Q 026558 92 NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVW-RVLKDKGVYILVTYGA 160 (237)
Q Consensus 92 ~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~-~~L~pgG~l~~~~~~~ 160 (237)
. ++.++++|+.++. ++++||+|++..+++|+ .+...+++++. ++|+|||++++.+...
T Consensus 86 ~--~v~~~~~d~~~~~--~~~~fD~v~~~~~l~~~-------~~~~~~l~~~~~~~LkpgG~l~i~~~~~ 144 (250)
T 2p7i_A 86 D--GITYIHSRFEDAQ--LPRRYDNIVLTHVLEHI-------DDPVALLKRINDDWLAEGGRLFLVCPNA 144 (250)
T ss_dssp S--CEEEEESCGGGCC--CSSCEEEEEEESCGGGC-------SSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred C--CeEEEEccHHHcC--cCCcccEEEEhhHHHhh-------cCHHHHHHHHHHHhcCCCCEEEEEcCCh
Confidence 4 7999999998873 57889999999999999 67789999999 9999999999988544
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-18 Score=136.45 Aligned_cols=115 Identities=13% Similarity=0.240 Sum_probs=98.5
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccE
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDS 116 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~ 116 (237)
..++.........+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++. +++.++++|+.+++ +++++||+
T Consensus 31 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~---~~~~~~~~d~~~~~-~~~~~fD~ 105 (203)
T 3h2b_A 31 RVLIEPWATGVDGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH---PSVTFHHGTITDLS-DSPKRWAG 105 (203)
T ss_dssp HHHHHHHHHHCCSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC---TTSEEECCCGGGGG-GSCCCEEE
T ss_pred HHHHHHHhccCCCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC---CCCeEEeCcccccc-cCCCCeEE
Confidence 4444444433244999999999999999999875 9999999999999999986 57999999999987 77899999
Q ss_pred EEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 117 I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
|++..+++++ +.++...+++++.++|+|||.+++.+....
T Consensus 106 v~~~~~l~~~-----~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 145 (203)
T 3h2b_A 106 LLAWYSLIHM-----GPGELPDALVALRMAVEDGGGLLMSFFSGP 145 (203)
T ss_dssp EEEESSSTTC-----CTTTHHHHHHHHHHTEEEEEEEEEEEECCS
T ss_pred EEehhhHhcC-----CHHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 9999999998 456889999999999999999999875543
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=141.08 Aligned_cols=117 Identities=22% Similarity=0.330 Sum_probs=99.3
Q ss_pred CcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccccc
Q 026558 33 YPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQ 110 (237)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~ 110 (237)
...+..++.........+|||+|||+|.++..+++.+. +++|+|+|+.+++.|+++.. +.+++.++++|+.+++ ++
T Consensus 23 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~-~~ 100 (260)
T 1vl5_A 23 GSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP-FT 100 (260)
T ss_dssp CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC-SC
T ss_pred HHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCC-CC
Confidence 34456666665444445999999999999999999875 99999999999999999873 3357999999999987 88
Q ss_pred CCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 111 ~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+++||+|++..+++++ .+...+++++.++|+|||++++...
T Consensus 101 ~~~fD~V~~~~~l~~~-------~d~~~~l~~~~r~LkpgG~l~~~~~ 141 (260)
T 1vl5_A 101 DERFHIVTCRIAAHHF-------PNPASFVSEAYRVLKKGGQLLLVDN 141 (260)
T ss_dssp TTCEEEEEEESCGGGC-------SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCEEEEEEhhhhHhc-------CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 8999999999999999 6778999999999999999999754
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-18 Score=135.91 Aligned_cols=116 Identities=13% Similarity=0.230 Sum_probs=97.4
Q ss_pred CcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCC
Q 026558 33 YPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTG 112 (237)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~ 112 (237)
...+..++.........+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++.. .++++.++|+.+++ ++ +
T Consensus 31 ~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~--~~~~~~~~d~~~~~-~~-~ 105 (220)
T 3hnr_A 31 FAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP--KEFSITEGDFLSFE-VP-T 105 (220)
T ss_dssp TTTHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC--TTCCEESCCSSSCC-CC-S
T ss_pred HHHHHHHHHHhhccCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC--CceEEEeCChhhcC-CC-C
Confidence 44455666665444445999999999999999999865 99999999999999999985 57899999999987 55 8
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+||+|++..+++++ +......+++++.++|+|||.+++.+.
T Consensus 106 ~fD~v~~~~~l~~~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~ 146 (220)
T 3hnr_A 106 SIDTIVSTYAFHHL-----TDDEKNVAIAKYSQLLNKGGKIVFADT 146 (220)
T ss_dssp CCSEEEEESCGGGS-----CHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CeEEEEECcchhcC-----ChHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 99999999999998 333444599999999999999999874
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=141.21 Aligned_cols=104 Identities=17% Similarity=0.340 Sum_probs=94.8
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~ 128 (237)
.+|||+|||+|.++..+++....+++|+|+|+.+++.|+++....++++++++|+.+++ +++++||+|++..+++|+
T Consensus 57 ~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~-- 133 (266)
T 3ujc_A 57 SKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKE-FPENNFDLIYSRDAILAL-- 133 (266)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCC-CCTTCEEEEEEESCGGGS--
T ss_pred CEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCC-CCCCcEEEEeHHHHHHhc--
Confidence 49999999999999999987334999999999999999999865578999999999987 778999999999999998
Q ss_pred CCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 129 GSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+..+...+++++.++|+|||.+++.+.
T Consensus 134 ---~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (266)
T 3ujc_A 134 ---SLENKNKLFQKCYKWLKPTGTLLITDY 160 (266)
T ss_dssp ---CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---ChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 678999999999999999999999874
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-19 Score=146.84 Aligned_cols=145 Identities=16% Similarity=0.175 Sum_probs=103.2
Q ss_pred CCCCChhhhHHHhccCCCCc------eeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHH
Q 026558 8 QAYGEPWYWDNRYAHESGPF------DWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSV 81 (237)
Q Consensus 8 ~~~~~~~~w~~~y~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~ 81 (237)
+.|+...||+.+|......+ +| ....+.+++.....++ .+|||||||+|.++..++..+..+|+|+|+|+.
T Consensus 13 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g-~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~ 89 (263)
T 2a14_A 13 KHFLPRDYLATYYSFDGSPSPEAEMLKF--NLECLHKTFGPGGLQG-DTLIDIGSGPTIYQVLAACDSFQDITLSDFTDR 89 (263)
T ss_dssp HHCCHHHHHHHHCCCCCSCCHHHHHHHH--HHHHHHHHHSTTSCCE-EEEEESSCTTCCGGGTTGGGTEEEEEEEESCHH
T ss_pred hccCHHHHHHHhcCCCcccchhhHHHHH--HHHHHHHHhcCCCCCC-ceEEEeCCCccHHHHHHHHhhhcceeeccccHH
Confidence 35777889999998664331 22 1111222222111222 389999999999888877777558999999999
Q ss_pred HHHHHHHHcCCCC-------------------------------CcE-EEEccccccccc---cCCCccEEEecccccee
Q 026558 82 VIEAMMKKYSNRP-------------------------------QLK-YIKMDVRQMDEF---QTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 82 ~~~~a~~~~~~~~-------------------------------~~~-~~~~d~~~~~~~---~~~~fD~I~~~~~l~~~ 126 (237)
|++.|+++++..+ ++. ++++|+.+...+ ..++||+|+++.++|++
T Consensus 90 ~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i 169 (263)
T 2a14_A 90 NREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECA 169 (263)
T ss_dssp HHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHH
T ss_pred HHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHh
Confidence 9999998763211 122 889999874212 25689999999999985
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
. .+.++...+++++.++|||||+|++...
T Consensus 170 ~---~~~~~~~~~l~~i~r~LKPGG~li~~~~ 198 (263)
T 2a14_A 170 C---CSLDAYRAALCNLASLLKPGGHLVTTVT 198 (263)
T ss_dssp C---SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred c---CCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 1 1346788999999999999999999864
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-17 Score=128.71 Aligned_cols=113 Identities=21% Similarity=0.402 Sum_probs=97.0
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccE
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDS 116 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~ 116 (237)
..++...++++. +|||+|||+|.++..+++.+. +++++|+++.+++.++++. +++.+.++|+.+.+ ++.++||+
T Consensus 37 ~~~l~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~---~~~~~~~~d~~~~~-~~~~~~D~ 110 (195)
T 3cgg_A 37 ARLIDAMAPRGA-KILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDF---PEARWVVGDLSVDQ-ISETDFDL 110 (195)
T ss_dssp HHHHHHHSCTTC-EEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC---TTSEEEECCTTTSC-CCCCCEEE
T ss_pred HHHHHHhccCCC-eEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhC---CCCcEEEcccccCC-CCCCceeE
Confidence 456666666555 999999999999999999865 9999999999999999997 46899999999876 66789999
Q ss_pred EEec-cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 117 VVDK-GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 117 I~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
|++. .+++++ +......+++++.++|+|||.+++.....
T Consensus 111 i~~~~~~~~~~-----~~~~~~~~l~~~~~~l~~~G~l~~~~~~~ 150 (195)
T 3cgg_A 111 IVSAGNVMGFL-----AEDGREPALANIHRALGADGRAVIGFGAG 150 (195)
T ss_dssp EEECCCCGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred EEECCcHHhhc-----ChHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 9998 677776 56778899999999999999999877544
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.3e-18 Score=135.45 Aligned_cols=106 Identities=13% Similarity=0.202 Sum_probs=91.5
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc---cc-CCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQ-TGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~---~~-~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++.+. +++|+|+|+.+++.|+++... .++.++++|+.+++. +. ...||+|++..+++
T Consensus 58 ~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~ 135 (245)
T 3ggd_A 58 LPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTA-ANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFH 135 (245)
T ss_dssp SCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCC-TTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSST
T ss_pred CeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcc-cCceEEECcccccccccccccccCccEEEEcchhh
Confidence 4999999999999999999987 999999999999999999843 589999999988651 11 13599999999999
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
++ +..+...+++++.++|+|||++++..+..+
T Consensus 136 ~~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 167 (245)
T 3ggd_A 136 HI-----PVEKRELLGQSLRILLGKQGAMYLIELGTG 167 (245)
T ss_dssp TS-----CGGGHHHHHHHHHHHHTTTCEEEEEEECTT
T ss_pred cC-----CHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 98 556889999999999999999988876554
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.9e-18 Score=137.59 Aligned_cols=115 Identities=15% Similarity=0.202 Sum_probs=98.0
Q ss_pred HHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEE
Q 026558 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSV 117 (237)
Q Consensus 38 ~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I 117 (237)
.++.........+|||+|||+|.++..+++.+..+++++|+|+.+++.|+++.....++.++++|+.+++ ++.++||+|
T Consensus 84 ~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v 162 (254)
T 1xtp_A 84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETAT-LPPNTYDLI 162 (254)
T ss_dssp HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCC-CCSSCEEEE
T ss_pred HHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCC-CCCCCeEEE
Confidence 3444433333349999999999999999988755899999999999999999865567899999999887 777899999
Q ss_pred EeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
++..+++++ +..+...+++++.++|+|||++++.+.
T Consensus 163 ~~~~~l~~~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 163 VIQWTAIYL-----TDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp EEESCGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEcchhhhC-----CHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 999999998 556789999999999999999999874
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-18 Score=137.73 Aligned_cols=139 Identities=17% Similarity=0.255 Sum_probs=98.6
Q ss_pred CCCCCCCCCChhhhHHHhccCCCCceeecCCcChHHHHHhhC---CCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCC
Q 026558 3 MGTTTQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYV---PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDIS 79 (237)
Q Consensus 3 ~~~~~~~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s 79 (237)
|+....+..+..||......... ....+...+...+ .++ .+|||+|||+|.++..+++.+. +++|+|+|
T Consensus 1 Ms~~~~d~~~~~~y~~~~~~~~~------~~~~~~~~~~~~l~~~~~~-~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s 72 (240)
T 3dli_A 1 MSLSGTDIHTSDYYFLFEEKFRG------SRELVKARLRRYIPYFKGC-RRVLDIGCGRGEFLELCKEEGI-ESIGVDIN 72 (240)
T ss_dssp -----------CHHHHHHHHHTC------CHHHHHHHHGGGGGGTTTC-SCEEEETCTTTHHHHHHHHHTC-CEEEECSC
T ss_pred CCcCCCCcchHHHHHHHHHHhCC------CHHHHHHHHHHHHhhhcCC-CeEEEEeCCCCHHHHHHHhCCC-cEEEEECC
Confidence 44444555566677654443211 1122233333222 233 4999999999999999999875 89999999
Q ss_pred HHHHHHHHHHcCCCCCcEEEEccccccc-cccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 80 SVVIEAMMKKYSNRPQLKYIKMDVRQMD-EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 80 ~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+.+++.++++ +.++.+|+.+.. .+++++||+|++..+++|+ +..+...+++++.++|+|||++++.+.
T Consensus 73 ~~~~~~a~~~------~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~ 141 (240)
T 3dli_A 73 EDMIKFCEGK------FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHL-----DPERLFELLSLCYSKMKYSSYIVIESP 141 (240)
T ss_dssp HHHHHHHHTT------SEEECSCHHHHHHTSCTTCBSEEEEESCGGGS-----CGGGHHHHHHHHHHHBCTTCCEEEEEE
T ss_pred HHHHHHHHhh------cceeeccHHHHhhhcCCCCeeEEEECCchhhC-----CcHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9999999977 688999998752 3778999999999999999 445779999999999999999999876
Q ss_pred CC
Q 026558 159 GA 160 (237)
Q Consensus 159 ~~ 160 (237)
..
T Consensus 142 ~~ 143 (240)
T 3dli_A 142 NP 143 (240)
T ss_dssp CT
T ss_pred Cc
Confidence 54
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-18 Score=139.28 Aligned_cols=115 Identities=17% Similarity=0.253 Sum_probs=98.2
Q ss_pred ChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCc
Q 026558 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSF 114 (237)
Q Consensus 35 ~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~f 114 (237)
.+.+++....+++. +|||+|||+|.++..+++.+. +++|+|+|+.+++.|+++. +++.++++|+.+++ + .++|
T Consensus 39 ~~~~~l~~~~~~~~-~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~---~~~~~~~~d~~~~~-~-~~~f 111 (263)
T 3pfg_A 39 DLAALVRRHSPKAA-SLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRN---PDAVLHHGDMRDFS-L-GRRF 111 (263)
T ss_dssp HHHHHHHHHCTTCC-EEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHC---TTSEEEECCTTTCC-C-SCCE
T ss_pred HHHHHHHhhCCCCC-cEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhC---CCCEEEECChHHCC-c-cCCc
Confidence 34555665555554 999999999999999999875 9999999999999999997 47999999999987 4 7899
Q ss_pred cEEEecc-ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 115 DSVVDKG-TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 115 D~I~~~~-~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
|+|++.. +++++ .++++...+++++.++|+|||.+++..+..
T Consensus 112 D~v~~~~~~l~~~----~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 154 (263)
T 3pfg_A 112 SAVTCMFSSIGHL----AGQAELDAALERFAAHVLPDGVVVVEPWWF 154 (263)
T ss_dssp EEEEECTTGGGGS----CHHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred CEEEEcCchhhhc----CCHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 9999998 99988 445688899999999999999999975433
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.7e-18 Score=135.19 Aligned_cols=112 Identities=19% Similarity=0.363 Sum_probs=95.8
Q ss_pred HHHhhCCC-CCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEE
Q 026558 39 LIKLYVPS-HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSV 117 (237)
Q Consensus 39 ~l~~~~~~-~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I 117 (237)
.+...++. ...+|||+|||+|.++..+++.+..+++|+|+|+.+++.++++... .++.+.++|+.+++ ++.++||+|
T Consensus 34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~-~~~~~fD~v 111 (243)
T 3bkw_A 34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD-TGITYERADLDKLH-LPQDSFDLA 111 (243)
T ss_dssp HHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS-SSEEEEECCGGGCC-CCTTCEEEE
T ss_pred HHHHhccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc-CCceEEEcChhhcc-CCCCCceEE
Confidence 34444442 3349999999999999999998755999999999999999999854 47899999999887 778899999
Q ss_pred EeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
++..+++++ .+...+++++.++|+|||++++.+..
T Consensus 112 ~~~~~l~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 112 YSSLALHYV-------EDVARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp EEESCGGGC-------SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEecccccc-------chHHHHHHHHHHhcCcCcEEEEEeCC
Confidence 999999998 67889999999999999999997743
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-18 Score=139.82 Aligned_cols=105 Identities=14% Similarity=0.212 Sum_probs=91.3
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--CCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+|||+|||+|.++..+++.+..+++++|+|+.+++.|++++.. ..++.++++|+.+++ ++.++||+|++..+++++
T Consensus 81 ~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~ 159 (241)
T 2ex4_A 81 SCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT-PEPDSYDVIWIQWVIGHL 159 (241)
T ss_dssp SEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC-CCSSCEEEEEEESCGGGS
T ss_pred CEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcC-CCCCCEEEEEEcchhhhC
Confidence 49999999999999999988756999999999999999999854 236889999998887 667789999999999998
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+......+++++.++|+|||++++.+..
T Consensus 160 -----~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 187 (241)
T 2ex4_A 160 -----TDQHLAEFLRRCKGSLRPNGIIVIKDNM 187 (241)
T ss_dssp -----CHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -----CHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 4445679999999999999999997743
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-18 Score=135.33 Aligned_cols=112 Identities=17% Similarity=0.283 Sum_probs=95.3
Q ss_pred HHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCcc
Q 026558 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 39 ~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
++......+. +|||+|||+|.++..+++....+++|+|+|+.+++.|++++.. .+++.+.++|+.+++ +++++||
T Consensus 36 ~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D 113 (219)
T 3dlc_A 36 IINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIP-IEDNYAD 113 (219)
T ss_dssp HHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCS-SCTTCEE
T ss_pred HHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCC-CCccccc
Confidence 3333333444 9999999999999999987434999999999999999999742 247999999999987 7789999
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+|++..+++++ .+...+++++.++|+|||.+++....
T Consensus 114 ~v~~~~~l~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~ 150 (219)
T 3dlc_A 114 LIVSRGSVFFW-------EDVATAFREIYRILKSGGKTYIGGGF 150 (219)
T ss_dssp EEEEESCGGGC-------SCHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EEEECchHhhc-------cCHHHHHHHHHHhCCCCCEEEEEecc
Confidence 99999999998 78889999999999999999998643
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=9.1e-19 Score=142.07 Aligned_cols=145 Identities=15% Similarity=0.207 Sum_probs=105.1
Q ss_pred CCChhhhHHHhccCCCCcee--ecCCc--ChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHH
Q 026558 10 YGEPWYWDNRYAHESGPFDW--YQKYP--SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEA 85 (237)
Q Consensus 10 ~~~~~~w~~~y~~~~~~~~~--~~~~~--~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~ 85 (237)
|.+..||+.+|......+.. ...+. .+..++.. ...++.+|||+|||+|.++..+++.+..+++|+|+|+.+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~ 94 (265)
T 2i62_A 16 FNPRDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCL-GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWE 94 (265)
T ss_dssp CCHHHHHHHHHCCCSSCHHHHHHHHHHHHHHHHHHHS-SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHH
T ss_pred cCHHHHHHHHhCcCCcchhHHHHHHhhHHHHHHHhcc-cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHH
Confidence 56677899888766444310 00000 11233322 112223899999999999999988875589999999999999
Q ss_pred HHHHcCCCCC-------------------------------c-EEEEccccccccccC---CCccEEEeccccceeccCC
Q 026558 86 MMKKYSNRPQ-------------------------------L-KYIKMDVRQMDEFQT---GSFDSVVDKGTLDSLLCGS 130 (237)
Q Consensus 86 a~~~~~~~~~-------------------------------~-~~~~~d~~~~~~~~~---~~fD~I~~~~~l~~~~~~~ 130 (237)
|++++...++ + .+.++|+.+...++. ++||+|++..+++++.
T Consensus 95 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~--- 171 (265)
T 2i62_A 95 LQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAAC--- 171 (265)
T ss_dssp HHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC---
T ss_pred HHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhc---
Confidence 9998865332 6 899999988653345 7899999999998431
Q ss_pred CChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 131 NSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 131 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
....+...+++++.++|+|||++++...
T Consensus 172 ~~~~~~~~~l~~~~~~LkpgG~li~~~~ 199 (265)
T 2i62_A 172 PDLPAYRTALRNLGSLLKPGGFLVMVDA 199 (265)
T ss_dssp SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence 1126889999999999999999999874
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.2e-18 Score=139.98 Aligned_cols=115 Identities=20% Similarity=0.379 Sum_probs=97.8
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccccccCCC
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~ 113 (237)
..++.....++ .+|||+|||+|.++..+++.+. +++|+|+|+.+++.|++++... +++.++++|+.+++.+.+++
T Consensus 59 ~~~l~~~~~~~-~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 136 (285)
T 4htf_A 59 DRVLAEMGPQK-LRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETP 136 (285)
T ss_dssp HHHHHHTCSSC-CEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSC
T ss_pred HHHHHhcCCCC-CEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCC
Confidence 34455444444 4999999999999999999965 9999999999999999997432 57899999999887667899
Q ss_pred ccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 114 fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
||+|++..+++++ .+...+++++.++|+|||++++.+...
T Consensus 137 fD~v~~~~~l~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (285)
T 4htf_A 137 VDLILFHAVLEWV-------ADPRSVLQTLWSVLRPGGVLSLMFYNA 176 (285)
T ss_dssp EEEEEEESCGGGC-------SCHHHHHHHHHHTEEEEEEEEEEEEBH
T ss_pred ceEEEECchhhcc-------cCHHHHHHHHHHHcCCCeEEEEEEeCC
Confidence 9999999999999 677899999999999999999987543
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=127.02 Aligned_cols=97 Identities=19% Similarity=0.397 Sum_probs=87.4
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~ 128 (237)
.+|||+|||+|.++..+++.+. +++++|+++.+++.++++. +++++..+| .+ +++++||+|++..+++++
T Consensus 19 ~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~---~~v~~~~~d---~~-~~~~~~D~v~~~~~l~~~-- 88 (170)
T 3i9f_A 19 GVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKF---DSVITLSDP---KE-IPDNSVDFILFANSFHDM-- 88 (170)
T ss_dssp EEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHHC---TTSEEESSG---GG-SCTTCEEEEEEESCSTTC--
T ss_pred CeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHhC---CCcEEEeCC---CC-CCCCceEEEEEccchhcc--
Confidence 4999999999999999999875 9999999999999999993 689999998 44 667899999999999998
Q ss_pred CCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 129 GSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.+...+++++.++|+|||++++.++..
T Consensus 89 -----~~~~~~l~~~~~~L~pgG~l~~~~~~~ 115 (170)
T 3i9f_A 89 -----DDKQHVISEVKRILKDDGRVIIIDWRK 115 (170)
T ss_dssp -----SCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred -----cCHHHHHHHHHHhcCCCCEEEEEEcCc
Confidence 678899999999999999999987544
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-17 Score=130.68 Aligned_cols=103 Identities=17% Similarity=0.312 Sum_probs=89.1
Q ss_pred CcEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcCCCC-------CcEEEEccccccccccCCCccEEEec
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRP-------QLKYIKMDVRQMDEFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~d~~~~~~~~~~~fD~I~~~ 120 (237)
.+|||+|||+|.++..+++.+. .+++|+|+|+.+++.|++++.... +++++++|+...+ ...++||+|++.
T Consensus 31 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~ 109 (217)
T 3jwh_A 31 RRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQD-KRFHGYDAATVI 109 (217)
T ss_dssp CEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCC-GGGCSCSEEEEE
T ss_pred CEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccc-ccCCCcCEEeeH
Confidence 4999999999999999999863 599999999999999999975322 7999999997665 566899999999
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+++++ +......+++++.++|+|||++++..
T Consensus 110 ~~l~~~-----~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 110 EVIEHL-----DLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp SCGGGC-----CHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred HHHHcC-----CHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 999998 55567899999999999999776655
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.75 E-value=6.9e-18 Score=131.67 Aligned_cols=133 Identities=20% Similarity=0.333 Sum_probs=102.9
Q ss_pred hhHHHhccCCCCceeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-C
Q 026558 15 YWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-R 93 (237)
Q Consensus 15 ~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~ 93 (237)
||+..|......+.. .....+..++... . .. +|||+|||+|.++..+++.+. +++++|+|+.+++.|+++... .
T Consensus 1 ~W~~~y~~~~~~~~~-~~~~~l~~~~~~~-~-~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~ 75 (202)
T 2kw5_A 1 MWDERFSQSEYVYGT-EPNDFLVSVANQI-P-QG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKG 75 (202)
T ss_dssp CCCCCCCCCCCCCCC-CCCSSHHHHHHHS-C-SS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHT
T ss_pred Chhhhhcccchhhcc-CchHHHHHHHHhC-C-CC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcC
Confidence 677777765422221 2233456666543 3 33 899999999999999998875 999999999999999998742 1
Q ss_pred CCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 94 PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 94 ~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.++.+.++|+.+.+ ++.++||+|++.. .++ +..+...+++++.++|+|||.+++.++..
T Consensus 76 ~~~~~~~~d~~~~~-~~~~~fD~v~~~~--~~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 134 (202)
T 2kw5_A 76 VKITTVQSNLADFD-IVADAWEGIVSIF--CHL-----PSSLRQQLYPKVYQGLKPGGVFILEGFAP 134 (202)
T ss_dssp CCEEEECCBTTTBS-CCTTTCSEEEEEC--CCC-----CHHHHHHHHHHHHTTCCSSEEEEEEEECT
T ss_pred CceEEEEcChhhcC-CCcCCccEEEEEh--hcC-----CHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 37899999998887 7778999999953 333 45788999999999999999999988654
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-17 Score=132.03 Aligned_cols=105 Identities=23% Similarity=0.427 Sum_probs=92.9
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||+|||+|.++..+++.. ..+++|+|+|+.+++.|+++....+++.++++|+.+++ ++ ++||+|++..+++++
T Consensus 46 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~-~~fD~v~~~~~l~~~- 122 (234)
T 3dtn_A 46 PDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYD-FE-EKYDMVVSALSIHHL- 122 (234)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCC-CC-SCEEEEEEESCGGGS-
T ss_pred CeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccC-CC-CCceEEEEeCccccC-
Confidence 499999999999999999985 34999999999999999999876568999999999987 54 899999999999998
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+......+++++.++|+|||++++.+...
T Consensus 123 ----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 151 (234)
T 3dtn_A 123 ----EDEDKKELYKRSYSILKESGIFINADLVH 151 (234)
T ss_dssp ----CHHHHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred ----CHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence 44555679999999999999999987544
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.8e-18 Score=140.67 Aligned_cols=119 Identities=17% Similarity=0.289 Sum_probs=98.2
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC-----CCcEEEEcccccccccc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-----PQLKYIKMDVRQMDEFQ 110 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~~~~ 110 (237)
+..++......+. +|||||||+|.++..+++.+. +++|+|+|+.+++.|++++... .+++++++|+.+++ +
T Consensus 72 ~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~-~- 147 (299)
T 3g2m_A 72 AREFATRTGPVSG-PVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA-L- 147 (299)
T ss_dssp HHHHHHHHCCCCS-CEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC-C-
T ss_pred HHHHHHhhCCCCC-cEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC-c-
Confidence 4445555444444 999999999999999999875 9999999999999999998543 47899999999987 4
Q ss_pred CCCccEEEec-cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchh
Q 026558 111 TGSFDSVVDK-GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (237)
Q Consensus 111 ~~~fD~I~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 163 (237)
.++||+|++. .+++++ +.++...+++++.++|+|||++++.++.....
T Consensus 148 ~~~fD~v~~~~~~~~~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 196 (299)
T 3g2m_A 148 DKRFGTVVISSGSINEL-----DEADRRGLYASVREHLEPGGKFLLSLAMSEAA 196 (299)
T ss_dssp SCCEEEEEECHHHHTTS-----CHHHHHHHHHHHHHHEEEEEEEEEEEECCHHH
T ss_pred CCCcCEEEECCcccccC-----CHHHHHHHHHHHHHHcCCCcEEEEEeecCccc
Confidence 7899988865 566666 56678999999999999999999988766543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=9.3e-18 Score=134.57 Aligned_cols=115 Identities=20% Similarity=0.284 Sum_probs=97.5
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCc
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSF 114 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~f 114 (237)
..++.........+|||+|||+|.++..+++.+. +++++|+|+.+++.+++++. +.+++.+.++|+.+++ +++++|
T Consensus 11 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~f 88 (239)
T 1xxl_A 11 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP-FPDDSF 88 (239)
T ss_dssp HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC-SCTTCE
T ss_pred chHHHHhCcCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCC-CCCCcE
Confidence 3444444444445999999999999999999875 99999999999999998873 3357999999999887 778899
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
|+|++..+++++ .+...+++++.++|+|||++++.....
T Consensus 89 D~v~~~~~l~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 127 (239)
T 1xxl_A 89 DIITCRYAAHHF-------SDVRKAVREVARVLKQDGRFLLVDHYA 127 (239)
T ss_dssp EEEEEESCGGGC-------SCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred EEEEECCchhhc-------cCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 999999999998 678899999999999999999976543
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-17 Score=130.50 Aligned_cols=103 Identities=15% Similarity=0.297 Sum_probs=88.7
Q ss_pred CcEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcCCC-------CCcEEEEccccccccccCCCccEEEec
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR-------PQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~d~~~~~~~~~~~fD~I~~~ 120 (237)
.+|||+|||+|.++..+++.+. .+++|+|+|+.+++.|++++... .+++++++|+...+ +..++||+|++.
T Consensus 31 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~ 109 (219)
T 3jwg_A 31 KKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRD-KRFSGYDAATVI 109 (219)
T ss_dssp CEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCC-GGGTTCSEEEEE
T ss_pred CEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccc-cccCCCCEEEEH
Confidence 4999999999999999998863 59999999999999999997532 17899999997766 667899999999
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+++++ +......+++++.++|+|||+++...
T Consensus 110 ~~l~~~-----~~~~~~~~l~~~~~~LkpgG~~i~~~ 141 (219)
T 3jwg_A 110 EVIEHL-----DENRLQAFEKVLFEFTRPQTVIVSTP 141 (219)
T ss_dssp SCGGGC-----CHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred HHHHhC-----CHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence 999999 45566899999999999999666554
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=131.55 Aligned_cols=110 Identities=25% Similarity=0.429 Sum_probs=93.9
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCcc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
+..++.. +.++. +|||+|||+|.++..+++.+. +++|+|+|+.+++.++++. ++.+..+|+.+++ ..++||
T Consensus 34 ~~~~~~~-~~~~~-~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~----~~~~~~~d~~~~~--~~~~fD 104 (211)
T 3e23_A 34 LTKFLGE-LPAGA-KILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL----GRPVRTMLFHQLD--AIDAYD 104 (211)
T ss_dssp HHHHHTT-SCTTC-EEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH----TSCCEECCGGGCC--CCSCEE
T ss_pred HHHHHHh-cCCCC-cEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc----CCceEEeeeccCC--CCCcEE
Confidence 3334433 34444 999999999999999999875 9999999999999999997 5788899998886 678999
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+|++..+++++ +.++...+++++.++|+|||++++....
T Consensus 105 ~v~~~~~l~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 143 (211)
T 3e23_A 105 AVWAHACLLHV-----PRDELADVLKLIWRALKPGGLFYASYKS 143 (211)
T ss_dssp EEEECSCGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEecCchhhc-----CHHHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence 99999999998 5568899999999999999999998643
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-17 Score=129.50 Aligned_cols=103 Identities=14% Similarity=0.144 Sum_probs=91.1
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~ 128 (237)
.+|||+|||+|.++..+++.+. +++|+|+|+.+++.+++ .+.++++++++|+.++ ++.++||+|++..+++++
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~--~~~~~~~~~~~d~~~~--~~~~~~D~v~~~~~l~~~-- 120 (218)
T 3ou2_A 48 GDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR--HGLDNVEFRQQDLFDW--TPDRQWDAVFFAHWLAHV-- 120 (218)
T ss_dssp SEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG--GCCTTEEEEECCTTSC--CCSSCEEEEEEESCGGGS--
T ss_pred CeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh--cCCCCeEEEecccccC--CCCCceeEEEEechhhcC--
Confidence 3999999999999999999865 99999999999999998 3336899999999887 568899999999999998
Q ss_pred CCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 129 GSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
+......+++++.++|+|||.+++.+...+
T Consensus 121 ---~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 150 (218)
T 3ou2_A 121 ---PDDRFEAFWESVRSAVAPGGVVEFVDVTDH 150 (218)
T ss_dssp ---CHHHHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred ---CHHHHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 444568999999999999999999987664
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=6.9e-18 Score=137.43 Aligned_cols=101 Identities=17% Similarity=0.241 Sum_probs=89.7
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++.+..+++|+|+|+.+++.|++++. +. ++++++++|+.+++ ++.++||+|++..++++
T Consensus 48 ~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~i~~~~~~~~ 126 (267)
T 3kkz_A 48 SLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP-FRNEELDLIWSEGAIYN 126 (267)
T ss_dssp CEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-CCTTCEEEEEESSCGGG
T ss_pred CEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCC-CCCCCEEEEEEcCCcee
Confidence 4999999999999999999865699999999999999999874 22 46999999999887 77889999999999988
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+ +...+++++.++|+|||++++.+.
T Consensus 127 ~--------~~~~~l~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 127 I--------GFERGLNEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp T--------CHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred c--------CHHHHHHHHHHHcCCCCEEEEEEe
Confidence 6 357899999999999999999764
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=135.99 Aligned_cols=110 Identities=24% Similarity=0.459 Sum_probs=93.8
Q ss_pred HHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEE
Q 026558 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSV 117 (237)
Q Consensus 38 ~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I 117 (237)
.++.........+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++. +++.+.++|+.+++ + +++||+|
T Consensus 48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~---~~~~~~~~d~~~~~-~-~~~fD~v 121 (279)
T 3ccf_A 48 DLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQNY---PHLHFDVADARNFR-V-DKPLDAV 121 (279)
T ss_dssp HHHHHHCCCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC---TTSCEEECCTTTCC-C-SSCEEEE
T ss_pred HHHHHhCCCCCCEEEEecCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHhhC---CCCEEEECChhhCC-c-CCCcCEE
Confidence 344443333334999999999999999999654 9999999999999999987 67899999999887 5 5789999
Q ss_pred EeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
++..+++++ .+...+++++.++|+|||++++.+...
T Consensus 122 ~~~~~l~~~-------~d~~~~l~~~~~~LkpgG~l~~~~~~~ 157 (279)
T 3ccf_A 122 FSNAMLHWV-------KEPEAAIASIHQALKSGGRFVAEFGGK 157 (279)
T ss_dssp EEESCGGGC-------SCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred EEcchhhhC-------cCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 999999998 678899999999999999999977543
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=131.41 Aligned_cols=118 Identities=14% Similarity=0.196 Sum_probs=99.6
Q ss_pred ChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccccc
Q 026558 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQ 110 (237)
Q Consensus 35 ~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~ 110 (237)
....++.........+|||+|||+|.++..+++.+ ..+++|+|+|+.+++.+++++. +.+++.+.++|+.+++ ++
T Consensus 25 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-~~ 103 (219)
T 3dh0_A 25 DPEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIP-LP 103 (219)
T ss_dssp CHHHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCS-SC
T ss_pred CHHHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCC-CC
Confidence 34556665544444599999999999999999885 3499999999999999999874 3347999999999887 77
Q ss_pred CCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 111 ~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+++||+|++..+++++ .+...+++++.++|+|||.+++.++..
T Consensus 104 ~~~fD~v~~~~~l~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~ 146 (219)
T 3dh0_A 104 DNTVDFIFMAFTFHEL-------SEPLKFLEELKRVAKPFAYLAIIDWKK 146 (219)
T ss_dssp SSCEEEEEEESCGGGC-------SSHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred CCCeeEEEeehhhhhc-------CCHHHHHHHHHHHhCCCeEEEEEEecc
Confidence 8899999999999998 678999999999999999999987544
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-17 Score=135.90 Aligned_cols=102 Identities=15% Similarity=0.143 Sum_probs=90.6
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--C-CCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--N-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++....+++|+|+|+.+++.|+++.. + .+++.++++|+.+++ +++++||+|++..+++|
T Consensus 84 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~ 162 (297)
T 2o57_A 84 AKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP-CEDNSYDFIWSQDAFLH 162 (297)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS-SCTTCEEEEEEESCGGG
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC-CCCCCEeEEEecchhhh
Confidence 4999999999999999998732499999999999999998873 2 247999999999987 77889999999999999
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+ .+...+++++.++|+|||++++.+.
T Consensus 163 ~-------~~~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 163 S-------PDKLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp C-------SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c-------CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 8 5689999999999999999999874
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-17 Score=135.44 Aligned_cols=118 Identities=21% Similarity=0.342 Sum_probs=98.2
Q ss_pred CcChHHHHHhhCC-CCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccc
Q 026558 33 YPSLAPLIKLYVP-SHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDE 108 (237)
Q Consensus 33 ~~~~~~~l~~~~~-~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~ 108 (237)
...+..++..... .++.+|||+|||+|.++..+++.+ ..+++|+|+|+.+++.+++++. +.+++.+..+|+.+++
T Consensus 22 ~~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~- 100 (276)
T 3mgg_A 22 AETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLP- 100 (276)
T ss_dssp -CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCC-
T ss_pred HHHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCC-
Confidence 3445556655443 222499999999999999999885 3599999999999999999874 3358999999999887
Q ss_pred ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 109 ~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
++.++||+|++..+++++ .+...+++++.++|+|||++++.+.
T Consensus 101 ~~~~~fD~v~~~~~l~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (276)
T 3mgg_A 101 FEDSSFDHIFVCFVLEHL-------QSPEEALKSLKKVLKPGGTITVIEG 143 (276)
T ss_dssp SCTTCEEEEEEESCGGGC-------SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCeeEEEEechhhhc-------CCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 778999999999999999 6677999999999999999999763
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=135.31 Aligned_cols=112 Identities=16% Similarity=0.122 Sum_probs=93.2
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEccccccccccCCC
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~~~~~~ 113 (237)
..++......+..+|||+|||+|.++..+++....+++|+|+|+.+++.|+++.. +. .++.+.++|+.+++ + +++
T Consensus 26 ~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~-~~~ 103 (256)
T 1nkv_A 26 ATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV-A-NEK 103 (256)
T ss_dssp HHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC-C-SSC
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCC-c-CCC
Confidence 3344443323334999999999999999998754499999999999999999874 22 47999999999987 5 789
Q ss_pred ccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 114 fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
||+|++..+++++ .+...+++++.++|+|||++++.+
T Consensus 104 fD~V~~~~~~~~~-------~~~~~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 104 CDVAACVGATWIA-------GGFAGAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp EEEEEEESCGGGT-------SSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred CCEEEECCChHhc-------CCHHHHHHHHHHHcCCCeEEEEec
Confidence 9999999999988 567899999999999999999875
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-17 Score=126.43 Aligned_cols=121 Identities=10% Similarity=0.093 Sum_probs=90.2
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCc
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSF 114 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~f 114 (237)
..++...+.++. +|||+|||+|.++..+++.+ .+++|+|+|+.+++.|+++.. +..++++++.|...++.+.+++|
T Consensus 13 ~~~l~~~~~~~~-~vLDiGcG~G~~~~~la~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~f 90 (185)
T 3mti_A 13 HDFLAEVLDDES-IVVDATMGNGNDTAFLAGLS-KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPI 90 (185)
T ss_dssp HHHHHTTCCTTC-EEEESCCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCE
T ss_pred HHHHHHhCCCCC-EEEEEcCCCCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCc
Confidence 444555555555 99999999999999999985 599999999999999999984 33678999988887654557889
Q ss_pred cEEEecc-ccceec-cCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 115 DSVVDKG-TLDSLL-CGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 115 D~I~~~~-~l~~~~-~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
|+|+++. .+.... .-.........+++++.++|+|||++++..+.
T Consensus 91 D~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 91 RAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp EEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 9999873 222100 00012356778899999999999999998764
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=138.20 Aligned_cols=115 Identities=14% Similarity=0.288 Sum_probs=95.4
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHcCC----CCCcEEEEccccccccc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYSN----RPQLKYIKMDVRQMDEF 109 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~--~~~~~~~vD~s~~~~~~a~~~~~~----~~~~~~~~~d~~~~~~~ 109 (237)
+.+.+.........+|||+|||+|.++..+++. ...+++|+|+|+.+++.|++++.. ..+++++++|+.+++ +
T Consensus 25 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~-~ 103 (299)
T 3g5t_A 25 FYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFK-F 103 (299)
T ss_dssp HHHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCG-G
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCC-c
Confidence 555666554444459999999999999999963 345999999999999999998632 368999999999887 6
Q ss_pred cC------CCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 110 QT------GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 110 ~~------~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
.. ++||+|++..+++++ +...+++++.++|+|||.+++.++.
T Consensus 104 ~~~~~~~~~~fD~V~~~~~l~~~--------~~~~~l~~~~~~LkpgG~l~i~~~~ 151 (299)
T 3g5t_A 104 LGADSVDKQKIDMITAVECAHWF--------DFEKFQRSAYANLRKDGTIAIWGYA 151 (299)
T ss_dssp GCTTTTTSSCEEEEEEESCGGGS--------CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cccccccCCCeeEEeHhhHHHHh--------CHHHHHHHHHHhcCCCcEEEEEecC
Confidence 55 899999999999875 5678999999999999999986543
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.7e-17 Score=128.59 Aligned_cols=121 Identities=13% Similarity=0.170 Sum_probs=91.4
Q ss_pred HHhhCCCCCCcEEEEccC-CchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC-CCcEEEEccccccccccCCCccEE
Q 026558 40 IKLYVPSHHQRILIVGCG-NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSV 117 (237)
Q Consensus 40 l~~~~~~~~~~iLdlG~G-~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~I 117 (237)
+...+.++. +|||+||| +|.++..+++....+++|+|+|+.+++.|++++... .+++++++|+..+..+++++||+|
T Consensus 49 ~~~~~~~~~-~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I 127 (230)
T 3evz_A 49 LKTFLRGGE-VALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVI 127 (230)
T ss_dssp HHTTCCSSC-EEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEE
T ss_pred hHhhcCCCC-EEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEE
Confidence 344444444 99999999 999999999883349999999999999999998421 279999999865544567899999
Q ss_pred Eeccccceecc------------CCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 118 VDKGTLDSLLC------------GSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 118 ~~~~~l~~~~~------------~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
+++.++++... +..+......+++++.++|+|||++++.....+
T Consensus 128 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 183 (230)
T 3evz_A 128 FSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE 183 (230)
T ss_dssp EECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH
T ss_pred EECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH
Confidence 99977654310 111224458899999999999999999775443
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=135.50 Aligned_cols=112 Identities=17% Similarity=0.298 Sum_probs=94.4
Q ss_pred hHHHHHhhCC-CCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCc
Q 026558 36 LAPLIKLYVP-SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSF 114 (237)
Q Consensus 36 ~~~~l~~~~~-~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~f 114 (237)
+.+.+...+. .+..+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++. +++++++|+.+++ +++++|
T Consensus 22 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~----~~~~~~~d~~~~~-~~~~~f 95 (261)
T 3ege_A 22 IVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAVVHP----QVEWFTGYAENLA-LPDKSV 95 (261)
T ss_dssp HHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSCCCT----TEEEECCCTTSCC-SCTTCB
T ss_pred HHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHHhcc----CCEEEECchhhCC-CCCCCE
Confidence 4444444443 2334999999999999999998764 9999999999999877664 8999999999887 778999
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
|+|++..+++|+ .+...+++++.++|+ ||.+++.++..+
T Consensus 96 D~v~~~~~l~~~-------~~~~~~l~~~~~~Lk-gG~~~~~~~~~~ 134 (261)
T 3ege_A 96 DGVISILAIHHF-------SHLEKSFQEMQRIIR-DGTIVLLTFDIR 134 (261)
T ss_dssp SEEEEESCGGGC-------SSHHHHHHHHHHHBC-SSCEEEEEECGG
T ss_pred eEEEEcchHhhc-------cCHHHHHHHHHHHhC-CcEEEEEEcCCc
Confidence 999999999999 788999999999999 998888876543
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.8e-17 Score=129.04 Aligned_cols=109 Identities=23% Similarity=0.363 Sum_probs=94.3
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccE
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDS 116 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~ 116 (237)
..++.....++ .+|||+|||+|.++..+ +..+++|+|+|+.+++.++++. +++.++++|+.+++ +++++||+
T Consensus 27 ~~~l~~~~~~~-~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~d~~~~~-~~~~~fD~ 98 (211)
T 2gs9_A 27 ERALKGLLPPG-ESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA---PEATWVRAWGEALP-FPGESFDV 98 (211)
T ss_dssp HHHHHTTCCCC-SEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC---TTSEEECCCTTSCC-SCSSCEEE
T ss_pred HHHHHHhcCCC-CeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC---CCcEEEEcccccCC-CCCCcEEE
Confidence 44566665544 49999999999999887 3338999999999999999997 67899999999887 77889999
Q ss_pred EEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 117 I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
|++..+++++ .+...+++++.++|+|||.+++.+...
T Consensus 99 v~~~~~l~~~-------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 99 VLLFTTLEFV-------EDVERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp EEEESCTTTC-------SCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred EEEcChhhhc-------CCHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 9999999998 678899999999999999999988654
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-17 Score=134.74 Aligned_cols=102 Identities=22% Similarity=0.368 Sum_probs=90.7
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--C-CCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--N-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++....+++|+|+|+.+++.++++.. + ..++.+..+|+.+++ +++++||+|++..+++|
T Consensus 63 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~ 141 (273)
T 3bus_A 63 DRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP-FEDASFDAVWALESLHH 141 (273)
T ss_dssp CEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-SCTTCEEEEEEESCTTT
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCC-CCCCCccEEEEechhhh
Confidence 4999999999999999998644599999999999999999874 2 236999999999987 77889999999999999
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+ .+...+++++.++|+|||++++.+.
T Consensus 142 ~-------~~~~~~l~~~~~~L~pgG~l~i~~~ 167 (273)
T 3bus_A 142 M-------PDRGRALREMARVLRPGGTVAIADF 167 (273)
T ss_dssp S-------SCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred C-------CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 8 6678999999999999999998774
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.4e-17 Score=131.71 Aligned_cols=112 Identities=14% Similarity=0.189 Sum_probs=94.5
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSF 114 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~f 114 (237)
...++.........+|||+|||+|.++..+++.. ..+++++|+|+.+++.++++. +++.+.++|+.+++ ++++|
T Consensus 22 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~---~~~~~~~~d~~~~~--~~~~f 96 (259)
T 2p35_A 22 ARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL---PNTNFGKADLATWK--PAQKA 96 (259)
T ss_dssp HHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS---TTSEEEECCTTTCC--CSSCE
T ss_pred HHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---CCcEEEECChhhcC--ccCCc
Confidence 3444544433333599999999999999999873 349999999999999999984 68999999998876 57889
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
|+|++..+++++ .+...+++++.++|+|||.+++.+..
T Consensus 97 D~v~~~~~l~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 97 DLLYANAVFQWV-------PDHLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp EEEEEESCGGGS-------TTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred CEEEEeCchhhC-------CCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 999999999998 78899999999999999999998753
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.72 E-value=4.8e-17 Score=128.90 Aligned_cols=117 Identities=30% Similarity=0.482 Sum_probs=96.9
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccccCCCc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSF 114 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~f 114 (237)
+.+.+...+.++. +|||+|||+|.++..+++.+. +++++|+|+.+++.|+++... ..+++++++|+.+++ ++.++|
T Consensus 28 ~~~~l~~~~~~~~-~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~~ 104 (227)
T 1ve3_A 28 LEPLLMKYMKKRG-KVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS-FEDKTF 104 (227)
T ss_dssp HHHHHHHSCCSCC-EEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCC-SCTTCE
T ss_pred HHHHHHHhcCCCC-eEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCC-CCCCcE
Confidence 4445555555544 999999999999999999876 999999999999999998742 267999999999876 677899
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
|+|+++.++++. ...+...+++++.++|+|||.+++.....
T Consensus 105 D~v~~~~~~~~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 145 (227)
T 1ve3_A 105 DYVIFIDSIVHF-----EPLELNQVFKEVRRVLKPSGKFIMYFTDL 145 (227)
T ss_dssp EEEEEESCGGGC-----CHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred EEEEEcCchHhC-----CHHHHHHHHHHHHHHcCCCcEEEEEecCh
Confidence 999999884443 33788899999999999999999987543
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.9e-17 Score=130.91 Aligned_cols=101 Identities=19% Similarity=0.266 Sum_probs=89.3
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++.+..+++|+|+|+.+++.|++++. +. .+++++++|+.+++ +++++||+|++..++++
T Consensus 48 ~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~ 126 (257)
T 3f4k_A 48 AKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP-FQNEELDLIWSEGAIYN 126 (257)
T ss_dssp CEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCS-SCTTCEEEEEEESCSCC
T ss_pred CeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCC-CCCCCEEEEEecChHhh
Confidence 3999999999999999999875699999999999999999874 22 35999999998887 77899999999999988
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+ +...+++++.++|+|||++++.+.
T Consensus 127 ~--------~~~~~l~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 127 I--------GFERGMNEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp C--------CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred c--------CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 7 257899999999999999999873
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-17 Score=132.18 Aligned_cols=99 Identities=19% Similarity=0.327 Sum_probs=89.9
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-CCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||+|||+|.++..+++.+. +++|+|+|+.+++.+++++. ..+++.+.++|+.+++ +++++||+|++..+++++
T Consensus 41 ~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~- 117 (263)
T 2yqz_A 41 PVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIP-LPDESVHGVIVVHLWHLV- 117 (263)
T ss_dssp CEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCC-SCTTCEEEEEEESCGGGC-
T ss_pred CEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCC-CCCCCeeEEEECCchhhc-
Confidence 4999999999999999998864 99999999999999999973 2368999999998887 778899999999999998
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
.+...+++++.++|+|||.+++.
T Consensus 118 ------~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 118 ------PDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp ------TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred ------CCHHHHHHHHHHHCCCCcEEEEE
Confidence 67889999999999999999887
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.7e-17 Score=133.27 Aligned_cols=102 Identities=19% Similarity=0.261 Sum_probs=90.6
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC-CCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||+|||+|.++..+++.+. +++|+|+|+.+++.|++++... .++++.++|+.+.+ + .++||+|++..+++++
T Consensus 122 ~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~-~~~fD~i~~~~~~~~~- 197 (286)
T 3m70_A 122 CKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENLNISTALYDINAAN-I-QENYDFIVSTVVFMFL- 197 (286)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCC-C-CSCEEEEEECSSGGGS-
T ss_pred CcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCCceEEEEecccccc-c-cCCccEEEEccchhhC-
Confidence 4999999999999999999976 9999999999999999987422 28899999999887 4 7889999999999988
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+......+++++.++|+|||++++...
T Consensus 198 ----~~~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 198 ----NRERVPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp ----CGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ----CHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 667788999999999999999877653
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-17 Score=131.09 Aligned_cols=135 Identities=17% Similarity=0.265 Sum_probs=104.5
Q ss_pred hhhhHHHhccCCCCceeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC
Q 026558 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN 92 (237)
Q Consensus 13 ~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~ 92 (237)
..+|+..+...... |......+..++.....++. +|||+|||+|.++..+++.+. +++|+|+|+.+++.|+++.
T Consensus 9 a~~yd~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~-- 82 (239)
T 3bxo_A 9 ADVYDLFYLGRGKD--YAAEASDIADLVRSRTPEAS-SLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRL-- 82 (239)
T ss_dssp HHHHHHHHHHHTCC--HHHHHHHHHHHHHHHCTTCC-EEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHC--
T ss_pred HHHHHHHhhccHhh--HHHHHHHHHHHHHHhcCCCC-eEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhC--
Confidence 34677666532222 21122234556666554444 999999999999999999876 9999999999999999987
Q ss_pred CCCcEEEEccccccccccCCCccEEEe-ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 93 RPQLKYIKMDVRQMDEFQTGSFDSVVD-KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 93 ~~~~~~~~~d~~~~~~~~~~~fD~I~~-~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+++.+.++|+.+++ + .++||+|++ ..+++|+ .+..+...+++++.++|+|||.+++.++..
T Consensus 83 -~~~~~~~~d~~~~~-~-~~~~D~v~~~~~~~~~~----~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 83 -PDATLHQGDMRDFR-L-GRKFSAVVSMFSSVGYL----KTTEELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp -TTCEEEECCTTTCC-C-SSCEEEEEECTTGGGGC----CSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred -CCCEEEECCHHHcc-c-CCCCcEEEEcCchHhhc----CCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 56899999999887 4 678999995 4488887 455788999999999999999999876544
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-16 Score=123.29 Aligned_cols=106 Identities=11% Similarity=0.075 Sum_probs=89.6
Q ss_pred CCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccc-ccCCCccEEEeccccc
Q 026558 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDE-FQTGSFDSVVDKGTLD 124 (237)
Q Consensus 48 ~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~-~~~~~fD~I~~~~~l~ 124 (237)
+.+|||+|||+|.++..+++.+..+++++|+|+.+++.|++++. +..+++++++|+.++.. ++.++||+|+++.+++
T Consensus 45 ~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~ 124 (189)
T 3p9n_A 45 GLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPYN 124 (189)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCTT
T ss_pred CCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCCC
Confidence 34999999999999998888876689999999999999999974 23579999999988642 3468999999998876
Q ss_pred eeccCCCChHHHHHHHHHHHH--hcCCCcEEEEEEcC
Q 026558 125 SLLCGSNSRQNATQMLKEVWR--VLKDKGVYILVTYG 159 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~--~L~pgG~l~~~~~~ 159 (237)
+. ..+...+++.+.+ +|+|||++++.+..
T Consensus 125 ~~------~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 125 VD------SADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp SC------HHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred cc------hhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 53 2678889999999 99999999998743
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.8e-17 Score=127.94 Aligned_cols=106 Identities=23% Similarity=0.344 Sum_probs=90.1
Q ss_pred CcEEEEccCCchhHH-HHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGNSAFSE-GMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~-~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+|||+|||+|..+. .+++.+. +++|+|+|+.+++.|+++... ..++.+.++|+.+++ +++++||+|++..+++|+
T Consensus 25 ~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~ 102 (209)
T 2p8j_A 25 KTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLP-FKDESMSFVYSYGTIFHM 102 (209)
T ss_dssp SEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCC-SCTTCEEEEEECSCGGGS
T ss_pred CEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCC-CCCCceeEEEEcChHHhC
Confidence 399999999999854 4455554 999999999999999988642 257899999999887 778899999999999988
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
+..+...+++++.++|+|||++++.++..+
T Consensus 103 -----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 132 (209)
T 2p8j_A 103 -----RKNDVKEAIDEIKRVLKPGGLACINFLTTK 132 (209)
T ss_dssp -----CHHHHHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred -----CHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 567899999999999999999999886543
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-16 Score=125.97 Aligned_cols=104 Identities=22% Similarity=0.309 Sum_probs=89.6
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccE
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDS 116 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~ 116 (237)
..++....+ +. +|||+|||+|.++..+++. +|+|+|+.+++.++++ ++.+.++|+.+++ ++.++||+
T Consensus 39 ~~~l~~~~~-~~-~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~-----~~~~~~~d~~~~~-~~~~~fD~ 105 (219)
T 1vlm_A 39 LQAVKCLLP-EG-RGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR-----GVFVLKGTAENLP-LKDESFDF 105 (219)
T ss_dssp HHHHHHHCC-SS-CEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT-----TCEEEECBTTBCC-SCTTCEEE
T ss_pred HHHHHHhCC-CC-cEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc-----CCEEEEcccccCC-CCCCCeeE
Confidence 445555555 44 9999999999999988754 9999999999999987 6889999998877 77789999
Q ss_pred EEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 117 I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
|++..+++++ .+...+++++.++|+|||.+++.+...
T Consensus 106 v~~~~~l~~~-------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 142 (219)
T 1vlm_A 106 ALMVTTICFV-------DDPERALKEAYRILKKGGYLIVGIVDR 142 (219)
T ss_dssp EEEESCGGGS-------SCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred EEEcchHhhc-------cCHHHHHHHHHHHcCCCcEEEEEEeCC
Confidence 9999999998 677899999999999999999987544
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-17 Score=137.07 Aligned_cols=138 Identities=16% Similarity=0.245 Sum_probs=101.3
Q ss_pred hhHHHhccCCCCceeecCCcChHHHHHhhCC-CCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--
Q 026558 15 YWDNRYAHESGPFDWYQKYPSLAPLIKLYVP-SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-- 91 (237)
Q Consensus 15 ~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-- 91 (237)
+|+..+..... ....+...+...+. .+..+|||+|||+|.++..+++.+. +++|+|+|+.+++.|+++..
T Consensus 30 ~~~~~~~~~~~------~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~ 102 (293)
T 3thr_A 30 VWQLYIGDTRS------RTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNR 102 (293)
T ss_dssp HHHHHHTCCSC------BCHHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcc------hHHHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhc
Confidence 56665543322 23334444444432 2224999999999999999999976 99999999999999998751
Q ss_pred ----CCCCcEEEEcccccccc--ccCCCccEEEec-cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 92 ----NRPQLKYIKMDVRQMDE--FQTGSFDSVVDK-GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 92 ----~~~~~~~~~~d~~~~~~--~~~~~fD~I~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
...++.+..+|+.+++. ++.++||+|++. .+++|+.....+.+....+++++.++|+|||++++....
T Consensus 103 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 103 RKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp TTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ccccccceeeEeecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 11367889999887642 357899999998 799998211111356899999999999999999987754
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-16 Score=128.18 Aligned_cols=111 Identities=14% Similarity=0.231 Sum_probs=86.3
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc----ccCC
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE----FQTG 112 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~----~~~~ 112 (237)
..++......+..+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++.... ++..++.+.+. ...+
T Consensus 35 ~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~----~v~~~~~~~~~~~~~~~~~ 109 (261)
T 3iv6_A 35 ENDIFLENIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR----CVTIDLLDITAEIPKELAG 109 (261)
T ss_dssp HHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS----CCEEEECCTTSCCCGGGTT
T ss_pred HHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc----cceeeeeecccccccccCC
Confidence 4444443333334999999999999999999976 9999999999999999998542 23333433321 2257
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+||+|+++.+++|+ ..++...+++++.++| |||++++...
T Consensus 110 ~fD~Vv~~~~l~~~-----~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 110 HFDFVLNDRLINRF-----TTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp CCSEEEEESCGGGS-----CHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred CccEEEEhhhhHhC-----CHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 89999999999987 6678888999999999 9999998763
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=8e-17 Score=132.72 Aligned_cols=113 Identities=17% Similarity=0.239 Sum_probs=94.6
Q ss_pred hCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccccc-cCCCccEEE
Q 026558 43 YVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEF-QTGSFDSVV 118 (237)
Q Consensus 43 ~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~-~~~~fD~I~ 118 (237)
.+.++. +|||+|||+|.++..+++.+..+++|+|+|+.+++.|+++.... .++.++++|+.+.+ + +.++||+|+
T Consensus 61 ~~~~~~-~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~fD~v~ 138 (298)
T 1ri5_A 61 YTKRGD-SVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH-MDLGKEFDVIS 138 (298)
T ss_dssp HCCTTC-EEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSC-CCCSSCEEEEE
T ss_pred hCCCCC-eEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccc-cCCCCCcCEEE
Confidence 344454 99999999999999998887569999999999999999997532 36899999999886 5 578999999
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+..++++.+ .+..+...+++++.++|+|||++++.+...
T Consensus 139 ~~~~l~~~~---~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 177 (298)
T 1ri5_A 139 SQFSFHYAF---STSESLDIAQRNIARHLRPGGYFIMTVPSR 177 (298)
T ss_dssp EESCGGGGG---SSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred ECchhhhhc---CCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 999987721 144788999999999999999999987543
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-17 Score=132.05 Aligned_cols=116 Identities=15% Similarity=0.156 Sum_probs=88.4
Q ss_pred HHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccc-cccCCCccEE
Q 026558 40 IKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMD-EFQTGSFDSV 117 (237)
Q Consensus 40 l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~-~~~~~~fD~I 117 (237)
+...+...+++|||||||+|..+..+++....++++||+|+.+++.|+++... ..++.++.+|+.+.. .+++++||.|
T Consensus 53 ~a~~~~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i 132 (236)
T 3orh_A 53 LAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGI 132 (236)
T ss_dssp HHHHHTTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred HHHhhccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceE
Confidence 33333333349999999999999999988756999999999999999999854 347888999987643 3678899999
Q ss_pred EeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+.+.+.... ......+...+++++.|+|||||+|++..
T Consensus 133 ~~D~~~~~~--~~~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 133 LYDTYPLSE--ETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp EECCCCCBG--GGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred EEeeeeccc--chhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 865332111 00122788999999999999999998754
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.70 E-value=8.1e-17 Score=128.92 Aligned_cols=104 Identities=17% Similarity=0.297 Sum_probs=91.1
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC-CCcEEEEccccccccccCCCccEEEecc-cccee
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKG-TLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~-~l~~~ 126 (237)
.+|||+|||+|.++..+++.+. +++|+|+|+.+++.|+++.... .++.+.++|+.+++ ++ ++||+|++.. +++|+
T Consensus 39 ~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~-~~fD~v~~~~~~l~~~ 115 (246)
T 1y8c_A 39 DDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN-IN-RKFDLITCCLDSTNYI 115 (246)
T ss_dssp TEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC-CS-CCEEEEEECTTGGGGC
T ss_pred CeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCC-cc-CCceEEEEcCcccccc
Confidence 4999999999999999999875 9999999999999999987432 27899999999887 54 8899999998 99988
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
.+..+...+++++.++|+|||.+++....
T Consensus 116 ----~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (246)
T 1y8c_A 116 ----IDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp ----CSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred ----CCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 45578899999999999999999986644
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.2e-16 Score=121.08 Aligned_cols=120 Identities=20% Similarity=0.228 Sum_probs=92.3
Q ss_pred HHHhhCCCCCCcEEEEccCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCC
Q 026558 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 39 ~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~--~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~ 113 (237)
++...+.++. +|||+|||+|.++..+++. ...+++|+|+|+.+++.|++++.. ..+++++++|+.+++.+..++
T Consensus 15 ~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 93 (197)
T 3eey_A 15 YIKMFVKEGD-TVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCP 93 (197)
T ss_dssp HHHHHCCTTC-EEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSC
T ss_pred HHHhcCCCCC-EEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCC
Confidence 3444445554 9999999999999999887 234999999999999999999743 257999999998876455689
Q ss_pred ccEEEeccccceec--cCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 114 FDSVVDKGTLDSLL--CGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 114 fD~I~~~~~l~~~~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
||+|+++.++.... .-.....+...+++++.++|+|||++++..+.
T Consensus 94 fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 94 VKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp EEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 99999986551100 00023456678999999999999999998754
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-16 Score=132.41 Aligned_cols=117 Identities=14% Similarity=0.223 Sum_probs=93.8
Q ss_pred HHHhhCCCCCCcEEEEccCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCC--C-CCcEEEEccccccccccCCCc
Q 026558 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSN--R-PQLKYIKMDVRQMDEFQTGSF 114 (237)
Q Consensus 39 ~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~--~-~~~~~~~~d~~~~~~~~~~~f 114 (237)
++......+..+|||+|||+|.++..+++. + .+++|+|+|+.+++.|+++... . .++++..+|+.++ +++|
T Consensus 64 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~f 138 (302)
T 3hem_A 64 ALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF----DEPV 138 (302)
T ss_dssp HHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC----CCCC
T ss_pred HHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc----CCCc
Confidence 344332333349999999999999999988 6 5999999999999999999742 2 3789999999766 5889
Q ss_pred cEEEeccccceeccCCC---ChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 115 DSVVDKGTLDSLLCGSN---SRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~---~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
|+|++..+++|+. ++. +.+....+++++.++|+|||++++.+...+
T Consensus 139 D~v~~~~~~~~~~-d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 187 (302)
T 3hem_A 139 DRIVSLGAFEHFA-DGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 187 (302)
T ss_dssp SEEEEESCGGGTT-CCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred cEEEEcchHHhcC-ccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence 9999999999882 110 336678999999999999999999886543
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=3.2e-17 Score=135.09 Aligned_cols=106 Identities=16% Similarity=0.239 Sum_probs=80.8
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCC--------------------------------Cc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRP--------------------------------QL 96 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~--------------------------------~~ 96 (237)
.+|||||||+|.....++.....+|+|+|+|+.+++.|++++...+ .+
T Consensus 73 ~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 152 (289)
T 2g72_A 73 RTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVK 152 (289)
T ss_dssp SEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEE
T ss_pred CeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhhhc
Confidence 4999999999996554544333499999999999999998764211 13
Q ss_pred EEEEccccc-cc----cccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 97 KYIKMDVRQ-MD----EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 97 ~~~~~d~~~-~~----~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.++.+|+.+ ++ .+++++||+|++..+++++. .+..+...+++++.++|||||++++..
T Consensus 153 ~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~---~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 153 RVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVS---PDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp EEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHC---SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred eEEecccCCCCCccccccCCCCCCEEEehhhhhhhc---CCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 567778877 43 13456799999999999840 012688999999999999999999874
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.70 E-value=6.2e-17 Score=131.34 Aligned_cols=114 Identities=24% Similarity=0.406 Sum_probs=94.2
Q ss_pred cChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCC
Q 026558 34 PSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 34 ~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~ 113 (237)
..+.+++...++++ .+|||+|||+|.++..+++.+. +++|+|+|+.+++.|+++... .+.++|+.+++ +++++
T Consensus 42 ~~~~~~l~~~~~~~-~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~----~~~~~d~~~~~-~~~~~ 114 (260)
T 2avn_A 42 RLIGSFLEEYLKNP-CRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVK----NVVEAKAEDLP-FPSGA 114 (260)
T ss_dssp HHHHHHHHHHCCSC-CEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCS----CEEECCTTSCC-SCTTC
T ss_pred HHHHHHHHHhcCCC-CeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcCC----CEEECcHHHCC-CCCCC
Confidence 34566677666644 4999999999999999998875 999999999999999999752 28899998887 77889
Q ss_pred ccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 114 fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
||+|++..++.++. .+...+++++.++|+|||++++.+...
T Consensus 115 fD~v~~~~~~~~~~------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 115 FEAVLALGDVLSYV------ENKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp EEEEEECSSHHHHC------SCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred EEEEEEcchhhhcc------ccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 99999987665541 347899999999999999999887543
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-16 Score=130.09 Aligned_cols=103 Identities=21% Similarity=0.288 Sum_probs=88.4
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++....+++|+|+|+.+++.+++++.. .+++.+..+|+.+++ ++||+|++..+++|
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~fD~v~~~~~l~~ 141 (287)
T 1kpg_A 66 MTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD----EPVDRIVSIGAFEH 141 (287)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC----CCCSEEEEESCGGG
T ss_pred CEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC----CCeeEEEEeCchhh
Confidence 49999999999999999854334999999999999999998742 247899999997654 78999999999999
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+ +..+...+++++.++|+|||++++.+...
T Consensus 142 ~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 171 (287)
T 1kpg_A 142 F-----GHERYDAFFSLAHRLLPADGVMLLHTITG 171 (287)
T ss_dssp T-----CTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred c-----ChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 8 55678999999999999999999987543
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-16 Score=126.23 Aligned_cols=116 Identities=20% Similarity=0.325 Sum_probs=97.0
Q ss_pred ChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-CCCCcEEEEccccccccccCCC
Q 026558 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 35 ~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~~~~~ 113 (237)
.+.+.+...+.++. +|||+|||+|.++..+++. .+++|+|+|+.+++.|+++.. ...++++.++|+.+++ ++ ++
T Consensus 22 ~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~-~~ 96 (243)
T 3d2l_A 22 EWVAWVLEQVEPGK-RIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELE-LP-EP 96 (243)
T ss_dssp HHHHHHHHHSCTTC-EEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCC-CS-SC
T ss_pred HHHHHHHHHcCCCC-eEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcC-CC-CC
Confidence 34556666666665 9999999999999999988 499999999999999999874 2257899999998886 44 78
Q ss_pred ccEEEecc-ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 114 FDSVVDKG-TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 114 fD~I~~~~-~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
||+|++.. +++|+ .+..+...+++++.++|+|||++++....
T Consensus 97 fD~v~~~~~~~~~~----~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 139 (243)
T 3d2l_A 97 VDAITILCDSLNYL----QTEADVKQTFDSAARLLTDGGKLLFDVHS 139 (243)
T ss_dssp EEEEEECTTGGGGC----CSHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCEEEEeCCchhhc----CCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 99999986 88887 45678889999999999999999886643
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.6e-17 Score=133.98 Aligned_cols=108 Identities=17% Similarity=0.259 Sum_probs=87.0
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCC----------------------------------
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR---------------------------------- 93 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~---------------------------------- 93 (237)
.+|||||||+|.++..+++.. ..+++|+|+|+.+++.|++++...
T Consensus 48 ~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 127 (292)
T 3g07_A 48 RDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFP 127 (292)
T ss_dssp SEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-------------------------------------
T ss_pred CcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccccc
Confidence 399999999999999999883 459999999999999999986421
Q ss_pred --------------------------CCcEEEEccccccc----cccCCCccEEEeccccceeccCCCChHHHHHHHHHH
Q 026558 94 --------------------------PQLKYIKMDVRQMD----EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEV 143 (237)
Q Consensus 94 --------------------------~~~~~~~~d~~~~~----~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~ 143 (237)
.++.|.++|+.... .+..++||+|++..+++|+.. ..+.+....+++++
T Consensus 128 ~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl-~~~~~~~~~~l~~~ 206 (292)
T 3g07_A 128 ASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHL-NWGDEGLKRMFRRI 206 (292)
T ss_dssp --------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHH-HHHHHHHHHHHHHH
T ss_pred chhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhh-cCCHHHHHHHHHHH
Confidence 37899999997543 245789999999999877600 00234888999999
Q ss_pred HHhcCCCcEEEEEE
Q 026558 144 WRVLKDKGVYILVT 157 (237)
Q Consensus 144 ~~~L~pgG~l~~~~ 157 (237)
+++|+|||++++..
T Consensus 207 ~~~LkpGG~lil~~ 220 (292)
T 3g07_A 207 YRHLRPGGILVLEP 220 (292)
T ss_dssp HHHEEEEEEEEEEC
T ss_pred HHHhCCCcEEEEec
Confidence 99999999998865
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.1e-17 Score=134.80 Aligned_cols=108 Identities=15% Similarity=0.225 Sum_probs=83.9
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCC--------CcEEEEccc------cccc-cccCCC
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRP--------QLKYIKMDV------RQMD-EFQTGS 113 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~--------~~~~~~~d~------~~~~-~~~~~~ 113 (237)
.+|||||||+|..+..++..+..+++|+|+|+.|++.|+++..... +++|.+.|+ .+++ .++.++
T Consensus 50 ~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~~ 129 (302)
T 2vdw_A 50 RKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGK 129 (302)
T ss_dssp CEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCSSC
T ss_pred CeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccCCC
Confidence 4999999999987776666655599999999999999999874211 256778877 3222 145689
Q ss_pred ccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 114 fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
||+|+|..++|+++ +.++...+++++.++|+|||++++.+...
T Consensus 130 FD~V~~~~~lhy~~----~~~~~~~~l~~~~r~LkpGG~~i~~~~~~ 172 (302)
T 2vdw_A 130 FNIIDWQFAIHYSF----HPRHYATVMNNLSELTASGGKVLITTMDG 172 (302)
T ss_dssp EEEEEEESCGGGTC----STTTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred eeEEEECchHHHhC----CHHHHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 99999999988752 22345799999999999999999888643
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.1e-17 Score=130.00 Aligned_cols=109 Identities=16% Similarity=0.171 Sum_probs=87.2
Q ss_pred CCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEcccccc--ccccCCCccEEEe-ccc
Q 026558 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQM--DEFQTGSFDSVVD-KGT 122 (237)
Q Consensus 47 ~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~--~~~~~~~fD~I~~-~~~ 122 (237)
...+|||+|||+|.++..+++.+..+++|+|+|+.+++.|+++... ..++.++++|+.++ + +++++||+|++ ...
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~fD~V~~d~~~ 138 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPT-LPDGHFDGILYDTYP 138 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGG-SCTTCEEEEEECCCC
T ss_pred CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcc-cCCCceEEEEECCcc
Confidence 3349999999999999999887655899999999999999998853 25789999999887 5 77889999999 444
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+ +.. . ........+++++.++|||||++++..+.
T Consensus 139 ~-~~~-~-~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 139 L-SEE-T-WHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp C-BGG-G-TTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred c-chh-h-hhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 3 210 0 12356678899999999999999887643
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-16 Score=133.49 Aligned_cols=101 Identities=15% Similarity=0.167 Sum_probs=89.5
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--C-CCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--R-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++....+++|+|+|+.+++.|+++... . .+++++++|+.+++ +++++||+|++..++++
T Consensus 119 ~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~~l~~ 197 (312)
T 3vc1_A 119 DTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP-FDKGAVTASWNNESTMY 197 (312)
T ss_dssp CEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-CCTTCEEEEEEESCGGG
T ss_pred CEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC-CCCCCEeEEEECCchhh
Confidence 49999999999999999988324999999999999999998742 2 37999999999887 77899999999999998
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+ . ...+++++.++|+|||++++.+.
T Consensus 198 ~-------~-~~~~l~~~~~~LkpgG~l~~~~~ 222 (312)
T 3vc1_A 198 V-------D-LHDLFSEHSRFLKVGGRYVTITG 222 (312)
T ss_dssp S-------C-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred C-------C-HHHHHHHHHHHcCCCcEEEEEEc
Confidence 7 3 88999999999999999998774
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-16 Score=130.63 Aligned_cols=102 Identities=13% Similarity=0.200 Sum_probs=90.3
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCC-CCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++.. ..+++|+|+|+.+++.|+++.... .++++.++|+.+++ + .++||+|++..++++
T Consensus 24 ~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~-~-~~~fD~v~~~~~l~~ 101 (284)
T 3gu3_A 24 VHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE-L-NDKYDIAICHAFLLH 101 (284)
T ss_dssp CEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCC-C-SSCEEEEEEESCGGG
T ss_pred CeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcC-c-CCCeeEEEECChhhc
Confidence 499999999999999999873 249999999999999999997533 38999999999887 5 568999999999999
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+ .+...+++++.++|+|||.+++....
T Consensus 102 ~-------~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 102 M-------TTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp C-------SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred C-------CCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 8 67789999999999999999988754
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-16 Score=131.31 Aligned_cols=116 Identities=13% Similarity=0.185 Sum_probs=94.7
Q ss_pred HHHHhhCCCCCCcEEEEccCCchhHHHHH--HcCCCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccccccCC
Q 026558 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMV--DDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTG 112 (237)
Q Consensus 38 ~~l~~~~~~~~~~iLdlG~G~G~~~~~~~--~~~~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~ 112 (237)
..+...+.++. +|||+|||+|.++..++ .....+++|+|+|+.+++.|++++... .+++++++|+.+++ ++ +
T Consensus 110 ~~l~~~l~~~~-~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~-~ 186 (305)
T 3ocj_A 110 RALQRHLRPGC-VVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLD-TR-E 186 (305)
T ss_dssp HHHHHHCCTTC-EEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCC-CC-S
T ss_pred HHHHhhCCCCC-EEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCC-cc-C
Confidence 33434445554 99999999999999985 233459999999999999999998642 24899999999987 65 8
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+||+|+++.+++++ .++.....+++++.++|+|||++++.++..
T Consensus 187 ~fD~v~~~~~~~~~----~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 230 (305)
T 3ocj_A 187 GYDLLTSNGLNIYE----PDDARVTELYRRFWQALKPGGALVTSFLTP 230 (305)
T ss_dssp CEEEEECCSSGGGC----CCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred CeEEEEECChhhhc----CCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 99999999999988 455566679999999999999999987554
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.1e-16 Score=129.49 Aligned_cols=102 Identities=12% Similarity=0.227 Sum_probs=89.5
Q ss_pred CcEEEEccCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++. +. +++|+|+|+.+++.|+++.... .++.+..+|+.+++ ++||+|++..+++
T Consensus 92 ~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~fD~v~~~~~l~ 166 (318)
T 2fk8_A 92 MTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA----EPVDRIVSIEAFE 166 (318)
T ss_dssp CEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC----CCCSEEEEESCGG
T ss_pred CEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC----CCcCEEEEeChHH
Confidence 49999999999999999987 54 9999999999999999987432 36899999997764 7899999999999
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
++ +..+...+++++.++|+|||++++.+...
T Consensus 167 ~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 197 (318)
T 2fk8_A 167 HF-----GHENYDDFFKRCFNIMPADGRMTVQSSVS 197 (318)
T ss_dssp GT-----CGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred hc-----CHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 98 55788999999999999999999987644
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.67 E-value=7.4e-16 Score=124.13 Aligned_cols=113 Identities=21% Similarity=0.386 Sum_probs=90.4
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccccCCCcc
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
..++......+..+|||+|||+|.++..+++.+. +++|+|+|+.+++.|+++... ..++.++++|+.+++ + .++||
T Consensus 31 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~-~-~~~fD 107 (252)
T 1wzn_A 31 EEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA-F-KNEFD 107 (252)
T ss_dssp HHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC-C-CSCEE
T ss_pred HHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcc-c-CCCcc
Confidence 3444443333334999999999999999999875 999999999999999998742 247899999999876 4 46899
Q ss_pred EEEecc-ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 116 SVVDKG-TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 116 ~I~~~~-~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+|++.. .+++. +..+...+++++.++|+|||.+++..
T Consensus 108 ~v~~~~~~~~~~-----~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 108 AVTMFFSTIMYF-----DEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp EEEECSSGGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEcCCchhcC-----CHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 999864 44444 45788999999999999999998754
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-16 Score=125.38 Aligned_cols=109 Identities=17% Similarity=0.256 Sum_probs=89.7
Q ss_pred HHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccc---ccccCCCcc
Q 026558 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM---DEFQTGSFD 115 (237)
Q Consensus 39 ~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~---~~~~~~~fD 115 (237)
++.......+.+|||+|||+|.++..+++.+. +++|+|+|+.+++.|+++ .++.+...|+.++ +.....+||
T Consensus 44 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~fD 118 (227)
T 3e8s_A 44 ILLAILGRQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA----GAGEVHLASYAQLAEAKVPVGKDYD 118 (227)
T ss_dssp HHHHHHHTCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT----CSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred HHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh----cccccchhhHHhhcccccccCCCcc
Confidence 34433333335999999999999999999865 999999999999999998 5678899998776 323345699
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+|++..+++ . .+...+++++.++|+|||++++.+...
T Consensus 119 ~v~~~~~l~-~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~ 155 (227)
T 3e8s_A 119 LICANFALL-H-------QDIIELLSAMRTLLVPGGALVIQTLHP 155 (227)
T ss_dssp EEEEESCCC-S-------SCCHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EEEECchhh-h-------hhHHHHHHHHHHHhCCCeEEEEEecCc
Confidence 999999988 5 667899999999999999999988654
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-15 Score=117.68 Aligned_cols=101 Identities=13% Similarity=0.078 Sum_probs=84.9
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++.+ ..+++++|+|+.+++.|+++.. +..+++++.+|+.+.. ...+.||+|++..+++
T Consensus 42 ~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~i~~~~~~~- 119 (204)
T 3e05_A 42 LVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGL-DDLPDPDRVFIGGSGG- 119 (204)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTC-TTSCCCSEEEESCCTT-
T ss_pred CEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhh-hcCCCCCEEEECCCCc-
Confidence 499999999999999999986 3599999999999999999874 3357999999997654 2337799999987654
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+...+++++.++|+|||++++.....
T Consensus 120 ---------~~~~~l~~~~~~LkpgG~l~~~~~~~ 145 (204)
T 3e05_A 120 ---------MLEEIIDAVDRRLKSEGVIVLNAVTL 145 (204)
T ss_dssp ---------CHHHHHHHHHHHCCTTCEEEEEECBH
T ss_pred ---------CHHHHHHHHHHhcCCCeEEEEEeccc
Confidence 44789999999999999999987543
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-16 Score=134.20 Aligned_cols=102 Identities=22% Similarity=0.295 Sum_probs=89.7
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC----------CCCCcEEEEcccccc------cccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS----------NRPQLKYIKMDVRQM------DEFQ 110 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~----------~~~~~~~~~~d~~~~------~~~~ 110 (237)
.+|||+|||+|.++..+++.. ..+++|+|+|+.+++.|++++. ..++++++++|+.++ + ++
T Consensus 85 ~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~-~~ 163 (383)
T 4fsd_A 85 ATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG-VP 163 (383)
T ss_dssp CEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC-CC
T ss_pred CEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC-CC
Confidence 499999999999999998862 3499999999999999998863 125899999999886 4 77
Q ss_pred CCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 111 ~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+++||+|+++.+++++ .+...+++++.++|+|||++++.+.
T Consensus 164 ~~~fD~V~~~~~l~~~-------~d~~~~l~~~~r~LkpgG~l~i~~~ 204 (383)
T 4fsd_A 164 DSSVDIVISNCVCNLS-------TNKLALFKEIHRVLRDGGELYFSDV 204 (383)
T ss_dssp TTCEEEEEEESCGGGC-------SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCEEEEEEccchhcC-------CCHHHHHHHHHHHcCCCCEEEEEEe
Confidence 8899999999999998 6788999999999999999999764
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.7e-16 Score=120.24 Aligned_cols=99 Identities=17% Similarity=0.211 Sum_probs=83.8
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEccccccccccC-CCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDEFQT-GSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~~~~-~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++.+ .+++++|+|+.+++.+++++. +. .++.+.++|+.+. ++. +.||+|++..+++
T Consensus 35 ~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~~~~~ 111 (192)
T 1l3i_A 35 DVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA--LCKIPDIDIAVVGGSGG 111 (192)
T ss_dssp CEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH--HTTSCCEEEEEESCCTT
T ss_pred CEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHh--cccCCCCCEEEECCchH
Confidence 499999999999999999987 699999999999999999874 22 5789999998773 233 5899999987765
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
++ ..+++++.++|+|||.+++.+...
T Consensus 112 ~~----------~~~l~~~~~~l~~gG~l~~~~~~~ 137 (192)
T 1l3i_A 112 EL----------QEILRIIKDKLKPGGRIIVTAILL 137 (192)
T ss_dssp CH----------HHHHHHHHHTEEEEEEEEEEECBH
T ss_pred HH----------HHHHHHHHHhcCCCcEEEEEecCc
Confidence 44 789999999999999999887544
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.66 E-value=8.6e-16 Score=118.36 Aligned_cols=115 Identities=17% Similarity=0.308 Sum_probs=92.8
Q ss_pred HHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCC--cEEEEccccccccccCCC
Q 026558 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQ--LKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 38 ~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~--~~~~~~d~~~~~~~~~~~ 113 (237)
.++......+..+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++. +..+ +++..+|+.+. ++.++
T Consensus 43 ~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~ 119 (194)
T 1dus_A 43 ILVENVVVDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN--VKDRK 119 (194)
T ss_dssp HHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT--CTTSC
T ss_pred HHHHHcccCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcc--cccCC
Confidence 33443333333499999999999999999884 599999999999999999874 3344 89999999875 35678
Q ss_pred ccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 114 fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
||+|+++.++++ +......+++++.++|+|||.+++.+....
T Consensus 120 ~D~v~~~~~~~~------~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 161 (194)
T 1dus_A 120 YNKIITNPPIRA------GKEVLHRIIEEGKELLKDNGEIWVVIQTKQ 161 (194)
T ss_dssp EEEEEECCCSTT------CHHHHHHHHHHHHHHEEEEEEEEEEEESTH
T ss_pred ceEEEECCCccc------chhHHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 999999988765 236788999999999999999999886653
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=121.27 Aligned_cols=137 Identities=22% Similarity=0.164 Sum_probs=98.6
Q ss_pred CCChhhhHHHhc--cCCCCceee--cCCcChH-HHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHH
Q 026558 10 YGEPWYWDNRYA--HESGPFDWY--QKYPSLA-PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIE 84 (237)
Q Consensus 10 ~~~~~~w~~~y~--~~~~~~~~~--~~~~~~~-~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~ 84 (237)
|-+..+|+..|. .....+... ...+.+. .++......+..+|||+|||+|.++..+++.+ .+++++|+++.+++
T Consensus 28 f~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~ 106 (231)
T 1vbf_A 28 FLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYN 106 (231)
T ss_dssp HSCGGGGGGSSSSTTCCEEEETTEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHH
T ss_pred cCCcchhhhccccCCCceeeCCCCccCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHH
Confidence 345566776666 332221110 0122233 33333322333499999999999999999987 59999999999999
Q ss_pred HHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 85 AMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 85 ~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
.++++.....++.+..+|+.+.. ...++||+|++..+++++ . +++.++|+|||++++......
T Consensus 107 ~a~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~~~~~-------~------~~~~~~L~pgG~l~~~~~~~~ 169 (231)
T 1vbf_A 107 YASKLLSYYNNIKLILGDGTLGY-EEEKPYDRVVVWATAPTL-------L------CKPYEQLKEGGIMILPIGVGR 169 (231)
T ss_dssp HHHHHHTTCSSEEEEESCGGGCC-GGGCCEEEEEESSBBSSC-------C------HHHHHTEEEEEEEEEEECSSS
T ss_pred HHHHHHhhcCCeEEEECCccccc-ccCCCccEEEECCcHHHH-------H------HHHHHHcCCCcEEEEEEcCCC
Confidence 99999865448999999998743 246789999999999887 2 368899999999999875543
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.3e-16 Score=121.31 Aligned_cols=110 Identities=16% Similarity=0.138 Sum_probs=89.5
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCc
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSF 114 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~f 114 (237)
...+.....++. +|||+|||+|.++..+++.+..+++++|+|+.+++.|++++. +..++++.++|+.+.. .++|
T Consensus 51 ~~~l~~~~~~~~-~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~f 126 (205)
T 3grz_A 51 MLGIERAMVKPL-TVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV---DGKF 126 (205)
T ss_dssp HHHHHHHCSSCC-EEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC---CSCE
T ss_pred HHHHHHhccCCC-EEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC---CCCc
Confidence 344444445554 999999999999999998876699999999999999999874 3335999999997754 5889
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
|+|+++.++++ ...+++++.++|+|||++++.+...
T Consensus 127 D~i~~~~~~~~----------~~~~l~~~~~~L~~gG~l~~~~~~~ 162 (205)
T 3grz_A 127 DLIVANILAEI----------LLDLIPQLDSHLNEDGQVIFSGIDY 162 (205)
T ss_dssp EEEEEESCHHH----------HHHHGGGSGGGEEEEEEEEEEEEEG
T ss_pred eEEEECCcHHH----------HHHHHHHHHHhcCCCCEEEEEecCc
Confidence 99999876644 4788999999999999999976443
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-15 Score=118.35 Aligned_cols=111 Identities=21% Similarity=0.277 Sum_probs=85.8
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccc-ccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDE-FQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~-~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++.. ..+++|+|+|+.+++.|++++. +..++.++++|+.+++. ++.++||+|+++.+..
T Consensus 43 ~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~~~ 122 (214)
T 1yzh_A 43 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDP 122 (214)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCCC
T ss_pred CeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECCCC
Confidence 499999999999999999875 3499999999999999999874 33589999999988653 4577899999986543
Q ss_pred eeccCC-CChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 125 SLLCGS-NSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 125 ~~~~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+.-..+ ........+++++.++|+|||.+++.+..
T Consensus 123 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (214)
T 1yzh_A 123 WPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN 158 (214)
T ss_dssp CCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred ccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC
Confidence 220000 00002367999999999999999998743
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.7e-16 Score=123.59 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=82.0
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--------CCCCcEEEEccccc-ccc-ccCCCccEE
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--------NRPQLKYIKMDVRQ-MDE-FQTGSFDSV 117 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--------~~~~~~~~~~d~~~-~~~-~~~~~fD~I 117 (237)
.+|||||||+|.++..+++.. ...++|+|+|+.+++.|++++. +..+++++++|+.+ ++. ++.++||.|
T Consensus 48 ~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~v 127 (235)
T 3ckk_A 48 VEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKM 127 (235)
T ss_dssp EEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEEE
T ss_pred CeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeEE
Confidence 389999999999999999875 3489999999999999987642 34689999999987 432 567899999
Q ss_pred EeccccceeccCCC-ChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 118 VDKGTLDSLLCGSN-SRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 118 ~~~~~l~~~~~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
++..+-.+.-.... .......+++++.++|+|||.+++.+...
T Consensus 128 ~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~ 171 (235)
T 3ckk_A 128 FFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVL 171 (235)
T ss_dssp EEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred EEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCH
Confidence 87543222100000 00011479999999999999999987543
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-15 Score=123.33 Aligned_cols=107 Identities=18% Similarity=0.173 Sum_probs=89.0
Q ss_pred CcEEEEccCC---chhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc----------cccCCCc
Q 026558 49 QRILIVGCGN---SAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----------EFQTGSF 114 (237)
Q Consensus 49 ~~iLdlG~G~---G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~----------~~~~~~f 114 (237)
.+|||||||+ |.++..+.+.. ..+++++|+|+.|++.|++++...++++++++|+.+.. .++..+|
T Consensus 79 ~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~~~ 158 (274)
T 2qe6_A 79 SQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFSRP 158 (274)
T ss_dssp CEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTTSC
T ss_pred CEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCCCC
Confidence 4999999999 98877666653 34999999999999999999865568999999997642 1333589
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
|+|++..++|++ +.+....+++++.++|+|||+|++.....
T Consensus 159 d~v~~~~vlh~~-----~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 159 AAIMLVGMLHYL-----SPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp CEEEETTTGGGS-----CTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred EEEEEechhhhC-----CcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 999999999998 33358899999999999999999988654
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.2e-15 Score=114.74 Aligned_cols=100 Identities=11% Similarity=0.118 Sum_probs=82.4
Q ss_pred CCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCC-CcEEEEccccccccccCCCccEEEecccc
Q 026558 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRP-QLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 47 ~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~-~~~~~~~d~~~~~~~~~~~fD~I~~~~~l 123 (237)
...+|||+|||+|.++..+++.+ .+++++|+|+.+++.|++++. +.+ +++++++|+.+.. .....||+|++...+
T Consensus 55 ~~~~vLDlGcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~~~D~v~~~~~~ 132 (204)
T 3njr_A 55 RGELLWDIGGGSGSVSVEWCLAG-GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAAL-ADLPLPEAVFIGGGG 132 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGG-TTSCCCSEEEECSCC
T ss_pred CCCEEEEecCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhc-ccCCCCCEEEECCcc
Confidence 33499999999999999999984 599999999999999999873 334 7999999998843 234579999987633
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
... +++++.++|+|||++++.+...
T Consensus 133 -----------~~~-~l~~~~~~LkpgG~lv~~~~~~ 157 (204)
T 3njr_A 133 -----------SQA-LYDRLWEWLAPGTRIVANAVTL 157 (204)
T ss_dssp -----------CHH-HHHHHHHHSCTTCEEEEEECSH
T ss_pred -----------cHH-HHHHHHHhcCCCcEEEEEecCc
Confidence 234 8999999999999999987654
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-14 Score=119.39 Aligned_cols=98 Identities=17% Similarity=0.182 Sum_probs=81.2
Q ss_pred CcEEEEccCCchhHH-HHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSE-GMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~-~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++. .+++...++|+|+|+|+.+++.|+++++ +..+++++++|+.+++ +++||+|++...
T Consensus 124 ~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~---d~~FDvV~~~a~--- 197 (298)
T 3fpf_A 124 ERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID---GLEFDVLMVAAL--- 197 (298)
T ss_dssp CEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG---GCCCSEEEECTT---
T ss_pred CEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC---CCCcCEEEECCC---
Confidence 499999999997764 4455334599999999999999999874 3368999999998875 688999998654
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
. .+...+++++.++|+|||++++....
T Consensus 198 ~-------~d~~~~l~el~r~LkPGG~Lvv~~~~ 224 (298)
T 3fpf_A 198 A-------EPKRRVFRNIHRYVDTETRIIYRTYT 224 (298)
T ss_dssp C-------SCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred c-------cCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence 3 56789999999999999999987743
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=126.87 Aligned_cols=109 Identities=20% Similarity=0.242 Sum_probs=90.3
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC---------CCCCcEEEEccccccc---cc--cCCCc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS---------NRPQLKYIKMDVRQMD---EF--QTGSF 114 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~---------~~~~~~~~~~d~~~~~---~~--~~~~f 114 (237)
.+|||+|||+|.++..+++.+..+++|+|+|+.+++.|+++.. ...++.++++|+.+.+ .+ +.++|
T Consensus 36 ~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~f 115 (313)
T 3bgv_A 36 ITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCF 115 (313)
T ss_dssp CEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTCCE
T ss_pred CEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCCCE
Confidence 3999999999999999988765699999999999999998863 2236899999998764 23 24589
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
|+|++..++|+++ .+..+...+++++.++|+|||.+++.+...
T Consensus 116 D~V~~~~~l~~~~---~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 116 DICSCQFVCHYSF---ESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp EEEEEETCGGGGG---GSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred EEEEEecchhhcc---CCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 9999999998752 234677899999999999999999988654
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.2e-15 Score=117.23 Aligned_cols=107 Identities=13% Similarity=0.129 Sum_probs=87.0
Q ss_pred HHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCcc
Q 026558 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 38 ~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
.++......+..+|||+|||+|.++..+++.+ .+++++|+|+.+++.|++++. +..++++..+|+.+.. ...++||
T Consensus 68 ~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D 145 (210)
T 3lbf_A 68 RMTELLELTPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGW-QARAPFD 145 (210)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC-GGGCCEE
T ss_pred HHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCC-ccCCCcc
Confidence 33333333333499999999999999999985 499999999999999999874 3457999999998865 4568999
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+|++..+++++ . +++.++|+|||++++....
T Consensus 146 ~i~~~~~~~~~-------~------~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 146 AIIVTAAPPEI-------P------TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EEEESSBCSSC-------C------THHHHTEEEEEEEEEEECS
T ss_pred EEEEccchhhh-------h------HHHHHhcccCcEEEEEEcC
Confidence 99999999887 1 2588999999999998754
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.5e-16 Score=121.96 Aligned_cols=137 Identities=15% Similarity=0.110 Sum_probs=96.3
Q ss_pred hhhhHHHhccCCCCceeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC
Q 026558 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS 91 (237)
Q Consensus 13 ~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~ 91 (237)
+..|++.+....-.+. .....+..++ ...+. +|||||||+|.++..+++.. ...++|+|+|+.+++.|+++..
T Consensus 6 ~~~~~~~~~~~~~~~~--~~~~d~~~~f---~~~~~-~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~ 79 (218)
T 3dxy_A 6 EHALENYWPVMGVEFS--EDMLDFPALF---GREAP-VTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAH 79 (218)
T ss_dssp -CHHHHHHHHHBCCCC--SSCCCHHHHH---SSCCC-EEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHHhHHhCCCCC--CCCCCHHHHc---CCCCC-eEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHH
Confidence 4467776654422211 1112233333 23444 99999999999999999876 3489999999999999999873
Q ss_pred --CCCCcEEEEcccccc-cc-ccCCCccEEEeccccceeccCCCChHHH------HHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 92 --NRPQLKYIKMDVRQM-DE-FQTGSFDSVVDKGTLDSLLCGSNSRQNA------TQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 92 --~~~~~~~~~~d~~~~-~~-~~~~~fD~I~~~~~l~~~~~~~~~~~~~------~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+..|++++++|+.++ +. +++++||.|++..+..+. ..... ..+++++.++|+|||++++.+...
T Consensus 80 ~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~~p~~-----~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~ 153 (218)
T 3dxy_A 80 EEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWH-----KARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWE 153 (218)
T ss_dssp HTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEESCCCCC-----SGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred HhCCCcEEEEECCHHHHHHHHcCCCChheEEEeCCCCcc-----chhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCH
Confidence 446899999999885 21 578899999987433221 11111 259999999999999999988544
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=119.88 Aligned_cols=99 Identities=14% Similarity=0.198 Sum_probs=76.6
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccc---ccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM---DEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~---~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++.. ..+++|+|+|+.+++.+.+..+...++.++.+|+... ..+ .++||+|+++..
T Consensus 59 ~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~-~~~fD~V~~~~~-- 135 (210)
T 1nt2_A 59 ERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGI-VEKVDLIYQDIA-- 135 (210)
T ss_dssp CEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTT-CCCEEEEEECCC--
T ss_pred CEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhccc-ccceeEEEEecc--
Confidence 399999999999999998874 3489999999998766555443335788888998774 113 378999999721
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+.+...+++++.++|||||++++..
T Consensus 136 -------~~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 136 -------QKNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp -------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -------ChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 12445567999999999999999875
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=120.64 Aligned_cols=105 Identities=19% Similarity=0.338 Sum_probs=88.3
Q ss_pred hhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc-cccCCCccEEEec
Q 026558 42 LYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD-EFQTGSFDSVVDK 120 (237)
Q Consensus 42 ~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~~~fD~I~~~ 120 (237)
..+..+..+|||+|||+|.++..+++.+ .+++++|+|+.+++.++++. .++..+|+.+.. .+++++||+|++.
T Consensus 27 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~-----~~~~~~d~~~~~~~~~~~~fD~v~~~ 100 (230)
T 3cc8_A 27 KHIKKEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL-----DHVVLGDIETMDMPYEEEQFDCVIFG 100 (230)
T ss_dssp TTCCTTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS-----SEEEESCTTTCCCCSCTTCEEEEEEE
T ss_pred HHhccCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC-----CcEEEcchhhcCCCCCCCccCEEEEC
Confidence 3333333499999999999999999886 59999999999999999875 378889987632 2667899999999
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
.+++|+ .+...+++++.++|+|||.+++.+..
T Consensus 101 ~~l~~~-------~~~~~~l~~~~~~L~~gG~l~~~~~~ 132 (230)
T 3cc8_A 101 DVLEHL-------FDPWAVIEKVKPYIKQNGVILASIPN 132 (230)
T ss_dssp SCGGGS-------SCHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred Chhhhc-------CCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 999998 66789999999999999999998754
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=115.52 Aligned_cols=100 Identities=15% Similarity=0.164 Sum_probs=79.0
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~ 128 (237)
.+|||+|||+|.++..+++.+ +++|+|+|+.+++. ..+++++++|+.+. ++.++||+|+++.++++...
T Consensus 25 ~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~-------~~~~~~~~~d~~~~--~~~~~fD~i~~n~~~~~~~~ 93 (170)
T 3q87_B 25 KIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES-------HRGGNLVRADLLCS--INQESVDVVVFNPPYVPDTD 93 (170)
T ss_dssp CEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT-------CSSSCEEECSTTTT--BCGGGCSEEEECCCCBTTCC
T ss_pred CeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc-------ccCCeEEECChhhh--cccCCCCEEEECCCCccCCc
Confidence 399999999999999999987 99999999999987 25789999999883 45689999999988775410
Q ss_pred C--CCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 129 G--SNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 129 ~--~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
. ..+......+++++.+.+ |||.+++.....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~ 126 (170)
T 3q87_B 94 DPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA 126 (170)
T ss_dssp CTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG
T ss_pred cccccCCcchHHHHHHHHhhC-CCCEEEEEEecC
Confidence 0 001123456788888888 999999877443
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-15 Score=128.89 Aligned_cols=108 Identities=19% Similarity=0.250 Sum_probs=90.9
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||+|||+|.++..+++.+. +++++|+|+.+++.|++++.. ..+++++++|+.+.. .+.++||+|+++.++++.
T Consensus 235 ~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~-~~~~~fD~Ii~npp~~~~- 311 (381)
T 3dmg_A 235 RQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEAL-TEEARFDIIVTNPPFHVG- 311 (381)
T ss_dssp CEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTS-CTTCCEEEEEECCCCCTT-
T ss_pred CEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhcc-ccCCCeEEEEECCchhhc-
Confidence 4999999999999999999875 999999999999999999852 235899999999876 445899999999998861
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
..........+++++.++|+|||+++++....
T Consensus 312 -~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~ 343 (381)
T 3dmg_A 312 -GAVILDVAQAFVNVAAARLRPGGVFFLVSNPF 343 (381)
T ss_dssp -CSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred -ccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence 11123788899999999999999999987544
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=115.76 Aligned_cols=104 Identities=15% Similarity=0.193 Sum_probs=83.8
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++.+..+++|+|+|+.+++.|++++... .++.++.+|+.+......+.||+|+++.+++.
T Consensus 33 ~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~~~ 112 (177)
T 2esr_A 33 GRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPYAK 112 (177)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSSHH
T ss_pred CeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCCCCc
Confidence 499999999999999999886569999999999999999998532 36899999998743233567999999876532
Q ss_pred eccCCCChHHHHHHHHHHH--HhcCCCcEEEEEEcCC
Q 026558 126 LLCGSNSRQNATQMLKEVW--RVLKDKGVYILVTYGA 160 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~--~~L~pgG~l~~~~~~~ 160 (237)
......++.+. ++|+|||++++.+...
T Consensus 113 --------~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 113 --------ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp --------HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred --------chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 34566677776 9999999999987544
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.2e-15 Score=119.87 Aligned_cols=99 Identities=15% Similarity=0.108 Sum_probs=82.2
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccccc---CCCccEEEeccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQ---TGSFDSVVDKGT 122 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~---~~~fD~I~~~~~ 122 (237)
.+|||+|||+|..+..++... ..+++|+|+|+.+++.|+++.. +..+++++++|+.+++ +. .++||+|++..+
T Consensus 72 ~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~~~fD~V~~~~~ 150 (240)
T 1xdz_A 72 NTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFG-QRKDVRESYDIVTARAV 150 (240)
T ss_dssp CEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHT-TCTTTTTCEEEEEEECC
T ss_pred CEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhc-ccccccCCccEEEEecc
Confidence 499999999999999998643 3499999999999999998874 3347999999998876 32 578999999752
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
.+...+++.+.++|+|||++++....
T Consensus 151 -----------~~~~~~l~~~~~~LkpgG~l~~~~g~ 176 (240)
T 1xdz_A 151 -----------ARLSVLSELCLPLVKKNGLFVALKAA 176 (240)
T ss_dssp -----------SCHHHHHHHHGGGEEEEEEEEEEECC
T ss_pred -----------CCHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 44688999999999999999887643
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=119.09 Aligned_cols=104 Identities=15% Similarity=0.107 Sum_probs=85.1
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CC--CCcEEEEcccccccc-ccCCC-ccEEEeccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NR--PQLKYIKMDVRQMDE-FQTGS-FDSVVDKGT 122 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~--~~~~~~~~d~~~~~~-~~~~~-fD~I~~~~~ 122 (237)
.+|||+|||+|.++..++..+..+++|+|+|+.+++.|++++. +. .+++++++|+.+... +..++ ||+|+++.+
T Consensus 55 ~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~ 134 (201)
T 2ift_A 55 SECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPP 134 (201)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCC
T ss_pred CeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEECCC
Confidence 3999999999999999888775699999999999999999874 33 578999999987641 23578 999999877
Q ss_pred cceeccCCCChHHHHHHHHHH--HHhcCCCcEEEEEEcCC
Q 026558 123 LDSLLCGSNSRQNATQMLKEV--WRVLKDKGVYILVTYGA 160 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~--~~~L~pgG~l~~~~~~~ 160 (237)
++ . .....+++.+ .++|+|||++++.+...
T Consensus 135 ~~-~-------~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 135 FH-F-------NLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp SS-S-------CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CC-C-------ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 54 3 4567788888 67899999999887544
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.1e-15 Score=136.02 Aligned_cols=104 Identities=16% Similarity=0.257 Sum_probs=89.4
Q ss_pred CcEEEEccCCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHcC--------CCCCcEEEEccccccccccCCCccEEE
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYS--------NRPQLKYIKMDVRQMDEFQTGSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~--~~~~~vD~s~~~~~~a~~~~~--------~~~~~~~~~~d~~~~~~~~~~~fD~I~ 118 (237)
.+|||||||+|.++..+++.+. .+++|+|+|+.+++.|++++. +.++++++++|+.+++ +..++||+|+
T Consensus 723 ~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp-~~d~sFDlVV 801 (950)
T 3htx_A 723 STLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFD-SRLHDVDIGT 801 (950)
T ss_dssp SEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCC-TTSCSCCEEE
T ss_pred CEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCC-cccCCeeEEE
Confidence 4999999999999999999872 499999999999999998542 3357999999999988 7778999999
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+..+++|+ +......+++++.++|+|| .+++.+..
T Consensus 802 ~~eVLeHL-----~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 802 CLEVIEHM-----EEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp EESCGGGS-----CHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred EeCchhhC-----ChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 99999999 4455667999999999999 77776643
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=128.89 Aligned_cols=114 Identities=10% Similarity=0.076 Sum_probs=89.1
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcC---------C--CCCcEEEEccc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYS---------N--RPQLKYIKMDV 103 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~---------~--~~~~~~~~~d~ 103 (237)
+..++.........+|||||||+|.+++.++.. +..+++|||+|+.+++.|+++.+ + ..+++|+++|+
T Consensus 162 i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~ 241 (438)
T 3uwp_A 162 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF 241 (438)
T ss_dssp HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCT
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcc
Confidence 455666554444459999999999999999865 33369999999999999987531 1 25799999999
Q ss_pred cccccccC--CCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 104 RQMDEFQT--GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 104 ~~~~~~~~--~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.+++ +.. ..||+|+++.++. . .+....|.+++++|||||++++...
T Consensus 242 ~~lp-~~d~~~~aDVVf~Nn~~F-~-------pdl~~aL~Ei~RvLKPGGrIVssE~ 289 (438)
T 3uwp_A 242 LSEE-WRERIANTSVIFVNNFAF-G-------PEVDHQLKERFANMKEGGRIVSSKP 289 (438)
T ss_dssp TSHH-HHHHHHTCSEEEECCTTC-C-------HHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred cCCc-cccccCCccEEEEccccc-C-------chHHHHHHHHHHcCCCCcEEEEeec
Confidence 9887 543 4799999987653 3 6778888999999999999998754
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-15 Score=122.97 Aligned_cols=116 Identities=16% Similarity=0.136 Sum_probs=89.8
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-C-CeEEEEeCCHH------HHHHHHHHcCCC---CCcEEEEcc---
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-Y-EDVVNVDISSV------VIEAMMKKYSNR---PQLKYIKMD--- 102 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~-~~~~~vD~s~~------~~~~a~~~~~~~---~~~~~~~~d--- 102 (237)
..++......++.+|||||||+|.++..+++.. . .+++|+|+|+. +++.|++++... +++++.++|
T Consensus 33 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 112 (275)
T 3bkx_A 33 LAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLS 112 (275)
T ss_dssp HHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTT
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence 344444433333499999999999999999873 2 59999999997 999999987432 478999998
Q ss_pred ccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 103 VRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 103 ~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
...++ +++++||+|++..+++++ .+...+++.+.++++|||++++.+...
T Consensus 113 ~~~~~-~~~~~fD~v~~~~~l~~~-------~~~~~~~~~~~~l~~~gG~l~~~~~~~ 162 (275)
T 3bkx_A 113 DDLGP-IADQHFDRVVLAHSLWYF-------ASANALALLFKNMAAVCDHVDVAEWSM 162 (275)
T ss_dssp TCCGG-GTTCCCSEEEEESCGGGS-------SCHHHHHHHHHHHTTTCSEEEEEEECS
T ss_pred hccCC-CCCCCEEEEEEccchhhC-------CCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 33444 667899999999999998 445567777777777899999987644
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-16 Score=129.55 Aligned_cols=104 Identities=13% Similarity=0.098 Sum_probs=80.0
Q ss_pred CcEEEEccCCchhHHHH----HHcC-CCe--EEEEeCCHHHHHHHHHHcCC---CCCcEE--EEccccccc-----cccC
Q 026558 49 QRILIVGCGNSAFSEGM----VDDG-YED--VVNVDISSVVIEAMMKKYSN---RPQLKY--IKMDVRQMD-----EFQT 111 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~----~~~~-~~~--~~~vD~s~~~~~~a~~~~~~---~~~~~~--~~~d~~~~~-----~~~~ 111 (237)
.+|||||||+|.++..+ +..+ ... ++|+|+|+.|++.|+++... ..++.+ ..+++.+++ .+++
T Consensus 54 ~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (292)
T 2aot_A 54 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKEL 133 (292)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTCC
T ss_pred CeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccCC
Confidence 39999999999866543 3332 233 39999999999999998742 234444 455555443 1457
Q ss_pred CCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
++||+|++..+++|+ .++..+|+++.++|||||++++....
T Consensus 134 ~~fD~V~~~~~l~~~-------~d~~~~l~~~~r~LkpgG~l~i~~~~ 174 (292)
T 2aot_A 134 QKWDFIHMIQMLYYV-------KDIPATLKFFHSLLGTNAKMLIIVVS 174 (292)
T ss_dssp CCEEEEEEESCGGGC-------SCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CceeEEEEeeeeeec-------CCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 899999999999999 88899999999999999999987644
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.5e-15 Score=116.99 Aligned_cols=111 Identities=18% Similarity=0.241 Sum_probs=84.6
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccc-ccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDE-FQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~-~~~~~fD~I~~~~~l~ 124 (237)
.+|||||||+|.++..+++.. ...++|+|+|+.+++.|+++.. +..++.++++|+.+++. ++.++||.|++..+..
T Consensus 40 ~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~~p 119 (213)
T 2fca_A 40 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDP 119 (213)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCCC
T ss_pred ceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECCCC
Confidence 399999999999999999874 3599999999999999999874 34689999999988643 5678899998764322
Q ss_pred eeccCCC-ChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 125 SLLCGSN-SRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 125 ~~~~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+.-..+. .......+++++.++|+|||.+++.+..
T Consensus 120 ~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~ 155 (213)
T 2fca_A 120 WPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN 155 (213)
T ss_dssp CCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC
T ss_pred CcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC
Confidence 2100000 0001367899999999999999998744
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-15 Score=122.41 Aligned_cols=102 Identities=15% Similarity=0.287 Sum_probs=83.1
Q ss_pred CcEEEEccCCch----hHHHHHHc-C----CCeEEEEeCCHHHHHHHHHHcC------------------------CC--
Q 026558 49 QRILIVGCGNSA----FSEGMVDD-G----YEDVVNVDISSVVIEAMMKKYS------------------------NR-- 93 (237)
Q Consensus 49 ~~iLdlG~G~G~----~~~~~~~~-~----~~~~~~vD~s~~~~~~a~~~~~------------------------~~-- 93 (237)
.+|||+|||||. +++.+++. + ..+++|+|+|+.+++.|+++.- ..
T Consensus 107 ~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 186 (274)
T 1af7_A 107 YRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLV 186 (274)
T ss_dssp EEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEE
T ss_pred cEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCce
Confidence 399999999998 55556654 2 1389999999999999998741 00
Q ss_pred -------CCcEEEEcccccccccc-CCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 94 -------PQLKYIKMDVRQMDEFQ-TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 94 -------~~~~~~~~d~~~~~~~~-~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
.++.|.+.|+.+.+ ++ .++||+|+|.+++.++ +++....+++++.++|+|||.+++.
T Consensus 187 ~v~~~lr~~V~F~~~dl~~~~-~~~~~~fDlI~crnvliyf-----~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 187 RVRQELANYVEFSSVNLLEKQ-YNVPGPFDAIFCRNVMIYF-----DKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EECHHHHTTEEEEECCTTCSS-CCCCCCEEEEEECSSGGGS-----CHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eechhhcccCeEEecccCCCC-CCcCCCeeEEEECCchHhC-----CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 25889999998854 44 5789999999999988 6677799999999999999999874
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.5e-15 Score=120.37 Aligned_cols=123 Identities=13% Similarity=0.139 Sum_probs=91.6
Q ss_pred HHHHhhCCCC--CCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEcccccccc-ccC
Q 026558 38 PLIKLYVPSH--HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDE-FQT 111 (237)
Q Consensus 38 ~~l~~~~~~~--~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~-~~~ 111 (237)
.++....... ..+|||+|||+|.++..+++.+..+++|+|+++.+++.|++++. +. .+++++++|+.+... ++.
T Consensus 38 ~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~ 117 (259)
T 3lpm_A 38 VLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPK 117 (259)
T ss_dssp HHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCT
T ss_pred HHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhcc
Confidence 3444554432 34999999999999999999875699999999999999999974 22 369999999988763 457
Q ss_pred CCccEEEeccccceec-cC------------CCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 112 GSFDSVVDKGTLDSLL-CG------------SNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~-~~------------~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
++||+|+++.++.... .+ .........+++.+.++|+|||++++.....
T Consensus 118 ~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 179 (259)
T 3lpm_A 118 ERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPE 179 (259)
T ss_dssp TCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred CCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHH
Confidence 8999999987754320 00 0112456789999999999999999976433
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-14 Score=121.77 Aligned_cols=111 Identities=13% Similarity=0.076 Sum_probs=88.1
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.+++.++..+ ...++|+|+++.+++.|++++. +..++++.++|+.+++ .+...||+|+++.++.
T Consensus 205 ~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~-~~~~~~D~Ii~npPyg 283 (354)
T 3tma_A 205 MRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLP-RFFPEVDRILANPPHG 283 (354)
T ss_dssp CCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGG-GTCCCCSEEEECCCSC
T ss_pred CEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCc-cccCCCCEEEECCCCc
Confidence 499999999999999999864 2499999999999999999985 3237999999999987 5566799999998765
Q ss_pred eeccCC-CChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 125 SLLCGS-NSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 125 ~~~~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
...... ........+++++.++|+|||.+++.+...
T Consensus 284 ~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~ 320 (354)
T 3tma_A 284 LRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP 320 (354)
T ss_dssp C----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH
T ss_pred CccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 431111 011234789999999999999999988543
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=123.48 Aligned_cols=114 Identities=18% Similarity=0.262 Sum_probs=92.8
Q ss_pred HHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccc-cccCC
Q 026558 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMD-EFQTG 112 (237)
Q Consensus 38 ~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~-~~~~~ 112 (237)
.++......+..+|||||||+|.++..+++.. ..+++++|+ +.+++.|++++... ++++++.+|+.+.. +++ +
T Consensus 170 ~~l~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~ 247 (363)
T 3dp7_A 170 KALEIVFSHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-T 247 (363)
T ss_dssp HHHHHHGGGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-C
T ss_pred HHHHHhcccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-C
Confidence 34444333333499999999999999999865 349999999 99999999998532 37999999998752 144 7
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+||+|++..++|++ +.++...+|+++.++|+|||++++.+.
T Consensus 248 ~~D~v~~~~vlh~~-----~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (363)
T 3dp7_A 248 GFDAVWMSQFLDCF-----SEEEVISILTRVAQSIGKDSKVYIMET 288 (363)
T ss_dssp CCSEEEEESCSTTS-----CHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CcCEEEEechhhhC-----CHHHHHHHHHHHHHhcCCCcEEEEEee
Confidence 89999999999988 566778899999999999999999874
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-15 Score=120.42 Aligned_cols=99 Identities=11% Similarity=0.216 Sum_probs=81.6
Q ss_pred HHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccc-cccccc-CCCcc
Q 026558 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVR-QMDEFQ-TGSFD 115 (237)
Q Consensus 38 ~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-~~~~~~-~~~fD 115 (237)
.++.....++. +|||+|||+|.++..+++.+. +++|+|+|+.+++.++++. ++++++++|+. .++ ++ +++||
T Consensus 40 ~~~~~~~~~~~-~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~---~~~~~~~~d~~~~~~-~~~~~~fD 113 (226)
T 3m33_A 40 LWLSRLLTPQT-RVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARANA---PHADVYEWNGKGELP-AGLGAPFG 113 (226)
T ss_dssp HHHHHHCCTTC-EEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHC---TTSEEEECCSCSSCC-TTCCCCEE
T ss_pred HHHHhcCCCCC-eEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhC---CCceEEEcchhhccC-CcCCCCEE
Confidence 33444444454 999999999999999999865 9999999999999999994 68999999995 455 66 78999
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEE
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 155 (237)
+|+++. +...+++++.++|+|||+++.
T Consensus 114 ~v~~~~-------------~~~~~l~~~~~~LkpgG~l~~ 140 (226)
T 3m33_A 114 LIVSRR-------------GPTSVILRLPELAAPDAHFLY 140 (226)
T ss_dssp EEEEES-------------CCSGGGGGHHHHEEEEEEEEE
T ss_pred EEEeCC-------------CHHHHHHHHHHHcCCCcEEEE
Confidence 999862 235578899999999999983
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-15 Score=122.87 Aligned_cols=144 Identities=12% Similarity=0.146 Sum_probs=97.7
Q ss_pred hhhhHHHhccCCCCceeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC
Q 026558 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS 91 (237)
Q Consensus 13 ~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~ 91 (237)
+.||+..+......+......+.+...+...+.....+|||+|||+|.++..+++.. ..+++++|+|+.+++.|+++..
T Consensus 75 ~~f~~~~~~~~~~~~ipr~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~ 154 (276)
T 2b3t_A 75 REFWSLPLFVSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQ 154 (276)
T ss_dssp EEETTEEEECCTTSCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHH
T ss_pred eEECCceEEeCCCCcccCchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH
Confidence 345655555444433311111113333333332223499999999999999998763 4599999999999999999974
Q ss_pred --CCCCcEEEEccccccccccCCCccEEEeccccceec------------------cCCCChHHHHHHHHHHHHhcCCCc
Q 026558 92 --NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL------------------CGSNSRQNATQMLKEVWRVLKDKG 151 (237)
Q Consensus 92 --~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~------------------~~~~~~~~~~~~l~~~~~~L~pgG 151 (237)
+..++.++++|+.+. ++.++||+|+++.++.... .+..+......+++++.++|+|||
T Consensus 155 ~~~~~~v~~~~~d~~~~--~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG 232 (276)
T 2b3t_A 155 HLAIKNIHILQSDWFSA--LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGG 232 (276)
T ss_dssp HHTCCSEEEECCSTTGG--GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEE
T ss_pred HcCCCceEEEEcchhhh--cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCC
Confidence 334799999999875 3467899999986543220 000112467889999999999999
Q ss_pred EEEEEEc
Q 026558 152 VYILVTY 158 (237)
Q Consensus 152 ~l~~~~~ 158 (237)
.+++...
T Consensus 233 ~l~~~~~ 239 (276)
T 2b3t_A 233 FLLLEHG 239 (276)
T ss_dssp EEEEECC
T ss_pred EEEEEEC
Confidence 9988753
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-16 Score=134.35 Aligned_cols=102 Identities=17% Similarity=0.186 Sum_probs=83.4
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~ 128 (237)
.+|||+|||+|.++..+++.+. +++|+|+|+.+++.|+++........+...+...++ +++++||+|++..+++|+
T Consensus 109 ~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~-~~~~~fD~I~~~~vl~h~-- 184 (416)
T 4e2x_A 109 PFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVR-RTEGPANVIYAANTLCHI-- 184 (416)
T ss_dssp CEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHH-HHHCCEEEEEEESCGGGC--
T ss_pred CEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcc-cCCCCEEEEEECChHHhc--
Confidence 4999999999999999999876 999999999999999987211011122233444455 667899999999999999
Q ss_pred CCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 129 GSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
.+...+++++.++|+|||++++.+..
T Consensus 185 -----~d~~~~l~~~~r~LkpgG~l~i~~~~ 210 (416)
T 4e2x_A 185 -----PYVQSVLEGVDALLAPDGVFVFEDPY 210 (416)
T ss_dssp -----TTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -----CCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 78999999999999999999997643
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.6e-17 Score=129.99 Aligned_cols=98 Identities=16% Similarity=0.147 Sum_probs=83.8
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.|++++. +. .+++++++|+.+++ +.++||+|+++.++++
T Consensus 80 ~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~~~~~~~ 156 (241)
T 3gdh_A 80 DVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA--SFLKADVVFLSPPWGG 156 (241)
T ss_dssp SEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG--GGCCCSEEEECCCCSS
T ss_pred CEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc--ccCCCCEEEECCCcCC
Confidence 399999999999999999987 599999999999999999874 22 47999999999886 5679999999999887
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
. ......+.++.++|+|||.+++.
T Consensus 157 ~-------~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 157 P-------DYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp G-------GGGGSSSBCTTTSCSSCHHHHHH
T ss_pred c-------chhhhHHHHHHhhcCCcceeHHH
Confidence 7 44455677889999999986653
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-14 Score=112.12 Aligned_cols=101 Identities=12% Similarity=0.146 Sum_probs=83.4
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++.. ..+++++|+|+.+++.++++.. +..++.+.++|+.+.+ +.++||+|++...
T Consensus 67 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~i~~~~~--- 141 (207)
T 1jsx_A 67 ERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP--SEPPFDGVISRAF--- 141 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC--CCSCEEEEECSCS---
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC--ccCCcCEEEEecc---
Confidence 399999999999999999873 3599999999999999999874 3346899999998875 4578999998642
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCch
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 162 (237)
.....+++++.++|+|||.+++.......
T Consensus 142 --------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 170 (207)
T 1jsx_A 142 --------ASLNDMVSWCHHLPGEQGRFYALKGQMPE 170 (207)
T ss_dssp --------SSHHHHHHHHTTSEEEEEEEEEEESSCCH
T ss_pred --------CCHHHHHHHHHHhcCCCcEEEEEeCCCch
Confidence 34578999999999999999998754433
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.6e-15 Score=125.15 Aligned_cols=118 Identities=18% Similarity=0.254 Sum_probs=89.4
Q ss_pred HHHhhCCCC-CCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCC-----CCcEEEEccccccccccC
Q 026558 39 LIKLYVPSH-HQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR-----PQLKYIKMDVRQMDEFQT 111 (237)
Q Consensus 39 ~l~~~~~~~-~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~~~~~ 111 (237)
++...+... ..+|||+|||+|.++..+++.+ ..+++++|+|+.+++.|++++... .++++..+|+.+. ++.
T Consensus 213 ~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~--~~~ 290 (375)
T 4dcm_A 213 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG--VEP 290 (375)
T ss_dssp HHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTT--CCT
T ss_pred HHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhcc--CCC
Confidence 444444333 2599999999999999999986 459999999999999999987421 2578899999874 567
Q ss_pred CCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
++||+|+++.++++.. .........+++++.++|+|||+++++....
T Consensus 291 ~~fD~Ii~nppfh~~~--~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~ 337 (375)
T 4dcm_A 291 FRFNAVLCNPPFHQQH--ALTDNVAWEMFHHARRCLKINGELYIVANRH 337 (375)
T ss_dssp TCEEEEEECCCC---------CCHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred CCeeEEEECCCcccCc--ccCHHHHHHHHHHHHHhCCCCcEEEEEEECC
Confidence 8999999999887530 0012344578999999999999999977544
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-15 Score=118.76 Aligned_cols=107 Identities=14% Similarity=0.101 Sum_probs=66.8
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCC-CcEEEEccccccccccC-----CCccEEEecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRP-QLKYIKMDVRQMDEFQT-----GSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~-----~~fD~I~~~~ 121 (237)
.+|||+|||+|.++..+++.+ ..+++|+|+|+.+++.|++++.... +++++++|+.+. ++. ++||+|+++.
T Consensus 32 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~fD~i~~np 109 (215)
T 4dzr_A 32 TRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEW--LIERAERGRPWHAIVSNP 109 (215)
T ss_dssp EEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHH--HHHHHHTTCCBSEEEECC
T ss_pred CEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhh--hhhhhhccCcccEEEECC
Confidence 499999999999999999986 3499999999999999999985322 688888898873 444 8999999987
Q ss_pred ccceecc-------------------CCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 122 TLDSLLC-------------------GSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 122 ~l~~~~~-------------------~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+++.... +..+......+++++.++|+|||++++..
T Consensus 110 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 164 (215)
T 4dzr_A 110 PYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLE 164 (215)
T ss_dssp CCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEE
T ss_pred CCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 6643210 00111223788999999999999944444
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.9e-15 Score=116.41 Aligned_cols=102 Identities=8% Similarity=0.057 Sum_probs=82.9
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+|||+|||+|.++..+++.+..+++++|+|+.+++.|++++. +..+++++++|+.+......++||+|+++.+++ .
T Consensus 56 ~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~-~ 134 (202)
T 2fpo_A 56 AQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR-R 134 (202)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS-T
T ss_pred CeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC-C
Confidence 3999999999999999888875699999999999999999884 235899999999874324567899999987744 2
Q ss_pred ccCCCChHHHHHHHHHHHH--hcCCCcEEEEEEc
Q 026558 127 LCGSNSRQNATQMLKEVWR--VLKDKGVYILVTY 158 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~--~L~pgG~l~~~~~ 158 (237)
.....+++.+.+ +|+|||++++.+.
T Consensus 135 -------~~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 135 -------GLLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp -------TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred -------CcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 445667777765 5999999988774
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-14 Score=114.11 Aligned_cols=100 Identities=18% Similarity=0.274 Sum_probs=83.9
Q ss_pred CcEEEEccCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc--ccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE--FQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~--~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++. | ..+|+++|+++.+++.++++....+|+..+.+|...... +..+.+|+|++...
T Consensus 79 ~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~~-- 156 (233)
T 4df3_A 79 DRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADVA-- 156 (233)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEECCC--
T ss_pred CEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEecc--
Confidence 49999999999999999986 3 349999999999999999999877899999999876432 45678999987532
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+. .+...++.++.++|||||++++..
T Consensus 157 ~~-------~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 157 QP-------EQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp CT-------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC-------hhHHHHHHHHHHhccCCCEEEEEE
Confidence 22 567889999999999999998865
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-15 Score=115.29 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=86.9
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccccCCCc
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSF 114 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~f 114 (237)
-..+...+++.. +|||||||+|.++..++... ..+|+++|+|+.|++.+++++.. ....++...|.... .+.+.|
T Consensus 40 Y~~~~~~l~~~~-~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~--~~~~~~ 116 (200)
T 3fzg_A 40 YTYVFGNIKHVS-SILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD--VYKGTY 116 (200)
T ss_dssp HHHHHHHSCCCS-EEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH--HTTSEE
T ss_pred HHHHHhhcCCCC-eEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc--CCCCCc
Confidence 333444555555 99999999999999997763 34999999999999999999842 12223333566544 357889
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
|+|++..++|++ ++.+..+..+++.|+|||+++...
T Consensus 117 DvVLa~k~LHlL-------~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 117 DVVFLLKMLPVL-------KQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp EEEEEETCHHHH-------HHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred ChhhHhhHHHhh-------hhhHHHHHHHHHHhCCCCEEEEeC
Confidence 999999999999 888888889999999999998765
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.59 E-value=9.2e-15 Score=116.43 Aligned_cols=97 Identities=14% Similarity=0.246 Sum_probs=81.3
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc----cccccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ----MDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~----~~~~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|.++..+++.. ..+++|+|+|+.+++.|+++.....++.++.+|+.+ .+ +. ++||+|+..
T Consensus 76 ~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~-~~-~~~D~v~~~--- 150 (230)
T 1fbn_A 76 SKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYAN-IV-EKVDVIYED--- 150 (230)
T ss_dssp CEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTT-TS-CCEEEEEEC---
T ss_pred CEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccc-cC-ccEEEEEEe---
Confidence 489999999999999999883 359999999999999999998665789999999987 44 44 789999832
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
+ ..+.....+++++.++|+|||++++.
T Consensus 151 --~----~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 151 --V----AQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp --C----CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --c----CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 2 12345577899999999999999886
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.3e-15 Score=125.19 Aligned_cols=100 Identities=19% Similarity=0.217 Sum_probs=83.2
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++.+..+++|+|+|+ +++.|+++++ +. .++.++++|+.+++ ++.++||+|++..+...
T Consensus 66 ~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Ivs~~~~~~ 143 (340)
T 2fyt_A 66 KVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVH-LPVEKVDVIISEWMGYF 143 (340)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSCSCEEEEEECCCBTT
T ss_pred CEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhc-CCCCcEEEEEEcCchhh
Confidence 49999999999999999998756999999997 9999998874 22 57999999999886 77789999999763222
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 154 (237)
+ ........++.++.++|+|||+++
T Consensus 144 l----~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 144 L----LFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp B----TTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred c----cCHHHHHHHHHHHHhhcCCCcEEE
Confidence 2 122667889999999999999987
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-15 Score=115.92 Aligned_cols=104 Identities=15% Similarity=0.193 Sum_probs=82.3
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEcccccccc---ccCCCccEEEeccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDE---FQTGSFDSVVDKGT 122 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~---~~~~~fD~I~~~~~ 122 (237)
.+|||+|||+|.++..+++.+..+++|+|+|+.+++.|++++.. .++++++++|+.+... ...++||+|+++.+
T Consensus 46 ~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~ 125 (187)
T 2fhp_A 46 GMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPP 125 (187)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCC
Confidence 49999999999999998887656999999999999999998742 1468999999987431 22678999999877
Q ss_pred cceeccCCCChHHHHHHHHHH--HHhcCCCcEEEEEEcCC
Q 026558 123 LDSLLCGSNSRQNATQMLKEV--WRVLKDKGVYILVTYGA 160 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~--~~~L~pgG~l~~~~~~~ 160 (237)
++. ......++.+ .++|+|||++++.+...
T Consensus 126 ~~~--------~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 126 YAK--------QEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp GGG--------CCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCc--------hhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 542 2334555556 88999999999887543
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.1e-15 Score=114.99 Aligned_cols=138 Identities=12% Similarity=0.061 Sum_probs=98.0
Q ss_pred CCCChhhhHHHhccCCCCceeec--CCcChH-HHHHhhCCCCCCcEEEEccCCchhHHHHHHcCC--CeEEEEeCCHHHH
Q 026558 9 AYGEPWYWDNRYAHESGPFDWYQ--KYPSLA-PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVI 83 (237)
Q Consensus 9 ~~~~~~~w~~~y~~~~~~~~~~~--~~~~~~-~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~--~~~~~vD~s~~~~ 83 (237)
.+-+..+|+..|......+.... ....+. .++......+..+|||+|||+|.++..+++.+. .+++++|+++.++
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~ 115 (215)
T 2yxe_A 36 EFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELA 115 (215)
T ss_dssp GGSCGGGGGGTTSCSCEEEETTEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHH
T ss_pred HcCCchhhhhcccCCCccCCCCcEeCcHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHH
Confidence 35556677777765433222100 112222 333333222334999999999999999998752 5999999999999
Q ss_pred HHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 84 EAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 84 ~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+.+++++. +..++.+..+|+.... ...++||+|++..+++++ . +++.++|+|||++++.....
T Consensus 116 ~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~~~~~-------~------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 116 EKAERTLRKLGYDNVIVIVGDGTLGY-EPLAPYDRIYTTAAGPKI-------P------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp HHHHHHHHHHTCTTEEEEESCGGGCC-GGGCCEEEEEESSBBSSC-------C------HHHHHTEEEEEEEEEEESSS
T ss_pred HHHHHHHHHcCCCCeEEEECCcccCC-CCCCCeeEEEECCchHHH-------H------HHHHHHcCCCcEEEEEECCC
Confidence 99999874 3357899999986543 236789999999999887 2 47899999999999987544
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-14 Score=108.93 Aligned_cols=101 Identities=13% Similarity=0.174 Sum_probs=80.6
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC--CC-CcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN--RP-QLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~--~~-~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++.. ..+++++|+|+.+++.|++++.. .. ++ ++.+|+.+......++||+|++..+++
T Consensus 27 ~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~~~~~ 105 (178)
T 3hm2_A 27 ETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIGGGLT 105 (178)
T ss_dssp EEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEECC-TT
T ss_pred CeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEECCccc
Confidence 499999999999999999874 35999999999999999998742 23 67 888888553212237899999987765
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
+ ..+++++.++|+|||++++.+...+
T Consensus 106 ~-----------~~~l~~~~~~L~~gG~l~~~~~~~~ 131 (178)
T 3hm2_A 106 A-----------PGVFAAAWKRLPVGGRLVANAVTVE 131 (178)
T ss_dssp C-----------TTHHHHHHHTCCTTCEEEEEECSHH
T ss_pred H-----------HHHHHHHHHhcCCCCEEEEEeeccc
Confidence 3 5689999999999999998876553
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.5e-15 Score=121.72 Aligned_cols=111 Identities=9% Similarity=0.079 Sum_probs=89.9
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCC-CcEEEEccccccccccCC
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRP-QLKYIKMDVRQMDEFQTG 112 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~-~~~~~~~d~~~~~~~~~~ 112 (237)
....+...+.++. +|||+|||+|.++..+++.+..+++|+|+|+.+++.|++++. +.. +++++++|+.++. . .+
T Consensus 115 ~~~~l~~~~~~~~-~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~-~-~~ 191 (278)
T 2frn_A 115 ERVRMAKVAKPDE-LVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-G-EN 191 (278)
T ss_dssp HHHHHHHHCCTTC-EEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-C-CS
T ss_pred HHHHHHHhCCCCC-EEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhc-c-cC
Confidence 4455555555555 999999999999999999875479999999999999999874 323 4889999999987 3 77
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+||+|+++.+. ....+++++.++|+|||++++.+...
T Consensus 192 ~fD~Vi~~~p~-----------~~~~~l~~~~~~LkpgG~l~~~~~~~ 228 (278)
T 2frn_A 192 IADRILMGYVV-----------RTHEFIPKALSIAKDGAIIHYHNTVP 228 (278)
T ss_dssp CEEEEEECCCS-----------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred CccEEEECCch-----------hHHHHHHHHHHHCCCCeEEEEEEeec
Confidence 89999997542 22567889999999999999987653
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=9.6e-15 Score=123.48 Aligned_cols=101 Identities=17% Similarity=0.184 Sum_probs=84.5
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++.+..+++|+|+|+ +++.|+++.. +. .+++++++|+.+++ ++.++||+|++..+.+.
T Consensus 68 ~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~Iis~~~~~~ 145 (349)
T 3q7e_A 68 KVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVE-LPVEKVDIIISEWMGYC 145 (349)
T ss_dssp CEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC-CSSSCEEEEEECCCBBT
T ss_pred CEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHcc-CCCCceEEEEEcccccc
Confidence 39999999999999999999766999999995 9999998874 22 34899999999987 77899999999765443
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 155 (237)
+ ........++.++.++|+|||+++.
T Consensus 146 l----~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 146 L----FYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp B----TBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred c----cCchhHHHHHHHHHHhCCCCCEEcc
Confidence 3 2336778899999999999999864
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-14 Score=132.15 Aligned_cols=122 Identities=12% Similarity=0.076 Sum_probs=92.7
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CC--CCcEEEEccccccccccC
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NR--PQLKYIKMDVRQMDEFQT 111 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~--~~~~~~~~d~~~~~~~~~ 111 (237)
.+.++.... ++. +|||+|||+|.+++.++..+..+|+++|+|+.+++.|++++. +. .+++++++|+.+......
T Consensus 530 ~r~~l~~~~-~g~-~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~ 607 (703)
T 3v97_A 530 ARRMLGQMS-KGK-DFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREAN 607 (703)
T ss_dssp HHHHHHHHC-TTC-EEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCC
T ss_pred HHHHHHHhc-CCC-cEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcC
Confidence 344555543 344 899999999999999998876679999999999999999974 32 378999999988532446
Q ss_pred CCccEEEeccccceecc----CCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 112 GSFDSVVDKGTLDSLLC----GSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~----~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
++||+|+++.+...... ..........++..+.++|+|||++++.+..
T Consensus 608 ~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 608 EQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 78999999875321000 0012367888999999999999999987754
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-14 Score=116.11 Aligned_cols=107 Identities=23% Similarity=0.381 Sum_probs=86.2
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCcc
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
..++...++....+|||+|||+|.++..+++.. ..+++|+|+|+.+++.|+++. +++.+..+|+.+++ +++++||
T Consensus 75 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~d~~~~~-~~~~~fD 150 (269)
T 1p91_A 75 VAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---PQVTFCVASSHRLP-FSDTSMD 150 (269)
T ss_dssp HHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---TTSEEEECCTTSCS-BCTTCEE
T ss_pred HHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC---CCcEEEEcchhhCC-CCCCcee
Confidence 344444443333499999999999999999873 349999999999999999986 57899999998887 7788999
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
+|++..+. ..++++.++|+|||++++.+....
T Consensus 151 ~v~~~~~~--------------~~l~~~~~~L~pgG~l~~~~~~~~ 182 (269)
T 1p91_A 151 AIIRIYAP--------------CKAEELARVVKPGGWVITATPGPR 182 (269)
T ss_dssp EEEEESCC--------------CCHHHHHHHEEEEEEEEEEEECTT
T ss_pred EEEEeCCh--------------hhHHHHHHhcCCCcEEEEEEcCHH
Confidence 99986442 147889999999999999886543
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.56 E-value=7.2e-15 Score=111.11 Aligned_cols=104 Identities=13% Similarity=0.199 Sum_probs=80.3
Q ss_pred CCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCC-CcEEEEccccccc-ccc--CCCccEEEecc
Q 026558 46 SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRP-QLKYIKMDVRQMD-EFQ--TGSFDSVVDKG 121 (237)
Q Consensus 46 ~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~-~~~--~~~fD~I~~~~ 121 (237)
++. +|||+|||+|.++..+++.+. .++|+|+|+.+++.|++++.... +++++++|+.+.. ... .++||+|+++.
T Consensus 41 ~~~-~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRG-RFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCC-EEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCC-eEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 444 999999999999999999976 69999999999999999874222 7899999998742 122 34899999997
Q ss_pred ccceeccCCCChHHHHHHHHHH--HHhcCCCcEEEEEEcCC
Q 026558 122 TLDSLLCGSNSRQNATQMLKEV--WRVLKDKGVYILVTYGA 160 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~--~~~L~pgG~l~~~~~~~ 160 (237)
+++ - . ...+++.+ .++|+|||++++.+...
T Consensus 119 ~~~-~-----~---~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 119 PYA-M-----D---LAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CTT-S-----C---TTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred CCc-h-----h---HHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 764 1 1 12344444 49999999999987544
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=9.9e-15 Score=118.12 Aligned_cols=108 Identities=14% Similarity=0.183 Sum_probs=86.6
Q ss_pred HHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC-CCcEEEEccccccccccCCCccE
Q 026558 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDS 116 (237)
Q Consensus 38 ~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~ 116 (237)
+.+.....++. +|||+|||+|.++..+++.+. +++|+|+++.+++.|+++.... ..+++..+|+.+. ++.++||+
T Consensus 112 ~~l~~~~~~~~-~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~--~~~~~fD~ 187 (254)
T 2nxc_A 112 KALARHLRPGD-KVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA--LPFGPFDL 187 (254)
T ss_dssp HHHHHHCCTTC-EEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH--GGGCCEEE
T ss_pred HHHHHhcCCCC-EEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc--CcCCCCCE
Confidence 34444444454 999999999999999999887 9999999999999999987421 1288999998774 34678999
Q ss_pred EEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 117 I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
|+++...+ ....+++++.++|+|||++++....
T Consensus 188 Vv~n~~~~----------~~~~~l~~~~~~LkpgG~lils~~~ 220 (254)
T 2nxc_A 188 LVANLYAE----------LHAALAPRYREALVPGGRALLTGIL 220 (254)
T ss_dssp EEEECCHH----------HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEECCcHH----------HHHHHHHHHHHHcCCCCEEEEEeec
Confidence 99975443 3478999999999999999987643
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-14 Score=115.84 Aligned_cols=110 Identities=15% Similarity=0.179 Sum_probs=80.8
Q ss_pred cEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcC----------CCCCcEEEEccccc-ccc-ccCCCccE
Q 026558 50 RILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS----------NRPQLKYIKMDVRQ-MDE-FQTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~----------~~~~~~~~~~d~~~-~~~-~~~~~fD~ 116 (237)
+|||+|||+|.++..+++.+. ..++|+|+|+.+++.|++++. +..++.++++|+.+ ++. ++.+.+|.
T Consensus 52 ~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~d~ 131 (246)
T 2vdv_E 52 TIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQLSK 131 (246)
T ss_dssp EEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCEEE
T ss_pred EEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccccCE
Confidence 899999999999999999863 489999999999999988753 33689999999987 332 55788999
Q ss_pred EEeccccceeccCC-CChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 117 VVDKGTLDSLLCGS-NSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 117 I~~~~~l~~~~~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
|+...+-.+.-... ........+++++.++|+|||++++.+..
T Consensus 132 v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~ 175 (246)
T 2vdv_E 132 MFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDV 175 (246)
T ss_dssp EEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred EEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEecc
Confidence 98643211100000 00001147999999999999999997643
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.8e-14 Score=113.16 Aligned_cols=137 Identities=16% Similarity=0.120 Sum_probs=94.7
Q ss_pred CCCChhhhHHHhccCCCCceee--cCCcC-hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHH
Q 026558 9 AYGEPWYWDNRYAHESGPFDWY--QKYPS-LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEA 85 (237)
Q Consensus 9 ~~~~~~~w~~~y~~~~~~~~~~--~~~~~-~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~ 85 (237)
.|-+..+|+..|......+... ...+. ...++......+..+|||+|||+|.++..+++.+..+++++|+++.+++.
T Consensus 50 ~f~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~ 129 (235)
T 1jg1_A 50 LSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEF 129 (235)
T ss_dssp GGSCGGGGGGTTSSSCEECSTTCEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHH
T ss_pred hhCCchhhhcCccCCCcccCCCceeccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHH
Confidence 3445556666665443322210 01112 23334333223334999999999999999998753599999999999999
Q ss_pred HHHHcC--CCCCcEEEEcccccccccc-CCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 86 MMKKYS--NRPQLKYIKMDVRQMDEFQ-TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 86 a~~~~~--~~~~~~~~~~d~~~~~~~~-~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
|++++. +..++.+..+|+.. + ++ ...||+|++..+++++ . +++.++|+|||++++.....
T Consensus 130 a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~fD~Ii~~~~~~~~-------~------~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 130 AKRNLERAGVKNVHVILGDGSK-G-FPPKAPYDVIIVTAGAPKI-------P------EPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp HHHHHHHTTCCSEEEEESCGGG-C-CGGGCCEEEEEECSBBSSC-------C------HHHHHTEEEEEEEEEEECSS
T ss_pred HHHHHHHcCCCCcEEEECCccc-C-CCCCCCccEEEECCcHHHH-------H------HHHHHhcCCCcEEEEEEecC
Confidence 999874 33578999999832 2 33 3459999999988877 1 36889999999999987544
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-13 Score=105.68 Aligned_cols=97 Identities=16% Similarity=0.197 Sum_probs=81.0
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+|||+|||+|.++..+++. ..+++++|+|+.+++.+++++. +.+++.+.++|+.+ + ++.++||+|+++.+ +
T Consensus 37 ~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~D~i~~~~~-~-- 110 (183)
T 2yxd_A 37 DVVVDVGCGSGGMTVEIAKR-CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-V-LDKLEFNKAFIGGT-K-- 110 (183)
T ss_dssp CEEEEESCCCSHHHHHHHTT-SSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-H-GGGCCCSEEEECSC-S--
T ss_pred CEEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-c-ccCCCCcEEEECCc-c--
Confidence 49999999999999999984 4599999999999999999974 23578999999987 3 56689999999876 2
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
....+++++.++ |||.+++.+....
T Consensus 111 --------~~~~~l~~~~~~--~gG~l~~~~~~~~ 135 (183)
T 2yxd_A 111 --------NIEKIIEILDKK--KINHIVANTIVLE 135 (183)
T ss_dssp --------CHHHHHHHHHHT--TCCEEEEEESCHH
T ss_pred --------cHHHHHHHHhhC--CCCEEEEEecccc
Confidence 346788888888 9999999885443
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-14 Score=115.31 Aligned_cols=109 Identities=14% Similarity=0.093 Sum_probs=83.8
Q ss_pred CcEEEEccCCchhHHHHHHc--C-CCeEEEEeCCHHHHHHHHHHcCCC---C---C------------------------
Q 026558 49 QRILIVGCGNSAFSEGMVDD--G-YEDVVNVDISSVVIEAMMKKYSNR---P---Q------------------------ 95 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~--~-~~~~~~vD~s~~~~~~a~~~~~~~---~---~------------------------ 95 (237)
.+|||+|||+|.++..+++. . ..+++|+|+|+.+++.|+++.... . .
T Consensus 53 ~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (250)
T 1o9g_A 53 VTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAAR 132 (250)
T ss_dssp EEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhhhh
Confidence 49999999999999999886 2 248999999999999999886432 1 1
Q ss_pred -cE-------------EEEccccccccc----cCCCccEEEeccccceeccC--CCChHHHHHHHHHHHHhcCCCcEEEE
Q 026558 96 -LK-------------YIKMDVRQMDEF----QTGSFDSVVDKGTLDSLLCG--SNSRQNATQMLKEVWRVLKDKGVYIL 155 (237)
Q Consensus 96 -~~-------------~~~~d~~~~~~~----~~~~fD~I~~~~~l~~~~~~--~~~~~~~~~~l~~~~~~L~pgG~l~~ 155 (237)
++ +.++|+.+.... ...+||+|+++.++...... ..+......+++++.++|+|||++++
T Consensus 133 ~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 212 (250)
T 1o9g_A 133 RLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAV 212 (250)
T ss_dssp HHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred hhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEE
Confidence 56 999998875311 34589999999776554100 01246778999999999999999998
Q ss_pred EE
Q 026558 156 VT 157 (237)
Q Consensus 156 ~~ 157 (237)
..
T Consensus 213 ~~ 214 (250)
T 1o9g_A 213 TD 214 (250)
T ss_dssp EE
T ss_pred eC
Confidence 54
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-13 Score=109.86 Aligned_cols=100 Identities=16% Similarity=0.161 Sum_probs=74.7
Q ss_pred CcEEEEccCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc--ccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE--FQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~--~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.+.+......|+.++++|+..... ...++||+|+++.+.
T Consensus 78 ~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~- 156 (232)
T 3id6_C 78 TKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQ- 156 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEECCCC-
T ss_pred CEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEecCCC-
Confidence 49999999999999999875 2 349999999998875544333223689999999986542 124689999998543
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+.....++..+.++|||||++++..
T Consensus 157 --------~~~~~il~~~~~~~LkpGG~lvisi 181 (232)
T 3id6_C 157 --------PDQTDIAIYNAKFFLKVNGDMLLVI 181 (232)
T ss_dssp --------TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --------hhHHHHHHHHHHHhCCCCeEEEEEE
Confidence 1334445566777999999999875
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.9e-14 Score=121.73 Aligned_cols=101 Identities=17% Similarity=0.146 Sum_probs=84.4
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++.+..+++|+|+| .+++.|+++++ +. .+++++++|+.+++ ++ ++||+|++..+.+.
T Consensus 65 ~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~-~~~D~Iv~~~~~~~ 141 (376)
T 3r0q_C 65 KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDIS-LP-EKVDVIISEWMGYF 141 (376)
T ss_dssp CEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCC-CS-SCEEEEEECCCBTT
T ss_pred CEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcC-cC-CcceEEEEcChhhc
Confidence 4999999999999999999986699999999 99999998874 22 35899999999887 54 88999999765554
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
+ ........++..+.++|+|||++++.
T Consensus 142 l----~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 142 L----LRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp B----TTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred c----cchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 4 22345788999999999999999763
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-14 Score=120.64 Aligned_cols=106 Identities=12% Similarity=0.220 Sum_probs=89.5
Q ss_pred CCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEecccc
Q 026558 48 HQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 48 ~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l 123 (237)
..+|||+|||+|.++..+++.. ..+++++|+ +.+++.++++... ..+++++.+|+.+.+.+..+.||+|++..++
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vl 258 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCL 258 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCG
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEeccc
Confidence 3499999999999999999875 349999999 8899999988642 2369999999987653345679999999999
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
|++ +.+....+++++.++|+|||++++.+..
T Consensus 259 h~~-----~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 289 (352)
T 3mcz_A 259 HYF-----DAREAREVIGHAAGLVKPGGALLILTMT 289 (352)
T ss_dssp GGS-----CHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ccC-----CHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 988 5566799999999999999999998753
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-14 Score=115.44 Aligned_cols=99 Identities=14% Similarity=0.159 Sum_probs=81.8
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEcccccccc-ccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDE-FQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~-~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|..+..+++.. ..+++++|+++.+++.|++++. +. ++++++++|+.+... ...++||+|++....
T Consensus 73 ~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~~ 152 (232)
T 3ntv_A 73 KNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDAAK 152 (232)
T ss_dssp CEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEETTS
T ss_pred CEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcCcH
Confidence 499999999999999999853 3599999999999999999884 22 379999999987642 226889999987543
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.....+++.+.++|+|||++++..
T Consensus 153 ----------~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 153 ----------AQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp ----------SSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred ----------HHHHHHHHHHHHhcCCCeEEEEee
Confidence 445779999999999999998843
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-14 Score=113.90 Aligned_cols=101 Identities=12% Similarity=0.149 Sum_probs=80.0
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc--cccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD--EFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~--~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++.. ..+++|+|+|+.+++.+.++.....++.+.++|+.+.. .+..++||+|+++.+
T Consensus 79 ~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~-- 156 (233)
T 2ipx_A 79 AKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVA-- 156 (233)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECCC--
T ss_pred CEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcCC--
Confidence 499999999999999999872 35999999999877776666543368999999998732 145678999999644
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.+.....++.++.++|+|||++++...
T Consensus 157 -------~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 157 -------QPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp -------CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -------CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 124556678999999999999998653
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.3e-14 Score=119.20 Aligned_cols=104 Identities=15% Similarity=0.263 Sum_probs=88.4
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++.. ..+++++|++ .+++.|++++.. ..++++..+|+.+.+ ++. .||+|++..+++
T Consensus 167 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~-~~D~v~~~~~l~ 243 (335)
T 2r3s_A 167 LKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVD-YGN-DYDLVLLPNFLH 243 (335)
T ss_dssp SEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSC-CCS-CEEEEEEESCGG
T ss_pred CEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCC-CCC-CCcEEEEcchhc
Confidence 499999999999999999874 3499999999 999999998632 236999999998765 444 499999999999
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
++ +..+...+++++.++|+|||++++.+...
T Consensus 244 ~~-----~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 274 (335)
T 2r3s_A 244 HF-----DVATCEQLLRKIKTALAVEGKVIVFDFIP 274 (335)
T ss_dssp GS-----CHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred cC-----CHHHHHHHHHHHHHhCCCCcEEEEEeecC
Confidence 88 66677899999999999999999987544
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-14 Score=113.34 Aligned_cols=98 Identities=8% Similarity=0.169 Sum_probs=81.2
Q ss_pred cEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CC--CCcEEEEccccccc-cccCCCccEEEeccc
Q 026558 50 RILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NR--PQLKYIKMDVRQMD-EFQTGSFDSVVDKGT 122 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~--~~~~~~~~d~~~~~-~~~~~~fD~I~~~~~ 122 (237)
+|||+|||+|..+..+++.. ..+++++|+++.+++.|+++++ +. .+++++++|+.+.. .++.++||+|++...
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~~ 138 (221)
T 3dr5_A 59 GAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQVS 138 (221)
T ss_dssp EEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECCC
T ss_pred CEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcCc
Confidence 89999999999999999853 3599999999999999999984 22 37999999997753 234689999998754
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
. .....+++++.++|+|||++++..
T Consensus 139 ~----------~~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 139 P----------MDLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp T----------TTHHHHHHHHHHHEEEEEEEEETT
T ss_pred H----------HHHHHHHHHHHHHcCCCcEEEEeC
Confidence 3 345678999999999999998843
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.5e-14 Score=118.50 Aligned_cols=97 Identities=18% Similarity=0.128 Sum_probs=82.2
Q ss_pred CCcEEEEccCCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEecccc
Q 026558 48 HQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 48 ~~~iLdlG~G~G~~~~~~~~~~~--~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l 123 (237)
+.+|||+|||+|.++..+++.+. .+++++|+|+.+++.|++++. +..++++..+|+.+.. ...++||+|++..++
T Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~-~~~~~fD~Iv~~~~~ 154 (317)
T 1dl5_A 76 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV-PEFSPYDVIFVTVGV 154 (317)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC-GGGCCEEEEEECSBB
T ss_pred cCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcc-ccCCCeEEEEEcCCH
Confidence 34999999999999999998753 359999999999999999874 3457999999998864 346789999999999
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+++ . +++.++|+|||++++...
T Consensus 155 ~~~-------~------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 155 DEV-------P------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp SCC-------C------HHHHHHEEEEEEEEEEBC
T ss_pred HHH-------H------HHHHHhcCCCcEEEEEEC
Confidence 988 2 568899999999998864
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-14 Score=121.62 Aligned_cols=118 Identities=19% Similarity=0.269 Sum_probs=91.1
Q ss_pred HHHHHhhC-CCCCCcEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccccCCC
Q 026558 37 APLIKLYV-PSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 37 ~~~l~~~~-~~~~~~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~ 113 (237)
.+.+...+ .....+|||+|||+|.++..+++.+. .+++++|+|+.+++.+++++.. ...+++..+|+.+.. .++
T Consensus 185 ~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~---~~~ 261 (343)
T 2pjd_A 185 SQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV---KGR 261 (343)
T ss_dssp HHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC---CSC
T ss_pred HHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc---cCC
Confidence 34444444 32334999999999999999998874 4999999999999999998742 234678888887653 678
Q ss_pred ccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 114 fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
||+|+++.++|+... .+......+++++.++|+|||.+++....
T Consensus 262 fD~Iv~~~~~~~g~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 262 FDMIISNPPFHDGMQ--TSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp EEEEEECCCCCSSSH--HHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred eeEEEECCCcccCcc--CCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 999999998875100 02366789999999999999999998743
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-14 Score=115.01 Aligned_cols=102 Identities=10% Similarity=0.028 Sum_probs=83.9
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccc--ccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDE--FQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~--~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|..++.++... ..+++++|+|+.+++.|+++.. +..+++++++|+.+++. ...++||+|++..+
T Consensus 82 ~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a~- 160 (249)
T 3g89_A 82 LRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARAV- 160 (249)
T ss_dssp CEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEESS-
T ss_pred CEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEECCc-
Confidence 499999999999999998764 4599999999999999999874 33479999999988762 12478999999743
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
.+...+++.+.++|+|||++++.....+
T Consensus 161 ----------~~~~~ll~~~~~~LkpgG~l~~~~g~~~ 188 (249)
T 3g89_A 161 ----------APLCVLSELLLPFLEVGGAAVAMKGPRV 188 (249)
T ss_dssp ----------CCHHHHHHHHGGGEEEEEEEEEEECSCC
T ss_pred ----------CCHHHHHHHHHHHcCCCeEEEEEeCCCc
Confidence 3457889999999999999998775443
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-13 Score=113.44 Aligned_cols=102 Identities=16% Similarity=0.184 Sum_probs=82.6
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeC-CHHHHHHHHHHc-----CCC-------CCcEEEEccccccc-cc----c
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDI-SSVVIEAMMKKY-----SNR-------PQLKYIKMDVRQMD-EF----Q 110 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~-s~~~~~~a~~~~-----~~~-------~~~~~~~~d~~~~~-~~----~ 110 (237)
.+|||+|||+|.++..+++.+..+++++|+ |+.+++.|+++. ... .++.+...|..+.. .+ .
T Consensus 81 ~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 160 (281)
T 3bzb_A 81 KTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTG 160 (281)
T ss_dssp CEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHHHS
T ss_pred CeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhhcc
Confidence 399999999999999999887559999999 899999999987 321 36778866655421 12 3
Q ss_pred CCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcC---C--CcEEEEEE
Q 026558 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLK---D--KGVYILVT 157 (237)
Q Consensus 111 ~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~---p--gG~l~~~~ 157 (237)
.++||+|++..++++. .+...+++.+.++|+ | ||++++..
T Consensus 161 ~~~fD~Ii~~dvl~~~-------~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~ 205 (281)
T 3bzb_A 161 LQRFQVVLLADLLSFH-------QAHDALLRSVKMLLALPANDPTAVALVTF 205 (281)
T ss_dssp CSSBSEEEEESCCSCG-------GGHHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred CCCCCEEEEeCcccCh-------HHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 5789999998888877 788999999999999 9 99877754
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=4.9e-14 Score=111.49 Aligned_cols=104 Identities=11% Similarity=0.074 Sum_probs=83.5
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEcccccc-ccccC----CCccEEE
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQM-DEFQT----GSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~-~~~~~----~~fD~I~ 118 (237)
.+|||+|||+|..+..+++.. ..+++++|+++.+++.|++++. +. .+++++++|+.+. +.+.. ++||+|+
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~ 139 (221)
T 3u81_A 60 SLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVF 139 (221)
T ss_dssp SEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEE
T ss_pred CEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEE
Confidence 499999999999999999852 3599999999999999999874 22 3699999999663 32222 6899999
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+....++. .....++..+ ++|+|||++++.....
T Consensus 140 ~d~~~~~~-------~~~~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 140 LDHWKDRY-------LPDTLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp ECSCGGGH-------HHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred EcCCcccc-------hHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence 99877666 5666778877 9999999998866443
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.1e-14 Score=113.44 Aligned_cols=121 Identities=13% Similarity=0.135 Sum_probs=88.7
Q ss_pred HHHhhCCCCC-CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC---CC---CcEEEEccccccc---
Q 026558 39 LIKLYVPSHH-QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN---RP---QLKYIKMDVRQMD--- 107 (237)
Q Consensus 39 ~l~~~~~~~~-~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~---~~---~~~~~~~d~~~~~--- 107 (237)
++...+.... .+|||+|||+|.++..+++.. ..+++++|+++.+++.|++++.. .+ ++.++++|+.+..
T Consensus 27 lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~ 106 (260)
T 2ozv_A 27 LLASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKAR 106 (260)
T ss_dssp HHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHH
T ss_pred HHHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhh
Confidence 3444443322 399999999999999999886 35999999999999999999864 32 5899999998872
Q ss_pred ---cccCCCccEEEeccccceec-----------cCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 108 ---EFQTGSFDSVVDKGTLDSLL-----------CGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 108 ---~~~~~~fD~I~~~~~l~~~~-----------~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
.++.++||+|+++.++.... ...........+++.+.++|+|||++++....
T Consensus 107 ~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 172 (260)
T 2ozv_A 107 VEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP 172 (260)
T ss_dssp HHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred hhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH
Confidence 14578899999997654320 00001123678899999999999999887643
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-14 Score=121.06 Aligned_cols=100 Identities=17% Similarity=0.188 Sum_probs=83.2
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++.+..+++|+|+|+ +++.|+++++ +. .+++++.+|+.+++ ++ ++||+|++..++++
T Consensus 52 ~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~-~~~D~Ivs~~~~~~ 128 (348)
T 2y1w_A 52 KIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS-LP-EQVDIIISEPMGYM 128 (348)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC-CS-SCEEEEEECCCBTT
T ss_pred CEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCC-CC-CceeEEEEeCchhc
Confidence 49999999999999999998766999999996 8888888864 22 57999999999876 43 68999999988776
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
+ ..+.....+.++.++|+|||++++.
T Consensus 129 ~-----~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 129 L-----FNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp B-----TTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred C-----ChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 6 3345667788899999999999853
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-13 Score=116.33 Aligned_cols=103 Identities=17% Similarity=0.238 Sum_probs=87.4
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++.. ..+++++|+ +.+++.|++++. +. .+++++.+|+.+.+ ++. +|+|++..+++
T Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~--~D~v~~~~vlh 267 (359)
T 1x19_A 192 KKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES-YPE--ADAVLFCRILY 267 (359)
T ss_dssp CEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSC-CCC--CSEEEEESCGG
T ss_pred CEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCC-CCC--CCEEEEechhc
Confidence 499999999999999999875 349999999 999999998874 22 35999999998875 443 39999999999
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
++ +.+....+++++.++|+|||++++.+...
T Consensus 268 ~~-----~d~~~~~~l~~~~~~L~pgG~l~i~e~~~ 298 (359)
T 1x19_A 268 SA-----NEQLSTIMCKKAFDAMRSGGRLLILDMVI 298 (359)
T ss_dssp GS-----CHHHHHHHHHHHHTTCCTTCEEEEEEECC
T ss_pred cC-----CHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 88 45568999999999999999998887544
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-13 Score=116.20 Aligned_cols=103 Identities=11% Similarity=0.114 Sum_probs=87.3
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++.. ..+++++|+ +.+++.|++++.. ..++++..+|+.+ + ++. .||+|++..++|
T Consensus 204 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~-~p~-~~D~v~~~~vlh 279 (369)
T 3gwz_A 204 ATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE-T-IPD-GADVYLIKHVLH 279 (369)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT-C-CCS-SCSEEEEESCGG
T ss_pred cEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC-C-CCC-CceEEEhhhhhc
Confidence 499999999999999999875 348999999 9999999998742 3579999999983 2 444 899999999999
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
++ +......+++++.++|+|||++++.+...
T Consensus 280 ~~-----~d~~~~~~L~~~~~~L~pgG~l~i~e~~~ 310 (369)
T 3gwz_A 280 DW-----DDDDVVRILRRIATAMKPDSRLLVIDNLI 310 (369)
T ss_dssp GS-----CHHHHHHHHHHHHTTCCTTCEEEEEEEBC
T ss_pred cC-----CHHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 88 55566689999999999999999987533
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.5e-14 Score=110.49 Aligned_cols=86 Identities=23% Similarity=0.294 Sum_probs=74.1
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~ 128 (237)
.+|||+|||+|.++..++ .+++|+|+|+. ++.+.++|+.+++ +++++||+|++..++| .
T Consensus 69 ~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~-------------~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~-~-- 127 (215)
T 2zfu_A 69 LVVADFGCGDCRLASSIR----NPVHCFDLASL-------------DPRVTVCDMAQVP-LEDESVDVAVFCLSLM-G-- 127 (215)
T ss_dssp SCEEEETCTTCHHHHHCC----SCEEEEESSCS-------------STTEEESCTTSCS-CCTTCEEEEEEESCCC-S--
T ss_pred CeEEEECCcCCHHHHHhh----ccEEEEeCCCC-------------CceEEEeccccCC-CCCCCEeEEEEehhcc-c--
Confidence 499999999999988773 48999999986 4678999998877 7788999999998886 3
Q ss_pred CCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 129 GSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.+...+++++.++|+|||.+++.+...
T Consensus 128 -----~~~~~~l~~~~~~L~~gG~l~i~~~~~ 154 (215)
T 2zfu_A 128 -----TNIRDFLEEANRVLKPGGLLKVAEVSS 154 (215)
T ss_dssp -----SCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred -----cCHHHHHHHHHHhCCCCeEEEEEEcCC
Confidence 567899999999999999999987543
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-14 Score=120.33 Aligned_cols=100 Identities=18% Similarity=0.224 Sum_probs=82.9
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++.+..+++|+|+| .+++.|++++. +. .+++++.+|+.+++ ++.++||+|++..+.+.
T Consensus 40 ~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Ivs~~~~~~ 117 (328)
T 1g6q_1 40 KIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVH-LPFPKVDIIISEWMGYF 117 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSSSCEEEEEECCCBTT
T ss_pred CEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhcc-CCCCcccEEEEeCchhh
Confidence 3999999999999999999876699999999 58999998874 22 46899999999886 66789999999865444
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 154 (237)
+ ........++.++.++|+|||+++
T Consensus 118 l----~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 118 L----LYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp B----STTCCHHHHHHHHHHHEEEEEEEE
T ss_pred c----ccHHHHHHHHHHHHhhcCCCeEEE
Confidence 3 123567789999999999999987
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.1e-14 Score=112.87 Aligned_cols=97 Identities=15% Similarity=0.202 Sum_probs=81.2
Q ss_pred CcEEEEccCCchhHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHcCC-------CCCcEEEEccccccccccCCCccEEEe
Q 026558 49 QRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSN-------RPQLKYIKMDVRQMDEFQTGSFDSVVD 119 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-~~-~~~~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~~~~~~~~~~fD~I~~ 119 (237)
.+|||+|||+|..+..+++. +. .+++++|+++.+++.+++++.. ..++.+.++|+.... ...++||+|++
T Consensus 79 ~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~i~~ 157 (226)
T 1i1n_A 79 AKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY-AEEAPYDAIHV 157 (226)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC-GGGCCEEEEEE
T ss_pred CEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCc-ccCCCcCEEEE
Confidence 49999999999999999886 32 4999999999999999988742 357899999998654 44678999999
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
..+++++ ++++.++|+|||++++....
T Consensus 158 ~~~~~~~-------------~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 158 GAAAPVV-------------PQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp CSBBSSC-------------CHHHHHTEEEEEEEEEEESC
T ss_pred CCchHHH-------------HHHHHHhcCCCcEEEEEEec
Confidence 9887665 36789999999999998754
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.7e-14 Score=112.73 Aligned_cols=118 Identities=14% Similarity=0.097 Sum_probs=79.0
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCC-HHHHHHH---HHHcC--CCCCcEEEEccccccccc
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDIS-SVVIEAM---MKKYS--NRPQLKYIKMDVRQMDEF 109 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s-~~~~~~a---~~~~~--~~~~~~~~~~d~~~~~~~ 109 (237)
..++.....++. +|||||||+|.++..+++.. ...++|+|+| +.+++.| +++.. +.+++.+.++|+.+++..
T Consensus 15 ~~~~~~~~~~~~-~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~ 93 (225)
T 3p2e_A 15 DELTEIIGQFDR-VHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFE 93 (225)
T ss_dssp HHHHHHHTTCSE-EEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGG
T ss_pred HHHHHHhCCCCC-EEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhh
Confidence 344444444444 99999999999999998653 3489999999 6777666 66653 345899999999988621
Q ss_pred cCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 110 QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 110 ~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
....+|.|.++.+..... .........+++++.++|||||++++.+
T Consensus 94 ~~d~v~~i~~~~~~~~~~--~~~~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 94 LKNIADSISILFPWGTLL--EYVIKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp GTTCEEEEEEESCCHHHH--HHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred ccCeEEEEEEeCCCcHHh--hhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence 124555555543321100 0000122468999999999999998833
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=7e-14 Score=119.04 Aligned_cols=113 Identities=17% Similarity=0.157 Sum_probs=89.7
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEccccccccccCC
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDEFQTG 112 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~~~~~ 112 (237)
..++......+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.|++++. +. .+++++.+|+.+. ++.
T Consensus 172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~- 247 (374)
T 1qzz_A 172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP--LPV- 247 (374)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC--CSC-
T ss_pred HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCc--CCC-
Confidence 334443322233499999999999999999885 349999999 999999999873 22 3799999999762 333
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.||+|++..++|++ +......+++++.++|+|||++++.+.
T Consensus 248 ~~D~v~~~~vl~~~-----~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 248 TADVVLLSFVLLNW-----SDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp CEEEEEEESCGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCEEEEeccccCC-----CHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 49999999999988 445556899999999999999998876
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.4e-14 Score=117.24 Aligned_cols=107 Identities=21% Similarity=0.286 Sum_probs=83.2
Q ss_pred CCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC------CCCCcEEEEccccccccc-cCCCccEEE
Q 026558 47 HHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS------NRPQLKYIKMDVRQMDEF-QTGSFDSVV 118 (237)
Q Consensus 47 ~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~------~~~~~~~~~~d~~~~~~~-~~~~fD~I~ 118 (237)
.+.+|||||||+|.++..+++.. ..+++++|+|+.+++.|++++. ..++++++.+|+.+.... ..++||+|+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi 174 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVI 174 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEE
Confidence 33499999999999999999874 4599999999999999999872 236899999999886521 467899999
Q ss_pred eccccceeccCCCChHH--HHHHHHHHHHhcCCCcEEEEEEc
Q 026558 119 DKGTLDSLLCGSNSRQN--ATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~--~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
++.+.... +... ...+++++.++|+|||++++...
T Consensus 175 ~d~~~~~~-----~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 211 (304)
T 3bwc_A 175 IDTTDPAG-----PASKLFGEAFYKDVLRILKPDGICCNQGE 211 (304)
T ss_dssp EECC--------------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ECCCCccc-----cchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 97654332 1111 16899999999999999998764
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-14 Score=129.22 Aligned_cols=112 Identities=13% Similarity=0.200 Sum_probs=88.2
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--CCCcEEEEcccccccc-ccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDE-FQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~-~~~~~fD~I~~~~~l~~ 125 (237)
.+|||||||.|.++..+++.|. +|+|||+|+.+++.|+.+... ..+++|.++++.++.. +.+++||+|+|..+++|
T Consensus 68 ~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~eh 146 (569)
T 4azs_A 68 LNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFHH 146 (569)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCHHH
T ss_pred CeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcchhc
Confidence 4999999999999999999986 999999999999999998743 2478999999988742 45789999999999999
Q ss_pred eccCCCChHHHH--HHHHHHHHhcCCCcEEEEEEcCCchhhhhcc
Q 026558 126 LLCGSNSRQNAT--QMLKEVWRVLKDKGVYILVTYGAPIYRLGML 168 (237)
Q Consensus 126 ~~~~~~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~ 168 (237)
+ .+.. ..+..+++.|+++|..++.......+...++
T Consensus 147 v-------~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e~~~~~~ 184 (569)
T 4azs_A 147 I-------VHLHGIDEVKRLLSRLADVTQAVILELAVKEEPFYWG 184 (569)
T ss_dssp H-------HHHHCHHHHHHHHHHHHHHSSEEEEECCCTTSSSGGG
T ss_pred C-------CCHHHHHHHHHHHHHhccccceeeEEecccccccccc
Confidence 9 4333 3345677778888877776654444433333
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-13 Score=115.07 Aligned_cols=103 Identities=12% Similarity=0.138 Sum_probs=87.4
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++.. ..+++++|+ +.+++.|++++.. .+++++..+|+.+ + ++. +||+|++..++|
T Consensus 171 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~p~-~~D~v~~~~vlh 246 (332)
T 3i53_A 171 GHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-P-LPA-GAGGYVLSAVLH 246 (332)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-C-CCC-SCSEEEEESCGG
T ss_pred CEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-C-CCC-CCcEEEEehhhc
Confidence 499999999999999999875 348999999 9999999988742 2579999999973 2 344 899999999999
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
++ +.+....+++++.++|+|||++++.+...
T Consensus 247 ~~-----~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 277 (332)
T 3i53_A 247 DW-----DDLSAVAILRRCAEAAGSGGVVLVIEAVA 277 (332)
T ss_dssp GS-----CHHHHHHHHHHHHHHHTTTCEEEEEECCC
T ss_pred cC-----CHHHHHHHHHHHHHhcCCCCEEEEEeecC
Confidence 98 55567899999999999999999987544
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-14 Score=112.42 Aligned_cols=110 Identities=15% Similarity=0.191 Sum_probs=80.5
Q ss_pred HHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHc------CCCCCcEEEEccccccccccC
Q 026558 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKY------SNRPQLKYIKMDVRQMDEFQT 111 (237)
Q Consensus 39 ~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~------~~~~~~~~~~~d~~~~~~~~~ 111 (237)
.+.........+|||+|||+|.++..+++.. ..+++|+|+|+.+++.+.++. .+.+++.++++|+.+++ ++.
T Consensus 19 ~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~-~~~ 97 (218)
T 3mq2_A 19 EFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLP-PLS 97 (218)
T ss_dssp HHHHHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCC-SCC
T ss_pred HHHHhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCC-CCC
Confidence 3333333333499999999999999999985 359999999999888643222 23358999999999987 665
Q ss_pred CCccEEEeccccc-----eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 112 GSFDSVVDKGTLD-----SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 112 ~~fD~I~~~~~l~-----~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+. |.|+...... ++ .+...+++++.++|+|||++++..
T Consensus 98 ~~-d~v~~~~~~~~~~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 98 GV-GELHVLMPWGSLLRGVL-------GSSPEMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp CE-EEEEEESCCHHHHHHHH-------TSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred CC-CEEEEEccchhhhhhhh-------ccHHHHHHHHHHHcCCCcEEEEEe
Confidence 65 7777432211 22 233789999999999999999854
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-13 Score=108.57 Aligned_cols=130 Identities=14% Similarity=0.117 Sum_probs=98.9
Q ss_pred HHHhhCCCCCCcEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEccccccccccCCCc
Q 026558 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDEFQTGSF 114 (237)
Q Consensus 39 ~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~~~~~~f 114 (237)
.+...++++. +|||+|||+|.+++.+++.+. .+++++|+++.+++.|++++. +. .++++.++|..+.. .+.+.|
T Consensus 14 ~i~~~v~~g~-~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~-~~~~~~ 91 (230)
T 3lec_A 14 KVANYVPKGA-RLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAF-EEADNI 91 (230)
T ss_dssp HHHTTSCTTE-EEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC-CGGGCC
T ss_pred HHHHhCCCCC-EEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc-cccccc
Confidence 4455666665 999999999999999999874 489999999999999999984 22 36999999998875 334479
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchhhhhcccCCCCceEEEEE
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHV 180 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~w~~~~~~ 180 (237)
|+|+..+.. -.....++....+.|+++|.|+++.......-..++ ...+|.+....
T Consensus 92 D~IviaGmG---------g~lI~~IL~~~~~~l~~~~~lIlqp~~~~~~lr~~L-~~~Gf~i~~E~ 147 (230)
T 3lec_A 92 DTITICGMG---------GRLIADILNNDIDKLQHVKTLVLQPNNREDDLRKWL-AANDFEIVAED 147 (230)
T ss_dssp CEEEEEEEC---------HHHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHH-HHTTEEEEEEE
T ss_pred CEEEEeCCc---------hHHHHHHHHHHHHHhCcCCEEEEECCCChHHHHHHH-HHCCCEEEEEE
Confidence 998865442 355788999999999999999998865544333333 23466655544
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.1e-14 Score=118.67 Aligned_cols=111 Identities=23% Similarity=0.211 Sum_probs=85.5
Q ss_pred CCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC-------CCCcEEEEccccccccccCCCccEEE
Q 026558 47 HHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN-------RPQLKYIKMDVRQMDEFQTGSFDSVV 118 (237)
Q Consensus 47 ~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~~~~~~~~~~fD~I~ 118 (237)
.+.+|||||||+|..+..+++.. ..+++++|+++.+++.|++++.. .++++++.+|+.+......++||+|+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 33599999999999999999874 45999999999999999998731 46899999999875323467899999
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
++.+.+....++........+++++.++|+|||++++..
T Consensus 157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred ECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 986554300000011114789999999999999999875
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-13 Score=117.72 Aligned_cols=113 Identities=8% Similarity=0.040 Sum_probs=84.4
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHc-CCCeEEEEeCCHHHHHHH-------HHHcC--C--CCCcEEEEcccc
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAM-------MKKYS--N--RPQLKYIKMDVR 104 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~-~~~~~~~vD~s~~~~~~a-------~~~~~--~--~~~~~~~~~d~~ 104 (237)
..++.........+|||||||+|.++..+++. +..+++|+|+++.+++.| ++++. + ..+++++++|..
T Consensus 232 ~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~ 311 (433)
T 1u2z_A 232 SDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF 311 (433)
T ss_dssp HHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcc
Confidence 44444433333349999999999999999986 444899999999999988 77653 3 358899887654
Q ss_pred cc-ccc--cCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 105 QM-DEF--QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 105 ~~-~~~--~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.. ..+ ..+.||+|+++.++ +. .+....|+++.++|+|||++++..
T Consensus 312 ~~~~~~~~~~~~FDvIvvn~~l-~~-------~d~~~~L~el~r~LKpGG~lVi~d 359 (433)
T 1u2z_A 312 VDNNRVAELIPQCDVILVNNFL-FD-------EDLNKKVEKILQTAKVGCKIISLK 359 (433)
T ss_dssp TTCHHHHHHGGGCSEEEECCTT-CC-------HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred ccccccccccCCCCEEEEeCcc-cc-------ccHHHHHHHHHHhCCCCeEEEEee
Confidence 21 112 24689999987665 33 567788999999999999998874
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-13 Score=115.56 Aligned_cols=102 Identities=12% Similarity=0.183 Sum_probs=87.4
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|..+..+++.. ..+++++|+ +.+++.|++++.. ..+++++.+|+.+ + ++ ++||+|++..++|
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~-~~~D~v~~~~vl~ 244 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-E-VP-SNGDIYLLSRIIG 244 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-C-CC-SSCSEEEEESCGG
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-C-CC-CCCCEEEEchhcc
Confidence 599999999999999999875 348999999 9999999988642 2479999999987 3 44 6799999999999
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
++ +......+++++.++|+|||++++.+..
T Consensus 245 ~~-----~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 274 (334)
T 2ip2_A 245 DL-----DEAASLRLLGNCREAMAGDGRVVVIERT 274 (334)
T ss_dssp GC-----CHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred CC-----CHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 87 5566679999999999999999998753
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-13 Score=111.17 Aligned_cols=100 Identities=12% Similarity=0.081 Sum_probs=81.5
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEcccccc-cccc-CCCccEEEecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQM-DEFQ-TGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~-~~~~-~~~fD~I~~~~ 121 (237)
.+|||+|||+|..+..+++.. ..+++++|+++.+++.|++++. +. .+++++++|+.+. +.+. .++||+|++..
T Consensus 65 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~ 144 (248)
T 3tfw_A 65 KRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFIDA 144 (248)
T ss_dssp SEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEECS
T ss_pred CEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEECC
Confidence 399999999999999999873 3599999999999999999984 32 3799999999774 3222 34899999875
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.. .....+++++.++|+|||++++...
T Consensus 145 ~~----------~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 145 DK----------PNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp CG----------GGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred ch----------HHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 42 4557799999999999999988653
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-13 Score=109.09 Aligned_cols=100 Identities=15% Similarity=0.220 Sum_probs=81.1
Q ss_pred CcEEEEccCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc--ccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE--FQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~--~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++. + ..+++++|+|+.+++.++++....+++.++++|+.+... ...++||+|+++.+
T Consensus 75 ~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~-- 152 (227)
T 1g8a_A 75 KSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVA-- 152 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC--
T ss_pred CEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECCC--
Confidence 49999999999999999977 3 259999999999999999988765789999999987431 12458999998654
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+.....++.++.++|+|||.+++..
T Consensus 153 -------~~~~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 153 -------QPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp -------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -------CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence 11344566999999999999998874
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=112.01 Aligned_cols=110 Identities=14% Similarity=0.150 Sum_probs=84.2
Q ss_pred CCCcEEEEccCC--chhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHcCCC--CCcEEEEcccccccc-----ccCCCcc
Q 026558 47 HHQRILIVGCGN--SAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDE-----FQTGSFD 115 (237)
Q Consensus 47 ~~~~iLdlG~G~--G~~~~~~~~~--~~~~~~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~-----~~~~~fD 115 (237)
+..+|||||||+ +..+..+++. ...+|+++|.|+.|++.|++++... .++.|+++|+.++.. ...+.||
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 334899999997 4455655543 2359999999999999999998653 368999999988631 1134455
Q ss_pred -----EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 116 -----SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 116 -----~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.|+++.+|||+ ...+....+++++.+.|+|||+|++.+...
T Consensus 158 ~~~p~av~~~avLH~l----~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~ 203 (277)
T 3giw_A 158 LTRPVALTVIAIVHFV----LDEDDAVGIVRRLLEPLPSGSYLAMSIGTA 203 (277)
T ss_dssp TTSCCEEEEESCGGGS----CGGGCHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred cCCcchHHhhhhHhcC----CchhhHHHHHHHHHHhCCCCcEEEEEeccC
Confidence 68899999999 222336889999999999999999987654
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.7e-14 Score=115.39 Aligned_cols=107 Identities=16% Similarity=0.257 Sum_probs=85.1
Q ss_pred CCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC------CCCcEEEEccccccccccCCCccEEEe
Q 026558 47 HHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDEFQTGSFDSVVD 119 (237)
Q Consensus 47 ~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~~~~~~~fD~I~~ 119 (237)
.+.+|||+|||+|..+..+++.. ..+++++|+++.+++.|++++.. .++++++.+|+.+......++||+|++
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 157 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence 33599999999999999999875 45999999999999999999853 368899999998753233678999999
Q ss_pred ccccceeccCCCChHHH--HHHHHHHHHhcCCCcEEEEEEc
Q 026558 120 KGTLDSLLCGSNSRQNA--TQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~--~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+.+.... +.... ..+++.+.++|+|||++++...
T Consensus 158 d~~~~~~-----~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 158 DSSDPIG-----PAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp ECCCTTT-----GGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCCCCCC-----cchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 7543211 11222 6899999999999999998753
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.8e-13 Score=105.38 Aligned_cols=87 Identities=18% Similarity=0.366 Sum_probs=71.7
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~ 128 (237)
.+|||+|||+|.++..+++.+..+++|+|+|+.+++.|+++.. +++++++|+.+++ ++||+|+++.++++.
T Consensus 53 ~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~---~~~~~~~d~~~~~----~~~D~v~~~~p~~~~-- 123 (200)
T 1ne2_A 53 RSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG---GVNFMVADVSEIS----GKYDTWIMNPPFGSV-- 123 (200)
T ss_dssp SEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT---TSEEEECCGGGCC----CCEEEEEECCCC-----
T ss_pred CEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC---CCEEEECcHHHCC----CCeeEEEECCCchhc--
Confidence 4999999999999999998865579999999999999999985 7899999998864 689999999999887
Q ss_pred CCCChHHHHHHHHHHHHhc
Q 026558 129 GSNSRQNATQMLKEVWRVL 147 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L 147 (237)
.......+++++.+++
T Consensus 124 ---~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 124 ---VKHSDRAFIDKAFETS 139 (200)
T ss_dssp -------CHHHHHHHHHHE
T ss_pred ---cCchhHHHHHHHHHhc
Confidence 2223357899999998
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.7e-14 Score=114.72 Aligned_cols=109 Identities=17% Similarity=0.262 Sum_probs=80.7
Q ss_pred hHHHHHhhCCC-CCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEE-EEccccccc--cccC
Q 026558 36 LAPLIKLYVPS-HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKY-IKMDVRQMD--EFQT 111 (237)
Q Consensus 36 ~~~~l~~~~~~-~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~-~~~d~~~~~--~~~~ 111 (237)
+..++..+... ...+|||+|||||.++..+++.+..+|+|+|+|+.|++.+.++. +++.. ...|+..+. .++.
T Consensus 73 l~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~---~rv~~~~~~ni~~l~~~~l~~ 149 (291)
T 3hp7_A 73 LEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD---DRVRSMEQYNFRYAEPVDFTE 149 (291)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC---TTEEEECSCCGGGCCGGGCTT
T ss_pred HHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---cccceecccCceecchhhCCC
Confidence 55666655433 22499999999999999999987669999999999999865542 23322 234444433 1344
Q ss_pred CCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+||+|+++..++++ ..+|.++.++|+|||.+++..
T Consensus 150 ~~fD~v~~d~sf~sl----------~~vL~e~~rvLkpGG~lv~lv 185 (291)
T 3hp7_A 150 GLPSFASIDVSFISL----------NLILPALAKILVDGGQVVALV 185 (291)
T ss_dssp CCCSEEEECCSSSCG----------GGTHHHHHHHSCTTCEEEEEE
T ss_pred CCCCEEEEEeeHhhH----------HHHHHHHHHHcCcCCEEEEEE
Confidence 569999998877655 778999999999999998874
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=7.8e-14 Score=114.64 Aligned_cols=108 Identities=12% Similarity=0.123 Sum_probs=80.9
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCC-CcEEEEccccccccccCCCc---cEEEeccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRP-QLKYIKMDVRQMDEFQTGSF---DSVVDKGT 122 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~-~~~~~~~d~~~~~~~~~~~f---D~I~~~~~ 122 (237)
.+|||+|||+|.++..+++....+++|+|+|+.+++.|+++.. +.. +++++++|+.+.. + ++| |+|+++.+
T Consensus 125 ~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~--~-~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 125 KTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF--K-EKFASIEMILSNPP 201 (284)
T ss_dssp CEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG--G-GGTTTCCEEEECCC
T ss_pred CEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc--c-cccCCCCEEEEcCC
Confidence 3899999999999999988733499999999999999999974 223 4999999998753 2 478 99999865
Q ss_pred cceecc----C--CCCh------HHHHHHHHHHH-HhcCCCcEEEEEEcC
Q 026558 123 LDSLLC----G--SNSR------QNATQMLKEVW-RVLKDKGVYILVTYG 159 (237)
Q Consensus 123 l~~~~~----~--~~~~------~~~~~~l~~~~-~~L~pgG~l~~~~~~ 159 (237)
...... . ..+. .+...+++++. +.|+|||.+++....
T Consensus 202 yi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~ 251 (284)
T 1nv8_A 202 YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE 251 (284)
T ss_dssp CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred CCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 432100 0 0000 11237899999 999999999986543
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-12 Score=102.39 Aligned_cols=95 Identities=17% Similarity=0.314 Sum_probs=77.8
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCC-CcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRP-QLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||+|||+|.++..+++.+..+++|+|+|+.+++.++++..... +++++++|+.+++ ++||+|+++.+++..
T Consensus 51 ~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~----~~~D~v~~~~p~~~~- 125 (207)
T 1wy7_A 51 KVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN----SRVDIVIMNPPFGSQ- 125 (207)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC----CCCSEEEECCCCSSS-
T ss_pred CEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC----CCCCEEEEcCCCccc-
Confidence 4999999999999999999876589999999999999999985322 7899999998874 489999999887765
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEE
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYI 154 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~ 154 (237)
.......+++++.+++ |+.++
T Consensus 126 ----~~~~~~~~l~~~~~~l--~~~~~ 146 (207)
T 1wy7_A 126 ----RKHADRPFLLKAFEIS--DVVYS 146 (207)
T ss_dssp ----STTTTHHHHHHHHHHC--SEEEE
T ss_pred ----cCCchHHHHHHHHHhc--CcEEE
Confidence 2234467888999988 55443
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=115.14 Aligned_cols=106 Identities=17% Similarity=0.322 Sum_probs=84.2
Q ss_pred CCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC------CCCcEEEEccccccccccCCCccEEEec
Q 026558 48 HQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (237)
Q Consensus 48 ~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~~~~~~~fD~I~~~ 120 (237)
+.+|||+|||+|.++..+++.. ..+++++|+|+.+++.|++++.. .++++++++|+.+......++||+|+++
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d 196 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVD 196 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEEC
Confidence 3499999999999999999873 45999999999999999999864 3679999999987532346789999997
Q ss_pred cccceeccCCCChHH--HHHHHHHHHHhcCCCcEEEEEEc
Q 026558 121 GTLDSLLCGSNSRQN--ATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~--~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.. +.. .+... ...+++++.++|+|||++++...
T Consensus 197 ~~-~p~----~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 231 (321)
T 2pt6_A 197 SS-DPI----GPAETLFNQNFYEKIYNALKPNGYCVAQCE 231 (321)
T ss_dssp CC-CSS----SGGGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred Cc-CCC----CcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 53 221 01122 27899999999999999999764
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.7e-14 Score=116.11 Aligned_cols=110 Identities=18% Similarity=0.310 Sum_probs=82.8
Q ss_pred CCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC------CCCcEEEEccccccccccCCCccEEEec
Q 026558 48 HQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (237)
Q Consensus 48 ~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~~~~~~~fD~I~~~ 120 (237)
+.+|||+|||+|.++..+++.. ..+++++|+++.+++.|++++.. .++++++++|+.+......++||+|+++
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d 170 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIID 170 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEc
Confidence 3499999999999999999873 46999999999999999998731 3689999999977532346789999987
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
...... +.........+++++.++|+|||++++.+..
T Consensus 171 ~~~~~~--~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 207 (296)
T 1inl_A 171 STDPTA--GQGGHLFTEEFYQACYDALKEDGVFSAETED 207 (296)
T ss_dssp C------------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred CCCccc--CchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence 442212 0000112378999999999999999997643
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=113.10 Aligned_cols=104 Identities=17% Similarity=0.291 Sum_probs=82.2
Q ss_pred CCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC------------CCCCcEEEEccccccccccCCCcc
Q 026558 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS------------NRPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 48 ~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~------------~~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
+.+|||||||+|.++..+++.+..+++++|+++.+++.|++++. ..++++++.+|+.+.... .++||
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~fD 154 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGFD 154 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCEE
T ss_pred CCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCCee
Confidence 34999999999999999998855699999999999999999871 135789999999775323 67899
Q ss_pred EEEeccccceeccCCCChHH--HHHHHHHHHHhcCCCcEEEEEE
Q 026558 116 SVVDKGTLDSLLCGSNSRQN--ATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~--~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+|+++.+.+.- .... ...+++++.++|+|||++++..
T Consensus 155 ~Ii~d~~~~~~-----~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 155 VIIADSTDPVG-----PAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEECCCCC----------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCCCCCC-----cchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 99997653211 1122 3788999999999999999875
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.8e-14 Score=110.58 Aligned_cols=98 Identities=17% Similarity=0.238 Sum_probs=80.9
Q ss_pred CcEEEEccCCchhHHHHHHcCC------CeEEEEeCCHHHHHHHHHHcCC-------CCCcEEEEcccccccc---ccCC
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY------EDVVNVDISSVVIEAMMKKYSN-------RPQLKYIKMDVRQMDE---FQTG 112 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~------~~~~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~~~~~---~~~~ 112 (237)
.+|||+|||+|.++..+++... .+++++|+++.+++.|++++.. ..++.+..+|+.+... ...+
T Consensus 82 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 161 (227)
T 2pbf_A 82 SRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELG 161 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHHHC
T ss_pred CEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCccCC
Confidence 4999999999999999988753 4999999999999999998742 3579999999987420 2357
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+||+|++...++++ ++++.++|+|||++++....
T Consensus 162 ~fD~I~~~~~~~~~-------------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 162 LFDAIHVGASASEL-------------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp CEEEEEECSBBSSC-------------CHHHHHHEEEEEEEEEEEEE
T ss_pred CcCEEEECCchHHH-------------HHHHHHhcCCCcEEEEEEcc
Confidence 89999999887765 47789999999999988753
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.49 E-value=6.2e-14 Score=114.72 Aligned_cols=109 Identities=17% Similarity=0.221 Sum_probs=84.9
Q ss_pred CCCcEEEEccCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcC------CCCCcEEEEccccccccccCCCccEEEe
Q 026558 47 HHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYS------NRPQLKYIKMDVRQMDEFQTGSFDSVVD 119 (237)
Q Consensus 47 ~~~~iLdlG~G~G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~------~~~~~~~~~~d~~~~~~~~~~~fD~I~~ 119 (237)
.+.+|||||||+|.++..+++. +..+++++|+++.+++.|++++. ..++++++.+|+.+......++||+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 3349999999999999999987 45699999999999999999872 2368999999998743234578999999
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+...... .........+++.+.++|+|||++++...
T Consensus 155 d~~~~~~---~~~~l~~~~~~~~~~~~L~pgG~lv~~~~ 190 (275)
T 1iy9_A 155 DSTEPVG---PAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (275)
T ss_dssp SCSSCCS---CCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred CCCCCCC---cchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 7653221 11111236789999999999999998754
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-13 Score=116.27 Aligned_cols=109 Identities=15% Similarity=0.075 Sum_probs=84.3
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCC--CcEEEEccccccccc---cCCCccEEEecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRP--QLKYIKMDVRQMDEF---QTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~--~~~~~~~d~~~~~~~---~~~~fD~I~~~~ 121 (237)
.+|||+|||+|.++..+++.+. +++++|+|+.+++.|++++. +.. +++++++|+.++... ..++||+|+++.
T Consensus 155 ~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dP 233 (332)
T 2igt_A 155 LKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDP 233 (332)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECC
T ss_pred CcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECC
Confidence 3999999999999999999876 99999999999999999974 222 489999999876411 156899999986
Q ss_pred ccceeccC---CCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 122 TLDSLLCG---SNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 122 ~l~~~~~~---~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+....... .....+...+++.+.++|+|||++++...
T Consensus 234 P~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 234 PKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp CSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 63221000 01125678899999999999999777653
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.2e-14 Score=116.72 Aligned_cols=108 Identities=19% Similarity=0.217 Sum_probs=82.2
Q ss_pred CCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC------CCCcEEEEccccccccccCCCccEEEe
Q 026558 47 HHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDEFQTGSFDSVVD 119 (237)
Q Consensus 47 ~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~~~~~~~fD~I~~ 119 (237)
.+.+|||||||+|.++..+++.. ..+++++|+++.+++.|++++.. .++++++.+|+.+......++||+|++
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~ 174 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 174 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence 33599999999999999999875 45999999999999999998742 468999999998743234678999999
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+...+.. .........+++++.++|+|||++++..
T Consensus 175 d~~~~~~---~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 175 DSSDPMG---PAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp ECC--------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCCC---cchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 7543211 0011234678999999999999999876
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.4e-13 Score=106.62 Aligned_cols=130 Identities=13% Similarity=0.100 Sum_probs=96.1
Q ss_pred HHHhhCCCCCCcEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEccccccccccCCCc
Q 026558 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDEFQTGSF 114 (237)
Q Consensus 39 ~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~~~~~~f 114 (237)
.+...++++. +|||+|||+|.+++.+++.+. .+++++|+++.+++.|+++.. +. .++++..+|..+.. .+...|
T Consensus 8 ~l~~~v~~g~-~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l-~~~~~~ 85 (225)
T 3kr9_A 8 LVASFVSQGA-ILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAF-EETDQV 85 (225)
T ss_dssp HHHTTSCTTE-EEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC-CGGGCC
T ss_pred HHHHhCCCCC-EEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhc-ccCcCC
Confidence 3445566665 999999999999999999873 489999999999999999984 22 36899999996542 112379
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchhhhhcccCCCCceEEEEE
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHV 180 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~w~~~~~~ 180 (237)
|+|+..+. +......+++...+.|+++|++++........-..++ ...+|.+....
T Consensus 86 D~IviaG~---------Gg~~i~~Il~~~~~~L~~~~~lVlq~~~~~~~vr~~L-~~~Gf~i~~e~ 141 (225)
T 3kr9_A 86 SVITIAGM---------GGRLIARILEEGLGKLANVERLILQPNNREDDLRIWL-QDHGFQIVAES 141 (225)
T ss_dssp CEEEEEEE---------CHHHHHHHHHHTGGGCTTCCEEEEEESSCHHHHHHHH-HHTTEEEEEEE
T ss_pred CEEEEcCC---------ChHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHH-HHCCCEEEEEE
Confidence 99987543 2245788999999999999999998765433333333 23466655443
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.8e-14 Score=105.93 Aligned_cols=114 Identities=11% Similarity=0.119 Sum_probs=83.7
Q ss_pred HHHHHhhC-CCCCCcEEEEccCCchhHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc-----
Q 026558 37 APLIKLYV-PSHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE----- 108 (237)
Q Consensus 37 ~~~l~~~~-~~~~~~iLdlG~G~G~~~~~~~~~-~~-~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~----- 108 (237)
..++.... .....+|||+|||+|.++..+++. +. .+++++|+++ +++. .++.+.++|+.+.+.
T Consensus 11 ~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~--------~~~~~~~~d~~~~~~~~~~~ 81 (180)
T 1ej0_A 11 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI--------VGVDFLQGDFRDELVMKALL 81 (180)
T ss_dssp HHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC--------TTEEEEESCTTSHHHHHHHH
T ss_pred HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc--------CcEEEEEcccccchhhhhhh
Confidence 44455443 222249999999999999999987 32 5999999999 6532 578999999987631
Q ss_pred --ccCCCccEEEeccccceeccCCCChHH------HHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 109 --FQTGSFDSVVDKGTLDSLLCGSNSRQN------ATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 109 --~~~~~fD~I~~~~~l~~~~~~~~~~~~------~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
++.++||+|+++.++++.. ...... ...+++++.++|+|||.+++.++..+
T Consensus 82 ~~~~~~~~D~i~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 140 (180)
T 1ej0_A 82 ERVGDSKVQVVMSDMAPNMSG--TPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE 140 (180)
T ss_dssp HHHTTCCEEEEEECCCCCCCS--CHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred ccCCCCceeEEEECCCccccC--CCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence 4567899999998877650 000111 16899999999999999999876554
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-13 Score=116.59 Aligned_cols=97 Identities=23% Similarity=0.295 Sum_probs=82.8
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||||||+|.++..+++.. ..+++++|+ +.+++.+++. ++++++.+|+.+ + ++.+ |+|++..++|++
T Consensus 205 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~-~p~~--D~v~~~~vlh~~- 274 (368)
T 3reo_A 205 TTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF----SGVEHLGGDMFD-G-VPKG--DAIFIKWICHDW- 274 (368)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC----TTEEEEECCTTT-C-CCCC--SEEEEESCGGGB-
T ss_pred CEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc----CCCEEEecCCCC-C-CCCC--CEEEEechhhcC-
Confidence 499999999999999999875 348999999 8888776543 689999999987 4 5544 999999999988
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+.++...+|++++++|+|||++++.+..
T Consensus 275 ----~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 302 (368)
T 3reo_A 275 ----SDEHCLKLLKNCYAALPDHGKVIVAEYI 302 (368)
T ss_dssp ----CHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred ----CHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 5667789999999999999999998754
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.2e-14 Score=119.33 Aligned_cols=107 Identities=19% Similarity=0.296 Sum_probs=82.7
Q ss_pred hHHHHHhhCCCCCCcEEEEccC------CchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCG------NSAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD 107 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G------~G~~~~~~~~~--~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~ 107 (237)
...++.....++ .+||||||| +|..+..+++. ...+++|+|+|+.+. . ..++++++++|+.+++
T Consensus 206 Ye~lL~~l~~~~-~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~-~~~rI~fv~GDa~dlp 277 (419)
T 3sso_A 206 YDRHFRDYRNQQ-VRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V-DELRIRTIQGDQNDAE 277 (419)
T ss_dssp HHHHHGGGTTSC-CEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G-CBTTEEEEECCTTCHH
T ss_pred HHHHHHhhcCCC-CEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h-cCCCcEEEEecccccc
Confidence 344455544444 499999999 77667766654 245999999999973 1 2368999999999876
Q ss_pred ccc------CCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 108 EFQ------TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 108 ~~~------~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+. .++||+|+++.. ++. .+....|++++++|||||++++.+..
T Consensus 278 -f~~~l~~~d~sFDlVisdgs-H~~-------~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 278 -FLDRIARRYGPFDIVIDDGS-HIN-------AHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp -HHHHHHHHHCCEEEEEECSC-CCH-------HHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred -hhhhhhcccCCccEEEECCc-ccc-------hhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 54 689999999754 555 78889999999999999999998754
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-13 Score=115.72 Aligned_cols=102 Identities=12% Similarity=0.200 Sum_probs=85.9
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC--C-CCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN--R-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~--~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++.. ..+++++|+ +.+++.|++++.. . .+++++.+|+.+. ++. .||+|++..++|
T Consensus 185 ~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~-~~D~v~~~~vl~ 260 (360)
T 1tw3_A 185 RHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP--LPR-KADAIILSFVLL 260 (360)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC--CSS-CEEEEEEESCGG
T ss_pred cEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCC--CCC-CccEEEEccccc
Confidence 499999999999999999876 348999999 9999999988732 2 3799999999763 333 499999999999
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
++ +......+++++.++|+|||++++.+..
T Consensus 261 ~~-----~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 261 NW-----PDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp GS-----CHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CC-----CHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 88 4555678999999999999999998765
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.48 E-value=5.4e-14 Score=114.98 Aligned_cols=98 Identities=14% Similarity=0.212 Sum_probs=82.1
Q ss_pred CcEEEEccCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-~-~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|.++..+++. + ..+++++|+++.+++.|++++.. ..++++.++|+.+. +++++||+|+++
T Consensus 112 ~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~--~~~~~fD~Vi~~--- 186 (275)
T 1yb2_A 112 MDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF--ISDQMYDAVIAD--- 186 (275)
T ss_dssp CEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC--CCSCCEEEEEEC---
T ss_pred CEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhcc--CcCCCccEEEEc---
Confidence 49999999999999999987 2 35999999999999999999743 35799999999873 567889999983
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+ .+...+++++.++|+|||++++.+...
T Consensus 187 --~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~ 214 (275)
T 1yb2_A 187 --I-------PDPWNHVQKIASMMKPGSVATFYLPNF 214 (275)
T ss_dssp --C-------SCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred --C-------cCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 2 233578999999999999999988544
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-13 Score=107.90 Aligned_cols=100 Identities=13% Similarity=0.026 Sum_probs=80.8
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEccccccc-ccc---CCCccEEEe
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMD-EFQ---TGSFDSVVD 119 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~-~~~---~~~fD~I~~ 119 (237)
.+|||+|||+|..+..+++.. ..+++++|+++.+++.|++++. +. .+++++++|+.+.. .+. .++||+|++
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~ 139 (223)
T 3duw_A 60 RNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFI 139 (223)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEE
T ss_pred CEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEE
Confidence 399999999999999999873 3499999999999999999874 32 35999999997642 121 267999998
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.... .....+++++.++|+|||++++...
T Consensus 140 d~~~----------~~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 140 DADK----------QNNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp CSCG----------GGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred cCCc----------HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 7653 4557899999999999998887643
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-13 Score=115.69 Aligned_cols=97 Identities=24% Similarity=0.294 Sum_probs=83.1
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||||||+|.++..+++.. ..+++++|+ +.+++.+++. ++++++.+|+.+ + ++.+ |+|++..++|++
T Consensus 203 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~-~p~~--D~v~~~~vlh~~- 272 (364)
T 3p9c_A 203 GTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF----PGVTHVGGDMFK-E-VPSG--DTILMKWILHDW- 272 (364)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC----TTEEEEECCTTT-C-CCCC--SEEEEESCGGGS-
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc----CCeEEEeCCcCC-C-CCCC--CEEEehHHhccC-
Confidence 499999999999999999875 348999999 8888776543 689999999987 4 5544 999999999988
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+.++...+|++++++|+|||++++.+..
T Consensus 273 ----~d~~~~~~L~~~~~~L~pgG~l~i~e~~ 300 (364)
T 3p9c_A 273 ----SDQHCATLLKNCYDALPAHGKVVLVQCI 300 (364)
T ss_dssp ----CHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred ----CHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 6677889999999999999999998754
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.9e-13 Score=106.74 Aligned_cols=129 Identities=15% Similarity=0.091 Sum_probs=96.9
Q ss_pred HHHHhhCCCCCCcEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEccccccccccCCC
Q 026558 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 38 ~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~~~~~~ 113 (237)
+.+...++++. +|||+|||+|.+++.+++.+. .+++++|+++.+++.|++++. +. .++++.++|..+.. .+..+
T Consensus 13 ~~i~~~v~~g~-~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~-~~~~~ 90 (244)
T 3gnl_A 13 EKVASYITKNE-RIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVI-EKKDA 90 (244)
T ss_dssp HHHHTTCCSSE-EEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC-CGGGC
T ss_pred HHHHHhCCCCC-EEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhcc-Ccccc
Confidence 34555666665 999999999999999999874 489999999999999999984 22 35899999998875 33346
Q ss_pred ccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchhhhhcccCCCCceEEE
Q 026558 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKL 178 (237)
Q Consensus 114 fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~w~~~~ 178 (237)
||+|++.+. +......++.+..+.|+++|.++++.......-..++ ...+|.+..
T Consensus 91 ~D~Iviagm---------Gg~lI~~IL~~~~~~L~~~~~lIlq~~~~~~~lr~~L-~~~Gf~i~~ 145 (244)
T 3gnl_A 91 IDTIVIAGM---------GGTLIRTILEEGAAKLAGVTKLILQPNIAAWQLREWS-EQNNWLITS 145 (244)
T ss_dssp CCEEEEEEE---------CHHHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHH-HHHTEEEEE
T ss_pred ccEEEEeCC---------chHHHHHHHHHHHHHhCCCCEEEEEcCCChHHHHHHH-HHCCCEEEE
Confidence 999987543 3356788999999999999999998865543333333 123565533
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.4e-14 Score=122.57 Aligned_cols=99 Identities=17% Similarity=0.190 Sum_probs=82.4
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++.+..+++|+|+|+ +++.|++++. +. .+++++.+|+.+++ ++ ++||+|+++.++++
T Consensus 160 ~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~-~~-~~fD~Ivs~~~~~~ 236 (480)
T 3b3j_A 160 KIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS-LP-EQVDIIISEPMGYM 236 (480)
T ss_dssp CEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCC-CS-SCEEEEECCCCHHH
T ss_pred CEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCc-cC-CCeEEEEEeCchHh
Confidence 49999999999999999988766999999998 9999998874 22 57999999998875 43 68999999877666
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 155 (237)
+ ..+.....+.++.++|+|||++++
T Consensus 237 ~-----~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 237 L-----FNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp H-----TCHHHHHHHHHGGGGEEEEEEEES
T ss_pred c-----CcHHHHHHHHHHHHhcCCCCEEEE
Confidence 5 335566677889999999999985
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.8e-14 Score=111.94 Aligned_cols=99 Identities=11% Similarity=0.145 Sum_probs=83.1
Q ss_pred CcEEEEccCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHcC---CCCCcEEEEccccccccccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYS---NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-~-~~~~~~vD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|.++..+++. + ..+++++|+++.+++.|++++. +..++.+..+|+.+.+ +++++||+|+++.
T Consensus 98 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~-~~~~~~D~v~~~~-- 174 (258)
T 2pwy_A 98 MRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAE-LEEAAYDGVALDL-- 174 (258)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCC-CCTTCEEEEEEES--
T ss_pred CEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcC-CCCCCcCEEEECC--
Confidence 49999999999999999987 4 3599999999999999999873 2368999999998875 6678899999842
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.+...+++++.++|+|||++++.....
T Consensus 175 ----------~~~~~~l~~~~~~L~~gG~l~~~~~~~ 201 (258)
T 2pwy_A 175 ----------MEPWKVLEKAALALKPDRFLVAYLPNI 201 (258)
T ss_dssp ----------SCGGGGHHHHHHHEEEEEEEEEEESCH
T ss_pred ----------cCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 233578999999999999999988544
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=118.22 Aligned_cols=123 Identities=14% Similarity=0.089 Sum_probs=89.0
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccccCCCc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSF 114 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~f 114 (237)
.+.++.....++. +|||+|||+|.++..+++.+. .|+++|+|+.+++.|++++.. ....++.++|+.+......+.|
T Consensus 204 ~r~~l~~~~~~g~-~VLDlg~GtG~~sl~~a~~ga-~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~f 281 (393)
T 4dmg_A 204 NRRLFEAMVRPGE-RVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPF 281 (393)
T ss_dssp HHHHHHTTCCTTC-EEEEESCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCE
T ss_pred HHHHHHHHhcCCC-eEEEcccchhHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCC
Confidence 3555665555454 999999999999999999876 599999999999999999742 1234677999987532223449
Q ss_pred cEEEeccccceeccC--CCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 115 DSVVDKGTLDSLLCG--SNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 115 D~I~~~~~l~~~~~~--~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
|+|+++.+...-... .........++..+.++|+|||++++.+...
T Consensus 282 D~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~ 329 (393)
T 4dmg_A 282 HHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY 329 (393)
T ss_dssp EEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 999998654111000 0012456789999999999999999877644
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=115.75 Aligned_cols=107 Identities=16% Similarity=0.278 Sum_probs=83.3
Q ss_pred CCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC------CCCcEEEEccccccc-cccCCCccEEEe
Q 026558 48 HQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMD-EFQTGSFDSVVD 119 (237)
Q Consensus 48 ~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~-~~~~~~fD~I~~ 119 (237)
+.+|||||||+|.++..+++.. ..+++++|+|+.+++.|++++.. .++++++++|+.+.. ..+.++||+|++
T Consensus 121 ~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~ 200 (334)
T 1xj5_A 121 PKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIV 200 (334)
T ss_dssp CCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEE
T ss_pred CCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEEE
Confidence 3499999999999999999874 35999999999999999998742 358999999998752 234578999999
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+...... .........+++++.++|+|||++++..
T Consensus 201 d~~~p~~---~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 201 DSSDPIG---PAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp CCCCTTS---GGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCccC---cchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 7542110 0011124789999999999999999863
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=113.99 Aligned_cols=106 Identities=19% Similarity=0.334 Sum_probs=81.0
Q ss_pred CCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC------CCCcEEEEccccccccccCCCccEEEe
Q 026558 47 HHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDEFQTGSFDSVVD 119 (237)
Q Consensus 47 ~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~~~~~~~fD~I~~ 119 (237)
.+.+|||||||+|..+..+++.. ..+++++|+++.+++.|++++.. .++++++.+|+.+......++||+|++
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 33499999999999999999874 45999999999999999999853 357899999998743234678999999
Q ss_pred ccccceeccCCCChHH--HHHHHHHHHHhcCCCcEEEEEE
Q 026558 120 KGTLDSLLCGSNSRQN--ATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~--~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+.. ++. .+... ...+++++.++|+|||++++..
T Consensus 188 d~~-~~~----~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 188 DSS-DPV----GPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CCC------------------HHHHHHHHEEEEEEEEEEC
T ss_pred cCC-CCC----CcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 754 222 01111 2789999999999999999875
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-13 Score=110.73 Aligned_cols=111 Identities=14% Similarity=0.172 Sum_probs=84.7
Q ss_pred CcEEEEccCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccc---cCCCccEEEecc
Q 026558 49 QRILIVGCGNSAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEF---QTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~--~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~---~~~~fD~I~~~~ 121 (237)
.+|||+|||+|..+..+++. +..+++++|+++.+++.+++++. +..++.++++|+.+++.. ..++||+|+++.
T Consensus 85 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~ 164 (274)
T 3ajd_A 85 DFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDA 164 (274)
T ss_dssp CEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEcC
Confidence 49999999999999999884 33599999999999999999874 335899999999887521 267899999985
Q ss_pred ccceeccCC-----------CChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 122 TLDSLLCGS-----------NSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 122 ~l~~~~~~~-----------~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
++.....-. .-......+++++.++|+|||++++.+.+
T Consensus 165 Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs 213 (274)
T 3ajd_A 165 PCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCS 213 (274)
T ss_dssp CCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence 543210000 00134578999999999999999998754
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.1e-13 Score=111.43 Aligned_cols=99 Identities=15% Similarity=0.158 Sum_probs=83.2
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++.+ ..+++++|+++.+++.|+++++ +..++.++++|+.+.+ . .++||+|+++.+.
T Consensus 121 ~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~-~-~~~~D~Vi~d~p~-- 196 (272)
T 3a27_A 121 EVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVE-L-KDVADRVIMGYVH-- 196 (272)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCC-C-TTCEEEEEECCCS--
T ss_pred CEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcC-c-cCCceEEEECCcc--
Confidence 399999999999999999884 4599999999999999999874 3357899999998874 4 6789999998653
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
....++..+.+.|+|||++++.+...
T Consensus 197 ---------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 197 ---------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp ---------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ---------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 23557889999999999999877644
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-13 Score=109.00 Aligned_cols=100 Identities=9% Similarity=0.088 Sum_probs=81.2
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEccccccc-cccC----CCccEEE
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMD-EFQT----GSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~-~~~~----~~fD~I~ 118 (237)
.+|||+|||+|..+..+++.. ..+++++|+++.+++.|++++. +. .+++++++|+.+.. .+.. ++||+|+
T Consensus 66 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~ 145 (225)
T 3tr6_A 66 KKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIY 145 (225)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEE
T ss_pred CEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEE
Confidence 399999999999999999872 3599999999999999999984 22 35999999996642 1222 7899999
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+.... .....+++++.++|+|||++++...
T Consensus 146 ~~~~~----------~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 146 IDADK----------ANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp ECSCG----------GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred ECCCH----------HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 76542 4567899999999999999988653
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.7e-13 Score=103.99 Aligned_cols=114 Identities=15% Similarity=0.314 Sum_probs=80.6
Q ss_pred hHHHHHhh--CCCCCCcEEEEccCCchhHHHHHHcC---CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc---
Q 026558 36 LAPLIKLY--VPSHHQRILIVGCGNSAFSEGMVDDG---YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD--- 107 (237)
Q Consensus 36 ~~~~l~~~--~~~~~~~iLdlG~G~G~~~~~~~~~~---~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~--- 107 (237)
+.+++... +.++ .+|||+|||+|.++..+++.. ..+++|+|+|+.. ..+++.++++|+.+.+
T Consensus 10 l~~~~~~~~~~~~~-~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------~~~~v~~~~~d~~~~~~~~ 79 (201)
T 2plw_A 10 LIELDNKYLFLKKN-KIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------PIPNVYFIQGEIGKDNMNN 79 (201)
T ss_dssp HHHHHHHHCCCCTT-EEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------CCTTCEEEECCTTTTSSCC
T ss_pred HHHHHHHcCCCCCC-CEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------CCCCceEEEccccchhhhh
Confidence 34444443 2334 399999999999999999874 2599999999831 1257899999997754
Q ss_pred ---------------------cccCCCccEEEeccccceeccCCCChHH------HHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 108 ---------------------EFQTGSFDSVVDKGTLDSLLCGSNSRQN------ATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 108 ---------------------~~~~~~fD~I~~~~~l~~~~~~~~~~~~------~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.++.++||+|+++..+++. +....+. ...+++++.++|+|||.+++..+..
T Consensus 80 ~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~--g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 157 (201)
T 2plw_A 80 IKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCI--GNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG 157 (201)
T ss_dssp C-----------CHHHHHHHHHHTTCCEEEEEECCCCCCC--SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred hccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCC--CCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC
Confidence 1356789999998876653 0000111 2348899999999999999877654
Q ss_pred c
Q 026558 161 P 161 (237)
Q Consensus 161 ~ 161 (237)
.
T Consensus 158 ~ 158 (201)
T 2plw_A 158 S 158 (201)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.46 E-value=4.4e-13 Score=111.74 Aligned_cols=110 Identities=9% Similarity=0.039 Sum_probs=84.7
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|..+..+++.. ..+++++|+|+.+++.+++++. +..++.++++|+.+++ ...++||+|+++.+..
T Consensus 120 ~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~-~~~~~fD~Il~d~Pcs 198 (315)
T 1ixk_A 120 EIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIG-ELNVEFDKILLDAPCT 198 (315)
T ss_dssp CEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGG-GGCCCEEEEEEECCTT
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcc-cccccCCEEEEeCCCC
Confidence 499999999999999999863 3589999999999999999974 3457899999998876 3456899999975432
Q ss_pred eec---cCC-----CCh-------HHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 125 SLL---CGS-----NSR-------QNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 125 ~~~---~~~-----~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
... ..+ .+. ..+..+++++.++|+|||++++.+.+
T Consensus 199 g~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 199 GSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp STTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 110 000 011 12368999999999999999998754
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.6e-13 Score=112.48 Aligned_cols=108 Identities=16% Similarity=0.215 Sum_probs=85.2
Q ss_pred cEEEEccCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCC--CCCcEEEEccccccc-cccCCCccEEEeccccce
Q 026558 50 RILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMD-EFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~-~~~~~~fD~I~~~~~l~~ 125 (237)
+|||||||+|.++..+++. ...+++++|+++.+++.|++++.. .++++++++|+.++. .++.++||+|+++...+.
T Consensus 92 rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~~ 171 (317)
T 3gjy_A 92 RITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAGA 171 (317)
T ss_dssp EEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTTS
T ss_pred EEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCcc
Confidence 8999999999999999984 334999999999999999999853 468999999998763 234678999999754332
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
. .........+++.+.++|+|||++++.....
T Consensus 172 ~---~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~ 203 (317)
T 3gjy_A 172 I---TPQNFTTVEFFEHCHRGLAPGGLYVANCGDH 203 (317)
T ss_dssp C---CCGGGSBHHHHHHHHHHEEEEEEEEEEEEEC
T ss_pred c---cchhhhHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 1 0111223789999999999999999877533
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.8e-14 Score=111.47 Aligned_cols=99 Identities=14% Similarity=0.121 Sum_probs=81.9
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEcccccccccc--CCCccEEEeccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDEFQ--TGSFDSVVDKGT 122 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~~~--~~~fD~I~~~~~ 122 (237)
.+|||+|||+|..+..+++.. ..+++++|+++.+++.|++++. +. .++.+..+|+.+..... .++||+|++...
T Consensus 56 ~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~ 135 (233)
T 2gpy_A 56 ARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDAA 135 (233)
T ss_dssp SEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEGG
T ss_pred CEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEECCC
Confidence 399999999999999999874 3599999999999999999874 22 36899999998752122 578999998765
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+ ....+++.+.++|+|||++++.+
T Consensus 136 ~~----------~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 136 KG----------QYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp GS----------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred HH----------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 43 45789999999999999998864
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-13 Score=111.09 Aligned_cols=99 Identities=20% Similarity=0.287 Sum_probs=82.5
Q ss_pred CcEEEEccCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHcCC-----CCCcEEEEccccccccccCCCccEEEecc
Q 026558 49 QRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSN-----RPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-~-~~~~~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~d~~~~~~~~~~~fD~I~~~~ 121 (237)
.+|||+|||+|.++..+++. + ..+++++|+++.+++.|++++.. ..++.+..+|+.+.+ ++.++||+|+++.
T Consensus 101 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~-~~~~~~D~v~~~~ 179 (280)
T 1i9g_A 101 ARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE-LPDGSVDRAVLDM 179 (280)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC-CCTTCEEEEEEES
T ss_pred CEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC-CCCCceeEEEECC
Confidence 49999999999999999985 3 35999999999999999998732 358999999998876 6678899999842
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.+...+++++.++|+|||++++.+...
T Consensus 180 ------------~~~~~~l~~~~~~L~pgG~l~~~~~~~ 206 (280)
T 1i9g_A 180 ------------LAPWEVLDAVSRLLVAGGVLMVYVATV 206 (280)
T ss_dssp ------------SCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred ------------cCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 233478999999999999999987543
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.45 E-value=9.8e-14 Score=110.17 Aligned_cols=96 Identities=16% Similarity=0.186 Sum_probs=80.0
Q ss_pred CcEEEEccCCchhHHHHHHcCC-------CeEEEEeCCHHHHHHHHHHcCC-------CCCcEEEEccccccccccC-CC
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY-------EDVVNVDISSVVIEAMMKKYSN-------RPQLKYIKMDVRQMDEFQT-GS 113 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~-------~~~~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~~~~~~~~-~~ 113 (237)
.+|||+|||+|.++..+++... .+++++|+++.+++.|++++.. ..++.+..+|+.+. ++. ++
T Consensus 86 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~ 163 (227)
T 1r18_A 86 ARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKG--YPPNAP 163 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGC--CGGGCS
T ss_pred CEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccC--CCcCCC
Confidence 4999999999999999987531 4899999999999999988642 35789999999873 333 78
Q ss_pred ccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 114 fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
||+|++...++++ ++++.++|+|||++++....
T Consensus 164 fD~I~~~~~~~~~-------------~~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 164 YNAIHVGAAAPDT-------------PTELINQLASGGRLIVPVGP 196 (227)
T ss_dssp EEEEEECSCBSSC-------------CHHHHHTEEEEEEEEEEESC
T ss_pred ccEEEECCchHHH-------------HHHHHHHhcCCCEEEEEEec
Confidence 9999999888776 26789999999999988753
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.6e-13 Score=116.53 Aligned_cols=123 Identities=17% Similarity=0.144 Sum_probs=91.9
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCC-CcEEEEcccccccc-c--c
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRP-QLKYIKMDVRQMDE-F--Q 110 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~-~~~~~~~d~~~~~~-~--~ 110 (237)
..++.....++. +|||+|||+|.++..+++.+..+++++|+|+.+++.|++++. +.. +++++++|+.+... + .
T Consensus 208 ~~~~~~~~~~~~-~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~ 286 (396)
T 2as0_A 208 RLALEKWVQPGD-RVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKK 286 (396)
T ss_dssp HHHHGGGCCTTC-EEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHT
T ss_pred HHHHHHHhhCCC-eEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhh
Confidence 445555543444 999999999999999999865699999999999999999984 223 78999999987641 1 2
Q ss_pred CCCccEEEeccccceeccC--CCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 111 TGSFDSVVDKGTLDSLLCG--SNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 111 ~~~fD~I~~~~~l~~~~~~--~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.++||+|+++.+....... .........++.++.++|+|||.+++.+...
T Consensus 287 ~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 287 GEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp TCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 5689999998654221000 0001456789999999999999999887644
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.45 E-value=5e-13 Score=103.48 Aligned_cols=114 Identities=16% Similarity=0.309 Sum_probs=81.5
Q ss_pred hHHHHHhh--CCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc-----
Q 026558 36 LAPLIKLY--VPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE----- 108 (237)
Q Consensus 36 ~~~~l~~~--~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~----- 108 (237)
+.+++... +.++ .+|||+|||+|.++..+++.+ .+++|+|+++.. ..+++.++++|+.+...
T Consensus 13 L~ei~~~~~~~~~g-~~VLDlG~G~G~~s~~la~~~-~~V~gvD~~~~~---------~~~~v~~~~~D~~~~~~~~~~~ 81 (191)
T 3dou_A 13 LEFLLDRYRVVRKG-DAVIEIGSSPGGWTQVLNSLA-RKIISIDLQEME---------EIAGVRFIRCDIFKETIFDDID 81 (191)
T ss_dssp HHHHHHHHCCSCTT-CEEEEESCTTCHHHHHHTTTC-SEEEEEESSCCC---------CCTTCEEEECCTTSSSHHHHHH
T ss_pred HHHHHHHcCCCCCC-CEEEEEeecCCHHHHHHHHcC-CcEEEEeccccc---------cCCCeEEEEccccCHHHHHHHH
Confidence 34444444 2334 499999999999999999984 599999999741 23589999999987541
Q ss_pred --cc---CCCccEEEeccccceeccCC------CChHHHHHHHHHHHHhcCCCcEEEEEEcCCch
Q 026558 109 --FQ---TGSFDSVVDKGTLDSLLCGS------NSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (237)
Q Consensus 109 --~~---~~~fD~I~~~~~l~~~~~~~------~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 162 (237)
+. .++||+|+++...... +. ........+++.+.++|+|||.+++..+..+.
T Consensus 82 ~~~~~~~~~~~D~Vlsd~~~~~~--g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~ 144 (191)
T 3dou_A 82 RALREEGIEKVDDVVSDAMAKVS--GIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM 144 (191)
T ss_dssp HHHHHHTCSSEEEEEECCCCCCC--SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH
T ss_pred HHhhcccCCcceEEecCCCcCCC--CCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC
Confidence 11 1489999998654322 10 01123457889999999999999998876654
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.45 E-value=5.1e-13 Score=107.70 Aligned_cols=97 Identities=15% Similarity=0.182 Sum_probs=80.9
Q ss_pred CcEEEEccCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHcC--CCC-CcEEEEccccccccccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYS--NRP-QLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-~-~~~~~~vD~s~~~~~~a~~~~~--~~~-~~~~~~~d~~~~~~~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|.++..+++. + ..+++++|+++.+++.|+++++ +.. ++++.++|+.+. ++.++||+|+++.
T Consensus 95 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D~v~~~~-- 170 (255)
T 3mb5_A 95 DFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG--IEEENVDHVILDL-- 170 (255)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC--CCCCSEEEEEECS--
T ss_pred CEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc--cCCCCcCEEEECC--
Confidence 49999999999999999988 4 4599999999999999999974 223 489999999865 5677899999853
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
.+...+++++.++|+|||++++....
T Consensus 171 ----------~~~~~~l~~~~~~L~~gG~l~~~~~~ 196 (255)
T 3mb5_A 171 ----------PQPERVVEHAAKALKPGGFFVAYTPC 196 (255)
T ss_dssp ----------SCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred ----------CCHHHHHHHHHHHcCCCCEEEEEECC
Confidence 23356899999999999999987643
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-13 Score=116.04 Aligned_cols=96 Identities=19% Similarity=0.246 Sum_probs=81.3
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++. ++++++.+|+.+ + ++. ||+|++..++|++
T Consensus 211 ~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~-~~~--~D~v~~~~~lh~~- 280 (372)
T 1fp1_D 211 STLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL----SGIEHVGGDMFA-S-VPQ--GDAMILKAVCHNW- 280 (372)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC----TTEEEEECCTTT-C-CCC--EEEEEEESSGGGS-
T ss_pred CEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc----CCCEEEeCCccc-C-CCC--CCEEEEecccccC-
Confidence 499999999999999999886 348899999 9998877652 579999999987 4 443 9999999999998
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+......+|+++.++|+|||++++.+.
T Consensus 281 ----~d~~~~~~l~~~~~~L~pgG~l~i~e~ 307 (372)
T 1fp1_D 281 ----SDEKCIEFLSNCHKALSPNGKVIIVEF 307 (372)
T ss_dssp ----CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ----CHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 444455999999999999999998764
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-13 Score=108.41 Aligned_cols=98 Identities=17% Similarity=0.126 Sum_probs=79.4
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|..+..+++.. ..+++++|+|+.+++.|++++.. ..+++++++|+.+......+ ||+|+++...
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~~ 136 (210)
T 3c3p_A 58 QLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDCDV 136 (210)
T ss_dssp SEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEETTT
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcCCh
Confidence 399999999999999998873 35999999999999999988742 13689999999765213345 9999987432
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+...+++++.++|+|||++++..
T Consensus 137 ----------~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 137 ----------FNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp ----------SCHHHHHHHHGGGEEEEEEEEEES
T ss_pred ----------hhhHHHHHHHHHhcCCCeEEEEEC
Confidence 455789999999999999998754
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-13 Score=108.47 Aligned_cols=96 Identities=13% Similarity=0.143 Sum_probs=77.3
Q ss_pred CcEEEEccCCchhHHHHHHc----C-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccc---ccccCCCccEEEec
Q 026558 49 QRILIVGCGNSAFSEGMVDD----G-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM---DEFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~----~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~---~~~~~~~fD~I~~~ 120 (237)
.+|||||||+|..+..+++. + ..+|+++|+|+.+++.|+.. ..+++++++|+.+. +.....+||+|++.
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~---~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d 159 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD---MENITLHQGDCSDLTTFEHLREMAHPLIFID 159 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG---CTTEEEEECCSSCSGGGGGGSSSCSSEEEEE
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhcc---CCceEEEECcchhHHHHHhhccCCCCEEEEC
Confidence 39999999999999999886 2 35999999999999888732 25899999999884 42333479999986
Q ss_pred cccceeccCCCChHHHHHHHHHHHH-hcCCCcEEEEEE
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWR-VLKDKGVYILVT 157 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~-~L~pgG~l~~~~ 157 (237)
.. | .+...++.++.+ +|+|||++++..
T Consensus 160 ~~--~--------~~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 160 NA--H--------ANTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp SS--C--------SSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred Cc--h--------HhHHHHHHHHHHhhCCCCCEEEEEe
Confidence 54 2 245678999997 999999999865
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4e-13 Score=114.97 Aligned_cols=123 Identities=13% Similarity=0.090 Sum_probs=91.5
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCC--CcEEEEccccccc-cc--
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRP--QLKYIKMDVRQMD-EF-- 109 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~--~~~~~~~d~~~~~-~~-- 109 (237)
..++...+.++ .+|||+|||+|.++..+++.+..+++++|+|+.+++.|+++++ +.. +++++++|+.+.. ..
T Consensus 203 ~~~~~~~~~~~-~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~ 281 (385)
T 2b78_A 203 RNELINGSAAG-KTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARR 281 (385)
T ss_dssp HHHHHHTTTBT-CEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHH
Confidence 34555443334 3999999999999999998775599999999999999999984 323 7899999997743 11
Q ss_pred cCCCccEEEecccccee--ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 110 QTGSFDSVVDKGTLDSL--LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 110 ~~~~fD~I~~~~~l~~~--~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
...+||+|+++.+.... ............++..+.++|+|||++++.+...
T Consensus 282 ~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 282 HHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp TTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred hCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 24589999998665210 0011223566778999999999999999887654
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.44 E-value=5.4e-13 Score=112.09 Aligned_cols=100 Identities=18% Similarity=0.268 Sum_probs=77.6
Q ss_pred CcEEEEccCCchhHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHcCC-------------CCCcEEEEccccccc-cccCC
Q 026558 49 QRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSN-------------RPQLKYIKMDVRQMD-EFQTG 112 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-~~-~~~~~vD~s~~~~~~a~~~~~~-------------~~~~~~~~~d~~~~~-~~~~~ 112 (237)
.+|||+|||+|.++..+++. +. .+++++|+++.+++.|++++.. ..++++..+|+.+.. .++.+
T Consensus 107 ~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~~~ 186 (336)
T 2b25_A 107 DTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSL 186 (336)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC------
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccCCC
Confidence 49999999999999999987 43 5999999999999999998641 257999999998763 25567
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+||+|+++... ...+++++.++|+|||++++.....
T Consensus 187 ~fD~V~~~~~~------------~~~~l~~~~~~LkpgG~lv~~~~~~ 222 (336)
T 2b25_A 187 TFDAVALDMLN------------PHVTLPVFYPHLKHGGVCAVYVVNI 222 (336)
T ss_dssp -EEEEEECSSS------------TTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred CeeEEEECCCC------------HHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 89999986431 1237899999999999999877543
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.4e-13 Score=113.87 Aligned_cols=99 Identities=17% Similarity=0.197 Sum_probs=79.2
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++.. ..+++++|+ +.++. +++... .++++++.+|+.+. ++ +||+|++..++|
T Consensus 186 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~--~p--~~D~v~~~~vlh 258 (348)
T 3lst_A 186 GTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLRE--VP--HADVHVLKRILH 258 (348)
T ss_dssp EEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTC--CC--CCSEEEEESCGG
T ss_pred ceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCC--CC--CCcEEEEehhcc
Confidence 499999999999999999875 348999999 44544 333321 24799999999732 44 899999999999
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
++ +......+|+++.++|+|||++++.+..
T Consensus 259 ~~-----~d~~~~~~L~~~~~~LkpgG~l~i~e~~ 288 (348)
T 3lst_A 259 NW-----GDEDSVRILTNCRRVMPAHGRVLVIDAV 288 (348)
T ss_dssp GS-----CHHHHHHHHHHHHHTCCTTCEEEEEECC
T ss_pred CC-----CHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 98 4555589999999999999999998753
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.1e-13 Score=109.80 Aligned_cols=99 Identities=14% Similarity=0.106 Sum_probs=81.0
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEcccccc-ccc-----cCCCccEE
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQM-DEF-----QTGSFDSV 117 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~-~~~-----~~~~fD~I 117 (237)
.+|||+|||+|..+..+++.. ..+++++|+++.+++.|++++. +. .+++++.+|+.+. +.+ ..++||+|
T Consensus 81 ~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V 160 (247)
T 1sui_A 81 KNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFI 160 (247)
T ss_dssp CEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEE
T ss_pred CEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEE
Confidence 499999999999999999873 3599999999999999999874 22 4789999999764 212 15789999
Q ss_pred EeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
++.... .....+++.+.++|+|||++++..
T Consensus 161 ~~d~~~----------~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 161 FVDADK----------DNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp EECSCS----------TTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEcCch----------HHHHHHHHHHHHhCCCCeEEEEec
Confidence 987542 456789999999999999998764
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-12 Score=111.48 Aligned_cols=110 Identities=13% Similarity=0.141 Sum_probs=83.8
Q ss_pred CCCcEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEccccccccccCCCccEEEeccc
Q 026558 47 HHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (237)
Q Consensus 47 ~~~~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~ 122 (237)
+..+|||+|||+|.+++.++..+. .+++|+|+|+.+++.|++++. +. .++++.++|+.+++ ++.++||+|+++.+
T Consensus 217 ~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~fD~Ii~npP 295 (373)
T 3tm4_A 217 DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLS-QYVDSVDFAISNLP 295 (373)
T ss_dssp CSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGG-GTCSCEEEEEEECC
T ss_pred CCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCC-cccCCcCEEEECCC
Confidence 334999999999999999999873 489999999999999999984 22 47899999999987 66789999999988
Q ss_pred cceeccCCCChH-HHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 123 LDSLLCGSNSRQ-NATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 123 l~~~~~~~~~~~-~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
++.......... ....+++++.++| +|.+++.+..
T Consensus 296 yg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~ 331 (373)
T 3tm4_A 296 YGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTE 331 (373)
T ss_dssp CC------CCHHHHHHHHHHHHHHHE--EEEEEEEESC
T ss_pred CCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECC
Confidence 654321112222 3477889999999 5666666543
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.5e-13 Score=109.96 Aligned_cols=109 Identities=9% Similarity=0.108 Sum_probs=88.2
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--C-CCCcEEEEccccccccccCC
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--N-RPQLKYIKMDVRQMDEFQTG 112 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~-~~~~~~~~~d~~~~~~~~~~ 112 (237)
-+..+...+.++. +|||+|||+|.+++.+++.+..+|+++|+||.+++.++++++ + ..++.++++|+.++. ..+
T Consensus 115 er~ri~~~~~~g~-~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~--~~~ 191 (278)
T 3k6r_A 115 ERVRMAKVAKPDE-LVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP--GEN 191 (278)
T ss_dssp HHHHHHHHCCTTC-EEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC--CCS
T ss_pred HHHHHHHhcCCCC-EEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc--ccc
Confidence 3455666666666 999999999999999999986699999999999999999984 2 246899999999885 567
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.||.|+++.+.. ...++..+.++|++||.+.+..+
T Consensus 192 ~~D~Vi~~~p~~-----------~~~~l~~a~~~lk~gG~ih~~~~ 226 (278)
T 3k6r_A 192 IADRILMGYVVR-----------THEFIPKALSIAKDGAIIHYHNT 226 (278)
T ss_dssp CEEEEEECCCSS-----------GGGGHHHHHHHEEEEEEEEEEEE
T ss_pred CCCEEEECCCCc-----------HHHHHHHHHHHcCCCCEEEEEee
Confidence 899999875432 23567788899999999877554
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.1e-13 Score=108.79 Aligned_cols=109 Identities=16% Similarity=0.266 Sum_probs=74.8
Q ss_pred hHHHHHhhCCCC-CCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEE-Eccccccc--cccC
Q 026558 36 LAPLIKLYVPSH-HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYI-KMDVRQMD--EFQT 111 (237)
Q Consensus 36 ~~~~l~~~~~~~-~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~-~~d~~~~~--~~~~ 111 (237)
+..++..+.... +.+|||||||+|.++..+++.+..+++|+|+|+.|++.++++.. ++... ..++.... .++.
T Consensus 25 L~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~---~~~~~~~~~~~~~~~~~~~~ 101 (232)
T 3opn_A 25 LEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDE---RVVVMEQFNFRNAVLADFEQ 101 (232)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCT---TEEEECSCCGGGCCGGGCCS
T ss_pred HHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCc---cccccccceEEEeCHhHcCc
Confidence 556666654332 24999999999999999999975599999999999999887653 22111 11222111 1222
Q ss_pred CCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
..||.+.++.++..+ ..+++++.++|+|||.+++..
T Consensus 102 ~~~d~~~~D~v~~~l----------~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 102 GRPSFTSIDVSFISL----------DLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp CCCSEEEECCSSSCG----------GGTHHHHHHHSCTTCEEEEEE
T ss_pred CCCCEEEEEEEhhhH----------HHHHHHHHHhccCCCEEEEEE
Confidence 235666555554333 668999999999999999864
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-12 Score=109.00 Aligned_cols=107 Identities=13% Similarity=0.159 Sum_probs=82.4
Q ss_pred CcEEEEccCCchhHHHHHHcCC------CeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccccCCCccEEEecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY------EDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~------~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~ 121 (237)
.+|||+|||+|.++..+++... .+++|+|+++.+++.|+.+... ..++.+.++|..... ..++||+|+++.
T Consensus 132 ~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~--~~~~fD~Ii~NP 209 (344)
T 2f8l_A 132 VSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL--LVDPVDVVISDL 209 (344)
T ss_dssp EEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC--CCCCEEEEEEEC
T ss_pred CEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCcc--ccCCccEEEECC
Confidence 4999999999999999887641 4899999999999999998631 126889999987643 457899999999
Q ss_pred ccceeccC----------CCChH-HHHHHHHHHHHhcCCCcEEEEEE
Q 026558 122 TLDSLLCG----------SNSRQ-NATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 122 ~l~~~~~~----------~~~~~-~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+++++... ..+.. ....+++++.+.|+|||+++++.
T Consensus 210 Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~ 256 (344)
T 2f8l_A 210 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 256 (344)
T ss_dssp CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence 98765100 00001 12368999999999999998887
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.2e-14 Score=111.90 Aligned_cols=99 Identities=12% Similarity=0.065 Sum_probs=81.5
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEcccccccccc-----CCCccEEE
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDEFQ-----TGSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~~~-----~~~fD~I~ 118 (237)
.+|||+|||+|..+..+++.. ..+++++|+++.+++.|++++. +. .+++++++|+.+..... .++||+|+
T Consensus 62 ~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~ 141 (242)
T 3r3h_A 62 KKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIF 141 (242)
T ss_dssp SEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEE
T ss_pred CEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEE
Confidence 399999999999999999853 3599999999999999999874 22 47999999997753111 47899999
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+.... .....+++++.++|+|||++++..
T Consensus 142 ~d~~~----------~~~~~~l~~~~~~LkpGG~lv~d~ 170 (242)
T 3r3h_A 142 IDADK----------TNYLNYYELALKLVTPKGLIAIDN 170 (242)
T ss_dssp EESCG----------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCh----------HHhHHHHHHHHHhcCCCeEEEEEC
Confidence 87542 556779999999999999999854
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=6.3e-13 Score=112.39 Aligned_cols=97 Identities=18% Similarity=0.251 Sum_probs=81.7
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||+|||+|.++..+++.. ..+++++|+ +.+++.|++. ++++++.+|+.+ + ++ .||+|++..++|++
T Consensus 190 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~-~p--~~D~v~~~~~lh~~- 259 (352)
T 1fp2_A 190 ESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS----NNLTYVGGDMFT-S-IP--NADAVLLKYILHNW- 259 (352)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB----TTEEEEECCTTT-C-CC--CCSEEEEESCGGGS-
T ss_pred ceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC----CCcEEEeccccC-C-CC--CccEEEeehhhccC-
Confidence 499999999999999999874 348999999 9999887653 569999999976 3 44 39999999999998
Q ss_pred cCCCChHHHHHHHHHHHHhcCC---CcEEEEEEcC
Q 026558 128 CGSNSRQNATQMLKEVWRVLKD---KGVYILVTYG 159 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~ 159 (237)
+......+++++.++|+| ||++++.+..
T Consensus 260 ----~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~ 290 (352)
T 1fp2_A 260 ----TDKDCLRILKKCKEAVTNDGKRGKVTIIDMV 290 (352)
T ss_dssp ----CHHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred ----CHHHHHHHHHHHHHhCCCCCCCcEEEEEEee
Confidence 444555999999999999 9999988753
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.7e-13 Score=114.25 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=79.4
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--C-CCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--N-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
++|||||||+|.++..+++.|..+|+++|.|+ +++.|++..+ + ..++.++.+|+.++. + .++||+|++...-..
T Consensus 85 k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~-l-pe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 85 KTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVE-L-PEQVDAIVSEWMGYG 161 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCC-C-SSCEEEEECCCCBTT
T ss_pred CEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeec-C-CccccEEEeeccccc
Confidence 38999999999999999999877999999996 7888888763 2 246999999999886 4 478999998533222
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 155 (237)
+ ........++....++|+|||+++-
T Consensus 162 l----~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 162 L----LHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp B----TTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred c----cccchhhhHHHHHHhhCCCCceECC
Confidence 2 1224677888888999999999863
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.3e-13 Score=110.47 Aligned_cols=96 Identities=14% Similarity=0.199 Sum_probs=79.5
Q ss_pred CCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC------CCCcEEEEccccccccccCCCccEEEe
Q 026558 46 SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDEFQTGSFDSVVD 119 (237)
Q Consensus 46 ~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~~~~~~~fD~I~~ 119 (237)
+.+.+|||||||+|..+..+++.+ .+++++|+++.+++.|++++.. .++++++.+|+.+.. ++||+|++
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----~~fD~Ii~ 145 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----KKYDLIFC 145 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----CCEEEEEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----hhCCEEEE
Confidence 333599999999999999998886 7999999999999999988742 357899999998763 78999998
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+.. +...+++.+.++|+|||++++...
T Consensus 146 d~~------------dp~~~~~~~~~~L~pgG~lv~~~~ 172 (262)
T 2cmg_A 146 LQE------------PDIHRIDGLKRMLKEDGVFISVAK 172 (262)
T ss_dssp SSC------------CCHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCC------------ChHHHHHHHHHhcCCCcEEEEEcC
Confidence 731 112389999999999999998753
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.1e-12 Score=107.50 Aligned_cols=101 Identities=14% Similarity=0.176 Sum_probs=86.9
Q ss_pred CcEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcCC--CCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..++++.. .+++..|. |.+++.|+++... .++++++.+|+.+.+ . ..+|+|++..+||.
T Consensus 181 ~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~-~--~~~D~~~~~~vlh~ 256 (353)
T 4a6d_A 181 PLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDP-L--PEADLYILARVLHD 256 (353)
T ss_dssp SEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSC-C--CCCSEEEEESSGGG
T ss_pred CeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCC-C--CCceEEEeeeeccc
Confidence 4899999999999999999863 47888887 8999999998753 468999999998654 3 35799999999998
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+ +.+....+|++++++|+|||++++...
T Consensus 257 ~-----~d~~~~~iL~~~~~al~pgg~lli~e~ 284 (353)
T 4a6d_A 257 W-----ADGKCSHLLERIYHTCKPGGGILVIES 284 (353)
T ss_dssp S-----CHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred C-----CHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 8 667778999999999999999999875
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=105.03 Aligned_cols=97 Identities=15% Similarity=0.233 Sum_probs=80.5
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++. ..+++++|+++.+++.|+++.. +. .++++..+|+.+.. ++.+.||+|+++..
T Consensus 93 ~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~--- 167 (248)
T 2yvl_A 93 KRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE-VPEGIFHAAFVDVR--- 167 (248)
T ss_dssp CEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC-CCTTCBSEEEECSS---
T ss_pred CEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc-cCCCcccEEEECCc---
Confidence 49999999999999999988 4599999999999999999873 22 57899999998753 25678999998422
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+...+++++.++|+|||++++....
T Consensus 168 ---------~~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 168 ---------EPWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp ---------CGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred ---------CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 3356789999999999999998854
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=112.69 Aligned_cols=122 Identities=14% Similarity=0.167 Sum_probs=91.6
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CC-C-CcEEEEcccccccc-c--
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NR-P-QLKYIKMDVRQMDE-F-- 109 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~-~-~~~~~~~d~~~~~~-~-- 109 (237)
..++... .++. +|||+|||+|.++..+++.+..+++++|+|+.+++.|++++. +. . +++++++|+.+... +
T Consensus 212 ~~~l~~~-~~~~-~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~ 289 (396)
T 3c0k_A 212 RLATRRY-VENK-RVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD 289 (396)
T ss_dssp HHHHHHH-CTTC-EEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHH
T ss_pred HHHHHHh-hCCC-eEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHh
Confidence 3455554 3343 999999999999999999875699999999999999999984 33 3 78999999987641 1
Q ss_pred cCCCccEEEeccccceecc--CCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 110 QTGSFDSVVDKGTLDSLLC--GSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 110 ~~~~fD~I~~~~~l~~~~~--~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
...+||+|+++.+...... -.........++.++.+.|+|||++++.+...
T Consensus 290 ~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 290 RGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp TTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred cCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 1468999999865321100 00112567889999999999999999987644
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-12 Score=109.74 Aligned_cols=102 Identities=13% Similarity=0.214 Sum_probs=83.0
Q ss_pred CcEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccc-cccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQ-MDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~-~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+| |+|.++..++..+. .+++++|+|+.+++.|+++++ +..+++++++|+.+ ++....++||+|+++.+++
T Consensus 174 ~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~ 252 (373)
T 2qm3_A 174 KDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPET 252 (373)
T ss_dssp CEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCSS
T ss_pred CEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCCc
Confidence 4999999 99999999998864 699999999999999999974 32379999999988 5421346899999998765
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEE-EEEEcC
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVY-ILVTYG 159 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l-~~~~~~ 159 (237)
.. ....+++++.++|+|||++ ++.+..
T Consensus 253 ~~--------~~~~~l~~~~~~LkpgG~~~~~~~~~ 280 (373)
T 2qm3_A 253 LE--------AIRAFVGRGIATLKGPRCAGYFGITR 280 (373)
T ss_dssp HH--------HHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred hH--------HHHHHHHHHHHHcccCCeEEEEEEec
Confidence 43 2588999999999999944 555543
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=104.87 Aligned_cols=99 Identities=14% Similarity=0.092 Sum_probs=80.3
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEcccccc-ccc-------------
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQM-DEF------------- 109 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~-~~~------------- 109 (237)
.+|||+|||+|..+..+++.. ..+++++|+++.+++.|++++. +. .++.+..+|+.+. +.+
T Consensus 62 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f 141 (239)
T 2hnk_A 62 KRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDF 141 (239)
T ss_dssp SEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTT
T ss_pred CEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccc
Confidence 399999999999999999874 3599999999999999999974 22 2489999998663 211
Q ss_pred c-C-CCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 110 Q-T-GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 110 ~-~-~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+ . ++||+|++.... .....+++++.++|+|||++++..
T Consensus 142 ~~~~~~fD~I~~~~~~----------~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 142 AFGPSSIDLFFLDADK----------ENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp CCSTTCEEEEEECSCG----------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCCCcCEEEEeCCH----------HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 2 2 789999987543 445788999999999999999865
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=7.3e-13 Score=113.25 Aligned_cols=111 Identities=14% Similarity=0.136 Sum_probs=85.8
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccc-c--cCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDE-F--QTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~-~--~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|.++..+++. ..+++++|+|+.+++.|++++. +..+++++++|+.+... + ...+||+|+++.+.
T Consensus 211 ~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~ 289 (382)
T 1wxx_A 211 ERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPA 289 (382)
T ss_dssp EEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred CeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCCC
Confidence 39999999999999999988 4599999999999999999974 33468999999987641 1 25789999997654
Q ss_pred ceeccCC--CChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 124 DSLLCGS--NSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 124 ~~~~~~~--~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
....... ........++..+.++|+|||++++.+...
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 290 FAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp SCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 2210000 011456789999999999999999988654
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.5e-13 Score=111.03 Aligned_cols=102 Identities=18% Similarity=0.172 Sum_probs=73.8
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC---CC-CCcEEE--EccccccccccCCCccEEEeccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS---NR-PQLKYI--KMDVRQMDEFQTGSFDSVVDKGT 122 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~---~~-~~~~~~--~~d~~~~~~~~~~~fD~I~~~~~ 122 (237)
.+|||||||+|.++..+++. .+|+|+|+++ ++..++++.. .. .++.++ ++|+.+++ +++||+|+++..
T Consensus 84 ~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~---~~~fD~Vvsd~~ 157 (276)
T 2wa2_A 84 GTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME---PFQADTVLCDIG 157 (276)
T ss_dssp EEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC---CCCCSEEEECCC
T ss_pred CEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC---CCCcCEEEECCC
Confidence 49999999999999999988 4899999999 5433322211 01 168899 89998875 678999999866
Q ss_pred cceeccCCCChHHH--HHHHHHHHHhcCCCc--EEEEEEcC
Q 026558 123 LDSLLCGSNSRQNA--TQMLKEVWRVLKDKG--VYILVTYG 159 (237)
Q Consensus 123 l~~~~~~~~~~~~~--~~~l~~~~~~L~pgG--~l~~~~~~ 159 (237)
++. +....+.. ..+|+.+.++|+||| .+++..+.
T Consensus 158 -~~~--~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 158 -ESN--PTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp -CCC--SCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred -cCC--CchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 332 10001111 137899999999999 99887765
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.1e-13 Score=106.42 Aligned_cols=99 Identities=12% Similarity=0.081 Sum_probs=80.9
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEccccccc-cc-----cCCCccEE
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMD-EF-----QTGSFDSV 117 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~-~~-----~~~~fD~I 117 (237)
.+|||+|||+|..+..+++.. ..+++++|+++.+++.|++++. +. .+++++.+|+.+.. .+ ..++||+|
T Consensus 72 ~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I 151 (237)
T 3c3y_A 72 KKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFG 151 (237)
T ss_dssp CEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEE
Confidence 499999999999999999863 3599999999999999999874 22 36899999997642 12 15789999
Q ss_pred EeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
++.... .....+++.+.++|+|||++++..
T Consensus 152 ~~d~~~----------~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 152 FVDADK----------PNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EECSCG----------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EECCch----------HHHHHHHHHHHHhcCCCeEEEEec
Confidence 987432 456889999999999999998865
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.8e-13 Score=109.33 Aligned_cols=115 Identities=12% Similarity=0.079 Sum_probs=78.2
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---C-CCcEEE--Eccccccccc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---R-PQLKYI--KMDVRQMDEF 109 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~-~~~~~~--~~d~~~~~~~ 109 (237)
+..++......+..+|||||||+|.++..+++. .+|+|+|+++ ++..++++... . .++.++ ++|+.+++
T Consensus 63 L~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-- 137 (265)
T 2oxt_A 63 LAWMEERGYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP-- 137 (265)
T ss_dssp HHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--
T ss_pred HHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--
Confidence 344444432333349999999999999999988 4899999998 43322221100 0 168888 89998875
Q ss_pred cCCCccEEEeccccceeccCCCChHHH--HHHHHHHHHhcCCCc--EEEEEEcC
Q 026558 110 QTGSFDSVVDKGTLDSLLCGSNSRQNA--TQMLKEVWRVLKDKG--VYILVTYG 159 (237)
Q Consensus 110 ~~~~fD~I~~~~~l~~~~~~~~~~~~~--~~~l~~~~~~L~pgG--~l~~~~~~ 159 (237)
+++||+|+|+.. ++. +....+.. ..+|+.+.++|+||| .+++..+.
T Consensus 138 -~~~fD~V~sd~~-~~~--~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 138 -VERTDVIMCDVG-ESS--PKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp -CCCCSEEEECCC-CCC--SCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred -CCCCcEEEEeCc-ccC--CccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 678999999866 332 11001111 137899999999999 99987765
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4.3e-13 Score=111.18 Aligned_cols=104 Identities=13% Similarity=0.076 Sum_probs=72.6
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeC----CHHHHHHHHHHcCCCCCcEEEEc-cccccccccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDI----SSVVIEAMMKKYSNRPQLKYIKM-DVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~----s~~~~~~a~~~~~~~~~~~~~~~-d~~~~~~~~~~~fD~I~~~~~l 123 (237)
.+|||||||+|.++..+++. .+|+|+|+ ++.+++.+..+..+.+++.++++ |+..++ .++||+|+|+..+
T Consensus 84 ~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~---~~~fD~V~sd~~~ 158 (305)
T 2p41_A 84 GKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP---PERCDTLLCDIGE 158 (305)
T ss_dssp EEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC---CCCCSEEEECCCC
T ss_pred CEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCC---cCCCCEEEECCcc
Confidence 49999999999999999988 38999999 55443211111011246888888 887765 5689999998765
Q ss_pred ceeccCCCChHH--HHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 124 DSLLCGSNSRQN--ATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 124 ~~~~~~~~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+ . +....+. ...+|..+.++|+|||.+++..+..
T Consensus 159 ~-~--g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 159 S-S--PNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp C-C--SSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred c-c--CcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 3 1 0000111 1257899999999999998876654
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-12 Score=107.29 Aligned_cols=97 Identities=15% Similarity=0.245 Sum_probs=80.8
Q ss_pred CcEEEEccCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHcCC--C-CCcEEEEccccccccccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSN--R-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-~-~~~~~~vD~s~~~~~~a~~~~~~--~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|.++..+++. + ..+++++|+++.+++.|++++.. . .++.+..+|+.+. ++.++||+|+++.
T Consensus 114 ~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D~V~~~~-- 189 (277)
T 1o54_A 114 DRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG--FDEKDVDALFLDV-- 189 (277)
T ss_dssp CEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC--CSCCSEEEEEECC--
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc--ccCCccCEEEECC--
Confidence 49999999999999999987 4 35999999999999999998742 2 4789999999876 4567899999853
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
.+...+++++.++|+|||.+++.+..
T Consensus 190 ----------~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (277)
T 1o54_A 190 ----------PDPWNYIDKCWEALKGGGRFATVCPT 215 (277)
T ss_dssp ----------SCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred ----------cCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 22357899999999999999998754
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-12 Score=100.52 Aligned_cols=101 Identities=16% Similarity=0.193 Sum_probs=75.0
Q ss_pred CcEEEEccCCchhHHHHHHcC-C---------CeEEEEeCCHHHHHHHHHHcCCCCCcEEE-Ecccccccc-------cc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-Y---------EDVVNVDISSVVIEAMMKKYSNRPQLKYI-KMDVRQMDE-------FQ 110 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~---------~~~~~vD~s~~~~~~a~~~~~~~~~~~~~-~~d~~~~~~-------~~ 110 (237)
.+|||+|||+|.++..+++.. . .+++++|+|+.. ...+++++ .+|+.+... ++
T Consensus 24 ~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------~~~~~~~~~~~d~~~~~~~~~~~~~~~ 94 (196)
T 2nyu_A 24 LRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------PLEGATFLCPADVTDPRTSQRILEVLP 94 (196)
T ss_dssp CEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------CCTTCEEECSCCTTSHHHHHHHHHHSG
T ss_pred CEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------cCCCCeEEEeccCCCHHHHHHHHHhcC
Confidence 499999999999999999873 2 589999999832 12468888 888876431 23
Q ss_pred CCCccEEEeccccceeccCCCChHHH-------HHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 111 TGSFDSVVDKGTLDSLLCGSNSRQNA-------TQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 111 ~~~fD~I~~~~~l~~~~~~~~~~~~~-------~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
.++||+|+++..++... . ...+. ..+++++.++|+|||.+++.++...
T Consensus 95 ~~~fD~V~~~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 149 (196)
T 2nyu_A 95 GRRADVILSDMAPNATG--F-RDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGS 149 (196)
T ss_dssp GGCEEEEEECCCCCCCS--C-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSG
T ss_pred CCCCcEEEeCCCCCCCC--C-cccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 56899999977554320 0 00112 5789999999999999999877554
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-12 Score=112.16 Aligned_cols=112 Identities=14% Similarity=0.138 Sum_probs=85.5
Q ss_pred CcEEEEccCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~--~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|..+..+++. +...++++|+++.+++.+++++. +..++.+.++|+.++.....+.||+|+++.++.
T Consensus 107 ~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~DaPCS 186 (456)
T 3m4x_A 107 EKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPCS 186 (456)
T ss_dssp CEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEECCCC
T ss_pred CEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEECCCCC
Confidence 49999999999999999876 23489999999999999999984 345789999999887533467899999976532
Q ss_pred eeccCCCCh---------------HHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 125 SLLCGSNSR---------------QNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 125 ~~~~~~~~~---------------~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
....-...+ ..+..+|+++.++|+|||+++..|.+-
T Consensus 187 g~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 187 GEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp CGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred CccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 210000000 233478999999999999999988643
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.36 E-value=5.8e-12 Score=103.48 Aligned_cols=86 Identities=17% Similarity=0.274 Sum_probs=68.4
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccccccCCC
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~ 113 (237)
..++.........+|||+|||+|.++..+++.+. +++++|+|+.+++.++++.... ++++++++|+.+.+ ++ .
T Consensus 18 ~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~-~~--~ 93 (285)
T 1zq9_A 18 NSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD-LP--F 93 (285)
T ss_dssp HHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC-CC--C
T ss_pred HHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceeccc-ch--h
Confidence 3444443333334999999999999999999875 9999999999999999998532 47899999998876 43 7
Q ss_pred ccEEEecccccee
Q 026558 114 FDSVVDKGTLDSL 126 (237)
Q Consensus 114 fD~I~~~~~l~~~ 126 (237)
||+|+++.+++..
T Consensus 94 fD~vv~nlpy~~~ 106 (285)
T 1zq9_A 94 FDTCVANLPYQIS 106 (285)
T ss_dssp CSEEEEECCGGGH
T ss_pred hcEEEEecCcccc
Confidence 9999998776544
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-12 Score=112.77 Aligned_cols=111 Identities=13% Similarity=0.142 Sum_probs=84.9
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|..+..+++.. ...++++|+|+.+++.++++++ +.. +.++++|+.+++....++||+|+++.+..
T Consensus 103 ~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D~PcS 181 (464)
T 3m6w_A 103 ERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLDAPCS 181 (464)
T ss_dssp CEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEECCCC
T ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEECCCcC
Confidence 499999999999999999763 2489999999999999999984 334 89999999887633467899999865532
Q ss_pred eec--cCCC------Ch-------HHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 125 SLL--CGSN------SR-------QNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 125 ~~~--~~~~------~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
... ...+ +. ..+..+++++.++|+|||++++.|.+-
T Consensus 182 g~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 182 GEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp CGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 110 0000 01 134789999999999999999987643
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-12 Score=103.11 Aligned_cols=100 Identities=10% Similarity=0.101 Sum_probs=80.4
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEcccccc-ccc--cC--CCccEEE
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQM-DEF--QT--GSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~-~~~--~~--~~fD~I~ 118 (237)
.+|||+|||+|..+..+++.. ..+++++|+++.+++.|++++. +. .+++++.+|+.+. +.+ .. ++||+|+
T Consensus 74 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~ 153 (232)
T 3cbg_A 74 KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIF 153 (232)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEE
T ss_pred CEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEE
Confidence 399999999999999999863 3499999999999999998873 22 3689999998653 212 22 7899999
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+.... .....+++++.++|+|||++++...
T Consensus 154 ~d~~~----------~~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 154 IDADK----------RNYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp ECSCG----------GGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred ECCCH----------HHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 87542 4567899999999999999988653
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-12 Score=111.86 Aligned_cols=111 Identities=12% Similarity=0.164 Sum_probs=85.4
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|..+..+++.. ...++++|+|+.+++.+++++. +..++.++++|+.+++....+.||+|+++.++.
T Consensus 119 ~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~PcS 198 (479)
T 2frx_A 119 QRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPCS 198 (479)
T ss_dssp SEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECCCC
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCCcC
Confidence 499999999999999999863 3599999999999999999984 445789999999887632467899999965432
Q ss_pred ee---ccCC-----CCh-------HHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 125 SL---LCGS-----NSR-------QNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 125 ~~---~~~~-----~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
.. .-.+ .+. ..+..+|+++.++|+|||++++.|.+
T Consensus 199 g~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 199 GEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT 248 (479)
T ss_dssp CGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 11 0000 011 22467899999999999999998864
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-12 Score=104.04 Aligned_cols=99 Identities=13% Similarity=0.144 Sum_probs=80.5
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEccccccc-cccC----CCccEEE
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMD-EFQT----GSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~-~~~~----~~fD~I~ 118 (237)
.+|||+|||+|..+..+++.. ..+++++|+++.+++.|++++. +. .+++++.+|+.+.. .+.. ++||+|+
T Consensus 71 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~ 150 (229)
T 2avd_A 71 KKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAV 150 (229)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEE
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEE
Confidence 399999999999999999863 3599999999999999999874 22 47899999987642 1221 6899999
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
++... .....+++++.++|+|||++++..
T Consensus 151 ~d~~~----------~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 151 VDADK----------ENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp ECSCS----------TTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ECCCH----------HHHHHHHHHHHHHcCCCeEEEEEC
Confidence 97542 455789999999999999998854
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-12 Score=103.65 Aligned_cols=106 Identities=12% Similarity=0.122 Sum_probs=85.4
Q ss_pred hCCCCCCcEEEEccCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccccCCCccEEEec
Q 026558 43 YVPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (237)
Q Consensus 43 ~~~~~~~~iLdlG~G~G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~ 120 (237)
.++.. .+|||||||+|.++..++.. ...+|+++|+++.+++.+++++.. ..+.++...|....+ +.+.||++++.
T Consensus 129 ~i~~p-~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~--p~~~~DvaL~l 205 (281)
T 3lcv_B 129 HLPRP-NTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR--LDEPADVTLLL 205 (281)
T ss_dssp GSCCC-SEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC--CCSCCSEEEET
T ss_pred ccCCC-ceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC--CCCCcchHHHH
Confidence 34444 49999999999999998877 356999999999999999999842 345788888887765 57889999999
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
-+++++ ..+.....+ ++++.|+++|+++...
T Consensus 206 kti~~L-----e~q~kg~g~-~ll~aL~~~~vvVSfp 236 (281)
T 3lcv_B 206 KTLPCL-----ETQQRGSGW-EVIDIVNSPNIVVTFP 236 (281)
T ss_dssp TCHHHH-----HHHSTTHHH-HHHHHSSCSEEEEEEE
T ss_pred HHHHHh-----hhhhhHHHH-HHHHHhCCCCEEEecc
Confidence 999998 233333456 8999999999987754
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.8e-12 Score=107.79 Aligned_cols=101 Identities=20% Similarity=0.228 Sum_probs=82.0
Q ss_pred hhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEccccccccccCCCccEEE
Q 026558 42 LYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDEFQTGSFDSVV 118 (237)
Q Consensus 42 ~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~~~~~~fD~I~ 118 (237)
..+.++. +|||+|||+|.++.. ++ +..+++++|+|+.+++.|++++. +. .+++++++|+.+.. ++||+|+
T Consensus 191 ~~~~~~~-~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~----~~fD~Vi 263 (336)
T 2yx1_A 191 KKVSLND-VVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD----VKGNRVI 263 (336)
T ss_dssp HHCCTTC-EEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC----CCEEEEE
T ss_pred HhcCCCC-EEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc----CCCcEEE
Confidence 3444444 999999999999999 87 45599999999999999999974 22 47899999998874 7899999
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
++.+. ....+++.+.++|+|||.+++.++..
T Consensus 264 ~dpP~-----------~~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 264 MNLPK-----------FAHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp ECCTT-----------TGGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred ECCcH-----------hHHHHHHHHHHHcCCCCEEEEEEeec
Confidence 87442 12378899999999999999877544
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=8e-12 Score=102.84 Aligned_cols=88 Identities=15% Similarity=0.173 Sum_probs=71.6
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCcc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
+..++.........+|||||||+|.++..+++.+. +++++|+++.+++.+++++...++++++++|+.+++ ++...||
T Consensus 39 ~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~-~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~-~~~~~fD 116 (295)
T 3gru_A 39 VNKAVESANLTKDDVVLEIGLGKGILTEELAKNAK-KVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVD-LNKLDFN 116 (295)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSC-GGGSCCS
T ss_pred HHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCC-cccCCcc
Confidence 34444444333334999999999999999999864 999999999999999999865568999999999887 6677899
Q ss_pred EEEeccccce
Q 026558 116 SVVDKGTLDS 125 (237)
Q Consensus 116 ~I~~~~~l~~ 125 (237)
+|+++.+++.
T Consensus 117 ~Iv~NlPy~i 126 (295)
T 3gru_A 117 KVVANLPYQI 126 (295)
T ss_dssp EEEEECCGGG
T ss_pred EEEEeCcccc
Confidence 9999877643
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=8.3e-12 Score=98.77 Aligned_cols=99 Identities=16% Similarity=0.151 Sum_probs=80.7
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-CCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||||||+|.++..+. +...|+++||++.+++.+++++. ...+..+..+|....+ +.+.||+|++.-++|++
T Consensus 107 ~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~--~~~~~DvvLllk~lh~L- 181 (253)
T 3frh_A 107 RRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAP--PAEAGDLALIFKLLPLL- 181 (253)
T ss_dssp SEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSC--CCCBCSEEEEESCHHHH-
T ss_pred CeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCC--CCCCcchHHHHHHHHHh-
Confidence 499999999999999888 44599999999999999999974 2367889999998776 45689999999888888
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
..+.....+ ++.+.|+++|+++...
T Consensus 182 ----E~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 182 ----EREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp ----HHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred ----hhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 222333344 8888999999887654
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-12 Score=104.47 Aligned_cols=108 Identities=10% Similarity=0.076 Sum_probs=71.2
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEcccccc-c-ccc---CCCccEEEe
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQM-D-EFQ---TGSFDSVVD 119 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~-~-~~~---~~~fD~I~~ 119 (237)
.+|||+|||+|.++..+++.. ..+++|+|+|+.+++.|++++. +. .+++++++|+.+. . .++ +++||+|++
T Consensus 67 ~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~ 146 (254)
T 2h00_A 67 RRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMC 146 (254)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEE
T ss_pred CEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEEEE
Confidence 489999999999999888763 3499999999999999999974 22 2489999998662 1 133 268999999
Q ss_pred ccccceeccCCCC--------hHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 120 KGTLDSLLCGSNS--------RQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 120 ~~~l~~~~~~~~~--------~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
+.+++........ ......++.++.++|+|||.+.+.
T Consensus 147 npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 147 NPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp CCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred CCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 9876644100000 011234566777777777766543
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.1e-12 Score=107.64 Aligned_cols=96 Identities=17% Similarity=0.229 Sum_probs=80.6
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ .++++++.+|+.+ + ++ .||+|++..++|++
T Consensus 195 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~-~~--~~D~v~~~~vlh~~- 264 (358)
T 1zg3_A 195 ESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG----NENLNFVGGDMFK-S-IP--SADAVLLKWVLHDW- 264 (358)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC----CSSEEEEECCTTT-C-CC--CCSEEEEESCGGGS-
T ss_pred CEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc----CCCcEEEeCccCC-C-CC--CceEEEEcccccCC-
Confidence 499999999999999999885 348999999 788876654 2569999999987 4 44 49999999999998
Q ss_pred cCCCChHHHHHHHHHHHHhcCC---CcEEEEEEc
Q 026558 128 CGSNSRQNATQMLKEVWRVLKD---KGVYILVTY 158 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~ 158 (237)
+......+++++.++|+| ||++++.+.
T Consensus 265 ----~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 294 (358)
T 1zg3_A 265 ----NDEQSLKILKNSKEAISHKGKDGKVIIIDI 294 (358)
T ss_dssp ----CHHHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred ----CHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 444456999999999999 999998764
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.31 E-value=2e-11 Score=106.45 Aligned_cols=112 Identities=13% Similarity=0.138 Sum_probs=84.9
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccc-ccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDE-FQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~-~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|..+..+++.. ..+++++|+++.+++.+++++. +..++.++++|+.+.+. ++.++||+|+++.++
T Consensus 261 ~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc 340 (450)
T 2yxl_A 261 ETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLDAPC 340 (450)
T ss_dssp CEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEECCC
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEEcCCC
Confidence 499999999999999999863 2599999999999999999974 44579999999988753 444789999986543
Q ss_pred ceecc-C-CCC------hH-------HHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 124 DSLLC-G-SNS------RQ-------NATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 124 ~~~~~-~-~~~------~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
..... . .+. +. .+..+++++.++|+|||++++.+.+-
T Consensus 341 sg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 341 TSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp CCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 22200 0 000 01 12678999999999999999988644
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.9e-11 Score=101.02 Aligned_cols=86 Identities=20% Similarity=0.273 Sum_probs=64.2
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCC
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~ 113 (237)
+..++.........+|||+|||+|.++..+++.+. +++|+|+++.+++.++++.. +.++++++++|+.+.+ + .+
T Consensus 31 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~-~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~-~--~~ 106 (299)
T 2h1r_A 31 LDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAK-KVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTV-F--PK 106 (299)
T ss_dssp HHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSC-C--CC
T ss_pred HHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCC-c--cc
Confidence 34444444333334999999999999999998864 99999999999999999873 3468999999998876 3 48
Q ss_pred ccEEEeccccce
Q 026558 114 FDSVVDKGTLDS 125 (237)
Q Consensus 114 fD~I~~~~~l~~ 125 (237)
||+|+++.+.+.
T Consensus 107 ~D~Vv~n~py~~ 118 (299)
T 2h1r_A 107 FDVCTANIPYKI 118 (299)
T ss_dssp CSEEEEECCGGG
T ss_pred CCEEEEcCCccc
Confidence 999999877654
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-11 Score=107.36 Aligned_cols=112 Identities=16% Similarity=0.209 Sum_probs=84.9
Q ss_pred CcEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEcccccccc-ccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDE-FQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~-~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|..+..+++... .+++++|+++.+++.+++++.. ..++.++++|+.+.+. ++.++||+|+++.++..
T Consensus 248 ~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg 327 (429)
T 1sqg_A 248 EHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSA 327 (429)
T ss_dssp CEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECCCCC
T ss_pred CeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeCCCCc
Confidence 4999999999999999998763 5999999999999999998742 1257899999987653 44578999998654332
Q ss_pred ecc--CCCC------h-------HHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 126 LLC--GSNS------R-------QNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 126 ~~~--~~~~------~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
... ..+. . ..+..+++++.+.|+|||++++.+.+-
T Consensus 328 ~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 328 TGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp GGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred ccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 110 0000 0 123588999999999999999988543
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=6.5e-11 Score=102.75 Aligned_cols=97 Identities=13% Similarity=0.241 Sum_probs=75.9
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccc-c--ccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMD-E--FQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~-~--~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.|++++. +..+++|+++|+.+.. . +..++||+|+++.+.
T Consensus 288 ~~VLDlgcG~G~~~~~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr 366 (433)
T 1uwv_A 288 DRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPAR 366 (433)
T ss_dssp CEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCT
T ss_pred CEEEECCCCCCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEECCCC
Confidence 499999999999999999885 499999999999999999983 3458999999998732 1 456789999998665
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
... . .+++.+. .++|++++++..
T Consensus 367 ~g~-------~---~~~~~l~-~~~p~~ivyvsc 389 (433)
T 1uwv_A 367 AGA-------A---GVMQQII-KLEPIRIVYVSC 389 (433)
T ss_dssp TCC-------H---HHHHHHH-HHCCSEEEEEES
T ss_pred ccH-------H---HHHHHHH-hcCCCeEEEEEC
Confidence 433 2 3444444 378888877755
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-12 Score=99.79 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=74.3
Q ss_pred CCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---cCCCccEEEec
Q 026558 44 VPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---QTGSFDSVVDK 120 (237)
Q Consensus 44 ~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---~~~~fD~I~~~ 120 (237)
+.++. +|||+|||. +++|+|+.|++.|+++... ++++.++|+.+++ + ++++||+|++.
T Consensus 10 ~~~g~-~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~--~~~~~~~d~~~~~-~~~~~~~~fD~V~~~ 70 (176)
T 2ld4_A 10 ISAGQ-FVAVVWDKS---------------SPVEALKGLVDKLQALTGN--EGRVSVENIKQLL-QSAHKESSFDIILSG 70 (176)
T ss_dssp CCTTS-EEEEEECTT---------------SCHHHHHHHHHHHHHHTTT--TSEEEEEEGGGGG-GGCCCSSCEEEEEEC
T ss_pred CCCCC-EEEEecCCc---------------eeeeCCHHHHHHHHHhccc--CcEEEEechhcCc-cccCCCCCEeEEEEC
Confidence 34444 999999986 2399999999999999753 5899999999887 5 68899999999
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+++++. .+...++++++++|||||++++..
T Consensus 71 ~~l~~~~------~~~~~~l~~~~r~LkpgG~l~~~~ 101 (176)
T 2ld4_A 71 LVPGSTT------LHSAEILAEIARILRPGGCLFLKE 101 (176)
T ss_dssp CSTTCCC------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred Chhhhcc------cCHHHHHHHHHHHCCCCEEEEEEc
Confidence 9998761 234789999999999999999854
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=8.4e-12 Score=107.74 Aligned_cols=115 Identities=17% Similarity=0.224 Sum_probs=83.9
Q ss_pred hHHHHHhhCCC-CCCcEEEEccCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCC
Q 026558 36 LAPLIKLYVPS-HHQRILIVGCGNSAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTG 112 (237)
Q Consensus 36 ~~~~l~~~~~~-~~~~iLdlG~G~G~~~~~~~~~--~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~ 112 (237)
+.+.+...+.. ...+|||+|||+|.++..++++ ...+++|+|+++.+++.| .++.++++|+.+.. ..+
T Consensus 27 l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-------~~~~~~~~D~~~~~--~~~ 97 (421)
T 2ih2_A 27 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------PWAEGILADFLLWE--PGE 97 (421)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-------TTEEEEESCGGGCC--CSS
T ss_pred HHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-------CCCcEEeCChhhcC--ccC
Confidence 44444444442 2349999999999999999985 335999999999998776 46889999998875 457
Q ss_pred CccEEEeccccceeccCC-----CChH-----------------HHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 113 SFDSVVDKGTLDSLLCGS-----NSRQ-----------------NATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~-----~~~~-----------------~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+||+|+++.++....... ...+ ....+++.+.++|+|||+++++...
T Consensus 98 ~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 98 AFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp CEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 899999987764431100 0011 1236799999999999999988743
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.26 E-value=9.6e-11 Score=94.05 Aligned_cols=73 Identities=16% Similarity=0.343 Sum_probs=61.7
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccC-CCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQT-GSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~-~~fD~I~~~~~l~ 124 (237)
.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.+++++...++++++++|+.+++ ++. ..| .|+++.+++
T Consensus 32 ~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~-~~~~~~~-~vv~nlPy~ 105 (244)
T 1qam_A 32 DNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFK-FPKNQSY-KIFGNIPYN 105 (244)
T ss_dssp CEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCC-CCSSCCC-EEEEECCGG
T ss_pred CEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCC-cccCCCe-EEEEeCCcc
Confidence 489999999999999999997 4999999999999999999875568999999999887 543 345 577765553
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.2e-11 Score=106.15 Aligned_cols=121 Identities=15% Similarity=0.163 Sum_probs=87.6
Q ss_pred hHHHHHhhCCC-CCCcEEEEccCCchhHHHHHHc--------------CCCeEEEEeCCHHHHHHHHHHc--CCCC--Cc
Q 026558 36 LAPLIKLYVPS-HHQRILIVGCGNSAFSEGMVDD--------------GYEDVVNVDISSVVIEAMMKKY--SNRP--QL 96 (237)
Q Consensus 36 ~~~~l~~~~~~-~~~~iLdlG~G~G~~~~~~~~~--------------~~~~~~~vD~s~~~~~~a~~~~--~~~~--~~ 96 (237)
+.+++...+.+ ...+|||+|||+|.++..+++. ....++|+|+++.+++.|+.++ .+.. +.
T Consensus 159 v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~ 238 (445)
T 2okc_A 159 LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 238 (445)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred HHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCC
Confidence 44444444333 3349999999999999988764 1248999999999999999886 3332 67
Q ss_pred EEEEccccccccccCCCccEEEeccccceeccCCC----------ChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 97 KYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSN----------SRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 97 ~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~----------~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.+.++|....+ ...+||+|+++.++........ .......+++++.+.|+|||+++++..
T Consensus 239 ~i~~gD~l~~~--~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 239 PIVCEDSLEKE--PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp SEEECCTTTSC--CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CEeeCCCCCCc--ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 89999998765 2348999999988765421110 011234789999999999999988773
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.22 E-value=8.9e-11 Score=94.75 Aligned_cols=85 Identities=19% Similarity=0.381 Sum_probs=67.5
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccccc----C
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQ----T 111 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~----~ 111 (237)
+..++.........+|||||||+|.++..+++.+ .+++++|+++.+++.+++++...++++++++|+.+++ ++ .
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~-~~~~~~~ 95 (255)
T 3tqs_A 18 LQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFD-FSSVKTD 95 (255)
T ss_dssp HHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCC-GGGSCCS
T ss_pred HHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCC-HHHhccC
Confidence 3445554433333489999999999999999987 4999999999999999999876678999999998876 33 3
Q ss_pred CCccEEEecccc
Q 026558 112 GSFDSVVDKGTL 123 (237)
Q Consensus 112 ~~fD~I~~~~~l 123 (237)
+.|| |+++.++
T Consensus 96 ~~~~-vv~NlPY 106 (255)
T 3tqs_A 96 KPLR-VVGNLPY 106 (255)
T ss_dssp SCEE-EEEECCH
T ss_pred CCeE-EEecCCc
Confidence 5688 7777554
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-10 Score=101.18 Aligned_cols=97 Identities=18% Similarity=0.224 Sum_probs=75.6
Q ss_pred CCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccc
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~ 122 (237)
.++. +|||+|||+|.++..+++.+. +++|+|+|+.+++.|++++. +.. ++++++|+.++. +. +||+|+++.+
T Consensus 289 ~~~~-~VLDlgcG~G~~sl~la~~~~-~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~--~~-~fD~Vv~dPP 362 (425)
T 2jjq_A 289 VEGE-KILDMYSGVGTFGIYLAKRGF-NVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVS--VK-GFDTVIVDPP 362 (425)
T ss_dssp CCSS-EEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCC--CT-TCSEEEECCC
T ss_pred CCCC-EEEEeeccchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcC--cc-CCCEEEEcCC
Confidence 3444 999999999999999998864 99999999999999999874 333 899999998875 22 8999999866
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.... ...+++.+. .|+|+|++++..
T Consensus 363 r~g~---------~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 363 RAGL---------HPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp TTCS---------CHHHHHHHH-HHCCSEEEEEES
T ss_pred ccch---------HHHHHHHHH-hcCCCcEEEEEC
Confidence 4322 123444443 589999988875
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-12 Score=104.81 Aligned_cols=113 Identities=15% Similarity=0.213 Sum_probs=82.5
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccccc-CCCc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQ-TGSF 114 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~-~~~f 114 (237)
+..++.........+|||+|||+|.++..+++.+ .+++|+|+|+.+++.++++.....+++++++|+.+++ ++ .++|
T Consensus 18 ~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~-~~~~~~f 95 (245)
T 1yub_A 18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQ-FPNKQRY 95 (245)
T ss_dssp HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTT-CCCSSEE
T ss_pred HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcC-cccCCCc
Confidence 4444544433333489999999999999999987 5999999999999999988765568999999999886 54 3678
Q ss_pred cEEEeccccceeccCCCChHHHHHHH--------------HHHHHhcCCCcEEEEEE
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQML--------------KEVWRVLKDKGVYILVT 157 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l--------------~~~~~~L~pgG~l~~~~ 157 (237)
.|+++.+.+.. ......++ +.+.++|+|||.+.+..
T Consensus 96 -~vv~n~Py~~~------~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 96 -KIVGNIPYHLS------TQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp -EEEEECCSSSC------HHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred -EEEEeCCcccc------HHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 77777654322 12222222 56888999998876644
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.5e-11 Score=100.69 Aligned_cols=99 Identities=12% Similarity=0.227 Sum_probs=76.7
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccc-ccC--------------
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDE-FQT-------------- 111 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~-~~~-------------- 111 (237)
.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|+++++ +..+++|+++|+.+... +..
T Consensus 215 ~~vLDl~cG~G~~~l~la~~~-~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~ 293 (369)
T 3bt7_A 215 GDLLELYCGNGNFSLALARNF-DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS 293 (369)
T ss_dssp SEEEEESCTTSHHHHHHGGGS-SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGG
T ss_pred CEEEEccCCCCHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccccc
Confidence 489999999999999999865 499999999999999999984 34589999999977531 222
Q ss_pred CCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
.+||+|+.+.+-.. +..++.+.|+++|.+++++..+.
T Consensus 294 ~~fD~Vv~dPPr~g-------------~~~~~~~~l~~~g~ivyvsc~p~ 330 (369)
T 3bt7_A 294 YQCETIFVDPPRSG-------------LDSETEKMVQAYPRILYISCNPE 330 (369)
T ss_dssp CCEEEEEECCCTTC-------------CCHHHHHHHTTSSEEEEEESCHH
T ss_pred CCCCEEEECcCccc-------------cHHHHHHHHhCCCEEEEEECCHH
Confidence 37999998755322 23456667778999888886553
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-10 Score=93.99 Aligned_cols=86 Identities=13% Similarity=0.178 Sum_probs=71.3
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccC-CCc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQT-GSF 114 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~-~~f 114 (237)
+..++........ +|||+|||+|.++..+++.+. +++++|+++.+++.+++++.. .+++++++|+.+++ +++ ..+
T Consensus 36 ~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~-~V~avEid~~~~~~l~~~~~~-~~v~vi~~D~l~~~-~~~~~~~ 111 (271)
T 3fut_A 36 LRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGA-EVTAIEKDLRLRPVLEETLSG-LPVRLVFQDALLYP-WEEVPQG 111 (271)
T ss_dssp HHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTTT-SSEEEEESCGGGSC-GGGSCTT
T ss_pred HHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCC-CCEEEEECChhhCC-hhhccCc
Confidence 4556665555556 999999999999999999974 999999999999999999864 68999999999886 443 368
Q ss_pred cEEEeccccce
Q 026558 115 DSVVDKGTLDS 125 (237)
Q Consensus 115 D~I~~~~~l~~ 125 (237)
|.|+++.+++.
T Consensus 112 ~~iv~NlPy~i 122 (271)
T 3fut_A 112 SLLVANLPYHI 122 (271)
T ss_dssp EEEEEEECSSC
T ss_pred cEEEecCcccc
Confidence 99999877654
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.4e-10 Score=95.27 Aligned_cols=108 Identities=12% Similarity=0.147 Sum_probs=83.8
Q ss_pred CcEEEEccCCchhHHHHHHcCC---------------------------------------CeEEEEeCCHHHHHHHHHH
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY---------------------------------------EDVVNVDISSVVIEAMMKK 89 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~---------------------------------------~~~~~vD~s~~~~~~a~~~ 89 (237)
..|||++||+|.+++.++..+. .+++|+|+++.+++.|+++
T Consensus 196 ~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~N 275 (384)
T 3ldg_A 196 KPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARKN 275 (384)
T ss_dssp SCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHH
T ss_pred CeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHHH
Confidence 4899999999999998876431 2599999999999999999
Q ss_pred cC--CC-CCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCC--CcEEEEEEcCCc
Q 026558 90 YS--NR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKD--KGVYILVTYGAP 161 (237)
Q Consensus 90 ~~--~~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~p--gG~l~~~~~~~~ 161 (237)
+. +. ..+++.++|+.+++ . ..+||+|+++.+++.-. ........+.+.+.+.|++ ||.+++++....
T Consensus 276 a~~~gl~~~I~~~~~D~~~l~-~-~~~fD~Iv~NPPYG~rl---~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~ 347 (384)
T 3ldg_A 276 AREVGLEDVVKLKQMRLQDFK-T-NKINGVLISNPPYGERL---LDDKAVDILYNEMGETFAPLKTWSQFILTNDTD 347 (384)
T ss_dssp HHHTTCTTTEEEEECCGGGCC-C-CCCSCEEEECCCCTTTT---SCHHHHHHHHHHHHHHHTTCTTSEEEEEESCTT
T ss_pred HHHcCCCCceEEEECChHHCC-c-cCCcCEEEECCchhhcc---CCHHHHHHHHHHHHHHHhhCCCcEEEEEECCHH
Confidence 84 32 35899999999986 3 45899999998865321 2335666777777777776 999998886443
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.7e-10 Score=96.69 Aligned_cols=108 Identities=15% Similarity=0.170 Sum_probs=80.6
Q ss_pred CcEEEEccCCchhHHHHHHcCC---------------------------------------CeEEEEeCCHHHHHHHHHH
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY---------------------------------------EDVVNVDISSVVIEAMMKK 89 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~---------------------------------------~~~~~vD~s~~~~~~a~~~ 89 (237)
..|||++||+|.+++.++..+. .+++|+|+++.+++.|+++
T Consensus 203 ~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~N 282 (393)
T 3k0b_A 203 RPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQN 282 (393)
T ss_dssp SCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHH
T ss_pred CeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHHH
Confidence 4899999999999998876532 3599999999999999999
Q ss_pred cC--CC-CCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCC--CcEEEEEEcCCc
Q 026558 90 YS--NR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKD--KGVYILVTYGAP 161 (237)
Q Consensus 90 ~~--~~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~p--gG~l~~~~~~~~ 161 (237)
+. +. .++++.++|+.+++ . ..+||+|+++.++..-. ........+.+.+.+.|++ ||.+++.+....
T Consensus 283 a~~~gl~~~I~~~~~D~~~~~-~-~~~fD~Iv~NPPYg~rl---~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~ 354 (393)
T 3k0b_A 283 AVEAGLGDLITFRQLQVADFQ-T-EDEYGVVVANPPYGERL---EDEEAVRQLYREMGIVYKRMPTWSVYVLTSYEL 354 (393)
T ss_dssp HHHTTCTTCSEEEECCGGGCC-C-CCCSCEEEECCCCCCSH---HHHHHHHHHHHHHHHHHHTCTTCEEEEEECCTT
T ss_pred HHHcCCCCceEEEECChHhCC-C-CCCCCEEEECCCCcccc---CCchhHHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence 84 32 35899999999986 3 45899999998764320 1113445556666666655 999988885443
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-10 Score=98.59 Aligned_cols=108 Identities=15% Similarity=0.191 Sum_probs=82.3
Q ss_pred CcEEEEccCCchhHHHHHHcCC---------------------------------------CeEEEEeCCHHHHHHHHHH
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY---------------------------------------EDVVNVDISSVVIEAMMKK 89 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~---------------------------------------~~~~~vD~s~~~~~~a~~~ 89 (237)
.+|||++||+|.+++.++..+. ..++|+|+++.+++.|+++
T Consensus 197 ~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~N 276 (385)
T 3ldu_A 197 RVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIAREN 276 (385)
T ss_dssp SCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHHH
T ss_pred CeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHHH
Confidence 4899999999999999876531 3799999999999999999
Q ss_pred cC--CC-CCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCC--CcEEEEEEcCCc
Q 026558 90 YS--NR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKD--KGVYILVTYGAP 161 (237)
Q Consensus 90 ~~--~~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~p--gG~l~~~~~~~~ 161 (237)
+. +. .++++.++|+.+++ ...+||+|+++.++..-. ........+.+++.+.|++ |+.+++.+....
T Consensus 277 a~~~gl~~~i~~~~~D~~~l~--~~~~~D~Iv~NPPyg~rl---~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~ 348 (385)
T 3ldu_A 277 AEIAGVDEYIEFNVGDATQFK--SEDEFGFIITNPPYGERL---EDKDSVKQLYKELGYAFRKLKNWSYYLITSYED 348 (385)
T ss_dssp HHHHTCGGGEEEEECCGGGCC--CSCBSCEEEECCCCCCSH---HHHHHHHHHHHHHHHHHHTSBSCEEEEEESCTT
T ss_pred HHHcCCCCceEEEECChhhcC--cCCCCcEEEECCCCcCcc---CCHHHHHHHHHHHHHHHhhCCCCEEEEEECCHH
Confidence 84 22 36899999999886 346899999998865321 1124456667777777766 888888885443
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-09 Score=89.73 Aligned_cols=110 Identities=5% Similarity=-0.047 Sum_probs=80.0
Q ss_pred CcEEEEccCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccccc--CCCccEEEeccc
Q 026558 49 QRILIVGCGNSAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQ--TGSFDSVVDKGT 122 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~--~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~--~~~fD~I~~~~~ 122 (237)
.+|||+|||+|..+..+++. +..+++++|+++.+++.++++++ +..++.++++|+.++.... ..+||.|+++.+
T Consensus 104 ~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~D~P 183 (309)
T 2b9e_A 104 SHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPS 183 (309)
T ss_dssp CEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEECCC
T ss_pred CEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEEEcCC
Confidence 49999999999999999885 23599999999999999999985 3457999999998875211 157999999755
Q ss_pred cceec---c--CC--------CCh----HHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 123 LDSLL---C--GS--------NSR----QNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 123 l~~~~---~--~~--------~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
..... - +. ... ..+.++|+.+.+.++ ||+++..|.+
T Consensus 184 cSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs 236 (309)
T 2b9e_A 184 CSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS 236 (309)
T ss_dssp CCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred cCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence 42110 0 00 000 123457888888886 9999988754
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.1e-10 Score=94.01 Aligned_cols=97 Identities=10% Similarity=0.035 Sum_probs=68.9
Q ss_pred CcEEEEccCC------chhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHcCCCCCcEE-EEccccccccccCCCccEEEe
Q 026558 49 QRILIVGCGN------SAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSNRPQLKY-IKMDVRQMDEFQTGSFDSVVD 119 (237)
Q Consensus 49 ~~iLdlG~G~------G~~~~~~~~~-~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~-~~~d~~~~~~~~~~~fD~I~~ 119 (237)
.+|||+|||+ |. ..+++. + ..+++|+|+|+. . .++++ +++|+.+++ + .++||+|++
T Consensus 65 ~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v---~~v~~~i~gD~~~~~-~-~~~fD~Vvs 129 (290)
T 2xyq_A 65 MRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V---SDADSTLIGDCATVH-T-ANKWDLIIS 129 (290)
T ss_dssp CEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B---CSSSEEEESCGGGCC-C-SSCEEEEEE
T ss_pred CEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C---CCCEEEEECccccCC-c-cCcccEEEE
Confidence 3999999955 65 333433 3 259999999997 2 46889 999999876 4 378999999
Q ss_pred cccccee----ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 120 KGTLDSL----LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 120 ~~~l~~~----~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+...+.. ............+++++.++|+|||.+++..+..
T Consensus 130 n~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~ 174 (290)
T 2xyq_A 130 DMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH 174 (290)
T ss_dssp CCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred cCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 7542211 0011223456789999999999999999976544
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.9e-10 Score=97.95 Aligned_cols=98 Identities=15% Similarity=0.081 Sum_probs=77.6
Q ss_pred CcEEEEccCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcC-----------------CCCCcEEEEcccccccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYS-----------------NRPQLKYIKMDVRQMDEFQ 110 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~-----------------~~~~~~~~~~d~~~~~~~~ 110 (237)
.+|||+|||+|..++.+++. +..+++++|+++.+++.++++++ +..+++++++|+.++....
T Consensus 49 ~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~~ 128 (378)
T 2dul_A 49 KIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAER 128 (378)
T ss_dssp SEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHS
T ss_pred CEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHhc
Confidence 39999999999999999987 44589999999999999999874 2234889999998764222
Q ss_pred CCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 111 ~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+.||+|+.+.. .. ...+++.+.+.|++||++++..
T Consensus 129 ~~~fD~I~lDP~-~~----------~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 129 HRYFHFIDLDPF-GS----------PMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp TTCEEEEEECCS-SC----------CHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCCCEEEeCCC-CC----------HHHHHHHHHHhcCCCCEEEEEe
Confidence 457999997642 21 2578889999999999877653
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.3e-10 Score=91.38 Aligned_cols=111 Identities=19% Similarity=0.352 Sum_probs=88.1
Q ss_pred CCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC-------CCCCcEEEEccccccccccCCCcc
Q 026558 44 VPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS-------NRPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 44 ~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~-------~~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
.++.+++||-||.|.|..+.++++.. ..+++.+||++.+++.+++.+. ..++++++.+|+..+.....++||
T Consensus 80 ~~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yD 159 (294)
T 3o4f_A 80 AHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFD 159 (294)
T ss_dssp HSSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEE
T ss_pred hCCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCC
Confidence 34555599999999999999999875 4599999999999999998862 246899999999887645678999
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+|+.+.+ +.. +....-....+++.+.++|+|||+++.+.
T Consensus 160 vIi~D~~-dp~--~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 160 VIISDCT-DPI--GPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp EEEESCC-CCC--CTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEeCC-CcC--CCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence 9999753 211 11122345678999999999999999875
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.4e-10 Score=97.51 Aligned_cols=98 Identities=18% Similarity=0.148 Sum_probs=78.3
Q ss_pred CcEEEEccCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHcC--CCCC--cEEEEcccccccc-ccCCCccEEEecc
Q 026558 49 QRILIVGCGNSAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYS--NRPQ--LKYIKMDVRQMDE-FQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~--~~~~~~~vD~s~~~~~~a~~~~~--~~~~--~~~~~~d~~~~~~-~~~~~fD~I~~~~ 121 (237)
.+|||++||+|.+++.++.. +..+++++|+++.+++.++++++ +..+ ++++++|+.+... ...+.||+|+++.
T Consensus 54 ~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lDP 133 (392)
T 3axs_A 54 VKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLDP 133 (392)
T ss_dssp EEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEECC
T ss_pred CEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEECC
Confidence 39999999999999999985 33589999999999999999985 3334 8999999987642 1246799999985
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
... ...+++.+.+.|++||++++..
T Consensus 134 -~g~----------~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 134 -FGT----------PVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp -SSC----------CHHHHHHHHHHEEEEEEEEEEE
T ss_pred -CcC----------HHHHHHHHHHHhCCCCEEEEEe
Confidence 221 2458889999999999877754
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=99.07 E-value=3e-10 Score=101.03 Aligned_cols=123 Identities=8% Similarity=-0.016 Sum_probs=87.1
Q ss_pred hHHHHHhhCCC-CCCcEEEEccCCchhHHHHHHcC-------------------CCeEEEEeCCHHHHHHHHHHc--CCC
Q 026558 36 LAPLIKLYVPS-HHQRILIVGCGNSAFSEGMVDDG-------------------YEDVVNVDISSVVIEAMMKKY--SNR 93 (237)
Q Consensus 36 ~~~~l~~~~~~-~~~~iLdlG~G~G~~~~~~~~~~-------------------~~~~~~vD~s~~~~~~a~~~~--~~~ 93 (237)
+..++...+.+ ...+|+|++||+|.++..+++.. ...++|+|+++.+++.|+.++ .+.
T Consensus 157 iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi 236 (541)
T 2ar0_A 157 LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI 236 (541)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCC
Confidence 44444444333 33499999999999998876541 137999999999999999886 233
Q ss_pred CC-----cEEEEccccccccccCCCccEEEeccccceeccCC-------CChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 94 PQ-----LKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGS-------NSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 94 ~~-----~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~-------~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.+ ..+.++|....+.....+||+|+++.++....... ........++..+.+.|+|||++.++..
T Consensus 237 ~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 237 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp CCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 33 78899998765423457899999998876431100 0012234789999999999999988763
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-09 Score=88.15 Aligned_cols=84 Identities=12% Similarity=0.179 Sum_probs=63.3
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCC-cc
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGS-FD 115 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~-fD 115 (237)
..++.........+|||+|||+|.++..+++.+..+++++|+++.+++.++++ ...+++++++|+.+++ +++.. ..
T Consensus 21 ~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~--~~~~v~~i~~D~~~~~-~~~~~~~~ 97 (249)
T 3ftd_A 21 KKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI--GDERLEVINEDASKFP-FCSLGKEL 97 (249)
T ss_dssp HHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS--CCTTEEEECSCTTTCC-GGGSCSSE
T ss_pred HHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc--cCCCeEEEEcchhhCC-hhHccCCc
Confidence 44444443333349999999999999999998645999999999999999988 3468999999999876 43311 23
Q ss_pred EEEecccc
Q 026558 116 SVVDKGTL 123 (237)
Q Consensus 116 ~I~~~~~l 123 (237)
.|+++.+.
T Consensus 98 ~vv~NlPy 105 (249)
T 3ftd_A 98 KVVGNLPY 105 (249)
T ss_dssp EEEEECCT
T ss_pred EEEEECch
Confidence 66666554
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.7e-09 Score=97.69 Aligned_cols=112 Identities=13% Similarity=0.105 Sum_probs=79.3
Q ss_pred CcEEEEccCCchhHHHHHHcC-------------------------------------------CCeEEEEeCCHHHHHH
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-------------------------------------------YEDVVNVDISSVVIEA 85 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-------------------------------------------~~~~~~vD~s~~~~~~ 85 (237)
..|||++||+|.+++.++..+ ...++|+|+++.+++.
T Consensus 192 ~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~~ 271 (703)
T 3v97_A 192 TPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQR 271 (703)
T ss_dssp SCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHHH
T ss_pred CeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHHHH
Confidence 489999999999999877541 1379999999999999
Q ss_pred HHHHcC--CCC-CcEEEEcccccccc-ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 86 MMKKYS--NRP-QLKYIKMDVRQMDE-FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 86 a~~~~~--~~~-~~~~~~~d~~~~~~-~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
|++++. +.. .+.+.++|+.++.. ...++||+|+++.++..-..........-..+.++.+.+.|||.+++++...
T Consensus 272 A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ilt~~~ 350 (703)
T 3v97_A 272 ARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFSASP 350 (703)
T ss_dssp HHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEEESCH
T ss_pred HHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEEeCCH
Confidence 999984 322 48999999988741 2234899999998875321111111223334555566667899999987543
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-09 Score=88.44 Aligned_cols=84 Identities=13% Similarity=0.222 Sum_probs=63.7
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCe----EEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccC
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYED----VVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQT 111 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~----~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~ 111 (237)
+..++.........+|||||||+|.++..+++.+. . ++++|+++.+++.++++. ..+++++++|+.+++ +++
T Consensus 31 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~-~~~~~V~avDid~~~l~~a~~~~--~~~v~~i~~D~~~~~-~~~ 106 (279)
T 3uzu_A 31 IDAIVAAIRPERGERMVEIGPGLGALTGPVIARLA-TPGSPLHAVELDRDLIGRLEQRF--GELLELHAGDALTFD-FGS 106 (279)
T ss_dssp HHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHC-BTTBCEEEEECCHHHHHHHHHHH--GGGEEEEESCGGGCC-GGG
T ss_pred HHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCC-CcCCeEEEEECCHHHHHHHHHhc--CCCcEEEECChhcCC-hhH
Confidence 44455554333334999999999999999998864 4 999999999999999984 468999999998876 332
Q ss_pred C------CccEEEecccc
Q 026558 112 G------SFDSVVDKGTL 123 (237)
Q Consensus 112 ~------~fD~I~~~~~l 123 (237)
- ..+.|+++.++
T Consensus 107 ~~~~~~~~~~~vv~NlPY 124 (279)
T 3uzu_A 107 IARPGDEPSLRIIGNLPY 124 (279)
T ss_dssp GSCSSSSCCEEEEEECCH
T ss_pred hcccccCCceEEEEccCc
Confidence 1 23467776554
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.7e-09 Score=87.03 Aligned_cols=84 Identities=15% Similarity=0.220 Sum_probs=62.7
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCe--EEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccC---
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYED--VVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQT--- 111 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~--~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~--- 111 (237)
..++.........+|||+|||+|.++. +.. + .+ ++++|+++.+++.+++++...++++++++|+.+++ +++
T Consensus 11 ~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~-~~~~~~ 86 (252)
T 1qyr_A 11 DSIVSAINPQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFN-FGELAE 86 (252)
T ss_dssp HHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCC-HHHHHH
T ss_pred HHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCC-HHHhhc
Confidence 444444433333489999999999999 654 4 36 99999999999999998865568999999998865 321
Q ss_pred --CCccEEEeccccc
Q 026558 112 --GSFDSVVDKGTLD 124 (237)
Q Consensus 112 --~~fD~I~~~~~l~ 124 (237)
+..|.|+++.+..
T Consensus 87 ~~~~~~~vvsNlPY~ 101 (252)
T 1qyr_A 87 KMGQPLRVFGNLPYN 101 (252)
T ss_dssp HHTSCEEEEEECCTT
T ss_pred ccCCceEEEECCCCC
Confidence 2457888876653
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-09 Score=90.02 Aligned_cols=87 Identities=16% Similarity=0.272 Sum_probs=67.3
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCC-CCcEEEEcccccccc-cc--
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDE-FQ-- 110 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~-~~-- 110 (237)
+...+..+...+..+|||+|||+|..+..+++.. ..+++|+|+|+.+++.|++++... .++.++++|+.+++. +.
T Consensus 15 l~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~ 94 (301)
T 1m6y_A 15 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTL 94 (301)
T ss_dssp HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHT
T ss_pred HHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhc
Confidence 3445555544343599999999999999999885 359999999999999999998532 589999999988752 11
Q ss_pred -CCCccEEEeccc
Q 026558 111 -TGSFDSVVDKGT 122 (237)
Q Consensus 111 -~~~fD~I~~~~~ 122 (237)
..+||.|+++..
T Consensus 95 g~~~~D~Vl~D~g 107 (301)
T 1m6y_A 95 GIEKVDGILMDLG 107 (301)
T ss_dssp TCSCEEEEEEECS
T ss_pred CCCCCCEEEEcCc
Confidence 157999998643
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.96 E-value=5.9e-09 Score=92.56 Aligned_cols=111 Identities=12% Similarity=0.054 Sum_probs=82.8
Q ss_pred CcEEEEccCCchhHHHHHHcC----CCeEEEEeCCHHHHHHHHHHc--CCC--CCcEEEEcccccc--ccccCCCccEEE
Q 026558 49 QRILIVGCGNSAFSEGMVDDG----YEDVVNVDISSVVIEAMMKKY--SNR--PQLKYIKMDVRQM--DEFQTGSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~----~~~~~~vD~s~~~~~~a~~~~--~~~--~~~~~~~~d~~~~--~~~~~~~fD~I~ 118 (237)
.+|+|.+||+|.++..+++.- ...++|+|+++.+++.|+.++ .+. .++.+.++|.... +.....+||+|+
T Consensus 223 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~Iv 302 (542)
T 3lkd_A 223 FTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDGVL 302 (542)
T ss_dssp CEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSEEE
T ss_pred CEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccEEE
Confidence 499999999999998887762 348999999999999999886 333 3578999998765 434567899999
Q ss_pred eccccceeccCC---------------CC-hHHHHHHHHHHHHhcC-CCcEEEEEEcC
Q 026558 119 DKGTLDSLLCGS---------------NS-RQNATQMLKEVWRVLK-DKGVYILVTYG 159 (237)
Q Consensus 119 ~~~~l~~~~~~~---------------~~-~~~~~~~l~~~~~~L~-pgG~l~~~~~~ 159 (237)
++.++..-.... .+ ...-..++..+.+.|+ +||++.++...
T Consensus 303 aNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~ 360 (542)
T 3lkd_A 303 MNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPH 360 (542)
T ss_dssp ECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEET
T ss_pred ecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecc
Confidence 998875321100 00 0011258999999999 99999887743
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.94 E-value=5.2e-09 Score=81.09 Aligned_cols=109 Identities=11% Similarity=0.036 Sum_probs=78.9
Q ss_pred CcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--C---CCCcEEEEcccccc-
Q 026558 33 YPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--N---RPQLKYIKMDVRQM- 106 (237)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~---~~~~~~~~~d~~~~- 106 (237)
.....+++...+.+.. +|||+|| |..++.+++....+++.+|.+++..+.|+++++ + ..+++++.+|+.+.
T Consensus 17 ~~~~~~~L~~~l~~a~-~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~ 93 (202)
T 3cvo_A 17 PPAEAEALRMAYEEAE-VILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTG 93 (202)
T ss_dssp CHHHHHHHHHHHHHCS-EEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBC
T ss_pred CHHHHHHHHHHhhCCC-EEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhh
Confidence 3334666666555454 9999998 567777877523599999999999999999884 2 34789999997542
Q ss_pred --------------cc-------c-cCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 107 --------------DE-------F-QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 107 --------------~~-------~-~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
+. . ..+.||+|+..+-. ...++..+.+.|+|||++++-
T Consensus 94 ~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k------------~~~~~~~~l~~l~~GG~Iv~D 153 (202)
T 3cvo_A 94 DWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRF------------RVGCALATAFSITRPVTLLFD 153 (202)
T ss_dssp GGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSS------------HHHHHHHHHHHCSSCEEEEET
T ss_pred cccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCC------------chhHHHHHHHhcCCCeEEEEe
Confidence 11 1 13689999987531 236677788999999999663
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.93 E-value=1e-09 Score=88.74 Aligned_cols=76 Identities=11% Similarity=-0.015 Sum_probs=61.0
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCH-------HHHHHHHHHcCC--C-CCcEEEEccccccc-cccC--CCcc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISS-------VVIEAMMKKYSN--R-PQLKYIKMDVRQMD-EFQT--GSFD 115 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~-------~~~~~a~~~~~~--~-~~~~~~~~d~~~~~-~~~~--~~fD 115 (237)
.+|||+|||+|.++..+++.+. +|+++|+|+ .+++.|+++... . .+++++++|+.++. .+++ ++||
T Consensus 85 ~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~fD 163 (258)
T 2r6z_A 85 PTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKPD 163 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCCCS
T ss_pred CeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCCcc
Confidence 3899999999999999999864 999999999 999999877531 1 24899999998753 2444 7899
Q ss_pred EEEeccccce
Q 026558 116 SVVDKGTLDS 125 (237)
Q Consensus 116 ~I~~~~~l~~ 125 (237)
+|+++.++.+
T Consensus 164 ~V~~dP~~~~ 173 (258)
T 2r6z_A 164 IVYLDPMYPE 173 (258)
T ss_dssp EEEECCCC--
T ss_pred EEEECCCCCC
Confidence 9999876654
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.9e-09 Score=95.91 Aligned_cols=123 Identities=11% Similarity=-0.018 Sum_probs=85.0
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC----------------CCeEEEEeCCHHHHHHHHHHcC--CC-CCc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG----------------YEDVVNVDISSVVIEAMMKKYS--NR-PQL 96 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~----------------~~~~~~vD~s~~~~~~a~~~~~--~~-~~~ 96 (237)
+.+++...+.+...+|||.+||+|.+++.+++.. ...++|+|+++.+++.|+.++. +. .++
T Consensus 233 Vv~lmv~ll~p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i 312 (544)
T 3khk_A 233 IVTLIVEMLEPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNF 312 (544)
T ss_dssp HHHHHHHHHCCCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBC
T ss_pred HHHHHHHHHhcCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCccc
Confidence 4444444444443499999999999988875421 2389999999999999998862 21 234
Q ss_pred EEEEccccccccccCCCccEEEeccccceecc----------------------CCCChHHHHHHHHHHHHhcCCCcEEE
Q 026558 97 KYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC----------------------GSNSRQNATQMLKEVWRVLKDKGVYI 154 (237)
Q Consensus 97 ~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~----------------------~~~~~~~~~~~l~~~~~~L~pgG~l~ 154 (237)
.+.++|....+.+...+||+|+++.++..--. ..........++..+.+.|+|||++.
T Consensus 313 ~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a 392 (544)
T 3khk_A 313 GKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMA 392 (544)
T ss_dssp CSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEE
T ss_pred ceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEE
Confidence 44778876655455688999999988763100 00001112368999999999999988
Q ss_pred EEEc
Q 026558 155 LVTY 158 (237)
Q Consensus 155 ~~~~ 158 (237)
++..
T Consensus 393 iVlP 396 (544)
T 3khk_A 393 LLLA 396 (544)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8764
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.6e-09 Score=92.67 Aligned_cols=79 Identities=6% Similarity=0.039 Sum_probs=64.1
Q ss_pred hCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC----CCCCcEEEEcccccc-ccccCCCccEE
Q 026558 43 YVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS----NRPQLKYIKMDVRQM-DEFQTGSFDSV 117 (237)
Q Consensus 43 ~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~----~~~~~~~~~~d~~~~-~~~~~~~fD~I 117 (237)
.+.++. +|||+|||+|..+..+++.+. +|+++|+|+.+++.|++++. +..+++++++|+.+. +....++||+|
T Consensus 90 ~l~~g~-~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV 167 (410)
T 3ll7_A 90 FIREGT-KVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYI 167 (410)
T ss_dssp GSCTTC-EEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEE
T ss_pred hcCCCC-EEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEE
Confidence 333344 999999999999999998875 99999999999999999985 335799999999885 31234689999
Q ss_pred Eecccc
Q 026558 118 VDKGTL 123 (237)
Q Consensus 118 ~~~~~l 123 (237)
+++.+.
T Consensus 168 ~lDPPr 173 (410)
T 3ll7_A 168 YVDPAR 173 (410)
T ss_dssp EECCEE
T ss_pred EECCCC
Confidence 998654
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.3e-09 Score=86.11 Aligned_cols=120 Identities=13% Similarity=0.053 Sum_probs=76.0
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSF 114 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~f 114 (237)
+.++.+........+|||||||+|.++..+++. +...+.++|++-.+............++.....++.... +..+.|
T Consensus 63 L~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~-l~~~~~ 141 (277)
T 3evf_A 63 LRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHR-LEPVKC 141 (277)
T ss_dssp HHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTT-SCCCCC
T ss_pred HHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehh-cCCCCc
Confidence 455555544344349999999999999988876 444788888874321000000000114555666654333 667899
Q ss_pred cEEEeccccceeccCCCChHH--HHHHHHHHHHhcCCC-cEEEEEEcC
Q 026558 115 DSVVDKGTLDSLLCGSNSRQN--ATQMLKEVWRVLKDK-GVYILVTYG 159 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~--~~~~l~~~~~~L~pg-G~l~~~~~~ 159 (237)
|+|+|+...+ . +....+. ...+|+.+.++|+|| |.|++-.+.
T Consensus 142 DlVlsD~apn-s--G~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 142 DTLLCDIGES-S--SSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp SEEEECCCCC-C--SCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred cEEEecCccC-c--CchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 9999998665 2 2111122 224578899999999 999998777
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.80 E-value=3e-08 Score=90.55 Aligned_cols=111 Identities=13% Similarity=0.016 Sum_probs=77.9
Q ss_pred CcEEEEccCCchhHHHHHHcC----CCeEEEEeCCHHHHHHH--HHHcCC------CCCcEEEEccccccccccCCCccE
Q 026558 49 QRILIVGCGNSAFSEGMVDDG----YEDVVNVDISSVVIEAM--MKKYSN------RPQLKYIKMDVRQMDEFQTGSFDS 116 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~----~~~~~~vD~s~~~~~~a--~~~~~~------~~~~~~~~~d~~~~~~~~~~~fD~ 116 (237)
.+|||+|||+|.++..+++.. ..+++|+|+++.+++.| +.+... .....+...|+.........+||+
T Consensus 323 ~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kFDV 402 (878)
T 3s1s_A 323 EVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANVSV 402 (878)
T ss_dssp CEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTEEE
T ss_pred CEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCCCE
Confidence 499999999999999988764 24799999999999999 554421 112355666666543244678999
Q ss_pred EEeccccceeccC----------------------CCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 117 VVDKGTLDSLLCG----------------------SNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 117 I~~~~~l~~~~~~----------------------~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
|+++.++...... .........+++.+.+.|++||++.++...
T Consensus 403 VIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~ 467 (878)
T 3s1s_A 403 VVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPK 467 (878)
T ss_dssp EEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEET
T ss_pred EEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEECh
Confidence 9999887321000 000012345789999999999999998743
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.6e-08 Score=83.89 Aligned_cols=109 Identities=20% Similarity=0.226 Sum_probs=83.0
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC----------CCCcEEEEcccccccc---ccCCCcc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN----------RPQLKYIKMDVRQMDE---FQTGSFD 115 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~----------~~~~~~~~~d~~~~~~---~~~~~fD 115 (237)
++||-||.|.|..+.++++....+++.+||++.+++.|++.+.. .++++++..|+..+.. -..++||
T Consensus 207 krVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yD 286 (381)
T 3c6k_A 207 KDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFD 286 (381)
T ss_dssp CEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEE
T ss_pred CeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCcee
Confidence 49999999999999999988767999999999999999998631 1357899999976531 1346899
Q ss_pred EEEeccccceeccC---CCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 116 SVVDKGTLDSLLCG---SNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 116 ~I~~~~~l~~~~~~---~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+|+.+.+-.....+ .........+++.+.++|+|||+++.+.
T Consensus 287 vIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 287 YVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp EEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 99987432111111 1123456789999999999999998865
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=3.3e-08 Score=83.32 Aligned_cols=112 Identities=16% Similarity=0.168 Sum_probs=85.2
Q ss_pred CcEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcC--------CCCCcEEEEccccccccccCCCccEEEe
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS--------NRPQLKYIKMDVRQMDEFQTGSFDSVVD 119 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~--------~~~~~~~~~~d~~~~~~~~~~~fD~I~~ 119 (237)
.+|||+++|.|.-+..+++.+. ..++++|+++.-++.+++++. ...++.+...|...++....+.||.|++
T Consensus 150 ~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~VLl 229 (359)
T 4fzv_A 150 DIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRVLV 229 (359)
T ss_dssp EEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEEEEEE
T ss_pred CEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCCEEEE
Confidence 4999999999999999998763 379999999999998887763 1246788889998876556788999999
Q ss_pred cccccee----ccCCC------Ch-------HHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 120 KGTLDSL----LCGSN------SR-------QNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 120 ~~~l~~~----~~~~~------~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+.++... .-..+ .. ..+.++|..+.+.|||||+++..|.+-
T Consensus 230 DaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl 287 (359)
T 4fzv_A 230 DVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL 287 (359)
T ss_dssp ECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred CCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence 8765321 00000 01 234578999999999999999988643
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.77 E-value=4.7e-09 Score=84.66 Aligned_cols=76 Identities=12% Similarity=-0.032 Sum_probs=58.0
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHc-------CC---C-CCcEEEEccccccccccCCCccEE
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKY-------SN---R-PQLKYIKMDVRQMDEFQTGSFDSV 117 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~-------~~---~-~~~~~~~~d~~~~~~~~~~~fD~I 117 (237)
.+|||+|||+|..+..+++.+. +|+++|+++.+.+.+++++ .. . .+++++++|+.++.......||+|
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV 168 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred CEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCEE
Confidence 3999999999999999999875 8999999998755555443 11 1 368899999987532223479999
Q ss_pred Eeccccce
Q 026558 118 VDKGTLDS 125 (237)
Q Consensus 118 ~~~~~l~~ 125 (237)
+++.++.+
T Consensus 169 ~lDP~y~~ 176 (258)
T 2oyr_A 169 YLDPMFPH 176 (258)
T ss_dssp EECCCCCC
T ss_pred EEcCCCCC
Confidence 99977643
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.74 E-value=7.2e-09 Score=83.40 Aligned_cols=120 Identities=11% Similarity=0.024 Sum_probs=75.3
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSF 114 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~f 114 (237)
+.++.+...-....+|||||||+|.++..+++. +...++|+|++..+...+........++.....++.... ++..++
T Consensus 79 L~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~-l~~~~~ 157 (282)
T 3gcz_A 79 LRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFN-MEVIPG 157 (282)
T ss_dssp HHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGG-SCCCCC
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhh-cCCCCc
Confidence 555555554444449999999999999988854 444889999986532111110000123344443332222 457899
Q ss_pred cEEEeccccceeccCCCChHH--HHHHHHHHHHhcCCC--cEEEEEEcC
Q 026558 115 DSVVDKGTLDSLLCGSNSRQN--ATQMLKEVWRVLKDK--GVYILVTYG 159 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~--~~~~l~~~~~~L~pg--G~l~~~~~~ 159 (237)
|+|+|+...+ . +....+. ...+|+-+.++|+|| |.|++-.+.
T Consensus 158 DvVLSDmApn-s--G~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 158 DTLLCDIGES-S--PSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp SEEEECCCCC-C--SCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred CEEEecCccC-C--CChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 9999998766 2 2211122 224688889999999 999998877
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.63 E-value=8.4e-08 Score=86.36 Aligned_cols=99 Identities=16% Similarity=0.183 Sum_probs=71.8
Q ss_pred cEEEEccCCchhHHHHHHc----C----------CCeEEEEeCCHHHHHHHHHHcC-C-CCCcEEEEcccccccccc---
Q 026558 50 RILIVGCGNSAFSEGMVDD----G----------YEDVVNVDISSVVIEAMMKKYS-N-RPQLKYIKMDVRQMDEFQ--- 110 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~----~----------~~~~~~vD~s~~~~~~a~~~~~-~-~~~~~~~~~d~~~~~~~~--- 110 (237)
.|||+|||+|.++...+.. + ..+|++||-|+.++..++.+.. + ...+.++.+|++++. .+
T Consensus 412 VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~-lp~~~ 490 (745)
T 3ua3_A 412 VIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLP-GIAKD 490 (745)
T ss_dssp EEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHH-HHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcc-ccccc
Confidence 7999999999997543221 1 1399999999987766665543 2 246999999999986 43
Q ss_pred --CCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEE
Q 026558 111 --TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (237)
Q Consensus 111 --~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 154 (237)
.+++|+|+|-.. .++ ...+....+|..+.+.|+|||+++
T Consensus 491 ~~~ekVDIIVSElm-Gsf----l~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 491 RGFEQPDIIVSELL-GSF----GDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp TTCCCCSEEEECCC-BTT----BGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred CCCCcccEEEEecc-ccc----cchhccHHHHHHHHHhCCCCcEEE
Confidence 588999999632 332 112445668888899999999865
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.63 E-value=6.3e-08 Score=70.31 Aligned_cols=98 Identities=16% Similarity=0.124 Sum_probs=67.8
Q ss_pred ChHHHHHhhCCCCCCcEEEEccCCc-hhHHHHHH-cCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccC-
Q 026558 35 SLAPLIKLYVPSHHQRILIVGCGNS-AFSEGMVD-DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQT- 111 (237)
Q Consensus 35 ~~~~~l~~~~~~~~~~iLdlG~G~G-~~~~~~~~-~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~- 111 (237)
.+...+......+. +|||+|||+| ..+..+++ .+. .|+++|+++.+++ +++.|+.+.. ...
T Consensus 24 ~LaeYI~~~~~~~~-rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~-------------~v~dDiF~P~-~~~Y 87 (153)
T 2k4m_A 24 DLAVYIIRCSGPGT-RVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG-------------IVRDDITSPR-MEIY 87 (153)
T ss_dssp HHHHHHHHHSCSSS-EEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT-------------EECCCSSSCC-HHHH
T ss_pred HHHHHHHhcCCCCC-cEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc-------------eEEccCCCCc-cccc
Confidence 35666666665555 9999999999 69999997 665 8999999996655 7889998754 221
Q ss_pred CCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
..||+|.+..+ +......+-++.+.+ |.-+++..+..
T Consensus 88 ~~~DLIYsirP----------P~El~~~i~~lA~~v--~adliI~pL~~ 124 (153)
T 2k4m_A 88 RGAALIYSIRP----------PAEIHSSLMRVADAV--GARLIIKPLTG 124 (153)
T ss_dssp TTEEEEEEESC----------CTTTHHHHHHHHHHH--TCEEEEECBTT
T ss_pred CCcCEEEEcCC----------CHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 58999977543 233344444444444 35677766433
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=4.6e-07 Score=76.81 Aligned_cols=113 Identities=14% Similarity=0.053 Sum_probs=75.2
Q ss_pred cEEEEccCCchhHHHHHHc------------------CCCeEEEEeCC-----------HHHHHHHHHHcCCCCCcEEEE
Q 026558 50 RILIVGCGNSAFSEGMVDD------------------GYEDVVNVDIS-----------SVVIEAMMKKYSNRPQLKYIK 100 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~------------------~~~~~~~vD~s-----------~~~~~~a~~~~~~~~~~~~~~ 100 (237)
+|+|+||++|..+..+... ...+++..|+- +...+.+++......+--|+.
T Consensus 55 ~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f~~ 134 (384)
T 2efj_A 55 KVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCLIG 134 (384)
T ss_dssp EEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEEEE
T ss_pred EEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceEEE
Confidence 8999999999988876553 11267788886 555555444332112335555
Q ss_pred ccccccc--cccCCCccEEEeccccceeccCCCC---------------------h-----------HHHHHHHHHHHHh
Q 026558 101 MDVRQMD--EFQTGSFDSVVDKGTLDSLLCGSNS---------------------R-----------QNATQMLKEVWRV 146 (237)
Q Consensus 101 ~d~~~~~--~~~~~~fD~I~~~~~l~~~~~~~~~---------------------~-----------~~~~~~l~~~~~~ 146 (237)
+....+- .|+.+++|+|+++.+|||+..-+.. + .+...+|+...+.
T Consensus 135 gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~e 214 (384)
T 2efj_A 135 AMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEE 214 (384)
T ss_dssp ECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5443321 2789999999999999997321111 1 1334458888999
Q ss_pred cCCCcEEEEEEcCCch
Q 026558 147 LKDKGVYILVTYGAPI 162 (237)
Q Consensus 147 L~pgG~l~~~~~~~~~ 162 (237)
|+|||++++.......
T Consensus 215 L~pGG~mvl~~~gr~~ 230 (384)
T 2efj_A 215 LISRGRMLLTFICKED 230 (384)
T ss_dssp EEEEEEEEEEEECCCT
T ss_pred hccCCeEEEEEecCCC
Confidence 9999999998876543
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.55 E-value=3e-07 Score=77.84 Aligned_cols=111 Identities=15% Similarity=0.148 Sum_probs=73.8
Q ss_pred cEEEEccCCchhHHHHHH--------c--------CCCeEEEEeCCHHHHHHHHHHcCCCC--------------CcEEE
Q 026558 50 RILIVGCGNSAFSEGMVD--------D--------GYEDVVNVDISSVVIEAMMKKYSNRP--------------QLKYI 99 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~--------~--------~~~~~~~vD~s~~~~~~a~~~~~~~~--------------~~~~~ 99 (237)
+|+|+|||+|..+..++. . ...+++..|+-....+..=+.+.... +-.|+
T Consensus 55 ~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~f~ 134 (374)
T 3b5i_A 55 TAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSYFV 134 (374)
T ss_dssp EEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCSEE
T ss_pred EEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCceEE
Confidence 899999999998887632 1 12378888887766655544443210 11232
Q ss_pred Ecc---ccccccccCCCccEEEeccccceeccCCCC-------------------------------hHHHHHHHHHHHH
Q 026558 100 KMD---VRQMDEFQTGSFDSVVDKGTLDSLLCGSNS-------------------------------RQNATQMLKEVWR 145 (237)
Q Consensus 100 ~~d---~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~-------------------------------~~~~~~~l~~~~~ 145 (237)
.+. +-.-. ++++++|+|+|+.+|||+..-+.. ..+...+|+...+
T Consensus 135 ~gvpgSFy~rl-fP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~ 213 (374)
T 3b5i_A 135 AGVPGSFYRRL-FPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAA 213 (374)
T ss_dssp EEEESCTTSCC-SCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecChhhhccc-CCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 22222 789999999999999998311100 1256678999999
Q ss_pred hcCCCcEEEEEEcCCc
Q 026558 146 VLKDKGVYILVTYGAP 161 (237)
Q Consensus 146 ~L~pgG~l~~~~~~~~ 161 (237)
.|+|||++++......
T Consensus 214 eL~pGG~mvl~~~gr~ 229 (374)
T 3b5i_A 214 EVKRGGAMFLVCLGRT 229 (374)
T ss_dssp HEEEEEEEEEEEEECC
T ss_pred HhCCCCEEEEEEecCC
Confidence 9999999999886553
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.7e-07 Score=84.21 Aligned_cols=97 Identities=18% Similarity=0.283 Sum_probs=68.8
Q ss_pred cEEEEccCCchhHHHHHHc---CC--CeEEEEeCCHHHHHHHHHHcC---CCCCcEEEEccccccccccCCCccEEEecc
Q 026558 50 RILIVGCGNSAFSEGMVDD---GY--EDVVNVDISSVVIEAMMKKYS---NRPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~---~~--~~~~~vD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~ 121 (237)
.|||+|||+|.+....++. +. .+|++||-|+.+. .+++..+ -...++++.+|++++. . .+++|+|+|-
T Consensus 360 vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~-~a~~~v~~N~~~dkVtVI~gd~eev~-L-PEKVDIIVSE- 435 (637)
T 4gqb_A 360 VLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAV-VTLENWQFEEWGSQVTVVSSDMREWV-A-PEKADIIVSE- 435 (637)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHH-HHHHHHHHHTTGGGEEEEESCTTTCC-C-SSCEEEEECC-
T ss_pred EEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHH-HHHHHHHhccCCCeEEEEeCcceecc-C-CcccCEEEEE-
Confidence 7999999999995554443 32 2789999998554 4444442 2347999999999986 3 4789999995
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 154 (237)
.+++...+ +....++....|.|||||+++
T Consensus 436 wMG~fLl~----E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 436 LLGSFADN----ELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CCBTTBGG----GCHHHHHHHHGGGEEEEEEEE
T ss_pred cCcccccc----cCCHHHHHHHHHhcCCCcEEc
Confidence 33332111 233468888899999999875
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.49 E-value=7.4e-07 Score=72.05 Aligned_cols=82 Identities=12% Similarity=0.250 Sum_probs=66.6
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc----ccC
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE----FQT 111 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~----~~~ 111 (237)
+.+.+..+...+++.+||.+||.|..+..+++.+ .+++|+|.++.+++.|++ +.. +++.++++|+.++.. ...
T Consensus 11 l~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~~-g~VigiD~Dp~Ai~~A~~-L~~-~rv~lv~~~f~~l~~~L~~~g~ 87 (285)
T 1wg8_A 11 YQEALDLLAVRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKG-LHL-PGLTVVQGNFRHLKRHLAALGV 87 (285)
T ss_dssp HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHH-TCC-TTEEEEESCGGGHHHHHHHTTC
T ss_pred HHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHCC-CEEEEEeCCHHHHHHHHh-hcc-CCEEEEECCcchHHHHHHHcCC
Confidence 4566666655444599999999999999999984 499999999999999999 765 689999999988753 123
Q ss_pred CCccEEEec
Q 026558 112 GSFDSVVDK 120 (237)
Q Consensus 112 ~~fD~I~~~ 120 (237)
+++|.|+.+
T Consensus 88 ~~vDgIL~D 96 (285)
T 1wg8_A 88 ERVDGILAD 96 (285)
T ss_dssp SCEEEEEEE
T ss_pred CCcCEEEeC
Confidence 579999974
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=3.1e-07 Score=74.38 Aligned_cols=119 Identities=12% Similarity=0.041 Sum_probs=72.4
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccccCCC
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~ 113 (237)
+.++....+..+..+||||||++|.++..+++. +...+.|+|+...+...... ... ..++.....++.... +..+.
T Consensus 70 L~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~~~iv~~~~~~di~~-l~~~~ 147 (300)
T 3eld_A 70 IRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLGWNIVKFKDKSNVFT-MPTEP 147 (300)
T ss_dssp HHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTGGGEEEECSCCTTT-SCCCC
T ss_pred HHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccCCceEEeecCceeee-cCCCC
Confidence 444444433333349999999999999999986 44478899997532100000 000 113333332222122 45678
Q ss_pred ccEEEeccccceeccCCCChH--HHHHHHHHHHHhcCCC-cEEEEEEcC
Q 026558 114 FDSVVDKGTLDSLLCGSNSRQ--NATQMLKEVWRVLKDK-GVYILVTYG 159 (237)
Q Consensus 114 fD~I~~~~~l~~~~~~~~~~~--~~~~~l~~~~~~L~pg-G~l~~~~~~ 159 (237)
+|+|+|+...+ . +....+ ....+|+-+.++|+|| |.|++-.+.
T Consensus 148 ~DlVlsD~APn-s--G~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 148 SDTLLCDIGES-S--SNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp CSEEEECCCCC-C--SSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred cCEEeecCcCC-C--CCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 99999987765 2 221112 2234588889999999 999998877
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.47 E-value=3.9e-07 Score=74.24 Aligned_cols=101 Identities=12% Similarity=0.123 Sum_probs=76.3
Q ss_pred CcEEEEccCCchhHHHHHHc----C--CCeEEEEeCCHH--------------------------HHHHHHHHcC--C--
Q 026558 49 QRILIVGCGNSAFSEGMVDD----G--YEDVVNVDISSV--------------------------VIEAMMKKYS--N-- 92 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~----~--~~~~~~vD~s~~--------------------------~~~~a~~~~~--~-- 92 (237)
+.|||+|+..|..++.+++. + ..+++++|..+. .++.++++++ +
T Consensus 108 g~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl~ 187 (282)
T 2wk1_A 108 GDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDLL 187 (282)
T ss_dssp CEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTCC
T ss_pred CcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCCC
Confidence 49999999999988887653 1 348999996421 3566777764 2
Q ss_pred CCCcEEEEccccc-cccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 93 RPQLKYIKMDVRQ-MDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 93 ~~~~~~~~~d~~~-~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
..+++++.+|+.+ ++.++.++||+|+.+.-. . +.....++.+...|+|||++++-.+
T Consensus 188 ~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y-------~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 188 DEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--Y-------ESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp STTEEEEESCHHHHSTTCCCCCEEEEEECCCS--H-------HHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred cCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--c-------ccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 2689999999976 444556789999988642 2 5567899999999999999988654
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.2e-06 Score=73.77 Aligned_cols=112 Identities=13% Similarity=0.089 Sum_probs=80.5
Q ss_pred cEEEEccCCchhHHHHHHc---------------C--CCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccc---c
Q 026558 50 RILIVGCGNSAFSEGMVDD---------------G--YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQ---M 106 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~---------------~--~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~---~ 106 (237)
+|+|+||++|..+..+.+. . ..+++..|+-....+.+-+.+... .+..|+.+.... -
T Consensus 54 ~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~r 133 (359)
T 1m6e_X 54 AIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGR 133 (359)
T ss_dssp CCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSSC
T ss_pred EEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhhhc
Confidence 8999999999877665433 1 138889999988888888777431 122444443333 3
Q ss_pred ccccCCCccEEEeccccceeccCCCC--------------------------hHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 107 DEFQTGSFDSVVDKGTLDSLLCGSNS--------------------------RQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 107 ~~~~~~~fD~I~~~~~l~~~~~~~~~--------------------------~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
. |+.+++|+|+|+.++||+..-+.. ..+...+|+...+.|+|||++++.....
T Consensus 134 l-fp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~gr 212 (359)
T 1m6e_X 134 L-FPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGR 212 (359)
T ss_dssp C-SCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEEC
T ss_pred c-CCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecC
Confidence 3 789999999999999997321111 2356678999999999999999988655
Q ss_pred ch
Q 026558 161 PI 162 (237)
Q Consensus 161 ~~ 162 (237)
+.
T Consensus 213 ~~ 214 (359)
T 1m6e_X 213 RS 214 (359)
T ss_dssp SS
T ss_pred CC
Confidence 43
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.2e-06 Score=76.03 Aligned_cols=130 Identities=12% Similarity=0.131 Sum_probs=85.2
Q ss_pred eeecCCcChHHHHHhhCCC-CCCcEEEEccCCchhHHHHHHc----C----------CCeEEEEeCCHHHHHHHHHHc--
Q 026558 28 DWYQKYPSLAPLIKLYVPS-HHQRILIVGCGNSAFSEGMVDD----G----------YEDVVNVDISSVVIEAMMKKY-- 90 (237)
Q Consensus 28 ~~~~~~~~~~~~l~~~~~~-~~~~iLdlG~G~G~~~~~~~~~----~----------~~~~~~vD~s~~~~~~a~~~~-- 90 (237)
+++.+.. +.+++-..+.+ .+.+|+|.+||+|.++..+.++ . ...++|+|+++.+...|+.+.
T Consensus 198 qfyTP~~-Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~l 276 (530)
T 3ufb_A 198 EFYTPRP-VVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLL 276 (530)
T ss_dssp CCCCCHH-HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHH
T ss_pred eECCcHH-HHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHh
Confidence 3344433 44444444443 3349999999999999877553 1 136999999999999999875
Q ss_pred CCCCCcEEEEcccccccc---ccCCCccEEEeccccceec---------cCCCChHHHHHHHHHHHHhcC-------CCc
Q 026558 91 SNRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGTLDSLL---------CGSNSRQNATQMLKEVWRVLK-------DKG 151 (237)
Q Consensus 91 ~~~~~~~~~~~d~~~~~~---~~~~~fD~I~~~~~l~~~~---------~~~~~~~~~~~~l~~~~~~L~-------pgG 151 (237)
.+.....+..+|....+. ....+||+|+++.++..-. .+.........++..+.+.|+ +||
T Consensus 277 hg~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gG 356 (530)
T 3ufb_A 277 HGLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGG 356 (530)
T ss_dssp HTCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCC
T ss_pred cCCccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCc
Confidence 233445677888765431 2345799999998874220 000111223457888888886 699
Q ss_pred EEEEEEc
Q 026558 152 VYILVTY 158 (237)
Q Consensus 152 ~l~~~~~ 158 (237)
++.++..
T Consensus 357 r~avVlP 363 (530)
T 3ufb_A 357 RAAVVVP 363 (530)
T ss_dssp EEEEEEE
T ss_pred eEEEEec
Confidence 9888764
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.43 E-value=3e-07 Score=74.09 Aligned_cols=103 Identities=10% Similarity=0.057 Sum_probs=67.7
Q ss_pred CcEEEEccCCchhHHHHHHc-------CC------CeEEEEeCCH---HHHH-----------HHHHHcC----------
Q 026558 49 QRILIVGCGNSAFSEGMVDD-------GY------EDVVNVDISS---VVIE-----------AMMKKYS---------- 91 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-------~~------~~~~~vD~s~---~~~~-----------~a~~~~~---------- 91 (237)
.+|||+|+|+|..+..+++. .. .+++++|..| +.+. .|++.+.
T Consensus 62 ~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g~~ 141 (257)
T 2qy6_A 62 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH 141 (257)
T ss_dssp EEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSEEE
T ss_pred CEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccchh
Confidence 38999999999988776542 21 3899999876 4444 3444321
Q ss_pred ------CCCCcEEEEcccccc-ccccC---CCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEE
Q 026558 92 ------NRPQLKYIKMDVRQM-DEFQT---GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (237)
Q Consensus 92 ------~~~~~~~~~~d~~~~-~~~~~---~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 155 (237)
+..++++..+|+.+. +..+. ..||+|+.+..--.- ++.--...+++.+.++|+|||+++.
T Consensus 142 r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~----~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 142 RLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAK----NPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTT----CGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred heeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCccc----ChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 113567899999773 32322 379999987421100 1111246799999999999999874
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=2.5e-06 Score=71.57 Aligned_cols=98 Identities=9% Similarity=0.074 Sum_probs=67.9
Q ss_pred CCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.++. ++|||||++|.++..+++++. .|++||+.+-. ..+. ..+++.++++|+.... .+...+|+|+|+....
T Consensus 210 ~~G~-~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l~-~~l~----~~~~V~~~~~d~~~~~-~~~~~~D~vvsDm~~~ 281 (375)
T 4auk_A 210 ANGM-WAVDLGACPGGWTYQLVKRNM-WVYSVDNGPMA-QSLM----DTGQVTWLREDGFKFR-PTRSNISWMVCDMVEK 281 (375)
T ss_dssp CTTC-EEEEETCTTCHHHHHHHHTTC-EEEEECSSCCC-HHHH----TTTCEEEECSCTTTCC-CCSSCEEEEEECCSSC
T ss_pred CCCC-EEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhcC-hhhc----cCCCeEEEeCcccccc-CCCCCcCEEEEcCCCC
Confidence 3444 999999999999999999975 99999987521 2222 2268999999998876 4567899999987653
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
. .....++.........++.++...+
T Consensus 282 p--------~~~~~l~~~wl~~~~~~~aI~~lKL 307 (375)
T 4auk_A 282 P--------AKVAALMAQWLVNGWCRETIFNLKL 307 (375)
T ss_dssp H--------HHHHHHHHHHHHTTSCSEEEEEEEC
T ss_pred h--------HHhHHHHHHHHhccccceEEEEEEe
Confidence 2 3444444444444444455554443
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.6e-06 Score=70.44 Aligned_cols=83 Identities=12% Similarity=0.140 Sum_probs=63.8
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc-c--
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF-Q-- 110 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~-- 110 (237)
+.+.+..+...+++.+||..||.|..+..+++.. ..+++|+|.++.+++.++ ++. ..++.++++++.++..+ .
T Consensus 46 l~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~-~~Rv~lv~~nF~~l~~~L~~~ 123 (347)
T 3tka_A 46 LDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID-DPRFSIIHGPFSALGEYVAER 123 (347)
T ss_dssp THHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC-CTTEEEEESCGGGHHHHHHHT
T ss_pred HHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc-CCcEEEEeCCHHHHHHHHHhc
Confidence 4666666655444599999999999999999873 359999999999999995 553 36889999999886531 1
Q ss_pred --CCCccEEEec
Q 026558 111 --TGSFDSVVDK 120 (237)
Q Consensus 111 --~~~fD~I~~~ 120 (237)
.+++|.|+.+
T Consensus 124 g~~~~vDgILfD 135 (347)
T 3tka_A 124 DLIGKIDGILLD 135 (347)
T ss_dssp TCTTCEEEEEEE
T ss_pred CCCCcccEEEEC
Confidence 1368999886
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.6e-06 Score=68.75 Aligned_cols=116 Identities=12% Similarity=0.026 Sum_probs=69.9
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCC-CCc---EEEEc-cccccccc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR-PQL---KYIKM-DVRQMDEF 109 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~-~~~---~~~~~-d~~~~~~~ 109 (237)
+.++....+-++..+||||||+.|.++..+++.- ...+.|.++.... . ....... +++ .+.++ |+.++.
T Consensus 62 L~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~--~~P~~~~~~Gv~~i~~~~G~Df~~~~-- 136 (269)
T 2px2_A 62 LRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H--EEPMLMQSYGWNIVTMKSGVDVFYKP-- 136 (269)
T ss_dssp HHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S--CCCCCCCSTTGGGEEEECSCCGGGSC--
T ss_pred HHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c--cCCCcccCCCceEEEeeccCCccCCC--
Confidence 4455555444444599999999999999998862 1233444443321 0 0001111 234 34446 998754
Q ss_pred cCCCccEEEeccccceeccCCCChHHH--HHHHHHHHHhcCCCc-EEEEEEcCC
Q 026558 110 QTGSFDSVVDKGTLDSLLCGSNSRQNA--TQMLKEVWRVLKDKG-VYILVTYGA 160 (237)
Q Consensus 110 ~~~~fD~I~~~~~l~~~~~~~~~~~~~--~~~l~~~~~~L~pgG-~l~~~~~~~ 160 (237)
...+|+|+|+.... ++....+.. ...|+-+.++|+||| .|++-.+..
T Consensus 137 -~~~~DvVLSDMAPn---SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg 186 (269)
T 2px2_A 137 -SEISDTLLCDIGES---SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP 186 (269)
T ss_dssp -CCCCSEEEECCCCC---CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred -CCCCCEEEeCCCCC---CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence 56899999987653 232211211 126777889999999 898877764
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=98.10 E-value=3.4e-06 Score=68.20 Aligned_cols=101 Identities=7% Similarity=-0.023 Sum_probs=80.6
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc-c--ccCCCccEEEecccccee
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD-E--FQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~--~~~~~fD~I~~~~~l~~~ 126 (237)
.+||+-+|+|.+++.+.+.+ .+++.+|.++..++..++++....+++++..|..... . -+..+||+|+.+.++..-
T Consensus 94 ~~LDlfaGSGaLgiEaLS~~-d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k 172 (283)
T 2oo3_A 94 STLSYYPGSPYFAINQLRSQ-DRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERK 172 (283)
T ss_dssp SSCCEEECHHHHHHHHSCTT-SEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCST
T ss_pred CceeEeCCcHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCC
Confidence 68999999999999999965 6999999999999999999977668999999975522 1 134579999999887632
Q ss_pred ccCCCChHHHHHHHHHHHH--hcCCCcEEEEEEc
Q 026558 127 LCGSNSRQNATQMLKEVWR--VLKDKGVYILVTY 158 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~--~L~pgG~l~~~~~ 158 (237)
.....+++.+.+ .+.|+|++++...
T Consensus 173 -------~~~~~vl~~L~~~~~r~~~Gi~v~WYP 199 (283)
T 2oo3_A 173 -------EEYKEIPYAIKNAYSKFSTGLYCVWYP 199 (283)
T ss_dssp -------THHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred -------cHHHHHHHHHHHhCccCCCeEEEEEEe
Confidence 456666666655 4568999988764
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.2e-05 Score=64.85 Aligned_cols=118 Identities=14% Similarity=0.144 Sum_probs=73.4
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHc-CCCeEEEEeCCHHHHHH--HHHHcCCCCCcEEEEc-cccccccccC
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEA--MMKKYSNRPQLKYIKM-DVRQMDEFQT 111 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~-~~~~~~~vD~s~~~~~~--a~~~~~~~~~~~~~~~-d~~~~~~~~~ 111 (237)
+..+..........+||||||++|.++..++.. +...|+|+|+-..-.+. ..+.+ +-..+.+..+ |+..++ .
T Consensus 83 L~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql-~w~lV~~~~~~Dv~~l~---~ 158 (321)
T 3lkz_A 83 LRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSY-GWNIVTMKSGVDVFYRP---S 158 (321)
T ss_dssp HHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBT-TGGGEEEECSCCTTSSC---C
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhc-CCcceEEEeccCHhhCC---C
Confidence 455555544434349999999999999977665 45589999997641100 00000 0013566666 777775 3
Q ss_pred CCccEEEeccccceeccCCCC--hHHHHHHHHHHHHhcCCC-cEEEEEEcCC
Q 026558 112 GSFDSVVDKGTLDSLLCGSNS--RQNATQMLKEVWRVLKDK-GVYILVTYGA 160 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~~~~~--~~~~~~~l~~~~~~L~pg-G~l~~~~~~~ 160 (237)
..+|+|+|+.. ..- +... ......+|+-+.+.|++| |-+++-.+.+
T Consensus 159 ~~~D~ivcDig-eSs--~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 159 ECCDTLLCDIG-ESS--SSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp CCCSEEEECCC-CCC--SCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred CCCCEEEEECc-cCC--CChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 67999999865 221 1111 112234777788999999 8888866655
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=98.05 E-value=8.4e-06 Score=66.97 Aligned_cols=54 Identities=9% Similarity=0.118 Sum_probs=45.3
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS 91 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~ 91 (237)
+..++.....++. .|||++||+|..++.+++.+. +++|+|+++.+++.|++++.
T Consensus 225 ~~~~i~~~~~~~~-~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~ 278 (297)
T 2zig_A 225 AERLVRMFSFVGD-VVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFA 278 (297)
T ss_dssp HHHHHHHHCCTTC-EEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCC-EEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHH
Confidence 4455555554454 999999999999999999886 99999999999999999974
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=4.6e-05 Score=59.66 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=74.6
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEc-cccccccccC
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKM-DVRQMDEFQT 111 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~-d~~~~~~~~~ 111 (237)
+..+..........+||||||++|.++..++.. +..+|+|+|+-..-.+.=+ ..+ +-+.+.|.++ |+..++ .
T Consensus 67 L~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~-~~~s~gwn~v~fk~gvDv~~~~---~ 142 (267)
T 3p8z_A 67 LQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV-PMSTYGWNIVKLMSGKDVFYLP---P 142 (267)
T ss_dssp HHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCCTTTTSEEEECSCCGGGCC---C
T ss_pred HHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc-hhhhcCcCceEEEeccceeecC---C
Confidence 455555554333349999999999999977665 4458999999753321000 001 1246889988 987765 3
Q ss_pred CCccEEEeccccceeccCCCChH---HHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 112 GSFDSVVDKGTLDSLLCGSNSRQ---NATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~~~~~~~---~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
..+|.|+|+..-. ++ ++.- ....+|+-+.+.|++ |.+++-.+.+
T Consensus 143 ~~~DtllcDIgeS---s~-~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~p 189 (267)
T 3p8z_A 143 EKCDTLLCDIGES---SP-SPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNP 189 (267)
T ss_dssp CCCSEEEECCCCC---CS-CHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCC
T ss_pred ccccEEEEecCCC---CC-ChhhhhhHHHHHHHHHHHhccc-CCEEEEEccC
Confidence 6799999986541 11 1111 223477778899998 7777765544
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00024 Score=60.19 Aligned_cols=74 Identities=15% Similarity=0.296 Sum_probs=62.5
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc--c-----cCCCccEEEeccc
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE--F-----QTGSFDSVVDKGT 122 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~--~-----~~~~fD~I~~~~~ 122 (237)
++|||.||.|.++..+.+.|...+.++|+++.+++..+.++ ++..++++|+.++.. + ....+|+|+...+
T Consensus 4 ~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~---~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 4 NVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINF---PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp EEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHC---TTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred eEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhC---CCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 79999999999999999999767889999999999999997 567888999987641 1 2468999999888
Q ss_pred ccee
Q 026558 123 LDSL 126 (237)
Q Consensus 123 l~~~ 126 (237)
++.+
T Consensus 81 CQ~f 84 (376)
T 3g7u_A 81 CQGF 84 (376)
T ss_dssp CCTT
T ss_pred CCCc
Confidence 7655
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.68 E-value=9.7e-05 Score=59.38 Aligned_cols=54 Identities=9% Similarity=0.079 Sum_probs=45.9
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS 91 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~ 91 (237)
+..++.....++. .|||+.||+|+.+..+.+.+. +++|+|+++..++.+++++.
T Consensus 202 ~~~~i~~~~~~~~-~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~ 255 (260)
T 1g60_A 202 IERIIRASSNPND-LVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLN 255 (260)
T ss_dssp HHHHHHHHCCTTC-EEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCC-EEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHH
Confidence 4455666555555 999999999999999999875 99999999999999999974
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00019 Score=60.07 Aligned_cols=74 Identities=16% Similarity=0.301 Sum_probs=58.6
Q ss_pred cEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc--ccCCCccEEEeccccce
Q 026558 50 RILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE--FQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~--~~~~~fD~I~~~~~l~~ 125 (237)
+||||.||.|.++..+.+.| ...++++|+++.+++..+.++ ++..++.+|+.++.. ++...+|+|+...+++.
T Consensus 4 ~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~---~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~ 80 (343)
T 1g55_A 4 RVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF---PHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQP 80 (343)
T ss_dssp EEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC---TTSCEECSCGGGCCHHHHHHHCCSEEEECCC---
T ss_pred eEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhc---cccccccCCHHHccHhHcCcCCcCEEEEcCCCcc
Confidence 79999999999999999988 447999999999999999998 345678899987641 22236999999988766
Q ss_pred e
Q 026558 126 L 126 (237)
Q Consensus 126 ~ 126 (237)
+
T Consensus 81 f 81 (343)
T 1g55_A 81 F 81 (343)
T ss_dssp -
T ss_pred h
Confidence 5
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00017 Score=60.43 Aligned_cols=58 Identities=14% Similarity=0.078 Sum_probs=50.3
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD 107 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~ 107 (237)
..|||||+|.|.+|..+++.. ..+++++|+++..+...++.. ..++++++.+|+.++.
T Consensus 60 ~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~~~~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 60 LKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-EGSPLQILKRDPYDWS 118 (353)
T ss_dssp CEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-TTSSCEEECSCTTCHH
T ss_pred CEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-cCCCEEEEECCccchh
Confidence 389999999999999999863 348999999999999999887 4478999999997653
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0005 Score=57.15 Aligned_cols=72 Identities=17% Similarity=0.196 Sum_probs=59.2
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
++|||.||.|.++..+.+.|...+.++|+++.+++..+.++.... .+|+.++....-..+|+|+...+++.+
T Consensus 13 ~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~~-----~~Di~~~~~~~~~~~D~l~~gpPCQ~f 84 (327)
T 2c7p_A 13 RFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKP-----EGDITQVNEKTIPDHDILCAGFPCQAF 84 (327)
T ss_dssp EEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCC-----BSCGGGSCGGGSCCCSEEEEECCCTTT
T ss_pred cEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCCC-----cCCHHHcCHhhCCCCCEEEECCCCCCc
Confidence 899999999999999999997789999999999999999985322 688877652222469999999887765
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00037 Score=56.34 Aligned_cols=100 Identities=10% Similarity=0.020 Sum_probs=66.0
Q ss_pred CcEEEEcc------CCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEec
Q 026558 49 QRILIVGC------GNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~------G~G~~~~~~~~~~~--~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~ 120 (237)
.+|||+|+ -+|+. .+.+.+. +.++++|+.+-. ...+ .++++|+.... ...+||+|+|+
T Consensus 111 mrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~---------sda~-~~IqGD~~~~~--~~~k~DLVISD 176 (344)
T 3r24_A 111 MRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFV---------SDAD-STLIGDCATVH--TANKWDLIISD 176 (344)
T ss_dssp CEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCB---------CSSS-EEEESCGGGEE--ESSCEEEEEEC
T ss_pred CEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccc---------cCCC-eEEEccccccc--cCCCCCEEEec
Confidence 39999996 45653 2233332 389999997732 1123 45999987764 46889999998
Q ss_pred cccceec-cCC---CChHHHHHHHHHHHHhcCCCcEEEEEEcCCch
Q 026558 121 GTLDSLL-CGS---NSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (237)
Q Consensus 121 ~~l~~~~-~~~---~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 162 (237)
..-...- .+. ......+.+++-+.+.|+|||.|++-.+....
T Consensus 177 MAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg 222 (344)
T 3r24_A 177 MYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW 222 (344)
T ss_dssp CCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC
T ss_pred CCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC
Confidence 6532210 000 12335677788889999999999998775544
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=2.5e-05 Score=80.41 Aligned_cols=101 Identities=18% Similarity=0.142 Sum_probs=51.7
Q ss_pred CcEEEEccCCchhHHHHHHcC------CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG------YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~------~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~ 122 (237)
.+|||+|.|+|..+..+.+.. ..+++.+|+|+...+.++++++. -++..-..|..+...+....||+|+...+
T Consensus 1242 ~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~-~di~~~~~d~~~~~~~~~~~ydlvia~~v 1320 (2512)
T 2vz8_A 1242 MKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQ-LHVTQGQWDPANPAPGSLGKADLLVCNCA 1320 (2512)
T ss_dssp EEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHH-HTEEEECCCSSCCCC-----CCEEEEECC
T ss_pred ceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhh-cccccccccccccccCCCCceeEEEEccc
Confidence 389999999998776654431 24799999999888877777632 01222112332221134567999999999
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+|.. .+....+.++.++|+|||.+++..
T Consensus 1321 l~~t-------~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1321 LATL-------GDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp ---------------------------CCEEEEEE
T ss_pred cccc-------ccHHHHHHHHHHhcCCCcEEEEEe
Confidence 9876 677889999999999999988865
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0016 Score=54.25 Aligned_cols=103 Identities=13% Similarity=0.190 Sum_probs=76.9
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC-----------------------CCCcEEEEcccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN-----------------------RPQLKYIKMDVR 104 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~-----------------------~~~~~~~~~d~~ 104 (237)
..|+.||||.......+...+ ...++-+|. |++++.-++.+.. ..+..++.+|+.
T Consensus 99 ~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL~ 177 (334)
T 1rjd_A 99 VQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDLN 177 (334)
T ss_dssp EEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCTT
T ss_pred cEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCCC
Confidence 489999999999998888753 336666666 8887776666532 146788999998
Q ss_pred cccc-------c-cCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 105 QMDE-------F-QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 105 ~~~~-------~-~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+... . ......++++-+++.++ +++....+++.+.+.. |+|.+++.+.
T Consensus 178 d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL-----~~~~~~~ll~~ia~~~-~~~~~v~~e~ 233 (334)
T 1rjd_A 178 DITETTRLLDVCTKREIPTIVISECLLCYM-----HNNESQLLINTIMSKF-SHGLWISYDP 233 (334)
T ss_dssp CHHHHHHHHHTTCCTTSCEEEEEESCGGGS-----CHHHHHHHHHHHHHHC-SSEEEEEEEE
T ss_pred CcHHHHHHHHhcCCCCCCEEEEEcchhhCC-----CHHHHHHHHHHHHhhC-CCcEEEEEec
Confidence 7421 1 23567889999999999 8889999999998887 7777765554
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0017 Score=53.79 Aligned_cols=73 Identities=14% Similarity=0.215 Sum_probs=61.1
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
+||||-||.|.++.-+.+.|+..+.++|+++.+++.-+.++. ..++.+|+.++..-.-..+|+++...+++.+
T Consensus 2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~----~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~f 74 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS----AKLIKGDISKISSDEFPKCDGIIGGPPSQSW 74 (331)
T ss_dssp EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC----SEEEESCGGGCCGGGSCCCSEEECCCCGGGT
T ss_pred eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC----CCcccCChhhCCHhhCCcccEEEecCCCCCc
Confidence 689999999999999998888788899999999999999973 3678899988763333579999998877665
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0042 Score=51.15 Aligned_cols=116 Identities=14% Similarity=0.116 Sum_probs=82.0
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-----CCCCcEEEEccccccc----
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-----NRPQLKYIKMDVRQMD---- 107 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-----~~~~~~~~~~d~~~~~---- 107 (237)
.+.+...+..+...||+||||-=.....+.......++-+| .|.+++..++.+. ...+..++.+|+.+ .
T Consensus 92 d~~v~~~~~~g~~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~ 169 (310)
T 2uyo_A 92 DTYFNNAVIDGIRQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPA 169 (310)
T ss_dssp HHHHHHHHHTTCCEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHH
T ss_pred HHHHHHHHHhCCCeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHH
Confidence 33444444333347999999986665555422224888889 5999999888874 23467788899876 2
Q ss_pred ----cccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 108 ----EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 108 ----~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
.+.....=++++-++++++ +.+....+++.+...+.||+.+++....
T Consensus 170 l~~~g~d~~~Pt~~i~Egvl~Yl-----~~~~~~~ll~~l~~~~~~gs~l~~d~~~ 220 (310)
T 2uyo_A 170 LRSAGFDPSARTAWLAEGLLMYL-----PATAQDGLFTEIGGLSAVGSRIAVETSP 220 (310)
T ss_dssp HHHTTCCTTSCEEEEECSCGGGS-----CHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred HHhccCCCCCCEEEEEechHhhC-----CHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 0223445678888899998 7788899999999999999988876543
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.011 Score=48.36 Aligned_cols=75 Identities=21% Similarity=0.176 Sum_probs=60.8
Q ss_pred cEEEEccCCchhHHHHHHcCCCe--EEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc--cc-CCCccEEEeccccc
Q 026558 50 RILIVGCGNSAFSEGMVDDGYED--VVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE--FQ-TGSFDSVVDKGTLD 124 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~--~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~--~~-~~~fD~I~~~~~l~ 124 (237)
+++||-||.|.++..+.+.|... +.++|+++.+++..+.++ ++..+..+|+.++.. ++ .+.+|+++...+++
T Consensus 18 ~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~---~~~~~~~~DI~~i~~~~i~~~~~~Dll~ggpPCQ 94 (295)
T 2qrv_A 18 RVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH---QGKIMYVGDVRSVTQKHIQEWGPFDLVIGGSPCN 94 (295)
T ss_dssp EEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT---TTCEEEECCGGGCCHHHHHHTCCCSEEEECCCCG
T ss_pred EEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC---CCCceeCCChHHccHHHhcccCCcCEEEecCCCc
Confidence 89999999999999999988644 699999999999888887 445688899987642 21 24799999998877
Q ss_pred eec
Q 026558 125 SLL 127 (237)
Q Consensus 125 ~~~ 127 (237)
.+.
T Consensus 95 ~fS 97 (295)
T 2qrv_A 95 DLS 97 (295)
T ss_dssp GGB
T ss_pred ccc
Confidence 664
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0017 Score=54.07 Aligned_cols=74 Identities=18% Similarity=0.319 Sum_probs=60.4
Q ss_pred cEEEEccCCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc--ccCCCccEEEeccccce
Q 026558 50 RILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE--FQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~--~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~--~~~~~fD~I~~~~~l~~ 125 (237)
+++|+.||.|.+...+.+.|. ..+.++|+++.+++.-+.++ +...+...|+.++.. ++...+|+++...+++.
T Consensus 5 ~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~---~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ~ 81 (333)
T 4h0n_A 5 KILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNF---PETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQP 81 (333)
T ss_dssp EEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC---TTSCEECCCGGGCCHHHHHHTTCCEEEECCCCCC
T ss_pred EEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhC---CCCceeccccccCCHHHhccCCCCEEEecCCCcc
Confidence 799999999999999988874 47889999999999999998 345677889887642 33347999999887765
Q ss_pred e
Q 026558 126 L 126 (237)
Q Consensus 126 ~ 126 (237)
+
T Consensus 82 f 82 (333)
T 4h0n_A 82 F 82 (333)
T ss_dssp S
T ss_pred h
Confidence 5
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0042 Score=54.23 Aligned_cols=77 Identities=12% Similarity=0.122 Sum_probs=62.4
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc----------------cCCC
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF----------------QTGS 113 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~----------------~~~~ 113 (237)
+++||.||.|.+..-+.+.|+..+.++|+++.+++.-+.++...++..++.+|+.++... ....
T Consensus 90 ~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~~~~~~ 169 (482)
T 3me5_A 90 RFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEGVSDEAAAEHIRQHIPE 169 (482)
T ss_dssp EEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCCTTTCEEESCTHHHHCTTCTTSCHHHHHHHHHHHSCC
T ss_pred eEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccCCCcceeccchhhhhhccccccchhhHHhhhhhcCCC
Confidence 799999999999999998887678999999999999999985545667788898765410 1246
Q ss_pred ccEEEecccccee
Q 026558 114 FDSVVDKGTLDSL 126 (237)
Q Consensus 114 fD~I~~~~~l~~~ 126 (237)
+|+|+...+++.+
T Consensus 170 ~Dvl~gGpPCQ~F 182 (482)
T 3me5_A 170 HDVLLAGFPCQPF 182 (482)
T ss_dssp CSEEEEECCCCCC
T ss_pred CCEEEecCCCcch
Confidence 8999998887765
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0052 Score=50.97 Aligned_cols=73 Identities=5% Similarity=0.081 Sum_probs=58.8
Q ss_pred cEEEEccCCchhHHHHHHcCC--CeE-EEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc--ccCCCccEEEeccccc
Q 026558 50 RILIVGCGNSAFSEGMVDDGY--EDV-VNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE--FQTGSFDSVVDKGTLD 124 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~--~~~-~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~--~~~~~fD~I~~~~~l~ 124 (237)
+++||.||.|.+...+.+.|. ..+ .++|+++.+++.-+.++.. . +..+|+.++.. ++...+|+++...+++
T Consensus 12 ~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~---~-~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ 87 (327)
T 3qv2_A 12 NVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE---E-VQVKNLDSISIKQIESLNCNTWFMSPPCQ 87 (327)
T ss_dssp EEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC---C-CBCCCTTTCCHHHHHHTCCCEEEECCCCT
T ss_pred EEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC---C-cccCChhhcCHHHhccCCCCEEEecCCcc
Confidence 899999999999999998883 467 7999999999999999843 2 56778877642 2334799999988876
Q ss_pred ee
Q 026558 125 SL 126 (237)
Q Consensus 125 ~~ 126 (237)
.+
T Consensus 88 ~f 89 (327)
T 3qv2_A 88 PY 89 (327)
T ss_dssp TC
T ss_pred Cc
Confidence 55
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0027 Score=52.61 Aligned_cols=69 Identities=6% Similarity=0.048 Sum_probs=52.5
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCC-CcEEEEcccccc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRP-QLKYIKMDVRQM 106 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~ 106 (237)
+..++.....++. .|||..||+|+.+.++.+.+. +.+|+|+++..++.+++++.... ....++.|+.++
T Consensus 242 ~~~~i~~~~~~~~-~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~~~~~~~~~~~~i 311 (323)
T 1boo_A 242 PEFFIRMLTEPDD-LVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDNNISEEKITDIYNRI 311 (323)
T ss_dssp HHHHHHHHCCTTC-EEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCSCSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCC-EEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 4556666655565 999999999999999998875 99999999999999999985422 233444454444
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0037 Score=51.70 Aligned_cols=55 Identities=9% Similarity=0.166 Sum_probs=45.9
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCH---HHHHHHHHHcCC
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISS---VVIEAMMKKYSN 92 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~---~~~~~a~~~~~~ 92 (237)
+..++.....++. .|||.-||+|+.+.++.+.+. +.+|+|+++ ..++.+++++..
T Consensus 232 ~~~~i~~~~~~~~-~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~ 289 (319)
T 1eg2_A 232 IERLVRALSHPGS-TVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQD 289 (319)
T ss_dssp HHHHHHHHSCTTC-EEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC--
T ss_pred HHHHHHHhCCCCC-EEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHH
Confidence 4556666656665 999999999999999999875 999999999 999999999853
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.027 Score=44.93 Aligned_cols=109 Identities=8% Similarity=0.044 Sum_probs=73.1
Q ss_pred HhhCCCCCCcEEEEccCCchhHHHHHHc-------C-CCeEEEEeC-----CH----------------------HHHHH
Q 026558 41 KLYVPSHHQRILIVGCGNSAFSEGMVDD-------G-YEDVVNVDI-----SS----------------------VVIEA 85 (237)
Q Consensus 41 ~~~~~~~~~~iLdlG~G~G~~~~~~~~~-------~-~~~~~~vD~-----s~----------------------~~~~~ 85 (237)
+....-+ +.|+|+|+-.|..+..++.. + ..+++++|. .+ +.++.
T Consensus 64 ~~i~~vp-G~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~ 142 (257)
T 3tos_A 64 RQVLDVP-GVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKE 142 (257)
T ss_dssp HHTTTSC-SEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHH
T ss_pred HHhhCCC-CeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHH
Confidence 3333444 49999999999888776542 2 248999993 11 11222
Q ss_pred H---HHHc---CC-CCCcEEEEcccccc-cc----ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEE
Q 026558 86 M---MKKY---SN-RPQLKYIKMDVRQM-DE----FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVY 153 (237)
Q Consensus 86 a---~~~~---~~-~~~~~~~~~d~~~~-~~----~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l 153 (237)
. .++. .. ..+++++.+++.+. +. .+...+|+|+...- .. +.....++.+...|+|||++
T Consensus 143 ~l~~~~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D--~Y-------~~t~~~le~~~p~l~~GGvI 213 (257)
T 3tos_A 143 VLDAHECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLD--LY-------EPTKAVLEAIRPYLTKGSIV 213 (257)
T ss_dssp HHHHHHTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCC--CH-------HHHHHHHHHHGGGEEEEEEE
T ss_pred HHHHHhhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCc--cc-------chHHHHHHHHHHHhCCCcEE
Confidence 1 1222 22 25899999999763 32 23457999998863 23 66788899999999999999
Q ss_pred EEEEcC
Q 026558 154 ILVTYG 159 (237)
Q Consensus 154 ~~~~~~ 159 (237)
++-.+.
T Consensus 214 v~DD~~ 219 (257)
T 3tos_A 214 AFDELD 219 (257)
T ss_dssp EESSTT
T ss_pred EEcCCC
Confidence 987763
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.016 Score=48.14 Aligned_cols=88 Identities=14% Similarity=0.136 Sum_probs=61.0
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+||-+|+|. |..+..+++....++++++.+++.++.+++.- -..++ .+...+ . ..+|+|+....-.
T Consensus 178 ~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lG----a~~v~-~~~~~~---~-~~~D~vid~~g~~--- 245 (348)
T 3two_A 178 TKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMG----VKHFY-TDPKQC---K-EELDFIISTIPTH--- 245 (348)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTT----CSEEE-SSGGGC---C-SCEEEEEECCCSC---
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcC----CCeec-CCHHHH---h-cCCCEEEECCCcH---
Confidence 3899999876 77777777765459999999999999887742 11233 333222 2 2799998743211
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
..++.+.++|+++|++++...
T Consensus 246 ----------~~~~~~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 246 ----------YDLKDYLKLLTYNGDLALVGL 266 (348)
T ss_dssp ----------CCHHHHHTTEEEEEEEEECCC
T ss_pred ----------HHHHHHHHHHhcCCEEEEECC
Confidence 136678899999999988654
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.027 Score=46.95 Aligned_cols=93 Identities=11% Similarity=0.125 Sum_probs=61.0
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEcc---ccc----cccccCCCccEEEe
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKMD---VRQ----MDEFQTGSFDSVVD 119 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d---~~~----~~~~~~~~fD~I~~ 119 (237)
.+||-+|+|. |..+..+++.... +++++|.+++.++.+++.-. -.++..+ ..+ +.......+|+|+.
T Consensus 173 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa----~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid 248 (356)
T 1pl8_A 173 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGA----DLVLQISKESPQEIARKVEGQLGCKPEVTIE 248 (356)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC----SEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC----CEEEcCcccccchHHHHHHHHhCCCCCEEEE
Confidence 3899999876 7777777775444 89999999999998875421 1222211 111 11111257999987
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
...- ...++.+.++|+++|+++....
T Consensus 249 ~~g~-------------~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 249 CTGA-------------EASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp CSCC-------------HHHHHHHHHHSCTTCEEEECSC
T ss_pred CCCC-------------hHHHHHHHHHhcCCCEEEEEec
Confidence 4321 2356778899999999987643
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0039 Score=50.94 Aligned_cols=64 Identities=20% Similarity=0.224 Sum_probs=44.1
Q ss_pred CcEEEEcccccc-ccccCCCccEEEeccccceecc--CCC-----------ChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 95 QLKYIKMDVRQM-DEFQTGSFDSVVDKGTLDSLLC--GSN-----------SRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 95 ~~~~~~~d~~~~-~~~~~~~fD~I~~~~~l~~~~~--~~~-----------~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.++++++|+.+. ..+++++||+|+++.+...... ... .......+++++.++|+|||.+++...
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~ 98 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG 98 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence 568999999873 3356789999999988643210 000 001235678899999999999988653
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.019 Score=47.01 Aligned_cols=106 Identities=18% Similarity=0.237 Sum_probs=61.8
Q ss_pred cEEEEccCCchhHHHHH----HcC-C--CeEEEEeCC------------HHHHHHHHHHcCC--CC--CcEEEEcccccc
Q 026558 50 RILIVGCGNSAFSEGMV----DDG-Y--EDVVNVDIS------------SVVIEAMMKKYSN--RP--QLKYIKMDVRQM 106 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~----~~~-~--~~~~~vD~s------------~~~~~~a~~~~~~--~~--~~~~~~~d~~~~ 106 (237)
+|||+|-|+|....... +.. . .+++.+|-. ....+....+... .. ...+..+|+.+.
T Consensus 99 ~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~~~ 178 (308)
T 3vyw_A 99 RILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDARKR 178 (308)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHHHH
T ss_pred EEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHHHH
Confidence 79999999997654322 222 1 256667642 1222223333221 12 345788898663
Q ss_pred -ccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 107 -DEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 107 -~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
+.+....+|+|+.++.-- ..++.-=...+++.++++++|||+++ |+...
T Consensus 179 l~~l~~~~~Da~flDgFsP----~kNPeLWs~e~f~~l~~~~~pgg~la--TYtaa 228 (308)
T 3vyw_A 179 IKEVENFKADAVFHDAFSP----YKNPELWTLDFLSLIKERIDEKGYWV--SYSSS 228 (308)
T ss_dssp GGGCCSCCEEEEEECCSCT----TTSGGGGSHHHHHHHHTTEEEEEEEE--ESCCC
T ss_pred HhhhcccceeEEEeCCCCc----ccCcccCCHHHHHHHHHHhCCCcEEE--EEeCc
Confidence 334456899998875311 00111123579999999999999875 55543
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.02 Score=48.09 Aligned_cols=93 Identities=16% Similarity=0.140 Sum_probs=61.5
Q ss_pred CcEEEEccCC-chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccc----ccccCCCccEEEeccc
Q 026558 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM----DEFQTGSFDSVVDKGT 122 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~----~~~~~~~fD~I~~~~~ 122 (237)
.+||-+|+|. |..+..+++. +...++++|.+++.++.+++.-. ..++..+-.++ .....+.+|+|+....
T Consensus 192 ~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa----~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g 267 (371)
T 1f8f_A 192 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA----THVINSKTQDPVAAIKEITDGGVNFALESTG 267 (371)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC----SEEEETTTSCHHHHHHHHTTSCEEEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC----CEEecCCccCHHHHHHHhcCCCCcEEEECCC
Confidence 4899999876 7777777765 43379999999999999876531 12222111111 1122337999987432
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
- ...++.+.+.|+++|++++.-.
T Consensus 268 ~-------------~~~~~~~~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 268 S-------------PEILKQGVDALGILGKIAVVGA 290 (371)
T ss_dssp C-------------HHHHHHHHHTEEEEEEEEECCC
T ss_pred C-------------HHHHHHHHHHHhcCCEEEEeCC
Confidence 1 2457888999999999987643
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.032 Score=46.89 Aligned_cols=91 Identities=20% Similarity=0.200 Sum_probs=59.0
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc-cccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-MDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+||-+|+|. |..+..+++....++++++.+++.++.+++.-. ..++...-.+ .... ...+|+|+....-.
T Consensus 196 ~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa----~~vi~~~~~~~~~~~-~~g~Dvvid~~g~~-- 268 (369)
T 1uuf_A 196 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGA----DEVVNSRNADEMAAH-LKSFDFILNTVAAP-- 268 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC----SEEEETTCHHHHHTT-TTCEEEEEECCSSC--
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC----cEEeccccHHHHHHh-hcCCCEEEECCCCH--
Confidence 3899999875 677777777544489999999999998886421 1222111111 1111 25799998753211
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
..++.+.+.|+++|+++...
T Consensus 269 -----------~~~~~~~~~l~~~G~iv~~G 288 (369)
T 1uuf_A 269 -----------HNLDDFTTLLKRDGTMTLVG 288 (369)
T ss_dssp -----------CCHHHHHTTEEEEEEEEECC
T ss_pred -----------HHHHHHHHHhccCCEEEEec
Confidence 13566789999999988754
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.069 Score=44.55 Aligned_cols=94 Identities=14% Similarity=0.131 Sum_probs=62.3
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEccc---cccc----c-ccCCCccEEE
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKMDV---RQMD----E-FQTGSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~---~~~~----~-~~~~~fD~I~ 118 (237)
.+||-+|+|. |..+..+++.... .++++|.+++.++.+++. . ..+.....+. .++. . .....+|+|+
T Consensus 181 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~--~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvi 257 (363)
T 3m6i_A 181 DPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-C--PEVVTHKVERLSAEESAKKIVESFGGIEPAVAL 257 (363)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-C--TTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-c--hhcccccccccchHHHHHHHHHHhCCCCCCEEE
Confidence 3899999866 7777777776433 499999999999999887 2 2222222221 1111 0 1245799999
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
....- ...++.+.++|+++|++++...
T Consensus 258 d~~g~-------------~~~~~~~~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 258 ECTGV-------------ESSIAAAIWAVKFGGKVFVIGV 284 (363)
T ss_dssp ECSCC-------------HHHHHHHHHHSCTTCEEEECCC
T ss_pred ECCCC-------------hHHHHHHHHHhcCCCEEEEEcc
Confidence 74321 2357788999999999988653
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.046 Score=45.46 Aligned_cols=93 Identities=13% Similarity=0.118 Sum_probs=61.8
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc----cc-cCCCccEEEecc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----EF-QTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~----~~-~~~~fD~I~~~~ 121 (237)
.+||-+|+|. |..+..+++.... +++++|.+++.++.+++.-. ..++..+-.++. .. ....+|+|+...
T Consensus 168 ~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa----~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~ 243 (352)
T 3fpc_A 168 DTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGA----TDIINYKNGDIVEQILKATDGKGVDKVVIAG 243 (352)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTC----CEEECGGGSCHHHHHHHHTTTCCEEEEEECS
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC----ceEEcCCCcCHHHHHHHHcCCCCCCEEEECC
Confidence 4899999876 7777777776544 89999999999998887632 122211111111 11 234699998742
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.- ...++.+.+.|+++|+++..-.
T Consensus 244 g~-------------~~~~~~~~~~l~~~G~~v~~G~ 267 (352)
T 3fpc_A 244 GD-------------VHTFAQAVKMIKPGSDIGNVNY 267 (352)
T ss_dssp SC-------------TTHHHHHHHHEEEEEEEEECCC
T ss_pred CC-------------hHHHHHHHHHHhcCCEEEEecc
Confidence 21 1357788999999999987653
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.046 Score=45.88 Aligned_cols=92 Identities=14% Similarity=0.193 Sum_probs=60.9
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEc---cccc-ccc---ccCCCccEEEe
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQ-MDE---FQTGSFDSVVD 119 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~---d~~~-~~~---~~~~~fD~I~~ 119 (237)
.+||-+|+|. |..+..+++.... +++++|.+++.++.+++.-.. .++.. |..+ ... ...+.+|+|+.
T Consensus 184 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~----~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid 259 (370)
T 4ej6_A 184 STVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGAT----ATVDPSAGDVVEAIAGPVGLVPGGVDVVIE 259 (370)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS----EEECTTSSCHHHHHHSTTSSSTTCEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC----EEECCCCcCHHHHHHhhhhccCCCCCEEEE
Confidence 3899999865 6777777776434 899999999999988876321 12211 1111 111 22347999987
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...- ...++.+.++|++||++++..
T Consensus 260 ~~G~-------------~~~~~~~~~~l~~~G~vv~~G 284 (370)
T 4ej6_A 260 CAGV-------------AETVKQSTRLAKAGGTVVILG 284 (370)
T ss_dssp CSCC-------------HHHHHHHHHHEEEEEEEEECS
T ss_pred CCCC-------------HHHHHHHHHHhccCCEEEEEe
Confidence 4221 245788899999999998764
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.036 Score=47.01 Aligned_cols=102 Identities=14% Similarity=0.175 Sum_probs=61.6
Q ss_pred CcEEEEccCC-chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccc-c----cc-cCCCccEEEec
Q 026558 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM-D----EF-QTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~-~----~~-~~~~fD~I~~~ 120 (237)
.+||.+|+|. |..+..+++. +..+++++|.+++.++.+++.- ..++..+-.+. . .. ....+|+|+..
T Consensus 187 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG-----a~~i~~~~~~~~~~~~~~~~~g~g~Dvvid~ 261 (398)
T 2dph_A 187 SHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAG-----FETIDLRNSAPLRDQIDQILGKPEVDCGVDA 261 (398)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTT-----CEEEETTSSSCHHHHHHHHHSSSCEEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-----CcEEcCCCcchHHHHHHHHhCCCCCCEEEEC
Confidence 3899999876 7777777775 4338999999999998887541 23332111111 1 11 12369999875
Q ss_pred cccceeccCCCC---hHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 121 GTLDSLLCGSNS---RQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 121 ~~l~~~~~~~~~---~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
..-... ...+ .......++.+.++|+++|++++.-
T Consensus 262 ~g~~~~--~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 262 VGFEAH--GLGDEANTETPNGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp SCTTCB--CSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred CCCccc--cccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence 332110 0000 0001235788899999999987654
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.056 Score=44.28 Aligned_cols=90 Identities=9% Similarity=0.115 Sum_probs=59.9
Q ss_pred cEEEEcc-CC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEE-ccccccccccCCCccEEEecccccee
Q 026558 50 RILIVGC-GN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK-MDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 50 ~iLdlG~-G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~-~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
+||-.|+ |. |..+..+++....++++++.+++.++.+++.-. ..++. .+.........+.+|+|+...
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa----~~vi~~~~~~~~~~~~~~~~d~v~d~~----- 219 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGA----NRILSRDEFAESRPLEKQLWAGAIDTV----- 219 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTC----SEEEEGGGSSCCCSSCCCCEEEEEESS-----
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC----CEEEecCCHHHHHhhcCCCccEEEECC-----
Confidence 5999997 33 777777777654599999999999999987521 11221 111111112345789887632
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+ ...++.+.++|+++|+++...
T Consensus 220 -----g----~~~~~~~~~~l~~~G~iv~~G 241 (324)
T 3nx4_A 220 -----G----DKVLAKVLAQMNYGGCVAACG 241 (324)
T ss_dssp -----C----HHHHHHHHHTEEEEEEEEECC
T ss_pred -----C----cHHHHHHHHHHhcCCEEEEEe
Confidence 1 126888999999999998764
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.061 Score=44.92 Aligned_cols=92 Identities=11% Similarity=0.124 Sum_probs=61.2
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc----cc-cCCCccEEEeccc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----EF-QTGSFDSVVDKGT 122 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~----~~-~~~~fD~I~~~~~ 122 (237)
.+||-+|+|. |..+..+++....++++++.+++.++.+++.-. ..++..+..++. .. ....+|+|+....
T Consensus 191 ~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa----~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~g 266 (363)
T 3uog_A 191 DRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGA----DHGINRLEEDWVERVYALTGDRGADHILEIAG 266 (363)
T ss_dssp CEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTC----SEEEETTTSCHHHHHHHHHTTCCEEEEEEETT
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCC----CEEEcCCcccHHHHHHHHhCCCCceEEEECCC
Confidence 3899999776 677777777654599999999999999877531 122222211111 11 2347999987532
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
. ..+..+.++|+++|++++...
T Consensus 267 -~-------------~~~~~~~~~l~~~G~iv~~G~ 288 (363)
T 3uog_A 267 -G-------------AGLGQSLKAVAPDGRISVIGV 288 (363)
T ss_dssp -S-------------SCHHHHHHHEEEEEEEEEECC
T ss_pred -h-------------HHHHHHHHHhhcCCEEEEEec
Confidence 1 136778899999999988753
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.12 Score=36.84 Aligned_cols=93 Identities=10% Similarity=0.092 Sum_probs=60.4
Q ss_pred cEEEEccCC-chhH-HHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---cCCCccEEEeccccc
Q 026558 50 RILIVGCGN-SAFS-EGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---QTGSFDSVVDKGTLD 124 (237)
Q Consensus 50 ~iLdlG~G~-G~~~-~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---~~~~fD~I~~~~~l~ 124 (237)
+|+-+|||. |... ..+.+.+. .++++|.+++.++.+++. ++.++.+|..+...+ .-..+|+|+....-
T Consensus 9 ~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~~-----g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~- 81 (140)
T 3fwz_A 9 HALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRER-----GVRAVLGNAANEEIMQLAHLECAKWLILTIPN- 81 (140)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHT-----TCEEEESCTTSHHHHHHTTGGGCSEEEECCSC-
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHc-----CCCEEECCCCCHHHHHhcCcccCCEEEEECCC-
Confidence 899998866 4333 23344555 999999999999888763 567888998764311 23568988874221
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
......+-...+.+.|+..++....
T Consensus 82 ---------~~~n~~~~~~a~~~~~~~~iiar~~ 106 (140)
T 3fwz_A 82 ---------GYEAGEIVASARAKNPDIEIIARAH 106 (140)
T ss_dssp ---------HHHHHHHHHHHHHHCSSSEEEEEES
T ss_pred ---------hHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 2222334446677788887766553
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.066 Score=44.20 Aligned_cols=92 Identities=13% Similarity=0.136 Sum_probs=61.3
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc-c--cCCCccEEEeccccc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE-F--QTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~-~--~~~~fD~I~~~~~l~ 124 (237)
.+||-.|+|. |..+..+++....+++++|.+++.++.+++.-. ..++..+-.+... . ..+.+|+|+....
T Consensus 168 ~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa----~~~i~~~~~~~~~~~~~~~g~~d~vid~~g-- 241 (340)
T 3s2e_A 168 QWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGA----EVAVNARDTDPAAWLQKEIGGAHGVLVTAV-- 241 (340)
T ss_dssp SEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC----SEEEETTTSCHHHHHHHHHSSEEEEEESSC--
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCC----CEEEeCCCcCHHHHHHHhCCCCCEEEEeCC--
Confidence 3889899876 788888887654599999999999998877531 1222111111110 0 1237899886422
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
....++.+.++|+++|++++..
T Consensus 242 -----------~~~~~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 242 -----------SPKAFSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp -----------CHHHHHHHHHHEEEEEEEEECS
T ss_pred -----------CHHHHHHHHHHhccCCEEEEeC
Confidence 1346778899999999998764
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.069 Score=44.65 Aligned_cols=90 Identities=16% Similarity=0.195 Sum_probs=60.6
Q ss_pred cEEEEc-cCC-chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc--ccc-ccccccCCCccEEEecccc
Q 026558 50 RILIVG-CGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM--DVR-QMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 50 ~iLdlG-~G~-G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~--d~~-~~~~~~~~~fD~I~~~~~l 123 (237)
+||-.| +|. |..+..+++. +..++++++.+++.++.+++.-. ..++.. |.. .+.....+.+|+|+....
T Consensus 174 ~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGa----d~vi~~~~~~~~~v~~~~~~g~Dvvid~~g- 248 (363)
T 4dvj_A 174 AILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGA----HHVIDHSKPLAAEVAALGLGAPAFVFSTTH- 248 (363)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTC----SEEECTTSCHHHHHHTTCSCCEEEEEECSC-
T ss_pred EEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCC----CEEEeCCCCHHHHHHHhcCCCceEEEECCC-
Confidence 899998 555 7888888886 55699999999999998876421 112111 111 111123457999987421
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
....++.+.++|+++|++++.
T Consensus 249 ------------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 249 ------------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp ------------HHHHHHHHHHHSCTTCEEEEC
T ss_pred ------------chhhHHHHHHHhcCCCEEEEE
Confidence 134678889999999999876
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.042 Score=46.19 Aligned_cols=91 Identities=14% Similarity=0.223 Sum_probs=60.6
Q ss_pred CcEEEEccCC-chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccc----cc----ccccCCCccEEE
Q 026558 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVR----QM----DEFQTGSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~----~~----~~~~~~~fD~I~ 118 (237)
.+||-+|+|. |..+..+++. |..+++++|.+++.++.+++.-. ..++ |.. ++ .....+.+|+|+
T Consensus 195 ~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa----~~vi--~~~~~~~~~~~~i~~~~~gg~D~vi 268 (378)
T 3uko_A 195 SNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGV----NEFV--NPKDHDKPIQEVIVDLTDGGVDYSF 268 (378)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTC----CEEE--CGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC----cEEE--ccccCchhHHHHHHHhcCCCCCEEE
Confidence 4899999865 6777777765 33489999999999998876421 1222 221 11 112234899999
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCC-cEEEEEEc
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTY 158 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 158 (237)
....- ...++.+.+.|++| |++++.-.
T Consensus 269 d~~g~-------------~~~~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 269 ECIGN-------------VSVMRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp ECSCC-------------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred ECCCC-------------HHHHHHHHHHhhccCCEEEEEcc
Confidence 74221 34578889999997 99887653
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.13 Score=43.63 Aligned_cols=98 Identities=11% Similarity=0.112 Sum_probs=58.7
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc----cc-cCCCccEEEecc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----EF-QTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~----~~-~~~~fD~I~~~~ 121 (237)
.+||-+|+|. |..+..+++.... +++++|.++..++.+++.-. ..++..+-.++. .. ....+|+|+...
T Consensus 215 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa----~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~ 290 (404)
T 3ip1_A 215 DNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGA----DHVIDPTKENFVEAVLDYTNGLGAKLFLEAT 290 (404)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTC----SEEECTTTSCHHHHHHHHTTTCCCSEEEECS
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC----CEEEcCCCCCHHHHHHHHhCCCCCCEEEECC
Confidence 3899999865 6677777766444 89999999999999887631 122211111111 11 234799999743
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.-. ......+++.+.+.++++|++++.-.
T Consensus 291 g~~--------~~~~~~~~~~l~~~~~~~G~iv~~G~ 319 (404)
T 3ip1_A 291 GVP--------QLVWPQIEEVIWRARGINATVAIVAR 319 (404)
T ss_dssp SCH--------HHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred CCc--------HHHHHHHHHHHHhccCCCcEEEEeCC
Confidence 211 01223333334455699999988643
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=95.34 E-value=0.11 Score=43.79 Aligned_cols=50 Identities=14% Similarity=0.214 Sum_probs=36.6
Q ss_pred cEEEEccCCchhHHHHHHc--------CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEE
Q 026558 50 RILIVGCGNSAFSEGMVDD--------GYEDVVNVDISSVVIEAMMKKYSNRPQLKYI 99 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~--------~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~ 99 (237)
.|+|+|+|+|.+...+++. ...+++.||+|+...+.=++++....++.+.
T Consensus 83 ~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~~v~W~ 140 (387)
T 1zkd_A 83 RLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHWH 140 (387)
T ss_dssp EEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEEEE
T ss_pred EEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCCCCeEEe
Confidence 7999999999998877542 1238999999998888766666543334443
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.076 Score=44.91 Aligned_cols=104 Identities=11% Similarity=0.129 Sum_probs=62.3
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc-----cccc-cCCCccEEEec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-----MDEF-QTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-----~~~~-~~~~fD~I~~~ 120 (237)
.+||-+|+|. |..+..+++.... .++++|.+++.++.+++.- .+.+...-.+ +... ....+|+|+..
T Consensus 187 ~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lG-----a~~i~~~~~~~~~~~v~~~t~g~g~Dvvid~ 261 (398)
T 1kol_A 187 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG-----FEIADLSLDTPLHEQIAALLGEPEVDCAVDA 261 (398)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT-----CEEEETTSSSCHHHHHHHHHSSSCEEEEEEC
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcC-----CcEEccCCcchHHHHHHHHhCCCCCCEEEEC
Confidence 3899999876 7777788776433 7999999999999987642 2322211111 1111 23479999985
Q ss_pred cccceeccCC--CChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 121 GTLDSLLCGS--NSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 121 ~~l~~~~~~~--~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
..-....... .........++.+.++|+++|++++..
T Consensus 262 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 262 VGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp CCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred CCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence 4321000000 000112346788899999999997754
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.12 Score=42.98 Aligned_cols=92 Identities=15% Similarity=0.098 Sum_probs=59.7
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccc-ccc----cc-cc---CCCccEEE
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDV-RQM----DE-FQ---TGSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~-~~~----~~-~~---~~~fD~I~ 118 (237)
.+||-+|+|. |..+..+++....+++++|.+++.++.+++.-. . .++..+- .+. .. .. ...+|+|+
T Consensus 170 ~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa---~-~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vi 245 (352)
T 1e3j_A 170 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGA---D-VTLVVDPAKEEESSIIERIRSAIGDLPNVTI 245 (352)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC---S-EEEECCTTTSCHHHHHHHHHHHSSSCCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCC---C-EEEcCcccccHHHHHHHHhccccCCCCCEEE
Confidence 3899999865 667777776544479999999999998875421 1 2222110 111 10 11 35799998
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
....- ...++.+.++|+++|+++...
T Consensus 246 d~~g~-------------~~~~~~~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 246 DCSGN-------------EKCITIGINITRTGGTLMLVG 271 (352)
T ss_dssp ECSCC-------------HHHHHHHHHHSCTTCEEEECS
T ss_pred ECCCC-------------HHHHHHHHHHHhcCCEEEEEe
Confidence 75321 235677889999999998764
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.16 E-value=0.061 Score=45.27 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=60.5
Q ss_pred CcEEEEccCC-chhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcc---ccc----cccc-cCCCccEEE
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD---VRQ----MDEF-QTGSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d---~~~----~~~~-~~~~fD~I~ 118 (237)
.+||-+|+|. |..+..+++... .++++++.+++.++.+++.-. ..++..+ -.+ +... ....+|+|+
T Consensus 197 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa----~~vi~~~~~~~~~~~~~v~~~~~g~g~Dvvi 272 (380)
T 1vj0_A 197 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA----DLTLNRRETSVEERRKAIMDITHGRGADFIL 272 (380)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC----SEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCC----cEEEeccccCcchHHHHHHHHhCCCCCcEEE
Confidence 4899999765 677777777654 499999999999998885421 1223222 111 1111 223699998
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
....- ...++.+.++|+++|+++..-.
T Consensus 273 d~~g~-------------~~~~~~~~~~l~~~G~iv~~G~ 299 (380)
T 1vj0_A 273 EATGD-------------SRALLEGSELLRRGGFYSVAGV 299 (380)
T ss_dssp ECSSC-------------TTHHHHHHHHEEEEEEEEECCC
T ss_pred ECCCC-------------HHHHHHHHHHHhcCCEEEEEec
Confidence 75321 1246778899999999887643
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.019 Score=47.44 Aligned_cols=65 Identities=15% Similarity=0.083 Sum_probs=45.8
Q ss_pred CcEEEEccccc-cccccCCCccEEEeccccceeccC-CCC------hHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 95 QLKYIKMDVRQ-MDEFQTGSFDSVVDKGTLDSLLCG-SNS------RQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 95 ~~~~~~~d~~~-~~~~~~~~fD~I~~~~~l~~~~~~-~~~------~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
...++++|+.+ +..+++++||+|+++.+....... ... .......++++.++|+|||.+++....
T Consensus 14 ~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d 86 (323)
T 1boo_A 14 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG 86 (323)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECC
Confidence 56889999876 333567899999999876432100 000 124677899999999999999887643
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=95.04 E-value=0.037 Score=46.20 Aligned_cols=94 Identities=18% Similarity=0.175 Sum_probs=58.4
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccc-ccc-cccCCCccEEEeccccce
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVR-QMD-EFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-~~~-~~~~~~fD~I~~~~~l~~ 125 (237)
.+||-+|+|. |..+..+++....++++++.+++.++.+++.-. ..++..+-. +.. ... +.+|+|+....-
T Consensus 181 ~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa----~~v~~~~~~~~~~~~~~-~~~D~vid~~g~-- 253 (360)
T 1piw_A 181 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGA----DHYIATLEEGDWGEKYF-DTFDLIVVCASS-- 253 (360)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTC----SEEEEGGGTSCHHHHSC-SCEEEEEECCSC--
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCC----CEEEcCcCchHHHHHhh-cCCCEEEECCCC--
Confidence 3999999855 666667766533489999999998888887421 122221111 111 112 579999875322
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
. + ...++.+.++|+++|+++....
T Consensus 254 ~-----~----~~~~~~~~~~l~~~G~iv~~g~ 277 (360)
T 1piw_A 254 L-----T----DIDFNIMPKAMKVGGRIVSISI 277 (360)
T ss_dssp S-----T----TCCTTTGGGGEEEEEEEEECCC
T ss_pred C-----c----HHHHHHHHHHhcCCCEEEEecC
Confidence 0 0 1135567889999999887543
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.095 Score=43.87 Aligned_cols=90 Identities=10% Similarity=0.095 Sum_probs=59.6
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc----cc----cccCCCccEEE
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ----MD----EFQTGSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~----~~----~~~~~~fD~I~ 118 (237)
.+||-+|+|. |..+..+++.... +++++|.+++.++.+++.-. ..++ |..+ +. ....+.+|+|+
T Consensus 193 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa----~~vi--~~~~~~~~~~~~i~~~t~gg~Dvvi 266 (373)
T 1p0f_A 193 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA----TECL--NPKDYDKPIYEVICEKTNGGVDYAV 266 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTC----SEEE--CGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC----cEEE--ecccccchHHHHHHHHhCCCCCEEE
Confidence 3899999865 6677777765333 89999999999998875421 1222 2211 11 11234799998
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCC-cEEEEEE
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVT 157 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~ 157 (237)
....- ...++.+.++|+++ |+++..-
T Consensus 267 d~~g~-------------~~~~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 267 ECAGR-------------IETMMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp ECSCC-------------HHHHHHHHHTBCTTTCEEEECC
T ss_pred ECCCC-------------HHHHHHHHHHHhcCCCEEEEEc
Confidence 74221 23577889999999 9988764
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.03 Score=47.80 Aligned_cols=56 Identities=7% Similarity=0.160 Sum_probs=44.0
Q ss_pred CcEEEEccCCchhHHHHH-HcC--CCeEEEEeCCHHHHHHHHHHcCC-----C-CCcEEEEcccc
Q 026558 49 QRILIVGCGNSAFSEGMV-DDG--YEDVVNVDISSVVIEAMMKKYSN-----R-PQLKYIKMDVR 104 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~-~~~--~~~~~~vD~s~~~~~~a~~~~~~-----~-~~~~~~~~d~~ 104 (237)
..++|+|++.|..+..++ +.+ ..+|+++|.+|...+.++++.+. . +++.++...+.
T Consensus 228 ~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~ 292 (409)
T 2py6_A 228 EKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG 292 (409)
T ss_dssp CEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred CEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence 499999999999999887 443 25999999999999999988743 3 56666655443
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.11 Score=43.39 Aligned_cols=91 Identities=12% Similarity=0.174 Sum_probs=60.1
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc----cc----cccCCCccEEE
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ----MD----EFQTGSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~----~~----~~~~~~fD~I~ 118 (237)
.+||-+|+|. |..+..+++.... +++++|.+++.++.+++.-. ..++ |..+ +. ....+.+|+|+
T Consensus 194 ~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa----~~vi--~~~~~~~~~~~~~~~~~~~g~D~vi 267 (374)
T 1cdo_A 194 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA----TDFV--NPNDHSEPISQVLSKMTNGGVDFSL 267 (374)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC----CEEE--CGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCC----ceEE--eccccchhHHHHHHHHhCCCCCEEE
Confidence 3899999865 6677777775444 79999999999998875421 1222 2221 11 11234799998
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCC-cEEEEEEc
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTY 158 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 158 (237)
....- ...++.+.++|+++ |++++...
T Consensus 268 d~~g~-------------~~~~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 268 ECVGN-------------VGVMRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp ECSCC-------------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred ECCCC-------------HHHHHHHHHHhhcCCcEEEEEcC
Confidence 74321 23577889999999 99887643
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.11 Score=43.55 Aligned_cols=91 Identities=15% Similarity=0.118 Sum_probs=60.2
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc----cc----cccCCCccEEE
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ----MD----EFQTGSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~----~~----~~~~~~fD~I~ 118 (237)
.+||-+|+|. |..+..+++.... +++++|.+++.++.+++.-. ..++ |..+ +. ....+.+|+|+
T Consensus 197 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa----~~vi--~~~~~~~~~~~~v~~~~~~g~Dvvi 270 (376)
T 1e3i_A 197 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA----TDCL--NPRELDKPVQDVITELTAGGVDYSL 270 (376)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC----SEEE--CGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC----cEEE--ccccccchHHHHHHHHhCCCccEEE
Confidence 3899999865 6777777776444 89999999999998875421 1222 2221 11 11224799998
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCC-cEEEEEEc
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTY 158 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 158 (237)
....- ...++.+.+.|+++ |++++...
T Consensus 271 d~~G~-------------~~~~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 271 DCAGT-------------AQTLKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp ESSCC-------------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred ECCCC-------------HHHHHHHHHHhhcCCCEEEEECC
Confidence 74221 24578889999999 99887643
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=94.93 E-value=0.13 Score=42.97 Aligned_cols=90 Identities=12% Similarity=0.147 Sum_probs=59.5
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc----cc----cccCCCccEEE
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ----MD----EFQTGSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~----~~----~~~~~~fD~I~ 118 (237)
.+||-+|+|. |..+..+++.... +++++|.+++.++.+++.-. ..++ |..+ +. ....+.+|+|+
T Consensus 193 ~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa----~~vi--~~~~~~~~~~~~~~~~~~~g~D~vi 266 (374)
T 2jhf_A 193 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA----TECV--NPQDYKKPIQEVLTEMSNGGVDFSF 266 (374)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC----SEEE--CGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC----ceEe--cccccchhHHHHHHHHhCCCCcEEE
Confidence 3899999865 6677777765444 89999999999998875421 1222 2221 11 11234799998
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCC-cEEEEEE
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVT 157 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~ 157 (237)
....- ...++.+.++|+++ |++++.-
T Consensus 267 d~~g~-------------~~~~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 267 EVIGR-------------LDTMVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp ECSCC-------------HHHHHHHHHHBCTTTCEEEECS
T ss_pred ECCCC-------------HHHHHHHHHHhhcCCcEEEEec
Confidence 74321 23577889999999 9988754
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.17 Score=48.03 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=58.4
Q ss_pred cEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc--------------cc-cCCC
Q 026558 50 RILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD--------------EF-QTGS 113 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~--------------~~-~~~~ 113 (237)
++|||-||.|.++.-+.+.|. ..+.++|+++.+++.-+.++ ++..++..|+.++. .+ ..+.
T Consensus 542 ~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~---p~~~~~~~DI~~l~~~~~~~di~~~~~~~lp~~~~ 618 (1002)
T 3swr_A 542 RTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN---PGSTVFTEDCNILLKLVMAGETTNSRGQRLPQKGD 618 (1002)
T ss_dssp EEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC---TTSEEECSCHHHHHHHHHHTCSBCTTCCBCCCTTT
T ss_pred eEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC---CCCccccccHHHHhhhccchhhhhhhhhhcccCCC
Confidence 899999999999999988886 57889999999999999887 45667777764321 02 2357
Q ss_pred ccEEEecccccee
Q 026558 114 FDSVVDKGTLDSL 126 (237)
Q Consensus 114 fD~I~~~~~l~~~ 126 (237)
+|+|+...+.+.+
T Consensus 619 vDll~GGpPCQ~F 631 (1002)
T 3swr_A 619 VEMLCGGPPCQGF 631 (1002)
T ss_dssp CSEEEECCCCTTC
T ss_pred eeEEEEcCCCcch
Confidence 9999998887765
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.057 Score=44.70 Aligned_cols=90 Identities=11% Similarity=0.156 Sum_probs=59.8
Q ss_pred CcEEEEccCC-chhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc---c-cccc-CCCccEEEec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ---M-DEFQ-TGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~---~-~~~~-~~~fD~I~~~ 120 (237)
.+||-+|+|. |..+..+++.. ..++++++.+++.++.+++.-. ..++ |..+ . .... ...+|+|+..
T Consensus 172 ~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa----~~vi--~~~~~~~~~~~~~~g~g~D~vid~ 245 (344)
T 2h6e_A 172 PVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGA----DYVS--EMKDAESLINKLTDGLGASIAIDL 245 (344)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTC----SEEE--CHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCC----CEEe--ccccchHHHHHhhcCCCccEEEEC
Confidence 3999999865 66667777653 3589999999999999886521 1222 2211 1 1112 2379999875
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
..- ...++.+.++|+++|+++...
T Consensus 246 ~g~-------------~~~~~~~~~~l~~~G~iv~~g 269 (344)
T 2h6e_A 246 VGT-------------EETTYNLGKLLAQEGAIILVG 269 (344)
T ss_dssp SCC-------------HHHHHHHHHHEEEEEEEEECC
T ss_pred CCC-------------hHHHHHHHHHhhcCCEEEEeC
Confidence 321 235778899999999988754
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.077 Score=44.19 Aligned_cols=89 Identities=16% Similarity=0.231 Sum_probs=58.8
Q ss_pred CcEEEEccCC-chhH-HHHH-HcCCCe-EEEEeCCHH---HHHHHHHHcCCCCCcEEEEccccc-----cccccCCCccE
Q 026558 49 QRILIVGCGN-SAFS-EGMV-DDGYED-VVNVDISSV---VIEAMMKKYSNRPQLKYIKMDVRQ-----MDEFQTGSFDS 116 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~-~~~~-~~~~~~-~~~vD~s~~---~~~~a~~~~~~~~~~~~~~~d~~~-----~~~~~~~~fD~ 116 (237)
.+||-+|+|. |..+ ..++ +....+ +++++.+++ .++.+++.- ...+ |..+ .... .+.+|+
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lG-----a~~v--~~~~~~~~~i~~~-~gg~Dv 245 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELD-----ATYV--DSRQTPVEDVPDV-YEQMDF 245 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTT-----CEEE--ETTTSCGGGHHHH-SCCEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcC-----Cccc--CCCccCHHHHHHh-CCCCCE
Confidence 3899999855 6777 7777 654335 999999988 888887542 2222 3221 1112 237999
Q ss_pred EEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 117 I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
|+....- ...++.+.++|+++|+++....
T Consensus 246 vid~~g~-------------~~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 246 IYEATGF-------------PKHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp EEECSCC-------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred EEECCCC-------------hHHHHHHHHHHhcCCEEEEEeC
Confidence 9874221 2357788999999999887643
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=94.76 E-value=0.2 Score=41.24 Aligned_cols=89 Identities=17% Similarity=0.183 Sum_probs=58.7
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc--cc----cccCCCccEEEecc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ--MD----EFQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~--~~----~~~~~~fD~I~~~~ 121 (237)
.+||-+|+|. |..+..+++....++++++.++..++.+++.-. ..+ .|..+ +. ... +.+|+|+...
T Consensus 166 ~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa----~~~--~d~~~~~~~~~~~~~~-~~~d~vid~~ 238 (339)
T 1rjw_A 166 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGA----DLV--VNPLKEDAAKFMKEKV-GGVHAAVVTA 238 (339)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC----SEE--ECTTTSCHHHHHHHHH-SSEEEEEESS
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCC----CEE--ecCCCccHHHHHHHHh-CCCCEEEECC
Confidence 3899999864 666666666543499999999999998875321 112 13221 11 011 4799998753
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.. ...++.+.++|+++|+++...
T Consensus 239 g~-------------~~~~~~~~~~l~~~G~~v~~g 261 (339)
T 1rjw_A 239 VS-------------KPAFQSAYNSIRRGGACVLVG 261 (339)
T ss_dssp CC-------------HHHHHHHHHHEEEEEEEEECC
T ss_pred CC-------------HHHHHHHHHHhhcCCEEEEec
Confidence 21 235778889999999988764
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.13 Score=42.97 Aligned_cols=90 Identities=13% Similarity=0.122 Sum_probs=59.5
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc----c----ccccCCCccEEE
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ----M----DEFQTGSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~----~----~~~~~~~fD~I~ 118 (237)
.+||-+|+|. |..+..+++.... +++++|.+++.++.+++.-. ..++ |..+ + .....+.+|+|+
T Consensus 192 ~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa----~~vi--~~~~~~~~~~~~v~~~~~~g~D~vi 265 (373)
T 2fzw_A 192 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA----TECI--NPQDFSKPIQEVLIEMTDGGVDYSF 265 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC----SEEE--CGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC----ceEe--ccccccccHHHHHHHHhCCCCCEEE
Confidence 3899999865 6666777665333 79999999999998886521 1222 2221 1 111234799998
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCC-cEEEEEE
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVT 157 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~ 157 (237)
....- ...++.+.+.|+++ |++++..
T Consensus 266 d~~g~-------------~~~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 266 ECIGN-------------VKVMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp ECSCC-------------HHHHHHHHHTBCTTTCEEEECS
T ss_pred ECCCc-------------HHHHHHHHHhhccCCcEEEEEe
Confidence 74321 23577889999999 9998764
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.096 Score=43.33 Aligned_cols=92 Identities=13% Similarity=0.129 Sum_probs=61.7
Q ss_pred CcEEEEccCC-chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc----cc-cCCCccEEEecc
Q 026558 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----EF-QTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~----~~-~~~~fD~I~~~~ 121 (237)
.+||-+|+|. |..+..+++. +..+++++|.+++.++.+++.-. ..++..+- +.. .. ....+|+|+...
T Consensus 173 ~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa----~~~i~~~~-~~~~~v~~~t~g~g~d~v~d~~ 247 (345)
T 3jv7_A 173 STAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGA----DAAVKSGA-GAADAIRELTGGQGATAVFDFV 247 (345)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTC----SEEEECST-THHHHHHHHHGGGCEEEEEESS
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC----CEEEcCCC-cHHHHHHHHhCCCCCeEEEECC
Confidence 3899999866 7777777765 35699999999999999877531 12222111 111 01 234799998742
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.- ...++.+.++|+++|++++...
T Consensus 248 G~-------------~~~~~~~~~~l~~~G~iv~~G~ 271 (345)
T 3jv7_A 248 GA-------------QSTIDTAQQVVAVDGHISVVGI 271 (345)
T ss_dssp CC-------------HHHHHHHHHHEEEEEEEEECSC
T ss_pred CC-------------HHHHHHHHHHHhcCCEEEEECC
Confidence 21 2367888999999999987643
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.037 Score=50.45 Aligned_cols=102 Identities=12% Similarity=0.087 Sum_probs=62.5
Q ss_pred cEEEEccCCchhHHHHHHcC-------------CCeEEEEeC---CHHHHHHHHHH--------------cC--------
Q 026558 50 RILIVGCGNSAFSEGMVDDG-------------YEDVVNVDI---SSVVIEAMMKK--------------YS-------- 91 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~-------------~~~~~~vD~---s~~~~~~a~~~--------------~~-------- 91 (237)
+|+|+|.|+|.....+.+.. ..+++.+|. +.+.+..+-.. ..
T Consensus 61 ~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~r 140 (689)
T 3pvc_A 61 IFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGCHR 140 (689)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEEEE
T ss_pred EEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCceE
Confidence 89999999998776654421 136899999 44444432211 10
Q ss_pred -----CCCCcEEEEccccccc-ccc---CCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEE
Q 026558 92 -----NRPQLKYIKMDVRQMD-EFQ---TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (237)
Q Consensus 92 -----~~~~~~~~~~d~~~~~-~~~---~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 155 (237)
+.-.+++..+|+.+.. .+. ...+|+++.++.--.. ++.-=...++..+.++++|||.+..
T Consensus 141 ~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~----np~~w~~~~~~~l~~~~~~g~~~~t 209 (689)
T 3pvc_A 141 ILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAK----NPDMWNEQLFNAMARMTRPGGTFST 209 (689)
T ss_dssp EEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC------CCTTCSHHHHHHHHHHEEEEEEEEE
T ss_pred EEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCC----ChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 0013456778886542 222 4789999987632111 1111236789999999999998654
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.19 Score=41.35 Aligned_cols=92 Identities=12% Similarity=0.081 Sum_probs=58.7
Q ss_pred CcEEEEccC--CchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc----cccCCCccEEEeccc
Q 026558 49 QRILIVGCG--NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----EFQTGSFDSVVDKGT 122 (237)
Q Consensus 49 ~~iLdlG~G--~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~----~~~~~~fD~I~~~~~ 122 (237)
.+||-.|++ .|..+..+++....++++++.+++.++.+.+.+.. ..++...-.+.. ....+.+|+|+....
T Consensus 151 ~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g 227 (336)
T 4b7c_A 151 ETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGF---DGAIDYKNEDLAAGLKRECPKGIDVFFDNVG 227 (336)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCC---SEEEETTTSCHHHHHHHHCTTCEEEEEESSC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCC---CEEEECCCHHHHHHHHHhcCCCceEEEECCC
Confidence 489999983 36666666665434999999999998888444421 122211111111 112357999987432
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...+..+.+.|+++|++++..
T Consensus 228 --------------~~~~~~~~~~l~~~G~iv~~G 248 (336)
T 4b7c_A 228 --------------GEILDTVLTRIAFKARIVLCG 248 (336)
T ss_dssp --------------HHHHHHHHTTEEEEEEEEECC
T ss_pred --------------cchHHHHHHHHhhCCEEEEEe
Confidence 136788899999999998764
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.19 Score=46.49 Aligned_cols=51 Identities=20% Similarity=0.217 Sum_probs=41.4
Q ss_pred cEEEEccCCchhHHHHHHcC------CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccc
Q 026558 50 RILIVGCGNSAFSEGMVDDG------YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDV 103 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~------~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~ 103 (237)
+||||-||.|.++.-+.+.| +..+.++|+++.+++.-+.|+ ++..+.+.|+
T Consensus 214 tvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh---p~~~~~~~di 270 (784)
T 4ft4_B 214 TLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH---PQTEVRNEKA 270 (784)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC---TTSEEEESCH
T ss_pred eEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC---CCCceecCcH
Confidence 89999999999988887665 447889999999999999987 4455555555
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.073 Score=44.37 Aligned_cols=92 Identities=23% Similarity=0.272 Sum_probs=56.9
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc-cccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM-DVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~-d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+||-+|+|. |..+..+++....++++++.+++.++.+++.+.. . .++.. +....... .+.+|+|+....-.
T Consensus 182 ~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa-~--~vi~~~~~~~~~~~-~~g~D~vid~~g~~-- 255 (357)
T 2cf5_A 182 LRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGA-D--DYVIGSDQAKMSEL-ADSLDYVIDTVPVH-- 255 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCC-S--CEEETTCHHHHHHS-TTTEEEEEECCCSC--
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCC-c--eeeccccHHHHHHh-cCCCCEEEECCCCh--
Confidence 4899999765 6666666665334999999999888888755421 1 12211 11111111 24699998753211
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
..++.+.++|+++|+++...
T Consensus 256 -----------~~~~~~~~~l~~~G~iv~~G 275 (357)
T 2cf5_A 256 -----------HALEPYLSLLKLDGKLILMG 275 (357)
T ss_dssp -----------CCSHHHHTTEEEEEEEEECS
T ss_pred -----------HHHHHHHHHhccCCEEEEeC
Confidence 12456778999999998764
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.14 Score=42.77 Aligned_cols=93 Identities=24% Similarity=0.312 Sum_probs=57.3
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc-cccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM-DVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~-d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+||-+|+|. |.....+++....++++++.++..++.+++.+.. ..++.. +....... .+.+|+|+.......
T Consensus 189 ~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa---~~v~~~~~~~~~~~~-~~~~D~vid~~g~~~- 263 (366)
T 1yqd_A 189 KHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGA---DSFLVSRDQEQMQAA-AGTLDGIIDTVSAVH- 263 (366)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCC---SEEEETTCHHHHHHT-TTCEEEEEECCSSCC-
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCC---ceEEeccCHHHHHHh-hCCCCEEEECCCcHH-
Confidence 4899999754 5666666665444999999999888887755521 122211 11111111 247999987533211
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.++.+.+.|+++|+++....
T Consensus 264 ------------~~~~~~~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 264 ------------PLLPLFGLLKSHGKLILVGA 283 (366)
T ss_dssp ------------CSHHHHHHEEEEEEEEECCC
T ss_pred ------------HHHHHHHHHhcCCEEEEEcc
Confidence 24566788999999887643
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.45 E-value=0.11 Score=39.14 Aligned_cols=88 Identities=17% Similarity=0.169 Sum_probs=54.5
Q ss_pred CcEEEEccC--CchhHHHHHH-cCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc------c-ccCCCccEEE
Q 026558 49 QRILIVGCG--NSAFSEGMVD-DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD------E-FQTGSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G--~G~~~~~~~~-~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~------~-~~~~~fD~I~ 118 (237)
.+||..|++ .|.....++. .|. +++++|.+++.++.+++. + .. ... |..+.. . .....+|+++
T Consensus 40 ~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~~--g-~~-~~~--d~~~~~~~~~~~~~~~~~~~D~vi 112 (198)
T 1pqw_A 40 ERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRL--G-VE-YVG--DSRSVDFADEILELTDGYGVDVVL 112 (198)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTT--C-CS-EEE--ETTCSTHHHHHHHHTTTCCEEEEE
T ss_pred CEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc--C-CC-EEe--eCCcHHHHHHHHHHhCCCCCeEEE
Confidence 389999953 3444444444 354 899999999888777643 1 11 111 322211 0 1234699998
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+.. ...++.+.+.|+++|+++...
T Consensus 113 ~~~g--------------~~~~~~~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 113 NSLA--------------GEAIQRGVQILAPGGRFIELG 137 (198)
T ss_dssp ECCC--------------THHHHHHHHTEEEEEEEEECS
T ss_pred ECCc--------------hHHHHHHHHHhccCCEEEEEc
Confidence 6431 135778899999999988764
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.13 Score=42.28 Aligned_cols=91 Identities=12% Similarity=0.116 Sum_probs=58.4
Q ss_pred CcEEEEcc-C-CchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc----c-ccCCCccEEEecc
Q 026558 49 QRILIVGC-G-NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----E-FQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~-G-~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~----~-~~~~~fD~I~~~~ 121 (237)
.+||-.|+ | .|..+..+++....++++++.+++.++.+++.- ...++..+-.+.. . .....+|+|+...
T Consensus 150 ~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g----a~~~~~~~~~~~~~~~~~~~~~~g~D~vid~~ 225 (334)
T 3qwb_A 150 DYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYG----AEYLINASKEDILRQVLKFTNGKGVDASFDSV 225 (334)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT----CSEEEETTTSCHHHHHHHHTTTSCEEEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC----CcEEEeCCCchHHHHHHHHhCCCCceEEEECC
Confidence 38999994 3 366666666654459999999999998887642 1122221111111 0 1235799998753
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.- ..++.+.++|+++|+++..-
T Consensus 226 g~--------------~~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 226 GK--------------DTFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp GG--------------GGHHHHHHHEEEEEEEEECC
T ss_pred Ch--------------HHHHHHHHHhccCCEEEEEc
Confidence 21 35777889999999998764
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.22 Score=41.24 Aligned_cols=93 Identities=14% Similarity=0.116 Sum_probs=59.7
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc----cc-cCCCccEEEecc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----EF-QTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~----~~-~~~~fD~I~~~~ 121 (237)
.+||-+|+|. |..+..+++.... ++++++.+++.++.+++.-. ..++..+-.++. .. ....+|+|+...
T Consensus 169 ~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga----~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~ 244 (348)
T 2d8a_A 169 KSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGA----DYVINPFEEDVVKEVMDITDGNGVDVFLEFS 244 (348)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTC----SEEECTTTSCHHHHHHHHTTTSCEEEEEECS
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC----CEEECCCCcCHHHHHHHHcCCCCCCEEEECC
Confidence 4899999854 6666666665444 89999999999888876521 112211111111 01 124699998753
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.. ...++.+.++|+++|+++....
T Consensus 245 g~-------------~~~~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 245 GA-------------PKALEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp CC-------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred CC-------------HHHHHHHHHHHhcCCEEEEEcc
Confidence 21 2357788899999999887643
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.41 Score=35.48 Aligned_cols=93 Identities=17% Similarity=0.187 Sum_probs=57.7
Q ss_pred cEEEEccCC-chhH-HHHHHc-CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc---cc-cCCCccEEEeccc
Q 026558 50 RILIVGCGN-SAFS-EGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD---EF-QTGSFDSVVDKGT 122 (237)
Q Consensus 50 ~iLdlG~G~-G~~~-~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~---~~-~~~~fD~I~~~~~ 122 (237)
+|+-+|+|. |... ..+.+. +. +++++|.+++.++.+++. ++.++.+|..+.. .. .-..+|+|+....
T Consensus 41 ~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~~-----g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~ 114 (183)
T 3c85_A 41 QVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRSE-----GRNVISGDATDPDFWERILDTGHVKLVLLAMP 114 (183)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHHT-----TCCEEECCTTCHHHHHTBCSCCCCCEEEECCS
T ss_pred cEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHHC-----CCCEEEcCCCCHHHHHhccCCCCCCEEEEeCC
Confidence 899998865 4333 334445 65 899999999888877653 3567777776532 12 2356899987422
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+ ......+-.+.+.+.|++.++....
T Consensus 115 ---------~-~~~~~~~~~~~~~~~~~~~ii~~~~ 140 (183)
T 3c85_A 115 ---------H-HQGNQTALEQLQRRNYKGQIAAIAE 140 (183)
T ss_dssp ---------S-HHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred ---------C-hHHHHHHHHHHHHHCCCCEEEEEEC
Confidence 1 2222233345666777777776653
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.14 Score=42.10 Aligned_cols=89 Identities=13% Similarity=0.162 Sum_probs=56.1
Q ss_pred CcEEEEcc--CCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc---cc----cccCCCccEEEe
Q 026558 49 QRILIVGC--GNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ---MD----EFQTGSFDSVVD 119 (237)
Q Consensus 49 ~~iLdlG~--G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~---~~----~~~~~~fD~I~~ 119 (237)
.+||-.|+ |.|..+..++.....+++++|.+++.++.+++ +.. . .. .|..+ .. ....+.+|+++.
T Consensus 147 ~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~-~g~--~-~~--~d~~~~~~~~~~~~~~~~~~~d~vi~ 220 (333)
T 1v3u_A 147 ETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ-IGF--D-AA--FNYKTVNSLEEALKKASPDGYDCYFD 220 (333)
T ss_dssp CEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TTC--S-EE--EETTSCSCHHHHHHHHCTTCEEEEEE
T ss_pred CEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-cCC--c-EE--EecCCHHHHHHHHHHHhCCCCeEEEE
Confidence 48999997 33555555555433499999999998888844 311 1 11 13322 11 112257999987
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+.. . ..++.+.++|+++|++++..
T Consensus 221 ~~g-----------~---~~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 221 NVG-----------G---EFLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp SSC-----------H---HHHHHHHTTEEEEEEEEECC
T ss_pred CCC-----------h---HHHHHHHHHHhcCCEEEEEe
Confidence 532 1 24778889999999998754
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.049 Score=44.49 Aligned_cols=85 Identities=20% Similarity=0.219 Sum_probs=56.1
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+||-+|+|. |..+..+++....++++++ +++.++.+++.- ...+..| .... ...+|+|+....-
T Consensus 144 ~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lG-----a~~v~~d---~~~v-~~g~Dvv~d~~g~---- 209 (315)
T 3goh_A 144 REVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRG-----VRHLYRE---PSQV-TQKYFAIFDAVNS---- 209 (315)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHT-----EEEEESS---GGGC-CSCEEEEECC-------
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcC-----CCEEEcC---HHHh-CCCccEEEECCCc----
Confidence 4999999954 7777777765434999999 998889887752 2222223 2213 5679999864210
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
..+..+.++|+++|+++...
T Consensus 210 ----------~~~~~~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 210 ----------QNAAALVPSLKANGHIICIQ 229 (315)
T ss_dssp --------------TTGGGEEEEEEEEEEC
T ss_pred ----------hhHHHHHHHhcCCCEEEEEe
Confidence 12356789999999998774
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.12 Score=42.27 Aligned_cols=92 Identities=10% Similarity=0.010 Sum_probs=58.7
Q ss_pred CcEEEEc-cCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc----c-ccCCCccEEEecc
Q 026558 49 QRILIVG-CGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----E-FQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG-~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~----~-~~~~~fD~I~~~~ 121 (237)
.+||-.| +|. |..+..+++....++++++.+++.++.+++.-. ..++..+-.++. . .....+|+|+...
T Consensus 142 ~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga----~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~ 217 (325)
T 3jyn_A 142 EIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGA----WETIDYSHEDVAKRVLELTDGKKCPVVYDGV 217 (325)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC----SEEEETTTSCHHHHHHHHTTTCCEEEEEESS
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC----CEEEeCCCccHHHHHHHHhCCCCceEEEECC
Confidence 3899988 333 666666666533499999999999998886521 122221111111 0 1235799998753
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.- ..+..+.++|+++|++++...
T Consensus 218 g~--------------~~~~~~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 218 GQ--------------DTWLTSLDSVAPRGLVVSFGN 240 (325)
T ss_dssp CG--------------GGHHHHHTTEEEEEEEEECCC
T ss_pred Ch--------------HHHHHHHHHhcCCCEEEEEec
Confidence 21 246778899999999988653
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.17 Score=41.72 Aligned_cols=92 Identities=13% Similarity=0.134 Sum_probs=57.4
Q ss_pred CcEEEEccCC--chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc----c-ccCCCccEEEecc
Q 026558 49 QRILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----E-FQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~--G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~----~-~~~~~fD~I~~~~ 121 (237)
.+||-.|+|. |..+..+++....++++++.+++.++.+++.-. ..++...-.++. . .....+|+|+...
T Consensus 146 ~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga----~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~ 221 (340)
T 3gms_A 146 DVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGA----AYVIDTSTAPLYETVMELTNGIGADAAIDSI 221 (340)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTC----SEEEETTTSCHHHHHHHHTTTSCEEEEEESS
T ss_pred CEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCC----cEEEeCCcccHHHHHHHHhCCCCCcEEEECC
Confidence 4999999874 666666666433499999999998888887531 122211111111 0 1234799998753
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.- .. +....++|+++|++++...
T Consensus 222 g~----------~~----~~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 222 GG----------PD----GNELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp CH----------HH----HHHHHHTEEEEEEEEECCC
T ss_pred CC----------hh----HHHHHHHhcCCCEEEEEee
Confidence 21 11 2334589999999988653
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.39 Score=39.29 Aligned_cols=91 Identities=18% Similarity=0.227 Sum_probs=59.8
Q ss_pred CcEEEEccCC-c-hhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc-cccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGN-S-AFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-MDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~-G-~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|.=||+|. | .++..+.+.|.. +|+++|.+++.++.+++.- -+.-...|..+ . -...|+|+..-+.
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G----~~~~~~~~~~~~~----~~~aDvVilavp~- 104 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG----IIDEGTTSIAKVE----DFSPDFVMLSSPV- 104 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT----SCSEEESCTTGGG----GGCCSEEEECSCG-
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCC----CcchhcCCHHHHh----hccCCEEEEeCCH-
Confidence 3799999887 3 455556666643 8999999999888877542 11112233333 2 2457999886433
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.....+++++...++++.+++-..
T Consensus 105 ---------~~~~~vl~~l~~~l~~~~iv~d~~ 128 (314)
T 3ggo_A 105 ---------RTFREIAKKLSYILSEDATVTDQG 128 (314)
T ss_dssp ---------GGHHHHHHHHHHHSCTTCEEEECC
T ss_pred ---------HHHHHHHHHHhhccCCCcEEEECC
Confidence 445778889999999987665443
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.81 Score=37.56 Aligned_cols=93 Identities=13% Similarity=0.142 Sum_probs=59.3
Q ss_pred CcEEEEccCC-chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc-----ccCCCccEEEecc
Q 026558 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE-----FQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~-----~~~~~fD~I~~~~ 121 (237)
.+||-.|+|. |..+..+++. |...++++|.+++-++.+++.-. ..++...-.+... -....+|+|+...
T Consensus 162 ~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa----~~~i~~~~~~~~~~~~~~~~~~g~d~v~d~~ 237 (346)
T 4a2c_A 162 KNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGA----MQTFNSSEMSAPQMQSVLRELRFNQLILETA 237 (346)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC----SEEEETTTSCHHHHHHHHGGGCSSEEEEECS
T ss_pred CEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCC----eEEEeCCCCCHHHHHHhhcccCCcccccccc
Confidence 4899999876 5566666665 44477899999999998887632 1222211111110 1235688887642
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
. ....++.+.++|+++|.+++.-.
T Consensus 238 G-------------~~~~~~~~~~~l~~~G~~v~~g~ 261 (346)
T 4a2c_A 238 G-------------VPQTVELAVEIAGPHAQLALVGT 261 (346)
T ss_dssp C-------------SHHHHHHHHHHCCTTCEEEECCC
T ss_pred c-------------ccchhhhhhheecCCeEEEEEec
Confidence 2 13457778899999999987543
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.32 Score=40.11 Aligned_cols=89 Identities=12% Similarity=0.093 Sum_probs=58.5
Q ss_pred CcEEEEcc--CCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc--c----ccc-cCCCccEEEe
Q 026558 49 QRILIVGC--GNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ--M----DEF-QTGSFDSVVD 119 (237)
Q Consensus 49 ~~iLdlG~--G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~--~----~~~-~~~~fD~I~~ 119 (237)
.+||-.|+ |.|.....+++....++++++.+++.++.+++.-. . .++ |..+ . ... ....+|+|+.
T Consensus 168 ~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga---~-~~~--d~~~~~~~~~~~~~~~~~~~d~vi~ 241 (343)
T 2eih_A 168 DDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGA---D-ETV--NYTHPDWPKEVRRLTGGKGADKVVD 241 (343)
T ss_dssp CEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTC---S-EEE--ETTSTTHHHHHHHHTTTTCEEEEEE
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCC---C-EEE--cCCcccHHHHHHHHhCCCCceEEEE
Confidence 38999998 44677777766543499999999999988875421 1 122 2221 1 101 1347999987
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
... . ..++.+.+.|+++|+++...
T Consensus 242 ~~g-~-------------~~~~~~~~~l~~~G~~v~~g 265 (343)
T 2eih_A 242 HTG-A-------------LYFEGVIKATANGGRIAIAG 265 (343)
T ss_dssp SSC-S-------------SSHHHHHHHEEEEEEEEESS
T ss_pred CCC-H-------------HHHHHHHHhhccCCEEEEEe
Confidence 543 1 13677889999999987754
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.17 Score=41.85 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=58.1
Q ss_pred CcEEEEc-cCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc--ccc-ccccccCCCccEEEecccc
Q 026558 49 QRILIVG-CGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM--DVR-QMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG-~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~--d~~-~~~~~~~~~fD~I~~~~~l 123 (237)
.+||-.| +|. |..+..+++....++++++.+++.++.+++.-. ..++.. |.. .+.......+|+|+....
T Consensus 152 ~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa----~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~g- 226 (346)
T 3fbg_A 152 KTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGA----DIVLNHKESLLNQFKTQGIELVDYVFCTFN- 226 (346)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTC----SEEECTTSCHHHHHHHHTCCCEEEEEESSC-
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC----cEEEECCccHHHHHHHhCCCCccEEEECCC-
Confidence 3899884 444 666666666544599999999999999887531 112111 111 111122457999987421
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
....++.+.++|+++|+++..
T Consensus 227 ------------~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 227 ------------TDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp ------------HHHHHHHHHHHEEEEEEEEES
T ss_pred ------------chHHHHHHHHHhccCCEEEEE
Confidence 134577889999999999764
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.17 Score=41.88 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=58.7
Q ss_pred CcEEEEcc-C-CchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc----cc-cCCCccEEEecc
Q 026558 49 QRILIVGC-G-NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----EF-QTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~-G-~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~----~~-~~~~fD~I~~~~ 121 (237)
.+||-.|+ | .|..+..+++....++++++.+++.++.+++.-. ..++..+ .++. .. ....+|+|+...
T Consensus 161 ~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga----~~v~~~~-~~~~~~v~~~~~~~g~Dvvid~~ 235 (342)
T 4eye_A 161 ETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGA----DIVLPLE-EGWAKAVREATGGAGVDMVVDPI 235 (342)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC----SEEEESS-TTHHHHHHHHTTTSCEEEEEESC
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC----cEEecCc-hhHHHHHHHHhCCCCceEEEECC
Confidence 48999997 3 3667777776544599999999998888887531 1222222 2211 11 234799998753
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.- ..+..+.++|+++|++++..
T Consensus 236 g~--------------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 236 GG--------------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp C----------------CHHHHHHTEEEEEEEEEC-
T ss_pred ch--------------hHHHHHHHhhcCCCEEEEEE
Confidence 21 14677889999999998764
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.87 E-value=1.1 Score=31.40 Aligned_cols=91 Identities=14% Similarity=0.198 Sum_probs=56.0
Q ss_pred cEEEEccCC-ch-hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc---ccCCCccEEEeccccc
Q 026558 50 RILIVGCGN-SA-FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGTLD 124 (237)
Q Consensus 50 ~iLdlG~G~-G~-~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~I~~~~~l~ 124 (237)
+|+-+|+|. |. +...+.+.+. +++++|.+++.++.+++. .+.++.+|..+... ..-..+|+|+....
T Consensus 8 ~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~-----~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~-- 79 (141)
T 3llv_A 8 EYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDE-----GFDAVIADPTDESFYRSLDLEGVSAVLITGS-- 79 (141)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHT-----TCEEEECCTTCHHHHHHSCCTTCSEEEECCS--
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHC-----CCcEEECCCCCHHHHHhCCcccCCEEEEecC--
Confidence 789999865 32 2233344565 999999999988887754 46788888876431 22357899887432
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
. ......+....+.+. ...++...
T Consensus 80 ~--------~~~n~~~~~~a~~~~-~~~iia~~ 103 (141)
T 3llv_A 80 D--------DEFNLKILKALRSVS-DVYAIVRV 103 (141)
T ss_dssp C--------HHHHHHHHHHHHHHC-CCCEEEEE
T ss_pred C--------HHHHHHHHHHHHHhC-CceEEEEE
Confidence 1 222333444455555 45555544
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=93.80 E-value=0.09 Score=43.55 Aligned_cols=92 Identities=18% Similarity=0.351 Sum_probs=57.8
Q ss_pred CcEEEEccCC--chhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc----cccccC-CCccEEEec
Q 026558 49 QRILIVGCGN--SAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ----MDEFQT-GSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~--G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~----~~~~~~-~~fD~I~~~ 120 (237)
.+||-.|+|. |..+..+++.. ..+++++|.+++.++.+++.-. . .++...-.+ ...... +.+|+|+..
T Consensus 172 ~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~---~-~~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 247 (347)
T 1jvb_A 172 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA---D-YVINASMQDPLAEIRRITESKGVDAVIDL 247 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC---S-EEEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred CEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC---C-EEecCCCccHHHHHHHHhcCCCceEEEEC
Confidence 3899999874 45555555542 3489999999999888875421 1 122111111 111122 579999875
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
..- ...++.+.++|+++|+++...
T Consensus 248 ~g~-------------~~~~~~~~~~l~~~G~iv~~g 271 (347)
T 1jvb_A 248 NNS-------------EKTLSVYPKALAKQGKYVMVG 271 (347)
T ss_dssp CCC-------------HHHHTTGGGGEEEEEEEEECC
T ss_pred CCC-------------HHHHHHHHHHHhcCCEEEEEC
Confidence 321 235777889999999988764
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=93.60 E-value=0.11 Score=47.23 Aligned_cols=103 Identities=10% Similarity=0.101 Sum_probs=63.1
Q ss_pred cEEEEccCCchhHHHHHHc------------C-CCeEEEEeC---CHHHHHHHHHH--------------cCC-------
Q 026558 50 RILIVGCGNSAFSEGMVDD------------G-YEDVVNVDI---SSVVIEAMMKK--------------YSN------- 92 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~------------~-~~~~~~vD~---s~~~~~~a~~~--------------~~~------- 92 (237)
+|+|+|-|+|.......+. . .-+++++|. +++.+..+-.. ...
T Consensus 69 ~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (676)
T 3ps9_A 69 VVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCHR 148 (676)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEEE
T ss_pred EEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCceE
Confidence 8999999999766554332 1 126899999 77766643321 111
Q ss_pred ------CCCcEEEEcccccc-cccc---CCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 93 ------RPQLKYIKMDVRQM-DEFQ---TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 93 ------~~~~~~~~~d~~~~-~~~~---~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
...+++..+|+.+. +.+. ...||+++.+..--.. ++.-=...++..+.++++|||.+...
T Consensus 149 ~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~----np~~w~~~~~~~l~~~~~~g~~~~t~ 218 (676)
T 3ps9_A 149 LLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAK----NPDMWTQNLFNAMARLARPGGTLATF 218 (676)
T ss_dssp EEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGG----CGGGSCHHHHHHHHHHEEEEEEEEES
T ss_pred EEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcC----ChhhhhHHHHHHHHHHhCCCCEEEec
Confidence 01234566777553 2221 4679999987532111 11112467899999999999987543
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=93.40 E-value=0.25 Score=40.67 Aligned_cols=90 Identities=10% Similarity=0.097 Sum_probs=58.2
Q ss_pred CcEEEEcc--CCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc---cc----cccCCCccEEEe
Q 026558 49 QRILIVGC--GNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ---MD----EFQTGSFDSVVD 119 (237)
Q Consensus 49 ~~iLdlG~--G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~---~~----~~~~~~fD~I~~ 119 (237)
.+||-.|+ |.|..+..+++....++++++.+++.++.+++.+.. . .++ |..+ +. ....+.+|+|+.
T Consensus 157 ~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~--~-~~~--d~~~~~~~~~~~~~~~~~~~d~vi~ 231 (345)
T 2j3h_A 157 ETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGF--D-DAF--NYKEESDLTAALKRCFPNGIDIYFE 231 (345)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCC--S-EEE--ETTSCSCSHHHHHHHCTTCEEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCC--c-eEE--ecCCHHHHHHHHHHHhCCCCcEEEE
Confidence 48999997 336666666654334999999999988888754421 1 122 2221 11 011256999987
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
... . ..++.+.++|+++|++++..
T Consensus 232 ~~g-----------~---~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 232 NVG-----------G---KMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp SSC-----------H---HHHHHHHTTEEEEEEEEECC
T ss_pred CCC-----------H---HHHHHHHHHHhcCCEEEEEc
Confidence 532 1 26788899999999988754
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=93.33 E-value=1.3 Score=34.79 Aligned_cols=107 Identities=13% Similarity=0.203 Sum_probs=65.1
Q ss_pred cEEEEccC--Cch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccc---------cCCC
Q 026558 50 RILIVGCG--NSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEF---------QTGS 113 (237)
Q Consensus 50 ~iLdlG~G--~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~---------~~~~ 113 (237)
+||-.|++ .|. +...+++.|. +++.++.++...+.+.+... +..++.++.+|+.+.... .-+.
T Consensus 9 ~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 87 (266)
T 3oig_A 9 NIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQVGV 87 (266)
T ss_dssp EEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHHSC
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 78888875 332 3455666776 89999988765555444432 223688999999875421 1247
Q ss_pred ccEEEecccccee-----ccCCCChHHHH-----------HHHHHHHHhcCCCcEEEEEE
Q 026558 114 FDSVVDKGTLDSL-----LCGSNSRQNAT-----------QMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 114 fD~I~~~~~l~~~-----~~~~~~~~~~~-----------~~l~~~~~~L~pgG~l~~~~ 157 (237)
.|+++.+..+... .....+.+... .+++.+...++++|.++...
T Consensus 88 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 147 (266)
T 3oig_A 88 IHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT 147 (266)
T ss_dssp CCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred eeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 8999987654320 00001223222 35667777888889888765
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=93.23 E-value=0.96 Score=36.34 Aligned_cols=107 Identities=16% Similarity=0.160 Sum_probs=64.6
Q ss_pred cEEEEccCCc-----hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCcc
Q 026558 50 RILIVGCGNS-----AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G-----~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD 115 (237)
+||-.|++.| .+...+++.|. +|+.++.++...+.+++......++.++.+|+.+.... .-+..|
T Consensus 33 ~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD 111 (293)
T 3grk_A 33 RGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKWGKLD 111 (293)
T ss_dssp EEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHTSCCS
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence 7888887632 23445566775 89999998765554444332224678899999875321 125799
Q ss_pred EEEecccccee-----ccCCCChHHH-----------HHHHHHHHHhcCCCcEEEEEE
Q 026558 116 SVVDKGTLDSL-----LCGSNSRQNA-----------TQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 116 ~I~~~~~l~~~-----~~~~~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+++.+..+... .....+.++. ..+++.+.+.++++|.++.++
T Consensus 112 ~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~is 169 (293)
T 3grk_A 112 FLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLT 169 (293)
T ss_dssp EEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred EEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence 99988654320 0001122222 235666777888889888765
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=93.18 E-value=1.1 Score=30.98 Aligned_cols=92 Identities=15% Similarity=0.150 Sum_probs=54.7
Q ss_pred cEEEEccCC-chh-HHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc---ccCCCccEEEeccccc
Q 026558 50 RILIVGCGN-SAF-SEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGTLD 124 (237)
Q Consensus 50 ~iLdlG~G~-G~~-~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~I~~~~~l~ 124 (237)
+|+-+|+|. |.. ...+.+.+. +++++|.+++.++.+++.. ++.++.+|..+... ..-..+|+|+..-.-
T Consensus 6 ~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~----~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~- 79 (140)
T 1lss_A 6 YIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEI----DALVINGDCTKIKTLEDAGIEDADMYIAVTGK- 79 (140)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC----SSEEEESCTTSHHHHHHTTTTTCSEEEECCSC-
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhc----CcEEEEcCCCCHHHHHHcCcccCCEEEEeeCC-
Confidence 788888755 322 223344555 8999999998887776553 45667777654321 113568999875321
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
......+..+.+.+.++ .+++..
T Consensus 80 ---------~~~~~~~~~~~~~~~~~-~ii~~~ 102 (140)
T 1lss_A 80 ---------EEVNLMSSLLAKSYGIN-KTIARI 102 (140)
T ss_dssp ---------HHHHHHHHHHHHHTTCC-CEEEEC
T ss_pred ---------chHHHHHHHHHHHcCCC-EEEEEe
Confidence 22334455566667775 444433
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=93.13 E-value=0.97 Score=37.10 Aligned_cols=96 Identities=15% Similarity=0.107 Sum_probs=57.5
Q ss_pred CcEEEEccCC-chhHHHHHH-cCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc-ccc-ccCCCccEEEeccccc
Q 026558 49 QRILIVGCGN-SAFSEGMVD-DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-MDE-FQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~-~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~~-~~~~~fD~I~~~~~l~ 124 (237)
.+||-+|+|. |.....+++ .+..+++++|.+++-++.+++.-.. .-+.....|..+ ... .....+|.++....
T Consensus 165 ~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~-~~i~~~~~~~~~~v~~~t~g~g~d~~~~~~~-- 241 (348)
T 4eez_A 165 DWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGAD-VTINSGDVNPVDEIKKITGGLGVQSAIVCAV-- 241 (348)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCS-EEEEC-CCCHHHHHHHHTTSSCEEEEEECCS--
T ss_pred CEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCe-EEEeCCCCCHHHHhhhhcCCCCceEEEEecc--
Confidence 4899999987 344445554 4456999999999988888766421 001111112111 111 12345677765422
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
....+....+.|+++|++++...
T Consensus 242 -----------~~~~~~~~~~~l~~~G~~v~~g~ 264 (348)
T 4eez_A 242 -----------ARIAFEQAVASLKPMGKMVAVAV 264 (348)
T ss_dssp -----------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred -----------CcchhheeheeecCCceEEEEec
Confidence 13457788899999999887543
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=93.12 E-value=0.91 Score=38.67 Aligned_cols=92 Identities=18% Similarity=0.203 Sum_probs=61.6
Q ss_pred cEEEEccCC-chhHH-HHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc---ccCCCccEEEeccccc
Q 026558 50 RILIVGCGN-SAFSE-GMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGTLD 124 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~-~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~I~~~~~l~ 124 (237)
+|+-+|+|. |.... .+.+.+. .++++|.+++.++.+++. ++.++.+|+.+... ..-...|+|++...
T Consensus 6 ~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~~-----g~~vi~GDat~~~~L~~agi~~A~~viv~~~-- 77 (413)
T 3l9w_A 6 RVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPDHIETLRKF-----GMKVFYGDATRMDLLESAGAAKAEVLINAID-- 77 (413)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHHT-----TCCCEESCTTCHHHHHHTTTTTCSEEEECCS--
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHhC-----CCeEEEcCCCCHHHHHhcCCCccCEEEECCC--
Confidence 788888765 33322 2333455 999999999999988754 46789999987532 22457898887421
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.......+....+.+.|+..++...
T Consensus 78 --------~~~~n~~i~~~ar~~~p~~~Iiara 102 (413)
T 3l9w_A 78 --------DPQTNLQLTEMVKEHFPHLQIIARA 102 (413)
T ss_dssp --------SHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred --------ChHHHHHHHHHHHHhCCCCeEEEEE
Confidence 1334445666777788887777644
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=93.07 E-value=0.28 Score=40.84 Aligned_cols=89 Identities=19% Similarity=0.272 Sum_probs=55.9
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCH---HHHHHHHHHcCCCCCcEEEEccccc-ccc-c--cCCCccEEEec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISS---VVIEAMMKKYSNRPQLKYIKMDVRQ-MDE-F--QTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~---~~~~~a~~~~~~~~~~~~~~~d~~~-~~~-~--~~~~fD~I~~~ 120 (237)
.+||-+|+|. |.....+++....++++++.++ +.++.+++.- ...+ | .+ +.. . ....+|+|+..
T Consensus 182 ~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~g-----a~~v--~-~~~~~~~~~~~~~~~d~vid~ 253 (366)
T 2cdc_A 182 RKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETK-----TNYY--N-SSNGYDKLKDSVGKFDVIIDA 253 (366)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHT-----CEEE--E-CTTCSHHHHHHHCCEEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhC-----Ccee--c-hHHHHHHHHHhCCCCCEEEEC
Confidence 3899999843 4555555554223999999998 7777777542 2222 3 22 110 1 12569999875
Q ss_pred cccceeccCCCChHHHHHHH-HHHHHhcCCCcEEEEEEc
Q 026558 121 GTLDSLLCGSNSRQNATQML-KEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l-~~~~~~L~pgG~l~~~~~ 158 (237)
.... ..+ +.+.+.|+++|++++...
T Consensus 254 ~g~~-------------~~~~~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 254 TGAD-------------VNILGNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp CCCC-------------THHHHHHGGGEEEEEEEEECSC
T ss_pred CCCh-------------HHHHHHHHHHHhcCCEEEEEec
Confidence 3311 135 788999999999887643
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.00 E-value=0.89 Score=36.40 Aligned_cols=105 Identities=16% Similarity=0.213 Sum_probs=68.1
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccEE
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDSV 117 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~I 117 (237)
.+|--|++.|. ....+++.|. +|+.+|.+++.++.+.+.+. .++.++.+|+.+.... .-++.|++
T Consensus 31 valVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiL 107 (273)
T 4fgs_A 31 IAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEIG--GGAVGIQADSANLAELDRLYEKVKAEAGRIDVL 107 (273)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC--TTCEEEECCTTCHHHHHHHHHHHHHHHSCEEEE
T ss_pred EEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcC--CCeEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 67777776652 3344566665 99999999999888877763 3677888999775321 13678999
Q ss_pred Eeccccceec-cCCCChHHHH-----------HHHHHHHHhcCCCcEEEEEE
Q 026558 118 VDKGTLDSLL-CGSNSRQNAT-----------QMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 118 ~~~~~l~~~~-~~~~~~~~~~-----------~~l~~~~~~L~pgG~l~~~~ 157 (237)
+.+....... ...-+.+++. .+.+.+.+.|+.+|.++...
T Consensus 108 VNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInis 159 (273)
T 4fgs_A 108 FVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTG 159 (273)
T ss_dssp EECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred EECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 9886543221 1112333333 25666777888888877654
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=92.94 E-value=0.61 Score=36.65 Aligned_cols=105 Identities=12% Similarity=0.304 Sum_probs=65.8
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccEE
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDSV 117 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~I 117 (237)
++|--|++.|. +...+++.|. +++.++.+++.++...+.+. .++.++.+|+.+.... .-+..|++
T Consensus 10 ~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l 86 (255)
T 4eso_A 10 KAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFG--PRVHALRSDIADLNEIAVLGAAAGQTLGAIDLL 86 (255)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG--GGEEEEECCTTCHHHHHHHHHHHHHHHSSEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC--CcceEEEccCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 78888865542 3334555665 99999999988887776652 3678899999875421 12478999
Q ss_pred Eeccccceec-cCCCChHHHH-----------HHHHHHHHhcCCCcEEEEEE
Q 026558 118 VDKGTLDSLL-CGSNSRQNAT-----------QMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 118 ~~~~~l~~~~-~~~~~~~~~~-----------~~l~~~~~~L~pgG~l~~~~ 157 (237)
+.+....... ....+.++.. .+++.+...++++|.++...
T Consensus 87 v~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 138 (255)
T 4eso_A 87 HINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS 138 (255)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 9876543210 0001223222 24556667777788887764
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=92.94 E-value=0.48 Score=39.40 Aligned_cols=91 Identities=14% Similarity=0.152 Sum_probs=58.9
Q ss_pred CcEEEEc-c-CCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc----cccCCCccEEEeccc
Q 026558 49 QRILIVG-C-GNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----EFQTGSFDSVVDKGT 122 (237)
Q Consensus 49 ~~iLdlG-~-G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~----~~~~~~fD~I~~~~~ 122 (237)
.+||-.| + |.|..+..+++....++++++.+++.++.+++.-. ..++..+-.++. ......+|+|+....
T Consensus 165 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga----~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g 240 (362)
T 2c0c_A 165 KKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGC----DRPINYKTEPVGTVLKQEYPEGVDVVYESVG 240 (362)
T ss_dssp CEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC----SEEEETTTSCHHHHHHHHCTTCEEEEEECSC
T ss_pred CEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCC----cEEEecCChhHHHHHHHhcCCCCCEEEECCC
Confidence 3899999 3 44777777776544499999999998888876321 122221111111 112356999987532
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...++.+.++|+++|++++..
T Consensus 241 --------------~~~~~~~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 241 --------------GAMFDLAVDALATKGRLIVIG 261 (362)
T ss_dssp --------------THHHHHHHHHEEEEEEEEECC
T ss_pred --------------HHHHHHHHHHHhcCCEEEEEe
Confidence 136778899999999988764
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.88 E-value=0.44 Score=39.47 Aligned_cols=89 Identities=10% Similarity=0.133 Sum_probs=56.2
Q ss_pred CcEEEEccC--CchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc------c-ccCCCccEEEe
Q 026558 49 QRILIVGCG--NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD------E-FQTGSFDSVVD 119 (237)
Q Consensus 49 ~~iLdlG~G--~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~------~-~~~~~fD~I~~ 119 (237)
.+||-.|++ .|.....+++....++++++.+++.++.+++.-. . .++ |..+.. . .....+|+|+.
T Consensus 172 ~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga---~-~~~--d~~~~~~~~~~~~~~~~~~~D~vi~ 245 (351)
T 1yb5_A 172 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGA---H-EVF--NHREVNYIDKIKKYVGEKGIDIIIE 245 (351)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC---S-EEE--ETTSTTHHHHHHHHHCTTCEEEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCC---C-EEE--eCCCchHHHHHHHHcCCCCcEEEEE
Confidence 389999972 3555555555433499999999998887765421 1 122 222111 0 12347999987
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
... ...+..+.++|+++|++++..
T Consensus 246 ~~G--------------~~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 246 MLA--------------NVNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp SCH--------------HHHHHHHHHHEEEEEEEEECC
T ss_pred CCC--------------hHHHHHHHHhccCCCEEEEEe
Confidence 532 124677889999999988764
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.88 E-value=0.21 Score=41.27 Aligned_cols=91 Identities=14% Similarity=0.163 Sum_probs=57.9
Q ss_pred CcEEEEccC--CchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccc---ccc----cccCCCccEEEe
Q 026558 49 QRILIVGCG--NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVR---QMD----EFQTGSFDSVVD 119 (237)
Q Consensus 49 ~~iLdlG~G--~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~---~~~----~~~~~~fD~I~~ 119 (237)
.+||..|++ .|..+..++.....++++++.+++.++.+++.-. . .++ |.. ++. ....+.+|+|+.
T Consensus 171 ~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~---~-~~~--d~~~~~~~~~~~~~~~~~~~D~vi~ 244 (347)
T 2hcy_A 171 HWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGG---E-VFI--DFTKEKDIVGAVLKATDGGAHGVIN 244 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTC---C-EEE--ETTTCSCHHHHHHHHHTSCEEEEEE
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCC---c-eEE--ecCccHhHHHHHHHHhCCCCCEEEE
Confidence 489999983 3566666655433499999999888887765311 1 122 332 111 011237999987
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.... ...++.+.+.|+++|+++....
T Consensus 245 ~~g~-------------~~~~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 245 VSVS-------------EAAIEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp CSSC-------------HHHHHHHTTSEEEEEEEEECCC
T ss_pred CCCc-------------HHHHHHHHHHHhcCCEEEEEeC
Confidence 5321 2467888999999999887643
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=92.84 E-value=0.92 Score=44.32 Aligned_cols=74 Identities=18% Similarity=0.241 Sum_probs=57.4
Q ss_pred cEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc--------------ccc-CCC
Q 026558 50 RILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD--------------EFQ-TGS 113 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~--------------~~~-~~~ 113 (237)
++|||-||.|.++.-+.+.|. ..+.++|+++.+++.-+.++ ++..++..|+.++. .++ .+.
T Consensus 853 ~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~---p~~~~~~~DI~~l~~~~~~gdi~~~~~~~lp~~~~ 929 (1330)
T 3av4_A 853 RTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNN---PGTTVFTEDCNVLLKLVMAGEVTNSLGQRLPQKGD 929 (1330)
T ss_dssp EEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHC---TTSEEECSCHHHHHHHHTTTCSBCSSCCBCCCTTT
T ss_pred eEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC---CCCcEeeccHHHHhHhhhccchhhhhhhhccccCc
Confidence 799999999999999988885 46889999999999999887 44556666654221 011 246
Q ss_pred ccEEEecccccee
Q 026558 114 FDSVVDKGTLDSL 126 (237)
Q Consensus 114 fD~I~~~~~l~~~ 126 (237)
+|+|+...+.+.+
T Consensus 930 vDvl~GGpPCQ~F 942 (1330)
T 3av4_A 930 VEMLCGGPPCQGF 942 (1330)
T ss_dssp CSEEEECCCCTTT
T ss_pred cceEEecCCCccc
Confidence 8999998887765
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.69 E-value=1.7 Score=34.40 Aligned_cols=106 Identities=18% Similarity=0.210 Sum_probs=64.7
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCC------------HHHHHHHHHHcC-CCCCcEEEEccccccccc----
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDIS------------SVVIEAMMKKYS-NRPQLKYIKMDVRQMDEF---- 109 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s------------~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~---- 109 (237)
+||--|++.|. +...+++.|. +++.+|.+ ...++.+...+. ...++.++.+|+.+....
T Consensus 12 ~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 90 (287)
T 3pxx_A 12 VVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVSREL 90 (287)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHH
Confidence 78888865542 3344555665 89999987 666655554442 235788899999875421
Q ss_pred -----cCCCccEEEeccccceeccCCCChHHHH-----------HHHHHHHHhcCCCcEEEEEE
Q 026558 110 -----QTGSFDSVVDKGTLDSLLCGSNSRQNAT-----------QMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 110 -----~~~~fD~I~~~~~l~~~~~~~~~~~~~~-----------~~l~~~~~~L~pgG~l~~~~ 157 (237)
.-+..|+++.+..+.... ...+.+... .+++.+...++.+|.++...
T Consensus 91 ~~~~~~~g~id~lv~nAg~~~~~-~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 153 (287)
T 3pxx_A 91 ANAVAEFGKLDVVVANAGICPLG-AHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG 153 (287)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCC-TTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred HHHHHHcCCCCEEEECCCcCccc-CcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence 124799999986543321 001223222 35566777788888887754
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.67 E-value=0.34 Score=40.13 Aligned_cols=91 Identities=13% Similarity=0.058 Sum_probs=57.8
Q ss_pred CcEEEEcc-C-CchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc----cccCCCccEEEeccc
Q 026558 49 QRILIVGC-G-NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----EFQTGSFDSVVDKGT 122 (237)
Q Consensus 49 ~~iLdlG~-G-~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~----~~~~~~fD~I~~~~~ 122 (237)
.+||-.|+ | .|..+..+++....++++++.+++.++.+++.-. ..++..+-.+.. ......+|+|+....
T Consensus 169 ~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa----~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g 244 (353)
T 4dup_A 169 ESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGA----KRGINYRSEDFAAVIKAETGQGVDIILDMIG 244 (353)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTC----SEEEETTTSCHHHHHHHHHSSCEEEEEESCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC----CEEEeCCchHHHHHHHHHhCCCceEEEECCC
Confidence 38998853 3 3666666666544599999999999998887531 122221111111 112457999987532
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
- ..+..+.+.|+++|++++..
T Consensus 245 ~--------------~~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 245 A--------------AYFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp G--------------GGHHHHHHTEEEEEEEEECC
T ss_pred H--------------HHHHHHHHHhccCCEEEEEE
Confidence 1 14677889999999988764
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=92.62 E-value=2.1 Score=34.04 Aligned_cols=105 Identities=16% Similarity=0.249 Sum_probs=64.6
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccEE
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDSV 117 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~I 117 (237)
++|-.|++.|. +...+++.|. +|+.+|.+++.++.+.+.+. .++.++.+|+.+.... .-+..|++
T Consensus 31 ~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l 107 (277)
T 3gvc_A 31 VAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKIG--CGAAACRVDVSDEQQIIAMVDACVAAFGGVDKL 107 (277)
T ss_dssp EEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHC--SSCEEEECCTTCHHHHHHHHHHHHHHHSSCCEE
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcC--CcceEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 77877865552 3344566666 99999999988887776662 4678899999875321 12478999
Q ss_pred Eeccccceec-cCCCChHHHHH-----------HHHHHHHhc--CCCcEEEEEE
Q 026558 118 VDKGTLDSLL-CGSNSRQNATQ-----------MLKEVWRVL--KDKGVYILVT 157 (237)
Q Consensus 118 ~~~~~l~~~~-~~~~~~~~~~~-----------~l~~~~~~L--~pgG~l~~~~ 157 (237)
+.+....... ....+.++... +++.+.+.+ +.+|.++...
T Consensus 108 vnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~is 161 (277)
T 3gvc_A 108 VANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLS 161 (277)
T ss_dssp EECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEc
Confidence 9886543221 11122333322 344555555 4567777654
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.60 E-value=0.96 Score=36.79 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=54.8
Q ss_pred CcEEEEc-cCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc-cccccCCCccEEEeccccce
Q 026558 49 QRILIVG-CGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-MDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG-~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+||-+| +|. |..+..+++....++++++ ++..++.+++.-. ..++..+-.+ +. ..-..+|+|+....
T Consensus 154 ~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~lGa----~~~i~~~~~~~~~-~~~~g~D~v~d~~g--- 224 (321)
T 3tqh_A 154 DVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKALGA----EQCINYHEEDFLL-AISTPVDAVIDLVG--- 224 (321)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHHHTC----SEEEETTTSCHHH-HCCSCEEEEEESSC---
T ss_pred CEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHHcCC----CEEEeCCCcchhh-hhccCCCEEEECCC---
Confidence 3899886 554 7777777776545899887 5555777766421 1222221112 21 11256899987421
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...+..+.++|+++|+++...
T Consensus 225 -----------~~~~~~~~~~l~~~G~iv~~g 245 (321)
T 3tqh_A 225 -----------GDVGIQSIDCLKETGCIVSVP 245 (321)
T ss_dssp -----------HHHHHHHGGGEEEEEEEEECC
T ss_pred -----------cHHHHHHHHhccCCCEEEEeC
Confidence 112377899999999998764
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=92.56 E-value=0.78 Score=37.91 Aligned_cols=102 Identities=15% Similarity=0.239 Sum_probs=68.4
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC-------------------------CCCCcEEEEc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS-------------------------NRPQLKYIKM 101 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~-------------------------~~~~~~~~~~ 101 (237)
..|+-||||.=.....+...+ ...++=+|. |+.++.=++.+. ...+..++.+
T Consensus 92 ~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~~ 170 (334)
T 3iei_A 92 CQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGA 170 (334)
T ss_dssp SEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEEC
T ss_pred CEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEcc
Confidence 489999999977766666542 236666666 655554333321 0246778889
Q ss_pred ccccccc---------ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 102 DVRQMDE---------FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 102 d~~~~~~---------~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
|+.+... +.....=++++-+++.++ +++....+|+.+.+...+ |.+++..
T Consensus 171 DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL-----~~~~~~~ll~~ia~~f~~-~~~i~yE 229 (334)
T 3iei_A 171 DLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYM-----TPEQSANLLKWAANSFER-AMFINYE 229 (334)
T ss_dssp CTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGS-----CHHHHHHHHHHHHHHCSS-EEEEEEE
T ss_pred ccccchhHHHHHHhcCCCCCCCEEEEEchhhhCC-----CHHHHHHHHHHHHHhCCC-ceEEEEe
Confidence 9876321 334455688888889888 888999999999987754 5554444
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=92.56 E-value=0.11 Score=42.91 Aligned_cols=92 Identities=9% Similarity=0.095 Sum_probs=58.1
Q ss_pred CcEEEEccCC-chhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc----cccCCCccEEEeccc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----EFQTGSFDSVVDKGT 122 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~----~~~~~~fD~I~~~~~ 122 (237)
.+||-+|+|. |..+..+++.... ++++++.+++.++.+++. .. .++..+-.++. ......+|+|+....
T Consensus 166 ~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~----~v~~~~~~~~~~~~~~~~~~g~D~vid~~g 240 (343)
T 2dq4_A 166 KSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-AD----RLVNPLEEDLLEVVRRVTGSGVEVLLEFSG 240 (343)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CS----EEECTTTSCHHHHHHHHHSSCEEEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HH----hccCcCccCHHHHHHHhcCCCCCEEEECCC
Confidence 3899999854 6666677765444 899999999887776553 21 12111111111 011346999987432
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
- ...++.+.++|+++|+++....
T Consensus 241 ~-------------~~~~~~~~~~l~~~G~iv~~g~ 263 (343)
T 2dq4_A 241 N-------------EAAIHQGLMALIPGGEARILGI 263 (343)
T ss_dssp C-------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred C-------------HHHHHHHHHHHhcCCEEEEEec
Confidence 1 2357788999999999887643
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=92.44 E-value=2.1 Score=33.78 Aligned_cols=63 Identities=8% Similarity=0.087 Sum_probs=46.4
Q ss_pred cEEEEccCCchhHHHHHH----cCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEecccc
Q 026558 50 RILIVGCGNSAFSEGMVD----DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~----~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l 123 (237)
+||-.|+ |.++..+++ .++ +|++++.++........ .+++++.+|+.++. -..+|+|+.....
T Consensus 7 ~ilVtGa--G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-----~~~~~~~~D~~d~~---~~~~d~vi~~a~~ 73 (286)
T 3ius_A 7 TLLSFGH--GYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRA-----SGAEPLLWPGEEPS---LDGVTHLLISTAP 73 (286)
T ss_dssp EEEEETC--CHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHH-----TTEEEEESSSSCCC---CTTCCEEEECCCC
T ss_pred cEEEECC--cHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhh-----CCCeEEEecccccc---cCCCCEEEECCCc
Confidence 7999995 777666554 455 99999999876554443 36889999998864 4578999986553
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=92.31 E-value=0.66 Score=39.90 Aligned_cols=91 Identities=15% Similarity=0.162 Sum_probs=58.9
Q ss_pred CcEEEEcc-CC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc---cc------------------cc
Q 026558 49 QRILIVGC-GN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DV------------------RQ 105 (237)
Q Consensus 49 ~~iLdlG~-G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~---d~------------------~~ 105 (237)
.+||-+|+ |. |..+..+++....++++++.+++-++.+++.-.. .++.. |. ..
T Consensus 230 ~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa~----~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~ 305 (456)
T 3krt_A 230 DNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAE----AIIDRNAEGYRFWKDENTQDPKEWKRFGKR 305 (456)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCC----EEEETTTTTCCSEEETTEECHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCc----EEEecCcCcccccccccccchHHHHHHHHH
Confidence 38999997 43 6777777776545899999999999998765311 11111 10 00
Q ss_pred ccc-ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 106 MDE-FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 106 ~~~-~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+.. .....+|+|+.... ...+..+.++|+++|++++.-
T Consensus 306 i~~~t~g~g~Dvvid~~G--------------~~~~~~~~~~l~~~G~iv~~G 344 (456)
T 3krt_A 306 IRELTGGEDIDIVFEHPG--------------RETFGASVFVTRKGGTITTCA 344 (456)
T ss_dssp HHHHHTSCCEEEEEECSC--------------HHHHHHHHHHEEEEEEEEESC
T ss_pred HHHHhCCCCCcEEEEcCC--------------chhHHHHHHHhhCCcEEEEEe
Confidence 100 12357999987421 146778889999999998754
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=92.31 E-value=1 Score=33.95 Aligned_cols=95 Identities=15% Similarity=0.202 Sum_probs=56.9
Q ss_pred cEEEEccCCchhHHHHH----HcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 50 RILIVGCGNSAFSEGMV----DDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~----~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
+||-.| |+|.++..++ +.++ +|++++.++..+.... +++.++.+|+.+...-.-..+|+|+.......
T Consensus 2 kvlVtG-atG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~------~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~ 73 (221)
T 3ew7_A 2 KIGIIG-ATGRAGSRILEEAKNRGH-EVTAIVRNAGKITQTH------KDINILQKDIFDLTLSDLSDQNVVVDAYGISP 73 (221)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTC-EEEEEESCSHHHHHHC------SSSEEEECCGGGCCHHHHTTCSEEEECCCSST
T ss_pred eEEEEc-CCchhHHHHHHHHHhCCC-EEEEEEcCchhhhhcc------CCCeEEeccccChhhhhhcCCCEEEECCcCCc
Confidence 577777 4666555544 4565 9999999986655432 46899999998764211246899998754421
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCC--cEEEEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDK--GVYILVT 157 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pg--G~l~~~~ 157 (237)
. ..........++.+.++.. +.+++.+
T Consensus 74 ~-----~~~~~~~~~~~l~~a~~~~~~~~~v~~S 102 (221)
T 3ew7_A 74 D-----EAEKHVTSLDHLISVLNGTVSPRLLVVG 102 (221)
T ss_dssp T-----TTTSHHHHHHHHHHHHCSCCSSEEEEEC
T ss_pred c-----ccchHHHHHHHHHHHHHhcCCceEEEEe
Confidence 1 1122334445555555543 5666543
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=92.21 E-value=0.91 Score=36.52 Aligned_cols=107 Identities=16% Similarity=0.161 Sum_probs=64.0
Q ss_pred cEEEEccCC--ch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCcc
Q 026558 50 RILIVGCGN--SA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~--G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD 115 (237)
++|-.|++. |. +...+++.|. +|+.++.++...+.+.+.......+.++.+|+.+.... .-+..|
T Consensus 32 ~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD 110 (296)
T 3k31_A 32 KGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWGSLD 110 (296)
T ss_dssp EEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHSCCS
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 788888753 32 3445566675 89999999765444443332223568899999875321 115799
Q ss_pred EEEecccccee-----ccCCCChHHHH-----------HHHHHHHHhcCCCcEEEEEE
Q 026558 116 SVVDKGTLDSL-----LCGSNSRQNAT-----------QMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 116 ~I~~~~~l~~~-----~~~~~~~~~~~-----------~~l~~~~~~L~pgG~l~~~~ 157 (237)
+++.+..+... .....+.++.. .+++.+...++.+|.++.++
T Consensus 111 ~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~is 168 (296)
T 3k31_A 111 FVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLS 168 (296)
T ss_dssp EEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred EEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEE
Confidence 99988654321 00011222222 35566677778888888765
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=92.19 E-value=0.94 Score=36.23 Aligned_cols=94 Identities=16% Similarity=0.285 Sum_probs=60.0
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-----------C---------CCcEEEEccccccc
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-----------R---------PQLKYIKMDVRQMD 107 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-----------~---------~~~~~~~~d~~~~~ 107 (237)
+|.-||+|. | .++..++..|+ +|+++|.+++.++.+++.+.. . .++.+ ..|..+.
T Consensus 6 kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~~~- 82 (283)
T 4e12_A 6 NVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLAQA- 82 (283)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHHHH-
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHHHH-
Confidence 688888877 3 34445566676 999999999998888765210 0 01121 2222221
Q ss_pred cccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 108 EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 108 ~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
-...|+|+..-+ . ..+....+++++...++|+.+++-.+
T Consensus 83 ---~~~aDlVi~av~-~-------~~~~~~~v~~~l~~~~~~~~il~s~t 121 (283)
T 4e12_A 83 ---VKDADLVIEAVP-E-------SLDLKRDIYTKLGELAPAKTIFATNS 121 (283)
T ss_dssp ---TTTCSEEEECCC-S-------CHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred ---hccCCEEEEecc-C-------cHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 245799987532 1 22567788999999999988775444
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=92.16 E-value=0.28 Score=42.12 Aligned_cols=92 Identities=17% Similarity=0.130 Sum_probs=58.0
Q ss_pred CcEEEEcc-CC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEE--ccc-------------------cc
Q 026558 49 QRILIVGC-GN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK--MDV-------------------RQ 105 (237)
Q Consensus 49 ~~iLdlG~-G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~--~d~-------------------~~ 105 (237)
.+||-.|+ |. |..+..+++....++++++.+++.++.+++.-. ...+.. .|. ..
T Consensus 222 ~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (447)
T 4a0s_A 222 DIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGC---DLVINRAELGITDDIADDPRRVVETGRKLAKL 298 (447)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC---CCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC---CEEEecccccccccccccccccchhhhHHHHH
Confidence 38999997 33 666667776654599999999999998865421 111111 111 00
Q ss_pred cccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 106 MDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 106 ~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+.......+|+|+.... . ..++.+.++|+++|++++..
T Consensus 299 v~~~~g~g~Dvvid~~G-----------~---~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 299 VVEKAGREPDIVFEHTG-----------R---VTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHSSCCSEEEECSC-----------H---HHHHHHHHHSCTTCEEEESC
T ss_pred HHHHhCCCceEEEECCC-----------c---hHHHHHHHHHhcCCEEEEEe
Confidence 10011357999987432 1 25678889999999998754
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=92.16 E-value=0.6 Score=38.49 Aligned_cols=88 Identities=18% Similarity=0.148 Sum_probs=57.4
Q ss_pred CcEEEEcc-CC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc-----ccCCCccEEEecc
Q 026558 49 QRILIVGC-GN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE-----FQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~-G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~-----~~~~~fD~I~~~~ 121 (237)
.+||-+|+ |. |..+..+++....+++++ .+++.++.+++.- ...+. +..+... .....+|+|+...
T Consensus 152 ~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lG-----a~~i~-~~~~~~~~~~~~~~~~g~D~vid~~ 224 (343)
T 3gaz_A 152 QTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLG-----ATPID-ASREPEDYAAEHTAGQGFDLVYDTL 224 (343)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHT-----SEEEE-TTSCHHHHHHHHHTTSCEEEEEESS
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcC-----CCEec-cCCCHHHHHHHHhcCCCceEEEECC
Confidence 48999994 33 677777776644599999 8898888887652 22222 2222110 1235799998742
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
. ...+..+.++|+++|+++...
T Consensus 225 g--------------~~~~~~~~~~l~~~G~iv~~g 246 (343)
T 3gaz_A 225 G--------------GPVLDASFSAVKRFGHVVSCL 246 (343)
T ss_dssp C--------------THHHHHHHHHEEEEEEEEESC
T ss_pred C--------------cHHHHHHHHHHhcCCeEEEEc
Confidence 2 135778889999999988754
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.14 E-value=0.12 Score=42.31 Aligned_cols=90 Identities=13% Similarity=0.140 Sum_probs=55.9
Q ss_pred cEEEEcc-C-CchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEE-ccc-cc-cccccCCCccEEEeccccc
Q 026558 50 RILIVGC-G-NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK-MDV-RQ-MDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 50 ~iLdlG~-G-~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~-~d~-~~-~~~~~~~~fD~I~~~~~l~ 124 (237)
+||-.|+ | .|..+..+++....++++++.+++.++.+++.-. . .++. .+. .+ ........+|+|+....-
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa--~--~~i~~~~~~~~~~~~~~~~~~d~vid~~g~- 226 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGA--K--EVLAREDVMAERIRPLDKQRWAAAVDPVGG- 226 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTC--S--EEEECC---------CCSCCEEEEEECSTT-
T ss_pred eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCC--c--EEEecCCcHHHHHHHhcCCcccEEEECCcH-
Confidence 7999997 3 3677777776544589999999888888876321 1 1111 111 01 111223468998864221
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
..+..+.++|+++|++++.-
T Consensus 227 -------------~~~~~~~~~l~~~G~~v~~G 246 (328)
T 1xa0_A 227 -------------RTLATVLSRMRYGGAVAVSG 246 (328)
T ss_dssp -------------TTHHHHHHTEEEEEEEEECS
T ss_pred -------------HHHHHHHHhhccCCEEEEEe
Confidence 14677889999999988754
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=92.12 E-value=0.13 Score=42.41 Aligned_cols=64 Identities=16% Similarity=0.112 Sum_probs=43.9
Q ss_pred CcEEE-Ecccccc-ccccCCCccEEEeccccceeccC---CCC-hHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 95 QLKYI-KMDVRQM-DEFQTGSFDSVVDKGTLDSLLCG---SNS-RQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 95 ~~~~~-~~d~~~~-~~~~~~~fD~I~~~~~l~~~~~~---~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
...++ ++|+.+. ..++++++|+|+++.+...-... ... .......+.++.++|+|||.+++...
T Consensus 38 ~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~ 107 (319)
T 1eg2_A 38 TRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG 107 (319)
T ss_dssp EEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 35677 8999763 23567799999999876431000 001 13566788899999999999988764
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.10 E-value=0.49 Score=38.64 Aligned_cols=89 Identities=12% Similarity=0.112 Sum_probs=55.7
Q ss_pred CcEEEEcc--CCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc------c-ccCCCccEEEe
Q 026558 49 QRILIVGC--GNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD------E-FQTGSFDSVVD 119 (237)
Q Consensus 49 ~~iLdlG~--G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~------~-~~~~~fD~I~~ 119 (237)
.+||-.|+ |.|.....++.....++++++.+++.++.+++.-. . .++ |..+.. . .....+|+++.
T Consensus 142 ~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~---~-~~~--~~~~~~~~~~~~~~~~~~~~D~vi~ 215 (327)
T 1qor_A 142 EQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA---W-QVI--NYREEDLVERLKEITGGKKVRVVYD 215 (327)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC---S-EEE--ETTTSCHHHHHHHHTTTCCEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC---C-EEE--ECCCccHHHHHHHHhCCCCceEEEE
Confidence 38999984 33555555554322499999999998888876421 1 122 222111 0 12346999987
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+.. ...++.+.++|+++|+++...
T Consensus 216 ~~g--------------~~~~~~~~~~l~~~G~iv~~g 239 (327)
T 1qor_A 216 SVG--------------RDTWERSLDCLQRRGLMVSFG 239 (327)
T ss_dssp CSC--------------GGGHHHHHHTEEEEEEEEECC
T ss_pred CCc--------------hHHHHHHHHHhcCCCEEEEEe
Confidence 543 124677889999999988764
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=91.99 E-value=1.2 Score=38.42 Aligned_cols=94 Identities=17% Similarity=0.269 Sum_probs=60.5
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-------------C----CCCcEEEEcccccccccc
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-------------N----RPQLKYIKMDVRQMDEFQ 110 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-------------~----~~~~~~~~~d~~~~~~~~ 110 (237)
+|.-||+|. | .++..++..|+ .|+++|.+++.++.+++.+. . ....++ ..|...
T Consensus 39 kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~----- 111 (463)
T 1zcj_A 39 SVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKE----- 111 (463)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGGG-----
T ss_pred EEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHHH-----
Confidence 799999988 4 34455666676 99999999998887765321 0 001122 333311
Q ss_pred CCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 111 ~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
-...|+|+..-+ .. ......+++++...++|+.+++..+.
T Consensus 112 ~~~aDlVIeaVp-e~-------~~~k~~v~~~l~~~~~~~~ii~snTs 151 (463)
T 1zcj_A 112 LSTVDLVVEAVF-ED-------MNLKKKVFAELSALCKPGAFLCTNTS 151 (463)
T ss_dssp GTTCSEEEECCC-SC-------HHHHHHHHHHHHHHSCTTCEEEECCS
T ss_pred HCCCCEEEEcCC-CC-------HHHHHHHHHHHHhhCCCCeEEEeCCC
Confidence 245799988532 22 24567788999999999887765443
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.71 E-value=0.99 Score=35.40 Aligned_cols=108 Identities=15% Similarity=0.175 Sum_probs=63.5
Q ss_pred CcEEEEccC-CchhHH----HHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCc
Q 026558 49 QRILIVGCG-NSAFSE----GMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSF 114 (237)
Q Consensus 49 ~~iLdlG~G-~G~~~~----~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~f 114 (237)
++||-.|++ +|.++. .+++.|. +++.++.++...+.+++.....+.+.++.+|+.+.... .-+..
T Consensus 15 k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 93 (271)
T 3ek2_A 15 KRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTHWDSL 93 (271)
T ss_dssp CEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHCSCE
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 388888874 244444 4455665 89999988655444444332224578899999875421 12578
Q ss_pred cEEEecccccee------ccCCCChHHHH-----------HHHHHHHHhcCCCcEEEEEE
Q 026558 115 DSVVDKGTLDSL------LCGSNSRQNAT-----------QMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 115 D~I~~~~~l~~~------~~~~~~~~~~~-----------~~l~~~~~~L~pgG~l~~~~ 157 (237)
|+++.+..+... +....+.++.. .+++.+.+.++++|.++...
T Consensus 94 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 153 (271)
T 3ek2_A 94 DGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS 153 (271)
T ss_dssp EEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence 999987654321 00001223322 34556666777788877765
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=91.68 E-value=1.1 Score=36.92 Aligned_cols=90 Identities=11% Similarity=0.069 Sum_probs=57.2
Q ss_pred CcEEEEccC--CchhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc--c----ccccCCCccEEEe
Q 026558 49 QRILIVGCG--NSAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ--M----DEFQTGSFDSVVD 119 (237)
Q Consensus 49 ~~iLdlG~G--~G~~~~~~~~~~~~-~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~--~----~~~~~~~fD~I~~ 119 (237)
.+||-.|++ .|.....++..... ++++++.+++.++.+++.+.. . .++ |..+ . .....+.+|+++.
T Consensus 162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~--~-~~~--d~~~~~~~~~~~~~~~~~~d~vi~ 236 (357)
T 2zb4_A 162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGF--D-AAI--NYKKDNVAEQLRESCPAGVDVYFD 236 (357)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCC--S-EEE--ETTTSCHHHHHHHHCTTCEEEEEE
T ss_pred cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC--c-eEE--ecCchHHHHHHHHhcCCCCCEEEE
Confidence 389999973 25555555554444 899999999888888764421 1 122 2221 1 1111236899987
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+.. ...++.+.++|+++|++++..
T Consensus 237 ~~G--------------~~~~~~~~~~l~~~G~iv~~G 260 (357)
T 2zb4_A 237 NVG--------------GNISDTVISQMNENSHIILCG 260 (357)
T ss_dssp SCC--------------HHHHHHHHHTEEEEEEEEECC
T ss_pred CCC--------------HHHHHHHHHHhccCcEEEEEC
Confidence 532 146788899999999988754
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=91.65 E-value=0.12 Score=41.11 Aligned_cols=62 Identities=15% Similarity=0.137 Sum_probs=41.8
Q ss_pred cEEEEcccccc-ccccCCCccEEEeccccceeccCCC---Ch----HHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 96 LKYIKMDVRQM-DEFQTGSFDSVVDKGTLDSLLCGSN---SR----QNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 96 ~~~~~~d~~~~-~~~~~~~fD~I~~~~~l~~~~~~~~---~~----~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+++++|+.+. ..+++++||+|+++.+...-..+.. +. ......++++.++|+|+|.+++..
T Consensus 5 ~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~ 74 (260)
T 1g60_A 5 NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (260)
T ss_dssp SSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 46788888653 2245679999999987642200000 11 245678888999999999998874
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=91.54 E-value=0.56 Score=33.78 Aligned_cols=94 Identities=16% Similarity=0.135 Sum_probs=53.3
Q ss_pred CcEEEEccCC-chhHH-HHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---cCCCccEEEecccc
Q 026558 49 QRILIVGCGN-SAFSE-GMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---QTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~-~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---~~~~fD~I~~~~~l 123 (237)
.+|+-+|+|. |.... .+.+.+. +++++|.+++.++.++.. .+..++.+|..+...+ .-..+|+|+..-.-
T Consensus 20 ~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~----~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~ 94 (155)
T 2g1u_A 20 KYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNSE----FSGFTVVGDAAEFETLKECGMEKADMVFAFTND 94 (155)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCTT----CCSEEEESCTTSHHHHHTTTGGGCSEEEECSSC
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHhc----CCCcEEEecCCCHHHHHHcCcccCCEEEEEeCC
Confidence 3899998865 43332 3334455 999999998765543311 2455666776542211 12468999875321
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
......+..+.+.+.+...++...
T Consensus 95 ----------~~~~~~~~~~~~~~~~~~~iv~~~ 118 (155)
T 2g1u_A 95 ----------DSTNFFISMNARYMFNVENVIARV 118 (155)
T ss_dssp ----------HHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred ----------cHHHHHHHHHHHHHCCCCeEEEEE
Confidence 233444555556566666665554
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.52 E-value=1.3 Score=34.82 Aligned_cols=72 Identities=17% Similarity=0.254 Sum_probs=47.4
Q ss_pred cEEEEccCCchhHHH----HHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccc----c-----CCC
Q 026558 50 RILIVGCGNSAFSEG----MVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEF----Q-----TGS 113 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~----~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~----~-----~~~ 113 (237)
+||-.|++ |.++.. +++.|. +|++++.++...+.+.+.+.. ..++.++.+|+.+.... . -+.
T Consensus 9 ~vlVTGas-~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 86 (267)
T 2gdz_A 9 VALVTGAA-QGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGR 86 (267)
T ss_dssp EEEEETTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred EEEEECCC-CcHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 78888864 444444 455665 899999998777665555432 23578889999875321 1 146
Q ss_pred ccEEEecccc
Q 026558 114 FDSVVDKGTL 123 (237)
Q Consensus 114 fD~I~~~~~l 123 (237)
.|+++.+...
T Consensus 87 id~lv~~Ag~ 96 (267)
T 2gdz_A 87 LDILVNNAGV 96 (267)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 8999987654
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=91.33 E-value=0.88 Score=37.63 Aligned_cols=91 Identities=10% Similarity=-0.021 Sum_probs=55.6
Q ss_pred CcEEEEcc--CCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccc----cc-ccCCCccEEEecc
Q 026558 49 QRILIVGC--GNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM----DE-FQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~--G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~----~~-~~~~~fD~I~~~~ 121 (237)
.+||-.|+ |.|..+..++.....++++++.+++.++.+++.-. . .++..+-.+. .. .....+|+++...
T Consensus 164 ~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~---~-~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~ 239 (354)
T 2j8z_A 164 DYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGA---A-AGFNYKKEDFSEATLKFTKGAGVNLILDCI 239 (354)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTC---S-EEEETTTSCHHHHHHHHTTTSCEEEEEESS
T ss_pred CEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC---c-EEEecCChHHHHHHHHHhcCCCceEEEECC
Confidence 38999984 23555555555433499999999999888865421 1 1221111111 00 1234699998753
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.- ..+..+.++|+++|++++..
T Consensus 240 G~--------------~~~~~~~~~l~~~G~iv~~G 261 (354)
T 2j8z_A 240 GG--------------SYWEKNVNCLALDGRWVLYG 261 (354)
T ss_dssp CG--------------GGHHHHHHHEEEEEEEEECC
T ss_pred Cc--------------hHHHHHHHhccCCCEEEEEe
Confidence 21 13667789999999988764
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=91.21 E-value=0.27 Score=39.73 Aligned_cols=87 Identities=10% Similarity=0.072 Sum_probs=56.0
Q ss_pred CcEEEEcc-C-CchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc---cccccCCCccEEEecccc
Q 026558 49 QRILIVGC-G-NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ---MDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~-G-~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~---~~~~~~~~fD~I~~~~~l 123 (237)
.+||-.|+ | .|..+..+++....++++++.+++.++.+++.- -..++ |..+ .... -..+|+|+. ..-
T Consensus 127 ~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g----a~~~~--~~~~~~~~~~~-~~~~d~vid-~g~ 198 (302)
T 1iz0_A 127 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALG----AEEAA--TYAEVPERAKA-WGGLDLVLE-VRG 198 (302)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTT----CSEEE--EGGGHHHHHHH-TTSEEEEEE-CSC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcC----CCEEE--ECCcchhHHHH-hcCceEEEE-CCH
Confidence 49999997 3 366666666654349999999998888886531 11222 2222 1100 156899986 321
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
..++.+.++|+++|+++...
T Consensus 199 --------------~~~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 199 --------------KEVEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp --------------TTHHHHHTTEEEEEEEEEC-
T ss_pred --------------HHHHHHHHhhccCCEEEEEe
Confidence 14677889999999987754
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=91.21 E-value=1.1 Score=36.61 Aligned_cols=89 Identities=17% Similarity=0.100 Sum_probs=57.2
Q ss_pred CcEEEEcc--CCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc------c-ccCCCccEEEe
Q 026558 49 QRILIVGC--GNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD------E-FQTGSFDSVVD 119 (237)
Q Consensus 49 ~~iLdlG~--G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~------~-~~~~~fD~I~~ 119 (237)
.+||-.|+ |.|.....++.....++++++.+++.++.+++.-. . ..+ |..+.. . .....+|+++.
T Consensus 147 ~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~---~-~~~--d~~~~~~~~~i~~~~~~~~~d~vi~ 220 (333)
T 1wly_A 147 DYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGC---H-HTI--NYSTQDFAEVVREITGGKGVDVVYD 220 (333)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTC---S-EEE--ETTTSCHHHHHHHHHTTCCEEEEEE
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC---C-EEE--ECCCHHHHHHHHHHhCCCCCeEEEE
Confidence 38999985 44666666665433499999999988888876421 1 122 222111 0 11346999987
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...- ..++.+.++|+++|+++...
T Consensus 221 ~~g~--------------~~~~~~~~~l~~~G~iv~~g 244 (333)
T 1wly_A 221 SIGK--------------DTLQKSLDCLRPRGMCAAYG 244 (333)
T ss_dssp CSCT--------------TTHHHHHHTEEEEEEEEECC
T ss_pred CCcH--------------HHHHHHHHhhccCCEEEEEe
Confidence 5321 34778889999999987764
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.18 E-value=0.24 Score=41.50 Aligned_cols=99 Identities=9% Similarity=0.166 Sum_probs=54.4
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|+-+|+|. |......+.....+|+++|.++..++.+++.... .+.....+..++... -..+|+|+........
T Consensus 167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~--~~~~~~~~~~~l~~~-~~~~DvVi~~~g~~~~- 242 (369)
T 2eez_A 167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGG--RVITLTATEANIKKS-VQHADLLIGAVLVPGA- 242 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTT--SEEEEECCHHHHHHH-HHHCSEEEECCC-----
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCc--eEEEecCCHHHHHHH-HhCCCEEEECCCCCcc-
Confidence 4899999853 3333333333234999999999888877765421 222211122222111 1358999875432210
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
....-+.+++.+.|++||+++...
T Consensus 243 ------~~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 243 ------KAPKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp ---------CCSCHHHHTTSCTTCEEEECC
T ss_pred ------ccchhHHHHHHHhhcCCCEEEEEe
Confidence 111113567788899999887654
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=91.17 E-value=0.47 Score=38.80 Aligned_cols=90 Identities=16% Similarity=0.207 Sum_probs=56.7
Q ss_pred cEEEEcc-CC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc-cc-cc-cccccCCCccEEEeccccc
Q 026558 50 RILIVGC-GN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM-DV-RQ-MDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 50 ~iLdlG~-G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~-d~-~~-~~~~~~~~fD~I~~~~~l~ 124 (237)
+||-.|+ |. |.....+++....++++++.+++.++.+++.-. ..++.. +. .+ ........+|+|+....
T Consensus 153 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa----~~v~~~~~~~~~~~~~~~~~~~d~vid~~g-- 226 (330)
T 1tt7_A 153 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGA----SEVISREDVYDGTLKALSKQQWQGAVDPVG-- 226 (330)
T ss_dssp CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTC----SEEEEHHHHCSSCCCSSCCCCEEEEEESCC--
T ss_pred eEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC----cEEEECCCchHHHHHHhhcCCccEEEECCc--
Confidence 7999997 33 666666666533489999999888888876421 122211 11 01 11122346899886421
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
. ..+..+.++|+++|++++..
T Consensus 227 --------~----~~~~~~~~~l~~~G~iv~~G 247 (330)
T 1tt7_A 227 --------G----KQLASLLSKIQYGGSVAVSG 247 (330)
T ss_dssp --------T----HHHHHHHTTEEEEEEEEECC
T ss_pred --------H----HHHHHHHHhhcCCCEEEEEe
Confidence 1 25778899999999998764
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.13 E-value=2.5 Score=33.67 Aligned_cols=72 Identities=15% Similarity=0.230 Sum_probs=49.7
Q ss_pred cEEEEccCCchhHH----HHHHcCCCeEEEEeCCHHHHHHHHHHcCC--CCCcEEEEcccccc-cc---c------cCCC
Q 026558 50 RILIVGCGNSAFSE----GMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQM-DE---F------QTGS 113 (237)
Q Consensus 50 ~iLdlG~G~G~~~~----~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~-~~---~------~~~~ 113 (237)
+||-.|++.| ++. .+++.|. +|++++.++...+.+.+.+.. ..++.++.+|+.+. .. + .-+.
T Consensus 14 ~vlITGas~G-IG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~g~ 91 (311)
T 3o26_A 14 CAVVTGGNKG-IGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHFGK 91 (311)
T ss_dssp EEEESSCSSH-HHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHHSS
T ss_pred EEEEecCCch-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhCCC
Confidence 7777776544 444 4455665 999999998887776666532 24788999999876 31 1 1257
Q ss_pred ccEEEecccc
Q 026558 114 FDSVVDKGTL 123 (237)
Q Consensus 114 fD~I~~~~~l 123 (237)
.|+++.+..+
T Consensus 92 iD~lv~nAg~ 101 (311)
T 3o26_A 92 LDILVNNAGV 101 (311)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCcc
Confidence 9999998754
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=91.12 E-value=2.1 Score=32.54 Aligned_cols=90 Identities=16% Similarity=0.148 Sum_probs=58.3
Q ss_pred cEEEEccCCchhHHHHH----HcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc---ccCCCccEEEeccc
Q 026558 50 RILIVGCGNSAFSEGMV----DDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGT 122 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~----~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~I~~~~~ 122 (237)
+|+=+|+ |.++..++ +.+. .++.+|.+++.++...+.. ++.++.+|..+... ..-..+|+|++...
T Consensus 2 ~iiIiG~--G~~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~~----~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 74 (218)
T 3l4b_C 2 KVIIIGG--ETTAYYLARSMLSRKY-GVVIINKDRELCEEFAKKL----KATIIHGDGSHKEILRDAEVSKNDVVVILTP 74 (218)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHHS----SSEEEESCTTSHHHHHHHTCCTTCEEEECCS
T ss_pred EEEEECC--CHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHc----CCeEEEcCCCCHHHHHhcCcccCCEEEEecC
Confidence 4666776 55555444 4455 9999999999888766553 56789999876432 12357899987422
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
.......+..+.+.+.+...++..
T Consensus 75 ----------~d~~n~~~~~~a~~~~~~~~iia~ 98 (218)
T 3l4b_C 75 ----------RDEVNLFIAQLVMKDFGVKRVVSL 98 (218)
T ss_dssp ----------CHHHHHHHHHHHHHTSCCCEEEEC
T ss_pred ----------CcHHHHHHHHHHHHHcCCCeEEEE
Confidence 133445566666666666666653
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=91.09 E-value=1.6 Score=35.86 Aligned_cols=98 Identities=13% Similarity=0.193 Sum_probs=65.9
Q ss_pred CcEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---------C--C---------CcEEEEcccccc
Q 026558 49 QRILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---------R--P---------QLKYIKMDVRQM 106 (237)
Q Consensus 49 ~~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---------~--~---------~~~~~~~d~~~~ 106 (237)
++|.-||+|+ | .++..++..|+ .|+..|++++.++.+.+++.. . . ++.+ ..|+.+.
T Consensus 7 ~~VaViGaG~MG~giA~~~a~~G~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~-~~~l~~a 84 (319)
T 3ado_A 7 GDVLIVGSGLVGRSWAMLFASGGF-RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISS-CTNLAEA 84 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEE-ECCHHHH
T ss_pred CeEEEECCcHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhccc-ccchHhH
Confidence 4899999998 4 35555677777 999999999998887765521 0 0 0111 1121111
Q ss_pred ccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 107 DEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 107 ~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
-...|+|+-. +.+.+ +-.+++++++-++++|+.++.-.|.+-
T Consensus 85 ----~~~ad~ViEa-v~E~l-------~iK~~lf~~l~~~~~~~aIlaSNTSsl 126 (319)
T 3ado_A 85 ----VEGVVHIQEC-VPENL-------DLKRKIFAQLDSIVDDRVVLSSSSSCL 126 (319)
T ss_dssp ----TTTEEEEEEC-CCSCH-------HHHHHHHHHHHTTCCSSSEEEECCSSC
T ss_pred ----hccCcEEeec-cccHH-------HHHHHHHHHHHHHhhhcceeehhhhhc
Confidence 2456777754 44444 888999999999999999887766443
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=91.09 E-value=2.3 Score=33.33 Aligned_cols=73 Identities=18% Similarity=0.304 Sum_probs=51.3
Q ss_pred cEEEEcc-CCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--CCCcEEEEccccccccc---------cCCCc
Q 026558 50 RILIVGC-GNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEF---------QTGSF 114 (237)
Q Consensus 50 ~iLdlG~-G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~---------~~~~f 114 (237)
+||-.|+ |.|. +...+++.|. +++.++.++..++.+.+.+.. ..++.++.+|+.+.... .-+..
T Consensus 24 ~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i 102 (266)
T 3o38_A 24 VVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKAGRL 102 (266)
T ss_dssp EEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHhCCC
Confidence 7888886 5542 3445666776 899999999888777766632 24788999999875321 12478
Q ss_pred cEEEecccc
Q 026558 115 DSVVDKGTL 123 (237)
Q Consensus 115 D~I~~~~~l 123 (237)
|+++.+..+
T Consensus 103 d~li~~Ag~ 111 (266)
T 3o38_A 103 DVLVNNAGL 111 (266)
T ss_dssp CEEEECCCC
T ss_pred cEEEECCCc
Confidence 999998654
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.07 E-value=0.78 Score=38.26 Aligned_cols=92 Identities=18% Similarity=0.189 Sum_probs=54.6
Q ss_pred CcEEEEc-cCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc-c-ccCCCccEEEeccccc
Q 026558 49 QRILIVG-CGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD-E-FQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG-~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~-~~~~~fD~I~~~~~l~ 124 (237)
.+||-.| +|. |.....+++....++++++ ++..++.+++.-. ..++..+-.++. . .....+|+|+....-.
T Consensus 185 ~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa----~~v~~~~~~~~~~~~~~~~g~D~vid~~g~~ 259 (375)
T 2vn8_A 185 KRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRKLGA----DDVIDYKSGSVEEQLKSLKPFDFILDNVGGS 259 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTC----SEEEETTSSCHHHHHHTSCCBSEEEESSCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHHcCC----CEEEECCchHHHHHHhhcCCCCEEEECCCCh
Confidence 4899998 443 6677777765445899998 7777777754311 122211111111 0 1124699998753211
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...+....++|+++|+++...
T Consensus 260 ------------~~~~~~~~~~l~~~G~iv~~g 280 (375)
T 2vn8_A 260 ------------TETWAPDFLKKWSGATYVTLV 280 (375)
T ss_dssp ------------HHHHGGGGBCSSSCCEEEESC
T ss_pred ------------hhhhHHHHHhhcCCcEEEEeC
Confidence 124567788999999987754
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=90.91 E-value=3.9 Score=31.45 Aligned_cols=72 Identities=19% Similarity=0.304 Sum_probs=48.8
Q ss_pred cEEEEccCCchhHHHH----HHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc----c-----CCCccE
Q 026558 50 RILIVGCGNSAFSEGM----VDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF----Q-----TGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~----~-----~~~fD~ 116 (237)
+||-.|+ +|.++..+ ++.|. ++++++.++..++...+.+....++.++.+|+.+.... . -+.+|+
T Consensus 8 ~vlVtGa-sggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 85 (251)
T 1zk4_A 8 VAIITGG-TLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVST 85 (251)
T ss_dssp EEEETTT-TSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSCCE
T ss_pred EEEEeCC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhCCCCE
Confidence 6777775 55555444 45565 89999999887777666554335788899999774321 1 146899
Q ss_pred EEecccc
Q 026558 117 VVDKGTL 123 (237)
Q Consensus 117 I~~~~~l 123 (237)
|+.+...
T Consensus 86 li~~Ag~ 92 (251)
T 1zk4_A 86 LVNNAGI 92 (251)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9987654
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=90.88 E-value=2.1 Score=33.57 Aligned_cols=72 Identities=18% Similarity=0.273 Sum_probs=48.2
Q ss_pred cEEEEccCCchhHHHH----HHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc----c-----CCCccE
Q 026558 50 RILIVGCGNSAFSEGM----VDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF----Q-----TGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~----~-----~~~fD~ 116 (237)
+||-.|+ +|.++..+ ++.|. ++++++.++...+...+.+....++.++.+|+.+.... . -+..|+
T Consensus 18 ~vlITGa-sggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 95 (278)
T 2bgk_A 18 VAIITGG-AGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLDI 95 (278)
T ss_dssp EEEEEST-TSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred EEEEECC-CCHHHHHHHHHHHHCCC-EEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 7888885 45555444 45565 89999999877666555553323688999999875321 1 147899
Q ss_pred EEecccc
Q 026558 117 VVDKGTL 123 (237)
Q Consensus 117 I~~~~~l 123 (237)
++.+...
T Consensus 96 li~~Ag~ 102 (278)
T 2bgk_A 96 MFGNVGV 102 (278)
T ss_dssp EEECCCC
T ss_pred EEECCcc
Confidence 9987543
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=90.85 E-value=2.1 Score=36.81 Aligned_cols=102 Identities=15% Similarity=0.131 Sum_probs=59.6
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--C-------------CCcEEEEccccccccccCC
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--R-------------PQLKYIKMDVRQMDEFQTG 112 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~-------------~~~~~~~~d~~~~~~~~~~ 112 (237)
+|.-||+|. | .++..+++.|+ +|+++|++++.++..++.... . .++.+ ..|..+. -.
T Consensus 4 kI~VIG~G~vG~~lA~~La~~G~-~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~-t~d~~ea----~~ 77 (450)
T 3gg2_A 4 DIAVVGIGYVGLVSATCFAELGA-NVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRF-GTEIEQA----VP 77 (450)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE-ESCHHHH----GG
T ss_pred EEEEECcCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEE-ECCHHHH----Hh
Confidence 677888876 3 33445566776 999999999998887764311 0 11221 1222221 13
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
..|+|+..-+-..-..+.........+++.+...|++|-+++..+
T Consensus 78 ~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S 122 (450)
T 3gg2_A 78 EADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS 122 (450)
T ss_dssp GCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred cCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee
Confidence 468888753221100011122467888899999999887665544
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=90.83 E-value=1.2 Score=37.01 Aligned_cols=91 Identities=9% Similarity=0.089 Sum_probs=57.0
Q ss_pred CcEEEEccC--CchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccc----ccccCCCccEEEeccc
Q 026558 49 QRILIVGCG--NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM----DEFQTGSFDSVVDKGT 122 (237)
Q Consensus 49 ~~iLdlG~G--~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~----~~~~~~~fD~I~~~~~ 122 (237)
.+||-+|++ .|.....+++....+++++. +++-++.+++.-. ..++...-.++ .....+.+|+|+..-.
T Consensus 166 ~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa----~~vi~~~~~~~~~~v~~~t~g~~d~v~d~~g 240 (371)
T 3gqv_A 166 VYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKSRGA----EEVFDYRAPNLAQTIRTYTKNNLRYALDCIT 240 (371)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTC----SEEEETTSTTHHHHHHHHTTTCCCEEEESSC
T ss_pred cEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHHcCC----cEEEECCCchHHHHHHHHccCCccEEEECCC
Confidence 489999983 47777777776545888885 8888887776521 12222211111 1122456999987422
Q ss_pred cceeccCCCChHHHHHHHHHHHHhc-CCCcEEEEEE
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVL-KDKGVYILVT 157 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L-~pgG~l~~~~ 157 (237)
- ...++.+.+.| +++|+++...
T Consensus 241 ~-------------~~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 241 N-------------VESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp S-------------HHHHHHHHHHSCTTCEEEEESS
T ss_pred c-------------hHHHHHHHHHhhcCCCEEEEEe
Confidence 1 23567788888 6999987754
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=90.78 E-value=0.68 Score=40.41 Aligned_cols=88 Identities=17% Similarity=0.212 Sum_probs=54.5
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|+-+|+|. |......++....+|+++|.++..++.+++. ..++ .+..+. -...|+|+..-.-.++
T Consensus 275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~-----Ga~~--~~l~e~----l~~aDvVi~atgt~~~- 342 (494)
T 3ce6_A 275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMME-----GFDV--VTVEEA----IGDADIVVTATGNKDI- 342 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT-----TCEE--CCHHHH----GGGCSEEEECSSSSCS-
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-----CCEE--ecHHHH----HhCCCEEEECCCCHHH-
Confidence 3899999866 5444444443334999999999887777654 2232 233222 1358999885322221
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+-.+..+.|++||+++.....
T Consensus 343 -----------i~~~~l~~mk~ggilvnvG~~ 363 (494)
T 3ce6_A 343 -----------IMLEHIKAMKDHAILGNIGHF 363 (494)
T ss_dssp -----------BCHHHHHHSCTTCEEEECSSS
T ss_pred -----------HHHHHHHhcCCCcEEEEeCCC
Confidence 113567789999999776543
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=90.78 E-value=0.18 Score=42.42 Aligned_cols=99 Identities=9% Similarity=0.142 Sum_probs=55.5
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|+-+|+|. |......+.....+|+++|.++..++.+++.+.. .+.....+..++... -...|+|+........
T Consensus 169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~--~~~~~~~~~~~l~~~-l~~aDvVi~~~~~p~~- 244 (377)
T 2vhw_A 169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCG--RIHTRYSSAYELEGA-VKRADLVIGAVLVPGA- 244 (377)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTT--SSEEEECCHHHHHHH-HHHCSEEEECCCCTTS-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCC--eeEeccCCHHHHHHH-HcCCCEEEECCCcCCC-
Confidence 3899999855 4444444433334999999999988888775522 222221122222111 1358999874321100
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+...-+.+++.+.|+|||+++...
T Consensus 245 ------~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 245 ------KAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp ------CCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred ------CCcceecHHHHhcCCCCcEEEEEe
Confidence 000112456778899999887654
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=90.77 E-value=2.3 Score=33.99 Aligned_cols=92 Identities=21% Similarity=0.246 Sum_probs=57.4
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEE--------ccccccccccC--CCccEE
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK--------MDVRQMDEFQT--GSFDSV 117 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~--------~d~~~~~~~~~--~~fD~I 117 (237)
+|.-+|+|. | .++..+++.++ +++++|.+++.++.+++.. +.... .++.+..+... ..+|+|
T Consensus 5 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (316)
T 2ew2_A 5 KIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQWPAHIEAIRKNG-----LIADFNGEEVVANLPIFSPEEIDHQNEQVDLI 78 (316)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHC-----EEEEETTEEEEECCCEECGGGCCTTSCCCSEE
T ss_pred eEEEECcCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhCC-----EEEEeCCCeeEecceeecchhhcccCCCCCEE
Confidence 688899876 3 33444566666 8999999998888777652 11111 11111111111 268999
Q ss_pred EeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+..-. ......+++.+...++++..++...
T Consensus 79 i~~v~----------~~~~~~v~~~l~~~l~~~~~iv~~~ 108 (316)
T 2ew2_A 79 IALTK----------AQQLDAMFKAIQPMITEKTYVLCLL 108 (316)
T ss_dssp EECSC----------HHHHHHHHHHHGGGCCTTCEEEECC
T ss_pred EEEec----------cccHHHHHHHHHHhcCCCCEEEEec
Confidence 88532 2456778888888898887766544
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.74 E-value=3.1 Score=32.64 Aligned_cols=104 Identities=15% Similarity=0.205 Sum_probs=62.0
Q ss_pred cEEEEccCCchhHH----HHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccE
Q 026558 50 RILIVGCGNSAFSE----GMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~~~~----~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (237)
++|-.|++ |.++. .+++.|. +++.++.+++.++.+.+.+. .++.++.+|+.+.... .-+..|+
T Consensus 8 ~vlITGas-~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~ 83 (263)
T 2a4k_A 8 TILVTGAA-SGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALE--AEAIAVVADVSDPKAVEAVFAEALEEFGRLHG 83 (263)
T ss_dssp EEEEESTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCC--SSEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred EEEEECCC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--CceEEEEcCCCCHHHHHHHHHHHHHHcCCCcE
Confidence 68888864 44444 4455665 99999999988777666653 4678889999775321 1246899
Q ss_pred EEeccccceec-cCCCChHHHH-----------HHHHHHHHhcCCCcEEEEEE
Q 026558 117 VVDKGTLDSLL-CGSNSRQNAT-----------QMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 117 I~~~~~l~~~~-~~~~~~~~~~-----------~~l~~~~~~L~pgG~l~~~~ 157 (237)
++.+....... ....+.++.. .+++.+...++.+|.++...
T Consensus 84 lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 136 (263)
T 2a4k_A 84 VAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTG 136 (263)
T ss_dssp EEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 99876542210 0001222222 24455566664478777665
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=90.70 E-value=2.6 Score=30.01 Aligned_cols=94 Identities=9% Similarity=0.111 Sum_probs=58.3
Q ss_pred cEEEEccCCchhHHHHH----HcCCCeEEEEeCC-HHHHHHHHHHcCCCCCcEEEEccccccccc---cCCCccEEEecc
Q 026558 50 RILIVGCGNSAFSEGMV----DDGYEDVVNVDIS-SVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---QTGSFDSVVDKG 121 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~----~~~~~~~~~vD~s-~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---~~~~fD~I~~~~ 121 (237)
+|+-+|+ |..+..++ +.+. .++.+|.+ ++..+...+... .++.++.+|..+...+ .-...|+|++..
T Consensus 5 ~vlI~G~--G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~~~--~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~ 79 (153)
T 1id1_A 5 HFIVCGH--SILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLG--DNADVIPGDSNDSSVLKKAGIDRCRAILALS 79 (153)
T ss_dssp CEEEECC--SHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHC--TTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred cEEEECC--CHHHHHHHHHHHHCCC-CEEEEECCChHHHHHHHHhhc--CCCeEEEcCCCCHHHHHHcChhhCCEEEEec
Confidence 7888876 55554443 4455 89999997 455555544332 2578899998764311 235789988742
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
. .......+....+.+.|...++....
T Consensus 80 ~----------~d~~n~~~~~~a~~~~~~~~ii~~~~ 106 (153)
T 1id1_A 80 D----------NDADNAFVVLSAKDMSSDVKTVLAVS 106 (153)
T ss_dssp S----------CHHHHHHHHHHHHHHTSSSCEEEECS
T ss_pred C----------ChHHHHHHHHHHHHHCCCCEEEEEEC
Confidence 2 13345556667777777777766543
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=90.18 E-value=1.3 Score=35.65 Aligned_cols=93 Identities=15% Similarity=0.198 Sum_probs=58.4
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
+|.-||+|. | .+...+++.|+ +|++.|.+++.++.+.+.- ......+..+. -...|+|+..-+
T Consensus 9 ~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g-----~~~~~~~~~e~----~~~aDvvi~~vp----- 73 (303)
T 3g0o_A 9 HVGIVGLGSMGMGAARSCLRAGL-STWGADLNPQACANLLAEG-----ACGAAASAREF----AGVVDALVILVV----- 73 (303)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTT-----CSEEESSSTTT----TTTCSEEEECCS-----
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcC-----CccccCCHHHH----HhcCCEEEEECC-----
Confidence 788898877 3 34455566676 9999999999888777651 12212333332 245799988532
Q ss_pred cCCCChHHHHHHH---HHHHHhcCCCcEEEEEEcCCc
Q 026558 128 CGSNSRQNATQML---KEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 128 ~~~~~~~~~~~~l---~~~~~~L~pgG~l~~~~~~~~ 161 (237)
+......++ +.+...+++|.+++-.+-..+
T Consensus 74 ----~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~ 106 (303)
T 3g0o_A 74 ----NAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISS 106 (303)
T ss_dssp ----SHHHHHHHHC--CCCGGGSCTTCEEEECSCCCH
T ss_pred ----CHHHHHHHHhChhhHHhhCCCCCEEEecCCCCH
Confidence 223455555 667788888877765443344
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.18 E-value=3.5 Score=35.81 Aligned_cols=94 Identities=16% Similarity=0.233 Sum_probs=61.6
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-------CCC------------CcEEEEcccccccc
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-------NRP------------QLKYIKMDVRQMDE 108 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-------~~~------------~~~~~~~d~~~~~~ 108 (237)
+|.-||+|. | .++..+++.|+ .|++.|.+++.++.+++.+. ... ++.+ ..|...
T Consensus 7 kVgVIGaG~MG~~IA~~la~aG~-~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~--- 81 (483)
T 3mog_A 7 TVAVIGSGTMGAGIAEVAASHGH-QVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIP-VTDIHA--- 81 (483)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEE-ECCGGG---
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeE-eCCHHH---
Confidence 688889987 3 45566677776 89999999999998876421 111 1222 222221
Q ss_pred ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 109 ~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
-...|+|+..- .. .......+++++...++|+.+++..+.
T Consensus 82 --~~~aDlVIeAV-pe-------~~~vk~~v~~~l~~~~~~~~IlasntS 121 (483)
T 3mog_A 82 --LAAADLVIEAA-SE-------RLEVKKALFAQLAEVCPPQTLLTTNTS 121 (483)
T ss_dssp --GGGCSEEEECC-CC-------CHHHHHHHHHHHHHHSCTTCEEEECCS
T ss_pred --hcCCCEEEEcC-CC-------cHHHHHHHHHHHHHhhccCcEEEecCC
Confidence 13579998752 22 225567889999999999987765443
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=90.06 E-value=2.6 Score=32.92 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=49.4
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-CCCCcEEEEccccccccc---------cCCCccE
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (237)
++|--|++.|. +...+++.|. +++.++.++..++.+.+.+. ...++.++.+|+.+.... .-+..|+
T Consensus 14 ~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~ 92 (256)
T 3gaf_A 14 VAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGKITV 92 (256)
T ss_dssp EEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 77877765542 3334555665 89999999888777666553 235788899999875321 1247899
Q ss_pred EEecccc
Q 026558 117 VVDKGTL 123 (237)
Q Consensus 117 I~~~~~l 123 (237)
++.+...
T Consensus 93 lv~nAg~ 99 (256)
T 3gaf_A 93 LVNNAGG 99 (256)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9988654
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.06 E-value=2.5 Score=33.18 Aligned_cols=72 Identities=17% Similarity=0.279 Sum_probs=50.5
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-CCCCcEEEEccccccccc---------cCCCccE
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (237)
++|--|++.|. +...+++.|. +|+.++.+++.++.+.+.+. ...++.++.+|+.+.... .-+..|+
T Consensus 13 ~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~ 91 (264)
T 3ucx_A 13 VVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGRVDV 91 (264)
T ss_dssp EEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSCCSE
T ss_pred EEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCcE
Confidence 78888876652 3345566676 89999999988877766653 234788899999875421 1257999
Q ss_pred EEeccc
Q 026558 117 VVDKGT 122 (237)
Q Consensus 117 I~~~~~ 122 (237)
++.+..
T Consensus 92 lv~nAg 97 (264)
T 3ucx_A 92 VINNAF 97 (264)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 998763
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=90.01 E-value=3.3 Score=31.14 Aligned_cols=98 Identities=14% Similarity=0.175 Sum_probs=59.8
Q ss_pred cEEEEccCCchhHHHHH----HcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 50 RILIVGCGNSAFSEGMV----DDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~----~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
+||-.| |+|.++..++ +.++ +|++++.++..+.... ..++.++.+|+.+.....-..+|+|+......+
T Consensus 2 kilVtG-atG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~-----~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~ 74 (224)
T 3h2s_A 2 KIAVLG-ATGRAGSAIVAEARRRGH-EVLAVVRDPQKAADRL-----GATVATLVKEPLVLTEADLDSVDAVVDALSVPW 74 (224)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHT-----CTTSEEEECCGGGCCHHHHTTCSEEEECCCCCT
T ss_pred EEEEEc-CCCHHHHHHHHHHHHCCC-EEEEEEeccccccccc-----CCCceEEecccccccHhhcccCCEEEECCccCC
Confidence 577777 4666665554 4455 9999999987655331 147899999998764212246899998765421
Q ss_pred eccCCCChHHHHHHHHHHHHhcCC-CcEEEEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKD-KGVYILVT 157 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~p-gG~l~~~~ 157 (237)
. ............++.+.++. |+.+++.+
T Consensus 75 ~---~~~~~~n~~~~~~l~~a~~~~~~~~v~~S 104 (224)
T 3h2s_A 75 G---SGRGYLHLDFATHLVSLLRNSDTLAVFIL 104 (224)
T ss_dssp T---SSCTHHHHHHHHHHHHTCTTCCCEEEEEC
T ss_pred C---cchhhHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 0 01123334455666666654 35666653
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=89.91 E-value=0.2 Score=41.95 Aligned_cols=99 Identities=11% Similarity=0.179 Sum_probs=56.7
Q ss_pred CcEEEEccCC-chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+|+-+|+|. |.....++.. |. +++++|.+++.++.+++.... .+.....+..++.. .-..+|+|+..-.....
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~DvVI~~~~~~~~ 243 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS--RVELLYSNSAEIET-AVAEADLLIGAVLVPGR 243 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG--GSEEEECCHHHHHH-HHHTCSEEEECCCCTTS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCc--eeEeeeCCHHHHHH-HHcCCCEEEECCCcCCC
Confidence 4899999855 4444444443 44 999999999988888766421 22222222222210 11368999875432110
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
....-+.+.+.+.|+|||+++...+
T Consensus 244 -------~~~~li~~~~~~~~~~g~~ivdv~~ 268 (361)
T 1pjc_A 244 -------RAPILVPASLVEQMRTGSVIVDVAV 268 (361)
T ss_dssp -------SCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred -------CCCeecCHHHHhhCCCCCEEEEEec
Confidence 0001123456788999998876654
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=89.88 E-value=1.5 Score=35.25 Aligned_cols=73 Identities=19% Similarity=0.294 Sum_probs=50.8
Q ss_pred cEEEEccCCc---hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccc---------cCCCccE
Q 026558 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G---~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (237)
+||-.|++.| .+...+++.|. ++++++.++..++.+.+.+.. ..++.++.+|+.+.... .-+..|+
T Consensus 33 ~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~ 111 (301)
T 3tjr_A 33 AAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGGVDV 111 (301)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSCSE
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCCCCE
Confidence 7888887654 23344555665 899999999888877766532 24788899999875421 1247999
Q ss_pred EEecccc
Q 026558 117 VVDKGTL 123 (237)
Q Consensus 117 I~~~~~l 123 (237)
++.+..+
T Consensus 112 lvnnAg~ 118 (301)
T 3tjr_A 112 VFSNAGI 118 (301)
T ss_dssp EEECCCC
T ss_pred EEECCCc
Confidence 9988654
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=89.86 E-value=6 Score=31.26 Aligned_cols=105 Identities=17% Similarity=0.189 Sum_probs=63.1
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccEE
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDSV 117 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~I 117 (237)
++|--|++.|. +...+++.|. +++.+|.++..++...+... ..+.++.+|+.+.... .-+..|++
T Consensus 29 ~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l 105 (277)
T 4dqx_A 29 VCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEIG--SKAFGVRVDVSSAKDAESMVEKTTAKWGRVDVL 105 (277)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHC--TTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC--CceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 78888865542 3344555665 99999999888777666542 3678889999875321 12478999
Q ss_pred Eeccccceec-cCCCChHHHH-----------HHHHHHHHhcCC--CcEEEEEE
Q 026558 118 VDKGTLDSLL-CGSNSRQNAT-----------QMLKEVWRVLKD--KGVYILVT 157 (237)
Q Consensus 118 ~~~~~l~~~~-~~~~~~~~~~-----------~~l~~~~~~L~p--gG~l~~~~ 157 (237)
+.+....... ....+.+... .+++.+.+.++. +|.++..+
T Consensus 106 v~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~is 159 (277)
T 4dqx_A 106 VNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTT 159 (277)
T ss_dssp EECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEEC
T ss_pred EECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEC
Confidence 9986543221 0111223332 234556666654 46776654
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.85 E-value=4.4 Score=31.18 Aligned_cols=72 Identities=13% Similarity=0.182 Sum_probs=49.0
Q ss_pred CcEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc----c-cCCCccEEEec
Q 026558 49 QRILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE----F-QTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~----~-~~~~fD~I~~~ 120 (237)
++||-.|++.|. +...+++.|. +++.++.++..++...+.+. .++.+..+|+.+... + ..+..|+++.+
T Consensus 15 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~ 91 (249)
T 3f9i_A 15 KTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNALK--DNYTIEVCNLANKEECSNLISKTSNLDILVCN 91 (249)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC--SSEEEEECCTTSHHHHHHHHHTCSCCSEEEEC
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhc--cCccEEEcCCCCHHHHHHHHHhcCCCCEEEEC
Confidence 378888865442 3334455665 89999999988888776664 367888889876432 1 12478999987
Q ss_pred ccc
Q 026558 121 GTL 123 (237)
Q Consensus 121 ~~l 123 (237)
...
T Consensus 92 Ag~ 94 (249)
T 3f9i_A 92 AGI 94 (249)
T ss_dssp CC-
T ss_pred CCC
Confidence 654
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=89.82 E-value=2.4 Score=33.19 Aligned_cols=72 Identities=14% Similarity=0.186 Sum_probs=49.5
Q ss_pred cEEEEccCCchhHHH----HHHcCCCeEEEEeCCHHHHHHHHHHcC-CCCCcEEEEccccccccc---------cCCCcc
Q 026558 50 RILIVGCGNSAFSEG----MVDDGYEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEF---------QTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~----~~~~~~~~~~~vD~s~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~---------~~~~fD 115 (237)
+||-.|++ |.++.. +++.|. +++.++.++..++.+.+.+. ...++.++.+|+.+.... .-+..|
T Consensus 31 ~vlITGas-~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id 108 (262)
T 3rkr_A 31 VAVVTGAS-RGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHGRCD 108 (262)
T ss_dssp EEEESSTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCCS
T ss_pred EEEEECCC-ChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcCCCC
Confidence 78888864 444444 455565 89999999988877766653 224678899999775421 124789
Q ss_pred EEEecccc
Q 026558 116 SVVDKGTL 123 (237)
Q Consensus 116 ~I~~~~~l 123 (237)
+++.+...
T Consensus 109 ~lv~~Ag~ 116 (262)
T 3rkr_A 109 VLVNNAGV 116 (262)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99987654
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=89.70 E-value=1.9 Score=33.70 Aligned_cols=71 Identities=28% Similarity=0.444 Sum_probs=49.1
Q ss_pred cEEEEccCCc---hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccEE
Q 026558 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDSV 117 (237)
Q Consensus 50 ~iLdlG~G~G---~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~I 117 (237)
+||-.|++.| .+...+++.|. +++.+|.++..++.+.+.+. .++.++.+|+.+.... .-+..|++
T Consensus 10 ~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l 86 (259)
T 4e6p_A 10 SALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEIG--PAAYAVQMDVTRQDSIDAAIAATVEHAGGLDIL 86 (259)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC--TTEEEEECCTTCHHHHHHHHHHHHHHSSSCCEE
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC--CCceEEEeeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 7888886544 23344555665 89999999988877766653 3678899999875321 12479999
Q ss_pred Eecccc
Q 026558 118 VDKGTL 123 (237)
Q Consensus 118 ~~~~~l 123 (237)
+.+...
T Consensus 87 v~~Ag~ 92 (259)
T 4e6p_A 87 VNNAAL 92 (259)
T ss_dssp EECCCC
T ss_pred EECCCc
Confidence 998654
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=89.69 E-value=2 Score=33.58 Aligned_cols=73 Identities=11% Similarity=0.250 Sum_probs=50.1
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccc--------cCCCccEE
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF--------QTGSFDSV 117 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~--------~~~~fD~I 117 (237)
++|-.|++.|. +...+++.|. +|+.++.++..++.+.+.+.. ..++.++.+|+.+.... ..+..|++
T Consensus 9 ~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~id~l 87 (252)
T 3h7a_A 9 TVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAPLEVT 87 (252)
T ss_dssp EEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSCEEEE
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCCceEE
Confidence 78888876552 3344556666 899999998877776666532 24788899999875321 11578999
Q ss_pred Eecccc
Q 026558 118 VDKGTL 123 (237)
Q Consensus 118 ~~~~~l 123 (237)
+.+...
T Consensus 88 v~nAg~ 93 (252)
T 3h7a_A 88 IFNVGA 93 (252)
T ss_dssp EECCCC
T ss_pred EECCCc
Confidence 987654
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=89.68 E-value=2.5 Score=33.47 Aligned_cols=90 Identities=17% Similarity=0.229 Sum_probs=55.0
Q ss_pred cEEEEccCC-ch-hHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCC-CccEEEeccccce
Q 026558 50 RILIVGCGN-SA-FSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTG-SFDSVVDKGTLDS 125 (237)
Q Consensus 50 ~iLdlG~G~-G~-~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~-~fD~I~~~~~l~~ 125 (237)
+|.-||+|. |. +...+.+.++ .+++++|.+++.++.+++.- -......|..+. -. ..|+|+..-.
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g----~~~~~~~~~~~~----~~~~aDvVilavp--- 71 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG----IIDEGTTSIAKV----EDFSPDFVMLSSP--- 71 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT----SCSEEESCGGGG----GGTCCSEEEECSC---
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCC----CcccccCCHHHH----hcCCCCEEEEcCC---
Confidence 577888876 43 3334455553 27999999998888766431 111112232222 13 6899988532
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
......++.++...++++.+++...
T Consensus 72 -------~~~~~~v~~~l~~~l~~~~iv~~~~ 96 (281)
T 2g5c_A 72 -------VRTFREIAKKLSYILSEDATVTDQG 96 (281)
T ss_dssp -------HHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred -------HHHHHHHHHHHHhhCCCCcEEEECC
Confidence 2455678888888899888665543
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=89.67 E-value=5.5 Score=30.29 Aligned_cols=71 Identities=15% Similarity=0.129 Sum_probs=48.3
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc------ccCCCccEEEec
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE------FQTGSFDSVVDK 120 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~------~~~~~fD~I~~~ 120 (237)
+||-.|++.|. +...+++.|. +++.++.++..++.+.+.+. .++.++.+|+.+... --...+|+++.+
T Consensus 3 ~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~~ 79 (230)
T 3guy_A 3 LIVITGASSGLGAELAKLYDAEGK-ATYLTGRSESKLSTVTNCLS--NNVGYRARDLASHQEVEQLFEQLDSIPSTVVHS 79 (230)
T ss_dssp CEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTCS--SCCCEEECCTTCHHHHHHHHHSCSSCCSEEEEC
T ss_pred EEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHh--hccCeEeecCCCHHHHHHHHHHHhhcCCEEEEe
Confidence 57777865442 3334455665 89999999988888777662 467888999987432 113456999887
Q ss_pred ccc
Q 026558 121 GTL 123 (237)
Q Consensus 121 ~~l 123 (237)
...
T Consensus 80 Ag~ 82 (230)
T 3guy_A 80 AGS 82 (230)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.67 E-value=7.7 Score=32.36 Aligned_cols=94 Identities=14% Similarity=0.071 Sum_probs=62.1
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCC--CcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRP--QLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~--~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
++||.++.+.|.++..++... ++.+.-|-...+.++.|+. +.. .+.+.. ..+- ....+|+|+...+
T Consensus 40 ~~~~~~~d~~gal~~~~~~~~---~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~--~~~~---~~~~~~~v~~~lp-- 109 (375)
T 4dcm_A 40 GPVLILNDAFGALSCALAEHK---PYSIGDSYISELATRENLRLNGIDESSVKFLD--STAD---YPQQPGVVLIKVP-- 109 (375)
T ss_dssp SCEEEECCSSSHHHHHTGGGC---CEEEESCHHHHHHHHHHHHHTTCCGGGSEEEE--TTSC---CCSSCSEEEEECC--
T ss_pred CCEEEECCCCCHHHHhhccCC---ceEEEhHHHHHHHHHHHHHHcCCCccceEecc--cccc---cccCCCEEEEEcC--
Confidence 489999999999999887653 3444335555555555552 212 244432 2221 2467999987543
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.+.......|..+...|++|+.+++..-
T Consensus 110 ------k~~~~l~~~L~~l~~~l~~~~~i~~~g~ 137 (375)
T 4dcm_A 110 ------KTLALLEQQLRALRKVVTSDTRIIAGAK 137 (375)
T ss_dssp ------SCHHHHHHHHHHHHTTCCTTSEEEEEEE
T ss_pred ------CCHHHHHHHHHHHHhhCCCCCEEEEEec
Confidence 2346778889999999999999877653
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=89.61 E-value=2.7 Score=33.27 Aligned_cols=73 Identities=21% Similarity=0.305 Sum_probs=49.2
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC----CCcEEEEccccccccc---------cCCC
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR----PQLKYIKMDVRQMDEF---------QTGS 113 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~~~~~~---------~~~~ 113 (237)
+||--|++.|. +...+++.|. +|+.+|.++..++.+.+.+... .++.++.+|+.+.... .-+.
T Consensus 13 ~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 91 (281)
T 3svt_A 13 TYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAWHGR 91 (281)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 78888865442 3344555665 8999999998877776665321 2678899999875321 1247
Q ss_pred ccEEEecccc
Q 026558 114 FDSVVDKGTL 123 (237)
Q Consensus 114 fD~I~~~~~l 123 (237)
.|+++.+...
T Consensus 92 id~lv~nAg~ 101 (281)
T 3svt_A 92 LHGVVHCAGG 101 (281)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCc
Confidence 8999987654
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=89.54 E-value=0.96 Score=37.65 Aligned_cols=66 Identities=23% Similarity=0.341 Sum_probs=42.9
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccccc--CCCccEEEecc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQ--TGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~--~~~fD~I~~~~ 121 (237)
.+||-||||. |......+...+ .++.+|++...++.+++. +..+..|+.+...+. -...|+|++..
T Consensus 17 mkilvlGaG~vG~~~~~~L~~~~-~v~~~~~~~~~~~~~~~~------~~~~~~d~~d~~~l~~~~~~~DvVi~~~ 85 (365)
T 3abi_A 17 MKVLILGAGNIGRAIAWDLKDEF-DVYIGDVNNENLEKVKEF------ATPLKVDASNFDKLVEVMKEFELVIGAL 85 (365)
T ss_dssp CEEEEECCSHHHHHHHHHHTTTS-EEEEEESCHHHHHHHTTT------SEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred cEEEEECCCHHHHHHHHHHhcCC-CeEEEEcCHHHHHHHhcc------CCcEEEecCCHHHHHHHHhCCCEEEEec
Confidence 4899999854 443333333334 899999999888776543 456677876643221 25689999864
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=89.53 E-value=1.1 Score=36.99 Aligned_cols=90 Identities=7% Similarity=0.114 Sum_probs=52.8
Q ss_pred cEEEE-ccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc----c-cCCCccEEEeccc
Q 026558 50 RILIV-GCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE----F-QTGSFDSVVDKGT 122 (237)
Q Consensus 50 ~iLdl-G~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~----~-~~~~fD~I~~~~~ 122 (237)
+||-. |+|. |..+..+++....++++++.+++.++.+++.-. ..++..+-.++.. . ....+|+|+....
T Consensus 167 ~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga----~~~~~~~~~~~~~~v~~~~~~~g~D~vid~~g 242 (349)
T 3pi7_A 167 AFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGA----AHVLNEKAPDFEATLREVMKAEQPRIFLDAVT 242 (349)
T ss_dssp EEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTC----SEEEETTSTTHHHHHHHHHHHHCCCEEEESSC
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC----CEEEECCcHHHHHHHHHHhcCCCCcEEEECCC
Confidence 55544 3332 455555555433499999999999998886521 1222221111110 1 1247999987432
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...+..+.++|+++|++++..
T Consensus 243 --------------~~~~~~~~~~l~~~G~iv~~G 263 (349)
T 3pi7_A 243 --------------GPLASAIFNAMPKRARWIIYG 263 (349)
T ss_dssp --------------HHHHHHHHHHSCTTCEEEECC
T ss_pred --------------ChhHHHHHhhhcCCCEEEEEe
Confidence 112467889999999998864
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=89.50 E-value=0.37 Score=40.93 Aligned_cols=43 Identities=9% Similarity=-0.076 Sum_probs=36.9
Q ss_pred cEEEEccCCchhHHHHHHcC--CCe----EEEEeCCHHHHHHHHHHcCC
Q 026558 50 RILIVGCGNSAFSEGMVDDG--YED----VVNVDISSVVIEAMMKKYSN 92 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~--~~~----~~~vD~s~~~~~~a~~~~~~ 92 (237)
+|||+.||.|.....+.+.| ... +.++|+++.+++.-+.++..
T Consensus 12 rvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~ 60 (403)
T 4dkj_A 12 KVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK 60 (403)
T ss_dssp EEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred eEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence 89999999999999988876 334 88999999999998888753
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=89.41 E-value=2.8 Score=32.65 Aligned_cols=106 Identities=15% Similarity=0.239 Sum_probs=62.6
Q ss_pred cEEEEccCCchhHHH----HHH-cCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccc----c-----CCCc
Q 026558 50 RILIVGCGNSAFSEG----MVD-DGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF----Q-----TGSF 114 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~----~~~-~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~----~-----~~~f 114 (237)
+||-.|+ +|.++.. +++ .+. ++++++.++...+.+.+.+.. ..++.++.+|+.+.... . -+.+
T Consensus 6 ~vlITGa-sggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 83 (276)
T 1wma_A 6 VALVTGG-NKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGL 83 (276)
T ss_dssp EEEESSC-SSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSSE
T ss_pred EEEEeCC-CcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 6777774 5555544 455 565 899999998776665555421 24688999999875321 1 1378
Q ss_pred cEEEeccccceeccCCCC-hHHH-----------HHHHHHHHHhcCCCcEEEEEE
Q 026558 115 DSVVDKGTLDSLLCGSNS-RQNA-----------TQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~-~~~~-----------~~~l~~~~~~L~pgG~l~~~~ 157 (237)
|+|+.+............ .++. ..+++.+.+.++++|.+++..
T Consensus 84 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~s 138 (276)
T 1wma_A 84 DVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 138 (276)
T ss_dssp EEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence 999987643321100011 1222 235556666676678877764
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=89.38 E-value=6.5 Score=30.72 Aligned_cols=73 Identities=14% Similarity=0.082 Sum_probs=49.6
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC---CCCCcEEEEccccccccc---------cCCCc
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYS---NRPQLKYIKMDVRQMDEF---------QTGSF 114 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~~~~---------~~~~f 114 (237)
.+|--|++.|. +...+++.|. +|+.++.+++.++.+.+.+. ...++.++.+|+.+.... .-+..
T Consensus 10 ~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 88 (265)
T 3lf2_A 10 VAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTLGCA 88 (265)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHHCSC
T ss_pred EEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 78888866542 3344556665 89999999988777666552 223578889999875321 12578
Q ss_pred cEEEecccc
Q 026558 115 DSVVDKGTL 123 (237)
Q Consensus 115 D~I~~~~~l 123 (237)
|+++.+...
T Consensus 89 d~lvnnAg~ 97 (265)
T 3lf2_A 89 SILVNNAGQ 97 (265)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999998654
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=89.36 E-value=4.1 Score=37.43 Aligned_cols=99 Identities=14% Similarity=0.214 Sum_probs=66.9
Q ss_pred CcEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-------------CCC---CcEEEEcccccccccc
Q 026558 49 QRILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-------------NRP---QLKYIKMDVRQMDEFQ 110 (237)
Q Consensus 49 ~~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-------------~~~---~~~~~~~d~~~~~~~~ 110 (237)
.+|--||+|+ | .+...++..|. .|+..|++++.++.+++.+. ... ..-....|...+
T Consensus 317 ~~v~ViGaG~MG~gIA~~~a~aG~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l---- 391 (742)
T 3zwc_A 317 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKEL---- 391 (742)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGGG----
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-chhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHHH----
Confidence 3899999999 3 34455566676 99999999999888776541 000 001112222222
Q ss_pred CCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 111 ~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
...|+|+-. +++.+ +..+++++++-.+++|+.++...|.+-+
T Consensus 392 -~~aDlVIEA-V~E~l-------~iK~~vf~~le~~~~~~aIlASNTSsl~ 433 (742)
T 3zwc_A 392 -STVDLVVEA-VFEDM-------NLKKKVFAELSALCKPGAFLCTNTSALN 433 (742)
T ss_dssp -GSCSEEEEC-CCSCH-------HHHHHHHHHHHHHSCTTCEEEECCSSSC
T ss_pred -hhCCEEEEe-ccccH-------HHHHHHHHHHhhcCCCCceEEecCCcCC
Confidence 357888875 55555 8899999999999999998877664433
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.21 E-value=4.4 Score=31.15 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=48.9
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccEE
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDSV 117 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~I 117 (237)
+||-.|++.|. +...+++.|. +++.++.++..++.+.+.+.. ++.++.+|+.+.... .-+..|++
T Consensus 5 ~vlVTGas~GIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l 81 (235)
T 3l6e_A 5 HIIVTGAGSGLGRALTIGLVERGH-QVSMMGRRYQRLQQQELLLGN--AVIGIVADLAHHEDVDVAFAAAVEWGGLPELV 81 (235)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG--GEEEEECCTTSHHHHHHHHHHHHHHHCSCSEE
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcC--CceEEECCCCCHHHHHHHHHHHHHhcCCCcEE
Confidence 67888865542 3344555665 899999999888877766532 578899999874321 12478999
Q ss_pred Eecccc
Q 026558 118 VDKGTL 123 (237)
Q Consensus 118 ~~~~~l 123 (237)
+.+...
T Consensus 82 vnnAg~ 87 (235)
T 3l6e_A 82 LHCAGT 87 (235)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 987654
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=89.20 E-value=1.1 Score=36.55 Aligned_cols=73 Identities=16% Similarity=0.366 Sum_probs=50.2
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccc---------cCCCc
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEF---------QTGSF 114 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~---------~~~~f 114 (237)
+||--|++.|. +...+++.|. +|++++.++..++.+.+.+.. ..++.++.+|+.+...+ .-+..
T Consensus 10 ~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i 88 (319)
T 3ioy_A 10 TAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFGPV 88 (319)
T ss_dssp EEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHTCCE
T ss_pred EEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhCCCC
Confidence 78888876552 3344556676 899999999888777665521 12678899999875321 12578
Q ss_pred cEEEecccc
Q 026558 115 DSVVDKGTL 123 (237)
Q Consensus 115 D~I~~~~~l 123 (237)
|+++.+..+
T Consensus 89 d~lv~nAg~ 97 (319)
T 3ioy_A 89 SILCNNAGV 97 (319)
T ss_dssp EEEEECCCC
T ss_pred CEEEECCCc
Confidence 999998654
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=89.16 E-value=2.8 Score=33.07 Aligned_cols=86 Identities=13% Similarity=0.079 Sum_probs=54.3
Q ss_pred cEEEEccCC-ch-hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 50 RILIVGCGN-SA-FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 50 ~iLdlG~G~-G~-~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
+|.-||||. |. +...+.+.++ +++++|.+++.++.+.+.- .. ..+ .. +.... ...|+|+..-.
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g--~~-~~~-~~---~~~~~--~~~D~vi~av~----- 66 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQ--LV-DEA-GQ---DLSLL--QTAKIIFLCTP----- 66 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTT--SC-SEE-ES---CGGGG--TTCSEEEECSC-----
T ss_pred EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhCC--CC-ccc-cC---CHHHh--CCCCEEEEECC-----
Confidence 577788876 33 3344555666 8999999998887775431 01 111 11 22212 56899988532
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEE
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 155 (237)
......+++++...++++..++-
T Consensus 67 -----~~~~~~~~~~l~~~~~~~~~vv~ 89 (279)
T 2f1k_A 67 -----IQLILPTLEKLIPHLSPTAIVTD 89 (279)
T ss_dssp -----HHHHHHHHHHHGGGSCTTCEEEE
T ss_pred -----HHHHHHHHHHHHhhCCCCCEEEE
Confidence 34567788888888888876644
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=88.73 E-value=2.4 Score=33.21 Aligned_cols=107 Identities=13% Similarity=0.105 Sum_probs=62.7
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEE-eCCHHHHHHHHHHcC-CCCCcEEEEccccccccc---------cCCCcc
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNV-DISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEF---------QTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~v-D~s~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~---------~~~~fD 115 (237)
++|--|++.|. +...+++.|. +++.+ +.++...+.+.+.+. ...++.++.+|+.+.... .-+..|
T Consensus 10 ~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id 88 (259)
T 3edm_A 10 TIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFGEIH 88 (259)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHCSEE
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCC
Confidence 78888866542 3344556665 78777 666666665555543 235788999999875321 124789
Q ss_pred EEEeccccceec--cCCCChHHHH-----------HHHHHHHHhcCCCcEEEEEE
Q 026558 116 SVVDKGTLDSLL--CGSNSRQNAT-----------QMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 116 ~I~~~~~l~~~~--~~~~~~~~~~-----------~~l~~~~~~L~pgG~l~~~~ 157 (237)
+++.+....... ....+.+... .+++.+.+.++++|.++..+
T Consensus 89 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 143 (259)
T 3edm_A 89 GLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS 143 (259)
T ss_dssp EEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred EEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 999876432110 1111222222 35566667777778877754
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=88.72 E-value=4.9 Score=30.56 Aligned_cols=69 Identities=19% Similarity=0.320 Sum_probs=46.9
Q ss_pred cEEEEccCCchhHHHH----HHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc----c-----CCCccE
Q 026558 50 RILIVGCGNSAFSEGM----VDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF----Q-----TGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~----~-----~~~fD~ 116 (237)
+||-.|+ +|.++..+ ++.|+ ++++++.++..++...+.+ .++.++.+|+.+.... . -+.+|+
T Consensus 7 ~vlVtGa-sggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 81 (234)
T 2ehd_A 7 AVLITGA-SRGIGEATARLLHAKGY-RVGLMARDEKRLQALAAEL---EGALPLPGDVREEGDWARAVAAMEEAFGELSA 81 (234)
T ss_dssp EEEESST-TSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS---TTCEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred EEEEECC-CcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---hhceEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 6777775 55555544 45565 8999999988777666655 2678889999774321 1 147899
Q ss_pred EEecccc
Q 026558 117 VVDKGTL 123 (237)
Q Consensus 117 I~~~~~l 123 (237)
++.+...
T Consensus 82 li~~Ag~ 88 (234)
T 2ehd_A 82 LVNNAGV 88 (234)
T ss_dssp EEECCCC
T ss_pred EEECCCc
Confidence 9987654
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=88.66 E-value=2.4 Score=32.99 Aligned_cols=70 Identities=23% Similarity=0.365 Sum_probs=46.6
Q ss_pred cEEEEccCCchhHH----HHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccccc---------CCCccE
Q 026558 50 RILIVGCGNSAFSE----GMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQ---------TGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~~~~----~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~---------~~~fD~ 116 (237)
+||-.|++ |.++. .+++.|. +++.++.+++.++.+.+.+ ..++.++.+|+.+..... -+..|+
T Consensus 7 ~vlVTGas-~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~ 82 (254)
T 1hdc_A 7 TVIITGGA-RGLGAEAARQAVAAGA-RVVLADVLDEEGAATAREL--GDAARYQHLDVTIEEDWQRVVAYAREEFGSVDG 82 (254)
T ss_dssp EEEEETTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT--GGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred EEEEECCC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh--CCceeEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 78888864 44444 4455665 8999999988777665544 135778888987643211 147899
Q ss_pred EEecccc
Q 026558 117 VVDKGTL 123 (237)
Q Consensus 117 I~~~~~l 123 (237)
++.+...
T Consensus 83 lv~nAg~ 89 (254)
T 1hdc_A 83 LVNNAGI 89 (254)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9987654
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=88.53 E-value=3.5 Score=32.28 Aligned_cols=93 Identities=12% Similarity=0.246 Sum_probs=58.5
Q ss_pred cEEEEccCC-ch-hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 50 RILIVGCGN-SA-FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 50 ~iLdlG~G~-G~-~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
+|.-+|||. |. +...+.+.++..++.+|.+++.++.+.+.. ++.+ ..|..+. -...|+|+..-.
T Consensus 12 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~----g~~~-~~~~~~~----~~~~Dvvi~av~----- 77 (266)
T 3d1l_A 12 PIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKV----EAEY-TTDLAEV----NPYAKLYIVSLK----- 77 (266)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT----TCEE-ESCGGGS----CSCCSEEEECCC-----
T ss_pred eEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc----CCce-eCCHHHH----hcCCCEEEEecC-----
Confidence 788899875 43 334455566623899999999888777664 2332 2233232 135799988532
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
......+++.+...+++|..++-.+-..+
T Consensus 78 -----~~~~~~v~~~l~~~~~~~~ivv~~s~~~~ 106 (266)
T 3d1l_A 78 -----DSAFAELLQGIVEGKREEALMVHTAGSIP 106 (266)
T ss_dssp -----HHHHHHHHHHHHTTCCTTCEEEECCTTSC
T ss_pred -----HHHHHHHHHHHHhhcCCCcEEEECCCCCc
Confidence 23457788888888888776655543333
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=88.48 E-value=2.9 Score=33.62 Aligned_cols=94 Identities=17% Similarity=0.225 Sum_probs=58.1
Q ss_pred cEEEEccCC-ch-hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC---------CC---------------CCcEEEEccc
Q 026558 50 RILIVGCGN-SA-FSEGMVDDGYEDVVNVDISSVVIEAMMKKYS---------NR---------------PQLKYIKMDV 103 (237)
Q Consensus 50 ~iLdlG~G~-G~-~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~---------~~---------------~~~~~~~~d~ 103 (237)
+|.-||+|. |. ++..+++.|+ +|+++|.+++.++.+++.+. +. .++.+ ..|.
T Consensus 17 ~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~-~~~~ 94 (302)
T 1f0y_A 17 HVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT-STDA 94 (302)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE-ESCH
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEE-ecCH
Confidence 799999987 43 5566677776 99999999998887654321 10 01121 1222
Q ss_pred cccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 104 RQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 104 ~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+. -...|+|+..-+ . ..+....+++++...++++.+++..+
T Consensus 95 ~~~----~~~aD~Vi~avp-~-------~~~~~~~v~~~l~~~~~~~~iv~s~t 136 (302)
T 1f0y_A 95 ASV----VHSTDLVVEAIV-E-------NLKVKNELFKRLDKFAAEHTIFASNT 136 (302)
T ss_dssp HHH----TTSCSEEEECCC-S-------CHHHHHHHHHHHTTTSCTTCEEEECC
T ss_pred HHh----hcCCCEEEEcCc-C-------cHHHHHHHHHHHHhhCCCCeEEEECC
Confidence 211 246799987532 1 12445678888888888887664333
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=88.46 E-value=3.2 Score=32.77 Aligned_cols=107 Identities=13% Similarity=0.186 Sum_probs=65.1
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-CCCCcEEEEcccccccc---------ccCCCccE
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDE---------FQTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~---------~~~~~fD~ 116 (237)
.+|--|++.|. ....+++.|. +|+.+|.+++.++.+.+.+. ...++.++.+|+.+... -.-++.|+
T Consensus 11 valVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDi 89 (255)
T 4g81_D 11 TALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHVDI 89 (255)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCCCE
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCCcE
Confidence 66666765552 3344556665 99999999988887766653 23577888899977432 12367999
Q ss_pred EEeccccceec-cCCCChHHHHH-----------HHHHHHHhc---CCCcEEEEEE
Q 026558 117 VVDKGTLDSLL-CGSNSRQNATQ-----------MLKEVWRVL---KDKGVYILVT 157 (237)
Q Consensus 117 I~~~~~l~~~~-~~~~~~~~~~~-----------~l~~~~~~L---~pgG~l~~~~ 157 (237)
++.+..+...- ...-+.++..+ +.+.+.+.| ..+|.++...
T Consensus 90 LVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnis 145 (255)
T 4g81_D 90 LINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIG 145 (255)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEe
Confidence 99986543220 00112333332 445566666 2467777654
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=88.46 E-value=5.5 Score=30.97 Aligned_cols=72 Identities=13% Similarity=0.223 Sum_probs=47.8
Q ss_pred cEEEEccCCchhHHH----HHHcCCCeEEEEeCCHHHHHHHHHHcC-CCCCcEEEEccccccccc----c-----C-CCc
Q 026558 50 RILIVGCGNSAFSEG----MVDDGYEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEF----Q-----T-GSF 114 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~----~~~~~~~~~~~vD~s~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~----~-----~-~~f 114 (237)
+||-.|++ |.++.. +++.|. +|++++.++..++.+.+.+. ...++.++.+|+.+.... . - +..
T Consensus 11 ~vlVTGas-~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~i 88 (260)
T 2ae2_A 11 TALVTGGS-RGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGKL 88 (260)
T ss_dssp EEEEESCS-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTCC
T ss_pred EEEEECCC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 78888864 444444 455665 89999999887766555442 124678889999875321 1 1 679
Q ss_pred cEEEecccc
Q 026558 115 DSVVDKGTL 123 (237)
Q Consensus 115 D~I~~~~~l 123 (237)
|+++.+...
T Consensus 89 d~lv~~Ag~ 97 (260)
T 2ae2_A 89 NILVNNAGI 97 (260)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 999988654
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=88.27 E-value=5.5 Score=31.24 Aligned_cols=108 Identities=21% Similarity=0.239 Sum_probs=63.3
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeC-CHHHHHHHHHHcC-CCCCcEEEEccccccccc---------cCCCcc
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDI-SSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEF---------QTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~-s~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~---------~~~~fD 115 (237)
++|--|++.|. +...+++.|. +++.++. ++...+...+.+. ...++.++.+|+.+.... .-+..|
T Consensus 20 ~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id 98 (270)
T 3is3_A 20 VALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFGHLD 98 (270)
T ss_dssp EEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 78878865542 3344555665 8888776 4555555444442 225788899999875421 124789
Q ss_pred EEEeccccceec-cCCCChHHHH-----------HHHHHHHHhcCCCcEEEEEEc
Q 026558 116 SVVDKGTLDSLL-CGSNSRQNAT-----------QMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 116 ~I~~~~~l~~~~-~~~~~~~~~~-----------~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+++.+....... ....+.++.. .+++.+.+.++++|.+++...
T Consensus 99 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 99 IAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp EEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 999876543210 0001223222 356677888888888877653
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.25 E-value=3.4 Score=32.59 Aligned_cols=73 Identities=18% Similarity=0.206 Sum_probs=49.2
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccc---------cCCCccE
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (237)
++|-.|++.|. +...+++.|. +++.++.++..++.+.+.+.. ..++.++.+|+.+.... .-+..|+
T Consensus 6 ~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~ 84 (264)
T 3tfo_A 6 VILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRIDV 84 (264)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred EEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 67777865542 3334455665 899999999888777666532 24677888999875321 1247999
Q ss_pred EEecccc
Q 026558 117 VVDKGTL 123 (237)
Q Consensus 117 I~~~~~l 123 (237)
++.+..+
T Consensus 85 lVnnAG~ 91 (264)
T 3tfo_A 85 LVNNAGV 91 (264)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9987654
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=88.23 E-value=1.3 Score=37.82 Aligned_cols=97 Identities=9% Similarity=0.104 Sum_probs=56.2
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
++|+-+|+|. |......++....+|+++|+++.....+... ..+ ..++.+. -...|+|+....-.++
T Consensus 221 ktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~-----G~~--v~~Leea----l~~ADIVi~atgt~~l- 288 (435)
T 3gvp_A 221 KQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMD-----GFR--LVKLNEV----IRQVDIVITCTGNKNV- 288 (435)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT-----TCE--ECCHHHH----TTTCSEEEECSSCSCS-
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHc-----CCE--eccHHHH----HhcCCEEEECCCCccc-
Confidence 3899998887 5444444444345999999998655444422 222 2233333 2357999884211111
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchhhhhcc
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGML 168 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~ 168 (237)
+-.+.++.+|+|++++-.....+......+
T Consensus 289 -----------I~~e~l~~MK~gailINvgrg~~EId~~~L 318 (435)
T 3gvp_A 289 -----------VTREHLDRMKNSCIVCNMGHSNTEIDVASL 318 (435)
T ss_dssp -----------BCHHHHHHSCTTEEEEECSSTTTTBTGGGG
T ss_pred -----------CCHHHHHhcCCCcEEEEecCCCccCCHHHH
Confidence 223677889999988776655443333333
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.17 E-value=6.4 Score=31.00 Aligned_cols=107 Identities=14% Similarity=0.185 Sum_probs=62.7
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCC-HHHHHHHHHHcC-CCCCcEEEEccccccccc---------cCCCcc
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDIS-SVVIEAMMKKYS-NRPQLKYIKMDVRQMDEF---------QTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s-~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~---------~~~~fD 115 (237)
++|--|++.|. +...+++.|. +++.++.. +...+...+.+. ...++.++.+|+.+.... .-+..|
T Consensus 33 ~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD 111 (271)
T 3v2g_A 33 TAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALGGLD 111 (271)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCc
Confidence 78888876542 3344556665 88888654 444554444432 224678899999875321 124789
Q ss_pred EEEeccccceec-cCCCChHHH-----------HHHHHHHHHhcCCCcEEEEEE
Q 026558 116 SVVDKGTLDSLL-CGSNSRQNA-----------TQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 116 ~I~~~~~l~~~~-~~~~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+++.+....... ....+.++. ..+++.+.+.|+++|.++...
T Consensus 112 ~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~is 165 (271)
T 3v2g_A 112 ILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIG 165 (271)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 999876543210 000122222 235667778888888887764
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=88.17 E-value=2.6 Score=33.59 Aligned_cols=84 Identities=11% Similarity=0.178 Sum_probs=54.7
Q ss_pred cEEEEcc-CC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 50 RILIVGC-GN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 50 ~iLdlG~-G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
+|.-||+ |. | .+...+.+.++ +++++|.+++.++.+.+. + +.+ .+..+. -...|+|+..-.
T Consensus 13 ~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~--g---~~~--~~~~~~----~~~aDvVi~av~---- 76 (286)
T 3c24_A 13 TVAILGAGGKMGARITRKIHDSAH-HLAAIEIAPEGRDRLQGM--G---IPL--TDGDGW----IDEADVVVLALP---- 76 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSSS-EEEEECCSHHHHHHHHHT--T---CCC--CCSSGG----GGTCSEEEECSC----
T ss_pred EEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHhc--C---CCc--CCHHHH----hcCCCEEEEcCC----
Confidence 7899998 76 4 34445566666 899999999888777652 1 221 122221 246899987532
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEE
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 155 (237)
......+++++...++++.+++-
T Consensus 77 ------~~~~~~v~~~l~~~l~~~~ivv~ 99 (286)
T 3c24_A 77 ------DNIIEKVAEDIVPRVRPGTIVLI 99 (286)
T ss_dssp ------HHHHHHHHHHHGGGSCTTCEEEE
T ss_pred ------chHHHHHHHHHHHhCCCCCEEEE
Confidence 24467788888888888775543
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=88.05 E-value=2.2 Score=34.94 Aligned_cols=92 Identities=16% Similarity=0.222 Sum_probs=55.8
Q ss_pred cEEEEccCC-ch-hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcE------EEEccccccccccCCCccEEE
Q 026558 50 RILIVGCGN-SA-FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLK------YIKMDVRQMDEFQTGSFDSVV 118 (237)
Q Consensus 50 ~iLdlG~G~-G~-~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~------~~~~d~~~~~~~~~~~fD~I~ 118 (237)
+|.-+|+|. |. ++..+++.++ +|+++|.+++.++..++...- ..... ....|..+. -..+|+|+
T Consensus 6 ki~iiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~D~vi 80 (359)
T 1bg6_A 6 TYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA----VKDADVIL 80 (359)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH----HTTCSEEE
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHH----HhcCCEEE
Confidence 788899877 43 3344556666 899999999888877765310 00000 011111111 24689998
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
..-.- .....+++.+...++++..++..
T Consensus 81 ~~v~~----------~~~~~~~~~l~~~l~~~~~vv~~ 108 (359)
T 1bg6_A 81 IVVPA----------IHHASIAANIASYISEGQLIILN 108 (359)
T ss_dssp ECSCG----------GGHHHHHHHHGGGCCTTCEEEES
T ss_pred EeCCc----------hHHHHHHHHHHHhCCCCCEEEEc
Confidence 85332 33467888888889988765544
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=87.91 E-value=0.85 Score=39.25 Aligned_cols=97 Identities=11% Similarity=0.091 Sum_probs=55.4
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
++|+-+|+|. |......++....+|+++|+++.....+... .+++ .++.+.. ...|+|+....-.++
T Consensus 248 KTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~-----G~~v--v~LeElL----~~ADIVv~atgt~~l- 315 (464)
T 3n58_A 248 KVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMD-----GFEV--VTLDDAA----STADIVVTTTGNKDV- 315 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT-----TCEE--CCHHHHG----GGCSEEEECCSSSSS-
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhc-----Ccee--ccHHHHH----hhCCEEEECCCCccc-
Confidence 3888888876 4444444444345999999998654444322 2232 2333332 357998864221112
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchhhhhcc
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGML 168 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~ 168 (237)
+-.+.++.+|+|++++-............+
T Consensus 316 -----------I~~e~l~~MK~GAILINvGRgdvEID~~aL 345 (464)
T 3n58_A 316 -----------ITIDHMRKMKDMCIVGNIGHFDNEIQVAAL 345 (464)
T ss_dssp -----------BCHHHHHHSCTTEEEEECSSSTTTBTCGGG
T ss_pred -----------cCHHHHhcCCCCeEEEEcCCCCcccCHHHH
Confidence 235678889999988766544432333333
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.89 E-value=4.5 Score=31.92 Aligned_cols=73 Identities=21% Similarity=0.309 Sum_probs=48.3
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeC-------------CHHHHHHHHHHcC-CCCCcEEEEccccccccc---
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDI-------------SSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEF--- 109 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~-------------s~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~--- 109 (237)
++|--|++.|. +...+++.|. +++.+|. +++.++.+.+.+. ...++.++.+|+.+....
T Consensus 17 ~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 95 (280)
T 3pgx_A 17 VAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAALREL 95 (280)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHH
Confidence 78888865542 3344556665 9999998 6666666655543 235778899999875321
Q ss_pred ------cCCCccEEEecccc
Q 026558 110 ------QTGSFDSVVDKGTL 123 (237)
Q Consensus 110 ------~~~~fD~I~~~~~l 123 (237)
.-+..|+++.+...
T Consensus 96 ~~~~~~~~g~id~lvnnAg~ 115 (280)
T 3pgx_A 96 VADGMEQFGRLDVVVANAGV 115 (280)
T ss_dssp HHHHHHHHCCCCEEEECCCC
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 12479999988654
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.81 E-value=4.7 Score=31.46 Aligned_cols=72 Identities=14% Similarity=0.264 Sum_probs=48.1
Q ss_pred cEEEEccCCchhHH----HHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccc---------cCCCcc
Q 026558 50 RILIVGCGNSAFSE----GMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~~~~----~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD 115 (237)
++|-.|++.| ++. .+++.|. +++.++.++..++.+.+.+.. ..++.++.+|+.+.... .-+..|
T Consensus 9 ~vlVTGas~g-IG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id 86 (262)
T 1zem_A 9 VCLVTGAGGN-IGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKID 86 (262)
T ss_dssp EEEEETTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred EEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 7888886544 444 4455665 899999998877766555432 24678889999775321 124789
Q ss_pred EEEecccc
Q 026558 116 SVVDKGTL 123 (237)
Q Consensus 116 ~I~~~~~l 123 (237)
+++.+...
T Consensus 87 ~lv~nAg~ 94 (262)
T 1zem_A 87 FLFNNAGY 94 (262)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99987654
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=87.57 E-value=6.7 Score=31.30 Aligned_cols=73 Identities=19% Similarity=0.380 Sum_probs=47.7
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCC------------HHHHHHHHHHcC-CCCCcEEEEccccccccc----
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDIS------------SVVIEAMMKKYS-NRPQLKYIKMDVRQMDEF---- 109 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s------------~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~---- 109 (237)
.+|--|++.|. +...+++.|. +++.+|.+ ++.++.+.+.+. ...++.++.+|+.+....
T Consensus 30 ~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 108 (299)
T 3t7c_A 30 VAFITGAARGQGRSHAITLAREGA-DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQAAV 108 (299)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC-EEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHH
Confidence 78888876552 3344556665 99999987 555555544442 225788999999875421
Q ss_pred -----cCCCccEEEecccc
Q 026558 110 -----QTGSFDSVVDKGTL 123 (237)
Q Consensus 110 -----~~~~fD~I~~~~~l 123 (237)
.-+..|+++.+...
T Consensus 109 ~~~~~~~g~iD~lv~nAg~ 127 (299)
T 3t7c_A 109 DDGVTQLGRLDIVLANAAL 127 (299)
T ss_dssp HHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHhCCCCEEEECCCC
Confidence 12579999987654
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=87.54 E-value=5.8 Score=34.23 Aligned_cols=96 Identities=16% Similarity=0.195 Sum_probs=58.7
Q ss_pred CcEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHH-HHHHHHc-----CCC----------CCcEEEEcccccccccc
Q 026558 49 QRILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVI-EAMMKKY-----SNR----------PQLKYIKMDVRQMDEFQ 110 (237)
Q Consensus 49 ~~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~-~~a~~~~-----~~~----------~~~~~~~~d~~~~~~~~ 110 (237)
.+|.-||+|. | .++..+++.|+ .|++.|++++.. +..++.+ .+. .++.+ ..|...
T Consensus 55 ~kVaVIGaG~MG~~IA~~la~aG~-~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~-t~dl~a----- 127 (460)
T 3k6j_A 55 NSVAIIGGGTMGKAMAICFGLAGI-ETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKI-TSDFHK----- 127 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEE-ESCGGG-----
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEE-eCCHHH-----
Confidence 4799999987 3 55666777777 999999998721 1111111 110 12222 223221
Q ss_pred CCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 111 ~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
-...|+|+..-+ . .......+++++...++|+.+++..+.+
T Consensus 128 l~~aDlVIeAVp-e-------~~~vk~~v~~~l~~~~~~~aIlasnTSs 168 (460)
T 3k6j_A 128 LSNCDLIVESVI-E-------DMKLKKELFANLENICKSTCIFGTNTSS 168 (460)
T ss_dssp CTTCSEEEECCC-S-------CHHHHHHHHHHHHTTSCTTCEEEECCSS
T ss_pred HccCCEEEEcCC-C-------CHHHHHHHHHHHHhhCCCCCEEEecCCC
Confidence 246799988532 2 2256678899999999999887655543
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.44 E-value=3.6 Score=32.80 Aligned_cols=72 Identities=14% Similarity=0.281 Sum_probs=48.0
Q ss_pred cEEEEccCCchhHHHH----HHcCCCeEEEEeCCHHHHHHHHHHcC------CCCCcEEEEccccccccc----c-----
Q 026558 50 RILIVGCGNSAFSEGM----VDDGYEDVVNVDISSVVIEAMMKKYS------NRPQLKYIKMDVRQMDEF----Q----- 110 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~~~~~~a~~~~~------~~~~~~~~~~d~~~~~~~----~----- 110 (237)
+||-.|+ +|.++..+ ++.|. ++++++.++..++.+.+.+. ...++.++.+|+.+.... .
T Consensus 20 ~vlVTGa-sggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 97 (303)
T 1yxm_A 20 VAIVTGG-ATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLDT 97 (303)
T ss_dssp EEEEETT-TSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred EEEEECC-CcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 7888885 45555544 45565 89999999877766555442 124688899999775321 1
Q ss_pred CCCccEEEecccc
Q 026558 111 TGSFDSVVDKGTL 123 (237)
Q Consensus 111 ~~~fD~I~~~~~l 123 (237)
-+.+|+|+.+...
T Consensus 98 ~g~id~li~~Ag~ 110 (303)
T 1yxm_A 98 FGKINFLVNNGGG 110 (303)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 1468999987653
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=87.43 E-value=4.8 Score=32.14 Aligned_cols=107 Identities=10% Similarity=0.061 Sum_probs=61.8
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCC--HHHHHHHHHHcC-CCCCcEEEEccccccccc---------cCCCc
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDIS--SVVIEAMMKKYS-NRPQLKYIKMDVRQMDEF---------QTGSF 114 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s--~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~---------~~~~f 114 (237)
++|-.|++.|. +...+++.|. +++.++.+ +...+.+.+... ...++.++.+|+.+.... .-+..
T Consensus 51 ~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 129 (294)
T 3r3s_A 51 KALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREALGGL 129 (294)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHHTCC
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 78888865442 3334455665 89988886 333444333332 224678888899774311 12578
Q ss_pred cEEEeccccceecc--CCCChHHHH-----------HHHHHHHHhcCCCcEEEEEE
Q 026558 115 DSVVDKGTLDSLLC--GSNSRQNAT-----------QMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 115 D~I~~~~~l~~~~~--~~~~~~~~~-----------~~l~~~~~~L~pgG~l~~~~ 157 (237)
|+++.+........ ...+.++.. .+++.+...++++|.++...
T Consensus 130 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~is 185 (294)
T 3r3s_A 130 DILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTS 185 (294)
T ss_dssp CEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred CEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEEC
Confidence 99998865432100 001222222 35667777888889887765
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.38 E-value=4.9 Score=31.42 Aligned_cols=72 Identities=21% Similarity=0.311 Sum_probs=47.6
Q ss_pred cEEEEccCCchhHH----HHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccc---------cCCC
Q 026558 50 RILIVGCGNSAFSE----GMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEF---------QTGS 113 (237)
Q Consensus 50 ~iLdlG~G~G~~~~----~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~---------~~~~ 113 (237)
+||-.|++. .++. .+++.|. +|+.++.+++.++.+.+.+.. ..++.++.+|+.+.... .-+.
T Consensus 15 ~vlVTGas~-gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 92 (267)
T 1iy8_A 15 VVLITGGGS-GLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFGR 92 (267)
T ss_dssp EEEEETTTS-HHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred EEEEECCCC-HHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 788888654 4444 4455665 899999998877665544421 24678889999775321 1247
Q ss_pred ccEEEecccc
Q 026558 114 FDSVVDKGTL 123 (237)
Q Consensus 114 fD~I~~~~~l 123 (237)
.|+++.+...
T Consensus 93 id~lv~nAg~ 102 (267)
T 1iy8_A 93 IDGFFNNAGI 102 (267)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEECCCc
Confidence 8999987654
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=87.29 E-value=6.6 Score=31.25 Aligned_cols=107 Identities=14% Similarity=0.130 Sum_probs=62.2
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHH-HHHHHHHHcC-CCCCcEEEEccccccccc---------cCCCcc
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSV-VIEAMMKKYS-NRPQLKYIKMDVRQMDEF---------QTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~-~~~~a~~~~~-~~~~~~~~~~d~~~~~~~---------~~~~fD 115 (237)
+||-.|++.|. +...+++.|. +++.++.++. ..+.+.+... ...++.++.+|+.+.... .-+..|
T Consensus 49 ~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD 127 (291)
T 3ijr_A 49 NVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLGSLN 127 (291)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHSSCC
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 78888865542 3334555665 8999998764 3333333332 234788899999875321 124789
Q ss_pred EEEeccccceecc--CCCChHHHH-----------HHHHHHHHhcCCCcEEEEEE
Q 026558 116 SVVDKGTLDSLLC--GSNSRQNAT-----------QMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 116 ~I~~~~~l~~~~~--~~~~~~~~~-----------~~l~~~~~~L~pgG~l~~~~ 157 (237)
+++.+........ ...+.++.. .+++.+.+.++++|.++...
T Consensus 128 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is 182 (291)
T 3ijr_A 128 ILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA 182 (291)
T ss_dssp EEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred EEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence 9998754321100 001222222 35667777888888887754
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=87.23 E-value=5 Score=31.71 Aligned_cols=73 Identities=19% Similarity=0.376 Sum_probs=48.3
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCC----------------HHHHHHHHHHcC-CCCCcEEEEccccccccc
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDIS----------------SVVIEAMMKKYS-NRPQLKYIKMDVRQMDEF 109 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s----------------~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~ 109 (237)
++|--|++.|. +...+++.|. +++.+|.+ ++.++.+.+.+. ...++.++.+|+.+....
T Consensus 13 ~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 91 (286)
T 3uve_A 13 VAFVTGAARGQGRSHAVRLAQEGA-DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDYDAL 91 (286)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHH
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-eEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCHHHH
Confidence 78888876552 3344556665 89999987 666665555443 235788899999875321
Q ss_pred ---------cCCCccEEEecccc
Q 026558 110 ---------QTGSFDSVVDKGTL 123 (237)
Q Consensus 110 ---------~~~~fD~I~~~~~l 123 (237)
.-+..|+++.+..+
T Consensus 92 ~~~~~~~~~~~g~id~lv~nAg~ 114 (286)
T 3uve_A 92 KAAVDSGVEQLGRLDIIVANAGI 114 (286)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHhCCCCEEEECCcc
Confidence 12479999998654
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=87.21 E-value=0.25 Score=41.60 Aligned_cols=96 Identities=11% Similarity=0.154 Sum_probs=55.9
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcc---------------------cccc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD---------------------VRQM 106 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d---------------------~~~~ 106 (237)
.+|+-+|+|. |.....++.....+|+++|.++..++.+++. +.++...+ ...+
T Consensus 185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~l-----Ga~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l 259 (381)
T 3p2y_A 185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSV-----GAQWLDLGIDAAGEGGYARELSEAERAQQQQAL 259 (381)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHT-----TCEECCCC-------------CHHHHHHHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-----CCeEEeccccccccccchhhhhHHHHhhhHHHH
Confidence 3899999986 5555544443334999999999988888763 12222211 0011
Q ss_pred ccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 107 DEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 107 ~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
. -.-...|+|+..-.+. +.....-+-+++.+.++||++++-..
T Consensus 260 ~-e~l~~aDIVI~tv~iP-------g~~ap~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 260 E-DAITKFDIVITTALVP-------GRPAPRLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp H-HHHTTCSEEEECCCCT-------TSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred H-HHHhcCCEEEECCCCC-------CcccceeecHHHHhcCCCCcEEEEEe
Confidence 1 1126789999752110 00111113478899999998776544
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=87.13 E-value=3.4 Score=32.40 Aligned_cols=73 Identities=16% Similarity=0.292 Sum_probs=48.9
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--CCCcEEEEccccccccc---------cCCCcc
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEF---------QTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~---------~~~~fD 115 (237)
+||--|++.|. +...+++.|. +|+.++.++..++.+.+.+.. ..++.++.+|+.+.... .-+..|
T Consensus 22 ~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id 100 (266)
T 4egf_A 22 RALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAFGGLD 100 (266)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHHTSCS
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 77777765442 3334455665 899999998887776655421 24788999999875421 124789
Q ss_pred EEEecccc
Q 026558 116 SVVDKGTL 123 (237)
Q Consensus 116 ~I~~~~~l 123 (237)
+++.+...
T Consensus 101 ~lv~nAg~ 108 (266)
T 4egf_A 101 VLVNNAGI 108 (266)
T ss_dssp EEEEECCC
T ss_pred EEEECCCc
Confidence 99987654
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=87.11 E-value=2.4 Score=33.48 Aligned_cols=74 Identities=23% Similarity=0.368 Sum_probs=47.6
Q ss_pred cEEEEccCCc---hhHHHHHHcCCCeEEEEeCC------------HHHHHHHHHHcC-CCCCcEEEEccccccccc----
Q 026558 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDIS------------SVVIEAMMKKYS-NRPQLKYIKMDVRQMDEF---- 109 (237)
Q Consensus 50 ~iLdlG~G~G---~~~~~~~~~~~~~~~~vD~s------------~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~---- 109 (237)
+||--|++.| .+...+++.|. +++.+|.+ ++.++...+.+. ...++.++.+|+.+....
T Consensus 15 ~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 93 (278)
T 3sx2_A 15 VAFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESLSAAL 93 (278)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCC-eEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHH
Confidence 7888886554 23344556665 89999987 555555444432 124788999999875421
Q ss_pred -----cCCCccEEEeccccc
Q 026558 110 -----QTGSFDSVVDKGTLD 124 (237)
Q Consensus 110 -----~~~~fD~I~~~~~l~ 124 (237)
.-+..|+++.+..+.
T Consensus 94 ~~~~~~~g~id~lv~nAg~~ 113 (278)
T 3sx2_A 94 QAGLDELGRLDIVVANAGIA 113 (278)
T ss_dssp HHHHHHHCCCCEEEECCCCC
T ss_pred HHHHHHcCCCCEEEECCCCC
Confidence 114799999987654
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=87.06 E-value=4.9 Score=31.29 Aligned_cols=70 Identities=17% Similarity=0.299 Sum_probs=47.4
Q ss_pred cEEEEccCCchhHHH----HHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc----c-----CCCccE
Q 026558 50 RILIVGCGNSAFSEG----MVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF----Q-----TGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~----~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~----~-----~~~fD~ 116 (237)
+||-.|++ |.++.. +++.|. +|++++.++..++...+.+.. ++.++.+|+.+.... . -+..|+
T Consensus 14 ~vlVTGas-~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~--~~~~~~~D~~d~~~v~~~~~~~~~~~g~iD~ 89 (263)
T 3ak4_A 14 KAIVTGGS-KGIGAAIARALDKAGA-TVAIADLDVMAAQAVVAGLEN--GGFAVEVDVTKRASVDAAMQKAIDALGGFDL 89 (263)
T ss_dssp EEEEETTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCTT--CCEEEECCTTCHHHHHHHHHHHHHHHTCCCE
T ss_pred EEEEeCCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhc--CCeEEEEeCCCHHHHHHHHHHHHHHcCCCCE
Confidence 78888854 444444 455565 999999998877766655532 577888998764321 1 137899
Q ss_pred EEecccc
Q 026558 117 VVDKGTL 123 (237)
Q Consensus 117 I~~~~~l 123 (237)
++.+...
T Consensus 90 lv~~Ag~ 96 (263)
T 3ak4_A 90 LCANAGV 96 (263)
T ss_dssp EEECCCC
T ss_pred EEECCCc
Confidence 9987654
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.06 E-value=7.7 Score=29.99 Aligned_cols=70 Identities=16% Similarity=0.345 Sum_probs=46.9
Q ss_pred cEEEEccCCchhHHH----HHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccE
Q 026558 50 RILIVGCGNSAFSEG----MVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~----~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (237)
+||-.|++ |.++.. +++.|. +++.++.++..++...+.+. .++.++.+|+.+.... .-+..|+
T Consensus 8 ~vlVTGas-~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~ 83 (253)
T 1hxh_A 8 VALVTGGA-SGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELG--ERSMFVRHDVSSEADWTLVMAAVQRRLGTLNV 83 (253)
T ss_dssp EEEETTTT-SHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHC--TTEEEECCCTTCHHHHHHHHHHHHHHHCSCCE
T ss_pred EEEEeCCC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcC--CceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 67777754 444444 455565 89999999887776665552 4678888998775321 1246899
Q ss_pred EEecccc
Q 026558 117 VVDKGTL 123 (237)
Q Consensus 117 I~~~~~l 123 (237)
++.+...
T Consensus 84 lv~~Ag~ 90 (253)
T 1hxh_A 84 LVNNAGI 90 (253)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9987654
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.01 E-value=2.2 Score=33.94 Aligned_cols=73 Identities=11% Similarity=0.152 Sum_probs=50.1
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccc---------cCCCccE
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (237)
+||--|++.|. +...+++.|. +|+.++.++..++.+.+.+.. ..++.++.+|+.+.... .-+..|+
T Consensus 10 ~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~ 88 (280)
T 3tox_A 10 IAIVTGASSGIGRAAALLFAREGA-KVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGLDT 88 (280)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 67777765542 3344555665 899999999888887777643 34778888999775321 1247999
Q ss_pred EEecccc
Q 026558 117 VVDKGTL 123 (237)
Q Consensus 117 I~~~~~l 123 (237)
++.+...
T Consensus 89 lvnnAg~ 95 (280)
T 3tox_A 89 AFNNAGA 95 (280)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9987653
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=86.89 E-value=2.6 Score=38.30 Aligned_cols=102 Identities=13% Similarity=0.288 Sum_probs=64.7
Q ss_pred CcEEEEccCCchhHHHHHHcC-------CCeEEEEeCC-HHHHHHHHHHcCC--------------------------CC
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-------YEDVVNVDIS-SVVIEAMMKKYSN--------------------------RP 94 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-------~~~~~~vD~s-~~~~~~a~~~~~~--------------------------~~ 94 (237)
..|+-||||.=.....+.... ...+..+|++ |+.++.=++.+.. ..
T Consensus 109 ~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~ 188 (695)
T 2zwa_A 109 IVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLTTP 188 (695)
T ss_dssp EEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEECS
T ss_pred cEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhccccccccccccccccccCC
Confidence 489999999877666665441 1244455554 5555543333320 02
Q ss_pred CcEEEEcccccccc---------c-cCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 95 QLKYIKMDVRQMDE---------F-QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 95 ~~~~~~~d~~~~~~---------~-~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+..++.+|+.+... + .....=++++-.++.++ +++...++|+.+.+. ++|.+++..
T Consensus 189 ~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl-----~~~~~~~ll~~~~~~--~~~~~~~~e 254 (695)
T 2zwa_A 189 KYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYM-----KPERSDSIIEATSKM--ENSHFIILE 254 (695)
T ss_dssp SEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGS-----CHHHHHHHHHHHHTS--SSEEEEEEE
T ss_pred CeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEc-----CHHHHHHHHHHHhhC--CCceEEEEE
Confidence 56788889977421 1 23334567777888888 888999999988864 677666644
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=86.84 E-value=5.3 Score=34.03 Aligned_cols=100 Identities=19% Similarity=0.188 Sum_probs=56.4
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--C-------------CCcEEEEccccccccccCC
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--R-------------PQLKYIKMDVRQMDEFQTG 112 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~-------------~~~~~~~~d~~~~~~~~~~ 112 (237)
+|.-+|+|. | .++..+++.|+ +|+++|.+++.++..++.... . .++.+ ..|..+. -.
T Consensus 2 kI~VIG~G~vG~~~A~~la~~G~-~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~-t~~~~~~----~~ 75 (436)
T 1mv8_A 2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSG-TTDFKKA----VL 75 (436)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHH----HH
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEE-eCCHHHH----hc
Confidence 567788887 4 34455667776 899999999988877653210 0 11211 1122111 13
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCC---CcEEEE
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKD---KGVYIL 155 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~l~~ 155 (237)
..|+|+..-.-..-..+..+.......++.+...|++ +.+++.
T Consensus 76 ~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~ 121 (436)
T 1mv8_A 76 DSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVV 121 (436)
T ss_dssp TCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEE
T ss_pred cCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEE
Confidence 5788887532111000111223367788889999998 655544
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=86.72 E-value=0.31 Score=41.41 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=31.0
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKK 89 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~ 89 (237)
.+|+-+|+|. |.....++.....+|+++|.++..++.+++.
T Consensus 191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~ 232 (405)
T 4dio_A 191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASL 232 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHT
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHc
Confidence 3899999986 5555555554445999999999988888763
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=86.70 E-value=5.5 Score=32.27 Aligned_cols=96 Identities=9% Similarity=0.097 Sum_probs=59.2
Q ss_pred CcEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--CCCcEEEE-ccc-cccccccCCCccEEEeccc
Q 026558 49 QRILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIK-MDV-RQMDEFQTGSFDSVVDKGT 122 (237)
Q Consensus 49 ~~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~~~~~~~~-~d~-~~~~~~~~~~fD~I~~~~~ 122 (237)
.+|.-+|+|. | .++..+++.++ +|+.+ .+++.++..++.-.. .+...+.. ..+ .+.. ....+|+|+..-.
T Consensus 20 ~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~D~vilavk 95 (318)
T 3hwr_A 20 MKVAIMGAGAVGCYYGGMLARAGH-EVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPS--AVQGADLVLFCVK 95 (318)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTC-EEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGG--GGTTCSEEEECCC
T ss_pred CcEEEECcCHHHHHHHHHHHHCCC-eEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHH--HcCCCCEEEEEcc
Confidence 3899999987 4 44455666666 89999 888888877765210 11111110 001 1111 1256899987532
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
- .+...+++.+...++++..++....
T Consensus 96 ~----------~~~~~~l~~l~~~l~~~~~iv~~~n 121 (318)
T 3hwr_A 96 S----------TDTQSAALAMKPALAKSALVLSLQN 121 (318)
T ss_dssp G----------GGHHHHHHHHTTTSCTTCEEEEECS
T ss_pred c----------ccHHHHHHHHHHhcCCCCEEEEeCC
Confidence 2 3567888999999999887766553
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=86.53 E-value=4.7 Score=34.91 Aligned_cols=105 Identities=17% Similarity=0.176 Sum_probs=62.1
Q ss_pred CCCcEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--CCC-------------cEEEEccccccccc
Q 026558 47 HHQRILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQ-------------LKYIKMDVRQMDEF 109 (237)
Q Consensus 47 ~~~~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~~~-------------~~~~~~d~~~~~~~ 109 (237)
+..+|.-+|+|. | .++..+++.|+ +|+++|++++.++.+++.... .+. +.+ ..|..+.
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~G~-~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~-ttd~~~a--- 81 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADIGH-DVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRF-STDIEAA--- 81 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ECCHHHH---
T ss_pred CCceEEEECcCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEE-ECCHHHH---
Confidence 334899999987 4 34456677777 999999999998888765311 011 111 1121111
Q ss_pred cCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 110 QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 110 ~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
-...|+|+..-.--.-..+.........+++.+...|++|.+++..+
T Consensus 82 -~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~S 128 (478)
T 2y0c_A 82 -VAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKS 128 (478)
T ss_dssp -HHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred -hhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 12468888752210000011123677888899999999987665443
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.52 E-value=5.8 Score=31.19 Aligned_cols=73 Identities=21% Similarity=0.369 Sum_probs=47.7
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeC-------------CHHHHHHHHHHcC-CCCCcEEEEccccccccc---
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDI-------------SSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEF--- 109 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~-------------s~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~--- 109 (237)
++|--|++.|. +...+++.|. +++.+|. ++..++.+.+... ....+.++.+|+.+....
T Consensus 13 ~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~ 91 (277)
T 3tsc_A 13 VAFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRLRKV 91 (277)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHH
T ss_pred EEEEECCccHHHHHHHHHHHHcCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 78888865542 3344556665 9999998 5666665554442 235788899999875421
Q ss_pred -c-----CCCccEEEecccc
Q 026558 110 -Q-----TGSFDSVVDKGTL 123 (237)
Q Consensus 110 -~-----~~~fD~I~~~~~l 123 (237)
. -+..|+++.+..+
T Consensus 92 ~~~~~~~~g~id~lvnnAg~ 111 (277)
T 3tsc_A 92 VDDGVAALGRLDIIVANAGV 111 (277)
T ss_dssp HHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 1 2579999998654
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=86.46 E-value=2.7 Score=33.75 Aligned_cols=92 Identities=14% Similarity=0.089 Sum_probs=60.1
Q ss_pred cEEEEccCC-ch-hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 50 RILIVGCGN-SA-FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 50 ~iLdlG~G~-G~-~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
+|.-||+|. |. +...+++.++ +|++.|.+++.++.+.+. ++.+ ..+..+.. . .|+|+..-+
T Consensus 17 ~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~~~~~-----g~~~-~~~~~~~~----~-aDvvi~~vp----- 79 (296)
T 3qha_A 17 KLGYIGLGNMGAPMATRMTEWPG-GVTVYDIRIEAMTPLAEA-----GATL-ADSVADVA----A-ADLIHITVL----- 79 (296)
T ss_dssp CEEEECCSTTHHHHHHHHTTSTT-CEEEECSSTTTSHHHHHT-----TCEE-CSSHHHHT----T-SSEEEECCS-----
T ss_pred eEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHC-----CCEE-cCCHHHHH----h-CCEEEEECC-----
Confidence 789999887 43 4455666666 899999999887777654 2222 12223322 3 899987432
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCch
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 162 (237)
.......+++.+...+++|.+++-.+-..+.
T Consensus 80 ----~~~~~~~v~~~l~~~l~~g~ivv~~st~~~~ 110 (296)
T 3qha_A 80 ----DDAQVREVVGELAGHAKPGTVIAIHSTISDT 110 (296)
T ss_dssp ----SHHHHHHHHHHHHTTCCTTCEEEECSCCCHH
T ss_pred ----ChHHHHHHHHHHHHhcCCCCEEEEeCCCCHH
Confidence 2355677888899999988777655444443
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=86.42 E-value=4.7 Score=27.78 Aligned_cols=90 Identities=16% Similarity=0.220 Sum_probs=50.1
Q ss_pred cEEEEccCCchhHHHH----HHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---cCCCccEEEeccc
Q 026558 50 RILIVGCGNSAFSEGM----VDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---QTGSFDSVVDKGT 122 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---~~~~fD~I~~~~~ 122 (237)
+|+-+|+| ..+..+ .+.+. +++++|.++..++.+++. ...++.+|..+...+ .-..+|+|+....
T Consensus 8 ~v~I~G~G--~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~-----~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~ 79 (144)
T 2hmt_A 8 QFAVIGLG--RFGGSIVKELHRMGH-EVLAVDINEEKVNAYASY-----ATHAVIANATEENELLSLGIRNFEYVIVAIG 79 (144)
T ss_dssp SEEEECCS--HHHHHHHHHHHHTTC-CCEEEESCHHHHHTTTTT-----CSEEEECCTTCHHHHHTTTGGGCSEEEECCC
T ss_pred cEEEECCC--HHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHh-----CCEEEEeCCCCHHHHHhcCCCCCCEEEECCC
Confidence 79999974 444443 33454 899999998765543322 345677777553211 1346899987533
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
-. ......+....+.+.+. .++...
T Consensus 80 ~~---------~~~~~~~~~~~~~~~~~-~ii~~~ 104 (144)
T 2hmt_A 80 AN---------IQASTLTTLLLKELDIP-NIWVKA 104 (144)
T ss_dssp SC---------HHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred Cc---------hHHHHHHHHHHHHcCCC-eEEEEe
Confidence 11 12222344455556665 554433
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=86.31 E-value=5 Score=31.44 Aligned_cols=70 Identities=20% Similarity=0.323 Sum_probs=48.7
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccEE
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDSV 117 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~I 117 (237)
+||--|++.|. ....+++.|. +|+.+|.+++.++...+.. +++.++++|+.+.... .-++.|++
T Consensus 4 ~vlVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiL 79 (247)
T 3ged_A 4 GVIVTGGGHGIGKQICLDFLEAGD-KVCFIDIDEKRSADFAKER---PNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVL 79 (247)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTC---TTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred EEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhc---CCEEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 67777776653 3445566775 9999999988776655443 5788899999874321 12679999
Q ss_pred Eecccc
Q 026558 118 VDKGTL 123 (237)
Q Consensus 118 ~~~~~l 123 (237)
+.+...
T Consensus 80 VNNAG~ 85 (247)
T 3ged_A 80 VNNACR 85 (247)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 987643
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=86.27 E-value=3.4 Score=34.65 Aligned_cols=107 Identities=17% Similarity=0.100 Sum_probs=66.3
Q ss_pred ChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCc
Q 026558 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSF 114 (237)
Q Consensus 35 ~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~f 114 (237)
...+++.....+...+||.++.+.|.++..+... .+++.+.-|-...+..+.+- -.+.. .+ ... .....|
T Consensus 33 ~~~~~l~~~~~~~~~~~l~~n~~~g~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~---~~~~~--~~--~~~-~~~~~~ 102 (381)
T 3dmg_A 33 PVHDLLQKTVEPFGERALDLNPGVGWGSLPLEGR--MAVERLETSRAAFRCLTASG---LQARL--AL--PWE-AAAGAY 102 (381)
T ss_dssp HHHHHHHTTCCCCSSEEEESSCTTSTTTGGGBTT--BEEEEEECBHHHHHHHHHTT---CCCEE--CC--GGG-SCTTCE
T ss_pred hHHHHHHHHHHHhCCcEEEecCCCCccccccCCC--CceEEEeCcHHHHHHHHHcC---CCccc--cC--Ccc-CCcCCC
Confidence 4556666665555459999999999887766533 26677655555544444332 11111 11 121 235789
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
|+|+...+=+ .+.......|.++.+.|+|||.+++.-
T Consensus 103 d~v~~~~Pk~------k~~~~~~~~l~~~~~~l~~g~~i~~~g 139 (381)
T 3dmg_A 103 DLVVLALPAG------RGTAYVQASLVAAARALRMGGRLYLAG 139 (381)
T ss_dssp EEEEEECCGG------GCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CEEEEECCcc------hhHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 9998753311 011456788999999999999998765
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=86.26 E-value=6.6 Score=30.47 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=47.0
Q ss_pred cEEEEccCCchhHHHH----HHcCCCeEEEEeCCHHHHHHHHHHcC-CCCCcEEEEcccccccc----cc------CCCc
Q 026558 50 RILIVGCGNSAFSEGM----VDDGYEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDE----FQ------TGSF 114 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~----~~------~~~f 114 (237)
+||-.|+ +|.++..+ ++.|. ++++++.++..++.+.+.+. ...++.++.+|+.+... +. .+..
T Consensus 16 ~vlITGa-sggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~i 93 (266)
T 1xq1_A 16 TVLVTGG-TKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKL 93 (266)
T ss_dssp EEEETTT-TSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEECC-CCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 7787775 55555444 45565 89999999877766555442 12467888899876431 11 1678
Q ss_pred cEEEecccc
Q 026558 115 DSVVDKGTL 123 (237)
Q Consensus 115 D~I~~~~~l 123 (237)
|+|+.+...
T Consensus 94 d~li~~Ag~ 102 (266)
T 1xq1_A 94 DILINNLGA 102 (266)
T ss_dssp SEEEEECCC
T ss_pred cEEEECCCC
Confidence 999987654
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=86.24 E-value=5.8 Score=30.94 Aligned_cols=104 Identities=16% Similarity=0.171 Sum_probs=58.0
Q ss_pred cEEEEccCC-chhHHH----HHHcCCCeEEEEeCCH---HHHHHHHHHcCCCCCcEEEEccccccccc---------cCC
Q 026558 50 RILIVGCGN-SAFSEG----MVDDGYEDVVNVDISS---VVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTG 112 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~----~~~~~~~~~~~vD~s~---~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~ 112 (237)
+||-.|++. |.++.. +++.|. +|+.++.++ ..++...+.. +...++.+|+.+.... .-+
T Consensus 11 ~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~~g 86 (265)
T 1qsg_A 11 RILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQL---GSDIVLQCDVAEDASIDTMFAELGKVWP 86 (265)
T ss_dssp EEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHHhc---CCcEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 788888651 444444 455565 899999887 3333333332 2347888898764311 124
Q ss_pred CccEEEeccccceec---c--CC-CChHHHH-----------HHHHHHHHhcCCCcEEEEEE
Q 026558 113 SFDSVVDKGTLDSLL---C--GS-NSRQNAT-----------QMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~---~--~~-~~~~~~~-----------~~l~~~~~~L~pgG~l~~~~ 157 (237)
..|+++.+....... . .. .+.++.. .+++.+.+.++++|.++..+
T Consensus 87 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 148 (265)
T 1qsg_A 87 KFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLS 148 (265)
T ss_dssp SEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEc
Confidence 789999876543210 0 00 1222222 24455666666678877765
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=86.21 E-value=8.9 Score=29.81 Aligned_cols=72 Identities=17% Similarity=0.277 Sum_probs=47.1
Q ss_pred cEEEEccCCchhHH----HHHHcCCCeEEEE-eCCHHHHHHHHHHcCC-CCCcEEEEccccccccc---------cCCCc
Q 026558 50 RILIVGCGNSAFSE----GMVDDGYEDVVNV-DISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSF 114 (237)
Q Consensus 50 ~iLdlG~G~G~~~~----~~~~~~~~~~~~v-D~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~f 114 (237)
+||--|++. .++. .+++.|. +++.+ +.++..++.+.+.+.. ..++.++.+|+.+.... .-+..
T Consensus 6 ~vlVTGas~-gIG~aia~~l~~~G~-~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 83 (258)
T 3oid_A 6 CALVTGSSR-GVGKAAAIRLAENGY-NIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFGRL 83 (258)
T ss_dssp EEEESSCSS-HHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred EEEEecCCc-hHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 677777554 4444 4455665 77775 8888777776665532 34788899999875321 12478
Q ss_pred cEEEecccc
Q 026558 115 DSVVDKGTL 123 (237)
Q Consensus 115 D~I~~~~~l 123 (237)
|+++.+...
T Consensus 84 d~lv~nAg~ 92 (258)
T 3oid_A 84 DVFVNNAAS 92 (258)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 999988653
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=86.19 E-value=3.7 Score=34.05 Aligned_cols=93 Identities=15% Similarity=0.153 Sum_probs=59.7
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcEE-----EEccccccccccCCCccEEEe
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKY-----IKMDVRQMDEFQTGSFDSVVD 119 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~-----~~~d~~~~~~~~~~~fD~I~~ 119 (237)
+|.-||+|. | .++..+++.++ +|+..|.+++.++..++.... .+++.+ ...|..+. -...|+|+.
T Consensus 31 kI~VIGaG~mG~alA~~La~~G~-~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea----~~~aDvVil 105 (356)
T 3k96_A 31 PIAILGAGSWGTALALVLARKGQ-KVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKAS----LEGVTDILI 105 (356)
T ss_dssp CEEEECCSHHHHHHHHHHHTTTC-CEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHH----HTTCCEEEE
T ss_pred eEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHH----HhcCCEEEE
Confidence 799999887 4 34455566666 899999999988887775321 112211 11122111 145799987
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.- +......+++++...++++..++..+
T Consensus 106 aV----------p~~~~~~vl~~i~~~l~~~~ivvs~~ 133 (356)
T 3k96_A 106 VV----------PSFAFHEVITRMKPLIDAKTRIAWGT 133 (356)
T ss_dssp CC----------CHHHHHHHHHHHGGGCCTTCEEEECC
T ss_pred CC----------CHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 42 23567888999999999887766543
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=86.13 E-value=6.4 Score=30.97 Aligned_cols=72 Identities=10% Similarity=0.224 Sum_probs=48.1
Q ss_pred cEEEEccCCchhHH----HHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccc---------cCCCcc
Q 026558 50 RILIVGCGNSAFSE----GMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~~~~----~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD 115 (237)
++|--|++. .++. .+++.|. +|++++.++..++.+.+.+.. ..++.++.+|+.+.... .-+..|
T Consensus 30 ~~lVTGas~-GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD 107 (270)
T 3ftp_A 30 VAIVTGASR-GIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGALN 107 (270)
T ss_dssp EEEETTCSS-HHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred EEEEECCCC-HHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcCCCC
Confidence 677777544 4443 4555665 999999998877766655431 24678888999775321 124789
Q ss_pred EEEecccc
Q 026558 116 SVVDKGTL 123 (237)
Q Consensus 116 ~I~~~~~l 123 (237)
+++.+..+
T Consensus 108 ~lvnnAg~ 115 (270)
T 3ftp_A 108 VLVNNAGI 115 (270)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99988654
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=86.04 E-value=9.9 Score=30.63 Aligned_cols=73 Identities=18% Similarity=0.346 Sum_probs=46.2
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCC------------HHHHHHHHHHcC-CCCCcEEEEccccccccc----
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDIS------------SVVIEAMMKKYS-NRPQLKYIKMDVRQMDEF---- 109 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s------------~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~---- 109 (237)
+||--|++.|. +...+++.|. +++.+|.+ ++.++.+.+.+. ...++.++.+|+.+....
T Consensus 48 ~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 126 (317)
T 3oec_A 48 VAFITGAARGQGRTHAVRLAQDGA-DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQAVV 126 (317)
T ss_dssp EEEESSCSSHHHHHHHHHHHHTTC-EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 67777765542 3344555665 99999886 555555444332 224788899999875321
Q ss_pred -----cCCCccEEEecccc
Q 026558 110 -----QTGSFDSVVDKGTL 123 (237)
Q Consensus 110 -----~~~~fD~I~~~~~l 123 (237)
.-+..|+++.+..+
T Consensus 127 ~~~~~~~g~iD~lVnnAg~ 145 (317)
T 3oec_A 127 DEALAEFGHIDILVSNVGI 145 (317)
T ss_dssp HHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 12479999998654
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=85.91 E-value=3.7 Score=32.31 Aligned_cols=107 Identities=17% Similarity=0.208 Sum_probs=62.2
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEE-eCCHHHHHHHHHHcC-CCCCcEEEEccccccccc---------cCCCcc
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNV-DISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEF---------QTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~v-D~s~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~---------~~~~fD 115 (237)
++|--|++.|. +...+++.|. +++.+ ..++...+...+.+. ...++.++.+|+.+.... .-+..|
T Consensus 29 ~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD 107 (267)
T 3u5t_A 29 VAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAFGGVD 107 (267)
T ss_dssp EEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 78888865552 3344556675 77776 445555555544432 224678889999875421 124789
Q ss_pred EEEeccccceec-cCCCChHHHH-----------HHHHHHHHhcCCCcEEEEEE
Q 026558 116 SVVDKGTLDSLL-CGSNSRQNAT-----------QMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 116 ~I~~~~~l~~~~-~~~~~~~~~~-----------~~l~~~~~~L~pgG~l~~~~ 157 (237)
+++.+..+.... ....+.+... .+++.+.+.++++|.++..+
T Consensus 108 ~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 161 (267)
T 3u5t_A 108 VLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMS 161 (267)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 999886543210 0011222222 35667777788888887765
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=85.86 E-value=0.44 Score=38.32 Aligned_cols=63 Identities=11% Similarity=0.157 Sum_probs=39.6
Q ss_pred CcEEE-EccccccccccCCCccEEEeccccceeccCCC-C-----hHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 95 QLKYI-KMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSN-S-----RQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 95 ~~~~~-~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~-~-----~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
...+. .+|+.... ..+++|+|+++...... ++. . .....-+++.+.++|+|||.+++-.++..
T Consensus 189 GAt~~~~lDfg~p~--~~~k~DvV~SDMApn~s--Gh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~Kvygga 258 (320)
T 2hwk_A 189 EATFRARLDLGIPG--DVPKYDIIFVNVRTPYK--YHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYA 258 (320)
T ss_dssp TCSEECCGGGCSCT--TSCCEEEEEEECCCCCC--SCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCC
T ss_pred CceeecccccCCcc--ccCcCCEEEEcCCCCCC--CccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence 44444 56665554 23779999998654322 111 0 01122257778899999999999888765
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=85.74 E-value=6.6 Score=30.35 Aligned_cols=71 Identities=18% Similarity=0.288 Sum_probs=48.0
Q ss_pred cEEEEccCCc---hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccEE
Q 026558 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDSV 117 (237)
Q Consensus 50 ~iLdlG~G~G---~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~I 117 (237)
++|--|++.| .+...+++.|. +++.++.++..++...+.+. ....++.+|+.+.... .-+..|++
T Consensus 11 ~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l 87 (248)
T 3op4_A 11 VALVTGASRGIGKAIAELLAERGA-KVIGTATSESGAQAISDYLG--DNGKGMALNVTNPESIEAVLKAITDEFGGVDIL 87 (248)
T ss_dssp EEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHG--GGEEEEECCTTCHHHHHHHHHHHHHHHCCCSEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--ccceEEEEeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 7777776554 23344555665 99999999988877766653 2467888899775421 12479999
Q ss_pred Eecccc
Q 026558 118 VDKGTL 123 (237)
Q Consensus 118 ~~~~~l 123 (237)
+.+..+
T Consensus 88 v~nAg~ 93 (248)
T 3op4_A 88 VNNAGI 93 (248)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 998654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 237 | ||||
| d2bzga1 | 229 | c.66.1.36 (A:17-245) Thiopurine S-methyltransferas | 3e-11 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 1e-08 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 3e-08 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 8e-07 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 1e-06 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 2e-06 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 1e-05 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 3e-05 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 4e-05 | |
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 5e-05 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 2e-04 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 2e-04 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 3e-04 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 4e-04 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 7e-04 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 0.002 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 0.002 |
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.2 bits (142), Expect = 3e-11
Identities = 22/167 (13%), Positives = 51/167 (30%), Gaps = 16/167 (9%)
Query: 15 YWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSH-HQRILIVGCGNSAFSEGMVDDGYEDV 73
W +++ + F Q + L + ++ R+ CG + + D G+ V
Sbjct: 12 EWQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH-SV 70
Query: 74 VNVDISSVVIEAMMKKYSNRPQLKYI--------------KMDVRQMDEFQTGSFDSVVD 119
V V+IS + I+ + + + I + + F +
Sbjct: 71 VGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKF 130
Query: 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLG 166
D + + + ++ +L K Y+L +
Sbjct: 131 DMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHP 177
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.3 bits (124), Expect = 1e-08
Identities = 20/152 (13%), Positives = 50/152 (32%), Gaps = 13/152 (8%)
Query: 15 YWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVV 74
W Y+ + L+ L R+L V CG S +V++G+
Sbjct: 29 VWQLYIGDTRSRTAEYKAW-----LLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTS 83
Query: 75 NVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD--------EFQTGSFDSVVDKGTLDSL 126
++ A+ ++++ R + + K + + + G + + L
Sbjct: 84 VDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHL 143
Query: 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158
+ LK + +++ G+ ++
Sbjct: 144 PDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 50.0 bits (118), Expect = 3e-08
Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 16/144 (11%)
Query: 15 YWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVV 74
Y+ +Y D +AP R L +GCGN S + +GY+
Sbjct: 8 YFTEKYGLTRTHSDVLAAAKVVAP----------GRTLDLGCGNGRNSLYLAANGYDVTA 57
Query: 75 NVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQ 134
D + + + + + V G +D ++ + L Q
Sbjct: 58 W-DKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFL-----EAQ 111
Query: 135 NATQMLKEVWRVLKDKGVYILVTY 158
++ + R K G ++V
Sbjct: 112 TIPGLIANMQRCTKPGGYNLIVAA 135
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 46.1 bits (108), Expect = 8e-07
Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 7/129 (5%)
Query: 33 YPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN 92
+ SL +IK R+L +G G + E + VD + E + S
Sbjct: 2 HHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQE-CIGVDATK---EMVEVASSF 57
Query: 93 RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGV 152
+ + +Q D D T + + + ++EV RVLK G
Sbjct: 58 AQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVR---KAVREVARVLKQDGR 114
Query: 153 YILVTYGAP 161
++LV + AP
Sbjct: 115 FLLVDHYAP 123
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 45.9 bits (107), Expect = 1e-06
Identities = 27/182 (14%), Positives = 62/182 (34%), Gaps = 11/182 (6%)
Query: 15 YWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVV 74
Y+D Y + + + K +R+L + CG + + + GYE
Sbjct: 11 YYDTIYRRRIERVKAEIDF--VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYE--- 65
Query: 75 NVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQ 134
+ + + M + + R + + +F + D T+ +
Sbjct: 66 ---VVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEE 122
Query: 135 NATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVIEKLVVEEKSGHPI 194
+ ++ +V LK GV+I P + G WN + + ++++ + P
Sbjct: 123 DLRKLFSKVAEALKPGGVFITDF---PCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPA 179
Query: 195 WE 196
+
Sbjct: 180 VQ 181
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 44.9 bits (105), Expect = 2e-06
Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 1/120 (0%)
Query: 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKY 98
LI+LY +L +GCG G + VDI+ V I + N +
Sbjct: 17 LIRLYTKRG-DSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFK 75
Query: 99 IKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158
+ + + S ++ ++ + + R L+ G +I+
Sbjct: 76 VFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 43.0 bits (100), Expect = 1e-05
Identities = 35/201 (17%), Positives = 64/201 (31%), Gaps = 25/201 (12%)
Query: 19 RYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYE-DVVNVD 77
R ++G + + + ++ + +L +GCG ++ D E +D
Sbjct: 58 RAFLDAGHYQPLRDA--IVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLD 115
Query: 78 ISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNAT 137
+ + +K + R + F S D+++
Sbjct: 116 V----SKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP-------------- 157
Query: 138 QMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVIEKLVVEEKSGHPIWEL 197
+E+ RV+K G I T G L L+ + LH +E + EL
Sbjct: 158 CKAEELARVVKPGGWVITATPGP--RHLMELKGLIYNEVHLHAPHAEQLEGFTLQQSAEL 215
Query: 198 TNPVPLENDGRSVEELLGKNP 218
P+ L D LL P
Sbjct: 216 CYPMRLRGD--EAVALLQMTP 234
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 3e-05
Identities = 31/252 (12%), Positives = 62/252 (24%), Gaps = 50/252 (19%)
Query: 15 YWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSH---HQRILIVGCGNSAFSEGMVDDGYE 71
Y Y+ + P + + ++ +G G + + D ++
Sbjct: 16 YLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQ 75
Query: 72 DVVNVDISSVVIEAMMKKYSNRP---QLKYIKMDVRQM---------------------- 106
D+ D + E + K P ++
Sbjct: 76 DITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVL 135
Query: 107 ----------DEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156
D V+ ++ C S L + +LK G +
Sbjct: 136 KCDVHLGNPLAPAVLPLADCVLTLLAMECACC---SLDAYRAALCNLASLLKPGGHLVTT 192
Query: 157 TYGAPIYRLGMLRDSCSWNIKLHVIEKLVVEEKSGHPIWELTNPVPLENDGRSVEELLGK 216
+ R+ ++ +E+ V +G I L + +S
Sbjct: 193 VTLRLPSYMVGKREFSCVALEKGEVEQAV--LDAGFDI------EQLLHSPQSYSVTNAA 244
Query: 217 NPDVHYIYVCTK 228
N V I V K
Sbjct: 245 NNGVCCI-VARK 255
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 41.2 bits (95), Expect = 4e-05
Identities = 22/126 (17%), Positives = 43/126 (34%), Gaps = 7/126 (5%)
Query: 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQ 95
LA L+++ ++ +L V G + + VV D++ +++
Sbjct: 4 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKK-VVAFDLTEDILKVARAFIEGNGH 62
Query: 96 LKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155
+ + T +V ++ N + E +RVLK G +L
Sbjct: 63 QQVEYVQGDAEQMPFTDERFHIVTCR------IAAHHFPNPASFVSEAYRVLKKGGQLLL 116
Query: 156 VTYGAP 161
V AP
Sbjct: 117 VDNSAP 122
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 41.1 bits (95), Expect = 5e-05
Identities = 17/111 (15%), Positives = 32/111 (28%), Gaps = 6/111 (5%)
Query: 2 TMGTTTQAYGE-PWYWDNRYAHESGPFDWYQKYPSL-----APLIKLYVPSHHQRILIVG 55
YG+ YW A SG + I R L G
Sbjct: 42 LYDPEKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCG 101
Query: 56 CGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM 106
G ++ ++ Y ++ ++E ++ + P K+I +
Sbjct: 102 AGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETA 152
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (91), Expect = 2e-04
Identities = 27/192 (14%), Positives = 60/192 (31%), Gaps = 14/192 (7%)
Query: 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE 108
+ +L VGCG S G + V+ VD S ++ +AM N+ + + +
Sbjct: 37 KVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNK---LEDTITLIKGKI 93
Query: 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL---VTYGAPIYRL 165
+ VD + + +L + L G + +
Sbjct: 94 EEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDV 153
Query: 166 GMLRDSCSW-----NIKLHVIEKLVVEE---KSGHPIWELTNPVPLENDGRSVEELLGKN 217
D ++ K+ ++K V+ E + P ++ P +++ +
Sbjct: 154 NKHADRIAFWDDVYGFKMSCMKKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTTSISDLE 213
Query: 218 PDVHYIYVCTKD 229
+ T+
Sbjct: 214 FSSDFTLKITRT 225
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.4 bits (91), Expect = 2e-04
Identities = 26/197 (13%), Positives = 59/197 (29%), Gaps = 18/197 (9%)
Query: 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQM 106
+ +L VG G G V+ ++ SS+ A+ +N + IK V ++
Sbjct: 35 KVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV 94
Query: 107 DEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYI---LVTYGAPIY 163
+ D ++ + L +L + L G+ Y I
Sbjct: 95 ELPVE-KVDIIISEWMGYCL----FYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIE 149
Query: 164 RLGMLRDSCSW-----NIKLHVIEKLVVEE---KSGHPIWELTNPVPLENDGRSVEELLG 215
W + I+ + ++E P +TN ++ ++
Sbjct: 150 DRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVED 209
Query: 216 KNPDVHYIYVCTKDESL 232
+ +++ +
Sbjct: 210 LTFTSPFCLQVKRNDYV 226
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 38.5 bits (88), Expect = 3e-04
Identities = 21/142 (14%), Positives = 46/142 (32%), Gaps = 14/142 (9%)
Query: 38 PLIKLYVPSHH----QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR 93
++ Y S + R+L+ CG S + GY VV ++S +E + +
Sbjct: 7 KDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQ 65
Query: 94 PQL---------KYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVW 144
P + +++ D F + D D + + ++ +
Sbjct: 66 PHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLE 125
Query: 145 RVLKDKGVYILVTYGAPIYRLG 166
++ +L+T L
Sbjct: 126 ALMPQACSGLLITLEYDQALLE 147
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 38.4 bits (88), Expect = 4e-04
Identities = 16/126 (12%), Positives = 34/126 (26%), Gaps = 8/126 (6%)
Query: 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQ 95
A L ++ RIL +G G+ D +D+SS+ ++
Sbjct: 22 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV 81
Query: 96 LKYIKMDVRQMDEFQ-TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYI 154
+ + + D G + + + LK G+ +
Sbjct: 82 SERVHFIHNDAAGYVANEKCDVAACVGATWIA-------GGFAGAEELLAQSLKPGGIML 134
Query: 155 LVTYGA 160
+
Sbjct: 135 IGEPYW 140
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 37.6 bits (86), Expect = 7e-04
Identities = 18/141 (12%), Positives = 38/141 (26%), Gaps = 11/141 (7%)
Query: 20 YAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYE--DVVNVD 77
Y + + Y S + ++ + I+ GCG ++ E +D
Sbjct: 1 YLKNTRDLYYNDDYVSFL-VNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGID 59
Query: 78 ISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNAT 137
++ + + P E +D + L
Sbjct: 60 SGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAFL-------LHMTTPE 111
Query: 138 QMLKEVWRVLKDKGVYILVTY 158
ML+++ +K G I
Sbjct: 112 TMLQKMIHSVKKGGKIICFEP 132
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 36.6 bits (83), Expect = 0.002
Identities = 18/132 (13%), Positives = 37/132 (28%), Gaps = 8/132 (6%)
Query: 27 FDWYQKYPSLAPLIKLYVPSHH---QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVI 83
Y + I ++ L + CG +E + ++
Sbjct: 14 IRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLS 73
Query: 84 EAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEV 143
EA K S + + D+ ++ + + + + K V
Sbjct: 74 EAENKFRSQGLKPRLACQDISNLNINRKFDLITC-----CLDSTNYIIDSDDLKKYFKAV 128
Query: 144 WRVLKDKGVYIL 155
LK+ GV+I
Sbjct: 129 SNHLKEGGVFIF 140
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.1 bits (82), Expect = 0.002
Identities = 17/161 (10%), Positives = 50/161 (31%), Gaps = 26/161 (16%)
Query: 15 YWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYE--- 71
+ ++ H+ +K P + + ++ +IL +G G ++
Sbjct: 10 FLNHSTEHQCMQEFMDKKLPGI--IGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYP 67
Query: 72 ----DVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM----------DEFQTGSFDSV 117
+ V+ S+ I + + L+ +K + ++ + +D +
Sbjct: 68 GVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFI 127
Query: 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158
L + ++ LK +L +++
Sbjct: 128 HMIQMLYYV-------KDIPATLKFFHSLLGTNAKMLIIVV 161
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 237 | |||
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.88 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.88 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.87 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.86 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.85 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.84 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.83 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.83 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.82 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.82 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.81 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.81 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.8 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.79 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.78 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.77 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.75 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.74 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.74 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.73 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.73 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.72 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.71 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.71 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.7 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.7 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.7 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.7 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.69 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.68 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.65 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.64 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.63 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.62 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.62 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.62 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.61 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.61 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.57 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.57 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.56 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.53 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.53 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.52 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.51 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.51 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.49 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.47 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.46 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.46 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.45 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.41 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.41 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.4 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.39 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.37 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.36 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.35 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.35 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.35 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.34 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.34 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.32 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.28 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.24 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.22 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.18 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 99.13 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 99.11 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 99.09 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.07 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.03 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.03 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 99.02 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.0 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.0 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.99 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.98 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.96 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.96 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.94 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.92 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.92 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.9 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.89 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.77 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.71 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.62 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.6 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.6 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.6 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.6 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.58 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.55 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.44 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.39 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 98.3 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.26 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.23 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 98.04 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.77 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.62 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.36 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 97.35 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 97.29 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.28 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.2 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.19 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.15 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 97.14 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.06 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.05 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 97.03 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 96.94 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.92 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 96.87 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.83 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.8 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.73 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 96.67 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.63 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.62 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.58 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 96.56 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 96.49 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.46 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.05 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 96.0 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.92 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 95.48 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.41 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.37 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.33 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.33 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 95.18 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 94.9 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 94.87 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 94.8 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 94.72 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 94.55 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 94.42 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.1 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 94.07 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 94.0 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 93.64 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 93.43 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 93.19 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 93.0 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 92.98 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 92.6 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 92.54 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 92.51 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 92.41 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 92.28 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 92.22 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 92.21 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 92.08 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 92.06 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 92.01 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 91.53 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 91.4 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 91.17 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 90.82 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 90.71 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 90.58 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 90.47 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 90.35 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 90.31 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 90.29 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 90.29 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 90.03 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 89.8 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 89.39 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 89.37 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 89.26 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 89.16 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 89.0 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 88.95 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 88.77 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 88.69 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 88.69 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 88.45 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 88.43 | |
| d2oo3a1 | 271 | Uncharacterized protein LPG1296 {Legionella pneumo | 88.35 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 87.76 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 87.68 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 87.28 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 87.1 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 86.87 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 86.86 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 86.74 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 86.06 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 85.77 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 84.98 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 84.88 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 84.59 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 84.4 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 84.38 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 83.31 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 83.23 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 82.89 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 81.98 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 81.58 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 81.35 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 81.23 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 80.72 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 80.06 |
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=2.6e-22 Score=158.53 Aligned_cols=143 Identities=17% Similarity=0.289 Sum_probs=120.3
Q ss_pred CChhhhHHHhccCCCCceeecCCcChHHHHHhhCCC-CCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Q 026558 11 GEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPS-HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKK 89 (237)
Q Consensus 11 ~~~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~ 89 (237)
-+.++|++.|....-.|++..+.+.+.+.+...+.. .+.+|||+|||+|..+..+++.|+ +|+|+|+|+.+++.|+++
T Consensus 8 ~~~e~W~~~~~~~~~~w~~~~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~ 86 (229)
T d2bzga1 8 LTLEEWQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTE 86 (229)
T ss_dssp CCHHHHHHHHHHTCCTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHH
T ss_pred CCHHHHHHHHccCCCCCccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHH
Confidence 346899999988877777666677787777665433 334999999999999999999998 999999999999999987
Q ss_pred cCC-------------------CCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCC
Q 026558 90 YSN-------------------RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDK 150 (237)
Q Consensus 90 ~~~-------------------~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg 150 (237)
... ..++++.++|+.+++....+.||+|+...+++++ +++....+++++.++|+||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~-----~~~~r~~~~~~~~~~Lkpg 161 (229)
T d2bzga1 87 QNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAI-----NPGDRKCYADTMFSLLGKK 161 (229)
T ss_dssp TTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTS-----CGGGHHHHHHHHHHTEEEE
T ss_pred hhccccccchhcccccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEec-----cchhhHHHHHHHHhhcCCc
Confidence 532 1368899999998875677899999999999998 7788999999999999999
Q ss_pred cEEEEEEcC
Q 026558 151 GVYILVTYG 159 (237)
Q Consensus 151 G~l~~~~~~ 159 (237)
|++++.++.
T Consensus 162 G~~~l~~~~ 170 (229)
T d2bzga1 162 FQYLLCVLS 170 (229)
T ss_dssp EEEEEEEEE
T ss_pred ceEEEEEcc
Confidence 998887753
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.88 E-value=2e-22 Score=158.92 Aligned_cols=117 Identities=23% Similarity=0.348 Sum_probs=102.0
Q ss_pred ChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCC
Q 026558 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTG 112 (237)
Q Consensus 35 ~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~ 112 (237)
.+.++++....+++.+|||||||+|.++..+++.+. +++|+|+|+.+++.|++++. +.++++++++|+.+++ ++++
T Consensus 3 ~~~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~-~~~~ 80 (231)
T d1vl5a_ 3 DLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP-FTDE 80 (231)
T ss_dssp CHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC-SCTT
T ss_pred hHHHHHHhcCCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhccccccccccccccccccccc-cccc
Confidence 356777776555545999999999999999999975 99999999999999998873 4578999999999998 8899
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+||+|++..+++|+ .+...+++++.++|+|||++++.++..
T Consensus 81 ~fD~v~~~~~l~~~-------~d~~~~l~~~~r~LkpgG~l~i~~~~~ 121 (231)
T d1vl5a_ 81 RFHIVTCRIAAHHF-------PNPASFVSEAYRVLKKGGQLLLVDNSA 121 (231)
T ss_dssp CEEEEEEESCGGGC-------SCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred cccccccccccccc-------CCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 99999999999999 788999999999999999999976544
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.87 E-value=2.9e-22 Score=157.18 Aligned_cols=116 Identities=30% Similarity=0.488 Sum_probs=101.2
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-CCCCcEEEEccccccccccCCCc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEFQTGSF 114 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~~~~~f 114 (237)
+..++...++++. +|||||||+|.++..+++.+. +++|+|+|+.|++.|+++.. ....+.++.+|+.+++ +++++|
T Consensus 27 ~~~~~~~~l~~~~-~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~-~~~~~f 103 (226)
T d1ve3a1 27 LEPLLMKYMKKRG-KVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS-FEDKTF 103 (226)
T ss_dssp HHHHHHHSCCSCC-EEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCC-SCTTCE
T ss_pred HHHHHHHhcCCCC-EEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhcccccccccccccccccc-ccCcCc
Confidence 5666666667665 999999999999999999876 99999999999999998874 2356788999999988 888999
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
|+|++..+++|+ +..+...+|+++.++|+|||++++....
T Consensus 104 D~I~~~~~l~~~-----~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 104 DYVIFIDSIVHF-----EPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp EEEEEESCGGGC-----CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eEEEEecchhhC-----ChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 999999999998 5568889999999999999999887654
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.86 E-value=1e-21 Score=155.47 Aligned_cols=105 Identities=20% Similarity=0.313 Sum_probs=94.5
Q ss_pred CCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 47 ~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
++.+|||||||+|.++..+++.+. +++|+|+|+.|++.|+++.. +.+++.++++|+.+++ +++++||+|++..+++
T Consensus 16 ~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~ 93 (234)
T d1xxla_ 16 AEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP-FPDDSFDIITCRYAAH 93 (234)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC-SCTTCEEEEEEESCGG
T ss_pred CCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhccccccccccccccccccc-ccccccceeeeeceee
Confidence 334999999999999999999875 99999999999999998874 3468999999999988 8899999999999999
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
|+ .+...+++++.++|+|||++++..+..
T Consensus 94 ~~-------~d~~~~l~~~~r~LkpgG~~~~~~~~~ 122 (234)
T d1xxla_ 94 HF-------SDVRKAVREVARVLKQDGRFLLVDHYA 122 (234)
T ss_dssp GC-------SCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred cc-------cCHHHHHHHHHHeeCCCcEEEEEEcCC
Confidence 99 778999999999999999999876543
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.85 E-value=1.1e-20 Score=145.79 Aligned_cols=132 Identities=18% Similarity=0.270 Sum_probs=105.5
Q ss_pred CCChhhhHHHhccCCCCceeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Q 026558 10 YGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKK 89 (237)
Q Consensus 10 ~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~ 89 (237)
..++.||...|..+... .+++.......+++|||||||+|..+..+++++. +++|+|+|+.+++.++++
T Consensus 3 ~~d~~~~~~~~~~~~~~----------~~~~~~~~~~~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~ 71 (198)
T d2i6ga1 3 VRDENYFTEKYGLTRTH----------SDVLAAAKVVAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERI 71 (198)
T ss_dssp CCSHHHHHHHHCBCCCC----------HHHHHHHTTSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHH
T ss_pred cchHHHHhcccCCCCCH----------HHHHHHcccCCCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHH
Confidence 34567887777655222 2333333222234999999999999999999986 999999999999999988
Q ss_pred cC--CCCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 90 YS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 90 ~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
.. +..++.+...|+.++. .+++||+|++..+++|+ ++.....+++++.++|+|||++++.+..
T Consensus 72 ~~~~~~~~~~~~~~d~~~~~--~~~~fD~I~~~~~~~~~-----~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 136 (198)
T d2i6ga1 72 KAAEGLDNLQTDLVDLNTLT--FDGEYDFILSTVVMMFL-----EAQTIPGLIANMQRCTKPGGYNLIVAAM 136 (198)
T ss_dssp HHHTTCTTEEEEECCTTTCC--CCCCEEEEEEESCGGGS-----CTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred hhhccccchhhhheeccccc--ccccccEEEEeeeeecC-----CHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 74 4457899999998886 46889999999999998 6677889999999999999999987653
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.84 E-value=2.6e-21 Score=153.58 Aligned_cols=109 Identities=24% Similarity=0.422 Sum_probs=93.3
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCcc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
+..++....+++. +|||+|||+|.++..+++.+. +++|+|+|+.|++.|+++.. ..++.+|+.+++ +++++||
T Consensus 32 ~~~~~~~~~~~~~-~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~----~~~~~~~~~~l~-~~~~~fD 104 (246)
T d2avna1 32 IGSFLEEYLKNPC-RVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV----KNVVEAKAEDLP-FPSGAFE 104 (246)
T ss_dssp HHHHHHHHCCSCC-EEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC----SCEEECCTTSCC-SCTTCEE
T ss_pred HHHHHHHhcCCCC-EEEEECCCCchhcccccccce-EEEEeecccccccccccccc----cccccccccccc-ccccccc
Confidence 3445566666665 999999999999999999876 99999999999999999853 246788999988 8889999
Q ss_pred EEEec-cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 116 SVVDK-GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 116 ~I~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+|++. .+++|+ .+...+|+++.++|+|||++++.+.
T Consensus 105 ~ii~~~~~~~~~-------~d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 105 AVLALGDVLSYV-------ENKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp EEEECSSHHHHC-------SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceeeecchhhhh-------hhHHHHHHHHHhhcCcCcEEEEEEC
Confidence 99985 578988 6778899999999999999998764
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=2.5e-21 Score=152.06 Aligned_cols=104 Identities=14% Similarity=0.225 Sum_probs=92.4
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--CCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+|||||||+|.++..+++.+..+++|+|+|+.|++.|++++.. .++++|.++|+.+++ ++.++||+|++..+++|+
T Consensus 62 ~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~-~~~~~fD~I~~~~~l~h~ 140 (222)
T d2ex4a1 62 SCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT-PEPDSYDVIWIQWVIGHL 140 (222)
T ss_dssp SEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC-CCSSCEEEEEEESCGGGS
T ss_pred CEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccccccc-cccccccccccccccccc
Confidence 48999999999999998877666999999999999999999853 347799999999987 778999999999999999
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+.++...+++++.++|+|||.+++.+.
T Consensus 141 -----~~~~~~~~l~~i~~~Lk~~G~~~i~~~ 167 (222)
T d2ex4a1 141 -----TDQHLAEFLRRCKGSLRPNGIIVIKDN 167 (222)
T ss_dssp -----CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -----hhhhhhhHHHHHHHhcCCcceEEEEEc
Confidence 555677899999999999999998764
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.83 E-value=1.2e-20 Score=150.35 Aligned_cols=134 Identities=20% Similarity=0.368 Sum_probs=102.8
Q ss_pred hhhHHHhccCCCCceeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-C
Q 026558 14 WYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-N 92 (237)
Q Consensus 14 ~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-~ 92 (237)
++|+..|......+.. ....+..++......+..+|||+|||+|..+..+++.+. +++|+|+|+.|++.|++++. .
T Consensus 10 ~~Yd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~ 86 (251)
T d1wzna1 10 EYYDTIYRRRIERVKA--EIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKER 86 (251)
T ss_dssp GGHHHHTHHHHHTHHH--HHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhhHHH--HHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccc
Confidence 4566655544222110 112234455555555545899999999999999999986 99999999999999999974 2
Q ss_pred CCCcEEEEccccccccccCCCccEEEec-cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 93 RPQLKYIKMDVRQMDEFQTGSFDSVVDK-GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 93 ~~~~~~~~~d~~~~~~~~~~~fD~I~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
..++.+.++|+.+++ ++ ++||+|++. .+++++ +.++...+|+++.++|+|||++++..
T Consensus 87 ~~~i~~~~~d~~~l~-~~-~~fD~I~~~~~~~~~~-----~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 87 NLKIEFLQGDVLEIA-FK-NEFDAVTMFFSTIMYF-----DEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp TCCCEEEESCGGGCC-CC-SCEEEEEECSSGGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccchheehhhhhcc-cc-cccchHhhhhhhhhcC-----ChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 347999999999987 54 689999986 466766 56788899999999999999998854
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.82 E-value=2.6e-20 Score=142.82 Aligned_cols=121 Identities=16% Similarity=0.223 Sum_probs=101.1
Q ss_pred cChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC--------------CCCcEEE
Q 026558 34 PSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--------------RPQLKYI 99 (237)
Q Consensus 34 ~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~--------------~~~~~~~ 99 (237)
+.+.+++..+..+++.+|||+|||+|..+..++++|+ +|+|+|+|+.|++.|+++.+. ..++.+.
T Consensus 7 ~~~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T d1pjza_ 7 KDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIW 85 (201)
T ss_dssp HHHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEE
T ss_pred HHHHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhcccccccee
Confidence 3356666666555555999999999999999999997 999999999999999998743 1356788
Q ss_pred EccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 100 KMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 100 ~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
++|+.+++......||+|++..+++++ +......+++++.++|||||.+++..+..
T Consensus 86 ~~d~~~l~~~~~~~~D~i~~~~~l~~l-----~~~~~~~~~~~i~~~LkpgG~l~l~~~~~ 141 (201)
T d1pjza_ 86 CGDFFALTARDIGHCAAFYDRAAMIAL-----PADMRERYVQHLEALMPQACSGLLITLEY 141 (201)
T ss_dssp EECCSSSTHHHHHSEEEEEEESCGGGS-----CHHHHHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred cccccccccccccceeEEEEEeeeEec-----chhhhHHHHHHHHHhcCCCcEEEEEEccc
Confidence 889988765566789999999999998 66788899999999999999988876543
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.82 E-value=3.9e-20 Score=148.03 Aligned_cols=116 Identities=15% Similarity=0.199 Sum_probs=99.7
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccE
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDS 116 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~ 116 (237)
..+++.+...+..+|||+|||+|.++..++..+...|+++|+|+.+++.|++++.+.+++++.++|+.+++ +++++||+
T Consensus 83 ~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~ 161 (254)
T d1xtpa_ 83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETAT-LPPNTYDL 161 (254)
T ss_dssp HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCC-CCSSCEEE
T ss_pred HHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccccccc-cCCCccce
Confidence 34455544444459999999999999998877655899999999999999999987678899999999987 77889999
Q ss_pred EEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 117 I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
|++..+++|+ +..+...+|+++.++|+|||.+++...
T Consensus 162 I~~~~vl~hl-----~d~d~~~~l~~~~~~LkpgG~iii~e~ 198 (254)
T d1xtpa_ 162 IVIQWTAIYL-----TDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp EEEESCGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEeecccccc-----chhhhHHHHHHHHHhcCCCcEEEEEec
Confidence 9999999999 556678999999999999999998763
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.81 E-value=1.2e-19 Score=144.90 Aligned_cols=118 Identities=19% Similarity=0.266 Sum_probs=97.7
Q ss_pred HHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCcc
Q 026558 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 39 ~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
++.....++. +|||+|||+|..+..+++.+..+++|+|+|+.|++.|+++... ..++.+.++|+...+....++||
T Consensus 17 lI~~~~~~~~-~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD 95 (252)
T d1ri5a_ 17 LIRLYTKRGD-SVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFD 95 (252)
T ss_dssp HHHHHCCTTC-EEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEE
T ss_pred HHHHhCCCcC-EEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccce
Confidence 4555666665 9999999999999999998876899999999999999988742 24788999999766523467899
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+|++..++||++ .+.++...+++++.++|+|||++++.+...
T Consensus 96 ~V~~~~~l~~~~---~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~ 137 (252)
T d1ri5a_ 96 VISSQFSFHYAF---STSESLDIAQRNIARHLRPGGYFIMTVPSR 137 (252)
T ss_dssp EEEEESCGGGGG---SSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred EEEEcceeeecC---CCHHHHHHHHHHHhceeCCCCEEEEEecCH
Confidence 999999999873 345678899999999999999998877543
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.81 E-value=6.9e-20 Score=148.73 Aligned_cols=102 Identities=15% Similarity=0.143 Sum_probs=91.5
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--C-CCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--N-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||||||+|.++..++++...+|+|+|+|+.+++.|+++.. + ..+++++++|+.+++ +++++||+|++..+++|
T Consensus 69 ~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~-~~~~sfD~V~~~~~l~h 147 (282)
T d2o57a1 69 AKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP-CEDNSYDFIWSQDAFLH 147 (282)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS-SCTTCEEEEEEESCGGG
T ss_pred CEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccccccccc-ccccccchhhccchhhh
Confidence 4999999999999999998744599999999999999998874 2 248999999999998 88899999999999999
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+ .+...+++++.++|+|||++++.++
T Consensus 148 ~-------~d~~~~l~~~~~~LkpgG~l~~~~~ 173 (282)
T d2o57a1 148 S-------PDKLKVFQECARVLKPRGVMAITDP 173 (282)
T ss_dssp C-------SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c-------cCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9 6788999999999999999998764
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.80 E-value=1.8e-19 Score=143.33 Aligned_cols=113 Identities=16% Similarity=0.233 Sum_probs=92.9
Q ss_pred HHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccccCCCccE
Q 026558 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDS 116 (237)
Q Consensus 38 ~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~ 116 (237)
..+.....++ ++|||+|||+|.++..+++.+. +++|+|+|+.|++.|+++.+. ..+++++++|+.+++ + .++||+
T Consensus 29 ~~~~~~~~~~-~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~-~-~~~fD~ 104 (246)
T d1y8ca_ 29 EKCVENNLVF-DDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN-I-NRKFDL 104 (246)
T ss_dssp HHHHTTTCCT-TEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC-C-SCCEEE
T ss_pred HHHHHhCCCC-CeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCccceeeccchhhhc-c-cccccc
Confidence 3343333333 3899999999999999999986 999999999999999998742 347999999999886 3 578999
Q ss_pred EEec-cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 117 VVDK-GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 117 I~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
|+|. .+++++ .+.+++..++++++++|+|||.+++...
T Consensus 105 i~~~~~~~~~~----~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 105 ITCCLDSTNYI----IDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp EEECTTGGGGC----CSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cceeeeeeecc----CCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 9985 466666 5678999999999999999999987543
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.79 E-value=4.8e-19 Score=139.05 Aligned_cols=115 Identities=17% Similarity=0.263 Sum_probs=93.4
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHc---CCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEcccccccccc
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDD---GYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQ 110 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~---~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~ 110 (237)
..++.....++. +|||||||+|..+..+++. ...+++|+|+|+.|++.|+++.+. ..++.+...|+.+.+
T Consensus 30 ~~~~~~~~~~~~-~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~--- 105 (225)
T d1im8a_ 30 GMLAERFVTADS-NVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--- 105 (225)
T ss_dssp HHHHHHHCCTTC-EEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC---
T ss_pred HHHHHHhcCCCC-EEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc---
Confidence 344455566665 9999999999999999875 234999999999999999998742 235667777776664
Q ss_pred CCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 111 ~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
...+|+|++..+++++ +.++...+|++++++|+|||.+++.+...
T Consensus 106 ~~~~d~i~~~~~l~~~-----~~~d~~~~l~~i~~~LkpgG~li~~~~~~ 150 (225)
T d1im8a_ 106 IKNASMVILNFTLQFL-----PPEDRIALLTKIYEGLNPNGVLVLSEKFR 150 (225)
T ss_dssp CCSEEEEEEESCGGGS-----CGGGHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred cccceeeEEeeecccc-----ChhhHHHHHHHHHHhCCCCceeecccccc
Confidence 5678999999999998 77789999999999999999999986543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=4.4e-19 Score=141.05 Aligned_cols=101 Identities=16% Similarity=0.138 Sum_probs=89.1
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--C-CCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--N-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||||||+|..+..+++....+++|+|+|+.+++.|+++.. + .++++|..+|+.++. .+++||+|++..+++|
T Consensus 35 ~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~--~~~~fD~v~~~~~~~~ 112 (245)
T d1nkva_ 35 TRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV--ANEKCDVAACVGATWI 112 (245)
T ss_dssp CEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC--CSSCEEEEEEESCGGG
T ss_pred CEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcc--ccCceeEEEEEehhhc
Confidence 4999999999999999988754599999999999999999863 2 246899999999874 5789999999999999
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+ .+...+++++.++|||||++++...
T Consensus 113 ~-------~d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 113 A-------GGFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp T-------SSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred c-------CCHHHHHHHHHHHcCcCcEEEEEec
Confidence 8 6789999999999999999998763
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.77 E-value=1e-18 Score=137.25 Aligned_cols=97 Identities=19% Similarity=0.310 Sum_probs=88.0
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceeccC
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCG 129 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~ 129 (237)
+|||||||+|.++..+++.+. +++|+|+|+.+++.|+++.. .++.++.+|+.+.+ + +++||+|++..+++|+
T Consensus 23 ~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~--~~~~~~~~~~~~~~-~-~~~fD~I~~~~vleh~--- 94 (225)
T d2p7ia1 23 NLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLK--DGITYIHSRFEDAQ-L-PRRYDNIVLTHVLEHI--- 94 (225)
T ss_dssp CEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSC--SCEEEEESCGGGCC-C-SSCEEEEEEESCGGGC---
T ss_pred cEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhcccc--cccccccccccccc-c-ccccccccccceeEec---
Confidence 899999999999999998876 89999999999999999875 37899999998876 3 6889999999999999
Q ss_pred CCChHHHHHHHHHHH-HhcCCCcEEEEEEc
Q 026558 130 SNSRQNATQMLKEVW-RVLKDKGVYILVTY 158 (237)
Q Consensus 130 ~~~~~~~~~~l~~~~-~~L~pgG~l~~~~~ 158 (237)
.+...++.++. ++|+|||.+++...
T Consensus 95 ----~d~~~~l~~i~~~~Lk~gG~l~i~~p 120 (225)
T d2p7ia1 95 ----DDPVALLKRINDDWLAEGGRLFLVCP 120 (225)
T ss_dssp ----SSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ----CCHHHHHHHHHHHhcCCCceEEEEeC
Confidence 78899999998 79999999999764
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=2.3e-18 Score=133.36 Aligned_cols=103 Identities=21% Similarity=0.285 Sum_probs=88.6
Q ss_pred HHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEE
Q 026558 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSV 117 (237)
Q Consensus 38 ~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I 117 (237)
..+.... ++. +|||||||+|.++..+. +++|+|+|+.+++.|+++ ++.++++|+.+++ +++++||+|
T Consensus 29 ~~~~~~~-~~~-~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~-----~~~~~~~d~~~l~-~~~~~fD~I 95 (208)
T d1vlma_ 29 QAVKCLL-PEG-RGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR-----GVFVLKGTAENLP-LKDESFDFA 95 (208)
T ss_dssp HHHHHHC-CSS-CEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT-----TCEEEECBTTBCC-SCTTCEEEE
T ss_pred HHHHhhC-CCC-eEEEECCCCcccccccc-----eEEEEeCChhhccccccc-----ccccccccccccc-ccccccccc
Confidence 3444443 344 89999999999987774 568999999999999986 6899999999998 888999999
Q ss_pred EeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
++..+++|+ .++..+++++.++|+|||.+++.+...
T Consensus 96 ~~~~~l~h~-------~d~~~~l~~~~~~L~pgG~l~i~~~~~ 131 (208)
T d1vlma_ 96 LMVTTICFV-------DDPERALKEAYRILKKGGYLIVGIVDR 131 (208)
T ss_dssp EEESCGGGS-------SCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred ccccccccc-------cccccchhhhhhcCCCCceEEEEecCC
Confidence 999999999 678899999999999999999988654
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.74 E-value=8.7e-18 Score=135.85 Aligned_cols=112 Identities=11% Similarity=0.155 Sum_probs=90.5
Q ss_pred HHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccccccCCCc
Q 026558 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSF 114 (237)
Q Consensus 38 ~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~f 114 (237)
.++..+-.+++.+|||||||+|.++..+++....+|+|+|+|+++++.|++++... ..+.+...|..++ +++|
T Consensus 43 ~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~----~~~f 118 (280)
T d2fk8a1 43 LNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF----AEPV 118 (280)
T ss_dssp HHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC----CCCC
T ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh----ccch
Confidence 33444333333499999999999999998874459999999999999999998432 3566777776655 3689
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
|.|++..+++|+ +..+...+++++.++|||||++++.+.
T Consensus 119 D~i~si~~~eh~-----~~~~~~~~f~~i~~~LkpgG~~~i~~i 157 (280)
T d2fk8a1 119 DRIVSIEAFEHF-----GHENYDDFFKRCFNIMPADGRMTVQSS 157 (280)
T ss_dssp SEEEEESCGGGT-----CGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred hhhhHhhHHHHh-----hhhhHHHHHHHHHhccCCCceEEEEEe
Confidence 999999999999 667889999999999999999999763
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=8.9e-18 Score=135.17 Aligned_cols=106 Identities=24% Similarity=0.390 Sum_probs=89.1
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCcc
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
...+....+..+.+|||+|||+|.++..+++.+ ...++|+|+|+.+++.|+++. +++.+.++|+.+++ +++++||
T Consensus 74 ~~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~---~~~~~~~~d~~~l~-~~~~sfD 149 (268)
T d1p91a_ 74 VAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---PQVTFCVASSHRLP-FSDTSMD 149 (268)
T ss_dssp HHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---TTSEEEECCTTSCS-BCTTCEE
T ss_pred HHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc---ccccceeeehhhcc-CCCCCEE
Confidence 334444555555599999999999999999986 348999999999999999986 67999999999998 8899999
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+|++...+++ ++++.|+|||||++++.+...
T Consensus 150 ~v~~~~~~~~--------------~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 150 AIIRIYAPCK--------------AEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp EEEEESCCCC--------------HHHHHHHEEEEEEEEEEEECT
T ss_pred EEeecCCHHH--------------HHHHHHHhCCCcEEEEEeeCC
Confidence 9999776654 457899999999999988654
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.73 E-value=5.6e-18 Score=137.27 Aligned_cols=101 Identities=13% Similarity=0.206 Sum_probs=88.8
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCC-CCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.++..+++.. ..+++|+|+|+.+++.|++++... .+++|.+.|+.+++ + .++||+|++..+++|
T Consensus 29 ~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~-~-~~~fD~v~~~~~l~~ 106 (281)
T d2gh1a1 29 VHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE-L-NDKYDIAICHAFLLH 106 (281)
T ss_dssp CEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCC-C-SSCEEEEEEESCGGG
T ss_pred CEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccc-c-cCCceEEEEehhhhc
Confidence 499999999999999998863 248999999999999999998543 37899999999887 5 457999999999999
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+ .++..+++++.++|||||.+++.+.
T Consensus 107 ~-------~d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 107 M-------TTPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp C-------SSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred C-------CCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 9 7788999999999999999998774
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.73 E-value=4.2e-18 Score=129.87 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=92.0
Q ss_pred CcChHHHHHhhCC-CCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEcccccccc
Q 026558 33 YPSLAPLIKLYVP-SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDE 108 (237)
Q Consensus 33 ~~~~~~~l~~~~~-~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~ 108 (237)
.++++.++-..+. .++.+|||+|||+|.+++.+++.+. +++++|+++.+++.|+++++ +. ++++++++|+.+..
T Consensus 18 ~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~-~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~- 95 (186)
T d1l3ia_ 18 AMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVR-RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL- 95 (186)
T ss_dssp CHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH-
T ss_pred hHHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccce-EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcc-
Confidence 3345444444443 3335999999999999999998764 99999999999999999984 22 58999999998876
Q ss_pred ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 109 ~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
.....||+|++....++. ..+++.+.+.|+|||++++....
T Consensus 96 ~~~~~~D~v~~~~~~~~~----------~~~~~~~~~~LkpgG~lvi~~~~ 136 (186)
T d1l3ia_ 96 CKIPDIDIAVVGGSGGEL----------QEILRIIKDKLKPGGRIIVTAIL 136 (186)
T ss_dssp TTSCCEEEEEESCCTTCH----------HHHHHHHHHTEEEEEEEEEEECB
T ss_pred cccCCcCEEEEeCccccc----------hHHHHHHHHHhCcCCEEEEEeec
Confidence 667899999998765544 67899999999999999887643
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.72 E-value=1.8e-17 Score=134.42 Aligned_cols=117 Identities=14% Similarity=0.173 Sum_probs=89.6
Q ss_pred HHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEccccccccccCCCccE
Q 026558 40 IKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDEFQTGSFDS 116 (237)
Q Consensus 40 l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~~~~~~fD~ 116 (237)
+...-.+++.+|||||||+|.++..+++...++++|+++|+++++.++++.. +. ..+.+...|.. +.+++||.
T Consensus 54 ~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~----~~~~~fD~ 129 (291)
T d1kpia_ 54 LDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE----EFDEPVDR 129 (291)
T ss_dssp HHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG----GCCCCCSE
T ss_pred HHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc----ccccccce
Confidence 3333333335999999999999999987654699999999999999998874 22 35666666653 34688999
Q ss_pred EEeccccceeccCC--CChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 117 VVDKGTLDSLLCGS--NSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 117 I~~~~~l~~~~~~~--~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
|+|..+++|+.... ...+....+++++.++|+|||++++.+...
T Consensus 130 i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~ 175 (291)
T d1kpia_ 130 IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI 175 (291)
T ss_dssp EEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEEC
T ss_pred EeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEec
Confidence 99999999982100 123578999999999999999999987543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.71 E-value=6e-17 Score=130.95 Aligned_cols=104 Identities=21% Similarity=0.275 Sum_probs=89.3
Q ss_pred CCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEecccc
Q 026558 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 47 ~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l 123 (237)
++.+|||||||+|..+..+++...++|+|+++|+++++.|+++... ..++++...|..+++ ++||.|++...+
T Consensus 62 ~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~fD~i~si~~~ 137 (285)
T d1kpga_ 62 PGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD----EPVDRIVSIGAF 137 (285)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC----CCCSEEEEESCG
T ss_pred CCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc----ccccceeeehhh
Confidence 3349999999999999998876556999999999999999998732 357889999987764 689999999999
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+|+ +......+++++.++|+|||++++.+..
T Consensus 138 eh~-----~~~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 138 EHF-----GHERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp GGT-----CTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred hhc-----CchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 998 5567789999999999999999997753
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.71 E-value=5.8e-17 Score=124.23 Aligned_cols=114 Identities=16% Similarity=0.281 Sum_probs=90.6
Q ss_pred HHHHhhC-CCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--C--CCCcEEEEccccccccccCC
Q 026558 38 PLIKLYV-PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--N--RPQLKYIKMDVRQMDEFQTG 112 (237)
Q Consensus 38 ~~l~~~~-~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~--~~~~~~~~~d~~~~~~~~~~ 112 (237)
+++-..+ ..+..+|||+|||+|.++..+++.+. +++++|+|+.+++.|+++++ + ..++++..+|+.+. ++++
T Consensus 42 ~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~-~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~--~~~~ 118 (194)
T d1dusa_ 42 KILVENVVVDKDDDILDLGCGYGVIGIALADEVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN--VKDR 118 (194)
T ss_dssp HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT--CTTS
T ss_pred HHHHHhCCcCCCCeEEEEeecCChhHHHHHhhcc-ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh--hccC
Confidence 3333333 33335999999999999999998865 99999999999999999874 2 23688999999774 4678
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+||+|+++.++++. .+....+++++.++|+|||.+++.....
T Consensus 119 ~fD~Ii~~~p~~~~------~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 160 (194)
T d1dusa_ 119 KYNKIITNPPIRAG------KEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp CEEEEEECCCSTTC------HHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred CceEEEEcccEEec------chhhhhHHHHHHHhcCcCcEEEEEEeCc
Confidence 99999999887654 3446789999999999999988766433
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=2.9e-17 Score=133.72 Aligned_cols=109 Identities=21% Similarity=0.332 Sum_probs=84.6
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC------CCcEEEEcccccccc--ccCCCccEEEec
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR------PQLKYIKMDVRQMDE--FQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~------~~~~~~~~d~~~~~~--~~~~~fD~I~~~ 120 (237)
.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.|+++.... ....+...++..+.. ...++||+|++.
T Consensus 58 ~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~~~ 136 (292)
T d1xvaa_ 58 HRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICL 136 (292)
T ss_dssp CEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEEC
T ss_pred CEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEEEEe
Confidence 4899999999999999999986 9999999999999999886321 134455555544321 235789999975
Q ss_pred -cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 121 -GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 121 -~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.+++|+.....+.++...+|+++.++|+|||+|++...
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 137 GNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp SSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 47888744444557889999999999999999988654
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.70 E-value=2e-17 Score=131.56 Aligned_cols=108 Identities=15% Similarity=0.197 Sum_probs=87.4
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-CCCCcEEEEccccccccccCCCcc
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
.+.+.....++. +|||+|||+|.+++.+++.+. +++|+|+|+.+++.|+++.+ +..++++.++|+.+. ++.++||
T Consensus 111 l~~l~~~~~~g~-~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~--~~~~~fD 186 (254)
T d2nxca1 111 LKALARHLRPGD-KVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA--LPFGPFD 186 (254)
T ss_dssp HHHHHHHCCTTC-EEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH--GGGCCEE
T ss_pred HHHHHhhcCccC-EEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCCceeEEecccccc--ccccccc
Confidence 334445555555 999999999999999998875 89999999999999999884 334678899988764 4578999
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+|+++... .....+++++.++|||||++++...
T Consensus 187 ~V~ani~~----------~~l~~l~~~~~~~LkpGG~lilSgi 219 (254)
T d2nxca1 187 LLVANLYA----------ELHAALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp EEEEECCH----------HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhcccc----------ccHHHHHHHHHHhcCCCcEEEEEec
Confidence 99997544 4457789999999999999998653
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=4.4e-18 Score=135.79 Aligned_cols=149 Identities=14% Similarity=0.124 Sum_probs=99.3
Q ss_pred CCCCChhhhHHHhccCCCCceeecCCcChHHHHHhhCC---CCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHH
Q 026558 8 QAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVP---SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIE 84 (237)
Q Consensus 8 ~~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~ 84 (237)
+.|++++||+.+|......+.......-+...+...+. ..+.+|||||||+|.++..++..+..+++|+|+|+.+++
T Consensus 9 ~~f~~~~Y~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~ 88 (257)
T d2a14a1 9 KHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNRE 88 (257)
T ss_dssp HHCCHHHHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHH
T ss_pred hhcChHHHHHHHhCcCccccHHHHHHHHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHH
Confidence 35677899999988765443311001111122222211 122389999999999988888776558999999999999
Q ss_pred HHHHHcCCCC-Cc-------------------------------EEEEccccc---cccccCCCccEEEeccccceeccC
Q 026558 85 AMMKKYSNRP-QL-------------------------------KYIKMDVRQ---MDEFQTGSFDSVVDKGTLDSLLCG 129 (237)
Q Consensus 85 ~a~~~~~~~~-~~-------------------------------~~~~~d~~~---~~~~~~~~fD~I~~~~~l~~~~~~ 129 (237)
.|+++++... .. .....+... ...++.++||+|++..+++|+.
T Consensus 89 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~-- 166 (257)
T d2a14a1 89 ELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECAC-- 166 (257)
T ss_dssp HHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC--
T ss_pred HHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhc--
Confidence 9999874211 11 111111111 1125678999999999999882
Q ss_pred CCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 130 SNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 130 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
...++...+++++.++|||||.+++.+..
T Consensus 167 -~~~~~~~~~l~~i~~~LkpGG~li~~~~~ 195 (257)
T d2a14a1 167 -CSLDAYRAALCNLASLLKPGGHLVTTVTL 195 (257)
T ss_dssp -SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred -ccHHHHHHHHHHHHhccCCCcEEEEEEec
Confidence 23457889999999999999999998753
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.70 E-value=1.3e-16 Score=125.16 Aligned_cols=123 Identities=16% Similarity=0.199 Sum_probs=98.3
Q ss_pred eecCCcChHHHHHhhC---C-CCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccc
Q 026558 29 WYQKYPSLAPLIKLYV---P-SHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDV 103 (237)
Q Consensus 29 ~~~~~~~~~~~l~~~~---~-~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~ 103 (237)
|....+.+...+...+ + +++.+|||||||+|..+..+++.+ ...|+|+|+|+.+++.++++....+++.++..|.
T Consensus 52 w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~ 131 (230)
T d1g8sa_ 52 WNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDA 131 (230)
T ss_dssp CCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCT
T ss_pred ECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEee
Confidence 4333444666665532 2 222499999999999999999875 3599999999999999999988778899999999
Q ss_pred cccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 104 RQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 104 ~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.....+....+|++++...+++. .+...++.++.+.|||||.+++...
T Consensus 132 ~~~~~~~~~~~~v~~i~~~~~~~-------~~~~~~l~~~~r~LKpgG~~~i~~k 179 (230)
T d1g8sa_ 132 NKPQEYANIVEKVDVIYEDVAQP-------NQAEILIKNAKWFLKKGGYGMIAIK 179 (230)
T ss_dssp TCGGGGTTTCCCEEEEEECCCST-------THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCcccccccceeEEeeccccch-------HHHHHHHHHHHHhcccCceEEEEee
Confidence 88765666778887777667666 7889999999999999999988753
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=3.5e-17 Score=131.31 Aligned_cols=147 Identities=16% Similarity=0.193 Sum_probs=99.5
Q ss_pred CCCChhhhHHHhccCCCCceeecCC-cChHHHHHhhCC---CCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHH
Q 026558 9 AYGEPWYWDNRYAHESGPFDWYQKY-PSLAPLIKLYVP---SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIE 84 (237)
Q Consensus 9 ~~~~~~~w~~~y~~~~~~~~~~~~~-~~~~~~l~~~~~---~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~ 84 (237)
.|+...||+.+|....+.+...... .-....+...+. ..+.+|||+|||+|.++...+.....+|+|+|+|+.+++
T Consensus 12 ~f~~~~Y~~~~y~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~ 91 (263)
T d2g72a1 12 RFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQ 91 (263)
T ss_dssp GCCHHHHHHHHHSTTTTCCSSTTSHHHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHH
T ss_pred hcCHHHHHHHHhCcCcccchhhhhhhhhHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHH
Confidence 4777899999998765443211111 001112222221 122499999999998876655554558999999999999
Q ss_pred HHHHHcCCCC-C-------------------------------cEEEEccccccc-----cccCCCccEEEeccccceec
Q 026558 85 AMMKKYSNRP-Q-------------------------------LKYIKMDVRQMD-----EFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 85 ~a~~~~~~~~-~-------------------------------~~~~~~d~~~~~-----~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+++++...+ . ..+..+|+.... ....++||+|++..+++++.
T Consensus 92 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~ 171 (263)
T d2g72a1 92 ELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVS 171 (263)
T ss_dssp HHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHC
T ss_pred HHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHc
Confidence 9998874321 1 123445554321 13456899999999999982
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.+.++...+++++.++|||||.+++.+.
T Consensus 172 ---~~~~~~~~~l~~~~~~LkPGG~li~~~~ 199 (263)
T d2g72a1 172 ---PDLASFQRALDHITTLLRPGGHLLLIGA 199 (263)
T ss_dssp ---SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ---cCHHHHHHHHHHHHHHcCCCCEEEEecc
Confidence 1245789999999999999999998764
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=3.9e-17 Score=128.44 Aligned_cols=109 Identities=14% Similarity=0.158 Sum_probs=86.0
Q ss_pred HhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccc-cccCCCccEEE
Q 026558 41 KLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMD-EFQTGSFDSVV 118 (237)
Q Consensus 41 ~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~-~~~~~~fD~I~ 118 (237)
.....++ ++|||||||+|..+..+++.+..+++++|+|+.+++.|+++... ..++.++..|+.... .++.++||.|+
T Consensus 48 ~~~~~~g-~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 126 (229)
T d1zx0a1 48 AAASSKG-GRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGIL 126 (229)
T ss_dssp HHHTTTC-EEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred HhhccCC-CeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccccccccccccccccccccccccccee
Confidence 3333444 49999999999999999988656899999999999999999854 346777788876542 26678999998
Q ss_pred ec-----cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 119 DK-----GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 119 ~~-----~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+ ..++++ .+...+++++.|+|||||+|++..
T Consensus 127 fD~~~~~~~~~~~-------~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 127 YDTYPLSEETWHT-------HQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp ECCCCCBGGGTTT-------HHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ecccccccccccc-------cCHHHHHHHHHHHcCCCcEEEEEe
Confidence 54 334444 788899999999999999998743
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.65 E-value=8.8e-16 Score=122.30 Aligned_cols=114 Identities=11% Similarity=0.154 Sum_probs=90.8
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCC
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTG 112 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~ 112 (237)
..++...--.+.++|||||||+|.++..++++. ..+++++|+ +.+++.++++... ..+++++.+|+.+.. ..
T Consensus 70 ~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~---~~ 145 (253)
T d1tw3a2 70 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL---PR 145 (253)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC---SS
T ss_pred HHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc---cc
Confidence 334443332333599999999999999999886 348999998 6788999888742 357999999987643 35
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+||+|++..++|++ +.+....+|++++++|+|||++++....
T Consensus 146 ~~D~v~~~~vlh~~-----~d~~~~~~L~~~~~~LkPGG~l~i~e~~ 187 (253)
T d1tw3a2 146 KADAIILSFVLLNW-----PDHDAVRILTRCAEALEPGGRILIHERD 187 (253)
T ss_dssp CEEEEEEESCGGGS-----CHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred chhheeeccccccC-----CchhhHHHHHHHHHhcCCCcEEEEEecc
Confidence 79999999999998 6677788999999999999999997753
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.5e-16 Score=128.50 Aligned_cols=105 Identities=13% Similarity=0.148 Sum_probs=82.5
Q ss_pred cEEEEccCCchhHHHHHHc----C---CCeEEEEeCCHHHHHHHHHHcCCCC---CcE--EEEcccccc-----ccccCC
Q 026558 50 RILIVGCGNSAFSEGMVDD----G---YEDVVNVDISSVVIEAMMKKYSNRP---QLK--YIKMDVRQM-----DEFQTG 112 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~----~---~~~~~~vD~s~~~~~~a~~~~~~~~---~~~--~~~~d~~~~-----~~~~~~ 112 (237)
+|||+|||+|.++..+++. . ...++|+|+|+.|++.++++..... ++. +...++.+. ...+.+
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQ 122 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCC
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCCC
Confidence 7999999999998887653 1 2368999999999999999975433 333 344444321 124678
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
+||+|++.++++|+ .++..+++++.++|+|||.+++......
T Consensus 123 ~fD~I~~~~~l~~~-------~d~~~~l~~l~~~LkpgG~l~i~~~~~~ 164 (280)
T d1jqea_ 123 KWDFIHMIQMLYYV-------KDIPATLKFFHSLLGTNAKMLIIVVSGS 164 (280)
T ss_dssp CEEEEEEESCGGGC-------SCHHHHHHHHHHTEEEEEEEEEEEECTT
T ss_pred ceeEEEEccceecC-------CCHHHHHHHHHhhCCCCCEEEEEEecCc
Confidence 99999999999999 7889999999999999999988876543
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.63 E-value=1.2e-15 Score=117.47 Aligned_cols=108 Identities=18% Similarity=0.256 Sum_probs=87.5
Q ss_pred CCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccc-cccCCCccEEEecc
Q 026558 46 SHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMD-EFQTGSFDSVVDKG 121 (237)
Q Consensus 46 ~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~-~~~~~~fD~I~~~~ 121 (237)
..+ .|||||||+|..+..+++.. ...++|+|+++.++..|.++.. +..|+.++++|+..+. .++++++|.|++..
T Consensus 29 ~~P-lvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~f 107 (204)
T d2fcaa1 29 DNP-IHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 107 (204)
T ss_dssp CCC-EEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCc-eEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccc
Confidence 344 89999999999999999886 3499999999999999988874 5569999999998764 36789999999876
Q ss_pred ccceeccCCCChH------HHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 122 TLDSLLCGSNSRQ------NATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 122 ~l~~~~~~~~~~~------~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+..+. ... ....+++++.++|||||.|++.|-.
T Consensus 108 p~P~~-----k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~ 146 (204)
T d2fcaa1 108 SDPWP-----KKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN 146 (204)
T ss_dssp CCCCC-----SGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC
T ss_pred ccccc-----hhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECC
Confidence 65443 111 1257999999999999999998743
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=2.4e-16 Score=126.31 Aligned_cols=146 Identities=12% Similarity=0.163 Sum_probs=105.3
Q ss_pred CChhhhHHHhccCCCCceeecCCcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHH
Q 026558 11 GEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKK 89 (237)
Q Consensus 11 ~~~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~ 89 (237)
+.+.||...+...++.+.-+...+.+.+..-......+.+|||+|||+|.+++.++... ..+++++|+|+.+++.|++|
T Consensus 72 G~~~F~~~~~~v~~~VlIPRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~N 151 (274)
T d2b3ta1 72 GVREFWSLPLFVSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRN 151 (274)
T ss_dssp CEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHH
T ss_pred CcEEEeeeEEEEeccccccccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHH
Confidence 34456666666666666533333334443333344444589999999999999998765 45999999999999999999
Q ss_pred cC--CCCCcEEEEccccccccccCCCccEEEecccccee------------------ccCCCChHHHHHHHHHHHHhcCC
Q 026558 90 YS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL------------------LCGSNSRQNATQMLKEVWRVLKD 149 (237)
Q Consensus 90 ~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~------------------~~~~~~~~~~~~~l~~~~~~L~p 149 (237)
+. +..+++++++|+.+. ++..+||+|+++.+.-.. .++.++......+++++.++|+|
T Consensus 152 a~~~~~~~v~~~~~d~~~~--~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~ 229 (274)
T d2b3ta1 152 AQHLAIKNIHILQSDWFSA--LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS 229 (274)
T ss_dssp HHHHTCCSEEEECCSTTGG--GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE
T ss_pred HHHhCcccceeeecccccc--cCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCC
Confidence 84 334799999998775 456799999999764211 11113345778899999999999
Q ss_pred CcEEEEEEc
Q 026558 150 KGVYILVTY 158 (237)
Q Consensus 150 gG~l~~~~~ 158 (237)
||.+++...
T Consensus 230 ~G~l~lEig 238 (274)
T d2b3ta1 230 GGFLLLEHG 238 (274)
T ss_dssp EEEEEEECC
T ss_pred CCEEEEEEC
Confidence 999988654
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.62 E-value=1.1e-15 Score=118.23 Aligned_cols=100 Identities=15% Similarity=0.186 Sum_probs=80.7
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCC---CccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTG---SFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~---~fD~I~~~~~l~ 124 (237)
.+|||+|||+|..+..+++.. ..+|+|+|+|+.+++.|+++.+..+++.++..|+.... .... .+|+|+. .+.
T Consensus 58 ~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~-~~~~~~~~vd~v~~--~~~ 134 (209)
T d1nt2a_ 58 ERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPW-KYSGIVEKVDLIYQ--DIA 134 (209)
T ss_dssp CEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGG-GTTTTCCCEEEEEE--CCC
T ss_pred CEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCcc-ccccccceEEEEEe--ccc
Confidence 399999999999999999864 34899999999999999998866679999999998765 3333 3444443 333
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+. .+...+++++.++|||||++++...
T Consensus 135 ~~-------~~~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 135 QK-------NQIEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp ST-------THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Ch-------hhHHHHHHHHHHHhccCCeEEEEEE
Confidence 33 6778899999999999999988763
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.62 E-value=1.1e-14 Score=113.70 Aligned_cols=119 Identities=15% Similarity=0.176 Sum_probs=90.7
Q ss_pred cCCcC-hHHHHHhhC----CCCCCcEEEEccCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccc
Q 026558 31 QKYPS-LAPLIKLYV----PSHHQRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDV 103 (237)
Q Consensus 31 ~~~~~-~~~~l~~~~----~~~~~~iLdlG~G~G~~~~~~~~~-~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~ 103 (237)
.++.+ +...+...+ ..++.+|||+|||+|..+..+++. | ...|+++|+|+.+++.++++.+..+++..+..|+
T Consensus 52 ~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~ 131 (227)
T d1g8aa_ 52 NPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDA 131 (227)
T ss_dssp CTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCT
T ss_pred CCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEEC
Confidence 34443 555554332 122239999999999999999986 3 3499999999999999999998778888899988
Q ss_pred ccccc--ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 104 RQMDE--FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 104 ~~~~~--~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
..... .....+|+|++. +.+. .+...+++++.+.|+|||++++...
T Consensus 132 ~~~~~~~~~~~~vD~i~~d--~~~~-------~~~~~~l~~~~~~LkpgG~lvi~~k 179 (227)
T d1g8aa_ 132 TKPEEYRALVPKVDVIFED--VAQP-------TQAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp TCGGGGTTTCCCEEEEEEC--CCST-------THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCcccccccccceEEEEEE--cccc-------chHHHHHHHHHHhcccCCeEEEEEE
Confidence 66542 234678888774 2233 6778899999999999999988764
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.61 E-value=3.8e-15 Score=115.98 Aligned_cols=107 Identities=22% Similarity=0.192 Sum_probs=86.6
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccE
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDS 116 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~ 116 (237)
..++..+..+++.+|||+|||+|.++..+++.+. +|+++|+++.+++.|++++....++.+..+|..... ...++||+
T Consensus 60 a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~-~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~-~~~~pfD~ 137 (224)
T d1vbfa_ 60 IFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVD-KVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGY-EEEKPYDR 137 (224)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCC-GGGCCEEE
T ss_pred HHHHHHhhhcccceEEEecCCCCHHHHHHHHHhc-ccccccccHHHHHHHHHHHhcccccccccCchhhcc-hhhhhHHH
Confidence 3445554444445999999999999999988864 999999999999999999887789999999987754 34678999
Q ss_pred EEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 117 I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
|++...+.++ .+.+.+.|+|||++++...
T Consensus 138 Iiv~~a~~~i-------------p~~l~~qLk~GGrLV~pvg 166 (224)
T d1vbfa_ 138 VVVWATAPTL-------------LCKPYEQLKEGGIMILPIG 166 (224)
T ss_dssp EEESSBBSSC-------------CHHHHHTEEEEEEEEEEEC
T ss_pred HHhhcchhhh-------------hHHHHHhcCCCCEEEEEEc
Confidence 9998887766 2346688999999988653
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.61 E-value=1.8e-15 Score=117.33 Aligned_cols=108 Identities=17% Similarity=0.133 Sum_probs=86.3
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccC
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQT 111 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~ 111 (237)
+..++..+..+++.+|||+|||+|..+..+++.. ...++++|+++.+++.|+++++ +..++.+.++|+.+.. ...
T Consensus 64 ~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~-~~~ 142 (213)
T d1dl5a1 64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV-PEF 142 (213)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC-GGG
T ss_pred hHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcc-ccc
Confidence 3455655544444599999999999999998753 3489999999999999999984 4468889999998765 557
Q ss_pred CCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
++||+|++...++++ . +++.+.|+|||++++..
T Consensus 143 ~~fD~I~~~~~~~~~-------p------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 143 SPYDVIFVTVGVDEV-------P------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp CCEEEEEECSBBSCC-------C------HHHHHHEEEEEEEEEEB
T ss_pred cchhhhhhhccHHHh-------H------HHHHHhcCCCcEEEEEE
Confidence 789999999988877 1 24678899999998854
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.57 E-value=1.6e-14 Score=111.04 Aligned_cols=110 Identities=21% Similarity=0.280 Sum_probs=85.0
Q ss_pred cEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccc-ccCCCccEEEeccccce
Q 026558 50 RILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDE-FQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~-~~~~~fD~I~~~~~l~~ 125 (237)
.|||||||+|.++..+++.. ...++|+|+++.++..|.++.. +..|+.++.+|+.++.. ++..++|.|++..+--+
T Consensus 34 lvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPdPw 113 (204)
T d1yzha1 34 IHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPW 113 (204)
T ss_dssp EEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCCCC
T ss_pred eEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccccc
Confidence 89999999999999999886 4589999999999999988874 45799999999987653 67889999987654322
Q ss_pred eccCC-CChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 126 LLCGS-NSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 126 ~~~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
.=..+ ..+-....+|+.+.++|+|||.+++.|-.
T Consensus 114 ~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~ 148 (204)
T d1yzha1 114 PKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN 148 (204)
T ss_dssp CSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred cchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECC
Confidence 10000 00001267999999999999999998743
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.57 E-value=2.8e-14 Score=112.74 Aligned_cols=96 Identities=15% Similarity=0.198 Sum_probs=80.4
Q ss_pred CcEEEEccCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-~-~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l 123 (237)
.+|||+|||+|.++..+++. + ..+++++|+++++++.|+++++. ..++++..+|+.+. ++++.||.|+++.
T Consensus 87 ~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~--~~~~~fD~V~ld~-- 162 (250)
T d1yb2a1 87 MDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF--ISDQMYDAVIADI-- 162 (250)
T ss_dssp CEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC--CCSCCEEEEEECC--
T ss_pred CEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc--cccceeeeeeecC--
Confidence 49999999999999999986 3 35999999999999999999842 35899999999876 4678899998752
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.++..+++++.++|||||++++...
T Consensus 163 ----------p~p~~~l~~~~~~LKpGG~lv~~~P 187 (250)
T d1yb2a1 163 ----------PDPWNHVQKIASMMKPGSVATFYLP 187 (250)
T ss_dssp ----------SCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred ----------CchHHHHHHHHHhcCCCceEEEEeC
Confidence 2335679999999999999987653
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.56 E-value=2.1e-14 Score=114.33 Aligned_cols=101 Identities=17% Similarity=0.173 Sum_probs=85.6
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC---CCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS---NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
++|||||||+|.++..++++. ..+++++|+ +.+++.+++++. ...++.++.+|..+. . ..+||+|++..++|
T Consensus 83 ~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~--~-p~~~D~v~~~~vLh 158 (256)
T d1qzza2 83 RHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP--L-PVTADVVLLSFVLL 158 (256)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC--C-SCCEEEEEEESCGG
T ss_pred CEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccc--c-cccchhhhcccccc
Confidence 489999999999999999986 348999997 788999988874 234788999988763 2 34699999999999
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
++ +.+....+|++++++|+|||++++.+.
T Consensus 159 ~~-----~d~~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 159 NW-----SDEDALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp GS-----CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cc-----CcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence 98 667788999999999999999998764
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=7.7e-15 Score=114.54 Aligned_cols=107 Identities=16% Similarity=0.202 Sum_probs=84.6
Q ss_pred HHHHHhh---CCCCCCcEEEEccCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHcC-------CCCCcEEEEcccc
Q 026558 37 APLIKLY---VPSHHQRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYS-------NRPQLKYIKMDVR 104 (237)
Q Consensus 37 ~~~l~~~---~~~~~~~iLdlG~G~G~~~~~~~~~-~-~~~~~~vD~s~~~~~~a~~~~~-------~~~~~~~~~~d~~ 104 (237)
..+++.+ +.++ .+|||+|||+|..+..+++. + ..+|+++|+++++++.|++++. ...++.+..+|..
T Consensus 64 a~~le~L~~~l~~g-~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~ 142 (224)
T d1i1na_ 64 AYALELLFDQLHEG-AKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGR 142 (224)
T ss_dssp HHHHHHTTTTSCTT-CEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGG
T ss_pred HHHHHHHhhccCCC-CeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecc
Confidence 4555544 2333 39999999999999888875 2 3499999999999999998874 1347889999998
Q ss_pred ccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 105 QMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 105 ~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
... ...+.||+|++...++++ .+.+.+.|+|||++++...
T Consensus 143 ~~~-~~~~~fD~I~~~~~~~~i-------------p~~l~~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 143 MGY-AEEAPYDAIHVGAAAPVV-------------PQALIDQLKPGGRLILPVG 182 (224)
T ss_dssp GCC-GGGCCEEEEEECSBBSSC-------------CHHHHHTEEEEEEEEEEES
T ss_pred ccc-chhhhhhhhhhhcchhhc-------------CHHHHhhcCCCcEEEEEEc
Confidence 876 567899999999888776 1347889999999998653
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.53 E-value=1.5e-14 Score=115.11 Aligned_cols=97 Identities=21% Similarity=0.314 Sum_probs=82.8
Q ss_pred CcEEEEccCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHcC-----CCCCcEEEEccccccccccCCCccEEEecc
Q 026558 49 QRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYS-----NRPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-~-~~~~~~vD~s~~~~~~a~~~~~-----~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~ 121 (237)
.+|||+|||+|.++..+++. + ..+++++|+++++++.|+++++ ...++.+.++|+.+.+ ++++.||.|+++
T Consensus 98 ~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~-~~~~~fDaV~ld- 175 (264)
T d1i9ga_ 98 ARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE-LPDGSVDRAVLD- 175 (264)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC-CCTTCEEEEEEE-
T ss_pred CEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc-ccCCCcceEEEe-
Confidence 49999999999999999986 3 3499999999999999999874 2358999999998876 788999999873
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+ .++..++.++.++|||||++++...
T Consensus 176 ----l-------p~P~~~l~~~~~~LkpGG~lv~~~P 201 (264)
T d1i9ga_ 176 ----M-------LAPWEVLDAVSRLLVAGGVLMVYVA 201 (264)
T ss_dssp ----S-------SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred ----c-------CCHHHHHHHHHhccCCCCEEEEEeC
Confidence 3 4456789999999999999988663
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.2e-14 Score=119.81 Aligned_cols=113 Identities=10% Similarity=0.083 Sum_probs=87.8
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC-----------CCCCcEEEEccc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS-----------NRPQLKYIKMDV 103 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~-----------~~~~~~~~~~d~ 103 (237)
+..+++.....+..+|||+|||+|..+..++... ..+++|+|+|+.+++.|+++.+ ...++.++++|+
T Consensus 140 ~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~ 219 (328)
T d1nw3a_ 140 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF 219 (328)
T ss_dssp HHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT
T ss_pred HHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc
Confidence 4566666544444599999999999999988764 4479999999999999987642 235799999999
Q ss_pred cccccccCC--CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 104 RQMDEFQTG--SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 104 ~~~~~~~~~--~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+.+ +.+. ..|+|+++..+ +. .+....+.++++.|||||+++...
T Consensus 220 ~~~~-~~~~~~~advi~~~~~~-f~-------~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 220 LSEE-WRERIANTSVIFVNNFA-FG-------PEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp TSHH-HHHHHHHCSEEEECCTT-TC-------HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred cccc-cccccCcceEEEEccee-cc-------hHHHHHHHHHHHhCCCCcEEEEec
Confidence 9876 5443 35788876543 44 677889999999999999998754
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.51 E-value=2.9e-14 Score=117.60 Aligned_cols=102 Identities=19% Similarity=0.228 Sum_probs=83.9
Q ss_pred CCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC---CCCCcEEEEccccccccccCCCccEEEeccc
Q 026558 46 SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS---NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (237)
Q Consensus 46 ~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~ 122 (237)
++. +|||||||+|.++..+++.|..+|+++|.|+ +++.|+++.. ...++.++.+|+.+++ ++.++||+|++...
T Consensus 38 ~~~-~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~-~~~~~~D~i~se~~ 114 (328)
T d1g6q1_ 38 KDK-IVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVH-LPFPKVDIIISEWM 114 (328)
T ss_dssp TTC-EEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSSSCEEEEEECCC
T ss_pred CcC-EEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhcc-CcccceeEEEEEec
Confidence 344 9999999999999999999877999999997 5566766552 2357899999999987 77899999999877
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEE
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 154 (237)
.+.+ ........++..+.++|||||+++
T Consensus 115 ~~~~----~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 115 GYFL----LYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp BTTB----STTCCHHHHHHHHHHHEEEEEEEE
T ss_pred ceee----ccchhHHHHHHHHHhccCCCeEEE
Confidence 6655 344667888999999999999985
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=5.1e-14 Score=115.20 Aligned_cols=102 Identities=20% Similarity=0.193 Sum_probs=82.2
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
++|||||||+|.++..+++.|..+|+++|.|+.+...++.... ...++.++.+|+.++. ++.++||+|++....+..
T Consensus 37 ~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~-~~~~~~D~Ivse~~~~~~ 115 (311)
T d2fyta1 37 KVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVH-LPVEKVDVIISEWMGYFL 115 (311)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSCSCEEEEEECCCBTTB
T ss_pred CEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhc-CccccceEEEEeeeeeec
Confidence 3899999999999999999987799999999988754443332 2357899999999987 778899999997665554
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEE
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 155 (237)
........++....++|+|||+++-
T Consensus 116 ----~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 116 ----LFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp ----TTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred ----ccccccHHHHHHHHhcCCCCcEEec
Confidence 2334567788888999999999873
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.49 E-value=5.2e-14 Score=115.43 Aligned_cols=100 Identities=17% Similarity=0.206 Sum_probs=81.5
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHc--CC-CCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKY--SN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~--~~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
++|||||||+|.++..+++.|..+|+++|.|+.+ ..+++.. .+ ..++.++++|+.+++ ++.++||+|++....+.
T Consensus 35 ~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~~~~-~~~~~~D~ivs~~~~~~ 112 (316)
T d1oria_ 35 KVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEEVE-LPVEKVDIIISEWMGYC 112 (316)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTTTCC-CSSSCEEEEEECCCBBT
T ss_pred CEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHHHcc-cccceeEEEeeeeeeee
Confidence 3899999999999999999986689999999865 4444443 22 347999999999987 77889999999766655
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 154 (237)
+ ........++..+.++|+|||.++
T Consensus 113 l----~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 113 L----FYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp B----TBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred e----ccHHHHHHHHHHHHhcCCCCeEEE
Confidence 5 234567889999999999999986
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.47 E-value=1.5e-13 Score=109.65 Aligned_cols=98 Identities=14% Similarity=0.226 Sum_probs=78.6
Q ss_pred CCCcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccccCCCccEEEecc
Q 026558 47 HHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (237)
Q Consensus 47 ~~~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~ 121 (237)
++.+|||+|||+|.++..+++.. .++++++|+++++++.|+++++. ..++.+...|+... +....||.|+..
T Consensus 103 pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~--~~~~~~D~V~~d- 179 (266)
T d1o54a_ 103 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG--FDEKDVDALFLD- 179 (266)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC--CSCCSEEEEEEC-
T ss_pred CCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccc--ccccceeeeEec-
Confidence 33499999999999999999863 35999999999999999999853 24677777776544 456789998763
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+ .++..+++++.++|||||++++...
T Consensus 180 ----~-------p~p~~~l~~~~~~LKpGG~lv~~~P 205 (266)
T d1o54a_ 180 ----V-------PDPWNYIDKCWEALKGGGRFATVCP 205 (266)
T ss_dssp ----C-------SCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred ----C-------CCHHHHHHHHHhhcCCCCEEEEEeC
Confidence 3 4456789999999999999988663
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.46 E-value=8.3e-14 Score=102.19 Aligned_cols=101 Identities=16% Similarity=0.210 Sum_probs=81.9
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|||+|||+|.+++.++.+|..+++++|.++.+++.++++++.. .+++++++|+.+......++||+|+++.++..
T Consensus 16 ~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy~~ 95 (152)
T d2esra1 16 GRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPYAK 95 (152)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSSHH
T ss_pred CeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechhhcc
Confidence 399999999999999999998779999999999999999998532 36899999998754456789999999876432
Q ss_pred eccCCCChHHHHHHHHHHH--HhcCCCcEEEEEE
Q 026558 126 LLCGSNSRQNATQMLKEVW--RVLKDKGVYILVT 157 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~--~~L~pgG~l~~~~ 157 (237)
......++.+. +.|+|+|.+++..
T Consensus 96 --------~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 96 --------ETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp --------HHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred --------chHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 34455666554 5699999998865
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.46 E-value=9.5e-14 Score=114.13 Aligned_cols=127 Identities=17% Similarity=0.111 Sum_probs=96.4
Q ss_pred CcChHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEcccccccc-
Q 026558 33 YPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDE- 108 (237)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~- 108 (237)
....+.++...+.++. +|||+|||+|.+++.++..|..+|+++|+|+.+++.+++++. +. .+++++++|+.+...
T Consensus 132 qr~~r~~~~~~~~~g~-~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~ 210 (324)
T d2as0a2 132 QRENRLALEKWVQPGD-RVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEK 210 (324)
T ss_dssp THHHHHHHGGGCCTTC-EEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHH
T ss_pred hhhHHHHHHhhcCCCC-eeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHH
Confidence 3345667777776666 999999999999999999886699999999999999999984 32 368899999976421
Q ss_pred --ccCCCccEEEeccccceeccC--CCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 109 --FQTGSFDSVVDKGTLDSLLCG--SNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 109 --~~~~~fD~I~~~~~l~~~~~~--~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
....+||+|+++.+....... ........+++..+.++|+|||++++.+.+.
T Consensus 211 ~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 211 LQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp HHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred HHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 246789999998764321000 0012356678999999999999999988654
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.45 E-value=2.6e-13 Score=104.77 Aligned_cols=137 Identities=15% Similarity=0.083 Sum_probs=98.4
Q ss_pred CCCCChhhhHHHhccCCCCce--eecCCcC-hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHH
Q 026558 8 QAYGEPWYWDNRYAHESGPFD--WYQKYPS-LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIE 84 (237)
Q Consensus 8 ~~~~~~~~w~~~y~~~~~~~~--~~~~~~~-~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~ 84 (237)
..|-+.+++...|....-.+. .....+. +..++..+-.+++.+|||||||+|+.+..+++....+++++|+++.+++
T Consensus 36 e~Fvp~~~~~~AY~D~~l~i~~g~~is~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~ 115 (215)
T d1jg1a_ 36 YLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVE 115 (215)
T ss_dssp GGGSCGGGGGGTTSSSCEECSTTCEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHH
T ss_pred hhcCCHHHhhcccccCCcccchhhhhhhhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHH
Confidence 345555565555655422211 1111222 4556666555555599999999999999888763347999999999999
Q ss_pred HHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 85 AMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 85 ~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.|++++. +..|+.+.++|..+.. ...+.||+|++...+..+ + ..+.+.|+|||++++...
T Consensus 116 ~a~~~l~~~g~~nv~~~~gd~~~g~-~~~~pfD~Iiv~~a~~~i-----p--------~~l~~qL~~gGrLv~pv~ 177 (215)
T d1jg1a_ 116 FAKRNLERAGVKNVHVILGDGSKGF-PPKAPYDVIIVTAGAPKI-----P--------EPLIEQLKIGGKLIIPVG 177 (215)
T ss_dssp HHHHHHHHTTCCSEEEEESCGGGCC-GGGCCEEEEEECSBBSSC-----C--------HHHHHTEEEEEEEEEEEC
T ss_pred HHHHHHHHcCCceeEEEECccccCC-cccCcceeEEeecccccC-----C--------HHHHHhcCCCCEEEEEEc
Confidence 9999985 4579999999998865 457889999999888766 1 225678999999988653
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.41 E-value=2.4e-13 Score=108.15 Aligned_cols=107 Identities=9% Similarity=0.117 Sum_probs=86.3
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CC-CCcEEEEccccccccccCCC
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~-~~~~~~~~d~~~~~~~~~~~ 113 (237)
+..+...+.++. +|||+|||+|.+++.+++.+.++++++|+|+.+++.++++++ +. .++.++++|+.++. ..+.
T Consensus 98 r~ri~~~~~~g~-~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~--~~~~ 174 (260)
T d2frna1 98 RVRMAKVAKPDE-LVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP--GENI 174 (260)
T ss_dssp HHHHHHHCCTTC-EEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC--CCSC
T ss_pred HHHHHhhcCCcc-EEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc--cCCC
Confidence 444555666665 999999999999999999886699999999999999999984 32 36899999999885 5678
Q ss_pred ccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 114 fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
||.|+++.+.. ...+++.+.++|++||.+.+..
T Consensus 175 ~D~Ii~~~p~~-----------~~~~l~~a~~~l~~gG~lh~~~ 207 (260)
T d2frna1 175 ADRILMGYVVR-----------THEFIPKALSIAKDGAIIHYHN 207 (260)
T ss_dssp EEEEEECCCSS-----------GGGGHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEECCCCc-----------hHHHHHHHHhhcCCCCEEEEEe
Confidence 99998864422 2456788899999999987654
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.41 E-value=9.5e-13 Score=100.05 Aligned_cols=70 Identities=23% Similarity=0.384 Sum_probs=61.8
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
++|||+|||+|.+++.++..+..+++++|+++.+++.|+++. .+++++++|+.+++ ++||+|+++.++..
T Consensus 50 k~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~---~~~~~~~~D~~~l~----~~fD~Vi~NPPfg~ 119 (197)
T d1ne2a_ 50 RSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC---GGVNFMVADVSEIS----GKYDTWIMNPPFGS 119 (197)
T ss_dssp SEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC---TTSEEEECCGGGCC----CCEEEEEECCCC--
T ss_pred CEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc---ccccEEEEehhhcC----CcceEEEeCcccch
Confidence 499999999999999999988768999999999999999997 57899999998764 68999999988754
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.40 E-value=7.4e-13 Score=105.51 Aligned_cols=146 Identities=14% Similarity=0.085 Sum_probs=97.8
Q ss_pred ChhhhHHHhccCCCCceeecCCcChHHHHHhhC-CCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHc
Q 026558 12 EPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYV-PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKY 90 (237)
Q Consensus 12 ~~~~w~~~y~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~ 90 (237)
.+.||...+....+.+.-+...+.+.+.+.... ..+..+|+|+|||+|..+..+++....+++++|+|+.+++.|++|+
T Consensus 74 ~~~F~~~~f~v~~~vlIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na 153 (271)
T d1nv8a_ 74 EKEFMGLSFLVEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNA 153 (271)
T ss_dssp EEEETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHH
T ss_pred cEEEeeeEEEEecCccCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHH
Confidence 345666666666666552222222333322222 2222489999999999999998876669999999999999999998
Q ss_pred CC---CCCcEEEEccccccccccCCCccEEEeccccc----------------eeccCCCChHHHHHHHHHHHHhcCCCc
Q 026558 91 SN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD----------------SLLCGSNSRQNATQMLKEVWRVLKDKG 151 (237)
Q Consensus 91 ~~---~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~----------------~~~~~~~~~~~~~~~l~~~~~~L~pgG 151 (237)
+. ...+.+..+|..+......++||+|+++.+.- .++++.++......++ .+.|+|||
T Consensus 154 ~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~---~~~L~~~G 230 (271)
T d1nv8a_ 154 ERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFF---GRYDTSGK 230 (271)
T ss_dssp HHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHH---HHCCCTTC
T ss_pred HHcCCCceeEEeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHH---HHhcCCCC
Confidence 42 23567788888775423457899999997631 1123344555666664 46899999
Q ss_pred EEEEEEcCC
Q 026558 152 VYILVTYGA 160 (237)
Q Consensus 152 ~l~~~~~~~ 160 (237)
.+++.....
T Consensus 231 ~l~~Eig~~ 239 (271)
T d1nv8a_ 231 IVLMEIGED 239 (271)
T ss_dssp EEEEECCTT
T ss_pred EEEEEECHH
Confidence 988876433
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.39 E-value=4.2e-13 Score=109.89 Aligned_cols=111 Identities=14% Similarity=0.089 Sum_probs=85.8
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccc---ccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~---~~~~~fD~I~~~~~l 123 (237)
.+|||++||+|.+++.++..+ .+|+++|+|+.+++.|+++++ +..+++++++|+.+... ...++||+|+++.+.
T Consensus 147 ~rVLDl~~gtG~~s~~~a~g~-~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~ 225 (318)
T d1wxxa2 147 ERALDVFSYAGGFALHLALGF-REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPA 225 (318)
T ss_dssp EEEEEETCTTTHHHHHHHHHE-EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred CeeeccCCCCcHHHHHHHhcC-CcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCCc
Confidence 399999999999999988654 499999999999999999984 44578999999977431 345789999998764
Q ss_pred ceeccCC--CChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 124 DSLLCGS--NSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 124 ~~~~~~~--~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
....... .......+++..+.++|+|||.+++.+.+.
T Consensus 226 ~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~ 264 (318)
T d1wxxa2 226 FAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 264 (318)
T ss_dssp SCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 3210000 112355678999999999999999988654
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=7.9e-13 Score=108.08 Aligned_cols=107 Identities=18% Similarity=0.280 Sum_probs=78.5
Q ss_pred HHHhhCCCCCCcEEEEccCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHcCC-------------CCCcEEEEccc
Q 026558 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSN-------------RPQLKYIKMDV 103 (237)
Q Consensus 39 ~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~-~-~~~~~~vD~s~~~~~~a~~~~~~-------------~~~~~~~~~d~ 103 (237)
++..+-..++.+|||+|||+|.++..+++. + ..+|+++|+++++++.|+++++. ..++.+...|+
T Consensus 90 Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di 169 (324)
T d2b25a1 90 ILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI 169 (324)
T ss_dssp HHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCT
T ss_pred HHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecch
Confidence 333333333349999999999999999986 2 34999999999999999988631 24789999999
Q ss_pred cccc-cccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 104 RQMD-EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 104 ~~~~-~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+.. .++...||.|+.+.+ ++..++.++.++|||||++++..
T Consensus 170 ~~~~~~~~~~~fD~V~LD~p------------~P~~~l~~~~~~LKpGG~lv~~~ 212 (324)
T d2b25a1 170 SGATEDIKSLTFDAVALDML------------NPHVTLPVFYPHLKHGGVCAVYV 212 (324)
T ss_dssp TCCC-------EEEEEECSS------------STTTTHHHHGGGEEEEEEEEEEE
T ss_pred hhcccccCCCCcceEeecCc------------CHHHHHHHHHHhccCCCEEEEEe
Confidence 7654 245678999987432 23457999999999999998765
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.36 E-value=1e-12 Score=107.33 Aligned_cols=118 Identities=14% Similarity=0.111 Sum_probs=89.4
Q ss_pred hhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--C--CCCcEEEEcccccccc---ccCCCc
Q 026558 42 LYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--N--RPQLKYIKMDVRQMDE---FQTGSF 114 (237)
Q Consensus 42 ~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~--~~~~~~~~~d~~~~~~---~~~~~f 114 (237)
....++. +|||++||+|.+++.++..+..+|+++|+|+.+++.++++++ + ..+++++++|+.+... ...++|
T Consensus 140 ~~~~~g~-~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~f 218 (317)
T d2b78a2 140 NGSAAGK-TVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTY 218 (317)
T ss_dssp HTTTBTC-EEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred HHhhCCC-ceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCC
Confidence 3334454 999999999999999888876689999999999999999984 2 2478999999976531 235689
Q ss_pred cEEEeccccceec--cCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 115 DSVVDKGTLDSLL--CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 115 D~I~~~~~l~~~~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
|+|+++.+--.-- .-.....+..++++.+.++|+|||++++.+.+.
T Consensus 219 D~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~ 266 (317)
T d2b78a2 219 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 266 (317)
T ss_dssp EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 9999986521100 000123467789999999999999999988654
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.35 E-value=1e-12 Score=98.13 Aligned_cols=111 Identities=14% Similarity=0.189 Sum_probs=78.5
Q ss_pred HHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEcccccc---ccccCCC
Q 026558 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQM---DEFQTGS 113 (237)
Q Consensus 38 ~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~---~~~~~~~ 113 (237)
.++...+..+. +|||+|||+|.++++++.+|. +++++|+|+.+++.++++++. ..+.++...+.... ......+
T Consensus 33 ~~l~~~~~~g~-~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (171)
T d1ws6a1 33 DYLRLRYPRRG-RFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGER 110 (171)
T ss_dssp HHHHHHCTTCC-EEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCC
T ss_pred HHhhccccCCC-eEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCc
Confidence 34555555565 999999999999999999986 899999999999999999852 12345665555432 1134678
Q ss_pred ccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 114 fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
||+|+++.+++.- -.+....+++ ..+|+|||++++..
T Consensus 111 fD~If~DPPY~~~-----~~~~l~~l~~--~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 111 FTVAFMAPPYAMD-----LAALFGELLA--SGLVEAGGLYVLQH 147 (171)
T ss_dssp EEEEEECCCTTSC-----TTHHHHHHHH--HTCEEEEEEEEEEE
T ss_pred cceeEEccccccC-----HHHHHHHHHH--cCCcCCCeEEEEEe
Confidence 9999999775421 1123333332 35799999988765
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.35 E-value=2.8e-12 Score=97.19 Aligned_cols=129 Identities=16% Similarity=0.273 Sum_probs=100.0
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccc----cc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMD----EF 109 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~----~~ 109 (237)
+.+++..+.+.+++.+||++||+|..+..+++.. ..+++|+|.++.+++.|+++++. ..++.++++++.++. .+
T Consensus 12 l~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~ 91 (192)
T d1m6ya2 12 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTL 91 (192)
T ss_dssp HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHT
T ss_pred HHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHc
Confidence 4556666666555699999999999999999874 45999999999999999999864 357899999987754 24
Q ss_pred cCCCccEEEeccccceec--cCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchhh
Q 026558 110 QTGSFDSVVDKGTLDSLL--CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYR 164 (237)
Q Consensus 110 ~~~~fD~I~~~~~l~~~~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~ 164 (237)
..++||.|+.+..+.... ....+.......|..+.++|+|||++++.+++....+
T Consensus 92 ~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr 148 (192)
T d1m6ya2 92 GIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDR 148 (192)
T ss_dssp TCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHH
T ss_pred CCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHH
Confidence 467899998875542210 1113446788899999999999999999998876543
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.35 E-value=1.5e-11 Score=93.97 Aligned_cols=74 Identities=18% Similarity=0.339 Sum_probs=63.4
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+|||+|||+|.+++.++..+..+++|+|+++.+++.+++++.. ..+.++..+|+..+. ++||+|+++.++...
T Consensus 48 ~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~----~~fD~Vi~nPP~~~~ 122 (201)
T d1wy7a1 48 KVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN----SRVDIVIMNPPFGSQ 122 (201)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC----CCCSEEEECCCCSSS
T ss_pred CEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhC----CcCcEEEEcCccccc
Confidence 49999999999999999988866999999999999999999853 246788999987764 679999999887543
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.34 E-value=3.2e-12 Score=107.14 Aligned_cols=114 Identities=8% Similarity=0.055 Sum_probs=81.3
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC-----------CCCcEE-EEcc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN-----------RPQLKY-IKMD 102 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~-----------~~~~~~-~~~d 102 (237)
+.++++..-..++.+|||||||+|..+..++... ..+++|||+|+.+++.|+++... .....+ ..++
T Consensus 205 i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~ 284 (406)
T d1u2za_ 205 LSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 284 (406)
T ss_dssp HHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeec
Confidence 5666666544444499999999999999998763 44899999999999999987631 112233 3344
Q ss_pred cccccc--ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 103 VRQMDE--FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 103 ~~~~~~--~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
..+.+. ..-..+|+|+++.. .+. .+....|.++++.|||||+++...
T Consensus 285 f~~~~~~d~~~~~adVV~inn~-~f~-------~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 285 FVDNNRVAELIPQCDVILVNNF-LFD-------EDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp STTCHHHHHHGGGCSEEEECCT-TCC-------HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred hhhccccccccccceEEEEecc-cCc-------hHHHHHHHHHHHhcCCCcEEEEec
Confidence 433221 11245789988753 344 788999999999999999998754
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.34 E-value=8.2e-13 Score=102.63 Aligned_cols=108 Identities=16% Similarity=0.178 Sum_probs=83.2
Q ss_pred hHHHHHhh---CCCCCCcEEEEccCCchhHHHHHHc----C---CCeEEEEeCCHHHHHHHHHHcC-------CCCCcEE
Q 026558 36 LAPLIKLY---VPSHHQRILIVGCGNSAFSEGMVDD----G---YEDVVNVDISSVVIEAMMKKYS-------NRPQLKY 98 (237)
Q Consensus 36 ~~~~l~~~---~~~~~~~iLdlG~G~G~~~~~~~~~----~---~~~~~~vD~s~~~~~~a~~~~~-------~~~~~~~ 98 (237)
...+++.+ +.++ .+|||+|||+|+.+..+++. + ..+|+++|+++++++.|++++. +..++.+
T Consensus 67 ~a~~l~~L~~~l~~g-~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~ 145 (223)
T d1r18a_ 67 HAFALEYLRDHLKPG-ARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLI 145 (223)
T ss_dssp HHHHHHHTTTTCCTT-CEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHhhccCCC-CeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEE
Confidence 34555554 3334 49999999999999887764 2 1389999999999999988752 2358999
Q ss_pred EEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 99 IKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 99 ~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
..+|..+.. .+.+.||+|++...+..+ . +.+.+.|+|||++++...
T Consensus 146 ~~~d~~~~~-~~~~~fD~Iiv~~a~~~~-------p------~~l~~~Lk~gG~lV~pvg 191 (223)
T d1r18a_ 146 VEGDGRKGY-PPNAPYNAIHVGAAAPDT-------P------TELINQLASGGRLIVPVG 191 (223)
T ss_dssp EESCGGGCC-GGGCSEEEEEECSCBSSC-------C------HHHHHTEEEEEEEEEEES
T ss_pred Eeccccccc-ccccceeeEEEEeechhc-------h------HHHHHhcCCCcEEEEEEe
Confidence 999998765 457789999999888766 1 246789999999988653
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=2.5e-12 Score=97.02 Aligned_cols=100 Identities=8% Similarity=0.074 Sum_probs=82.1
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
+|||++||+|.++++++.+|..+++.+|.++.+++.++++++ ...++.++..|+.++......+||+|+++.++..
T Consensus 46 ~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~~-- 123 (183)
T d2fpoa1 46 QCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFRR-- 123 (183)
T ss_dssp EEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSST--
T ss_pred hhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcccc--
Confidence 899999999999999999997799999999999999999985 3457889999988765345678999999987542
Q ss_pred cCCCChHHHHHHHHHHHH--hcCCCcEEEEEE
Q 026558 128 CGSNSRQNATQMLKEVWR--VLKDKGVYILVT 157 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~--~L~pgG~l~~~~ 157 (237)
.....++..+.+ +|+++|.+++..
T Consensus 124 ------~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 124 ------GLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp ------TTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred ------chHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 344556666654 699999998865
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.28 E-value=9.8e-12 Score=94.47 Aligned_cols=102 Identities=14% Similarity=0.191 Sum_probs=73.4
Q ss_pred cEEEEccCCchhH----HHHHHcC-----CCeEEEEeCCHHHHHHHHHHcC------CC---------------------
Q 026558 50 RILIVGCGNSAFS----EGMVDDG-----YEDVVNVDISSVVIEAMMKKYS------NR--------------------- 93 (237)
Q Consensus 50 ~iLdlG~G~G~~~----~~~~~~~-----~~~~~~vD~s~~~~~~a~~~~~------~~--------------------- 93 (237)
+|+++|||+|.-. +.+.+.. ..+++|+|+|+.+++.|++..- ..
T Consensus 27 rIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~~~ 106 (193)
T d1af7a2 27 RVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVR 106 (193)
T ss_dssp EEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEEE
T ss_pred EEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccceee
Confidence 9999999999743 3333321 1279999999999999984330 00
Q ss_pred ------CCcEEEEccccccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 94 ------PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 94 ------~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
..+.+...+.......+.+.||+|+|.++|.++ +++...++++++.+.|+|||.|++-
T Consensus 107 ~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf-----~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 107 VRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-----DKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp ECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS-----CHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred hHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhc-----CHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 012333333333221345789999999999998 7788899999999999999988764
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.24 E-value=1.6e-11 Score=99.18 Aligned_cols=112 Identities=14% Similarity=0.071 Sum_probs=83.6
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CC--CCcEEEEcccccccc---ccCCCccEEEecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NR--PQLKYIKMDVRQMDE---FQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~--~~~~~~~~d~~~~~~---~~~~~fD~I~~~~ 121 (237)
.+|||++||+|.+++.++..|. +|++||.|+.+++.|++|+. +. .+++|++.|+.+... .....||+|+++.
T Consensus 134 ~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDP 212 (309)
T d2igta1 134 LKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDP 212 (309)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECC
T ss_pred CeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEECC
Confidence 3999999999999999998876 89999999999999999974 22 368999999987531 2357899999986
Q ss_pred ccceeccCC---CChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 122 TLDSLLCGS---NSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 122 ~l~~~~~~~---~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
+--...... .-..+...++..+.++|+|||.+++.+....
T Consensus 213 P~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~ 255 (309)
T d2igta1 213 PKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSI 255 (309)
T ss_dssp CSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCT
T ss_pred CcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 622110000 0123456677888999999998777665443
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.22 E-value=1.7e-11 Score=92.19 Aligned_cols=101 Identities=16% Similarity=0.221 Sum_probs=81.2
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC---CCCCcEEEEcccccccc---ccCCCccEEEeccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS---NRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGT 122 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~~~---~~~~~fD~I~~~~~ 122 (237)
.+|||++||+|.++++++.+|..+++++|.++.+++.++++++ ...++.+.+.|+.+... ....+||+|+++.+
T Consensus 43 ~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDPP 122 (182)
T d2fhpa1 43 GMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPP 122 (182)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEechh
Confidence 4999999999999999999997799999999999999999984 22478999999976431 23568999999987
Q ss_pred cceeccCCCChHHHHHHHHHHHH--hcCCCcEEEEEE
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWR--VLKDKGVYILVT 157 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~--~L~pgG~l~~~~ 157 (237)
+.. ......++.+.. +|+++|.+++..
T Consensus 123 Y~~--------~~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 123 YAK--------QEIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp GGG--------CCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhh--------hHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 642 334566776654 699999988765
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.18 E-value=4.3e-11 Score=94.07 Aligned_cols=96 Identities=19% Similarity=0.236 Sum_probs=79.2
Q ss_pred CcEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||||||+|.++..++++.+ .+++..|+ |..++ ......+++++.+|+.+. .+ ..|++++..++|..
T Consensus 83 ~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~----~~~~~~ri~~~~gd~~~~--~p--~~D~~~l~~vLh~~- 152 (244)
T d1fp1d2 83 STLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIE----NAPPLSGIEHVGGDMFAS--VP--QGDAMILKAVCHNW- 152 (244)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT----TCCCCTTEEEEECCTTTC--CC--CEEEEEEESSGGGS-
T ss_pred cEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhh----ccCCCCCeEEecCCcccc--cc--cceEEEEehhhhhC-
Confidence 5999999999999999998863 48999997 54443 222336899999998754 23 45999999999998
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+.+....+|++++++|+|||++++.+.
T Consensus 153 ----~de~~~~iL~~~~~aL~pgg~llI~e~ 179 (244)
T d1fp1d2 153 ----SDEKCIEFLSNCHKALSPNGKVIIVEF 179 (244)
T ss_dssp ----CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ----CHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 778889999999999999999999874
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=99.13 E-value=6.3e-11 Score=96.24 Aligned_cols=113 Identities=23% Similarity=0.256 Sum_probs=85.7
Q ss_pred CCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC-------CCCCcEEEEccccccccccCCCcc
Q 026558 44 VPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS-------NRPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 44 ~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~-------~~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
.++.+++||.||.|.|..+..+++.. ..+++++|+++++++.|++.+. ..++++++.+|+.+.....+.+||
T Consensus 74 ~~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD 153 (312)
T d1uira_ 74 THPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD 153 (312)
T ss_dssp HSSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred hCCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCccc
Confidence 34455599999999999999998875 4599999999999999998872 246899999999886534567899
Q ss_pred EEEeccccceeccCC-CChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 116 SVVDKGTLDSLLCGS-NSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+|++..+ +...... ...-...++++.+.+.|+|||++++..
T Consensus 154 vIi~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 154 VVIIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEEEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEeCC-CcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 9998643 1110000 011234789999999999999998864
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=99.11 E-value=6.5e-10 Score=86.58 Aligned_cols=86 Identities=14% Similarity=0.254 Sum_probs=69.0
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccE
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDS 116 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~ 116 (237)
.+++...-.....+|||||||+|.+|..+++.+. +++++|+++.+++.+++++...+++.++.+|+.+++ ++......
T Consensus 11 ~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~-~~~~~~~~ 88 (235)
T d1qama_ 11 DKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFK-FPKNQSYK 88 (235)
T ss_dssp HHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCC-CCSSCCCE
T ss_pred HHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHhhcccchhhhhhhhhhcc-ccccccce
Confidence 3444443333334999999999999999999875 999999999999999999987789999999999886 55555566
Q ss_pred EEeccccc
Q 026558 117 VVDKGTLD 124 (237)
Q Consensus 117 I~~~~~l~ 124 (237)
|+++.+.+
T Consensus 89 vv~NLPYn 96 (235)
T d1qama_ 89 IFGNIPYN 96 (235)
T ss_dssp EEEECCGG
T ss_pred eeeeehhh
Confidence 77776654
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.09 E-value=3.1e-10 Score=90.62 Aligned_cols=109 Identities=17% Similarity=0.303 Sum_probs=84.5
Q ss_pred CCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC------------CCCCcEEEEccccccccccCC
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS------------NRPQLKYIKMDVRQMDEFQTG 112 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~------------~~~~~~~~~~d~~~~~~~~~~ 112 (237)
.+.+++||.||+|.|..+..+++....+++++|+++.+++.|++.+. ..++++++.+|+.... -..+
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l-~~~~ 148 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFI-KNNR 148 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHH-HHCC
T ss_pred CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHH-hccC
Confidence 44445999999999999999988776699999999999999998763 2367899999998765 3467
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+||+|+++.+- .. +....-...++++.+.+.|+|||++++..
T Consensus 149 ~yDvIi~D~~~-~~--~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 149 GFDVIIADSTD-PV--GPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp CEEEEEEECCC-CC-------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCEEEEeCCC-CC--CCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 89999987542 21 11122234689999999999999998876
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.07 E-value=2.3e-10 Score=89.77 Aligned_cols=96 Identities=19% Similarity=0.246 Sum_probs=79.0
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||+|||+|.++..++++. ..++++.|. |..++.+ ....+++++.+|+.+.. ..+|+++...+||.+
T Consensus 82 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~----~~~~rv~~~~gD~f~~~----p~aD~~~l~~vLHdw- 151 (244)
T d1fp2a2 82 ESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL----SGSNNLTYVGGDMFTSI----PNADAVLLKYILHNW- 151 (244)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC----CCBTTEEEEECCTTTCC----CCCSEEEEESCGGGS-
T ss_pred eEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC----cccCceEEEecCcccCC----CCCcEEEEEeecccC-
Confidence 489999999999999999986 349999998 5555433 33468999999997643 357999999999998
Q ss_pred cCCCChHHHHHHHHHHHHhcCCC---cEEEEEEc
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDK---GVYILVTY 158 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pg---G~l~~~~~ 158 (237)
+.++...+|++++++|+|| |++++...
T Consensus 152 ----~d~~~~~iL~~~~~al~pgg~~~~lli~e~ 181 (244)
T d1fp2a2 152 ----TDKDCLRILKKCKEAVTNDGKRGKVTIIDM 181 (244)
T ss_dssp ----CHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred ----ChHHHHHHHHHHHHHcCcccCCcEEEEEEe
Confidence 7788899999999999998 77777653
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.03 E-value=3.9e-10 Score=86.72 Aligned_cols=100 Identities=10% Similarity=0.075 Sum_probs=76.4
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--C-CCCcEEEEccccccc-c----ccCCCccEEE
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--N-RPQLKYIKMDVRQMD-E----FQTGSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~-~~~~~~~~~d~~~~~-~----~~~~~fD~I~ 118 (237)
++|||+|||+|..+.++++.. .++++++|+++.+++.|++++. + ..+++++.+|+.+.. . +..+.||+|+
T Consensus 58 k~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~if 137 (214)
T d2cl5a1 58 SLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVF 137 (214)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEEEE
T ss_pred CEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccceee
Confidence 389999999999999998863 3599999999999999998874 2 246999999997642 1 2356899999
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
..+.-+. ......+.+..++|+|||++++-
T Consensus 138 iD~~~~~--------~~~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 138 LDHWKDR--------YLPDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp ECSCGGG--------HHHHHHHHHHTTCEEEEEEEEES
T ss_pred ecccccc--------cccHHHHHHHhCccCCCcEEEEe
Confidence 8743221 22233577788999999987763
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=5.4e-10 Score=86.12 Aligned_cols=112 Identities=13% Similarity=0.139 Sum_probs=85.9
Q ss_pred hHHHHHhhCC-CCCCcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--C-CCCcEEEEccccccc-c
Q 026558 36 LAPLIKLYVP-SHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--N-RPQLKYIKMDVRQMD-E 108 (237)
Q Consensus 36 ~~~~l~~~~~-~~~~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~-~~~~~~~~~d~~~~~-~ 108 (237)
...++..++. .+.++|||+|||+|..+.++++.- .++++.+|++++..+.|++++. + ...+++..+|+.+.. .
T Consensus 47 ~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~ 126 (219)
T d2avda1 47 QAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDE 126 (219)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchh
Confidence 4455554442 122489999999999999999863 3599999999999999999984 2 347899999986632 1
Q ss_pred ----ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 109 ----FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 109 ----~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...+.||+|+.+.- .......++.+.+.|+|||++++-.
T Consensus 127 ~~~~~~~~~fD~ifiD~d----------k~~y~~~~~~~~~lL~~GGvii~Dn 169 (219)
T d2avda1 127 LLAAGEAGTFDVAVVDAD----------KENCSAYYERCLQLLRPGGILAVLR 169 (219)
T ss_dssp HHHTTCTTCEEEEEECSC----------STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred hhhhcccCCccEEEEeCC----------HHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 23578999998743 2456788899999999999998854
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=99.02 E-value=3e-10 Score=91.20 Aligned_cols=114 Identities=18% Similarity=0.310 Sum_probs=86.3
Q ss_pred CCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC------CCCCcEEEEccccccccccCCCccE
Q 026558 44 VPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS------NRPQLKYIKMDVRQMDEFQTGSFDS 116 (237)
Q Consensus 44 ~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~------~~~~~~~~~~d~~~~~~~~~~~fD~ 116 (237)
.++.+++||-||.|.|..+..++++. ..+++++|+++.+++.|++.+. ..++++++..|+.....-..++||+
T Consensus 86 ~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 165 (295)
T d1inla_ 86 LHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDV 165 (295)
T ss_dssp HSSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEE
T ss_pred hCCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCE
Confidence 34555699999999999999999875 4589999999999999998773 2468999999998865445678999
Q ss_pred EEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 117 I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
|+++.+-... +....-...++++.+.+.|+|||++++....
T Consensus 166 Ii~D~~dp~~--~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s 206 (295)
T d1inla_ 166 IIIDSTDPTA--GQGGHLFTEEFYQACYDALKEDGVFSAETED 206 (295)
T ss_dssp EEEEC------------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEEcCCCCCc--CchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence 9987432111 0011123578999999999999999987643
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=9.4e-10 Score=86.56 Aligned_cols=108 Identities=10% Similarity=0.052 Sum_probs=76.9
Q ss_pred cEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccc-----cccCCCccEEEec
Q 026558 50 RILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMD-----EFQTGSFDSVVDK 120 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~-----~~~~~~fD~I~~~ 120 (237)
+|||+|||+|-++..++... ..+++|+|+|+.+++.|+++++. ..++.+...+..... ....++||+|+|+
T Consensus 64 ~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivsN 143 (250)
T d2h00a1 64 RGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCN 143 (250)
T ss_dssp EEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEEC
T ss_pred eEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEEec
Confidence 89999999999999888764 45999999999999999999842 235666665543321 1245689999999
Q ss_pred cccceeccCC----------------------------CChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 121 GTLDSLLCGS----------------------------NSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 121 ~~l~~~~~~~----------------------------~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.++....... .......+++++....+++.|.+....
T Consensus 144 PPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~i 208 (250)
T d2h00a1 144 PPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCML 208 (250)
T ss_dssp CCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEE
T ss_pred CcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEe
Confidence 8875321000 001246778888888999999886554
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.00 E-value=1e-09 Score=82.36 Aligned_cols=101 Identities=15% Similarity=0.104 Sum_probs=78.6
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC----CCCcEEEEcccccccc--ccCCCccEEEecccc
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN----RPQLKYIKMDVRQMDE--FQTGSFDSVVDKGTL 123 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~----~~~~~~~~~d~~~~~~--~~~~~fD~I~~~~~l 123 (237)
+|||+.||||.++++++++|...++.||.+..+++.++++++. .....+...|+.+... ....+||+|+++.+.
T Consensus 46 ~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDPPY 125 (183)
T d2ifta1 46 ECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPF 125 (183)
T ss_dssp EEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCCS
T ss_pred eEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEechhH
Confidence 8999999999999999999988999999999999999999742 1245666777654321 235579999999886
Q ss_pred ceeccCCCChHHHHHHHHHHHH--hcCCCcEEEEEEc
Q 026558 124 DSLLCGSNSRQNATQMLKEVWR--VLKDKGVYILVTY 158 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~--~L~pgG~l~~~~~ 158 (237)
.. ......++.+.. +|+++|.+++...
T Consensus 126 ~~--------~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 126 HF--------NLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp SS--------CHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hh--------hhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 53 345566676654 7999999988763
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.99 E-value=8.7e-11 Score=92.14 Aligned_cols=89 Identities=15% Similarity=0.222 Sum_probs=73.0
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCcc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
+..+++.........|||||||+|.+|..+++.+. +++++|+++.+++.+++++...++++++++|+.+++ ++...++
T Consensus 18 i~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~-~~~~~~~ 95 (245)
T d1yuba_ 18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQ-FPNKQRY 95 (245)
T ss_dssp HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTT-CCCSSEE
T ss_pred HHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhhccchhhhhhhhhccc-cccceee
Confidence 45566554333334999999999999999999975 999999999999999988877689999999999887 6677778
Q ss_pred EEEecccccee
Q 026558 116 SVVDKGTLDSL 126 (237)
Q Consensus 116 ~I~~~~~l~~~ 126 (237)
.|+++.+.+-.
T Consensus 96 ~vv~NLPY~Is 106 (245)
T d1yuba_ 96 KIVGNIPYHLS 106 (245)
T ss_dssp EEEEECCSSSC
T ss_pred eEeeeeehhhh
Confidence 88888776443
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=8.2e-10 Score=88.33 Aligned_cols=114 Identities=19% Similarity=0.260 Sum_probs=85.8
Q ss_pred hCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC------CCCCcEEEEccccccccccCCCcc
Q 026558 43 YVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS------NRPQLKYIKMDVRQMDEFQTGSFD 115 (237)
Q Consensus 43 ~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~------~~~~~~~~~~d~~~~~~~~~~~fD 115 (237)
...+.+++||-||.|.|..+..+.+.. ..+++++||++.+++.|++.+. ..++++++.+|+.....-..++||
T Consensus 74 ~~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD 153 (285)
T d2o07a1 74 CSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFD 153 (285)
T ss_dssp TTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEE
T ss_pred hhCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCC
Confidence 344455599999999999999999874 5599999999999999998873 247899999999876534567899
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+|++... +.. +....-...++++.+.+.|+|||++++....
T Consensus 154 vIi~D~~-~p~--~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 194 (285)
T d2o07a1 154 VIITDSS-DPM--GPAESLFKESYYQLMKTALKEDGVLCCQGEC 194 (285)
T ss_dssp EEEEECC--------------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEEcCC-CCC--CcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence 9999743 221 1112234567899999999999999987643
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.96 E-value=1.2e-09 Score=86.99 Aligned_cols=111 Identities=18% Similarity=0.254 Sum_probs=87.3
Q ss_pred CCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC------CCCCcEEEEccccccccccCCCccEE
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS------NRPQLKYIKMDVRQMDEFQTGSFDSV 117 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~------~~~~~~~~~~d~~~~~~~~~~~fD~I 117 (237)
.+.+++||-||.|.|..+..++++. ..+++.+||++.+++.|++.+. ..++++++..|+.....-.+++||+|
T Consensus 73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI 152 (274)
T d1iy9a_ 73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (274)
T ss_dssp SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence 4444599999999999999999874 4599999999999999998872 34689999999987653456789999
Q ss_pred EeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+.+.+- .. +....-...++++.+.++|+|||+++....
T Consensus 153 i~D~~~-p~--~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~ 190 (274)
T d1iy9a_ 153 MVDSTE-PV--GPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (274)
T ss_dssp EESCSS-CC--SCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred EEcCCC-CC--CcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence 998542 11 111123467899999999999999998763
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.96 E-value=8.1e-10 Score=89.08 Aligned_cols=111 Identities=18% Similarity=0.281 Sum_probs=83.4
Q ss_pred CCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCC------CCCcEEEEccccccccccCCCccEE
Q 026558 45 PSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDEFQTGSFDSV 117 (237)
Q Consensus 45 ~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~~~~~~~fD~I 117 (237)
++.+++||-||.|.|..+.++++.. ..+++.+|+++.+++.|++.+.. .++++++.+|+........++||+|
T Consensus 104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI 183 (312)
T d2b2ca1 104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI 183 (312)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence 4455599999999999999999875 35999999999999999998742 3689999999987654456789999
Q ss_pred EeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+++.+- .. +....-....+++.+.++|+|||+++....
T Consensus 184 I~D~~d-p~--~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~ 221 (312)
T d2b2ca1 184 ITDSSD-PV--GPAESLFGQSYYELLRDALKEDGILSSQGE 221 (312)
T ss_dssp EECCC----------------HHHHHHHHEEEEEEEEEECC
T ss_pred EEcCCC-CC--CcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence 998542 11 112234567899999999999999998763
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.94 E-value=1.3e-09 Score=89.05 Aligned_cols=108 Identities=14% Similarity=0.179 Sum_probs=78.6
Q ss_pred CcEEEEccCCchhHHHHHHc----C--CCeEEEEeCCHHHHHHHHHHcC-CCCCcEEEEccccccccccCCCccEEEecc
Q 026558 49 QRILIVGCGNSAFSEGMVDD----G--YEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~----~--~~~~~~vD~s~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~ 121 (237)
.+|||.|||+|.++..+.++ . ...++|+|+++.+++.|+.+.. ...+..+..+|..... ...+||+|+++.
T Consensus 119 ~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~vi~NP 196 (328)
T d2f8la1 119 VSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL--LVDPVDVVISDL 196 (328)
T ss_dssp EEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC--CCCCEEEEEEEC
T ss_pred CEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccc--ccccccccccCC
Confidence 38999999999999888653 2 2379999999999999988763 2245667777766543 567899999998
Q ss_pred ccceeccC-----------CCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 122 TLDSLLCG-----------SNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 122 ~l~~~~~~-----------~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
++...... .........++..+.+.|+|||+++++..
T Consensus 197 Py~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 197 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence 87543100 00111234479999999999999888763
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.92 E-value=5.4e-09 Score=78.01 Aligned_cols=125 Identities=13% Similarity=0.215 Sum_probs=94.9
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc----ccC
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE----FQT 111 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~----~~~ 111 (237)
+.+.+..+.+.+++.++|..+|.|..+..+++.. .+++|+|.++.++..+++.. ..++.+++.++.++.. ...
T Consensus 7 l~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai~~a~~~~--~~~~~~~~~~f~~~~~~l~~~~~ 83 (182)
T d1wg8a2 7 YQEALDLLAVRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKGLH--LPGLTVVQGNFRHLKRHLAALGV 83 (182)
T ss_dssp HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHTC--CTTEEEEESCGGGHHHHHHHTTC
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHHHHHhhcc--ccceeEeehHHHHHHHHHHHcCC
Confidence 4556666555555699999999999999999986 49999999999999998764 2588999999887642 345
Q ss_pred CCccEEEeccccceeccC--CCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchh
Q 026558 112 GSFDSVVDKGTLDSLLCG--SNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (237)
Q Consensus 112 ~~fD~I~~~~~l~~~~~~--~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 163 (237)
+.+|.|+.+..+.....+ ..+.......|+...+.|++||++++.+++....
T Consensus 84 ~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed 137 (182)
T d1wg8a2 84 ERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLED 137 (182)
T ss_dssp SCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHH
T ss_pred CccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchh
Confidence 789999987654332111 1233456678999999999999999999876543
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.92 E-value=1.2e-09 Score=84.56 Aligned_cols=99 Identities=13% Similarity=0.082 Sum_probs=79.9
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--C-CCCcEEEEccccccc-cc-----cCCCccEE
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--N-RPQLKYIKMDVRQMD-EF-----QTGSFDSV 117 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~-~~~~~~~~~d~~~~~-~~-----~~~~fD~I 117 (237)
++|||+|+++|..+.++++.. .++++.+|.+++..+.|++++. + ..+++++.+|+.+.. .+ ..++||+|
T Consensus 61 k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~i 140 (227)
T d1susa1 61 KNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFI 140 (227)
T ss_dssp CEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBSEE
T ss_pred CcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCceeEE
Confidence 489999999999999999753 3599999999999999999984 2 236899999997642 11 25689999
Q ss_pred EeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
|.+.-= .....+++.+.+.|+|||++++-.
T Consensus 141 FiDa~k----------~~y~~~~e~~~~ll~~gGiii~DN 170 (227)
T d1susa1 141 FVDADK----------DNYLNYHKRLIDLVKVGGVIGYDN 170 (227)
T ss_dssp EECSCS----------TTHHHHHHHHHHHBCTTCCEEEET
T ss_pred Eeccch----------hhhHHHHHHHHhhcCCCcEEEEcc
Confidence 987532 456788999999999999998753
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.90 E-value=3.1e-09 Score=85.17 Aligned_cols=113 Identities=17% Similarity=0.320 Sum_probs=87.7
Q ss_pred hCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC------CCCCcEEEEcccccccc-ccCCCc
Q 026558 43 YVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS------NRPQLKYIKMDVRQMDE-FQTGSF 114 (237)
Q Consensus 43 ~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~------~~~~~~~~~~d~~~~~~-~~~~~f 114 (237)
..++.+++||-||.|.|..+.++++.. ..+++++|+++++++.|++.+. ..++++++.+|+...-. ..+++|
T Consensus 76 ~~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~y 155 (290)
T d1xj5a_ 76 CSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSY 155 (290)
T ss_dssp TTSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCE
T ss_pred hhCCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCc
Confidence 344555699999999999999999875 3589999999999999998762 24789999999987542 345689
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
|+|+.+.+ +.. +....-...++++.+.++|+|||++++...
T Consensus 156 DvIi~D~~-dp~--~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 196 (290)
T d1xj5a_ 156 DAVIVDSS-DPI--GPAKELFEKPFFQSVARALRPGGVVCTQAE 196 (290)
T ss_dssp EEEEECCC-CTT--SGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred cEEEEcCC-CCC--CcchhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence 99998744 211 112233567899999999999999999764
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.89 E-value=4.5e-09 Score=82.27 Aligned_cols=96 Identities=23% Similarity=0.284 Sum_probs=76.7
Q ss_pred CcEEEEccCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|||||||+|.++..++++.+ .++++.|+.+ .++. ....++++++.+|+.+. .+ ..|+++...++|..
T Consensus 83 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~----~~~~~r~~~~~~d~~~~--~P--~ad~~~l~~vlh~~- 152 (243)
T d1kyza2 83 KSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIED----APSYPGVEHVGGDMFVS--IP--KADAVFMKWICHDW- 152 (243)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTT----CCCCTTEEEEECCTTTC--CC--CCSCEECSSSSTTS-
T ss_pred cEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhh----cccCCceEEeccccccc--CC--CcceEEEEEEeecC-
Confidence 4899999999999999999863 4999999854 3322 22336899999998763 23 35778888888887
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+.++...+|++++++|+|||++++...
T Consensus 153 ----~d~~~~~iL~~~~~al~pgg~~li~d~ 179 (243)
T d1kyza2 153 ----SDEHCLKFLKNCYEALPDNGKVIVAEC 179 (243)
T ss_dssp ----CHHHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred ----CHHHHHHHHHHHHHhcCCCceEEEEEE
Confidence 778889999999999999999988763
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.77 E-value=4.1e-09 Score=80.95 Aligned_cols=114 Identities=18% Similarity=0.229 Sum_probs=77.7
Q ss_pred hHHHHHhhCCC-CCCcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCC
Q 026558 36 LAPLIKLYVPS-HHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTG 112 (237)
Q Consensus 36 ~~~~l~~~~~~-~~~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~ 112 (237)
+.+++-..+.. .+.+|||.|||+|.++..+.+.. ...++|+|+++..++.+ ....+.++|..... ...
T Consensus 7 i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~-------~~~~~~~~~~~~~~--~~~ 77 (223)
T d2ih2a1 7 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------PWAEGILADFLLWE--PGE 77 (223)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-------TTEEEEESCGGGCC--CSS
T ss_pred HHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc-------ccceeeeeehhccc--ccc
Confidence 44444444443 33599999999999998887652 34799999998654332 23467788877664 457
Q ss_pred CccEEEeccccceeccCC----------------------CChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 113 SFDSVVDKGTLDSLLCGS----------------------NSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~----------------------~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.||+|+++.++....... ........++..+.+.|++||++.++..
T Consensus 78 ~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 78 AFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp CEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 899999998764321100 0001234578899999999999988764
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=1.6e-07 Score=77.21 Aligned_cols=97 Identities=12% Similarity=0.240 Sum_probs=73.4
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccc---ccCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~---~~~~~fD~I~~~~~l 123 (237)
.+|||+.||+|.++..+++.+. +|+|+|+++.+++.|+++.+ +..|+.|+.+|..+... .....+|+|+.+.+=
T Consensus 214 ~~vlDLycG~G~fsl~La~~~~-~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR 292 (358)
T d1uwva2 214 DRVLDLFCGMGNFTLPLATQAA-SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPAR 292 (358)
T ss_dssp CEEEEESCTTTTTHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCT
T ss_pred ceEEEecccccccchhcccccc-EEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEeCCCC
Confidence 4899999999999999998865 99999999999999999974 56789999999876421 235679999988553
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.-+ ...++.+.+. +|.-+++++.
T Consensus 293 ~G~----------~~~~~~l~~~-~~~~ivYVSC 315 (358)
T d1uwva2 293 AGA----------AGVMQQIIKL-EPIRIVYVSC 315 (358)
T ss_dssp TCC----------HHHHHHHHHH-CCSEEEEEES
T ss_pred ccH----------HHHHHHHHHc-CCCEEEEEeC
Confidence 222 3455666554 5665555544
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=4.2e-07 Score=71.90 Aligned_cols=84 Identities=18% Similarity=0.290 Sum_probs=65.8
Q ss_pred HHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCC---CCcEEEEccccccccccCCC
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGS 113 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~ 113 (237)
..+++.........|||+|+|+|.+|..+++.+. +++++|+++.+++.+++.+... .++.++.+|+.+.. + ..
T Consensus 11 ~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~-~--~~ 86 (278)
T d1zq9a1 11 NSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD-L--PF 86 (278)
T ss_dssp HHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC-C--CC
T ss_pred HHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhh-h--hh
Confidence 4444443333334999999999999999999975 9999999999999999988642 47899999998875 3 34
Q ss_pred ccEEEeccccc
Q 026558 114 FDSVVDKGTLD 124 (237)
Q Consensus 114 fD~I~~~~~l~ 124 (237)
++.|+++.+.+
T Consensus 87 ~~~vV~NLPY~ 97 (278)
T d1zq9a1 87 FDTCVANLPYQ 97 (278)
T ss_dssp CSEEEEECCGG
T ss_pred hhhhhcchHHH
Confidence 67888887654
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.60 E-value=5e-08 Score=76.38 Aligned_cols=88 Identities=13% Similarity=0.173 Sum_probs=65.8
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc--cc--C
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE--FQ--T 111 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~--~~--~ 111 (237)
+.+++......+...|||||||+|.+|..+++.+. +++++|+++.+++.++++....+++.++.+|+.++.. +. .
T Consensus 10 ~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~~~~~~~ 88 (252)
T d1qyra_ 10 IDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLD-QLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKM 88 (252)
T ss_dssp HHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCS-CEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCC-ceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhccccccccc
Confidence 34455554443344999999999999999999875 9999999999999999887666789999999987641 11 1
Q ss_pred CCccEEEeccccc
Q 026558 112 GSFDSVVDKGTLD 124 (237)
Q Consensus 112 ~~fD~I~~~~~l~ 124 (237)
+..-.|+.+.+++
T Consensus 89 ~~~~~vvgNlPY~ 101 (252)
T d1qyra_ 89 GQPLRVFGNLPYN 101 (252)
T ss_dssp TSCEEEEEECCTT
T ss_pred CCCeEEEecchHH
Confidence 2233666776654
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.60 E-value=5.1e-07 Score=68.36 Aligned_cols=113 Identities=12% Similarity=0.170 Sum_probs=85.4
Q ss_pred CcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccce
Q 026558 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~ 125 (237)
.+|+|+|+|.|-=++.++-.. ..+++.+|.+..-+..+++-.. +..|+.+++..+.+.. ...+||+|++..+
T Consensus 67 ~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~--~~~~fD~V~sRA~--- 141 (207)
T d1jsxa_ 67 ERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP--SEPPFDGVISRAF--- 141 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC--CCSCEEEEECSCS---
T ss_pred CceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc--cccccceehhhhh---
Confidence 389999999998777776544 3499999999988888777653 3468999999998875 4568999999855
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchhhhhcccCCCCceE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNI 176 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~w~~ 176 (237)
.....+++-+...++++|.+++............. ...|.+
T Consensus 142 --------~~~~~ll~~~~~~l~~~g~~~~~KG~~~~eEl~~~--~~~~~~ 182 (207)
T d1jsxa_ 142 --------ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALL--PEEYQV 182 (207)
T ss_dssp --------SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTS--CTTEEE
T ss_pred --------cCHHHHHHHHHHhcCCCcEEEEECCCCHHHHHHhh--hcCCEE
Confidence 34577888899999999999998754433333322 346654
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.60 E-value=1.4e-07 Score=75.30 Aligned_cols=114 Identities=14% Similarity=0.150 Sum_probs=80.3
Q ss_pred CCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEecccc
Q 026558 47 HHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 47 ~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l 123 (237)
...+|||+++|.|.-+..+++.. ...++++|+++.-++.++++++ +..++.....|.........+.||.|+.+.+.
T Consensus 102 ~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~DaPC 181 (284)
T d1sqga2 102 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPC 181 (284)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECCC
T ss_pred ccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEeccc
Confidence 33499999999999999998865 3489999999999999998874 32344444444433221345789999998765
Q ss_pred ceecc--CCC------C-------hHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 124 DSLLC--GSN------S-------RQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 124 ~~~~~--~~~------~-------~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
..... ..+ + ...+.++|.++.+.|+|||+++..|.+-
T Consensus 182 Sg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~ 233 (284)
T d1sqga2 182 SATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 233 (284)
T ss_dssp CCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred cccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence 32210 000 0 1235678999999999999999988643
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.60 E-value=2.1e-07 Score=75.11 Aligned_cols=111 Identities=9% Similarity=0.025 Sum_probs=83.7
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.+|||++||.|.-+..+++.. ...+++.|+++.-+..++++.+ +..++.+...|....+ .....||.|+.+.+..
T Consensus 118 ~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~-~~~~~fD~ILvDaPCS 196 (313)
T d1ixka_ 118 EIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIG-ELNVEFDKILLDAPCT 196 (313)
T ss_dssp CEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGG-GGCCCEEEEEEECCTT
T ss_pred ceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccc-cccccccEEEEccccc
Confidence 499999999999988887653 3489999999999999888774 3457777778877776 4567899999976643
Q ss_pred eeccCC--------CCh-------HHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 125 SLLCGS--------NSR-------QNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 125 ~~~~~~--------~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
....-. ... ..+.++|.++.+.|+|||+++..|.+-
T Consensus 197 g~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl 247 (313)
T d1ixka_ 197 GSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 247 (313)
T ss_dssp STTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence 221000 111 245568999999999999999988643
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.58 E-value=2.5e-07 Score=68.67 Aligned_cols=102 Identities=12% Similarity=0.176 Sum_probs=74.8
Q ss_pred CcEEEEccCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc-------cccCCCccEEEe
Q 026558 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD-------EFQTGSFDSVVD 119 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~--~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-------~~~~~~fD~I~~ 119 (237)
.+||||||++|.++..+.+.. ...++++|+.+ ....+++.++++|+.+.. .....++|+|++
T Consensus 24 ~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~---------~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlS 94 (180)
T d1ej0a_ 24 MTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP---------MDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMS 94 (180)
T ss_dssp CEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC---------CCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEeccCCcceEEEEeeccccceEEEeeccc---------ccccCCceEeecccccchhhhhhhhhccCcceeEEEe
Confidence 399999999999999888752 35899999866 233468899999997632 124678999999
Q ss_pred ccccceeccCCC------ChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 120 KGTLDSLLCGSN------SRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 120 ~~~l~~~~~~~~------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
++..... +.. +.+.....+.-+.++|++||.+++-.+...
T Consensus 95 D~ap~~s--g~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~ 140 (180)
T d1ej0a_ 95 DMAPNMS--GTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE 140 (180)
T ss_dssp CCCCCCC--SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred cccchhc--ccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCc
Confidence 9876543 211 112334567778899999999999877654
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.55 E-value=2.1e-07 Score=78.35 Aligned_cols=127 Identities=15% Similarity=0.203 Sum_probs=87.1
Q ss_pred eecCCcChHHHHHhhCCC-CCCcEEEEccCCchhHHHHHHcC--------------CCeEEEEeCCHHHHHHHHHHc--C
Q 026558 29 WYQKYPSLAPLIKLYVPS-HHQRILIVGCGNSAFSEGMVDDG--------------YEDVVNVDISSVVIEAMMKKY--S 91 (237)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~-~~~~iLdlG~G~G~~~~~~~~~~--------------~~~~~~vD~s~~~~~~a~~~~--~ 91 (237)
++.+.. +.+++-..+.+ ...+|+|.+||+|.++..+.++. ...+.|+|+++.+...|+.+. .
T Consensus 144 f~TP~~-Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~ 222 (425)
T d2okca1 144 YFTPRP-LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLH 222 (425)
T ss_dssp GCCCHH-HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHT
T ss_pred hccchh-hhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhc
Confidence 344433 44444444433 33599999999999998886641 125999999999999999876 2
Q ss_pred C--CCCcEEEEccccccccccCCCccEEEeccccceeccCC----------CChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 92 N--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGS----------NSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 92 ~--~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~----------~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+ ..+..+...|..... ...+||+|+++.++....... ........++..+.+.|++||++.++..
T Consensus 223 g~~~~~~~i~~~d~l~~~--~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 223 GIGTDRSPIVCEDSLEKE--PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp TCCSSCCSEEECCTTTSC--CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCccccceeecCchhhhh--cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 2 234567777776653 567899999999875331110 1112345689999999999999888763
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.44 E-value=3.7e-07 Score=70.42 Aligned_cols=98 Identities=11% Similarity=0.084 Sum_probs=66.4
Q ss_pred CcEEEEccCCchhHHHHHHc----C-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc---cccCCCccEEEec
Q 026558 49 QRILIVGCGNSAFSEGMVDD----G-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD---EFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~----~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~---~~~~~~fD~I~~~ 120 (237)
.+|||+|++.|..+..+++. + .++++++|+++......... ..++.++.+|..+.. .+....+|.|+..
T Consensus 82 k~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~---~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID 158 (232)
T d2bm8a1 82 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD---MENITLHQGDCSDLTTFEHLREMAHPLIFID 158 (232)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG---CTTEEEEECCSSCSGGGGGGSSSCSSEEEEE
T ss_pred CEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhcc---ccceeeeecccccHHHHHHHHhcCCCEEEEc
Confidence 38999999999877766542 2 45999999987543332222 258999999986543 2345568888877
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+. |.. .....-+ +....|++||++++.+.
T Consensus 159 ~~-H~~-------~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 159 NA-HAN-------TFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp SS-CSS-------HHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred CC-cch-------HHHHHHH-HHhcccCcCCEEEEEcC
Confidence 54 333 3333334 35689999999988663
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=4.7e-06 Score=66.39 Aligned_cols=114 Identities=6% Similarity=0.004 Sum_probs=79.4
Q ss_pred CCCCcEEEEccCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccc--cCCCccEEEe
Q 026558 46 SHHQRILIVGCGNSAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEF--QTGSFDSVVD 119 (237)
Q Consensus 46 ~~~~~iLdlG~G~G~~~~~~~~~--~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~--~~~~fD~I~~ 119 (237)
..+.+|||++||.|.-+..+++. +...++++|+++.-++.++++++ +..++.+...|...+... ..+.||.|+.
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~ 172 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL 172 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEee
Confidence 33349999999999999888764 23489999999999999998874 446888999998776421 2367999999
Q ss_pred ccccceecc----------CCCC-------hHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 120 KGTLDSLLC----------GSNS-------RQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 120 ~~~l~~~~~----------~~~~-------~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
+.+...... ...+ ...+..++..+. .++|||.++..|.+-
T Consensus 173 DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl 229 (293)
T d2b9ea1 173 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL 229 (293)
T ss_dssp CCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred cCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence 866432210 0000 112344666666 479999999988533
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=98.30 E-value=1.2e-06 Score=75.54 Aligned_cols=123 Identities=8% Similarity=-0.021 Sum_probs=79.9
Q ss_pred hHHHHHhhCCC-CCCcEEEEccCCchhHHHHHHcC-------------------CCeEEEEeCCHHHHHHHHHHcC--CC
Q 026558 36 LAPLIKLYVPS-HHQRILIVGCGNSAFSEGMVDDG-------------------YEDVVNVDISSVVIEAMMKKYS--NR 93 (237)
Q Consensus 36 ~~~~l~~~~~~-~~~~iLdlG~G~G~~~~~~~~~~-------------------~~~~~~vD~s~~~~~~a~~~~~--~~ 93 (237)
+.+++-..+.+ ...+|+|.+||+|.++..+.+.- ...++|+|+++.+...|+.+.- +.
T Consensus 152 Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~ 231 (524)
T d2ar0a1 152 LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI 231 (524)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC
T ss_pred hhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcc
Confidence 44444444433 33499999999999998775531 1258999999999999987762 21
Q ss_pred C-----CcEEEEccccccccccCCCccEEEeccccceeccCC-------CChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 94 P-----QLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGS-------NSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 94 ~-----~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~~~-------~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
. ...+...+..........+||+|+++.++....... ........++..+.+.|++||++.++..
T Consensus 232 ~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP 308 (524)
T d2ar0a1 232 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 308 (524)
T ss_dssp CCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEe
Confidence 1 123444444433223457899999998874321000 1112234589999999999999888763
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.26 E-value=1.5e-06 Score=71.58 Aligned_cols=98 Identities=14% Similarity=0.090 Sum_probs=73.3
Q ss_pred CcEEEEccCCchhHHHHH-HcCCCeEEEEeCCHHHHHHHHHHcC--CC---------------CCcEEEEcccccccccc
Q 026558 49 QRILIVGCGNSAFSEGMV-DDGYEDVVNVDISSVVIEAMMKKYS--NR---------------PQLKYIKMDVRQMDEFQ 110 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~-~~~~~~~~~vD~s~~~~~~a~~~~~--~~---------------~~~~~~~~d~~~~~~~~ 110 (237)
.+|||..||+|..++..+ +.+..+|++.|+|+.+++.+++|++ +. ..+.+.+.|+..+....
T Consensus 47 ~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~ 126 (375)
T d2dula1 47 KIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAER 126 (375)
T ss_dssp SEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHS
T ss_pred CEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHhh
Confidence 389999999999999654 4555699999999999999999973 11 12456666665543234
Q ss_pred CCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 111 ~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...||+|..+. +. ....+|+.+.+.++.||.+.+..
T Consensus 127 ~~~fDvIDiDP-fG----------s~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 127 HRYFHFIDLDP-FG----------SPMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp TTCEEEEEECC-SS----------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCcCCcccCCC-CC----------CcHHHHHHHHHHhccCCEEEEEe
Confidence 56799998874 32 23668999999999999998754
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.23 E-value=5.8e-06 Score=63.64 Aligned_cols=101 Identities=15% Similarity=0.115 Sum_probs=77.5
Q ss_pred CcEEEEccCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccc--cCCCccEEEecccc
Q 026558 49 QRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEF--QTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~--~~~~fD~I~~~~~l 123 (237)
.+|+|+|+|.|-=++.++-. ...+++.+|.+..-+...+.-.. +..++.++...+.++... ..++||+|++..+
T Consensus 72 ~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRAv- 150 (239)
T d1xdza_ 72 NTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARAV- 150 (239)
T ss_dssp CEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEECC-
T ss_pred CeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhhh-
Confidence 48999999999877776653 23499999999888887776543 346888999888776421 2468999999854
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.....+++-+...+++||.+++.-...
T Consensus 151 ----------a~l~~ll~~~~~~l~~~g~~i~~KG~~ 177 (239)
T d1xdza_ 151 ----------ARLSVLSELCLPLVKKNGLFVALKAAS 177 (239)
T ss_dssp ----------SCHHHHHHHHGGGEEEEEEEEEEECC-
T ss_pred ----------hCHHHHHHHHhhhcccCCEEEEECCCC
Confidence 455778888999999999998887544
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=98.04 E-value=2.7e-06 Score=65.32 Aligned_cols=115 Identities=11% Similarity=0.075 Sum_probs=67.4
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcC--C-CCC-cEEEEc-cccccccc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS--N-RPQ-LKYIKM-DVRQMDEF 109 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~--~-~~~-~~~~~~-d~~~~~~~ 109 (237)
+..+.....-.+..+|+|||||.|.++..+++.. ...+.|+++--...+ +-.. . ..+ +.+... |+.. .
T Consensus 55 l~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e---~P~~~~~~~~ni~~~~~~~dv~~---l 128 (257)
T d2p41a1 55 LRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE---EPIPMSTYGWNLVRLQSGVDVFF---I 128 (257)
T ss_dssp HHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC---CCCCCCSTTGGGEEEECSCCTTT---S
T ss_pred HHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc---CCccccccccccccchhhhhHHh---c
Confidence 4445555443344499999999999999998875 237777777321000 0000 0 012 222222 2222 3
Q ss_pred cCCCccEEEeccccceeccCCCC--hHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 110 QTGSFDSVVDKGTLDSLLCGSNS--RQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 110 ~~~~fD~I~~~~~l~~~~~~~~~--~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+.+..|+|+|+..-. . +... ......+|+-+.+.|+|||-|++-.+.
T Consensus 129 ~~~~~D~vlcDm~es-s--~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~ 177 (257)
T d2p41a1 129 PPERCDTLLCDIGES-S--PNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 177 (257)
T ss_dssp CCCCCSEEEECCCCC-C--SSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred CCCcCCEEEeeCCCC-C--CCchhhhhhHHHHHHHHHHHcccCCEEEEEECC
Confidence 468899999986532 1 1111 123335788888999999998886654
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.77 E-value=2.7e-05 Score=60.11 Aligned_cols=74 Identities=12% Similarity=0.012 Sum_probs=58.4
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC----C-------CCCcEEEEccccccccccCCCccEEE
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS----N-------RPQLKYIKMDVRQMDEFQTGSFDSVV 118 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~----~-------~~~~~~~~~d~~~~~~~~~~~fD~I~ 118 (237)
+|||.-||.|..+..++..|. +|+++|-++.+...++..+. . ..+++++++|..++..-...+||+|+
T Consensus 91 ~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvIY 169 (250)
T d2oyra1 91 DVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (250)
T ss_dssp CEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEE
T ss_pred EEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEEE
Confidence 899999999999999999985 99999999987666554431 1 12689999998776423356799999
Q ss_pred eccccc
Q 026558 119 DKGTLD 124 (237)
Q Consensus 119 ~~~~l~ 124 (237)
.+.++.
T Consensus 170 lDPMFp 175 (250)
T d2oyra1 170 LDPMFP 175 (250)
T ss_dssp ECCCCC
T ss_pred ECCCCc
Confidence 987664
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.62 E-value=0.00039 Score=50.10 Aligned_cols=96 Identities=14% Similarity=0.054 Sum_probs=64.9
Q ss_pred CCCCCcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccc---------ccccCCCc
Q 026558 45 PSHHQRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM---------DEFQTGSF 114 (237)
Q Consensus 45 ~~~~~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~---------~~~~~~~f 114 (237)
.++. +||-+|||. |..+..+++....+++++|.++.-++.|++... . ..+..+.... .......+
T Consensus 25 ~~g~-~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga---~-~~~~~~~~~~~~~~~~~~~~~~~g~g~ 99 (170)
T d1e3ja2 25 QLGT-TVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGA---D-VTLVVDPAKEEESSIIERIRSAIGDLP 99 (170)
T ss_dssp CTTC-EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC---S-EEEECCTTTSCHHHHHHHHHHHSSSCC
T ss_pred CCCC-EEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCC---c-EEEeccccccccchhhhhhhcccccCC
Confidence 3444 899999986 777777777655699999999999999988642 1 2222222111 00124578
Q ss_pred cEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
|+|+.... ....++.+.++|+++|++++...
T Consensus 100 D~vid~~g-------------~~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 100 NVTIDCSG-------------NEKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp SEEEECSC-------------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred ceeeecCC-------------ChHHHHHHHHHHhcCCceEEEec
Confidence 99987422 13467888999999999988654
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.36 E-value=0.00023 Score=57.08 Aligned_cols=56 Identities=14% Similarity=0.091 Sum_probs=49.5
Q ss_pred cEEEEccCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccc
Q 026558 50 RILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM 106 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~ 106 (237)
.|||+|+|.|.+|..+.+.+ ..+++++|+++...+..++.+.+ .++.++.+|+..+
T Consensus 46 ~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~-~~~~ii~~D~l~~ 102 (322)
T d1i4wa_ 46 KVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG-SPLQILKRDPYDW 102 (322)
T ss_dssp EEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT-SSCEEECSCTTCH
T ss_pred eEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC-CCcEEEeCchhhc
Confidence 79999999999999999874 44899999999999999998864 6799999998764
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=97.35 E-value=0.0015 Score=51.59 Aligned_cols=73 Identities=14% Similarity=0.218 Sum_probs=60.3
Q ss_pred cEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
+||||-||-|.+..-+.+.|+..+.++|+++.+.+.-+.++. ..++.+|+.++....-...|+++...+++.+
T Consensus 2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~----~~~~~~Di~~~~~~~~~~~dll~~g~PCq~f 74 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS----AKLIKGDISKISSDEFPKCDGIIGGPPCQSW 74 (324)
T ss_dssp EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC----SEEEESCTTTSCGGGSCCCSEEEECCCCTTT
T ss_pred eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC----CCCccCChhhCCHhHcccccEEeeccccccc
Confidence 699999999999998888887677899999999999999973 4678899988763334579999998877655
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=97.29 E-value=0.00028 Score=55.86 Aligned_cols=55 Identities=5% Similarity=0.082 Sum_probs=49.3
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN 92 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~ 92 (237)
+..++....+++. .|||.-||+|+.+.++.+.+. +.+|+|++++.++.|++++..
T Consensus 240 ~~rlI~~~s~~gd-iVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 240 PEFFIRMLTEPDD-LVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp HHHHHHHHCCTTC-EEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSC
T ss_pred HHHhhhhcccCCC-EEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHh
Confidence 6777877777776 999999999999999999886 999999999999999999854
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=0.0015 Score=46.96 Aligned_cols=97 Identities=12% Similarity=0.125 Sum_probs=64.3
Q ss_pred CCCCCcEEEEccCC-chhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc-------cccCCCcc
Q 026558 45 PSHHQRILIVGCGN-SAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD-------EFQTGSFD 115 (237)
Q Consensus 45 ~~~~~~iLdlG~G~-G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-------~~~~~~fD 115 (237)
.++. +||-+|||. |.....+++.. ..+++++|.++.-++.|++.-. -.+...+-.+.. .-....+|
T Consensus 25 ~~gd-~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga----~~~~~~~~~~~~~~~~~~~~~~g~g~D 99 (171)
T d1pl8a2 25 TLGH-KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGA----DLVLQISKESPQEIARKVEGQLGCKPE 99 (171)
T ss_dssp CTTC-EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC----SEEEECSSCCHHHHHHHHHHHHTSCCS
T ss_pred CCCC-EEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCC----cccccccccccccccccccccCCCCce
Confidence 3444 899999987 56666666654 4489999999999999987631 122222222211 01245799
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
+|+....- ...++.+.+.+++||++++....
T Consensus 100 vvid~~G~-------------~~~~~~a~~~~~~gG~iv~~G~~ 130 (171)
T d1pl8a2 100 VTIECTGA-------------EASIQAGIYATRSGGTLVLVGLG 130 (171)
T ss_dssp EEEECSCC-------------HHHHHHHHHHSCTTCEEEECSCC
T ss_pred EEEeccCC-------------chhHHHHHHHhcCCCEEEEEecC
Confidence 99874321 34688899999999999886543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.20 E-value=0.00015 Score=52.36 Aligned_cols=100 Identities=17% Similarity=0.127 Sum_probs=63.2
Q ss_pred hCCCCCCcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc-cccccccccCCCccEEEec
Q 026558 43 YVPSHHQRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM-DVRQMDEFQTGSFDSVVDK 120 (237)
Q Consensus 43 ~~~~~~~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~-d~~~~~~~~~~~fD~I~~~ 120 (237)
.+.++. +||-+|+|. |..+..+++....+++++|.+++.++.+++.-.. .++.. +-.+......+.+|+|+..
T Consensus 24 ~~~~g~-~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~----~~i~~~~~~~~~~~~~~~~d~vi~~ 98 (168)
T d1piwa2 24 GCGPGK-KVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGAD----HYIATLEEGDWGEKYFDTFDLIVVC 98 (168)
T ss_dssp TCSTTC-EEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCS----EEEEGGGTSCHHHHSCSCEEEEEEC
T ss_pred CcCCCC-EEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCc----EEeeccchHHHHHhhhcccceEEEE
Confidence 334444 899999985 7777777765445999999999999999876321 22221 1111111234679988874
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
-.-.. ...+....+.|+|+|++++...
T Consensus 99 ~~~~~-----------~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 99 ASSLT-----------DIDFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp CSCST-----------TCCTTTGGGGEEEEEEEEECCC
T ss_pred ecCCc-----------cchHHHHHHHhhccceEEEecc
Confidence 22110 0124567899999999988653
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.19 E-value=0.0011 Score=47.83 Aligned_cols=92 Identities=16% Similarity=0.144 Sum_probs=62.0
Q ss_pred CcEEEEccCC-chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc----cccCCCccEEEeccc
Q 026558 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----EFQTGSFDSVVDKGT 122 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~----~~~~~~fD~I~~~~~ 122 (237)
.+||-+|||. |..+..+++. +...++.+|.++.-++.+++.- -..++..+-.+.. .+.++.+|+|+..-.
T Consensus 30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~G----a~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G 105 (174)
T d1f8fa2 30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLG----ATHVINSKTQDPVAAIKEITDGGVNFALESTG 105 (174)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHT----CSEEEETTTSCHHHHHHHHTTSCEEEEEECSC
T ss_pred CEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcC----CeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCC
Confidence 4899999976 4555566554 5557889999999999998763 2234433222221 133568999987422
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
....++.+.++++|+|++++.-
T Consensus 106 -------------~~~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 106 -------------SPEILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp -------------CHHHHHHHHHTEEEEEEEEECC
T ss_pred -------------cHHHHHHHHhcccCceEEEEEe
Confidence 1346778899999999998764
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.15 E-value=0.0015 Score=47.23 Aligned_cols=96 Identities=13% Similarity=0.220 Sum_probs=64.2
Q ss_pred CCCCCcEEEEccCC-chhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc----cc-cCCCccEE
Q 026558 45 PSHHQRILIVGCGN-SAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----EF-QTGSFDSV 117 (237)
Q Consensus 45 ~~~~~~iLdlG~G~-G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~----~~-~~~~fD~I 117 (237)
.++. +||-+|||. |..+..+++.. ..+++++|.++.-++.+++.-. ..++...-.+.. .. ....+|+|
T Consensus 26 ~~g~-~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa----~~~i~~~~~~~~~~v~~~t~g~G~D~v 100 (174)
T d1jqba2 26 EMGS-SVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGA----TDILNYKNGHIEDQVMKLTNGKGVDRV 100 (174)
T ss_dssp CTTC-CEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTC----SEEECGGGSCHHHHHHHHTTTSCEEEE
T ss_pred CCCC-EEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCc----cccccccchhHHHHHHHHhhccCcceE
Confidence 3444 888899987 77888888765 3489999999999999987632 122221111111 11 23569999
Q ss_pred EeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+..-.- ...+++..++++|+|++++.-.
T Consensus 101 id~~g~-------------~~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 101 IMAGGG-------------SETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp EECSSC-------------TTHHHHHHHHEEEEEEEEECCC
T ss_pred EEccCC-------------HHHHHHHHHHHhcCCEEEEEee
Confidence 875321 2356778899999999988654
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=97.14 E-value=0.00051 Score=52.55 Aligned_cols=53 Identities=9% Similarity=0.075 Sum_probs=46.7
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHc
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKY 90 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~ 90 (237)
+..++.....++. .|||.-||+|+.+.++.+.+- +.+|+|++++.++.|++++
T Consensus 202 ~~~lI~~~s~~gd-~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~y~~~a~~Rl 254 (256)
T d1g60a_ 202 IERIIRASSNPND-LVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVL 254 (256)
T ss_dssp HHHHHHHHCCTTC-EEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCC-EEEECCCCchHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHH
Confidence 5667777767776 999999999999999998886 9999999999999999986
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.06 E-value=0.0018 Score=46.26 Aligned_cols=91 Identities=15% Similarity=0.105 Sum_probs=58.6
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc----cccCCCccEEEecccc
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----EFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~----~~~~~~fD~I~~~~~l 123 (237)
.+||-+|+|. |.....+++....+++++|.++..++.+++.-. ..++..+-.+.. ....+.+++|++...
T Consensus 29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga----~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~~- 103 (166)
T d1llua2 29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGA----SLTVNARQEDPVEAIQRDIGGAHGVLVTAVS- 103 (166)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC----SEEEETTTSCHHHHHHHHHSSEEEEEECCSC-
T ss_pred CEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCc----cccccccchhHHHHHHHhhcCCccccccccc-
Confidence 3888899977 777777777654699999999999999987632 233322222211 011233444443211
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...++...+.|+|+|++++.-
T Consensus 104 -------------~~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 104 -------------NSAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp -------------HHHHHHHHTTEEEEEEEEECC
T ss_pred -------------chHHHHHHHHhcCCcEEEEEE
Confidence 235778899999999998764
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.05 E-value=0.0014 Score=47.58 Aligned_cols=93 Identities=15% Similarity=0.136 Sum_probs=61.5
Q ss_pred CcEEEEccCC-chhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc---ccccc----cc-ccCCCccEEE
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQM----DE-FQTGSFDSVV 118 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~---d~~~~----~~-~~~~~fD~I~ 118 (237)
.+||-+|+|. |.....+++... .+|+++|.++..++.+++.-. ..++.. +..+. .. .....+|+|+
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa----~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvi 105 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA----DLTLNRRETSVEERRKAIMDITHGRGADFIL 105 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC----SEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred CEEEEECCCccchhheecccccccccccccccccccccccccccc----eEEEeccccchHHHHHHHHHhhCCCCceEEe
Confidence 4899999986 777777777643 389999999999999987632 122211 11111 11 1244699998
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
..-.- ...++.+.++|++||++++.-.
T Consensus 106 d~vG~-------------~~~~~~a~~~l~~~G~iv~~G~ 132 (182)
T d1vj0a2 106 EATGD-------------SRALLEGSELLRRGGFYSVAGV 132 (182)
T ss_dssp ECSSC-------------TTHHHHHHHHEEEEEEEEECCC
T ss_pred ecCCc-------------hhHHHHHHHHhcCCCEEEEEee
Confidence 64211 2357778899999999987653
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=97.03 E-value=0.0019 Score=46.27 Aligned_cols=96 Identities=18% Similarity=0.143 Sum_probs=62.8
Q ss_pred CCCCCCcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccc
Q 026558 44 VPSHHQRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (237)
Q Consensus 44 ~~~~~~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~ 122 (237)
+.++. +||-+|+|. |.+...+++....+++++|.+++-++.+++.-. ..++...-.+......+.+|+++..-.
T Consensus 28 ~~~G~-~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGa----d~~i~~~~~~~~~~~~~~~D~vid~~g 102 (168)
T d1uufa2 28 AGPGK-KVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGA----DEVVNSRNADEMAAHLKSFDFILNTVA 102 (168)
T ss_dssp CCTTC-EEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC----SEEEETTCHHHHHTTTTCEEEEEECCS
T ss_pred CCCCC-EEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCC----cEEEECchhhHHHHhcCCCceeeeeee
Confidence 34444 888899976 777777777654588899999998888877632 233322221211123457999887532
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
-. ..++...+.++++|++++..
T Consensus 103 ~~-------------~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 103 AP-------------HNLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp SC-------------CCHHHHHTTEEEEEEEEECC
T ss_pred cc-------------hhHHHHHHHHhcCCEEEEec
Confidence 11 13566788999999998864
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=96.94 E-value=0.0033 Score=49.78 Aligned_cols=97 Identities=16% Similarity=0.130 Sum_probs=68.2
Q ss_pred CcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceecc
Q 026558 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~~ 128 (237)
-+||||-||-|.+...+.+.|...+.++|+++.+++..+.++... .++|+.++....-..+|+++...+++.+..
T Consensus 12 lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~-----~~~Di~~~~~~~~~~~Dll~ggpPCq~fS~ 86 (327)
T d2c7pa1 12 LRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-----PEGDITQVNEKTIPDHDILCAGFPCQAFSI 86 (327)
T ss_dssp CEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-----CBSCGGGSCGGGSCCCSEEEEECCCTTTCT
T ss_pred CeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCC-----CcCchhcCchhhcceeeeeecccccchhhh
Confidence 399999999999999999888767788999999999999998432 247887765333457999999887765531
Q ss_pred CC------CChHHHHHHHHHHHHhcCCC
Q 026558 129 GS------NSRQNATQMLKEVWRVLKDK 150 (237)
Q Consensus 129 ~~------~~~~~~~~~l~~~~~~L~pg 150 (237)
.. .+.......+-++.+.++|.
T Consensus 87 ag~~~g~~d~r~~l~~~~~~~i~~~kP~ 114 (327)
T d2c7pa1 87 SGKQKGFEDSRGTLFFDIARIVREKKPK 114 (327)
T ss_dssp TSCCCGGGSTTSCHHHHHHHHHHHHCCS
T ss_pred hhhhcCCcccchhHHHHHHHHHhccCCc
Confidence 11 11112223334455667886
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.92 E-value=0.0039 Score=44.51 Aligned_cols=92 Identities=16% Similarity=0.207 Sum_probs=63.7
Q ss_pred cEEEEccCC--chhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 50 RILIVGCGN--SAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 50 ~iLdlG~G~--G~~~~~~~~~~~-~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
+|+=+|||. |+++..+.+.++ .+++++|.+++.++.+++.. .+.....+.... .....|+|+..-+
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~----~~~~~~~~~~~~---~~~~~dlIila~p---- 71 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG----IIDEGTTSIAKV---EDFSPDFVMLSSP---- 71 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT----SCSEEESCGGGG---GGTCCSEEEECSC----
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhh----cchhhhhhhhhh---hccccccccccCC----
Confidence 578899987 456666777764 38999999999999999873 222222232222 2346899987543
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+.....+++++.+.++++.+++-...
T Consensus 72 ------~~~~~~vl~~l~~~~~~~~ii~d~~s 97 (171)
T d2g5ca2 72 ------VRTFREIAKKLSYILSEDATVTDQGS 97 (171)
T ss_dssp ------HHHHHHHHHHHHHHSCTTCEEEECCS
T ss_pred ------chhhhhhhhhhhcccccccccccccc
Confidence 36678899999999998876654443
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.87 E-value=0.00092 Score=51.72 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=47.9
Q ss_pred hHHHHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC
Q 026558 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS 91 (237)
Q Consensus 36 ~~~~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~ 91 (237)
+..++.....++. .|||.-||+|+.+.++.+.+- +.+|+|+++...+.|++++.
T Consensus 197 ~~~~I~~~s~~gd-iVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~ 250 (279)
T d1eg2a_ 197 IERLVRALSHPGS-TVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLT 250 (279)
T ss_dssp HHHHHHHHSCTTC-EEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCC-EEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHH
Confidence 5667777777776 999999999999999998886 99999999999999999984
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.83 E-value=0.0037 Score=44.46 Aligned_cols=95 Identities=18% Similarity=0.230 Sum_probs=60.1
Q ss_pred CCCCCCcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc-----cccccCCCccEE
Q 026558 44 VPSHHQRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-----MDEFQTGSFDSV 117 (237)
Q Consensus 44 ~~~~~~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-----~~~~~~~~fD~I 117 (237)
+.++. +||-.|+|. |.....+++....+++++|.++.-++.+++.- ...+.....+ +.....+.+|+|
T Consensus 25 ~~~g~-~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~G-----a~~~~~~~~~~~~~~~~~~~~~~~~~v 98 (168)
T d1rjwa2 25 AKPGE-WVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELG-----ADLVVNPLKEDAAKFMKEKVGGVHAAV 98 (168)
T ss_dssp CCTTC-EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-----CSEEECTTTSCHHHHHHHHHSSEEEEE
T ss_pred CCCCC-EEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcC-----cceecccccchhhhhcccccCCCceEE
Confidence 34444 888899987 66666667665459999999999999998753 1222211111 111123444444
Q ss_pred EeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
++. . -...+..+.++|+|+|++++.-.
T Consensus 99 ~~~-~-------------~~~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 99 VTA-V-------------SKPAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp ESS-C-------------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred eec-C-------------CHHHHHHHHHHhccCCceEeccc
Confidence 432 1 13467889999999999988653
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.80 E-value=0.0046 Score=43.95 Aligned_cols=87 Identities=14% Similarity=0.112 Sum_probs=60.2
Q ss_pred cEEEEccCC--chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 50 ~iLdlG~G~--G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
+|.=||+|. +.++..+.+.++ ++++.|.+++.++.+++.- .+.....+... -...|+|+..-+
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~----~~~~~~~~~~~-----~~~~DiIilavp----- 66 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQ----LVDEAGQDLSL-----LQTAKIIFLCTP----- 66 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTT----SCSEEESCGGG-----GTTCSEEEECSC-----
T ss_pred EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhh----ccceeeeeccc-----ccccccccccCc-----
Confidence 567788886 355667777777 9999999999999887763 12222222221 246799987533
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
.....++++++...++++-+++-.
T Consensus 67 -----~~~~~~vl~~l~~~l~~~~iv~~~ 90 (165)
T d2f1ka2 67 -----IQLILPTLEKLIPHLSPTAIVTDV 90 (165)
T ss_dssp -----HHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred -----Hhhhhhhhhhhhhhcccccceeec
Confidence 366788999999999988876544
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.73 E-value=0.0005 Score=49.38 Aligned_cols=97 Identities=10% Similarity=0.145 Sum_probs=69.4
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.+|+-||+|. |..++..+....+.++.+|.+++.++..+..+.. +++....+-..+. ..-...|+|+..-.+
T Consensus 33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~--~~~~~~~~~~~l~-~~~~~aDivI~aali---- 105 (168)
T d1pjca1 33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS--RVELLYSNSAEIE-TAVAEADLLIGAVLV---- 105 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG--GSEEEECCHHHHH-HHHHTCSEEEECCCC----
T ss_pred cEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc--cceeehhhhhhHH-HhhccCcEEEEeeec----
Confidence 4899999998 7777777776556999999999999998887642 4566555544443 123468999986432
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEE
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 155 (237)
++..-+.-+-+++.+.+|||.+++=
T Consensus 106 ---pG~~aP~lIt~~mv~~Mk~GSVIVD 130 (168)
T d1pjca1 106 ---PGRRAPILVPASLVEQMRTGSVIVD 130 (168)
T ss_dssp ---TTSSCCCCBCHHHHTTSCTTCEEEE
T ss_pred ---CCcccCeeecHHHHhhcCCCcEEEE
Confidence 1223344567889999999998753
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=96.67 E-value=0.0021 Score=49.13 Aligned_cols=108 Identities=10% Similarity=-0.002 Sum_probs=74.8
Q ss_pred cEEEEccCCchhHHHHHHcC-----------------------------------------CCeEEEEeCCHHHHHHHH-
Q 026558 50 RILIVGCGNSAFSEGMVDDG-----------------------------------------YEDVVNVDISSVVIEAMM- 87 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~-----------------------------------------~~~~~~vD~s~~~~~~a~- 87 (237)
.++|..||+|.+.++.+-.. ...++|.|+++.+++.|+
T Consensus 53 ~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A~~ 132 (249)
T d1o9ga_ 53 TLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAARR 132 (249)
T ss_dssp EEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHHHHH
Confidence 79999999999998764310 014678899999988874
Q ss_pred --HHcC--C-CCCcEEEEcccccccc----ccCCCccEEEeccccceeccCC--CChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 88 --KKYS--N-RPQLKYIKMDVRQMDE----FQTGSFDSVVDKGTLDSLLCGS--NSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 88 --~~~~--~-~~~~~~~~~d~~~~~~----~~~~~fD~I~~~~~l~~~~~~~--~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
+++. + ...+.+.+.|+.+... .+....++|+++.+...-.... ...+....+...+.+++.....+++.
T Consensus 133 ~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s~~~it 212 (249)
T d1o9ga_ 133 LRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVT 212 (249)
T ss_dssp HHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred HHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCcEEEEe
Confidence 4542 2 2467888999876542 1346789999999877664322 23456778888889989655566554
Q ss_pred E
Q 026558 157 T 157 (237)
Q Consensus 157 ~ 157 (237)
.
T Consensus 213 ~ 213 (249)
T d1o9ga_ 213 D 213 (249)
T ss_dssp E
T ss_pred C
Confidence 3
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.63 E-value=0.0064 Score=43.56 Aligned_cols=89 Identities=11% Similarity=0.130 Sum_probs=60.5
Q ss_pred CcEEEEcc-C-CchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc-------cccCCCccEEEe
Q 026558 49 QRILIVGC-G-NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD-------EFQTGSFDSVVD 119 (237)
Q Consensus 49 ~~iLdlG~-G-~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-------~~~~~~fD~I~~ 119 (237)
.+||-.|+ | .|..+..+++....++++++.+++.++.+++.-. ..++ |..+.. ......+|+|+.
T Consensus 30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga----~~vi--~~~~~~~~~~i~~~t~~~g~d~v~d 103 (174)
T d1yb5a2 30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGA----HEVF--NHREVNYIDKIKKYVGEKGIDIIIE 103 (174)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC----SEEE--ETTSTTHHHHHHHHHCTTCEEEEEE
T ss_pred CEEEEEeccccccccccccccccCcccccccccccccccccccCc----cccc--ccccccHHHHhhhhhccCCceEEee
Confidence 38999996 3 3677777777655599999999988888886531 1222 222211 023567999987
Q ss_pred ccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
... ...++...++|+|+|+++..-
T Consensus 104 ~~g--------------~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 104 MLA--------------NVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp SCH--------------HHHHHHHHHHEEEEEEEEECC
T ss_pred ccc--------------HHHHHHHHhccCCCCEEEEEe
Confidence 421 235788899999999998753
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.62 E-value=0.0072 Score=43.50 Aligned_cols=93 Identities=14% Similarity=0.056 Sum_probs=64.3
Q ss_pred CcEEEEccCC-chhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccc-c----c-cccCCCccEEEec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-M----D-EFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~----~-~~~~~~fD~I~~~ 120 (237)
.+||-+|||. |..+..+++.. ...++.+|.++.-++.|++.-. ..++...-.+ . . ......+|+++..
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga----~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~ 105 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA----TDCLNPRELDKPVQDVITELTAGGVDYSLDC 105 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC----SEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred CEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCC----CcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence 3899999988 88888888764 4489999999999999888632 1222211111 0 0 1235679999874
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCC-cEEEEEEc
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTY 158 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 158 (237)
-. ....+++..+.+++| |++++.-.
T Consensus 106 ~G-------------~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 106 AG-------------TAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp SC-------------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred cc-------------cchHHHHHHHHhhcCCeEEEecCC
Confidence 22 144688899999996 99988654
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.58 E-value=0.0074 Score=44.27 Aligned_cols=109 Identities=12% Similarity=0.154 Sum_probs=67.0
Q ss_pred hCCCCCCcEEEEccCC-chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccc-ccc----c-ccCCCc
Q 026558 43 YVPSHHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVR-QMD----E-FQTGSF 114 (237)
Q Consensus 43 ~~~~~~~~iLdlG~G~-G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-~~~----~-~~~~~f 114 (237)
.+.++. +||.+|||. |..+..+++. +..+++++|.++..++.|++.- ......... ++. + .....+
T Consensus 22 ~v~~G~-tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~G-----a~~~~~~~~~~~~~~i~~~t~g~g~ 95 (195)
T d1kola2 22 GVGPGS-TVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG-----FEIADLSLDTPLHEQIAALLGEPEV 95 (195)
T ss_dssp TCCTTC-EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT-----CEEEETTSSSCHHHHHHHHHSSSCE
T ss_pred CCCCCC-EEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcc-----ccEEEeCCCcCHHHHHHHHhCCCCc
Confidence 344444 999999988 6566666654 4559999999999999998773 222221111 110 0 134568
Q ss_pred cEEEeccccceeccCC--CChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 115 DSVVDKGTLDSLLCGS--NSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 115 D~I~~~~~l~~~~~~~--~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
|+++..-......... .........++.+.++++|||++++.-
T Consensus 96 D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 96 DCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp EEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred EEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 9999753221110000 001123468999999999999998864
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.56 E-value=0.0046 Score=49.03 Aligned_cols=74 Identities=18% Similarity=0.337 Sum_probs=56.5
Q ss_pred cEEEEccCCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc--cccCCCccEEEeccccce
Q 026558 50 RILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD--EFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~~--~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~--~~~~~~fD~I~~~~~l~~ 125 (237)
+|+||.||.|.+...+...|. ..+.++|+++.+++..+.++ ++..++..|+.++. .++...+|+++...+++.
T Consensus 4 kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~---~~~~~~~~di~~~~~~~~~~~~~Dll~ggpPCq~ 80 (343)
T d1g55a_ 4 RVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF---PHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQP 80 (343)
T ss_dssp EEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC---TTSCEECSCGGGCCHHHHHHHCCSEEEECCC---
T ss_pred EEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC---CCCCcccCchhhCCHhHcCCCCccEEEeeccccc
Confidence 799999999999888877774 24789999999999999887 55677888887654 133457999999888776
Q ss_pred e
Q 026558 126 L 126 (237)
Q Consensus 126 ~ 126 (237)
+
T Consensus 81 f 81 (343)
T d1g55a_ 81 F 81 (343)
T ss_dssp -
T ss_pred c
Confidence 6
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=96.49 E-value=0.0061 Score=49.06 Aligned_cols=111 Identities=12% Similarity=0.065 Sum_probs=71.6
Q ss_pred cEEEEccCCchhHHHHHHc--------------C---CCeEEEEeCCHHHHHHHHHHcCC----CCCc--EEEEcccccc
Q 026558 50 RILIVGCGNSAFSEGMVDD--------------G---YEDVVNVDISSVVIEAMMKKYSN----RPQL--KYIKMDVRQM 106 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~--------------~---~~~~~~vD~s~~~~~~a~~~~~~----~~~~--~~~~~d~~~~ 106 (237)
+|.|+||.+|..+..+.+. . .-++..-|.-..-.+..-+.+.. .+++ .-+.+.+-.-
T Consensus 54 ~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~r 133 (359)
T d1m6ex_ 54 AIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGR 133 (359)
T ss_dssp CCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSSC
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhhh
Confidence 7999999999877433221 1 11666777755444444444421 1122 2244455444
Q ss_pred ccccCCCccEEEeccccceeccCC---------------CC-----------hHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 107 DEFQTGSFDSVVDKGTLDSLLCGS---------------NS-----------RQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 107 ~~~~~~~fD~I~~~~~l~~~~~~~---------------~~-----------~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
. ||.++.++++|...+||+.--+ .+ ..+...+|+.=.+-|+|||++++...+.
T Consensus 134 L-fP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr 212 (359)
T d1m6ex_ 134 L-FPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGR 212 (359)
T ss_dssp C-SCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEEC
T ss_pred c-CCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEecc
Confidence 4 7899999999999999873100 01 2266778999999999999999988665
Q ss_pred c
Q 026558 161 P 161 (237)
Q Consensus 161 ~ 161 (237)
+
T Consensus 213 ~ 213 (359)
T d1m6ex_ 213 R 213 (359)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.46 E-value=0.0047 Score=44.27 Aligned_cols=96 Identities=14% Similarity=0.129 Sum_probs=63.5
Q ss_pred CCCCCcEEEEccCC-chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc---c-ccCCCccEEE
Q 026558 45 PSHHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD---E-FQTGSFDSVV 118 (237)
Q Consensus 45 ~~~~~~iLdlG~G~-G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~---~-~~~~~fD~I~ 118 (237)
.++. .||-+|+|. |.....+++. +...++++|.+++-++.+++... ..++..+-.... . .....+|+|+
T Consensus 31 ~~g~-~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga----~~~i~~~~~~~~~~~~~~~~~g~d~vi 105 (172)
T d1h2ba2 31 YPGA-YVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA----DHVVDARRDPVKQVMELTRGRGVNVAM 105 (172)
T ss_dssp CTTC-EEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTC----SEEEETTSCHHHHHHHHTTTCCEEEEE
T ss_pred CCCC-EEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhccc----ceeecCcccHHHHHHHhhCCCCceEEE
Confidence 3444 899999987 5565666654 55589999999999999887642 233322211111 1 1245699998
Q ss_pred eccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
....- ...++...+.|+++|++++.-.
T Consensus 106 d~~g~-------------~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 106 DFVGS-------------QATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp ESSCC-------------HHHHHHGGGGEEEEEEEEECCC
T ss_pred EecCc-------------chHHHHHHHHHhCCCEEEEEeC
Confidence 75321 3357888999999999988654
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.05 E-value=0.022 Score=40.73 Aligned_cols=95 Identities=11% Similarity=0.082 Sum_probs=59.4
Q ss_pred CcEEEEccCC-chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccc------ccccCCCccEEEec
Q 026558 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM------DEFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~------~~~~~~~fD~I~~~ 120 (237)
.+||-+|||. |.....+++. +..+++++|.++.-++.+++.-. ..++...-.+. .....+.+|+|+..
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa----~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~ 104 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA----TECLNPKDYDKPIYEVICEKTNGGVDYAVEC 104 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTC----SEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCC----cEEEcCCCchhHHHHHHHHhcCCCCcEEEEc
Confidence 3899999987 4555555554 55689999999999999987632 22221111110 00234579999874
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCC-CcEEEEEEcCC
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKD-KGVYILVTYGA 160 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~p-gG~l~~~~~~~ 160 (237)
-.- ...+.+....+++ +|.+++.-...
T Consensus 105 ~g~-------------~~~~~~~~~~~~~~~G~~v~vG~~~ 132 (174)
T d1p0fa2 105 AGR-------------IETMMNALQSTYCGSGVTVVLGLAS 132 (174)
T ss_dssp SCC-------------HHHHHHHHHTBCTTTCEEEECCCCC
T ss_pred CCC-------------chHHHHHHHHHHHhcCceEEEEEec
Confidence 221 3456666666655 58988866543
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=96.00 E-value=0.017 Score=46.49 Aligned_cols=72 Identities=13% Similarity=0.164 Sum_probs=48.0
Q ss_pred cEEEEccCCchhHHHHHHcC--------CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEecc
Q 026558 50 RILIVGCGNSAFSEGMVDDG--------YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~~~--------~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~ 121 (237)
.|+|+|+|+|.++..+++.. ..+++.+|.|+...+.-+++++...++.+. .++...+ ...-+|+++.
T Consensus 82 ~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~~~i~w~-~~~~~~~----~~~g~iiaNE 156 (365)
T d1zkda1 82 RLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHWH-DSFEDVP----EGPAVILANE 156 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEEEE-SSGGGSC----CSSEEEEEES
T ss_pred eEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcccccceec-cChhhcc----cCCeEEEecc
Confidence 79999999999987765531 237899999999888888877654455443 2333332 1224566665
Q ss_pred cccee
Q 026558 122 TLDSL 126 (237)
Q Consensus 122 ~l~~~ 126 (237)
.++.+
T Consensus 157 ~fDAl 161 (365)
T d1zkda1 157 YFDVL 161 (365)
T ss_dssp SGGGS
T ss_pred cCccc
Confidence 55544
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.92 E-value=0.022 Score=40.40 Aligned_cols=93 Identities=18% Similarity=0.315 Sum_probs=60.6
Q ss_pred CcEEEEcc-CC-chhHHHHHH-cCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc----c-ccCCCccEEEec
Q 026558 49 QRILIVGC-GN-SAFSEGMVD-DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----E-FQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~-G~-G~~~~~~~~-~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~----~-~~~~~fD~I~~~ 120 (237)
.+||-+|| |. |..+..+++ .+...++++|.++.-++.+++.-. ..++..+-.+.. . .....+|+|+..
T Consensus 29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga----~~~i~~~~~~~~~~~~~~~~~~~~d~vid~ 104 (170)
T d1jvba2 29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA----DYVINASMQDPLAEIRRITESKGVDAVIDL 104 (170)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC----SEEEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred CEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCC----ceeeccCCcCHHHHHHHHhhcccchhhhcc
Confidence 48999997 32 555555554 455699999999999999987631 123322222211 0 124569999875
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
.. ....++.+.+.++|||++++.-.
T Consensus 105 ~g-------------~~~~~~~a~~~l~~~G~iv~~G~ 129 (170)
T d1jvba2 105 NN-------------SEKTLSVYPKALAKQGKYVMVGL 129 (170)
T ss_dssp CC-------------CHHHHTTGGGGEEEEEEEEECCS
T ss_pred cc-------------cchHHHhhhhhcccCCEEEEecc
Confidence 32 13456778999999999987643
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=95.48 E-value=0.11 Score=40.26 Aligned_cols=113 Identities=13% Similarity=0.097 Sum_probs=73.4
Q ss_pred HHHhhCCCCCCcEEEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC---C--CCCcEEEEcccccc-c-c---
Q 026558 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS---N--RPQLKYIKMDVRQM-D-E--- 108 (237)
Q Consensus 39 ~l~~~~~~~~~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~---~--~~~~~~~~~d~~~~-~-~--- 108 (237)
.+...+..+...|+.||||-=.-...+.......++=+|. |++++.-++.+. . ..+..++..|+.+- . .
T Consensus 81 ~~~~~~~~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~ 159 (297)
T d2uyoa1 81 YFNNAVIDGIRQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRS 159 (297)
T ss_dssp HHHHHHHTTCCEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHH
T ss_pred HHHHHHhhCCCeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHh
Confidence 3444444444467779998865554443222336666664 777776666552 1 23456777777641 1 1
Q ss_pred --ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 109 --FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 109 --~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+.....=++++-+++.++ +.+....+|+.+.+...||+.+++-.
T Consensus 160 ~g~d~~~ptl~i~EGvl~YL-----~~~~~~~ll~~i~~~~~~GS~l~~d~ 205 (297)
T d2uyoa1 160 AGFDPSARTAWLAEGLLMYL-----PATAQDGLFTEIGGLSAVGSRIAVET 205 (297)
T ss_dssp TTCCTTSCEEEEECSCGGGS-----CHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred cCCCCCCCEEEEEccccccC-----CHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 233445667777788888 88999999999999999999987754
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.41 E-value=0.011 Score=42.16 Aligned_cols=87 Identities=11% Similarity=0.142 Sum_probs=57.0
Q ss_pred CcEEEEcc-CC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc--ccCCCccEEEeccccc
Q 026558 49 QRILIVGC-GN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE--FQTGSFDSVVDKGTLD 124 (237)
Q Consensus 49 ~~iLdlG~-G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~--~~~~~fD~I~~~~~l~ 124 (237)
.+||-.|+ |. |.....+++....++++++.+++.++.+++.-.. .++ |..+... -....+|+|+...
T Consensus 29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~----~~i--~~~~~~~~~~~~~g~D~v~d~~--- 99 (171)
T d1iz0a2 29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAE----EAA--TYAEVPERAKAWGGLDLVLEVR--- 99 (171)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCS----EEE--EGGGHHHHHHHTTSEEEEEECS---
T ss_pred CEEEEEeccccchhhhhhhhcccccccccccccccccccccccccc----eee--ehhhhhhhhhcccccccccccc---
Confidence 38888884 33 6677777776555999999999888888865321 111 3322210 1245699998631
Q ss_pred eeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
+ . .+....++|+|+|+++..
T Consensus 100 -------G-~----~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 100 -------G-K----EVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp -------C-T----THHHHHTTEEEEEEEEEC
T ss_pred -------c-h----hHHHHHHHHhcCCcEEEE
Confidence 1 1 256778999999998875
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.37 E-value=0.0062 Score=44.06 Aligned_cols=100 Identities=14% Similarity=0.101 Sum_probs=61.5
Q ss_pred CcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEE--------Ecccccccc---------c-
Q 026558 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYI--------KMDVRQMDE---------F- 109 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~--------~~d~~~~~~---------~- 109 (237)
.+|+-||+|. |..+...+....+.|+.+|+++..++..+......-.+... .+.+.++.. +
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~l~ 109 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVL 109 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHH
T ss_pred cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHHHH
Confidence 3899999998 67777777665569999999999999999875321111000 001111100 0
Q ss_pred -cCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEE
Q 026558 110 -QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (237)
Q Consensus 110 -~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 155 (237)
.-...|+|+....+- +..-+.-+-+++.+.||||.+++=
T Consensus 110 ~~l~~aDlVI~talip-------G~~aP~lit~~mv~~Mk~GSVIVD 149 (183)
T d1l7da1 110 KELVKTDIAITTALIP-------GKPAPVLITEEMVTKMKPGSVIID 149 (183)
T ss_dssp HHHTTCSEEEECCCCT-------TSCCCCCSCHHHHTTSCTTCEEEE
T ss_pred HHHHhhhhheeeeecC-------CcccceeehHHHHHhcCCCcEEEE
Confidence 023689999864321 223334467789999999998753
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.33 E-value=0.039 Score=39.35 Aligned_cols=90 Identities=13% Similarity=0.061 Sum_probs=57.4
Q ss_pred CcEEEEcc-C-CchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc----c-ccCCCccEEEecc
Q 026558 49 QRILIVGC-G-NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----E-FQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~-G-~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~----~-~~~~~fD~I~~~~ 121 (237)
.+||-.|. | .|..+..+++....+++++.-+++-.+.+++... ..++...-.++. . .....+|+|+..-
T Consensus 27 ~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga----~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~ 102 (183)
T d1pqwa_ 27 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGV----EYVGDSRSVDFADEILELTDGYGVDVVLNSL 102 (183)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCC----SEEEETTCSTHHHHHHHHTTTCCEEEEEECC
T ss_pred CEEEEECCCCCcccccchhhccccccceeeecccccccccccccc----cccccCCccCHHHHHHHHhCCCCEEEEEecc
Confidence 38888773 2 2666677776654589999889888888886531 122221111211 0 1346799999742
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
. ...++.+.++|+++|+++..
T Consensus 103 g--------------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 103 A--------------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp C--------------THHHHHHHHTEEEEEEEEEC
T ss_pred c--------------chHHHHHHHHhcCCCEEEEE
Confidence 2 12567788999999998875
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.33 E-value=0.054 Score=38.66 Aligned_cols=94 Identities=11% Similarity=0.090 Sum_probs=58.0
Q ss_pred CcEEEEccCC-chhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEE-ccccccc-----cccCCCccEEEec
Q 026558 49 QRILIVGCGN-SAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIK-MDVRQMD-----EFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~-G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~-~d~~~~~-----~~~~~~fD~I~~~ 120 (237)
..|+-+|||. |.....+++.. ..+|+++|.+++-++.|++.-.. .++. .+..... ......+|+++..
T Consensus 31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~----~~in~~~~~~~~~~~~~~~~g~G~d~vi~~ 106 (176)
T d1d1ta2 31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT----ECISPKDSTKPISEVLSEMTGNNVGYTFEV 106 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS----EEECGGGCSSCHHHHHHHHHTSCCCEEEEC
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc----EEECccccchHHHHHHHHhccccceEEEEe
Confidence 3899999987 55666666654 45999999999999999998532 2221 1111110 0134679988874
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhc-CCCcEEEEEEcC
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVL-KDKGVYILVTYG 159 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L-~pgG~l~~~~~~ 159 (237)
..- ...+.+....+ +.+|++++.-..
T Consensus 107 ~g~-------------~~~~~~a~~~~~~~~G~~v~vG~~ 133 (176)
T d1d1ta2 107 IGH-------------LETMIDALASCHMNYGTSVVVGVP 133 (176)
T ss_dssp SCC-------------HHHHHHHHTTSCTTTCEEEECSCC
T ss_pred CCc-------------hHHHHHHHHHhhcCCeEEEEEEcc
Confidence 321 22344444555 555898886543
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=95.18 E-value=0.08 Score=37.76 Aligned_cols=91 Identities=13% Similarity=0.073 Sum_probs=61.7
Q ss_pred CcEEEEccCC--chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc-----cccCCCccEEEecc
Q 026558 49 QRILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD-----EFQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~--G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-----~~~~~~fD~I~~~~ 121 (237)
.+||-.|++. |.....+++...++++++..+++.++.+++.-. -.++..+-.+.. ......+|+|+..-
T Consensus 31 ~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga----~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~v 106 (182)
T d1v3va2 31 ETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGF----DAAFNYKTVNSLEEALKKASPDGYDCYFDNV 106 (182)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC----SEEEETTSCSCHHHHHHHHCTTCEEEEEESS
T ss_pred CEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhh----hhhcccccccHHHHHHHHhhcCCCceeEEec
Confidence 3888888755 566677777765699999999998888887742 222322222111 12356799998742
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
. .+.++...++|+++|.++..-
T Consensus 107 G--------------~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 107 G--------------GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp C--------------HHHHHHHGGGEEEEEEEEECC
T ss_pred C--------------chhhhhhhhhccCCCeEEeec
Confidence 1 346788999999999998753
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.90 E-value=0.21 Score=33.44 Aligned_cols=87 Identities=14% Similarity=0.144 Sum_probs=56.6
Q ss_pred cEEEEccCCchhHHHHHH----cCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc---ccCCCccEEEeccc
Q 026558 50 RILIVGCGNSAFSEGMVD----DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGT 122 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~----~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~I~~~~~ 122 (237)
+|+=+|+ |.++..+++ .++ .++.+|.+++.++.+++.+ +..++.+|..+... ..-...|.+++...
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~----~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~ 74 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEI----DALVINGDCTKIKTLEDAGIEDADMYIAVTG 74 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC----SSEEEESCTTSHHHHHHTTTTTCSEEEECCS
T ss_pred EEEEECC--CHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhh----hhhhccCcccchhhhhhcChhhhhhhcccCC
Confidence 4666665 555555443 455 9999999999999888774 56889999987542 23456888887321
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEE
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVY 153 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l 153 (237)
.....-++....+.+.+..++
T Consensus 75 ----------~d~~N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 75 ----------KEEVNLMSSLLAKSYGINKTI 95 (132)
T ss_dssp ----------CHHHHHHHHHHHHHTTCCCEE
T ss_pred ----------cHHHHHHHHHHHHHcCCceEE
Confidence 122333455566677777444
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.87 E-value=0.018 Score=41.44 Aligned_cols=92 Identities=12% Similarity=0.135 Sum_probs=60.5
Q ss_pred CcEEEEccCC--chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEc-cc--cccccccCCCccEEEecccc
Q 026558 49 QRILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM-DV--RQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~--G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~-d~--~~~~~~~~~~fD~I~~~~~l 123 (237)
.+||--|++. |...+.+++....+++++--+++-.+.+++.-.. .++.- +. ........+.+|+|+..-.
T Consensus 33 ~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~----~vi~~~~~~~~~~~~~~~~gvD~vid~vg- 107 (176)
T d1xa0a2 33 GPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAK----EVLAREDVMAERIRPLDKQRWAAAVDPVG- 107 (176)
T ss_dssp CCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCS----EEEECC---------CCSCCEEEEEECST-
T ss_pred CEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccc----eeeecchhHHHHHHHhhccCcCEEEEcCC-
Confidence 4899888644 5677777877656999999999999988876321 11111 10 1111124568999987422
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEc
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
...+....++|++||+++....
T Consensus 108 -------------g~~~~~~l~~l~~~Griv~~G~ 129 (176)
T d1xa0a2 108 -------------GRTLATVLSRMRYGGAVAVSGL 129 (176)
T ss_dssp -------------TTTHHHHHHTEEEEEEEEECSC
T ss_pred -------------chhHHHHHHHhCCCceEEEeec
Confidence 2248889999999999988654
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=94.80 E-value=0.25 Score=37.44 Aligned_cols=73 Identities=16% Similarity=0.245 Sum_probs=53.7
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccEE
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDSV 117 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~I 117 (237)
.+|--|++.|. ....+++.|. +|+.+|.+++.++.+.+.+.....+.++.+|+.+.... .-+..|++
T Consensus 8 valITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~l 86 (268)
T d2bgka1 8 VAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLDIM 86 (268)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCCccee
Confidence 78888876653 3344566675 99999999999999888886656788889999774311 13689999
Q ss_pred Eecccc
Q 026558 118 VDKGTL 123 (237)
Q Consensus 118 ~~~~~l 123 (237)
+.+...
T Consensus 87 VnnAG~ 92 (268)
T d2bgka1 87 FGNVGV 92 (268)
T ss_dssp EECCCC
T ss_pred cccccc
Confidence 987654
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=94.72 E-value=0.066 Score=37.99 Aligned_cols=91 Identities=9% Similarity=0.077 Sum_probs=60.1
Q ss_pred CcEEEEccCC--chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc----cc-cCCCccEEEecc
Q 026558 49 QRILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----EF-QTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~G~--G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~----~~-~~~~fD~I~~~~ 121 (237)
.+||-.|+|. |.....+++....++++++.|++-++.+++.-. ..++...-.++. .. ....+|+|+...
T Consensus 30 ~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa----~~vi~~~~~d~~~~v~~~t~g~g~d~v~d~~ 105 (179)
T d1qora2 30 EQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA----WQVINYREEDLVERLKEITGGKKVRVVYDSV 105 (179)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC----SEEEETTTSCHHHHHHHHTTTCCEEEEEECS
T ss_pred CEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCC----eEEEECCCCCHHHHHHHHhCCCCeEEEEeCc
Confidence 3888887654 667777777655699999999999999987632 123321112211 11 245789988743
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
. ...+....+.++++|++++..
T Consensus 106 g--------------~~~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 106 G--------------RDTWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp C--------------GGGHHHHHHTEEEEEEEEECC
T ss_pred c--------------HHHHHHHHHHHhcCCeeeecc
Confidence 2 124677889999999987654
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.55 E-value=0.01 Score=45.43 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=43.8
Q ss_pred EEEEcccccc-ccccCCCccEEEeccccceeccCC---CC-hHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 97 KYIKMDVRQM-DEFQTGSFDSVVDKGTLDSLLCGS---NS-RQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 97 ~~~~~d~~~~-~~~~~~~fD~I~~~~~l~~~~~~~---~~-~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.|+.+|+.+. ..++++++|+|+++.+......+. .+ .+.....+.++.|+|+|+|.+++..
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~ 71 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG 71 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEec
Confidence 5778898764 347789999999998864321111 01 2456778999999999999998854
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=94.42 E-value=0.3 Score=36.60 Aligned_cols=74 Identities=19% Similarity=0.279 Sum_probs=53.0
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccEE
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDSV 117 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~I 117 (237)
.+|--|++.|. ....+++.|. +|+.+|.+++.++.+.+.+....++.++.+|+.+.... .-+..|++
T Consensus 8 ~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiL 86 (251)
T d1zk4a1 8 VAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVSTL 86 (251)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSCCEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCCceEE
Confidence 67777755542 3344566675 99999999999998888876556888999999874321 12679999
Q ss_pred Eeccccc
Q 026558 118 VDKGTLD 124 (237)
Q Consensus 118 ~~~~~l~ 124 (237)
+.+....
T Consensus 87 VnnAg~~ 93 (251)
T d1zk4a1 87 VNNAGIA 93 (251)
T ss_dssp EECCCCC
T ss_pred Eeccccc
Confidence 9876543
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.10 E-value=0.26 Score=34.45 Aligned_cols=96 Identities=11% Similarity=0.027 Sum_probs=60.1
Q ss_pred CCCCCCcEEEEccCC-chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccc-cc-----ccccCCCcc
Q 026558 44 VPSHHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVR-QM-----DEFQTGSFD 115 (237)
Q Consensus 44 ~~~~~~~iLdlG~G~-G~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-~~-----~~~~~~~fD 115 (237)
+.++. +||-.|||. |..+..+++. +...++++|.++.-++.+++.-. ..++..+-. +. .....+.+|
T Consensus 26 ~~~G~-tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa----~~~i~~~~~~~~~~~~~~~~~~~g~D 100 (176)
T d2fzwa2 26 LEPGS-VCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA----TECINPQDFSKPIQEVLIEMTDGGVD 100 (176)
T ss_dssp CCTTC-EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC----SEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCCCC-EEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCC----cEEEeCCchhhHHHHHHHHHcCCCCc
Confidence 34444 899999874 4455555554 45689999999999999887632 122211111 10 012246799
Q ss_pred EEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+|+..-.- ...++.+...+++||.+++..
T Consensus 101 ~vid~~G~-------------~~~~~~~~~~~~~g~~~~~v~ 129 (176)
T d2fzwa2 101 YSFECIGN-------------VKVMRAALEACHKGWGVSVVV 129 (176)
T ss_dssp EEEECSCC-------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred EeeecCCC-------------HHHHHHHHHhhcCCceeEEEE
Confidence 99985321 346777899999998776654
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=94.07 E-value=0.014 Score=43.99 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=42.2
Q ss_pred EEEEcccccc-ccccCCCccEEEeccccceec---cCCCChH----HHHHHHHHHHHhcCCCcEEEEEE
Q 026558 97 KYIKMDVRQM-DEFQTGSFDSVVDKGTLDSLL---CGSNSRQ----NATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 97 ~~~~~d~~~~-~~~~~~~fD~I~~~~~l~~~~---~~~~~~~----~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+++++|+.+. ..++++++|+|+++.+...-. ....+.+ .....++++.|+|+|+|.+++..
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~ 74 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc
Confidence 5788999773 346789999999998753210 0111222 34568889999999999887654
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.00 E-value=0.13 Score=38.82 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=51.9
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEcccccccc---------ccCCCc
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDE---------FQTGSF 114 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~---------~~~~~f 114 (237)
.+|--|++.|. ....+++.|. +|++++.+++.++.+.+.++. ..++.++++|+.+... -.-+..
T Consensus 12 v~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g~i 90 (257)
T d1xg5a_ 12 LALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSGV 90 (257)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHCCC
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence 78888877663 3345566676 999999999998888776632 2367788999977431 113679
Q ss_pred cEEEecccc
Q 026558 115 DSVVDKGTL 123 (237)
Q Consensus 115 D~I~~~~~l 123 (237)
|+++.+...
T Consensus 91 D~lVnnAg~ 99 (257)
T d1xg5a_ 91 DICINNAGL 99 (257)
T ss_dssp SEEEECCCC
T ss_pred CEEEecccc
Confidence 999987654
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.64 E-value=0.18 Score=36.43 Aligned_cols=99 Identities=15% Similarity=0.205 Sum_probs=65.7
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-------CCCc---------------EE-EEcccc
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-------RPQL---------------KY-IKMDVR 104 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-------~~~~---------------~~-~~~d~~ 104 (237)
+|.-||+|+ | .++..++..|+ +|+.+|.+++.++.+++++.. .... ++ ...|..
T Consensus 6 kvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~ 84 (192)
T d1f0ya2 6 HVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA 84 (192)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred EEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence 788999988 4 34555666776 999999999999988776521 0000 00 111111
Q ss_pred ccccccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 105 QMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 105 ~~~~~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
+ .-...|+|+-. +.+. .+...++++++.+.++++.++...+..-+
T Consensus 85 ~----a~~~ad~ViEa-v~E~-------l~~K~~v~~~l~~~~~~~~ilasnTS~l~ 129 (192)
T d1f0ya2 85 S----VVHSTDLVVEA-IVEN-------LKVKNELFKRLDKFAAEHTIFASNTSSLQ 129 (192)
T ss_dssp H----HTTSCSEEEEC-CCSC-------HHHHHHHHHHHTTTSCTTCEEEECCSSSC
T ss_pred h----hhcccceehhh-cccc-------hhHHHHHHHHHhhhcccCceeeccCcccc
Confidence 1 12457888875 3333 38889999999999999988877664443
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=93.43 E-value=0.68 Score=34.51 Aligned_cols=73 Identities=12% Similarity=0.209 Sum_probs=51.3
Q ss_pred cEEEEccCCchhHHH----HHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEcccccccc---------ccCCCcc
Q 026558 50 RILIVGCGNSAFSEG----MVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDE---------FQTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~----~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~---------~~~~~fD 115 (237)
.+|--|++.| ++.. +++.|. +|+.+|.+++.++.+.+.++. ..++.++.+|+.+... -.-+..|
T Consensus 12 valITGas~G-IG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iD 89 (251)
T d2c07a1 12 VALVTGAGRG-IGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNVD 89 (251)
T ss_dssp EEEEESTTSH-HHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCCC
T ss_pred EEEEeCCCCH-HHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCCce
Confidence 6777776555 4444 445565 999999999999888877743 2478889999987432 1236899
Q ss_pred EEEeccccc
Q 026558 116 SVVDKGTLD 124 (237)
Q Consensus 116 ~I~~~~~l~ 124 (237)
+++.+....
T Consensus 90 ilvnnag~~ 98 (251)
T d2c07a1 90 ILVNNAGIT 98 (251)
T ss_dssp EEEECCCCC
T ss_pred eeeeccccc
Confidence 999876543
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=93.19 E-value=0.28 Score=34.43 Aligned_cols=95 Identities=16% Similarity=0.192 Sum_probs=59.5
Q ss_pred cEEEEccCCc--hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccc---cccccccCCCccEEEecc
Q 026558 50 RILIVGCGNS--AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDV---RQMDEFQTGSFDSVVDKG 121 (237)
Q Consensus 50 ~iLdlG~G~G--~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~---~~~~~~~~~~fD~I~~~~ 121 (237)
+|--+|+|.- .++..+++.|+ +|+.+|.++.-++.+++.-.. .+......... .+.. ..-...|+|+..-
T Consensus 3 ~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~aD~iii~v 80 (184)
T d1bg6a2 3 TYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIG-LAVKDADVILIVV 80 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHH-HHHTTCSEEEECS
T ss_pred EEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhH-hHhcCCCEEEEEE
Confidence 6788999883 34445667777 999999999988888766311 11111111111 1111 1125689998742
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
+......+++++...|+++-.+++.
T Consensus 81 ----------~~~~~~~~~~~i~~~l~~~~~iv~~ 105 (184)
T d1bg6a2 81 ----------PAIHHASIAANIASYISEGQLIILN 105 (184)
T ss_dssp ----------CGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred ----------chhHHHHHHHHhhhccCCCCEEEEe
Confidence 2245688999999999998876543
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=93.00 E-value=0.16 Score=36.15 Aligned_cols=91 Identities=13% Similarity=0.148 Sum_probs=57.6
Q ss_pred CcEEEEcc--CCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc-cccCCCccEEEeccccce
Q 026558 49 QRILIVGC--GNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD-EFQTGSFDSVVDKGTLDS 125 (237)
Q Consensus 49 ~~iLdlG~--G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~~~fD~I~~~~~l~~ 125 (237)
+.||-.|+ |.|..++.+++....+++++.-+++..+.+++.-. ..++.-+-.+.. .+....+|.|+. .
T Consensus 33 ~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGa----d~vi~~~~~~~~~~l~~~~~~~vvD-----~ 103 (177)
T d1o89a2 33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGA----SRVLPRDEFAESRPLEKQVWAGAID-----T 103 (177)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTE----EEEEEGGGSSSCCSSCCCCEEEEEE-----S
T ss_pred CcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhcc----ccccccccHHHHHHHHhhcCCeeEE-----E
Confidence 36776664 23566667777655699999999999888876631 122221111111 134566788764 2
Q ss_pred eccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+ + ...+....+.|+++|+++..-
T Consensus 104 V-----g----g~~~~~~l~~l~~~Griv~~G 126 (177)
T d1o89a2 104 V-----G----DKVLAKVLAQMNYGGCVAACG 126 (177)
T ss_dssp S-----C----HHHHHHHHHTEEEEEEEEECC
T ss_pred c-----c----hHHHHHHHHHhccccceEeec
Confidence 2 1 235888999999999998864
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=92.98 E-value=0.33 Score=34.06 Aligned_cols=92 Identities=14% Similarity=0.150 Sum_probs=56.1
Q ss_pred CcEEEEccCCc-hhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEE-ccccccc-----cccCCCccEEEec
Q 026558 49 QRILIVGCGNS-AFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK-MDVRQMD-----EFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~G-~~~~~~~~~-~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~-~d~~~~~-----~~~~~~fD~I~~~ 120 (237)
.+||-+|+|.+ .....+++. +...++++|.+++-++.+++... ..++. .+..+.. ....+.+|+|+..
T Consensus 30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga----~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~ 105 (176)
T d2jhfa2 30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA----TECVNPQDYKKPIQEVLTEMSNGGVDFSFEV 105 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC----SEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCC----eeEEecCCchhHHHHHHHHHhcCCCCEEEec
Confidence 38999999753 333444443 45699999999999999988742 12221 1111110 1234679999885
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCC-cEEEEEE
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVT 157 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~ 157 (237)
... ...++.+...++++ |.+++..
T Consensus 106 ~G~-------------~~~~~~a~~~~~~~~g~~~~~~ 130 (176)
T d2jhfa2 106 IGR-------------LDTMVTALSCCQEAYGVSVIVG 130 (176)
T ss_dssp SCC-------------HHHHHHHHHHBCTTTCEEEECS
T ss_pred CCc-------------hhHHHHHHHHHhcCCcceEEec
Confidence 332 33466677788887 4555443
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.60 E-value=0.8 Score=33.95 Aligned_cols=71 Identities=18% Similarity=0.449 Sum_probs=52.0
Q ss_pred cEEEEccCCc---hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc----c-cCCCccEEEecc
Q 026558 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE----F-QTGSFDSVVDKG 121 (237)
Q Consensus 50 ~iLdlG~G~G---~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~----~-~~~~fD~I~~~~ 121 (237)
++|--|++.| .....+++.|. +|+.+|.+++.++.+.+.+ +++..++.|+.+... + .-++.|+++.+.
T Consensus 9 ~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~g~iDilVnnA 84 (244)
T d1pr9a_ 9 RVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVREC---PGIEPVCVDLGDWEATERALGSVGPVDLLVNNA 84 (244)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS---TTCEEEECCTTCHHHHHHHHTTCCCCCEEEECC
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhc---CCCeEEEEeCCCHHHHHHHHHHhCCceEEEecc
Confidence 8888887665 33455566776 9999999999988888776 467888899976432 1 236799999876
Q ss_pred ccc
Q 026558 122 TLD 124 (237)
Q Consensus 122 ~l~ 124 (237)
...
T Consensus 85 g~~ 87 (244)
T d1pr9a_ 85 AVA 87 (244)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=92.54 E-value=0.85 Score=34.14 Aligned_cols=72 Identities=14% Similarity=0.249 Sum_probs=51.6
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccc---------cCCCccE
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (237)
.+|--|.+.|. ....+++.|. +|+.+|.+++.++.+.+.+.. ..++.++.+|+.+.... .-+..|+
T Consensus 7 ~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi 85 (260)
T d1zema1 7 VCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDF 85 (260)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCCCe
Confidence 77777866653 3455666775 999999999999988877743 34678889999764311 1367999
Q ss_pred EEeccc
Q 026558 117 VVDKGT 122 (237)
Q Consensus 117 I~~~~~ 122 (237)
++.+..
T Consensus 86 lVnnaG 91 (260)
T d1zema1 86 LFNNAG 91 (260)
T ss_dssp EEECCC
T ss_pred ehhhhc
Confidence 998754
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=92.51 E-value=0.7 Score=34.54 Aligned_cols=105 Identities=12% Similarity=0.197 Sum_probs=65.2
Q ss_pred cEEEEccCCc---hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccEE
Q 026558 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDSV 117 (237)
Q Consensus 50 ~iLdlG~G~G---~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~I 117 (237)
.+|--|++.| .....+++.|. +|+.+|.+++.++.+.+.+. .+..++.+|+.+.... .-+..|++
T Consensus 8 ~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDil 84 (253)
T d1hxha_ 8 VALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELG--ERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVL 84 (253)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHC--TTEEEECCCTTCHHHHHHHHHHHHHHHCSCCEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhC--CCeEEEEeecCCHHHHHHHHHHHHHHhCCCCeE
Confidence 6777776555 23344566675 99999999999888877764 3567788888764311 13678999
Q ss_pred Eeccccceec-cCCCChHHHH-----------HHHHHHHHhcC-CCcEEEEEE
Q 026558 118 VDKGTLDSLL-CGSNSRQNAT-----------QMLKEVWRVLK-DKGVYILVT 157 (237)
Q Consensus 118 ~~~~~l~~~~-~~~~~~~~~~-----------~~l~~~~~~L~-pgG~l~~~~ 157 (237)
+.+....... ....+.++.. .+.+.+...|+ .+|.++...
T Consensus 85 VnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~is 137 (253)
T d1hxha_ 85 VNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMA 137 (253)
T ss_dssp EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred EecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceeccc
Confidence 9986543221 1111223222 24556666665 468777654
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=92.41 E-value=0.77 Score=30.24 Aligned_cols=90 Identities=11% Similarity=0.056 Sum_probs=61.0
Q ss_pred cCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc---ccCCCccEEEeccccceeccCCC
Q 026558 56 CGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGTLDSLLCGSN 131 (237)
Q Consensus 56 ~G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~I~~~~~l~~~~~~~~ 131 (237)
||.|..+..+++.. ...++.+|.++...+.++.. ++.++.+|..+... ..-.+.+.+++...
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~-----~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~--------- 71 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS-----GANFVHGDPTRVSDLEKANVRGARAVIVNLE--------- 71 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT-----TCEEEESCTTSHHHHHHTTCTTCSEEEECCS---------
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc-----CccccccccCCHHHHHHhhhhcCcEEEEecc---------
Confidence 56788888888764 23789999999988877654 57899999976432 23456788876321
Q ss_pred ChHHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 026558 132 SRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (237)
Q Consensus 132 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 160 (237)
.......+....+.+.|...++......
T Consensus 72 -~d~~n~~~~~~~r~~~~~~~iia~~~~~ 99 (129)
T d2fy8a1 72 -SDSETIHCILGIRKIDESVRIIAEAERY 99 (129)
T ss_dssp -SHHHHHHHHHHHHHHCSSSCEEEECSSG
T ss_pred -chhhhHHHHHHHHHHCCCceEEEEEcCH
Confidence 1333444556677888888776665433
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=92.28 E-value=0.084 Score=37.34 Aligned_cols=91 Identities=14% Similarity=0.171 Sum_probs=59.0
Q ss_pred CcEEEEccC--CchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEE-cccc--ccccccCCCccEEEecccc
Q 026558 49 QRILIVGCG--NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK-MDVR--QMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G--~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~-~d~~--~~~~~~~~~fD~I~~~~~l 123 (237)
..||--|++ -|...+.+++...++++++.-+++-.+.+++.-.. .++. .|.. .......+.+|+|+..-.
T Consensus 25 ~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad----~vi~~~~~~~~~~~~~~~~gvd~vid~vg- 99 (167)
T d1tt7a2 25 GSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGAS----EVISREDVYDGTLKALSKQQWQGAVDPVG- 99 (167)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCS----EEEEHHHHCSSCCCSSCCCCEEEEEESCC-
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhccc----ceEeccchhchhhhcccCCCceEEEecCc-
Confidence 378877642 25666777776546999999999888888877421 1221 1111 111123467999887421
Q ss_pred ceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
...+.+..+.|+++|++++.-
T Consensus 100 -------------g~~~~~~~~~l~~~G~iv~~G 120 (167)
T d1tt7a2 100 -------------GKQLASLLSKIQYGGSVAVSG 120 (167)
T ss_dssp -------------THHHHHHHTTEEEEEEEEECC
T ss_pred -------------HHHHHHHHHHhccCceEEEee
Confidence 336788999999999998754
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=92.22 E-value=0.056 Score=41.83 Aligned_cols=63 Identities=14% Similarity=0.083 Sum_probs=44.5
Q ss_pred CcEEEEccccc-cccccCCCccEEEeccccceeccC---CCCh----HHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 95 QLKYIKMDVRQ-MDEFQTGSFDSVVDKGTLDSLLCG---SNSR----QNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 95 ~~~~~~~d~~~-~~~~~~~~fD~I~~~~~l~~~~~~---~~~~----~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+-.++++|+.+ +..++++++|+|+.+.+....... .... +.....+.+++++|+|+|.+++..
T Consensus 12 ~~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~ 82 (320)
T d1booa_ 12 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDF 82 (320)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccc
Confidence 44789999986 334778999999999875322111 1111 235668999999999999998865
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.21 E-value=0.48 Score=35.82 Aligned_cols=108 Identities=13% Similarity=0.223 Sum_probs=68.8
Q ss_pred cE-EEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-CCCCcEEEEccccccccc---------cCCCcc
Q 026558 50 RI-LIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEF---------QTGSFD 115 (237)
Q Consensus 50 ~i-LdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~---------~~~~fD 115 (237)
+| |-=|++.|. ....+++.+...|+.++.+++.++.+.+.++ ...++.++.+|+.+.... .-+..|
T Consensus 4 rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~iD 83 (275)
T d1wmaa1 4 HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 83 (275)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSSEE
T ss_pred eEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCCcE
Confidence 55 444554442 2234555533499999999999888887774 235789999999875421 136799
Q ss_pred EEEeccccceeccCC-CChHH-----------HHHHHHHHHHhcCCCcEEEEEE
Q 026558 116 SVVDKGTLDSLLCGS-NSRQN-----------ATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 116 ~I~~~~~l~~~~~~~-~~~~~-----------~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+++.+..+....... ...++ ...+.+.+...|+++|+++.+.
T Consensus 84 iLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 84 VLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp EEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred EEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 999987654321111 11122 2236777788889999987765
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=92.08 E-value=0.38 Score=31.99 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=53.5
Q ss_pred cEEEEccCCchhHHHHH----HcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---cCCCccEEEeccc
Q 026558 50 RILIVGCGNSAFSEGMV----DDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---QTGSFDSVVDKGT 122 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~----~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---~~~~fD~I~~~~~ 122 (237)
+++-+|+ |.++..++ +.+. .++.+|.+++.++.++.. ...++.+|..+...+ .-...|.+++...
T Consensus 2 ~~iIiG~--G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~~-----~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~ 73 (134)
T d2hmva1 2 QFAVIGL--GRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASY-----ATHAVIANATEENELLSLGIRNFEYVIVAIG 73 (134)
T ss_dssp CEEEECC--SHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTTT-----CSEEEECCTTCTTHHHHHTGGGCSEEEECCC
T ss_pred EEEEECC--CHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHHh-----CCcceeeecccchhhhccCCccccEEEEEcC
Confidence 4555555 55555444 3455 999999999999887644 346778898765421 2245787776322
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.......+-.+.+.+.+...++...
T Consensus 74 ----------~~~~~~~~~~~~~~~~~~~~iiar~ 98 (134)
T d2hmva1 74 ----------ANIQASTLTTLLLKELDIPNIWVKA 98 (134)
T ss_dssp ----------SCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred ----------chHHhHHHHHHHHHHcCCCcEEeec
Confidence 1222334444455555666665554
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=92.06 E-value=0.7 Score=34.27 Aligned_cols=105 Identities=18% Similarity=0.211 Sum_probs=64.2
Q ss_pred cEEEEccCCc---hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc---------ccCCCccEE
Q 026558 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---------FQTGSFDSV 117 (237)
Q Consensus 50 ~iLdlG~G~G---~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~---------~~~~~fD~I 117 (237)
.+|--|++.| .....+++.|. +|+.+|.+++.++.+.+.+. .++.++.+|+.+... -.-+..|++
T Consensus 6 ~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil 82 (243)
T d1q7ba_ 6 IALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLG--ANGKGLMLNVTDPASIESVLEKIRAEFGEVDIL 82 (243)
T ss_dssp EEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHG--GGEEEEECCTTCHHHHHHHHHHHHHHTCSCSEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhC--CCCcEEEEEecCHHHhhhhhhhhhcccCCccee
Confidence 6676676655 23345566676 99999999999888877763 356788889976431 123689999
Q ss_pred Eeccccceec-cCCCChHHHH-----------HHHHHHHHhc--CCCcEEEEEE
Q 026558 118 VDKGTLDSLL-CGSNSRQNAT-----------QMLKEVWRVL--KDKGVYILVT 157 (237)
Q Consensus 118 ~~~~~l~~~~-~~~~~~~~~~-----------~~l~~~~~~L--~pgG~l~~~~ 157 (237)
+.+......- ....+.++.. .+.+.+.+.| +.+|.++...
T Consensus 83 VnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~is 136 (243)
T d1q7ba_ 83 VNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIG 136 (243)
T ss_dssp EECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred hhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeec
Confidence 9875433221 0011222222 2455566666 3468877754
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=92.01 E-value=1.1 Score=33.55 Aligned_cols=73 Identities=12% Similarity=0.231 Sum_probs=51.6
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEcccccccc-------c-c--CCCcc
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDE-------F-Q--TGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~-------~-~--~~~fD 115 (237)
.+|--|++.|. +...+++.|. +|+.+|.+++.++.+.+.+.. ..++.++.+|+.+... . . ....|
T Consensus 10 ~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~~id 88 (259)
T d2ae2a_ 10 TALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGKLN 88 (259)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTCCC
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCCCce
Confidence 78888876653 3455566776 999999999998888777642 3467788999976431 0 1 24789
Q ss_pred EEEecccc
Q 026558 116 SVVDKGTL 123 (237)
Q Consensus 116 ~I~~~~~l 123 (237)
+++.+...
T Consensus 89 ilvnnAG~ 96 (259)
T d2ae2a_ 89 ILVNNAGI 96 (259)
T ss_dssp EEEECCCC
T ss_pred EEEECCce
Confidence 99987654
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.53 E-value=1.5 Score=30.78 Aligned_cols=91 Identities=12% Similarity=0.096 Sum_probs=58.0
Q ss_pred CcEEEEcc--CCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc----cccCCCccEEEecc
Q 026558 49 QRILIVGC--GNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----EFQTGSFDSVVDKG 121 (237)
Q Consensus 49 ~~iLdlG~--G~G~~~~~~~~~~-~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~----~~~~~~fD~I~~~~ 121 (237)
..||-.|+ |.|...+.+++.. ...++++..+++....+.+.+.. ..++...-.++. ......+|+|+..-
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~ga---d~vi~~~~~~~~~~~~~~~~~GvDvv~D~v 108 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGF---DAAVNYKTGNVAEQLREACPGGVDVYFDNV 108 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCC---SEEEETTSSCHHHHHHHHCTTCEEEEEESS
T ss_pred CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccc---eEEeeccchhHHHHHHHHhccCceEEEecC
Confidence 37888773 4588999999864 34688888887777766655421 122221111111 12346799998642
Q ss_pred ccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
. ...++...++|+++|+++..
T Consensus 109 G--------------g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 109 G--------------GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp C--------------HHHHHHHHTTEEEEEEEEEC
T ss_pred C--------------chhHHHHhhhccccccEEEe
Confidence 1 23578899999999999864
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=91.40 E-value=0.99 Score=33.59 Aligned_cols=107 Identities=16% Similarity=0.252 Sum_probs=65.1
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEccccccccc---------cCCCcc
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEF---------QTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~---------~~~~fD 115 (237)
++|--|++.|. ....+++.|. +|+.+|.+++.++.+.+.+. ...++.++.+|+.+.... .-++.|
T Consensus 7 ~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 85 (251)
T d1vl8a_ 7 VALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGKLD 85 (251)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 78888876652 3445566776 99999999888777665542 124677889999764321 125799
Q ss_pred EEEeccccceec-cCCCChHHHH-----------HHHHHHHHhcCC--CcEEEEEE
Q 026558 116 SVVDKGTLDSLL-CGSNSRQNAT-----------QMLKEVWRVLKD--KGVYILVT 157 (237)
Q Consensus 116 ~I~~~~~l~~~~-~~~~~~~~~~-----------~~l~~~~~~L~p--gG~l~~~~ 157 (237)
+++.+....... ...-+.++.. .+.+.+...|+. +|.++...
T Consensus 86 iLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~ 141 (251)
T d1vl8a_ 86 TVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIG 141 (251)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEEC
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccc
Confidence 999876543220 0001223222 356666777743 46666653
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=91.17 E-value=1.6 Score=32.07 Aligned_cols=106 Identities=14% Similarity=0.171 Sum_probs=66.3
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccEE
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDSV 117 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~I 117 (237)
.+|-.|++.|. ....+++.|. +|+.++.+.+.++.+.+.+. .++.++++|+.+.... .-++.|++
T Consensus 7 ~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dls~~~~i~~~~~~i~~~~g~iDiL 83 (241)
T d2a4ka1 7 TILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALE--AEAIAVVADVSDPKAVEAVFAEALEEFGRLHGV 83 (241)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCC--SSEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcC--CceEEEEecCCCHHHHHHHHHHHHHHhCCccEe
Confidence 77778876542 3344555665 99999999988887777664 3677889999764321 12679999
Q ss_pred Eeccccceec-cCCCChHHH-----------HHHHHHHHHhcCCCcEEEEEEc
Q 026558 118 VDKGTLDSLL-CGSNSRQNA-----------TQMLKEVWRVLKDKGVYILVTY 158 (237)
Q Consensus 118 ~~~~~l~~~~-~~~~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~~ 158 (237)
+.+......- ...-+.+.. ..+.+.+...++.++.+++.+.
T Consensus 84 innAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss 136 (241)
T d2a4ka1 84 AHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGS 136 (241)
T ss_dssp EEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred ccccccccccchhhhhccccccccccccccccccccccccccccccceeeccc
Confidence 9976543220 001122222 2345666778888887766553
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=90.82 E-value=1.5 Score=32.56 Aligned_cols=102 Identities=14% Similarity=0.164 Sum_probs=61.7
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccEE
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDSV 117 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~I 117 (237)
.+|--|++.|. ....+++.|. +|+.+|.+++..+.+++. +..++.+|+.+.... .-++.|++
T Consensus 7 ~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiL 80 (248)
T d2d1ya1 7 GVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAI-----GGAFFQVDLEDERERVRFVEEAAYALGRVDVL 80 (248)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHH-----TCEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc-----CCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeE
Confidence 77878866552 3345566776 999999998877766544 456788899774311 12689999
Q ss_pred Eeccccceec-cCCCChHHHH-----------HHHHHHHHhcCC--CcEEEEEE
Q 026558 118 VDKGTLDSLL-CGSNSRQNAT-----------QMLKEVWRVLKD--KGVYILVT 157 (237)
Q Consensus 118 ~~~~~l~~~~-~~~~~~~~~~-----------~~l~~~~~~L~p--gG~l~~~~ 157 (237)
+.+....... ...-+.++.. .+.+.+...|++ +|.++...
T Consensus 81 VnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~is 134 (248)
T d2d1ya1 81 VNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVA 134 (248)
T ss_dssp EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred EEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccc
Confidence 9875432221 1111223222 255566666643 57777654
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.71 E-value=0.73 Score=34.25 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=54.5
Q ss_pred cEEEEccCCc---hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-CCCCcEEEEcccccccc---------ccCCCccE
Q 026558 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDE---------FQTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G---~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~---------~~~~~fD~ 116 (237)
.||--|++.| .++..+++.|. +++.+|.+++.++...+.+. ..+++.++.+|+.+... ..-+..|+
T Consensus 9 v~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~idi 87 (244)
T d1yb1a_ 9 IVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDVSI 87 (244)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCCCSE
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCCce
Confidence 6677787666 34456677776 99999999999888877764 23578889999987532 12467999
Q ss_pred EEeccccce
Q 026558 117 VVDKGTLDS 125 (237)
Q Consensus 117 I~~~~~l~~ 125 (237)
++.+.....
T Consensus 88 linnag~~~ 96 (244)
T d1yb1a_ 88 LVNNAGVVY 96 (244)
T ss_dssp EEECCCCCC
T ss_pred eEeeccccc
Confidence 998866543
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.58 E-value=0.74 Score=35.96 Aligned_cols=115 Identities=13% Similarity=0.214 Sum_probs=70.0
Q ss_pred hHHHHHhhCCCCC-CcEEEEccCCchhHHHHHHcCCCeEEEEeCC-HHHHHHHHHHcC----------------------
Q 026558 36 LAPLIKLYVPSHH-QRILIVGCGNSAFSEGMVDDGYEDVVNVDIS-SVVIEAMMKKYS---------------------- 91 (237)
Q Consensus 36 ~~~~l~~~~~~~~-~~iLdlG~G~G~~~~~~~~~~~~~~~~vD~s-~~~~~~a~~~~~---------------------- 91 (237)
+..++..++..++ ..|+-||||.=.....+.+... .+..+|++ |++++.=++.+.
T Consensus 84 id~~v~~Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~~-~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~ 162 (328)
T d1rjda_ 84 IDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFL 162 (328)
T ss_dssp HHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEE
T ss_pred HHHHHHHHHHHCCCcEEEEeCCccchHHHHhhccCC-CcEEEECCcHHHHHHHHHHHHhchhhhhhcccccccccccccc
Confidence 3444444442222 3799999999777666655432 44555554 555444332210
Q ss_pred -CCCCcEEEEcccccccc--------ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 92 -NRPQLKYIKMDVRQMDE--------FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 92 -~~~~~~~~~~d~~~~~~--------~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
..++...+.+|+.+... +.....=++++-.++.++ +++...++++.+.+.... |.+++..
T Consensus 163 ~~s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl-----~~~~~~~li~~~~~~f~~-~~~i~YE 231 (328)
T d1rjda_ 163 IDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYM-----HNNESQLLINTIMSKFSH-GLWISYD 231 (328)
T ss_dssp EECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGS-----CHHHHHHHHHHHHHHCSS-EEEEEEE
T ss_pred CCCCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcC-----CHHHHHHHHHHHHHhCCC-ceEEEec
Confidence 01356678888876431 223344578888889988 888899999998888765 5555544
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=90.47 E-value=0.19 Score=38.80 Aligned_cols=72 Identities=18% Similarity=0.310 Sum_probs=45.1
Q ss_pred cEEEEccCCchhHHHH----HHcCCCeEEEEe-CCHHHHHHHHHHcCCCCCcEEEEcccccccc----ccCCCccEEEec
Q 026558 50 RILIVGCGNSAFSEGM----VDDGYEDVVNVD-ISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE----FQTGSFDSVVDK 120 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~----~~~~~~~~~~vD-~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~----~~~~~fD~I~~~ 120 (237)
+||-.| |+|.++..+ +++++ +|+++| ++..............++++++.+|+.+... +...++|+|+-.
T Consensus 2 KILVTG-atGfIGs~lv~~Ll~~g~-~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~ 79 (338)
T d1orra_ 2 KLLITG-GCGFLGSNLASFALSQGI-DLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHL 79 (338)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTC-EEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred EEEEEC-CCcHHHHHHHHHHHHCcC-EEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEee
Confidence 688777 688777655 44566 999998 3332222222222233689999999987432 234568999876
Q ss_pred ccc
Q 026558 121 GTL 123 (237)
Q Consensus 121 ~~l 123 (237)
...
T Consensus 80 aa~ 82 (338)
T d1orra_ 80 AGQ 82 (338)
T ss_dssp CCC
T ss_pred ccc
Confidence 554
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.35 E-value=1.1 Score=33.43 Aligned_cols=70 Identities=26% Similarity=0.390 Sum_probs=51.1
Q ss_pred cEEEEccCCc---hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccEE
Q 026558 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDSV 117 (237)
Q Consensus 50 ~iLdlG~G~G---~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~I 117 (237)
++|--|++.| .....+++.|. +|+.+|.+++.++.+.+.. +++.++.+|+.+.... .-++.|++
T Consensus 8 ~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~---~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDil 83 (250)
T d1ydea1 8 VVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQEL---PGAVFILCDVTQEDDVKTLVSETIRRFGRLDCV 83 (250)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC---TTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc---CCCeEEEccCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 7888887665 23445566675 9999999999998888776 4678889999774321 12679999
Q ss_pred Eecccc
Q 026558 118 VDKGTL 123 (237)
Q Consensus 118 ~~~~~l 123 (237)
+.+...
T Consensus 84 VnnAG~ 89 (250)
T d1ydea1 84 VNNAGH 89 (250)
T ss_dssp EECCCC
T ss_pred Eecccc
Confidence 988654
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=90.31 E-value=0.63 Score=32.60 Aligned_cols=102 Identities=10% Similarity=0.075 Sum_probs=62.2
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
.|-=||+|. | .....|++.++ ++++.|.+++.++...++...... ..-...+.++. ..-...|.++..-.
T Consensus 4 nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~-~~~a~~~~~~~-~~~~~~~~ii~~~~----- 75 (176)
T d2pgda2 4 DIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEAKGTK-VLGAHSLEEMV-SKLKKPRRIILLVK----- 75 (176)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTTTTSS-CEECSSHHHHH-HHBCSSCEEEECSC-----
T ss_pred cEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHhcccccc-ccchhhhhhhh-hhhcccceEEEecC-----
Confidence 466678777 3 45566677777 999999999998887766422111 11111222221 11244577766322
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCchh
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 163 (237)
+.+....++..+...+++|-+++-.+-..|..
T Consensus 76 ----~~~~v~~v~~~l~~~~~~g~iiid~sT~~~~~ 107 (176)
T d2pgda2 76 ----AGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRD 107 (176)
T ss_dssp ----TTHHHHHHHHHHHHHCCTTCEEEECSCCCHHH
T ss_pred ----chHHHHHHHHHHHhccccCcEEEecCcchhHH
Confidence 22666778889999999988776655444443
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.29 E-value=2 Score=31.64 Aligned_cols=71 Identities=23% Similarity=0.399 Sum_probs=50.7
Q ss_pred CcEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc----c-cCCCccEEEec
Q 026558 49 QRILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE----F-QTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~----~-~~~~fD~I~~~ 120 (237)
+++|--|++.|. ....+++.|. +|+.+|.+++.++.+.+.. +++..+.+|+.+... + .-++.|+++.+
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~g~iDilVnn 81 (242)
T d1cyda_ 6 LRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKEC---PGIEPVCVDLGDWDATEKALGGIGPVDLLVNN 81 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS---TTCEEEECCTTCHHHHHHHHTTCCCCSEEEEC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc---CCCeEEEEeCCCHHHHHHHHHHcCCCeEEEEC
Confidence 378888876652 3445566675 9999999998888877776 467888899977532 1 12679999987
Q ss_pred ccc
Q 026558 121 GTL 123 (237)
Q Consensus 121 ~~l 123 (237)
...
T Consensus 82 Ag~ 84 (242)
T d1cyda_ 82 AAL 84 (242)
T ss_dssp CCC
T ss_pred Ccc
Confidence 543
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=90.29 E-value=1.3 Score=31.29 Aligned_cols=99 Identities=15% Similarity=0.225 Sum_probs=65.2
Q ss_pred CcEEEEccCC-ch-hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-------CCCc----------EEE-Ecccccccc
Q 026558 49 QRILIVGCGN-SA-FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-------RPQL----------KYI-KMDVRQMDE 108 (237)
Q Consensus 49 ~~iLdlG~G~-G~-~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-------~~~~----------~~~-~~d~~~~~~ 108 (237)
++|--||+|+ |. ++..++..|+ +|+.+|++++.++.+.++... .... .+. ..+...
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--- 80 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGT-PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGD--- 80 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTT---
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccc---
Confidence 3788899988 43 3445666776 999999999999887766420 0000 011 111111
Q ss_pred ccCCCccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCc
Q 026558 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (237)
Q Consensus 109 ~~~~~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 161 (237)
-...|+|+-. ..+.+ +..+++++++.++++++-++.-.+.+-+
T Consensus 81 --~~~adlViEa-v~E~l-------~~K~~lf~~l~~~~~~~~IiaSnTS~l~ 123 (186)
T d1wdka3 81 --FGNVDLVVEA-VVENP-------KVKQAVLAEVENHVREDAILASNTSTIS 123 (186)
T ss_dssp --GGGCSEEEEC-CCSCH-------HHHHHHHHHHHTTSCTTCEEEECCSSSC
T ss_pred --ccccceeeee-ecchH-------HHHHHHHHHHHhhcCCCeeEEecccccc
Confidence 1346888864 44444 8888999999999999998877665443
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=90.03 E-value=1.4 Score=32.77 Aligned_cols=74 Identities=14% Similarity=0.190 Sum_probs=52.1
Q ss_pred cEEEEccCCc---hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEcccccccc----------ccCCCcc
Q 026558 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDE----------FQTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G---~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~----------~~~~~fD 115 (237)
+||-.|+..| ..+..+++.|. +|+.++.+++.++.+.+.+.. ..++.++.+|+.+... ...+..|
T Consensus 8 ~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g~id 86 (258)
T d1ae1a_ 8 TALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLN 86 (258)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSCCC
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCCCcE
Confidence 7888887655 23445566776 999999999888888777642 3467788999976431 1135789
Q ss_pred EEEeccccc
Q 026558 116 SVVDKGTLD 124 (237)
Q Consensus 116 ~I~~~~~l~ 124 (237)
+++.+..+.
T Consensus 87 ilinnag~~ 95 (258)
T d1ae1a_ 87 ILVNNAGVV 95 (258)
T ss_dssp EEEECCCCC
T ss_pred EEecccccc
Confidence 988865543
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=89.80 E-value=0.86 Score=34.04 Aligned_cols=73 Identities=19% Similarity=0.280 Sum_probs=50.4
Q ss_pred cEEEEccCCchhHH----HHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccc---------cCCCcc
Q 026558 50 RILIVGCGNSAFSE----GMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~~~~----~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD 115 (237)
++|--|++.| ++. .+++.|. +|+.+|.+++.++.+.+.++. ..++.++.+|+.+.... .-+..|
T Consensus 13 ~alITGas~G-IG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~iD 90 (255)
T d1fmca_ 13 CAIITGAGAG-IGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKVD 90 (255)
T ss_dssp EEEETTTTSH-HHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred EEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 7777775554 444 4455665 999999999988888777642 24778899999874321 126799
Q ss_pred EEEeccccc
Q 026558 116 SVVDKGTLD 124 (237)
Q Consensus 116 ~I~~~~~l~ 124 (237)
+++.+....
T Consensus 91 ilvnnAG~~ 99 (255)
T d1fmca_ 91 ILVNNAGGG 99 (255)
T ss_dssp EEEECCCCC
T ss_pred EeeeCCcCC
Confidence 999876543
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=89.39 E-value=1.7 Score=29.91 Aligned_cols=91 Identities=13% Similarity=0.178 Sum_probs=53.8
Q ss_pred CcEEEEccCCchhH-HHHHH-cCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc------cccCCCccEEEec
Q 026558 49 QRILIVGCGNSAFS-EGMVD-DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD------EFQTGSFDSVVDK 120 (237)
Q Consensus 49 ~~iLdlG~G~G~~~-~~~~~-~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~------~~~~~~fD~I~~~ 120 (237)
.+||-+|+|.+... ..++. .+...++++|.+++-++.+++.-. ..++..+-.+.. ......+|+|+..
T Consensus 30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GA----d~~in~~~~~~~~~~~~~~~~~~G~d~vid~ 105 (175)
T d1cdoa2 30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA----TDFVNPNDHSEPISQVLSKMTNGGVDFSLEC 105 (175)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC----CEEECGGGCSSCHHHHHHHHHTSCBSEEEEC
T ss_pred CEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCC----cEEEcCCCcchhHHHHHHhhccCCcceeeee
Confidence 38999999885443 33333 345589999999999999987632 123321111110 0124579999875
Q ss_pred cccceeccCCCChHHHHHHHHHHHHhcCCC-cEEEEE
Q 026558 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILV 156 (237)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~ 156 (237)
-.- ...+..+...++++ |++++.
T Consensus 106 ~G~-------------~~~~~~a~~~~~~g~~~~~~~ 129 (175)
T d1cdoa2 106 VGN-------------VGVMRNALESCLKGWGVSVLV 129 (175)
T ss_dssp SCC-------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred cCC-------------HHHHHHHHHHhhCCCcceeEE
Confidence 321 33456667777666 444443
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=89.37 E-value=0.17 Score=36.29 Aligned_cols=74 Identities=9% Similarity=0.087 Sum_probs=48.8
Q ss_pred CcEEEEccCCc---hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc--cCCCccEEEecccc
Q 026558 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF--QTGSFDSVVDKGTL 123 (237)
Q Consensus 49 ~~iLdlG~G~G---~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~--~~~~fD~I~~~~~l 123 (237)
++||-.|++.| .+...+++.|. +++.++.+++.++.+.+.+....++.+...|..+.... .-+..|+++.+...
T Consensus 24 K~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDilin~Ag~ 102 (191)
T d1luaa1 24 KKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAGAI 102 (191)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEECCCT
T ss_pred CEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeeeecCcc
Confidence 48999986554 23345566665 99999999998888877764333455566666553311 13568999987543
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=89.26 E-value=1.3 Score=32.63 Aligned_cols=69 Identities=22% Similarity=0.296 Sum_probs=49.4
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccEE
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDSV 117 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~I 117 (237)
.+|--|++.|. ....+++.|. +|+.+|.+++.++.+.+.+ +..++.+|+.+.... .-+..|++
T Consensus 7 ~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~----~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil 81 (242)
T d1ulsa_ 7 AVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAV----GAHPVVMDVADPASVERGFAEALAHLGRLDGV 81 (242)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT----TCEEEECCTTCHHHHHHHHHHHHHHHSSCCEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc----CCeEEEEecCCHHHHHHHHHHHHHhcCCceEE
Confidence 78888876652 3345566676 9999999999988887765 567889999774321 12579999
Q ss_pred Eecccc
Q 026558 118 VDKGTL 123 (237)
Q Consensus 118 ~~~~~l 123 (237)
+.+...
T Consensus 82 VnnAG~ 87 (242)
T d1ulsa_ 82 VHYAGI 87 (242)
T ss_dssp EECCCC
T ss_pred EECCcc
Confidence 987543
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.16 E-value=1.3 Score=31.56 Aligned_cols=40 Identities=30% Similarity=0.436 Sum_probs=29.7
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHc
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKY 90 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~ 90 (237)
+|.-+|+|. | .++..+++.|+ +|+|+|++++.++...+..
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln~g~ 43 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQGK 43 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTC
T ss_pred EEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhcccC
Confidence 466788887 3 34455677787 9999999999888776543
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.00 E-value=0.97 Score=33.65 Aligned_cols=75 Identities=19% Similarity=0.298 Sum_probs=52.2
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC---CCCcEEEEccccccccc---------cCCCc
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEF---------QTGSF 114 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~---------~~~~f 114 (237)
.+|--|++.|. ....+++.|. +|+.+|.+++.++.+.+.+.. ..++.++.+|+.+.... .-+..
T Consensus 5 valITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i 83 (254)
T d2gdza1 5 VALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGRL 83 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence 67777876552 3344566675 999999999988888777642 23678889999875321 12689
Q ss_pred cEEEeccccce
Q 026558 115 DSVVDKGTLDS 125 (237)
Q Consensus 115 D~I~~~~~l~~ 125 (237)
|+++.+.....
T Consensus 84 DilVnnAg~~~ 94 (254)
T d2gdza1 84 DILVNNAGVNN 94 (254)
T ss_dssp CEEEECCCCCC
T ss_pred Ceecccccccc
Confidence 99998866543
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.95 E-value=1.5 Score=32.47 Aligned_cols=72 Identities=24% Similarity=0.335 Sum_probs=51.6
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccEE
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDSV 117 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~I 117 (237)
.+|--|++.|. ....+++.|. +|+.+|.+++.++.+.+.+. .++.++.+|+.+.... .-+..|++
T Consensus 8 ~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~idil 84 (244)
T d1nffa_ 8 VALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELA--DAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVL 84 (244)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTG--GGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhh--CcceEEEeecCCHHHHHHHHHHHHHHhCCCeEE
Confidence 77777876662 3445666776 99999999998888887764 3677888999774321 13579999
Q ss_pred Eeccccc
Q 026558 118 VDKGTLD 124 (237)
Q Consensus 118 ~~~~~l~ 124 (237)
+.+....
T Consensus 85 innAG~~ 91 (244)
T d1nffa_ 85 VNNAGIL 91 (244)
T ss_dssp EECCCCC
T ss_pred EECCccc
Confidence 9876543
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=88.77 E-value=1.6 Score=32.32 Aligned_cols=72 Identities=24% Similarity=0.444 Sum_probs=49.8
Q ss_pred EEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccc---------cCCCccEE
Q 026558 51 ILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFDSV 117 (237)
Q Consensus 51 iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD~I 117 (237)
+|--|++.|. ....+++.|. +|+.+|.+++.++.+.+.+.. ..++.++.+|+.+.... .-++.|++
T Consensus 4 alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil 82 (255)
T d1gega_ 4 ALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDVI 82 (255)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCEE
T ss_pred EEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccEE
Confidence 4666766552 3345566675 999999999998887776642 24778889999874321 13689999
Q ss_pred Eecccc
Q 026558 118 VDKGTL 123 (237)
Q Consensus 118 ~~~~~l 123 (237)
+.+...
T Consensus 83 VnnAG~ 88 (255)
T d1gega_ 83 VNNAGV 88 (255)
T ss_dssp EECCCC
T ss_pred Eecccc
Confidence 987543
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=88.69 E-value=0.86 Score=28.62 Aligned_cols=64 Identities=20% Similarity=0.339 Sum_probs=39.8
Q ss_pred cEEEEcc-CCc--hhHHHHHHcCCCeEEEEeCCH-HHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEecccc
Q 026558 50 RILIVGC-GNS--AFSEGMVDDGYEDVVNVDISS-VVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 50 ~iLdlG~-G~G--~~~~~~~~~~~~~~~~vD~s~-~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l 123 (237)
+|.=+|. |+| .++..+.+.|+ +|+|.|... ...+..++. .+.+..+...+.. ...|+|+.+..+
T Consensus 10 ~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~~~L~~~-----Gi~v~~g~~~~~i----~~~d~vV~S~AI 77 (96)
T d1p3da1 10 QIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVTQRLAQA-----GAKIYIGHAEEHI----EGASVVVVSSAI 77 (96)
T ss_dssp EEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHHHHHHHT-----TCEEEESCCGGGG----TTCSEEEECTTS
T ss_pred EEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhhhHHHHC-----CCeEEECCccccC----CCCCEEEECCCc
Confidence 6777764 455 55677788888 999999863 233333332 4566655444332 357888887654
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.69 E-value=1.4 Score=32.92 Aligned_cols=73 Identities=14% Similarity=0.158 Sum_probs=52.0
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC-CCCCcEEEEcccccccc-------c-c--CCCcc
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDE-------F-Q--TGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~-------~-~--~~~fD 115 (237)
++|--|++.|. ....+++.|. +|+.+|.+++.++.+.+.+. ...++.++.+|+.+... . . .+..|
T Consensus 10 ~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~id 88 (259)
T d1xq1a_ 10 TVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKLD 88 (259)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTTCCS
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhCCCcc
Confidence 78888876653 4445666776 99999999998888877763 23478889999976431 1 1 36799
Q ss_pred EEEecccc
Q 026558 116 SVVDKGTL 123 (237)
Q Consensus 116 ~I~~~~~l 123 (237)
+++.+...
T Consensus 89 ilvnnAG~ 96 (259)
T d1xq1a_ 89 ILINNLGA 96 (259)
T ss_dssp EEEEECCC
T ss_pred cccccccc
Confidence 99987654
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=88.45 E-value=0.85 Score=31.37 Aligned_cols=94 Identities=15% Similarity=0.233 Sum_probs=59.2
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
+|-=||+|. | ..+..+++.++ ++++.|.++..++.+++.. .. ...+..+. ....|+|++.-+
T Consensus 2 kIgiIGlG~MG~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~-----~~-~~~~~~e~----~~~~d~ii~~v~----- 65 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAG-----AE-TASTAKAI----AEQCDVIITMLP----- 65 (161)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTT-----CE-ECSSHHHH----HHHCSEEEECCS-----
T ss_pred EEEEEehhHHHHHHHHHHHHCCC-eEEEEeCCcchhHHHHHhh-----hh-hcccHHHH----HhCCCeEEEEcC-----
Confidence 355678877 3 45556777777 9999999999988887653 11 22222222 235688887422
Q ss_pred cCCCChHHHHHHH---HHHHHhcCCCcEEEEEEcCCchh
Q 026558 128 CGSNSRQNATQML---KEVWRVLKDKGVYILVTYGAPIY 163 (237)
Q Consensus 128 ~~~~~~~~~~~~l---~~~~~~L~pgG~l~~~~~~~~~~ 163 (237)
+......++ +.+...+++|.+++-.+-..|..
T Consensus 66 ----~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~ 100 (161)
T d1vpda2 66 ----NSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLA 100 (161)
T ss_dssp ----SHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHH
T ss_pred ----CHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHH
Confidence 235555655 45778888887776555445543
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=88.43 E-value=2.5 Score=28.45 Aligned_cols=96 Identities=6% Similarity=0.035 Sum_probs=57.0
Q ss_pred cEEEEccCCchhHHHHH----HcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc---ccCCCccEEEeccc
Q 026558 50 RILIVGCGNSAFSEGMV----DDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGT 122 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~----~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~I~~~~~ 122 (237)
+|+=+|+| ..+..++ +.+. .++.+|.+++......+.... .++.++.+|..+... ..-...|.|++...
T Consensus 5 HiII~G~g--~~g~~l~~~L~~~~~-~v~vId~d~~~~~~~~~~~~~-~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~ 80 (153)
T d1id1a_ 5 HFIVCGHS--ILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLG-DNADVIPGDSNDSSVLKKAGIDRCRAILALSD 80 (153)
T ss_dssp CEEEECCS--HHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHC-TTCEEEESCTTSHHHHHHHTTTTCSEEEECSS
T ss_pred EEEEECCC--HHHHHHHHHHHHcCC-CEEEEeccchhHHHHHHHhhc-CCcEEEEccCcchHHHHHhccccCCEEEEccc
Confidence 67777664 4554444 3444 899999998654333322211 368899999977532 23456888887421
Q ss_pred cceeccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
.+.....+....+-+.|...++.....
T Consensus 81 ----------~d~~n~~~~~~~r~~~~~~~iia~~~~ 107 (153)
T d1id1a_ 81 ----------NDADNAFVVLSAKDMSSDVKTVLAVSD 107 (153)
T ss_dssp ----------CHHHHHHHHHHHHHHTSSSCEEEECSS
T ss_pred ----------cHHHHHHHHHHHHHhCCCCceEEEEcC
Confidence 123333445566677788777665533
|
| >d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: LPG1296-like domain: Uncharacterized protein LPG1296 species: Legionella pneumophila [TaxId: 446]
Probab=88.35 E-value=0.83 Score=34.55 Aligned_cols=99 Identities=7% Similarity=0.001 Sum_probs=75.6
Q ss_pred EEEccCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccc-c--ccCCCccEEEeccccceecc
Q 026558 52 LIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD-E--FQTGSFDSVVDKGTLDSLLC 128 (237)
Q Consensus 52 LdlG~G~G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~--~~~~~fD~I~~~~~l~~~~~ 128 (237)
+.+=+|+-.++..+++.. .+...+|+.|.-.+..++++....++.+...|..... . .+.++=-+|+.+.+++.-
T Consensus 87 l~~YPGSP~ia~~llR~~-Drl~l~ELHp~e~~~L~~~~~~~~~~~v~~~DG~~~l~allPP~~rRgLVLIDPpYE~k-- 163 (271)
T d2oo3a1 87 LSYYPGSPYFAINQLRSQ-DRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERK-- 163 (271)
T ss_dssp CCEEECHHHHHHHHSCTT-SEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCST--
T ss_pred cCcCCCCHHHHHHhCCCC-CceEEeecCHHHHHHHHHHhccCCCceEEcCchHHHHHhhCCCCCCceEEEecCCcCCH--
Confidence 456788888877777775 4999999999999999999987789999999986521 0 134455689988887654
Q ss_pred CCCChHHHHHHHHHHHHhcC--CCcEEEEEEc
Q 026558 129 GSNSRQNATQMLKEVWRVLK--DKGVYILVTY 158 (237)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~--pgG~l~~~~~ 158 (237)
++..++++.+.+.++ |.|++++...
T Consensus 164 -----~ey~~v~~~l~~a~kr~~~g~~~iWYP 190 (271)
T d2oo3a1 164 -----EEYKEIPYAIKNAYSKFSTGLYCVWYP 190 (271)
T ss_dssp -----THHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred -----HHHHHHHHHHHHHHHhCCCceEEEEee
Confidence 677777777777776 7788888664
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=87.76 E-value=0.74 Score=32.21 Aligned_cols=72 Identities=14% Similarity=0.266 Sum_probs=45.7
Q ss_pred CCcEEEEccCC-chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccc
Q 026558 48 HQRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (237)
Q Consensus 48 ~~~iLdlG~G~-G~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~ 124 (237)
.++||=+|||- +....+.+..+..+++.+.-+++..+...+++....++.....| +. ....+|+|+..-++.
T Consensus 18 ~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~--~~---~~~~~diiIN~tp~g 90 (171)
T d1p77a1 18 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMD--SI---PLQTYDLVINATSAG 90 (171)
T ss_dssp TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGG--GC---CCSCCSEEEECCCC-
T ss_pred CCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhc--cc---cccccceeeeccccc
Confidence 34899999966 33333333334469999999998888887777543333333332 22 246799999986654
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=87.68 E-value=3 Score=31.03 Aligned_cols=107 Identities=17% Similarity=0.236 Sum_probs=65.0
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCC-HHHHHHHHHHcC-CCCCcEEEEccccccccc---------cCCCcc
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDIS-SVVIEAMMKKYS-NRPQLKYIKMDVRQMDEF---------QTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s-~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~---------~~~~fD 115 (237)
++|--|++.|. +...+++.|. +|+.++.+ ++.++.+.+.+. ...++.+..+|+.+.... .-+..|
T Consensus 20 ~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id 98 (272)
T d1g0oa_ 20 VALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGKLD 98 (272)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 78888876652 4445566675 89999887 555565555442 235678889999774311 136789
Q ss_pred EEEeccccceec-cCCCChHH-----------HHHHHHHHHHhcCCCcEEEEEE
Q 026558 116 SVVDKGTLDSLL-CGSNSRQN-----------ATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 116 ~I~~~~~l~~~~-~~~~~~~~-----------~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+++.+....... ....+.++ ...+.+.+.+.|+.+|..++..
T Consensus 99 ilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~ 152 (272)
T d1g0oa_ 99 IVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 152 (272)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred ccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence 998875443221 00012222 2235677788888888776654
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=87.28 E-value=2.7 Score=30.79 Aligned_cols=108 Identities=13% Similarity=0.236 Sum_probs=64.9
Q ss_pred cEEEEccCCch---hHHHHHHcCCC------eEEEEeCCHHHHHHHHHHcCC-CCCcEEEEcccccccc---------cc
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYE------DVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDE---------FQ 110 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~------~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~---------~~ 110 (237)
.||--|++.|. ....+++.|.. .++.++.+++.++.+.+.+.. ..++.++.+|+.+... -.
T Consensus 3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (240)
T d2bd0a1 3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVER 82 (240)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 35666776663 33455666641 389999999988888776643 3467888999987532 12
Q ss_pred CCCccEEEeccccceec-cCCCChHHHHH-----------HHHHHHHhcC--CCcEEEEEE
Q 026558 111 TGSFDSVVDKGTLDSLL-CGSNSRQNATQ-----------MLKEVWRVLK--DKGVYILVT 157 (237)
Q Consensus 111 ~~~fD~I~~~~~l~~~~-~~~~~~~~~~~-----------~l~~~~~~L~--pgG~l~~~~ 157 (237)
-+..|+++.+....... ....+.++..+ +.+.+.+.|+ .+|.++..+
T Consensus 83 ~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~is 143 (240)
T d2bd0a1 83 YGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFIT 143 (240)
T ss_dssp TSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred cCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEe
Confidence 36799999876543221 01112333322 4555666664 467777654
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=87.10 E-value=2.5 Score=31.28 Aligned_cols=73 Identities=16% Similarity=0.238 Sum_probs=50.6
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCC-CCCcEEEEccccccccc---------cCCCccE
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFDS 116 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (237)
.+|--|++.|. ....+++.|. +|+.+|.+++.++.+.+.++. ..++.++.+|+.+.... .-++.|+
T Consensus 4 ValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 82 (257)
T d2rhca1 4 VALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVDV 82 (257)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSCSE
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCCCE
Confidence 45666765552 3345566675 999999999988888777642 24788899999775321 2367999
Q ss_pred EEecccc
Q 026558 117 VVDKGTL 123 (237)
Q Consensus 117 I~~~~~l 123 (237)
++.+...
T Consensus 83 lVnnAG~ 89 (257)
T d2rhca1 83 LVNNAGR 89 (257)
T ss_dssp EEECCCC
T ss_pred EEecccc
Confidence 9987543
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=86.87 E-value=2.6 Score=31.26 Aligned_cols=73 Identities=21% Similarity=0.266 Sum_probs=51.7
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC---CCCCcEEEEccccccccc---------cCCCc
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYS---NRPQLKYIKMDVRQMDEF---------QTGSF 114 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~~~~---------~~~~f 114 (237)
.+|--|++.|. ....+++.|. +|+.+|.+++.++.+.+.+. ...++.++.+|+.+.... .-+..
T Consensus 6 ~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~i 84 (258)
T d1iy8a_ 6 VVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFGRI 84 (258)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhCCC
Confidence 77778876663 4456677776 99999999998887766652 223677889999775321 12679
Q ss_pred cEEEecccc
Q 026558 115 DSVVDKGTL 123 (237)
Q Consensus 115 D~I~~~~~l 123 (237)
|+++.+..+
T Consensus 85 DiLVnnAG~ 93 (258)
T d1iy8a_ 85 DGFFNNAGI 93 (258)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCcc
Confidence 999987653
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=86.86 E-value=0.07 Score=37.15 Aligned_cols=94 Identities=11% Similarity=0.065 Sum_probs=53.6
Q ss_pred cEEEEccCC-c-hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 50 ~iLdlG~G~-G-~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
+|+-+|+|. | .++..+++.|+ +|+.++.++...+.... .......+...-....+ .....+|+|+..-.-
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~D~iii~vka---- 73 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVNL--VETDGSIFNESLTANDP-DFLATSDLLLVTLKA---- 73 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEEE--ECTTSCEEEEEEEESCH-HHHHTCSEEEECSCG----
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhhcc--ccCCccccccccccchh-hhhcccceEEEeecc----
Confidence 688899987 4 34455667776 99999987642211100 01011111100011111 123578999985322
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEE
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
.+....++.+...+.++..++...
T Consensus 74 ------~~~~~~~~~l~~~~~~~~~Iv~~q 97 (167)
T d1ks9a2 74 ------WQVSDAVKSLASTLPVTTPILLIH 97 (167)
T ss_dssp ------GGHHHHHHHHHTTSCTTSCEEEEC
T ss_pred ------cchHHHHHhhccccCcccEEeecc
Confidence 456788999999999988777654
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=86.74 E-value=1.7 Score=32.29 Aligned_cols=71 Identities=21% Similarity=0.348 Sum_probs=50.6
Q ss_pred cEEEEccCCc---hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccEE
Q 026558 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDSV 117 (237)
Q Consensus 50 ~iLdlG~G~G---~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~I 117 (237)
++|--|++.| .....+++.|. +|+.+|.+++.++.+.+.+. .++.++.+|+.+.... .-++.|++
T Consensus 7 ~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil 83 (254)
T d1hdca_ 7 TVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELG--DAARYQHLDVTIEEDWQRVVAYAREEFGSVDGL 83 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTG--GGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred EEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhC--CceEEEEcccCCHHHHHHHHHHHHHHcCCccEE
Confidence 7888887766 33455666776 89999999988877766653 3678899999764321 12579999
Q ss_pred Eecccc
Q 026558 118 VDKGTL 123 (237)
Q Consensus 118 ~~~~~l 123 (237)
+.+...
T Consensus 84 VnnAg~ 89 (254)
T d1hdca_ 84 VNNAGI 89 (254)
T ss_dssp EECCCC
T ss_pred EecCcc
Confidence 887654
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=86.06 E-value=1.6 Score=32.44 Aligned_cols=107 Identities=18% Similarity=0.171 Sum_probs=64.8
Q ss_pred cEEEEccCCc---hhHHHHHHcCCCeEEEE-eCCHHHHHHHHHHcCC-CCCcEEEEcccccccc---------ccCCCcc
Q 026558 50 RILIVGCGNS---AFSEGMVDDGYEDVVNV-DISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDE---------FQTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G---~~~~~~~~~~~~~~~~v-D~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~---------~~~~~fD 115 (237)
.||--|++.| .....+++.|. +|+.+ ..++..++.+.+.+.. ..++.++.+|+.+... ..-+..|
T Consensus 8 ~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id 86 (259)
T d1ja9a_ 8 VALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGGLD 86 (259)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHcCCCc
Confidence 7787775544 34445566676 67654 5667777777766642 3478889999976431 1235799
Q ss_pred EEEeccccceec-cCCCChHH-----------HHHHHHHHHHhcCCCcEEEEEE
Q 026558 116 SVVDKGTLDSLL-CGSNSRQN-----------ATQMLKEVWRVLKDKGVYILVT 157 (237)
Q Consensus 116 ~I~~~~~l~~~~-~~~~~~~~-----------~~~~l~~~~~~L~pgG~l~~~~ 157 (237)
+++.+....+.. ....+.+. ...+++.+...|+.+|..++..
T Consensus 87 ilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~ 140 (259)
T d1ja9a_ 87 FVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS 140 (259)
T ss_dssp EEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccc
Confidence 999886654331 01112222 2236677777888887766643
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=85.77 E-value=2 Score=31.86 Aligned_cols=72 Identities=28% Similarity=0.369 Sum_probs=51.6
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccc---------cCCCccEE
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDSV 117 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~I 117 (237)
++|--|++.|. ....+++.|. +|+.+|.+++.++.+.+.+. .++.++.+|+.+.... .-+..|++
T Consensus 7 ~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~--~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDil 83 (256)
T d1k2wa_ 7 TALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEIG--PAACAIALDVTDQASIDRCVAELLDRWGSIDIL 83 (256)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHHC--TTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhC--CceEEEEeeCCCHHHHHHHHHHHHHHhCCccEE
Confidence 78888876652 3345566665 99999999998888877763 4678889999775321 12689999
Q ss_pred Eeccccc
Q 026558 118 VDKGTLD 124 (237)
Q Consensus 118 ~~~~~l~ 124 (237)
+.+....
T Consensus 84 VnnAg~~ 90 (256)
T d1k2wa_ 84 VNNAALF 90 (256)
T ss_dssp EECCCCC
T ss_pred Eeecccc
Confidence 9986543
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=84.98 E-value=1.8 Score=32.15 Aligned_cols=73 Identities=16% Similarity=0.293 Sum_probs=47.7
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCC-HHHHHHHHHHcC--CCCCcEEEEccccccccc---------cCCCc
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDIS-SVVIEAMMKKYS--NRPQLKYIKMDVRQMDEF---------QTGSF 114 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s-~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~---------~~~~f 114 (237)
.+|--|++.|. ....+++.|. +|+.++.+ +..++.+.+.+. ...++.++.+|+.+.... .-+..
T Consensus 6 ~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i 84 (260)
T d1x1ta1 6 VAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMGRI 84 (260)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHSCC
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 67767766653 3345666776 99999986 556666555442 124678889999875321 12679
Q ss_pred cEEEecccc
Q 026558 115 DSVVDKGTL 123 (237)
Q Consensus 115 D~I~~~~~l 123 (237)
|+++.+...
T Consensus 85 DiLVnnAG~ 93 (260)
T d1x1ta1 85 DILVNNAGI 93 (260)
T ss_dssp SEEEECCCC
T ss_pred cEEEeeccc
Confidence 999987654
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=84.88 E-value=4.3 Score=27.77 Aligned_cols=77 Identities=17% Similarity=0.332 Sum_probs=47.1
Q ss_pred HHHHHhhCCCCCCcEEEEccCCch--hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCc
Q 026558 37 APLIKLYVPSHHQRILIVGCGNSA--FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSF 114 (237)
Q Consensus 37 ~~~l~~~~~~~~~~iLdlG~G~G~--~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~f 114 (237)
...++.......++||-||||--. ....+.+.+..+++.+.-+++..+...+.+. .... + . .....+
T Consensus 6 ~~~l~~~~~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~----~~~~--~--~---~~~~~~ 74 (167)
T d1npya1 6 VKLIEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG----YAYI--N--S---LENQQA 74 (167)
T ss_dssp HHHHHHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHT----CEEE--S--C---CTTCCC
T ss_pred HHHHHHcCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhh----hhhh--h--c---ccccch
Confidence 445555443334589999997643 2334455666689999999887777666652 1221 1 1 234568
Q ss_pred cEEEeccccc
Q 026558 115 DSVVDKGTLD 124 (237)
Q Consensus 115 D~I~~~~~l~ 124 (237)
|+|+..-++.
T Consensus 75 DliINaTpiG 84 (167)
T d1npya1 75 DILVNVTSIG 84 (167)
T ss_dssp SEEEECSSTT
T ss_pred hhheeccccC
Confidence 9998765543
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.59 E-value=3.8 Score=31.06 Aligned_cols=73 Identities=14% Similarity=0.255 Sum_probs=49.7
Q ss_pred cEEEEccCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC------CCCCcEEEEccccccccc---------cC
Q 026558 50 RILIVGCGNSA---FSEGMVDDGYEDVVNVDISSVVIEAMMKKYS------NRPQLKYIKMDVRQMDEF---------QT 111 (237)
Q Consensus 50 ~iLdlG~G~G~---~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~------~~~~~~~~~~d~~~~~~~---------~~ 111 (237)
.+|--|++.|. ....+++.|. +|+.+|.+++.++.+.+.+. ...++.++.+|+.+.... .-
T Consensus 14 valITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 92 (297)
T d1yxma1 14 VAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLDTF 92 (297)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHHHHh
Confidence 77877876653 2345566675 99999999888877665542 124678889999875321 13
Q ss_pred CCccEEEecccc
Q 026558 112 GSFDSVVDKGTL 123 (237)
Q Consensus 112 ~~fD~I~~~~~l 123 (237)
+..|+++.+...
T Consensus 93 G~iDiLVnnAg~ 104 (297)
T d1yxma1 93 GKINFLVNNGGG 104 (297)
T ss_dssp SCCCEEEECCCC
T ss_pred CCeEEEEeeccc
Confidence 679999987653
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=84.40 E-value=1 Score=34.75 Aligned_cols=69 Identities=19% Similarity=0.324 Sum_probs=44.9
Q ss_pred cEEEEccCCchhHHHHHH----cCCCeEEEEeCC----HHHHHHHHHHcCCCCCcEEEEcccccccc----ccCCCccEE
Q 026558 50 RILIVGCGNSAFSEGMVD----DGYEDVVNVDIS----SVVIEAMMKKYSNRPQLKYIKMDVRQMDE----FQTGSFDSV 117 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~~----~~~~~~~~vD~s----~~~~~~a~~~~~~~~~~~~~~~d~~~~~~----~~~~~fD~I 117 (237)
+||-.| |+|.++..+++ .++ +|+++|.. ...+....... ..++.++++|+.+... +...++|+|
T Consensus 2 KiLItG-~tGfIG~~l~~~L~~~g~-~V~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~l~~~~~~~~~d~V 77 (338)
T d1udca_ 2 RVLVTG-GSGYIGSHTCVQLLQNGH-DVIILDNLCNSKRSVLPVIERLG--GKHPTFVEGDIRNEALMTEILHDHAIDTV 77 (338)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTC-EEEEEECCSSCCTTHHHHHHHHH--TSCCEEEECCTTCHHHHHHHHHHTTCSEE
T ss_pred EEEEEC-CCCHHHHHHHHHHHHCcC-EEEEEECCCCcchhhHHHHHhhc--CCCCEEEEeecCCHHHHHHHHhccCCCEE
Confidence 578887 78887776654 466 89999852 22333222221 1478999999987642 345579999
Q ss_pred Eeccc
Q 026558 118 VDKGT 122 (237)
Q Consensus 118 ~~~~~ 122 (237)
+-...
T Consensus 78 iHlAa 82 (338)
T d1udca_ 78 IHFAG 82 (338)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 86544
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=84.38 E-value=1.9 Score=30.35 Aligned_cols=89 Identities=12% Similarity=0.132 Sum_probs=48.5
Q ss_pred cEEEEccCC---chhHHHHHHcCCCeEEEEeCC----HHHHHHHHHHcCCCCCcEEEEccc---ccccc-------ccCC
Q 026558 50 RILIVGCGN---SAFSEGMVDDGYEDVVNVDIS----SVVIEAMMKKYSNRPQLKYIKMDV---RQMDE-------FQTG 112 (237)
Q Consensus 50 ~iLdlG~G~---G~~~~~~~~~~~~~~~~vD~s----~~~~~~a~~~~~~~~~~~~~~~d~---~~~~~-------~~~~ 112 (237)
.||-+.+|+ |...+.+++....+++++--+ ++..+.+++.- --.++..+- .+... ....
T Consensus 31 ~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lG----ad~vi~~~~~~~~~~~~~v~~~~~~~g~ 106 (189)
T d1gu7a2 31 DWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELG----ATQVITEDQNNSREFGPTIKEWIKQSGG 106 (189)
T ss_dssp CEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHT----CSEEEEHHHHHCGGGHHHHHHHHHHHTC
T ss_pred EEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcc----ccEEEeccccchhHHHHHHHHHHhhccC
Confidence 677774444 455666666544488777433 33444444442 122332221 11110 1245
Q ss_pred CccEEEeccccceeccCCCChHHHHHHHHHHHHhcCCCcEEEEE
Q 026558 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (237)
Q Consensus 113 ~fD~I~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 156 (237)
.+|+|+.. + + ...+..+.++|+|+|+++..
T Consensus 107 ~vdvv~D~-----v-----g----~~~~~~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 107 EAKLALNC-----V-----G----GKSSTGIARKLNNNGLMLTY 136 (189)
T ss_dssp CEEEEEES-----S-----C----HHHHHHHHHTSCTTCEEEEC
T ss_pred CceEEEEC-----C-----C----cchhhhhhhhhcCCcEEEEE
Confidence 68998863 1 1 22456778999999999765
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=83.31 E-value=3.9 Score=27.40 Aligned_cols=86 Identities=16% Similarity=0.281 Sum_probs=51.8
Q ss_pred cEEEEccCC-ch-hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEeccccceec
Q 026558 50 RILIVGCGN-SA-FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (237)
Q Consensus 50 ~iLdlG~G~-G~-~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~~ 127 (237)
+|.=||||. |. +...+.+.+..+++..|.+++.++..+++. ++... .+.... ...|+|+.. +
T Consensus 2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~----~~~~~-~~~~~v-----~~~Div~la-----v- 65 (152)
T d1yqga2 2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL----GVETS-ATLPEL-----HSDDVLILA-----V- 65 (152)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT----CCEEE-SSCCCC-----CTTSEEEEC-----S-
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhc----ccccc-cccccc-----cccceEEEe-----c-
Confidence 467788877 44 334455666449999999999988887764 23332 222222 347999863 1
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcEEEEEEcC
Q 026558 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (237)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 159 (237)
.+.+ +..+.+-+++.+.+++....
T Consensus 66 ----kP~~----~~~v~~~l~~~~~~viS~~a 89 (152)
T d1yqga2 66 ----KPQD----MEAACKNIRTNGALVLSVAA 89 (152)
T ss_dssp ----CHHH----HHHHHTTCCCTTCEEEECCT
T ss_pred ----CHHH----HHHhHHHHhhcccEEeeccc
Confidence 1233 34445556666777665543
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=83.23 E-value=2.5 Score=32.74 Aligned_cols=74 Identities=15% Similarity=0.266 Sum_probs=41.2
Q ss_pred cEEEEccCCchhHHHH----HHcCCCeEEEEeCCHHHHHH-----HHHH-cCCCCCcEEEEcccccccc----ccCCCcc
Q 026558 50 RILIVGCGNSAFSEGM----VDDGYEDVVNVDISSVVIEA-----MMKK-YSNRPQLKYIKMDVRQMDE----FQTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~----~~~~~~~~~~vD~s~~~~~~-----a~~~-~~~~~~~~~~~~d~~~~~~----~~~~~fD 115 (237)
+||-.| |+|.++..+ .+.++ +|+++|..+...+. .... ....+++.++.+|+.+... +....+|
T Consensus 3 ~vLITG-atGfiGs~lv~~Ll~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (357)
T d1db3a_ 3 VALITG-VTGQDGSYLAEFLLEKGY-EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD 80 (357)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTC-EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred EEEEeC-CCcHHHHHHHHHHHHCcC-EEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence 566666 678666554 45566 99999974432221 1111 1123578999999987542 2345689
Q ss_pred EEEeccccce
Q 026558 116 SVVDKGTLDS 125 (237)
Q Consensus 116 ~I~~~~~l~~ 125 (237)
+|+-.....+
T Consensus 81 ~v~h~aa~~~ 90 (357)
T d1db3a_ 81 EVYNLGAMSH 90 (357)
T ss_dssp EEEECCCCCT
T ss_pred EEEEeecccc
Confidence 9988765543
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=82.89 E-value=0.87 Score=36.52 Aligned_cols=42 Identities=12% Similarity=0.309 Sum_probs=35.3
Q ss_pred CcEEEEccCCchhHHHHHHc--C-CCeEEEEeCCHHHHHHHHHHc
Q 026558 49 QRILIVGCGNSAFSEGMVDD--G-YEDVVNVDISSVVIEAMMKKY 90 (237)
Q Consensus 49 ~~iLdlG~G~G~~~~~~~~~--~-~~~~~~vD~s~~~~~~a~~~~ 90 (237)
..++|+|+-.|..+..++.. + ..+|+++|.++...+.+++++
T Consensus 214 ~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi 258 (395)
T d2py6a1 214 EKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVL 258 (395)
T ss_dssp CEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHH
T ss_pred CEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHH
Confidence 48999999999988877653 2 358999999999999998876
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=81.98 E-value=5.7 Score=26.98 Aligned_cols=100 Identities=14% Similarity=0.230 Sum_probs=56.2
Q ss_pred CcEEEEccCC-ch-hHHHHHHcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEecccccee
Q 026558 49 QRILIVGCGN-SA-FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (237)
Q Consensus 49 ~~iLdlG~G~-G~-~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l~~~ 126 (237)
.+||-+|.|. |. .+..+...+...++.+.-+.+-.+...+.+. ... .++.++.. .-..+|+|++.-.-.+.
T Consensus 25 ~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~----~~~--~~~~~~~~-~l~~~Divi~atss~~~ 97 (159)
T d1gpja2 25 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLG----GEA--VRFDELVD-HLARSDVVVSATAAPHP 97 (159)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHT----CEE--CCGGGHHH-HHHTCSEEEECCSSSSC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhh----ccc--ccchhHHH-HhccCCEEEEecCCCCc
Confidence 4899998865 32 2233455566589999998655555444542 222 23444431 12479999986432211
Q ss_pred ccCCCChHHHHHHHHHHHHhcCCCcEEEEEEcCCch
Q 026558 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (237)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 162 (237)
--....++...+.-+.+..+++.+..-|.
T Consensus 98 -------ii~~~~i~~~~~~r~~~~~~~iiDlavPr 126 (159)
T d1gpja2 98 -------VIHVDDVREALRKRDRRSPILIIDIANPR 126 (159)
T ss_dssp -------CBCHHHHHHHHHHCSSCCCEEEEECCSSC
T ss_pred -------cccHhhhHHHHHhcccCCCeEEEeecCCC
Confidence 11234455555554555666777766654
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=81.58 E-value=0.69 Score=35.81 Aligned_cols=71 Identities=10% Similarity=0.133 Sum_probs=46.8
Q ss_pred cEEEEccCCchhHHHHH----HcCCCeEEEEeCCHHHHHHHHHHcCCCCCcEEEEcccccccc----ccCCCccEEEecc
Q 026558 50 RILIVGCGNSAFSEGMV----DDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE----FQTGSFDSVVDKG 121 (237)
Q Consensus 50 ~iLdlG~G~G~~~~~~~----~~~~~~~~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~----~~~~~fD~I~~~~ 121 (237)
+||-.| |+|.++..++ +.|+ +|+++|.++.......+.....++++++.+|+.+... +....+|+|+...
T Consensus 10 kILVTG-~tGfIGs~lv~~Ll~~g~-~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~~~a 87 (356)
T d1rkxa_ 10 RVFVTG-HTGFKGGWLSLWLQTMGA-TVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHMA 87 (356)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTC-EEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred EEEEEC-CCCHHHHHHHHHHHHCCC-EEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchhhhhhhhh
Confidence 899998 6787776654 4566 8999998765433333333334579999999977532 2234677777644
Q ss_pred c
Q 026558 122 T 122 (237)
Q Consensus 122 ~ 122 (237)
.
T Consensus 88 a 88 (356)
T d1rkxa_ 88 A 88 (356)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=81.35 E-value=2.3 Score=32.02 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=49.8
Q ss_pred cEEEEccCCc---hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHcC--CCCCcEEEEcccccccc---------ccCCCcc
Q 026558 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDE---------FQTGSFD 115 (237)
Q Consensus 50 ~iLdlG~G~G---~~~~~~~~~~~~~~~~vD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~---------~~~~~fD 115 (237)
++|--|++.| .....+++.|. +|+.+|.++..++.+.+.+. ....+.++.+|+.+... ...+..|
T Consensus 27 ~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD 105 (294)
T d1w6ua_ 27 VAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGHPN 105 (294)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTCSCS
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhccccc
Confidence 7888887555 23344555675 99999999988777666552 22467788899976432 1246899
Q ss_pred EEEecccc
Q 026558 116 SVVDKGTL 123 (237)
Q Consensus 116 ~I~~~~~l 123 (237)
+++.+...
T Consensus 106 ilvnnAg~ 113 (294)
T d1w6ua_ 106 IVINNAAG 113 (294)
T ss_dssp EEEECCCC
T ss_pred hhhhhhhh
Confidence 99987654
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=81.23 E-value=5.4 Score=27.50 Aligned_cols=69 Identities=13% Similarity=0.111 Sum_probs=40.2
Q ss_pred cEEEEccCC-chhHHHHHH-cCCCeEEEE-eCCHHHHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEecc
Q 026558 50 RILIVGCGN-SAFSEGMVD-DGYEDVVNV-DISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (237)
Q Consensus 50 ~iLdlG~G~-G~~~~~~~~-~~~~~~~~v-D~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~ 121 (237)
+|.=+|||. |..-..... ....+++++ |.+++..+...+...-.....+ ..|..++. .+...|+|+...
T Consensus 3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll--~~~~iD~v~I~t 74 (184)
T d1ydwa1 3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKI-HGSYESLL--EDPEIDALYVPL 74 (184)
T ss_dssp EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEE-ESSHHHHH--HCTTCCEEEECC
T ss_pred EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceee-cCcHHHhh--hccccceeeecc
Confidence 677899986 543332333 223377765 9998777666665532223333 34666653 456789988753
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=80.72 E-value=1.2 Score=27.49 Aligned_cols=54 Identities=15% Similarity=0.110 Sum_probs=32.7
Q ss_pred hhHHHHHHcCCCeEEEEeCCHH-HHHHHHHHcCCCCCcEEEEccccccccccCCCccEEEecccc
Q 026558 60 AFSEGMVDDGYEDVVNVDISSV-VIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (237)
Q Consensus 60 ~~~~~~~~~~~~~~~~vD~s~~-~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~I~~~~~l 123 (237)
.++..+.+.|+ .|+|.|..+. ..+.+++. .+.+..+.-.+. + ...|+|+.+..+
T Consensus 16 ~LA~~L~~~G~-~VsGSD~~~~~~t~~L~~~-----Gi~i~~gh~~~~--i--~~~d~vV~SsAI 70 (89)
T d1j6ua1 16 AVALHEFSNGN-DVYGSNIEETERTAYLRKL-----GIPIFVPHSADN--W--YDPDLVIKTPAV 70 (89)
T ss_dssp HHHHHHHHTTC-EEEEECSSCCHHHHHHHHT-----TCCEESSCCTTS--C--CCCSEEEECTTC
T ss_pred HHHHHHHhCCC-eEEEEeCCCChhHHHHHHC-----CCeEEeeecccc--c--CCCCEEEEecCc
Confidence 56667778887 9999999863 33333332 455544322221 1 357999887655
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=80.06 E-value=4.3 Score=29.72 Aligned_cols=106 Identities=16% Similarity=0.176 Sum_probs=60.0
Q ss_pred cEEEEccCCchhHH----HHHHcCCCeEEEEeC-CHHHHHHHHHHcCC-CCCcEEEEccccccccc---------cCCCc
Q 026558 50 RILIVGCGNSAFSE----GMVDDGYEDVVNVDI-SSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSF 114 (237)
Q Consensus 50 ~iLdlG~G~G~~~~----~~~~~~~~~~~~vD~-s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~f 114 (237)
.||--|++.| ++. .+++.|. +++..+. +++.++.+.+.++. ..++.++.+|+.+.... .-+..
T Consensus 3 V~lITGas~G-IG~a~a~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 80 (244)
T d1edoa_ 3 VVVVTGASRG-IGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTI 80 (244)
T ss_dssp EEEETTCSSH-HHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred EEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 4555565444 444 4455665 8877765 56667766665532 24677889999875321 23689
Q ss_pred cEEEeccccceec-cCCCChHHHH-----------HHHHHHHHhc--CCCcEEEEEE
Q 026558 115 DSVVDKGTLDSLL-CGSNSRQNAT-----------QMLKEVWRVL--KDKGVYILVT 157 (237)
Q Consensus 115 D~I~~~~~l~~~~-~~~~~~~~~~-----------~~l~~~~~~L--~pgG~l~~~~ 157 (237)
|+++.+......- ....+.++.. .+.+.+...| +.+|.++...
T Consensus 81 DiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnis 137 (244)
T d1edoa_ 81 DVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIA 137 (244)
T ss_dssp SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEc
Confidence 9999876543221 0111223222 2455556655 4578877754
|